Citrus Sinensis ID: 010640
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SA34 | 502 | Inosine-5'-monophosphate | yes | no | 0.982 | 0.988 | 0.768 | 0.0 | |
| P47996 | 503 | Inosine-5'-monophosphate | no | no | 0.982 | 0.986 | 0.750 | 0.0 | |
| Q84XA3 | 502 | Inosine-5'-monophosphate | N/A | no | 0.992 | 0.998 | 0.741 | 0.0 | |
| Q54QQ0 | 515 | Inosine-5'-monophosphate | yes | no | 0.944 | 0.926 | 0.493 | 1e-126 | |
| F6S675 | 512 | Inosine-5'-monophosphate | yes | no | 0.976 | 0.962 | 0.494 | 1e-126 | |
| E9PU28 | 514 | Inosine-5'-monophosphate | yes | no | 0.974 | 0.957 | 0.500 | 1e-126 | |
| A0JNA3 | 514 | Inosine-5'-monophosphate | yes | no | 0.968 | 0.951 | 0.486 | 1e-125 | |
| P12268 | 514 | Inosine-5'-monophosphate | yes | no | 0.974 | 0.957 | 0.499 | 1e-125 | |
| P20839 | 514 | Inosine-5'-monophosphate | no | no | 0.968 | 0.951 | 0.486 | 1e-125 | |
| Q07152 | 537 | Inosine-5'-monophosphate | yes | no | 0.966 | 0.908 | 0.488 | 1e-125 |
| >sp|Q9SA34|IMDH2_ARATH Inosine-5'-monophosphate dehydrogenase 2 OS=Arabidopsis thaliana GN=At1g16350 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/501 (76%), Positives = 437/501 (87%), Gaps = 5/501 (0%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
EDGFSA++LFSQGYSYTYDDVIFLPH+IDF DAVSLSTRL++ + LS+PCVASPMDTV
Sbjct: 4 FEDGFSAEKLFSQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSKRVPLSIPCVASPMDTV 63
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E +MAAAMAALGGIGIVH NC QA ++ AKS +VPI S + VFK P+ I +
Sbjct: 64 SESHMAAAMAALGGIGIVHYNCDIDTQASVIRHAKSLQVPIASDA--VFKCPEHQIGSVD 121
Query: 128 DFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNK--VKIFDYMRDCSS-NVSVPANYD 184
DF S++VFV+++GT ++LGYV+KS+W ++ D++ VKI+DYM+ C + + VP + D
Sbjct: 122 DFGPSSFVFVSQTGTLTPKLLGYVSKSEWSSMKDDQKEVKIYDYMKSCENKDYYVPWDID 181
Query: 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIG 244
L +I+ VLE FVVLEK+GE ++VVT++DVER+KGYP LG GTVG D KWMVGAAIG
Sbjct: 182 LDKIEAVLEDKQKGFVVLEKEGETVNVVTKDDVERVKGYPKLGSGTVGADKKWMVGAAIG 241
Query: 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQ 304
TRESDKERLEHLVKAG NVVVLDSSQGNS +Q+EMIKY K TYPELDV+GGNVVTMYQA+
Sbjct: 242 TRESDKERLEHLVKAGANVVVLDSSQGNSIYQLEMIKYVKNTYPELDVVGGNVVTMYQAE 301
Query: 305 NLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG 364
NLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVS++AAQ GVPVIADGGISNSG
Sbjct: 302 NLIKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSTLAAQHGVPVIADGGISNSG 361
Query: 365 HIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424
HIVKALVLGASTVMMGSFLAGSTEAPGAY Y+NGRRVKKYRGMGSLEAMTKGSDQRYLGD
Sbjct: 362 HIVKALVLGASTVMMGSFLAGSTEAPGAYEYRNGRRVKKYRGMGSLEAMTKGSDQRYLGD 421
Query: 425 KAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVR 484
AKLKIAQGVVGAVADKGSVLKFIPYTM AVKQGFQDLGASSLQSAH+LLR TLRLE R
Sbjct: 422 TAKLKIAQGVVGAVADKGSVLKFIPYTMHAVKQGFQDLGASSLQSAHELLRDNTLRLEAR 481
Query: 485 TGAAQVEGGVHGLVSYEKKSF 505
TGAAQ+EGG+HGLVSYEKKSF
Sbjct: 482 TGAAQIEGGIHGLVSYEKKSF 502
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 5 |
| >sp|P47996|IMDH1_ARATH Inosine-5'-monophosphate dehydrogenase 1 OS=Arabidopsis thaliana GN=IMPDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/502 (75%), Positives = 426/502 (84%), Gaps = 6/502 (1%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
+EDGF AD+LF+QGYSYTYDDVIFLPH+IDF DAVSLSTRL+R + LS+PCV+SPMDTV
Sbjct: 4 LEDGFPADKLFAQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E +MAAAMA+LGGIGIVH NC A QA ++ AKS + PI S + K P+ I +
Sbjct: 64 SESHMAAAMASLGGIGIVHYNCGIAAQASIIRQAKSLKHPIASDA--GVKFPEYEITSLD 121
Query: 128 DFDGSNYVFVTESGTRRS-RILGYVTKSDWE--NLSDNKVKIFDYMRDC-SSNVSVPANY 183
F S++VFV ++GT + ++LGYVTKS W+ N ++KI+DYM+ C SS+ VP
Sbjct: 122 AFGPSSFVFVEQTGTMTTPKLLGYVTKSQWKRMNYEQREMKIYDYMKSCDSSDYCVPWEI 181
Query: 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243
D +++ VLE FVVLE+DGE ++VVT++D++R+KGYP G GTVGPDG+WMVGAAI
Sbjct: 182 DFEKLEFVLEDKQKGFVVLERDGETVNVVTKDDIQRVKGYPKSGPGTVGPDGEWMVGAAI 241
Query: 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQA 303
GTRESDKERLEHLV GVN VVLDSSQGNS +Q+EMIKY KKTYPELDVIGGNVVTMYQA
Sbjct: 242 GTRESDKERLEHLVNVGVNAVVLDSSQGNSIYQLEMIKYVKKTYPELDVIGGNVVTMYQA 301
Query: 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363
QNLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV SIAAQSG+PVIADGGISNS
Sbjct: 302 QNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVCSIAAQSGIPVIADGGISNS 361
Query: 364 GHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLG 423
GHIVKALVLGASTVMMGSFLAGSTEAPG Y Y NG+R+KKYRGMGSLEAMTKGSDQRYLG
Sbjct: 362 GHIVKALVLGASTVMMGSFLAGSTEAPGGYEYTNGKRIKKYRGMGSLEAMTKGSDQRYLG 421
Query: 424 DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483
D+ KLKIAQGVVGAVADKGSVLK IPYTM AVKQGFQDLGASSLQSAH LLRS LRLE
Sbjct: 422 DQTKLKIAQGVVGAVADKGSVLKLIPYTMHAVKQGFQDLGASSLQSAHGLLRSNILRLEA 481
Query: 484 RTGAAQVEGGVHGLVSYEKKSF 505
RTGAAQVEGGVHGLVSYEKKSF
Sbjct: 482 RTGAAQVEGGVHGLVSYEKKSF 503
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|Q84XA3|IMDH_VIGUN Inosine-5'-monophosphate dehydrogenase OS=Vigna unguiculata GN=impdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/506 (74%), Positives = 419/506 (82%), Gaps = 5/506 (0%)
Query: 1 MDFSPLPIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCV 60
MDF+P PIEDGF+A++LFSQG+SYTYDDVIFLPHYIDF DAV LSTRLTR + L++P V
Sbjct: 1 MDFTPPPIEDGFTAEKLFSQGFSYTYDDVIFLPHYIDFAADAVDLSTRLTRRLPLAVPLV 60
Query: 61 ASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPD 120
ASPMDTV+E MA+AMA+LGGI IVHSN AA QA LV +AKSRRVPI S F AP
Sbjct: 61 ASPMDTVSESAMASAMASLGGIAIVHSNVPAAAQASLVRAAKSRRVPILSEP--AFAAPS 118
Query: 121 GCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180
I +DF S ++ VT+ G ++LGYV K DW N D +++ DYM P
Sbjct: 119 AVIEHEDDFAASPFLLVTDIGAAGGKLLGYVAKRDWTNQKDKSLRVGDYMAPPPRRA--P 176
Query: 181 ANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLG-KGTVGPDGKWMV 239
N DL +I E++E V LE+DGE +D+V RE+VER+KGYP L TVGPDG++MV
Sbjct: 177 WNADLNKIHEIMENEKSGAVALERDGEVVDLVVREEVERVKGYPKLAAPATVGPDGEFMV 236
Query: 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVT 299
GAA+GTRE DKERL+HLVKAGVNVVVLDSSQGNS +Q+EM+KY K YPELDVIGGNVVT
Sbjct: 237 GAAMGTREDDKERLKHLVKAGVNVVVLDSSQGNSIYQLEMVKYVKSVYPELDVIGGNVVT 296
Query: 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG 359
MYQA+NLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIA +SGVPVIADGG
Sbjct: 297 MYQAENLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAYKSGVPVIADGG 356
Query: 360 ISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQ 419
ISNSGHIVKAL LGAST MMGSFLAGS EAPGAYVYQNG+RVKKYRGMGSLEAMTKGSD
Sbjct: 357 ISNSGHIVKALSLGASTAMMGSFLAGSHEAPGAYVYQNGQRVKKYRGMGSLEAMTKGSDA 416
Query: 420 RYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTL 479
RYLGD AKLKIAQGVVGAV DKGSVL FIPYT+QAV+QGFQD+GASSLQSAHDLLRSR L
Sbjct: 417 RYLGDTAKLKIAQGVVGAVKDKGSVLNFIPYTLQAVRQGFQDIGASSLQSAHDLLRSRVL 476
Query: 480 RLEVRTGAAQVEGGVHGLVSYEKKSF 505
RLEVRTGAAQVEGGVHGLVSYEKK +
Sbjct: 477 RLEVRTGAAQVEGGVHGLVSYEKKYY 502
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Vigna unguiculata (taxid: 3917) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|Q54QQ0|IMDH_DICDI Inosine-5'-monophosphate dehydrogenase OS=Dictyostelium discoideum GN=impdh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 250/507 (49%), Positives = 331/507 (65%), Gaps = 30/507 (5%)
Query: 10 DGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTE 69
DGF LF Q + YTYDD+I LP +I+F D VSL T+LT+NI L+ P V+SPMDTVTE
Sbjct: 22 DGFDCFELFQQRHGYTYDDLIMLPGHINFSADDVSLKTKLTKNISLNAPLVSSPMDTVTE 81
Query: 70 DYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDF 129
MA MA LGGIGI+H N T +Q V K + + + +P ++D D
Sbjct: 82 HLMAINMALLGGIGIIHYNNTVEEQVVEVKKVKRFKNGFITDP--IVLSPTHKLSDV-DM 138
Query: 130 DGSNYVF----VTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDL 185
Y F +T++G +++G VT D D+++D S+ +S DL
Sbjct: 139 IKQKYGFSGIPITDTGRIGGKLVGIVTSRDT-----------DFIKDRSTTLSEVMTTDL 187
Query: 186 --GQIDEVLEK-NDV-------DFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDG 235
GQ + LE+ N + ++ GE + + +R+D+ + + +P K +
Sbjct: 188 ITGQQNCTLEEANSILKSCKKGKLPIVNDKGELVALASRDDLVKNRDFPMATKDH--ENK 245
Query: 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG 295
K +VGAA+GTRE+DKERL L AGV+VV+LDSSQG+S++Q EMI++ K+ YP++DVIGG
Sbjct: 246 KLLVGAALGTRETDKERLAALSDAGVDVVILDSSQGDSTYQREMIRFIKRNYPKIDVIGG 305
Query: 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355
NVVT Q ++LI+AGVDGLRVGMG GSICTTQEV A GR QATAV+K + ++Q VP+I
Sbjct: 306 NVVTTSQCESLIQAGVDGLRVGMGVGSICTTQEVMACGRPQATAVFKCALYSSQYNVPII 365
Query: 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK 415
ADGGI GHI+K L LGAS+VMMGS LAG+ EAPG Y Y++G R+KKYRGMGSLEAM K
Sbjct: 366 ADGGIRTIGHIIKGLSLGASSVMMGSMLAGTEEAPGDYFYKDGMRLKKYRGMGSLEAMVK 425
Query: 416 GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLR 475
G DQRY + K+K+AQGV G+V DKGSV KF+PY +Q +K G QDLG +S+ + + +
Sbjct: 426 GGDQRYFSETDKIKVAQGVSGSVVDKGSVKKFVPYLIQGIKHGLQDLGCNSVTNLRESVY 485
Query: 476 SRTLRLEVRTGAAQVEGGVHGLVSYEK 502
+R EVRT AAQVEG VH L SYEK
Sbjct: 486 GGKVRFEVRTAAAQVEGSVHSLFSYEK 512
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|F6S675|IMDH1_XENTR Inosine-5'-monophosphate dehydrogenase 1 OS=Xenopus tropicalis GN=impdh1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/502 (49%), Positives = 326/502 (64%), Gaps = 9/502 (1%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
EDG +A LF+ TY+D + LP +IDF D V L++ LTR I L P ++SPMDTVT
Sbjct: 15 EDGLTAQHLFANSDGLTYNDFLILPGFIDFTADEVDLTSALTRKITLKTPLISSPMDTVT 74
Query: 69 EDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAND 128
E MA AMA +GGIGI+H NCT QA V K + I + G + +A +
Sbjct: 75 ESDMAIAMALMGGIGIIHHNCTPEFQAN-EVRKKFEQGFITDPVVMSLNHTVGDVFEAKN 133
Query: 129 FDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANYDLG 186
G + + VTE+G S+++G VT D + L++ + + M V PA L
Sbjct: 134 RHGFSGIPVTETGKMGSKLVGIVTSRDIDFLTEKDYSTYLSEVMTKRDELVVAPAGVTLK 193
Query: 187 QIDEVLEKNDVDFVVLEKDGERL-DVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGT 245
+ +E+L+++ + + D + L ++ R D+++ + YP K + + GAAIGT
Sbjct: 194 EANEILQRSKKGKLPIVNDSDELVAIIARTDLKKNRDYPLASKDC---RKQLLCGAAIGT 250
Query: 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQN 305
RE DK RL+ L +AGV+VVVLDSSQGNS +QI MI Y K+ YPEL V+GGNVVT QA+N
Sbjct: 251 REDDKYRLDLLTQAGVDVVVLDSSQGNSVYQINMIHYIKQKYPELQVVGGNVVTAAQAKN 310
Query: 306 LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365
LI+AGVD LRVGMG GSIC TQEV A GR Q TAVYKV+ A + GVPVIADGGI GH
Sbjct: 311 LIDAGVDALRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPVIADGGIQTVGH 370
Query: 366 IVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKG--SDQRYLG 423
+VKAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S +RY
Sbjct: 371 VVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKNTSSQKRYFS 430
Query: 424 DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483
+ K+K+AQGV G++ DKGS+ KF+PY + ++ G QD+GA SL ++ S L+LE
Sbjct: 431 EGDKVKVAQGVSGSIQDKGSIHKFVPYLIAGIQHGCQDIGAKSLSILRSMMYSGELKLEK 490
Query: 484 RTGAAQVEGGVHGLVSYEKKSF 505
RT +AQVEGGVHGL SYEK+ +
Sbjct: 491 RTMSAQVEGGVHGLHSYEKRLY 512
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|E9PU28|IMDH2_RAT Inosine-5'-monophosphate dehydrogenase 2 OS=Rattus norvegicus GN=Impdh2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 253/505 (50%), Positives = 322/505 (63%), Gaps = 13/505 (2%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E MA AMA GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGV 192
Query: 184 DLGQIDEVLEKNDV-DFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ ++ + E + ++ R D+++ + YP K T + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNESDELVAIIARTDLKKNRDYPLASKDT---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L AGV+VVVLDSSQGNS FQI MIKY K+ YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYIKEKYPNLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMGSGSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVHGL SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHGLHSYEKRLF 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|A0JNA3|IMDH1_BOVIN Inosine-5'-monophosphate dehydrogenase 1 OS=Bos taurus GN=IMPDH1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/508 (48%), Positives = 329/508 (64%), Gaps = 19/508 (3%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
EDG +A +LF+ TY+D + LP +IDF D V L++ LTR I L P ++SPMDTVT
Sbjct: 15 EDGLTAQQLFANADGLTYNDFLILPGFIDFTADEVDLTSALTRKITLKTPLISSPMDTVT 74
Query: 69 EDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSL---DVFKAPDGCIND 125
E MA AMA +GGIG +H NCT QA V R+V F V +P + D
Sbjct: 75 EADMAIAMALMGGIGFIHHNCTPEFQANEV-----RKVKKFEQGFITDPVVLSPSHTVGD 129
Query: 126 ---ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLS--DNKVKIFDYMRDCSSNVSVP 180
A G + + +TE+GT S+++G VT D + L+ D+ + + M + V P
Sbjct: 130 VLEAKIRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRNELVVAP 189
Query: 181 ANYDLGQIDEVLEKNDVDFVVLEKDGERL-DVVTREDVERLKGYPNLGKGTVGPDGKWMV 239
A L + +E+L+++ + + D + L ++ R D+++ + YP K + + +
Sbjct: 190 AGVTLKEANEILQRSKKGKLPIVNDRDELVAIIARTDLKKNRDYPLASKDS---HKQLLC 246
Query: 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVT 299
GAA+GTRE DK RL+ L +AG +V+VLDSSQGNS +QI M+ Y K+ YP L VIGGNVVT
Sbjct: 247 GAAVGTREDDKYRLDLLTQAGADVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVT 306
Query: 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG 359
QA+NLI+AGVDGLRVGMG GSIC TQEV A GR Q TAVYKV+ A + GVPVIADGG
Sbjct: 307 AAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPVIADGG 366
Query: 360 ISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GS 417
I GH+VKAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S
Sbjct: 367 IQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSS 426
Query: 418 DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSR 477
+RY + K+KIAQGV G++ DKGS+ KF+PY + ++ G QD+GA SL ++ S
Sbjct: 427 QKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSG 486
Query: 478 TLRLEVRTGAAQVEGGVHGLVSYEKKSF 505
L+ E RT +AQ+EGGVHGL SYEK+ +
Sbjct: 487 ELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|P12268|IMDH2_HUMAN Inosine-5'-monophosphate dehydrogenase 2 OS=Homo sapiens GN=IMPDH2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 450 bits (1158), Expect = e-125, Method: Compositional matrix adjust.
Identities = 252/505 (49%), Positives = 321/505 (63%), Gaps = 13/505 (2%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E MA AMA GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDCFLEEIMTKREDLVVAPAGI 192
Query: 184 DLGQIDEVLEKNDV-DFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ ++ +D E + ++ R D+++ + YP K + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASKDA---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L +AGV+VVVLDSSQGNS FQI MIKY K YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMGSGSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVH L SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHSLHSYEKRLF 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|P20839|IMDH1_HUMAN Inosine-5'-monophosphate dehydrogenase 1 OS=Homo sapiens GN=IMPDH1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 247/508 (48%), Positives = 329/508 (64%), Gaps = 19/508 (3%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
EDG +A +LF+ TY+D + LP +IDF D V L++ LTR I L P ++SPMDTVT
Sbjct: 15 EDGLTAQQLFASADGLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVT 74
Query: 69 EDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSL---DVFKAPDGCIND 125
E MA AMA +GGIG +H NCT QA V R+V F V +P + D
Sbjct: 75 EADMAIAMALMGGIGFIHHNCTPEFQANEV-----RKVKKFEQGFITDPVVLSPSHTVGD 129
Query: 126 ---ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLS--DNKVKIFDYMRDCSSNVSVP 180
A G + + +TE+GT S+++G VT D + L+ D+ + + M V P
Sbjct: 130 VLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELVVAP 189
Query: 181 ANYDLGQIDEVLEKNDVDFVVLEKDGERL-DVVTREDVERLKGYPNLGKGTVGPDGKWMV 239
A L + +E+L+++ + + D + L ++ R D+++ + YP K + + +
Sbjct: 190 AGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKDS---QKQLLC 246
Query: 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVT 299
GAA+GTRE DK RL+ L +AGV+V+VLDSSQGNS +QI M+ Y K+ YP L VIGGNVVT
Sbjct: 247 GAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVT 306
Query: 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG 359
QA+NLI+AGVDGLRVGMG GSIC TQEV A GR Q TAVYKV+ A + GVP+IADGG
Sbjct: 307 AAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGG 366
Query: 360 ISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GS 417
I GH+VKAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S
Sbjct: 367 IQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSS 426
Query: 418 DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSR 477
+RY + K+KIAQGV G++ DKGS+ KF+PY + ++ G QD+GA SL ++ S
Sbjct: 427 QKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSG 486
Query: 478 TLRLEVRTGAAQVEGGVHGLVSYEKKSF 505
L+ E RT +AQ+EGGVHGL SYEK+ +
Sbjct: 487 ELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Could also have a single-stranded nucleic acid-binding activity and could play a role in RNA and/or DNA metabolism. It may also have a role in the development of malignancy and the growth progression of some tumors. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
| >sp|Q07152|IMDH_DROME Inosine-5'-monophosphate dehydrogenase OS=Drosophila melanogaster GN=ras PE=1 SV=1 | Back alignment and function description |
|---|
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 250/512 (48%), Positives = 331/512 (64%), Gaps = 24/512 (4%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
++DG S LF G TY+D + LP YIDF + V LS+ LT+++ L P V+SPMDTV
Sbjct: 36 LQDGLSCKELFQNGEGLTYNDFLILPGYIDFTAEEVDLSSPLTKSLTLRAPLVSSPMDTV 95
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKS-----RRVPIFSSSLDVFKAPDGC 122
TE MA AMA GGIGI+H NCT QA V K R P S + G
Sbjct: 96 TESEMAIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPSVMSPTNTV----GD 151
Query: 123 INDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVP 180
+ +A +G VTE+G ++LG VT D + +N+ ++ D M + V+ P
Sbjct: 152 VLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDID-FRENQPEVLLADIM--TTELVTAP 208
Query: 181 ANYDLGQIDEVLEKNDV-DFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMV 239
+L + +LEK+ ++ + GE + ++ R D+++ + YPN K + + + +V
Sbjct: 209 NGINLPTANAILEKSKKGKLPIVNQAGELVAMIARTDLKKARSYPNASKDS---NKQLLV 265
Query: 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVT 299
GAAIGTR DK RL LV GV+V++LDSSQGNS +Q+EMIKY K+TYPEL VIGGNVVT
Sbjct: 266 GAAIGTRSEDKARLALLVANGVDVIILDSSQGNSVYQVEMIKYIKETYPELQVIGGNVVT 325
Query: 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG 359
QA+NLI+AGVDGLRVGMGSGSIC TQEV A G QATAVY+VS+ A Q GVPVIADGG
Sbjct: 326 RAQAKNLIDAGVDGLRVGMGSGSICITQEVMACGCPQATAVYQVSTYARQFGVPVIADGG 385
Query: 360 ISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS-- 417
I + GHIVKA+ LGAS VMMGS LAG++EAPG Y + +G R+KKYRGMGSLEAM +G
Sbjct: 386 IQSIGHIVKAIALGASAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMERGDAK 445
Query: 418 ----DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473
+ Y + K+K+AQGV G++ DKGSVL+++PY ++ QD+GA+S+ D+
Sbjct: 446 GAAMSRYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSCQDIGANSINKLRDM 505
Query: 474 LRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 505
+ + LR RT +AQ+EG VHGL SYEK+ F
Sbjct: 506 IYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF 537
|
Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | ||||||
| 255550731 | 503 | inosine-5-monophosphate dehydrogenase, p | 0.982 | 0.986 | 0.762 | 0.0 | |
| 449444158 | 496 | PREDICTED: inosine-5'-monophosphate dehy | 0.982 | 1.0 | 0.748 | 0.0 | |
| 15219217 | 502 | IMP dehydrogenase [Arabidopsis thaliana] | 0.982 | 0.988 | 0.768 | 0.0 | |
| 224109084 | 501 | predicted protein [Populus trichocarpa] | 0.976 | 0.984 | 0.778 | 0.0 | |
| 297844558 | 502 | hypothetical protein ARALYDRAFT_889025 [ | 0.982 | 0.988 | 0.762 | 0.0 | |
| 21618070 | 503 | inosine-5'-monophosphate dehydrogenase, | 0.982 | 0.986 | 0.752 | 0.0 | |
| 15219385 | 503 | inosine-5'-monophosphate dehydrogenase [ | 0.982 | 0.986 | 0.750 | 0.0 | |
| 224101315 | 500 | predicted protein [Populus trichocarpa] | 0.980 | 0.99 | 0.769 | 0.0 | |
| 75148854 | 502 | RecName: Full=Inosine-5'-monophosphate d | 0.992 | 0.998 | 0.741 | 0.0 | |
| 297842729 | 503 | hypothetical protein ARALYDRAFT_477114 [ | 0.982 | 0.986 | 0.760 | 0.0 |
| >gi|255550731|ref|XP_002516414.1| inosine-5-monophosphate dehydrogenase, putative [Ricinus communis] gi|223544449|gb|EEF45969.1| inosine-5-monophosphate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/500 (76%), Positives = 435/500 (87%), Gaps = 4/500 (0%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
+EDG+SA++LF+QGYSYTYDDVIFLPHYIDFP DAVSLST L++N+ LS+PCV+SPMDTV
Sbjct: 6 VEDGYSAEKLFNQGYSYTYDDVIFLPHYIDFPTDAVSLSTNLSKNVPLSIPCVSSPMDTV 65
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
TE YMA AMAALGGIGI+HSN + + QA +V S KSRRVPI S+ VF +PD I +
Sbjct: 66 TESYMATAMAALGGIGIIHSNLSPSHQADMVRSVKSRRVPILSNP--VFMSPDSRILNHF 123
Query: 128 DFDGS-NYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLG 186
+ D + V VTESG S+++GYV KSDW LS+ + K+ DYMR S + VP +Y++
Sbjct: 124 EDDATLPCVLVTESGAANSKVIGYVLKSDWVGLSNKETKLVDYMRTGDSKLYVPWSYEVA 183
Query: 187 QIDEVLEKNDVDFVVLEKDG-ERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGT 245
QID L + + DFV+LE +G E +DV+T+E+VER+K YP LGKGTVGPDGKWMVGA+IGT
Sbjct: 184 QIDAYLRQEERDFVLLENEGGEAVDVITKEEVERVKEYPKLGKGTVGPDGKWMVGASIGT 243
Query: 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQN 305
RESDKERL+HLVKAG+N VVLDSSQGNS +QIEMI Y KKTYPELDVIGGNVVT+ QAQN
Sbjct: 244 RESDKERLQHLVKAGINAVVLDSSQGNSIYQIEMINYIKKTYPELDVIGGNVVTVNQAQN 303
Query: 306 LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365
LI+ GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH
Sbjct: 304 LIKTGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 363
Query: 366 IVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDK 425
IVKAL +GASTVMMG FLAGS EAPGAY+YQ+G R+K+YRGMGSLEAMTKGSDQRYLGD
Sbjct: 364 IVKALTIGASTVMMGGFLAGSIEAPGAYMYQDGCRIKRYRGMGSLEAMTKGSDQRYLGDT 423
Query: 426 AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRT 485
AKLKIAQGVVGAV+DKGSVL+F+PYTMQAVKQGFQDLGASSLQSAHDLLRS+TLRLEVRT
Sbjct: 424 AKLKIAQGVVGAVSDKGSVLQFVPYTMQAVKQGFQDLGASSLQSAHDLLRSKTLRLEVRT 483
Query: 486 GAAQVEGGVHGLVSYEKKSF 505
GAAQVEGGVHGLV YEKK+F
Sbjct: 484 GAAQVEGGVHGLVFYEKKAF 503
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444158|ref|XP_004139842.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like [Cucumis sativus] gi|449492992|ref|XP_004159162.1| PREDICTED: inosine-5'-monophosphate dehydrogenase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/500 (74%), Positives = 436/500 (87%), Gaps = 4/500 (0%)
Query: 6 LPIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMD 65
+ +EDGF+A++LF+QG+SYTYDDVIFLPHYIDFP D+V L+TRLTRNI LS+PCV+SPMD
Sbjct: 1 MAMEDGFAAEKLFNQGFSYTYDDVIFLPHYIDFPTDSVQLATRLTRNISLSIPCVSSPMD 60
Query: 66 TVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND 125
TVTE YMA+AMA+LGGIGI+HSN A+ QA +V +AK+RRVPI S+ VFK+P I+
Sbjct: 61 TVTEAYMASAMASLGGIGIIHSNSPASQQAAMVHAAKARRVPILSNL--VFKSPSDRIDS 118
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDL 185
+DF S ++ VTESGT +S++LGYV+ +DW + + +VKI+DYM +S SVP NYDL
Sbjct: 119 DDDFASSPFILVTESGTSKSKLLGYVSYADWTSQGNKEVKIYDYM--VNSGASVPWNYDL 176
Query: 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGT 245
GQ+D LE+N DFV L KDGE +DV T+ +VER+K YP LG G+V DG W+VGA+IGT
Sbjct: 177 GQLDAFLEENKKDFVPLLKDGEVVDVATKSEVERIKSYPKLGVGSVAADGSWLVGASIGT 236
Query: 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQN 305
RE DKERL+ LV+AG+NVVVLDSSQGNSS+QI+MIKY K+TYPELDVIGGNVVTM QAQN
Sbjct: 237 REHDKERLKLLVQAGINVVVLDSSQGNSSYQIDMIKYVKRTYPELDVIGGNVVTMAQAQN 296
Query: 306 LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365
LI+AGVDGLR+GMGSGSICTTQEVCAVGRGQATAVYKVS +A+ SGVPVIADGGISNSGH
Sbjct: 297 LIQAGVDGLRIGMGSGSICTTQEVCAVGRGQATAVYKVSLVASHSGVPVIADGGISNSGH 356
Query: 366 IVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDK 425
IVKALVLGASTVMMGSFLAGSTEAPGA+ +NG+RVKKYRGMGSLEAM KGSD RYLGD
Sbjct: 357 IVKALVLGASTVMMGSFLAGSTEAPGAFETRNGQRVKKYRGMGSLEAMIKGSDARYLGDT 416
Query: 426 AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRT 485
A LKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASS++SAHDLL S+ LRLEVR+
Sbjct: 417 ATLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSVKSAHDLLSSKVLRLEVRS 476
Query: 486 GAAQVEGGVHGLVSYEKKSF 505
GAAQVEGG+HGLVSYEK+SF
Sbjct: 477 GAAQVEGGIHGLVSYEKRSF 496
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219217|ref|NP_173085.1| IMP dehydrogenase [Arabidopsis thaliana] gi|14194878|sp|Q9SA34.1|IMDH2_ARATH RecName: Full=Inosine-5'-monophosphate dehydrogenase 2; Short=IMP dehydrogenase 2; Short=IMPD 2; Short=IMPDH 2 gi|4966356|gb|AAD34687.1|AC006341_15 Strong similarity to gb|L34684 inosine monophosphate dehydrogenase (IMPDH) from Arabidopsis thaliana and is a member of the PF|00478 IMP dehydrogenase family [Arabidopsis thaliana] gi|332191320|gb|AEE29441.1| IMP dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/501 (76%), Positives = 437/501 (87%), Gaps = 5/501 (0%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
EDGFSA++LFSQGYSYTYDDVIFLPH+IDF DAVSLSTRL++ + LS+PCVASPMDTV
Sbjct: 4 FEDGFSAEKLFSQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSKRVPLSIPCVASPMDTV 63
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E +MAAAMAALGGIGIVH NC QA ++ AKS +VPI S + VFK P+ I +
Sbjct: 64 SESHMAAAMAALGGIGIVHYNCDIDTQASVIRHAKSLQVPIASDA--VFKCPEHQIGSVD 121
Query: 128 DFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNK--VKIFDYMRDCSS-NVSVPANYD 184
DF S++VFV+++GT ++LGYV+KS+W ++ D++ VKI+DYM+ C + + VP + D
Sbjct: 122 DFGPSSFVFVSQTGTLTPKLLGYVSKSEWSSMKDDQKEVKIYDYMKSCENKDYYVPWDID 181
Query: 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIG 244
L +I+ VLE FVVLEK+GE ++VVT++DVER+KGYP LG GTVG D KWMVGAAIG
Sbjct: 182 LDKIEAVLEDKQKGFVVLEKEGETVNVVTKDDVERVKGYPKLGSGTVGADKKWMVGAAIG 241
Query: 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQ 304
TRESDKERLEHLVKAG NVVVLDSSQGNS +Q+EMIKY K TYPELDV+GGNVVTMYQA+
Sbjct: 242 TRESDKERLEHLVKAGANVVVLDSSQGNSIYQLEMIKYVKNTYPELDVVGGNVVTMYQAE 301
Query: 305 NLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG 364
NLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVS++AAQ GVPVIADGGISNSG
Sbjct: 302 NLIKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSTLAAQHGVPVIADGGISNSG 361
Query: 365 HIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424
HIVKALVLGASTVMMGSFLAGSTEAPGAY Y+NGRRVKKYRGMGSLEAMTKGSDQRYLGD
Sbjct: 362 HIVKALVLGASTVMMGSFLAGSTEAPGAYEYRNGRRVKKYRGMGSLEAMTKGSDQRYLGD 421
Query: 425 KAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVR 484
AKLKIAQGVVGAVADKGSVLKFIPYTM AVKQGFQDLGASSLQSAH+LLR TLRLE R
Sbjct: 422 TAKLKIAQGVVGAVADKGSVLKFIPYTMHAVKQGFQDLGASSLQSAHELLRDNTLRLEAR 481
Query: 485 TGAAQVEGGVHGLVSYEKKSF 505
TGAAQ+EGG+HGLVSYEKKSF
Sbjct: 482 TGAAQIEGGIHGLVSYEKKSF 502
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109084|ref|XP_002315077.1| predicted protein [Populus trichocarpa] gi|222864117|gb|EEF01248.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/502 (77%), Positives = 442/502 (88%), Gaps = 9/502 (1%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
EDG A++LF+QGYSYTYDDVIFLPHYIDFP DAV+LST+L+RNI LS+PCV+SPMDTV
Sbjct: 5 FEDGSPAEKLFNQGYSYTYDDVIFLPHYIDFPTDAVNLSTKLSRNIPLSIPCVSSPMDTV 64
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
TE YMAAAMAA+GGIGI+HSN T ++QA ++ S KSRRVPI SS VFK PD I N
Sbjct: 65 TESYMAAAMAAVGGIGIIHSNATPSEQADMIRSVKSRRVPILSSP--VFKTPDSRI--VN 120
Query: 128 DFDGSN--YVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDL 185
+F+G + +VFVT+SG +S++LGYV KSDW L D ++K+ + MR +NVSVP +YDL
Sbjct: 121 EFEGDDVPFVFVTQSGNEKSKLLGYVAKSDWLGLKDTEIKLGEIMR-TDANVSVPCHYDL 179
Query: 186 GQIDEVLEKNDVDFVVLEKDG-ERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIG 244
GQI+ L++ DFVVLEK+G E +DVVT+E+VER+KGYP LGKGTVG DG+WMVGAAIG
Sbjct: 180 GQINGKLKEEGRDFVVLEKEGGEVVDVVTKEEVERVKGYPKLGKGTVGSDGRWMVGAAIG 239
Query: 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQ 304
TR SDKERLEHLVKAGV+V+VLDSSQGNS +QIEMIKY K+TYPELDVIGGNVVTM QAQ
Sbjct: 240 TRGSDKERLEHLVKAGVDVIVLDSSQGNSIYQIEMIKYVKQTYPELDVIGGNVVTMSQAQ 299
Query: 305 NLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG 364
NLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIA QSG+PVIADGGIS SG
Sbjct: 300 NLIKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIATQSGIPVIADGGISFSG 359
Query: 365 HIVKALVLGASTVMMGSFLAGSTEAPGAY-VYQNGRRVKKYRGMGSLEAMTKGSDQRYLG 423
HIVKALVLGASTVMMGSFLAGSTEAPGAY + + G +VKKYRGMGSLEAMTKGSDQRYLG
Sbjct: 360 HIVKALVLGASTVMMGSFLAGSTEAPGAYELNEKGLQVKKYRGMGSLEAMTKGSDQRYLG 419
Query: 424 DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483
D AKLKIAQGVVGAVADKGSVLK +PYTMQAVKQGFQDLGASSL+SAHDLLRS+TLRLEV
Sbjct: 420 DTAKLKIAQGVVGAVADKGSVLKHVPYTMQAVKQGFQDLGASSLRSAHDLLRSKTLRLEV 479
Query: 484 RTGAAQVEGGVHGLVSYEKKSF 505
RT AAQVEGGVHGL S+EKK+F
Sbjct: 480 RTAAAQVEGGVHGLASHEKKAF 501
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844558|ref|XP_002890160.1| hypothetical protein ARALYDRAFT_889025 [Arabidopsis lyrata subsp. lyrata] gi|297336002|gb|EFH66419.1| hypothetical protein ARALYDRAFT_889025 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/501 (76%), Positives = 434/501 (86%), Gaps = 5/501 (0%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
EDGFSA++LFSQGYSYTYDDVIFLPH+IDF DAVSLSTRL++ + LS+PCVASPMDTV
Sbjct: 4 FEDGFSAEKLFSQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSKRVPLSIPCVASPMDTV 63
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E +MAAAMAALGGIGIVH NC QA ++ AKS +VPI S + VFK P+ I +
Sbjct: 64 SESHMAAAMAALGGIGIVHYNCDIETQASVIRHAKSLQVPIASDA--VFKCPEHQIGSVD 121
Query: 128 DFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNK--VKIFDYMRDCSS-NVSVPANYD 184
DF S++VFV+++GT ++LGYV+KS+W ++ D++ +KI+DYMR C S + VP + D
Sbjct: 122 DFGPSSFVFVSQTGTLTPKLLGYVSKSEWSSMKDDQKEMKIYDYMRSCESKDYYVPWDID 181
Query: 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIG 244
L +I+ VLE FVVLEK+GE ++VVT++DVER+KGYP LG GTVG D KWMVGAAIG
Sbjct: 182 LDKIEAVLEDKQKGFVVLEKEGEAVNVVTKDDVERVKGYPKLGSGTVGADKKWMVGAAIG 241
Query: 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQ 304
TR+SDKERLEHLV AG NVVVLDSSQGNS +Q+EMIKY K TYPELDV+GGNVVTMYQA+
Sbjct: 242 TRDSDKERLEHLVDAGANVVVLDSSQGNSIYQLEMIKYVKNTYPELDVVGGNVVTMYQAE 301
Query: 305 NLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG 364
NLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVS++A+Q GVPVIADGGISNSG
Sbjct: 302 NLIKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSTLASQHGVPVIADGGISNSG 361
Query: 365 HIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424
HIVKALVLGASTVMMGSFLAGSTEAPGAY Y+NGRRVKKYRGMGSLEAMTKGSDQRYLGD
Sbjct: 362 HIVKALVLGASTVMMGSFLAGSTEAPGAYEYRNGRRVKKYRGMGSLEAMTKGSDQRYLGD 421
Query: 425 KAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVR 484
AKLKIAQGVVGAVADKGSVLKFIPYTM AVKQGFQDLGASSLQSAH LLR LRLE R
Sbjct: 422 TAKLKIAQGVVGAVADKGSVLKFIPYTMHAVKQGFQDLGASSLQSAHKLLRDNILRLEAR 481
Query: 485 TGAAQVEGGVHGLVSYEKKSF 505
TGAAQ+EGG+HGLVSYEKKSF
Sbjct: 482 TGAAQIEGGIHGLVSYEKKSF 502
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21618070|gb|AAM67120.1| inosine-5'-monophosphate dehydrogenase, putative [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/502 (75%), Positives = 427/502 (85%), Gaps = 6/502 (1%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
IEDGF AD+LF+QGYSYTYDDVIFLPH+IDF DAVSLSTRL+R + LS+PCV+SPMDTV
Sbjct: 4 IEDGFPADKLFAQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E +MAAAMA+LGGIGIVH NC A QA ++ AKS + PI S + K P+ I +
Sbjct: 64 SESHMAAAMASLGGIGIVHYNCDIAAQASIIRQAKSLKHPIASDA--GVKLPEYEITSVD 121
Query: 128 DFDGSNYVFVTESGTRRS-RILGYVTKSDWE--NLSDNKVKIFDYMRDC-SSNVSVPANY 183
F S++VFV ++GT + ++LGYVTKS W+ N ++KI+DYM+ C SS+ VP +
Sbjct: 122 AFGPSSFVFVEQTGTMTTPKLLGYVTKSQWKRMNYEQREMKIYDYMKSCDSSDYCVPWDI 181
Query: 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243
D +++ VLE FVVLE+DGE ++VVT++D++R+KGYP G GTVGPDG+WMVGAAI
Sbjct: 182 DFEKLEFVLEDKQKGFVVLERDGETVNVVTKDDIQRVKGYPKSGPGTVGPDGEWMVGAAI 241
Query: 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQA 303
GTRESDKERLEHLV AGVN VVLDSSQGNS +Q+EMIKY KKTYPELDVIGGNVVTMYQA
Sbjct: 242 GTRESDKERLEHLVNAGVNAVVLDSSQGNSIYQLEMIKYVKKTYPELDVIGGNVVTMYQA 301
Query: 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363
QNLI+ GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV SIAA+SG+PVIADGGISNS
Sbjct: 302 QNLIQVGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVCSIAARSGIPVIADGGISNS 361
Query: 364 GHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLG 423
GHIVKALVLGASTVMMGSFLAGSTEAPG Y Y NG+R+KKYRGMGSLEAMTKGSDQRYLG
Sbjct: 362 GHIVKALVLGASTVMMGSFLAGSTEAPGGYEYTNGKRIKKYRGMGSLEAMTKGSDQRYLG 421
Query: 424 DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483
DK KLKIAQGVVGAVADKGSVLK IPYTM AVKQGFQDLGASSLQSAH LLRS LRLE
Sbjct: 422 DKTKLKIAQGVVGAVADKGSVLKLIPYTMHAVKQGFQDLGASSLQSAHGLLRSNILRLEA 481
Query: 484 RTGAAQVEGGVHGLVSYEKKSF 505
RTGAAQVEGGVHGLVSYEKKSF
Sbjct: 482 RTGAAQVEGGVHGLVSYEKKSF 503
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219385|ref|NP_178065.1| inosine-5'-monophosphate dehydrogenase [Arabidopsis thaliana] gi|1352458|sp|P47996.1|IMDH1_ARATH RecName: Full=Inosine-5'-monophosphate dehydrogenase 1; Short=IMP dehydrogenase 1; Short=IMPD 1; Short=IMPDH 1 gi|4835762|gb|AAD30229.1|AC007202_11 Identical to gb|L34684 IMP dehydrogenase (IMPDH) from Arabidopsis thaliana [Arabidopsis thaliana] gi|18087631|gb|AAL58945.1|AF462859_1 At1g79470/T8K14_11 [Arabidopsis thaliana] gi|1100063|gb|AAB41940.1| IMP dehydrogenase [Arabidopsis thaliana] gi|23463051|gb|AAN33195.1| At1g79470/T8K14_11 [Arabidopsis thaliana] gi|332198126|gb|AEE36247.1| inosine-5'-monophosphate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/502 (75%), Positives = 426/502 (84%), Gaps = 6/502 (1%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
+EDGF AD+LF+QGYSYTYDDVIFLPH+IDF DAVSLSTRL+R + LS+PCV+SPMDTV
Sbjct: 4 LEDGFPADKLFAQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E +MAAAMA+LGGIGIVH NC A QA ++ AKS + PI S + K P+ I +
Sbjct: 64 SESHMAAAMASLGGIGIVHYNCGIAAQASIIRQAKSLKHPIASDA--GVKFPEYEITSLD 121
Query: 128 DFDGSNYVFVTESGTRRS-RILGYVTKSDWE--NLSDNKVKIFDYMRDC-SSNVSVPANY 183
F S++VFV ++GT + ++LGYVTKS W+ N ++KI+DYM+ C SS+ VP
Sbjct: 122 AFGPSSFVFVEQTGTMTTPKLLGYVTKSQWKRMNYEQREMKIYDYMKSCDSSDYCVPWEI 181
Query: 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243
D +++ VLE FVVLE+DGE ++VVT++D++R+KGYP G GTVGPDG+WMVGAAI
Sbjct: 182 DFEKLEFVLEDKQKGFVVLERDGETVNVVTKDDIQRVKGYPKSGPGTVGPDGEWMVGAAI 241
Query: 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQA 303
GTRESDKERLEHLV GVN VVLDSSQGNS +Q+EMIKY KKTYPELDVIGGNVVTMYQA
Sbjct: 242 GTRESDKERLEHLVNVGVNAVVLDSSQGNSIYQLEMIKYVKKTYPELDVIGGNVVTMYQA 301
Query: 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363
QNLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV SIAAQSG+PVIADGGISNS
Sbjct: 302 QNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVCSIAAQSGIPVIADGGISNS 361
Query: 364 GHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLG 423
GHIVKALVLGASTVMMGSFLAGSTEAPG Y Y NG+R+KKYRGMGSLEAMTKGSDQRYLG
Sbjct: 362 GHIVKALVLGASTVMMGSFLAGSTEAPGGYEYTNGKRIKKYRGMGSLEAMTKGSDQRYLG 421
Query: 424 DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483
D+ KLKIAQGVVGAVADKGSVLK IPYTM AVKQGFQDLGASSLQSAH LLRS LRLE
Sbjct: 422 DQTKLKIAQGVVGAVADKGSVLKLIPYTMHAVKQGFQDLGASSLQSAHGLLRSNILRLEA 481
Query: 484 RTGAAQVEGGVHGLVSYEKKSF 505
RTGAAQVEGGVHGLVSYEKKSF
Sbjct: 482 RTGAAQVEGGVHGLVSYEKKSF 503
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101315|ref|XP_002312229.1| predicted protein [Populus trichocarpa] gi|222852049|gb|EEE89596.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/499 (76%), Positives = 435/499 (87%), Gaps = 4/499 (0%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
EDGF A++LF+QGYSYTYDDVIFLPHYIDFP DAV+LST+L+RN+ LS+P V+SPMDTV
Sbjct: 5 FEDGFPAEKLFNQGYSYTYDDVIFLPHYIDFPTDAVNLSTKLSRNVPLSIPWVSSPMDTV 64
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
TE YMA+AMAALGGIGIVHSN T ++QA ++ S KSRRVPI SS VFKAPD I D
Sbjct: 65 TESYMASAMAALGGIGIVHSNVTPSEQADMIRSVKSRRVPILSSP--VFKAPDSRIADEF 122
Query: 128 DFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQ 187
D +V VT+SGT+++++LGYV KSDW L D ++K+ + MR +NV VP +YDL Q
Sbjct: 123 DSHDVPFVLVTQSGTQKTKLLGYVAKSDWLGLKDKEIKLGEVMR-TDANVCVPWDYDLRQ 181
Query: 188 IDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRE 247
ID L++ DFVV+E+ GE +D VT+E+V+R+KGYP LGKGTVG DG+WMVGAAIGTR+
Sbjct: 182 IDGKLKEEGRDFVVVEEGGEVVDAVTKEEVDRVKGYPKLGKGTVGSDGRWMVGAAIGTRD 241
Query: 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLI 307
SDKERLE LVKAGV+V+VLDSSQGNS +Q+EMIKY K+TYPELDVIGGNVVTM QAQNLI
Sbjct: 242 SDKERLEQLVKAGVDVIVLDSSQGNSVYQVEMIKYVKQTYPELDVIGGNVVTMSQAQNLI 301
Query: 308 EAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367
+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG+PVIADGGIS SGHIV
Sbjct: 302 KAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGIPVIADGGISFSGHIV 361
Query: 368 KALVLGASTVMMGSFLAGSTEAPGAYVYQNGR-RVKKYRGMGSLEAMTKGSDQRYLGDKA 426
KALV GASTVMMGSFLAGSTEAPGAY + + RVKKYRGMGSLEAMTKGSDQRYLGD A
Sbjct: 362 KALVHGASTVMMGSFLAGSTEAPGAYENSDKKCRVKKYRGMGSLEAMTKGSDQRYLGDTA 421
Query: 427 KLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTG 486
KLKIAQGVVGAVADKGSVLK +PYTMQAVKQGFQDLGASSLQSAHDLLRS+TLRLEVRT
Sbjct: 422 KLKIAQGVVGAVADKGSVLKLVPYTMQAVKQGFQDLGASSLQSAHDLLRSKTLRLEVRTA 481
Query: 487 AAQVEGGVHGLVSYEKKSF 505
AAQVEGGVHGL S+EKK+F
Sbjct: 482 AAQVEGGVHGLTSHEKKAF 500
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75148854|sp|Q84XA3.1|IMDH_VIGUN RecName: Full=Inosine-5'-monophosphate dehydrogenase; Short=IMP dehydrogenase; Short=IMPD; Short=IMPDH gi|28413147|gb|AAO40253.1| inosine monophosphate dehydrogenase [Vigna unguiculata] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/506 (74%), Positives = 419/506 (82%), Gaps = 5/506 (0%)
Query: 1 MDFSPLPIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCV 60
MDF+P PIEDGF+A++LFSQG+SYTYDDVIFLPHYIDF DAV LSTRLTR + L++P V
Sbjct: 1 MDFTPPPIEDGFTAEKLFSQGFSYTYDDVIFLPHYIDFAADAVDLSTRLTRRLPLAVPLV 60
Query: 61 ASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPD 120
ASPMDTV+E MA+AMA+LGGI IVHSN AA QA LV +AKSRRVPI S F AP
Sbjct: 61 ASPMDTVSESAMASAMASLGGIAIVHSNVPAAAQASLVRAAKSRRVPILSEP--AFAAPS 118
Query: 121 GCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180
I +DF S ++ VT+ G ++LGYV K DW N D +++ DYM P
Sbjct: 119 AVIEHEDDFAASPFLLVTDIGAAGGKLLGYVAKRDWTNQKDKSLRVGDYMAPPPRRA--P 176
Query: 181 ANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLG-KGTVGPDGKWMV 239
N DL +I E++E V LE+DGE +D+V RE+VER+KGYP L TVGPDG++MV
Sbjct: 177 WNADLNKIHEIMENEKSGAVALERDGEVVDLVVREEVERVKGYPKLAAPATVGPDGEFMV 236
Query: 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVT 299
GAA+GTRE DKERL+HLVKAGVNVVVLDSSQGNS +Q+EM+KY K YPELDVIGGNVVT
Sbjct: 237 GAAMGTREDDKERLKHLVKAGVNVVVLDSSQGNSIYQLEMVKYVKSVYPELDVIGGNVVT 296
Query: 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG 359
MYQA+NLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIA +SGVPVIADGG
Sbjct: 297 MYQAENLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAYKSGVPVIADGG 356
Query: 360 ISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQ 419
ISNSGHIVKAL LGAST MMGSFLAGS EAPGAYVYQNG+RVKKYRGMGSLEAMTKGSD
Sbjct: 357 ISNSGHIVKALSLGASTAMMGSFLAGSHEAPGAYVYQNGQRVKKYRGMGSLEAMTKGSDA 416
Query: 420 RYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTL 479
RYLGD AKLKIAQGVVGAV DKGSVL FIPYT+QAV+QGFQD+GASSLQSAHDLLRSR L
Sbjct: 417 RYLGDTAKLKIAQGVVGAVKDKGSVLNFIPYTLQAVRQGFQDIGASSLQSAHDLLRSRVL 476
Query: 480 RLEVRTGAAQVEGGVHGLVSYEKKSF 505
RLEVRTGAAQVEGGVHGLVSYEKK +
Sbjct: 477 RLEVRTGAAQVEGGVHGLVSYEKKYY 502
|
Source: Vigna unguiculata Species: Vigna unguiculata Genus: Vigna Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842729|ref|XP_002889246.1| hypothetical protein ARALYDRAFT_477114 [Arabidopsis lyrata subsp. lyrata] gi|297335087|gb|EFH65505.1| hypothetical protein ARALYDRAFT_477114 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/502 (76%), Positives = 429/502 (85%), Gaps = 6/502 (1%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
EDGF+AD+LF+QGYSYTYDDVIFLPHYIDF DAVSLSTRL+R + LS+PCV+SPMDTV
Sbjct: 4 FEDGFAADKLFAQGYSYTYDDVIFLPHYIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63
Query: 68 TEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E +MAAAMAALGGIGIVH NC A QA ++ AKS + PI S + K P+ I +
Sbjct: 64 SESHMAAAMAALGGIGIVHYNCDIAAQASIIRQAKSLKHPIASDA--GVKFPEYEITSLD 121
Query: 128 DFDGSNYVFVTESGTRRS-RILGYVTKSDWE--NLSDNKVKIFDYMRDC-SSNVSVPANY 183
F S++VFVT++GT + ++LGYV+KS W N ++KI+DYM+ C SS+ VP +
Sbjct: 122 AFGPSSFVFVTQTGTMTTPKLLGYVSKSQWTRMNYEQREMKIYDYMKSCDSSDYCVPWDI 181
Query: 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243
DL +++ VLE FVVLE+DGE ++VVT++D+ER+KGYP G GTVGPDG+WMVGAAI
Sbjct: 182 DLEKLEFVLEDKQKGFVVLERDGETVNVVTKDDIERVKGYPKSGPGTVGPDGEWMVGAAI 241
Query: 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQA 303
GTRESDKERLEHLV AGVN VV DSSQGNS +Q+EMIKY K TYPELDVIGGNVVTMYQA
Sbjct: 242 GTRESDKERLEHLVDAGVNAVVFDSSQGNSIYQLEMIKYVKNTYPELDVIGGNVVTMYQA 301
Query: 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363
QNLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV SIAAQSG+PVIADGGISNS
Sbjct: 302 QNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVCSIAAQSGIPVIADGGISNS 361
Query: 364 GHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLG 423
GHIVKALVLGASTVMMGSFLAGSTEAPG Y Y+NG+R+KKYRGMGSLEAMTKGSDQRYLG
Sbjct: 362 GHIVKALVLGASTVMMGSFLAGSTEAPGGYEYKNGKRIKKYRGMGSLEAMTKGSDQRYLG 421
Query: 424 DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483
DK KLKIAQGVVGAVADKGSVLK IPYTM AVKQGFQDLGASSLQSAHDLLRS LRLE
Sbjct: 422 DKTKLKIAQGVVGAVADKGSVLKLIPYTMHAVKQGFQDLGASSLQSAHDLLRSDILRLEA 481
Query: 484 RTGAAQVEGGVHGLVSYEKKSF 505
RTGAAQVEGGVHGLVSYEKKSF
Sbjct: 482 RTGAAQVEGGVHGLVSYEKKSF 503
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 505 | ||||||
| TAIR|locus:2032775 | 502 | AT1G16350 [Arabidopsis thalian | 0.980 | 0.986 | 0.756 | 2.9e-199 | |
| TAIR|locus:2206365 | 503 | AT1G79470 [Arabidopsis thalian | 0.982 | 0.986 | 0.741 | 3.1e-193 | |
| RGD|735092 | 514 | Impdh2 "IMP (inosine 5'-monoph | 0.974 | 0.957 | 0.491 | 9.8e-116 | |
| UNIPROTKB|P12268 | 514 | IMPDH2 "Inosine-5'-monophospha | 0.974 | 0.957 | 0.489 | 1.6e-115 | |
| UNIPROTKB|F1SKI5 | 514 | IMPDH2 "Inosine-5'-monophospha | 0.974 | 0.957 | 0.489 | 1.6e-115 | |
| UNIPROTKB|E2QTZ9 | 514 | IMPDH2 "Inosine-5'-monophospha | 0.974 | 0.957 | 0.489 | 2e-115 | |
| ZFIN|ZDB-GENE-030219-206 | 539 | impdh1b "inosine 5'-phosphate | 0.974 | 0.912 | 0.479 | 2e-115 | |
| DICTYBASE|DDB_G0283701 | 515 | guaB "IMP dehydrogenase" [Dict | 0.956 | 0.937 | 0.489 | 6.4e-115 | |
| MGI|MGI:109367 | 514 | Impdh2 "inosine 5'-phosphate d | 0.974 | 0.957 | 0.487 | 1.1e-114 | |
| UNIPROTKB|P12269 | 514 | IMPDH2 "Inosine-5'-monophospha | 0.974 | 0.957 | 0.485 | 3.8e-114 |
| TAIR|locus:2032775 AT1G16350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1929 (684.1 bits), Expect = 2.9e-199, P = 2.9e-199
Identities = 378/500 (75%), Positives = 430/500 (86%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
EDGFSA++LFSQGYSYTYDDVIFLPH+IDF DAVSLSTRL++ + LS+PCVASPMDTV+
Sbjct: 5 EDGFSAEKLFSQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSKRVPLSIPCVASPMDTVS 64
Query: 69 EDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAND 128
E + LGGIGIVH NC QA ++ AKS +VPI S + VFK P+ I +D
Sbjct: 65 ESHMAAAMAALGGIGIVHYNCDIDTQASVIRHAKSLQVPIASDA--VFKCPEHQIGSVDD 122
Query: 129 FDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNK--VKIFDYMRDCSS-NVSVPANYDL 185
F S++VFV+++GT ++LGYV+KS+W ++ D++ VKI+DYM+ C + + VP + DL
Sbjct: 123 FGPSSFVFVSQTGTLTPKLLGYVSKSEWSSMKDDQKEVKIYDYMKSCENKDYYVPWDIDL 182
Query: 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGT 245
+I+ VLE FVVLEK+GE ++VVT++DVER+KGYP LG GTVG D KWMVGAAIGT
Sbjct: 183 DKIEAVLEDKQKGFVVLEKEGETVNVVTKDDVERVKGYPKLGSGTVGADKKWMVGAAIGT 242
Query: 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQN 305
RESDKERLEHLVKAG NVVVLDSSQGNS +Q+EMIKY K TYPELDV+GGNVVTMYQA+N
Sbjct: 243 RESDKERLEHLVKAGANVVVLDSSQGNSIYQLEMIKYVKNTYPELDVVGGNVVTMYQAEN 302
Query: 306 LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365
LI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVS++AAQ GVPVIADGGISNSGH
Sbjct: 303 LIKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSTLAAQHGVPVIADGGISNSGH 362
Query: 366 IVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDK 425
IVKALVLGASTVMMGSFLAGSTEAPGAY Y+NGRRVKKYRGMGSLEAMTKGSDQRYLGD
Sbjct: 363 IVKALVLGASTVMMGSFLAGSTEAPGAYEYRNGRRVKKYRGMGSLEAMTKGSDQRYLGDT 422
Query: 426 AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRT 485
AKLKIAQGVVGAVADKGSVLKFIPYTM AVKQGFQDLGASSLQSAH+LLR TLRLE RT
Sbjct: 423 AKLKIAQGVVGAVADKGSVLKFIPYTMHAVKQGFQDLGASSLQSAHELLRDNTLRLEART 482
Query: 486 GAAQVEGGVHGLVSYEKKSF 505
GAAQ+EGG+HGLVSYEKKSF
Sbjct: 483 GAAQIEGGIHGLVSYEKKSF 502
|
|
| TAIR|locus:2206365 AT1G79470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1872 (664.0 bits), Expect = 3.1e-193, P = 3.1e-193
Identities = 372/502 (74%), Positives = 420/502 (83%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
+EDGF AD+LF+QGYSYTYDDVIFLPH+IDF DAVSLSTRL+R + LS+PCV+SPMDTV
Sbjct: 4 LEDGFPADKLFAQGYSYTYDDVIFLPHFIDFSTDAVSLSTRLSRRVPLSIPCVSSPMDTV 63
Query: 68 TEDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDAN 127
+E + LGGIGIVH NC A QA ++ AKS + PI +S V K P+ I +
Sbjct: 64 SESHMAAAMASLGGIGIVHYNCGIAAQASIIRQAKSLKHPI-ASDAGV-KFPEYEITSLD 121
Query: 128 DFDGSNYVFVTESGTRRS-RILGYVTKSDWE--NLSDNKVKIFDYMRDC-SSNVSVPANY 183
F S++VFV ++GT + ++LGYVTKS W+ N ++KI+DYM+ C SS+ VP
Sbjct: 122 AFGPSSFVFVEQTGTMTTPKLLGYVTKSQWKRMNYEQREMKIYDYMKSCDSSDYCVPWEI 181
Query: 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243
D +++ VLE FVVLE+DGE ++VVT++D++R+KGYP G GTVGPDG+WMVGAAI
Sbjct: 182 DFEKLEFVLEDKQKGFVVLERDGETVNVVTKDDIQRVKGYPKSGPGTVGPDGEWMVGAAI 241
Query: 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQA 303
GTRESDKERLEHLV GVN VVLDSSQGNS +Q+EMIKY KKTYPELDVIGGNVVTMYQA
Sbjct: 242 GTRESDKERLEHLVNVGVNAVVLDSSQGNSIYQLEMIKYVKKTYPELDVIGGNVVTMYQA 301
Query: 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363
QNLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV SIAAQSG+PVIADGGISNS
Sbjct: 302 QNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVCSIAAQSGIPVIADGGISNS 361
Query: 364 GHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLG 423
GHIVKALVLGASTVMMGSFLAGSTEAPG Y Y NG+R+KKYRGMGSLEAMTKGSDQRYLG
Sbjct: 362 GHIVKALVLGASTVMMGSFLAGSTEAPGGYEYTNGKRIKKYRGMGSLEAMTKGSDQRYLG 421
Query: 424 DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483
D+ KLKIAQGVVGAVADKGSVLK IPYTM AVKQGFQDLGASSLQSAH LLRS LRLE
Sbjct: 422 DQTKLKIAQGVVGAVADKGSVLKLIPYTMHAVKQGFQDLGASSLQSAHGLLRSNILRLEA 481
Query: 484 RTGAAQVEGGVHGLVSYEKKSF 505
RTGAAQVEGGVHGLVSYEKKSF
Sbjct: 482 RTGAAQVEGGVHGLVSYEKKSF 503
|
|
| RGD|735092 Impdh2 "IMP (inosine 5'-monophosphate) dehydrogenase 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 9.8e-116, Sum P(2) = 9.8e-116
Identities = 248/505 (49%), Positives = 318/505 (62%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGV 192
Query: 184 DLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ + ++ + E + ++ R D+++ + YP K T + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNESDELVAIIARTDLKKNRDYPLASKDT---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L AGV+VVVLDSSQGNS FQI MIKY K+ YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYIKEKYPNLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMGSGSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVHGL SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHGLHSYEKRLF 514
|
|
| UNIPROTKB|P12268 IMPDH2 "Inosine-5'-monophosphate dehydrogenase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
Identities = 247/505 (48%), Positives = 317/505 (62%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDCFLEEIMTKREDLVVAPAGI 192
Query: 184 DLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ + ++ +D E + ++ R D+++ + YP K + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASKDA---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L +AGV+VVVLDSSQGNS FQI MIKY K YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKDKYPNLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMGSGSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVH L SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHSLHSYEKRLF 514
|
|
| UNIPROTKB|F1SKI5 IMPDH2 "Inosine-5'-monophosphate dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1121 (399.7 bits), Expect = 1.6e-115, Sum P(2) = 1.6e-115
Identities = 247/505 (48%), Positives = 318/505 (62%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKAQHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGI 192
Query: 184 DLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ + ++ +D E + ++ R D+++ + YP K + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASKDA---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L +AGV+VVVLDSSQGNS FQI MIKY K+ YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPSLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMGSGSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVH L SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHSLHSYEKRLF 514
|
|
| UNIPROTKB|E2QTZ9 IMPDH2 "Inosine-5'-monophosphate dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1120 (399.3 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 247/505 (48%), Positives = 318/505 (62%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGI 192
Query: 184 DLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ + ++ +D E + ++ R D+++ + YP K + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNEDDELVAIIARTDLKKNRDYPLASKDA---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L +AGV+VVVLDSSQGNS FQI MIKY K+ YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLAQAGVDVVVLDSSQGNSIFQINMIKYIKEKYPTLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMGSGSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVH L SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHSLHSYEKRLF 514
|
|
| ZFIN|ZDB-GENE-030219-206 impdh1b "inosine 5'-phosphate dehydrogenase 1b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1112 (396.5 bits), Expect = 2.0e-115, Sum P(2) = 2.0e-115
Identities = 243/507 (47%), Positives = 326/507 (64%)
Query: 8 IEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV 67
+ DG +A+ LFS+G TY+D + LP +IDF D V L++ LT+ I L P ++SPMDTV
Sbjct: 39 VRDGHTAEELFSKGDGMTYNDFLILPGFIDFTSDEVDLTSALTKKITLKTPLISSPMDTV 98
Query: 68 TEDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND-- 125
TE +GGIGI+H NCT QA V K + V +P + D
Sbjct: 99 TESSMAIAMALMGGIGIIHHNCTPEFQANEVRKVKRFEQGFITDP--VVLSPHHTVGDVL 156
Query: 126 -ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLS--DNKVKIFDYMRDCSSNVSVPAN 182
A G + + +TE+G S+++G VT D + LS DN + + M V PA
Sbjct: 157 EAKVRHGFSGIPITETGKMGSKLVGIVTSRDIDFLSEKDNNKYLEEAMTKREDLVVAPAG 216
Query: 183 YDLGQIDEVLEKNDVDF--VVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVG 240
L + +++L+++ +V +KD E + ++ R D+++ + YP K + + + G
Sbjct: 217 VTLKEANDILQRSKKGKLPIVNDKD-ELVAIIARTDLKKNRDYPLASKDS---RKQLLCG 272
Query: 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTM 300
AAIGTRE DK RL+ L ++GV++VVLDSSQGNS +QI MI Y K+ YPEL V+GGNVVT
Sbjct: 273 AAIGTREDDKYRLDLLTQSGVDMVVLDSSQGNSVYQINMIHYIKQKYPELQVVGGNVVTA 332
Query: 301 YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI 360
QA+NLI+AGVD LRVGMG GSIC TQEV A GR Q T+VYKV+ A + GVPVIADGGI
Sbjct: 333 AQAKNLIDAGVDALRVGMGCGSICITQEVMACGRPQGTSVYKVAEYARRFGVPVIADGGI 392
Query: 361 SNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKG--SD 418
GH+VKAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S
Sbjct: 393 QTVGHVVKALSLGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKNTSSQ 452
Query: 419 QRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRT 478
+RY + K+K+AQGV G+V DKGS+ KF+PY + ++ G QD+GA SL ++ S
Sbjct: 453 KRYFSEGDKVKVAQGVSGSVQDKGSIHKFVPYLIAGIQHGCQDIGAKSLSVLRSMMYSGE 512
Query: 479 LRLEVRTGAAQVEGGVHGLVSYEKKSF 505
L+ E RT +AQVEGGVHGL S+EK+ +
Sbjct: 513 LKFEKRTMSAQVEGGVHGLHSFEKRLY 539
|
|
| DICTYBASE|DDB_G0283701 guaB "IMP dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 245/501 (48%), Positives = 329/501 (65%)
Query: 10 DGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTE 69
DGF LF Q + YTYDD+I LP +I+F D VSL T+LT+NI L+ P V+SPMDTVTE
Sbjct: 22 DGFDCFELFQQRHGYTYDDLIMLPGHINFSADDVSLKTKLTKNISLNAPLVSSPMDTVTE 81
Query: 70 DYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSL--D-VFKAPDGCINDA 126
LGGIGI+H N T +Q VV K +V F + D + +P ++D
Sbjct: 82 HLMAINMALLGGIGIIHYNNTVEEQ---VVEVK--KVKRFKNGFITDPIVLSPTHKLSDV 136
Query: 127 NDFDGSNYVF----VTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182
D Y F +T++G +++G VT D + + D + + M + ++ N
Sbjct: 137 -DMIKQKYGFSGIPITDTGRIGGKLVGIVTSRDTDFIKDRSTTLSEVMT--TDLITGQQN 193
Query: 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGA 241
L + + +L+ + + D GE + + +R+D+ + + +P K + K +VGA
Sbjct: 194 CTLEEANSILKSCKKGKLPIVNDKGELVALASRDDLVKNRDFPMATKDH--ENKKLLVGA 251
Query: 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMY 301
A+GTRE+DKERL L AGV+VV+LDSSQG+S++Q EMI++ K+ YP++DVIGGNVVT
Sbjct: 252 ALGTRETDKERLAALSDAGVDVVILDSSQGDSTYQREMIRFIKRNYPKIDVIGGNVVTTS 311
Query: 302 QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS 361
Q ++LI+AGVDGLRVGMG GSICTTQEV A GR QATAV+K + ++Q VP+IADGGI
Sbjct: 312 QCESLIQAGVDGLRVGMGVGSICTTQEVMACGRPQATAVFKCALYSSQYNVPIIADGGIR 371
Query: 362 NSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRY 421
GHI+K L LGAS+VMMGS LAG+ EAPG Y Y++G R+KKYRGMGSLEAM KG DQRY
Sbjct: 372 TIGHIIKGLSLGASSVMMGSMLAGTEEAPGDYFYKDGMRLKKYRGMGSLEAMVKGGDQRY 431
Query: 422 LGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRL 481
+ K+K+AQGV G+V DKGSV KF+PY +Q +K G QDLG +S+ + + + +R
Sbjct: 432 FSETDKIKVAQGVSGSVVDKGSVKKFVPYLIQGIKHGLQDLGCNSVTNLRESVYGGKVRF 491
Query: 482 EVRTGAAQVEGGVHGLVSYEK 502
EVRT AAQVEG VH L SYEK
Sbjct: 492 EVRTAAAQVEGSVHSLFSYEK 512
|
|
| MGI|MGI:109367 Impdh2 "inosine 5'-phosphate dehydrogenase 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 1.1e-114, Sum P(2) = 1.1e-114
Identities = 246/505 (48%), Positives = 317/505 (62%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGV 192
Query: 184 DLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ + ++ ++ E + ++ R D+++ + YP K + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNRDYPLASKDA---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L AGV+VVVLDSSQGNS FQI MIKY K+ YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYIKEKYPSLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMGSGSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGSGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVH L SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHSLHSYEKRLF 514
|
|
| UNIPROTKB|P12269 IMPDH2 "Inosine-5'-monophosphate dehydrogenase 2" [Cricetulus griseus (taxid:10029)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 245/505 (48%), Positives = 316/505 (62%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
+DG +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVT
Sbjct: 15 DDGLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT 74
Query: 69 EDYXXXXXXXLGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND--- 125
E GGIG +H NCT QA V K + V +P + D
Sbjct: 75 EAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYEQGFITDP--VVLSPKDRVRDVFE 132
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIF--DYMRDCSSNVSVPANY 183
A G + +T++G SR++G ++ D + L + + F + M V PA
Sbjct: 133 AKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPAGI 192
Query: 184 DLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +E+L+++ + ++ ++ E + ++ R D+++ + YP K + + GAA
Sbjct: 193 TLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNRDYPLASKDA---KKQLLCGAA 249
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGT E DK RL+ L AGV+VVVLDSSQGNS FQI MIKY K+ YP L VIGGNVVT Q
Sbjct: 250 IGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQ 309
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AGVD LRVGMG GSIC TQEV A GR QATAVYKVS A + GVPVIADGGI N
Sbjct: 310 AKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQN 369
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSDQR 420
GHI KAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K S R
Sbjct: 370 VGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNR 429
Query: 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
Y + K+K+AQGV GAV DKGS+ KF+PY + ++ QD+GA SL ++ S L+
Sbjct: 430 YFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELK 489
Query: 481 LEVRTGAAQVEGGVHGLVSYEKKSF 505
E RT +AQVEGGVH L SYEK+ F
Sbjct: 490 FEKRTSSAQVEGGVHSLHSYEKRLF 514
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P12269 | IMDH2_CRIGR | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4950 | 0.9742 | 0.9571 | yes | no |
| P12268 | IMDH2_HUMAN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4990 | 0.9742 | 0.9571 | yes | no |
| Q8F4Q4 | IMDH_LEPIN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4424 | 0.9584 | 0.9527 | yes | no |
| Q8CMQ7 | IMDH_STAES | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3680 | 0.8693 | 0.8995 | yes | no |
| Q07152 | IMDH_DROME | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4882 | 0.9663 | 0.9087 | yes | no |
| E9PU28 | IMDH2_RAT | 1, ., 1, ., 1, ., 2, 0, 5 | 0.5009 | 0.9742 | 0.9571 | yes | no |
| O50316 | IMDH_CHLP8 | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3787 | 0.8217 | 0.8400 | yes | no |
| P47996 | IMDH1_ARATH | 1, ., 1, ., 1, ., 2, 0, 5 | 0.7509 | 0.9821 | 0.9860 | no | no |
| P99106 | IMDH_STAAN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| Q5KP44 | IMDH_CRYNJ | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4627 | 0.9722 | 0.9025 | yes | no |
| Q84XA3 | IMDH_VIGUN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.7411 | 0.9920 | 0.9980 | N/A | no |
| Q4WHZ9 | IMDH_ASPFU | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4637 | 0.9564 | 0.8846 | yes | no |
| F6S675 | IMDH1_XENTR | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4940 | 0.9762 | 0.9628 | yes | no |
| P38697 | IMDH2_YEAST | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4596 | 0.9762 | 0.9426 | yes | no |
| Q2G0Y7 | IMDH_STAA8 | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| Q9GZH3 | IMDH_CAEEL | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3821 | 0.9782 | 0.9250 | yes | no |
| Q49UU8 | IMDH_STAS1 | 1, ., 1, ., 1, ., 2, 0, 5 | 0.375 | 0.8752 | 0.9057 | yes | no |
| Q6GJQ7 | IMDH_STAAR | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| Q6GC82 | IMDH_STAAS | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| Q5HRX2 | IMDH_STAEQ | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3680 | 0.8693 | 0.8995 | yes | no |
| P65169 | IMDH_STAAM | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| Q8NY70 | IMDH_STAAW | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| A0JNA3 | IMDH1_BOVIN | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4862 | 0.9683 | 0.9513 | yes | no |
| Q9KGN8 | IMDH_BACHD | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3522 | 0.9207 | 0.9587 | yes | no |
| Q54QQ0 | IMDH_DICDI | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4930 | 0.9445 | 0.9262 | yes | no |
| P24547 | IMDH2_MOUSE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4970 | 0.9742 | 0.9571 | yes | no |
| Q2YVL6 | IMDH_STAAB | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| Q9SA34 | IMDH2_ARATH | 1, ., 1, ., 1, ., 2, 0, 5 | 0.7684 | 0.9821 | 0.9880 | yes | no |
| O67820 | IMDH_AQUAE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3557 | 0.9108 | 0.9387 | yes | no |
| Q5HIQ7 | IMDH_STAAC | 1, ., 1, ., 1, ., 2, 0, 5 | 0.3790 | 0.8831 | 0.9139 | yes | no |
| Q5RGV1 | IMDH3_DANRE | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4881 | 0.9683 | 0.9513 | yes | no |
| O14344 | IMDH_SCHPO | 1, ., 1, ., 1, ., 2, 0, 5 | 0.4335 | 0.9702 | 0.9351 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 505 | |||
| PLN02274 | 505 | PLN02274, PLN02274, inosine-5'-monophosphate dehyd | 0.0 | |
| TIGR01302 | 450 | TIGR01302, IMP_dehydrog, inosine-5'-monophosphate | 0.0 | |
| pfam00478 | 467 | pfam00478, IMPDH, IMP dehydrogenase / GMP reductas | 0.0 | |
| PTZ00314 | 495 | PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd | 0.0 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 1e-126 | |
| PRK05567 | 486 | PRK05567, PRK05567, inosine 5'-monophosphate dehyd | 1e-117 | |
| PRK07107 | 502 | PRK07107, PRK07107, inosine 5-monophosphate dehydr | 3e-64 | |
| PRK06843 | 404 | PRK06843, PRK06843, inosine 5-monophosphate dehydr | 3e-52 | |
| TIGR01303 | 475 | TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family | 7e-43 | |
| PRK07807 | 479 | PRK07807, PRK07807, inosine 5-monophosphate dehydr | 2e-42 | |
| TIGR01305 | 343 | TIGR01305, GMP_reduct_1, guanosine monophosphate r | 2e-30 | |
| PRK05096 | 346 | PRK05096, PRK05096, guanosine 5'-monophosphate oxi | 5e-28 | |
| PRK05458 | 326 | PRK05458, PRK05458, guanosine 5'-monophosphate oxi | 5e-28 | |
| cd00381 | 325 | cd00381, IMPDH, IMPDH: The catalytic domain of the | 2e-27 | |
| TIGR01306 | 321 | TIGR01306, GMP_reduct_2, guanosine monophosphate r | 3e-25 | |
| PRK08649 | 368 | PRK08649, PRK08649, inosine 5-monophosphate dehydr | 7e-24 | |
| COG0516 | 170 | COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu | 2e-21 | |
| TIGR01304 | 369 | TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family | 2e-15 | |
| COG0516 | 170 | COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nu | 4e-15 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 4e-10 | |
| cd04602 | 114 | cd04602, CBS_pair_IMPDH_2, This cd contains two ta | 7e-10 | |
| COG2070 | 336 | COG2070, COG2070, Dioxygenases related to 2-nitrop | 2e-07 | |
| cd04736 | 361 | cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li | 2e-06 | |
| pfam03060 | 329 | pfam03060, NMO, Nitronate monooxygenase | 3e-05 | |
| pfam01070 | 302 | pfam01070, FMN_dh, FMN-dependent dehydrogenase | 4e-05 | |
| cd02809 | 299 | cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom | 9e-05 | |
| cd02811 | 326 | cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimeth | 1e-04 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 2e-04 | |
| COG1304 | 360 | COG1304, idi, Isopentenyl diphosphate isomerase (B | 2e-04 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 3e-04 | |
| PRK05437 | 352 | PRK05437, PRK05437, isopentenyl pyrophosphate isom | 3e-04 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 0.004 |
| >gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 889 bits (2299), Expect = 0.0
Identities = 374/503 (74%), Positives = 419/503 (83%), Gaps = 6/503 (1%)
Query: 7 PIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDT 66
EDGFSA++LF+QG SYTYDDVIF P YIDFP DAV LSTRL+RNI LS+PCV+SPMDT
Sbjct: 5 AFEDGFSAEKLFNQGVSYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDT 64
Query: 67 VTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDA 126
VTE MA AMAALGGIGIVH N TA +QA +V AKSRRV S V K+P I+
Sbjct: 65 VTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRRVGFVSDP--VVKSPSSTISSL 122
Query: 127 NDFDGSN---YVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANY 183
++ S V VTE+GT S++LGYVTK DW+ ++D + K+ + M V+ PA
Sbjct: 123 DELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETKLSEVMTSDDDLVTAPAGI 182
Query: 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
DL + + VL+ + + L + GE +D+VTR DV+R+KGYP LGK +VG DGK +VGAA
Sbjct: 183 DLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAA 242
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
IGTRESDKERLEHLVKAGV+VVVLDSSQG+S +Q+EMIKY KKTYPELDVIGGNVVTMYQ
Sbjct: 243 IGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQ 302
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
AQNLI+AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV+SIAAQ GVPVIADGGISN
Sbjct: 303 AQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISN 362
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422
SGHIVKAL LGASTVMMGSFLAG+TEAPG Y YQ+G RVKKYRGMGSLEAMTKGSDQRYL
Sbjct: 363 SGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYL 422
Query: 423 GDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLE 482
GD AKLKIAQGV GAVADKGSVLKF+PYTMQAVKQGFQDLGASSLQSAH+LLRS TLRLE
Sbjct: 423 GDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHELLRSGTLRLE 482
Query: 483 VRTGAAQVEGGVHGLVSYEKKSF 505
VRTGAAQVEGGVHGLVSYEKK+F
Sbjct: 483 VRTGAAQVEGGVHGLVSYEKKAF 505
|
Length = 505 |
| >gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 567 bits (1464), Expect = 0.0
Identities = 215/455 (47%), Positives = 289/455 (63%), Gaps = 12/455 (2%)
Query: 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGI 82
T+DDV+ LP +ID D V LSTR+TRNI L++P ++SPMDTVTE MA AMA GGI
Sbjct: 1 GLTFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGI 60
Query: 83 GIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSN---YVFVTE 139
G++H N + +QA V K I S V +P+ + D + + V E
Sbjct: 61 GVIHRNMSIEEQAEQVKRVKRAENGIISDP--VTISPETTVADVLELMERKGISGIPVVE 118
Query: 140 SGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVD- 198
G +++G +TK D + D + + M ++VP DL + +VL ++ ++
Sbjct: 119 DGDMTGKLVGIITKRDIRFVKDKGKPVSEVM-TREEVITVPEGIDLEEALKVLHEHRIEK 177
Query: 199 FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258
V++K+GE + ++T +D+ + + +P+ K +G+ +VGAA+GTRE DKER E LVK
Sbjct: 178 LPVVDKNGELVGLITMKDIVKRRKFPHASKD---ENGRLIVGAAVGTREFDKERAEALVK 234
Query: 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM 318
AGV+V+V+DSS G+S + I+ IK KKTYP+LD+I GNV T QA+ LI+AG DGLRVG+
Sbjct: 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGI 294
Query: 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378
G GSICTT+ V VG Q TAVY V+ AAQSG+PVIADGGI SG IVKAL GA VM
Sbjct: 295 GPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVM 354
Query: 379 MGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD--KAKLKIAQGVVG 436
+GS LAG+TE+PG Y NGRR K+YRGMGSL AMTKGS RYL D K K + +GV G
Sbjct: 355 LGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKFVPEGVEG 414
Query: 437 AVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471
AV KGSVL+ +P + +K G +GA S+
Sbjct: 415 AVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449
|
This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450 |
| >gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Score = 554 bits (1430), Expect = 0.0
Identities = 210/482 (43%), Positives = 288/482 (59%), Gaps = 23/482 (4%)
Query: 22 YSYTYDDVIFLPHY-IDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALG 80
T+DDV+ LP + V LST+LTRNI L++P V++ MDTVTE MA AMA G
Sbjct: 1 KGLTFDDVLLLPGRSVLPSRSDVDLSTKLTRNITLNIPLVSANMDTVTESRMAIAMAREG 60
Query: 81 GIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDF---DGSNYVFV 137
GIG++H N + +QA V K + V +PD + +A + G + V V
Sbjct: 61 GIGVIHKNMSIEEQAEEVRKVKRFESGFITD--PVTVSPDTTVAEALELKERYGISGVPV 118
Query: 138 TESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDV 197
TE G ++G T D + LS K+ M V+ P L + +E+L ++ +
Sbjct: 119 TEDGKLLGGLVGIRTSRDIDFLS----KVSVVMTMTEDLVTAPEGITLEEANEILHEHKI 174
Query: 198 D-FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256
+ +++ DGE + ++TR+D+E+ + YPN K G+ +VGAA+GTRE D ER E L
Sbjct: 175 EKLPIVDDDGELVGLITRKDIEKARDYPNASKD---AQGRLLVGAAVGTREDDLERAEAL 231
Query: 257 VKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316
V+AGV+V+V+DS+ G+S + +EMIK+ KK YPELDVI GNVVT A+ LI+AG D ++V
Sbjct: 232 VEAGVDVIVIDSAHGHSEYVLEMIKWIKKKYPELDVIAGNVVTAEAARELIDAGADAVKV 291
Query: 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAST 376
G+G GSICTT+EV VGR Q TAVY+V+ A + GVPVIADGGI SG I KAL GAS
Sbjct: 292 GIGPGSICTTREVAGVGRPQLTAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASA 351
Query: 377 VMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT--KGSDQRYLGDKAKLKIAQGV 434
VM+GS LAG+ E+PG Y+ +NGR+ K+YRGMGSL AM KGS RY K + +GV
Sbjct: 352 VMLGSLLAGTEESPGEYIERNGRKYKEYRGMGSLGAMEKHKGSKDRYFQAGDKKLVPEGV 411
Query: 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQ-VEGG 493
G V KGSV I + ++ +GA+SL+ + VR +A EG
Sbjct: 412 EGRVPYKGSVKDTIHQLLGGLRSSMGYVGAASLKELREKAF------FVRVTSAGLREGH 465
Query: 494 VH 495
VH
Sbjct: 466 VH 467
|
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467 |
| >gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 554 bits (1429), Expect = 0.0
Identities = 244/500 (48%), Positives = 322/500 (64%), Gaps = 11/500 (2%)
Query: 8 IEDGFSADRLF-SQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDT 66
+ DG SAD LF S TYDDVI LP YIDF D V LSTRLTRNI L +P V+SPMDT
Sbjct: 1 MADGMSADELFNSIPTGLTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDT 60
Query: 67 VTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDA 126
VTE MA AMA +GGIG++H+NC+ +Q V K + +P+ + D
Sbjct: 61 VTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFENGFIMDPYVL--SPNHTVADV 118
Query: 127 ---NDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANY 183
+ G + + +T G ++LG VT D + + D + + M V
Sbjct: 119 LEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTPVSEVMTPREKLVVGNTPI 178
Query: 184 DLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
L + +EVL ++ + ++ +GE + +V+R D+++ +GYPN + +G+ +VGAA
Sbjct: 179 SLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDS---NGQLLVGAA 235
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQ 302
I TR D ER L++AGV+V+V+DSSQGNS +QI+MIK K YP +D+I GNVVT Q
Sbjct: 236 ISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQ 295
Query: 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362
A+NLI+AG DGLR+GMGSGSIC TQEVCAVGR QA+AVY V+ A + GVP IADGGI N
Sbjct: 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKN 355
Query: 363 SGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAM-TKGSDQRY 421
SG I KAL LGA VM+GS LAG+ EAPG Y +++G R+K YRGMGSLEAM +K S +RY
Sbjct: 356 SGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERY 415
Query: 422 LGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRL 481
L + +K+AQGV G+V DKGSV K IPY ++ VK G Q +GA S+ H+ L S +R
Sbjct: 416 LDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEKLYSGQVRF 475
Query: 482 EVRTGAAQVEGGVHGLVSYE 501
E R+G+A EGGVH L +E
Sbjct: 476 ERRSGSAIKEGGVHSLHKFE 495
|
Length = 495 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 370 bits (953), Expect = e-126
Identities = 132/241 (54%), Positives = 169/241 (70%)
Query: 235 GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG 294
G+ +VGAA+GTRE DKER E LV+AGV+V+V+DS+ G+S + IEMIK+ KK YP +DVI
Sbjct: 81 GRLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA 140
Query: 295 GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354
GNVVT A++LI+AG DG++VG+G GSICTT+ V VG QATAV V++ A GVPV
Sbjct: 141 GNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPV 200
Query: 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT 414
IADGGI SG IVKAL GA VM+GS LAG+ E+PG Y+ NG+R K+YRGMGSL AM
Sbjct: 201 IADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMK 260
Query: 415 KGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474
KG RY G++AK + +GV G V KGSV +P + ++ GA SL+ +
Sbjct: 261 KGGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKA 320
Query: 475 R 475
R
Sbjct: 321 R 321
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 353 bits (909), Expect = e-117
Identities = 180/485 (37%), Positives = 273/485 (56%), Gaps = 34/485 (7%)
Query: 24 YTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIG 83
T+DDV+ +P + + + V LST+LT+NI L++P +++ MDTVTE MA AMA GGIG
Sbjct: 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIG 68
Query: 84 IVHSNCTAADQARLVVSAKSRRVPIFSSSL---DVFKAPDGCINDA------NDFDGSNY 134
++H N + +QA V R+V S + V PD + +A G
Sbjct: 69 VIHKNMSIEEQAEEV-----RKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISG--V 121
Query: 135 VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN-VSVPANYDLGQIDEVLE 193
V E+G +++G +T D +D + + M V+VP L + E+L
Sbjct: 122 PVVDENG----KLVGIITNRDVRFETDLSQPVSEVM--TKERLVTVPEGTTLEEALELLH 175
Query: 194 KNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKER 252
++ ++ + V++ +G ++T +D+E+ + +PN K G+ VGAA+G ++ER
Sbjct: 176 EHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDE---QGRLRVGAAVGVGADNEER 232
Query: 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVD 312
E LV+AGV+V+V+D++ G+S ++ ++ K YP++ +I GNV T A+ LIEAG D
Sbjct: 233 AEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGAD 292
Query: 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL 372
++VG+G GSICTT+ V VG Q TA+ + A + G+PVIADGGI SG I KAL
Sbjct: 293 AVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAA 352
Query: 373 GASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-I 430
GAS VM+GS LAG+ EAPG GR K YRGMGSL AM+KGS RY A K +
Sbjct: 353 GASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLV 412
Query: 431 AQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQV 490
+G+ G V KG + + I M ++ G GA++++ + ++ +R+ TGA
Sbjct: 413 PEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELRE--KAEFVRI---TGAGLR 467
Query: 491 EGGVH 495
E VH
Sbjct: 468 ESHVH 472
|
Length = 486 |
| >gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 3e-64
Identities = 150/502 (29%), Positives = 252/502 (50%), Gaps = 36/502 (7%)
Query: 23 SYTYDDVIFLPHY--IDFPIDAVSLSTRLTR-------NIDLSLPCVASPMDTVTEDYMA 73
S T+ + + +P + VSL T L + I L++P V++ M +V++D MA
Sbjct: 9 SRTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMA 68
Query: 74 AAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFD--- 130
A+A GG+ + + + +A +V K+ + S D PD + D D
Sbjct: 69 IALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVS--DSNLTPDNTLADVLDLKEKT 126
Query: 131 GSNYVFVTESGTRRSRILGYVTKSD-WENLSDNKVKIFDYMRDCSSNVSVPANYDLGQID 189
G + V VTE GT ++LG VT D + K+ D+M V+ L + +
Sbjct: 127 GHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDFMTPFEKLVTANEGTTLKEAN 186
Query: 190 EVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRES 248
+++ + ++ + +++K+G + +V R+D + K P + +++VGA I TR+
Sbjct: 187 DIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPL---ELLDSSKRYVVGAGINTRDY 243
Query: 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLI 307
ER+ LV+AG +V+ +DSS+G S +Q + + ++ Y + +G GNVV + L
Sbjct: 244 -AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA 302
Query: 308 EAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIA----AQSGV--PVIADGGIS 361
EAG D ++VG+G GSIC T+E +GRGQATA+ +V+ ++GV P+ +DGGI
Sbjct: 303 EAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIV 362
Query: 362 NSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRY 421
H+ AL +GA +M+G + A E+P V NG +K+Y G GS A QRY
Sbjct: 363 YDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNW---QRY 419
Query: 422 -LGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480
LG KL +GV V GS+ + T+ V+ + GA S+ + +
Sbjct: 420 DLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQ-----QKAK 474
Query: 481 LEVRTGAAQVEGGVHGLVSYEK 502
+ + + + VEGG H ++ +K
Sbjct: 475 ITLVSSTSIVEGGAHDVILKDK 496
|
Length = 502 |
| >gnl|CDD|180725 PRK06843, PRK06843, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 182 bits (462), Expect = 3e-52
Identities = 100/256 (39%), Positives = 150/256 (58%), Gaps = 6/256 (2%)
Query: 215 EDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSS 274
++ E + +PN K + K VGAA+ ER+E LVKA V+++V+DS+ G+S+
Sbjct: 123 KNAEHKEDFPNACKDL---NNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHST 179
Query: 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR 334
IE++K K YP LD+I GN+VT A +LI G D L+VG+G GSICTT+ V VG
Sbjct: 180 RIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGV 239
Query: 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYV 394
Q TA+ V + + + +IADGGI SG +VKA+ GA +VM+G+ AG+ E+P +
Sbjct: 240 PQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEI 299
Query: 395 YQNGRRVKKYRGMGSLEAMTKGSDQRYL---GDKAKLKIAQGVVGAVADKGSVLKFIPYT 451
NG++ K Y GMGS+ AM +GS RY ++ K + +G+ G V G + +
Sbjct: 300 IYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQL 359
Query: 452 MQAVKQGFQDLGASSL 467
+ G LGA+++
Sbjct: 360 KGGLMSGMGYLGAATI 375
|
Length = 404 |
| >gnl|CDD|130370 TIGR01303, IMP_DH_rel_1, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 7e-43
Identities = 128/462 (27%), Positives = 217/462 (46%), Gaps = 25/462 (5%)
Query: 21 GYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALG 80
GY TY+DV +P + + ++P V + M V MA +A G
Sbjct: 9 GYDLTYNDVFMVPSRSEVG-SRFDVDLSTADGTGTTIPLVVANMTAVAGRRMAETVARRG 67
Query: 81 GIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDF---DGSNYVFV 137
GI I+ + + V KSR + + + + + AP ++DA V
Sbjct: 68 GIVILPQDLPIPAVKQTVAFVKSRDL-VLDTPITL--APHDTVSDAMALIHKRAHGAAVV 124
Query: 138 TESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDV 197
R +G VT SD + D ++ D M + V+ PA+ + + ++LE
Sbjct: 125 ILED----RPVGLVTDSDLLGV-DRFTQVRDIM--STDLVTAPADTEPRKAFDLLEHAPR 177
Query: 198 DF-VVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256
D +++ DG ++TR R Y G+ +GAA+G + + L
Sbjct: 178 DVAPLVDADGTLAGILTRTGALRATIY----TPATDAAGRLRIGAAVGINGDVGGKAKAL 233
Query: 257 VKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316
+ AGV+V+V+D++ G+ I IK + + ++ GNVV+ ++L+EAG + ++V
Sbjct: 234 LDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV 293
Query: 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAST 376
G+G G++CTT+ + VGR Q +AV + ++ A + G V ADGG+ + + AL GAS
Sbjct: 294 GVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASN 353
Query: 377 VMMGSFLAGSTEAPGAYVYQ-NGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLK-----I 430
VM+GS+ AG+ E+PG + +GR K+ GM S A+ + D+A+ I
Sbjct: 354 VMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKALFEEGI 413
Query: 431 AQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472
+ +G D+G V I + + V+ GASSL+ H+
Sbjct: 414 STSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHE 455
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302 [Unknown function, General]. Length = 475 |
| >gnl|CDD|181127 PRK07807, PRK07807, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 156 bits (398), Expect = 2e-42
Identities = 125/405 (30%), Positives = 204/405 (50%), Gaps = 37/405 (9%)
Query: 22 YSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLS--------LPCVASPMDTVTEDYMA 73
Y TYDDV +P D + +R ++DLS +P V + M V MA
Sbjct: 11 YDLTYDDVFLVPSRSD-------VGSRF--DVDLSTADGTGTTIPLVVANMTAVAGRRMA 61
Query: 74 AAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDF---- 129
+A GG+ ++ + A +V KSR +F + + + +PD + DA
Sbjct: 62 ETVARRGGLVVLPQDIPIDVVAEVVAWVKSRD-LVFDTPVTL--SPDDTVGDALALLPKR 118
Query: 130 DGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQID 189
V V E G R +G VT++D + D ++ D M + V++PA D +
Sbjct: 119 AHGAVVVVDEEG----RPVGVVTEADCAGV-DRFTQVRDVMS--TDLVTLPAGTDPREAF 171
Query: 190 EVLEKNDVDF-VVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRES 248
++LE V V++ DG + V+TR R Y V G+ V AA+G
Sbjct: 172 DLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY----TPAVDAAGRLRVAAAVGINGD 227
Query: 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIE 308
+ L++AGV+V+V+D++ G+ +E ++ + P + ++ GNVVT ++L+E
Sbjct: 228 VAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE 287
Query: 309 AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368
AG D ++VG+G G++CTT+ + VGR Q +AV + ++ A + G V ADGG+ + +
Sbjct: 288 AGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVAL 347
Query: 369 ALVLGASTVMMGSFLAGSTEAPGAYVY-QNGRRVKKYRGMGSLEA 412
AL GAS VM+GS+ AG+ E+PG + ++GR K+ GM S A
Sbjct: 348 ALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARA 392
|
Length = 479 |
| >gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 7/238 (2%)
Query: 233 PDGKWMVGAAIGTRESDKERLEHLVKA--GVNVVVLDSSQGNSSFQIEMIKYAKKTYPEL 290
PD V + G+ ++D E++ +++A + + LD + G S +E +K ++ +PE
Sbjct: 92 PDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEH 151
Query: 291 DVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS 350
++ GNVVT + LI +G D ++VG+G GS+CTT+ VG Q +AV + + A
Sbjct: 152 TIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGL 211
Query: 351 GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSL 410
+I+DGG + G + KA GA VM+G AG TE+ G + +NGR+ K + GM S
Sbjct: 212 KGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSD 271
Query: 411 EAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQ 468
AM +++ G A+ + ++G V +G V I + ++ +GA+ L+
Sbjct: 272 TAM-----KKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLK 324
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 343 |
| >gnl|CDD|235343 PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 65/204 (31%), Positives = 111/204 (54%), Gaps = 7/204 (3%)
Query: 243 IGTRESDKERLEHLVKAG--VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTM 300
GT ++D E+ + ++ +N + +D + G S ++ + A++ +P+ + GNVVT
Sbjct: 103 TGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTG 162
Query: 301 YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI 360
+ LI +G D ++VG+G GS+CTT+ VG Q +AV + + A G +++DGG
Sbjct: 163 EMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVSDGGC 222
Query: 361 SNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQR 420
+ G + KA GA VM+G LAG E+ G V +NG + + GM S AM +R
Sbjct: 223 TVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAM-----KR 277
Query: 421 YLGDKAKLKIAQGVVGAVADKGSV 444
++G A+ + A+G + +G V
Sbjct: 278 HVGGVAEYRAAEGKTVKLPLRGPV 301
|
Length = 346 |
| >gnl|CDD|235479 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 61/171 (35%), Positives = 92/171 (53%), Gaps = 7/171 (4%)
Query: 243 IGTRESDKERLEHLVKAGV--NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTM 300
+G ++ + + ++ L G+ + +D + G+S I MI++ KK PE VI GNV T
Sbjct: 92 VGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTP 151
Query: 301 YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVSSIAAQSGVPVIADG 358
+ L AG D +VG+G G +C T+ G G Q A+ + A + P+IADG
Sbjct: 152 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARK---PIIADG 208
Query: 359 GISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGS 409
GI G I K++ GA+ VM+GS AG E+PG V +G+ K+Y G S
Sbjct: 209 GIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSAS 259
|
Length = 326 |
| >gnl|CDD|238223 cd00381, IMPDH, IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGI 82
T+DDV+ +P Y V LST+LT+NI L++P V++PMDTVTE MA AMA LGGI
Sbjct: 1 GLTFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGI 60
Query: 83 GIVHSNCTAADQARLVVSAKSRRV 106
G++H N + +QA V K R +
Sbjct: 61 GVIHRNMSIEEQAEEVRKVKGRLL 84
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. Length = 325 |
| >gnl|CDD|130373 TIGR01306, GMP_reduct_2, guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 9/188 (4%)
Query: 242 AIGTRESDKERLEHLVKAGV--NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVT 299
++G + + E + L + + + +D + G+S+ I MIK+ K P+ VI GNV T
Sbjct: 88 SVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGT 147
Query: 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVSSIAAQSGVPVIAD 357
+ L AG D +VG+G G +C T+ G G Q A+ + A + P+IAD
Sbjct: 148 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARK---PIIAD 204
Query: 358 GGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417
GGI G I K++ GAS VM+GS AG E+PG V ++G+ K+Y GS KG
Sbjct: 205 GGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEY--FGSASEFQKGE 262
Query: 418 DQRYLGDK 425
+ G K
Sbjct: 263 HKNVEGKK 270
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 321 |
| >gnl|CDD|236322 PRK08649, PRK08649, inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-24
Identities = 52/114 (45%), Positives = 67/114 (58%), Gaps = 13/114 (11%)
Query: 289 ELD--VIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSI 346
ELD VI G VT A +L+ G G+ VG+G G+ CT++ V +G ATA+ V+
Sbjct: 185 ELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVA-- 242
Query: 347 AA------QSG---VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPG 391
AA ++G V VIADGGI SG I KA+ GA VM+GS LA + EAPG
Sbjct: 243 AARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296
|
Length = 368 |
| >gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-21
Identities = 71/222 (31%), Positives = 98/222 (44%), Gaps = 53/222 (23%)
Query: 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG 335
+ + KK P + +V+ + A ++ AGVD ++ G+G G V
Sbjct: 1 VLMQVLKIKKARP--GLTFDDVLLLPAASDVAPAGVD-VKTGLGPGI--------GVNIP 49
Query: 336 QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVY 395
Q +A + A+ + + DGGI VM G+ LA E+PG Y
Sbjct: 50 QVSAAMDTVT-EARMAIAMARDGGIG---------------VMHGNMLA--EESPGEY-- 89
Query: 396 QNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAV 455
K RGMGS++AM QRY +AQGV G V DKGS+ KFIPY +
Sbjct: 90 ---LYQK--RGMGSIDAM-----QRYFSSVL---VAQGVSGVV-DKGSIKKFIPYLYGGL 135
Query: 456 KQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGL 497
+ Q +G SL LL+ R E RT + EGGVH L
Sbjct: 136 QSSCQYIGCRSL----TLLKENV-RFEFRTAS---EGGVHNL 169
|
Length = 170 |
| >gnl|CDD|233351 TIGR01304, IMP_DH_rel_2, IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-15
Identities = 57/150 (38%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 256 LVKAGVNVVVLDS---SQGNSSFQIEMIKYAKKTYPELD--VIGGNVVTMYQAQNLIEAG 310
+VKAG +++V+ S + S E + K+ ELD VI G V A +L+ G
Sbjct: 151 VVKAGADLLVIQGTLVSAEHVSTSGEPLNL-KEFIGELDVPVIAGGVNDYTTALHLMRTG 209
Query: 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA------QSG---VPVIADGGIS 361
G V +G G TT+ V + ATA+ V+ AA ++G V VIADGGI
Sbjct: 210 AAG--VIVGPGGANTTRLVLGIEVPMATAIADVA--AARRDYLDETGGRYVHVIADGGIE 265
Query: 362 NSGHIVKALVLGASTVMMGSFLAGSTEAPG 391
SG +VKA+ GA V++GS LA + EAPG
Sbjct: 266 TSGDLVKAIACGADAVVLGSPLARAAEAPG 295
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302 [Unknown function, General]. Length = 369 |
| >gnl|CDD|223590 COG0516, GuaB, IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-15
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 22 YSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGG 81
T+DDV+ LP D V + T L I +++P V++ MDTVTE MA AMA GG
Sbjct: 13 PGLTFDDVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVTEARMAIAMARDGG 72
Query: 82 IGIVHSNCTAADQARLVV 99
IG++H N A + +
Sbjct: 73 IGVMHGNMLAEESPGEYL 90
|
Length = 170 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 4e-10
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 29/156 (18%)
Query: 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV-IGGNVVTMYQAQNLI 307
+ LE ++ GV VV S G + +E +K + + V ++ +A+
Sbjct: 69 FEALLEVALEEGVPVVSF--SFGPPAEVVERLK-------AAGIKVIPTVTSVEEARKAE 119
Query: 308 EAGVDGLRV------GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS 361
AG D L G T + V + +PVIA GGI+
Sbjct: 120 AAGADALVAQGAEAGGHRGTFDIGTFAL-------------VPEVRDAVDIPVIAAGGIA 166
Query: 362 NSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397
+ I AL LGA V MG+ + E+ + Y+
Sbjct: 167 DGRGIAAALALGADGVQMGTRFLATEESGASPAYKQ 202
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 7e-10
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 114 DVFKAPDGCINDANDF---DGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYM 170
+PD + D + G + + VTE G ++LG VT D + L+D++ + + M
Sbjct: 4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVM 63
Query: 171 RDCSSNVSVPANYDLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERL 220
V P L + +E+L ++ + ++ DGE + +VTR D+++
Sbjct: 64 TPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKKN 114
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114 |
| >gnl|CDD|224981 COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 256 LVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGL- 314
+ AGV VV + F + +K A + +V+T+ +A AG D +
Sbjct: 100 IEGAGVPVVSTSFGAPPAEF-VARLKAAGI------KVIHSVITVREALKAERAGADAVI 152
Query: 315 RVGMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQ-----SGVPVIADGGISNSGHIVK 368
G +G G RG ++ + G+PVIA GGI++ I
Sbjct: 153 AQGAEAG-----------GHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAA 201
Query: 369 ALVLGASTVMMGSFLAGSTEAPGAYVYQN 397
AL LGA V MG+ + EA + Y+
Sbjct: 202 ALALGADGVQMGTRFLATKEADASDAYKQ 230
|
Length = 336 |
| >gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 258 KAGVNV-VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316
V V L S Q ++SF + +++ + +P ++ G +VT A+ IE G DG+ +
Sbjct: 205 AIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCIELGADGVIL 263
Query: 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAST 376
G Q A+ +A ++ I A + PV+ D GI IVKAL LGA+
Sbjct: 264 SNHGGR----QLDDAIAPIEA-----LAEIVAATYKPVLIDSGIRRGSDIVKALALGANA 314
Query: 377 VMMG 380
V++G
Sbjct: 315 VLLG 318
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361 |
| >gnl|CDD|217344 pfam03060, NMO, Nitronate monooxygenase | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 297 VVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355
V + +A+ AG D + G +G T VG V V +PVI
Sbjct: 144 VSSAKEARKAEAAGADAVVAQGPEAGGHIGTF----VGVTTFLLVPTVVDAVD---IPVI 196
Query: 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAP 390
A GGI++ I AL LGA V +G+ + EA
Sbjct: 197 AAGGIADGRGIAAALALGAEGVQIGTRFLATKEAD 231
|
Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite. Length = 329 |
| >gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 29/89 (32%)
Query: 303 AQNLIEAGVDGLRV---GMGSGSICTTQEVCAVGRGQATAVYKVSSI--------AAQSG 351
A+ +EAGVDG+ V G GR A ++I A
Sbjct: 184 AKRAVEAGVDGIVVSNHG---------------GRQLDGA---PATIDALPEIVAAVGGR 225
Query: 352 VPVIADGGISNSGHIVKALVLGASTVMMG 380
+PV+ DGGI ++KAL LGA V++G
Sbjct: 226 IPVLVDGGIRRGTDVLKALALGADAVLLG 254
|
Length = 302 |
| >gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 9e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
A + V+ DGGI ++KAL LGA V++G
Sbjct: 223 AVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299 |
| >gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 303 AQNLIEAGVDGLRVGMGSG--------SICTTQEVCAVGR-----GQATAVYKVSSIAAQ 349
A+ L +AGV + V G+G + + G TA + +A
Sbjct: 195 AKRLADAGVKAIDVA-GAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSAL 253
Query: 350 SGVPVIADGGISNSGHIVKALVLGASTV-MMGSFLAGSTEAPGA 392
+P+IA GGI N I KAL LGA V M G FL + E A
Sbjct: 254 PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEA 297
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. Length = 326 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 258 KAGVNVVVLDSSQG-NSSFQIEMIKYAKKTYPELDVIGGNVVT-MYQAQNLIEAGVDGLR 315
AG + V + + G + +E+I+ ++ P++ V+ T A EAGVD +
Sbjct: 82 AAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVG 141
Query: 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375
+G G G V A + S VPVIA GGI++ +AL LGA
Sbjct: 142 LGNGGGGGGGRDAV-------PIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGAD 194
Query: 376 TVMMGS 381
V++GS
Sbjct: 195 GVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 352 VPVIADGGISNSGHIVKALVLGASTVMMG-SFLAGSTEAPGAYVYQ 396
+ VIADGGI + + KAL LGA V +G FL G A V +
Sbjct: 274 IEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVER 319
|
Length = 360 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 26/111 (23%)
Query: 287 YPELDVIGGNVVTMYQ----------------AQNLIEAGVDGLRVGMGSGSICTTQEVC 330
P +D+ G VV +Y+ A+ E G D L +
Sbjct: 3 IPAIDLKDGRVVRLYKGDYFKNLVYAGDPVELAKRYEEEGADELHFVDLDAAKE------ 56
Query: 331 AVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381
GR + + IA + +PV GGI + + L GA V++G+
Sbjct: 57 --GRPVNLDL--IEEIAEEVFIPVQVGGGIRSLEDAERLLSAGADKVIIGT 103
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 3e-04
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV-MMGSFLA----GSTEA 389
G TA + + + +P+IA GGI N I KAL LGA V M G FL G EA
Sbjct: 245 GIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEA 304
|
Length = 352 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.004
Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 22/156 (14%)
Query: 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSS-QGNSSFQIEMIKY-----------AKK 285
VG I E E L+ AG + V++ ++ N E + AK+
Sbjct: 77 QVGGGI----RSLEDAERLLSAGADKVIIGTAAVKNPELIKEAAEKFGSQCIVVAIDAKR 132
Query: 286 TYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSS 345
++ + G T A + + +G+G I T ++ G +
Sbjct: 133 EDGKVAINGWREETGIDAVEWAKKLEE-----LGAGEILLT-DIDRDGTLSGPDLELTRE 186
Query: 346 IAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381
+A +PVIA GG+ + + + G V+ GS
Sbjct: 187 LAEAVNIPVIASGGVGSLEDLKELFSEGVDGVIAGS 222
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 100.0 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 100.0 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 100.0 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 100.0 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 100.0 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 100.0 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 100.0 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 100.0 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 100.0 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 100.0 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 100.0 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 100.0 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 100.0 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 100.0 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.92 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.9 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 99.9 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 99.89 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 99.89 | |
| PLN02979 | 366 | glycolate oxidase | 99.89 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.88 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 99.88 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.88 | |
| PLN02535 | 364 | glycolate oxidase | 99.87 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.87 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 99.86 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 99.86 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 99.86 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.85 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 99.83 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.83 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.82 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.78 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 99.77 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.75 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.75 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.73 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 99.62 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.55 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.48 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.43 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.43 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.41 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.39 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.37 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.36 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 99.35 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.34 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.33 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.33 | |
| COG0516 | 170 | GuaB IMP dehydrogenase/GMP reductase [Nucleotide t | 99.32 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.32 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 99.31 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.31 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.3 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.29 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.29 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 99.29 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 99.29 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.28 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.28 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.28 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.27 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.27 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.26 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.26 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.26 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.26 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.25 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.25 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.24 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 99.24 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.24 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.24 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.24 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 99.23 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.23 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 99.23 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.23 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.23 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 99.23 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.23 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.23 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.23 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 99.23 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.22 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.22 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.22 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.22 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 99.22 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.21 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.21 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.2 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.2 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.2 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.2 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.18 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.18 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.18 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.18 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.18 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 99.18 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.17 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.17 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.16 | |
| COG0516 | 170 | GuaB IMP dehydrogenase/GMP reductase [Nucleotide t | 99.16 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.16 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.16 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.16 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 99.15 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.15 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.15 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 99.14 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.14 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 99.14 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 99.13 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.13 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 99.12 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.12 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 99.1 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 99.1 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.09 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.09 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 99.08 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 99.07 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.07 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 99.05 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 99.04 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.04 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.03 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.02 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 99.01 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 99.0 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.0 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.99 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 98.96 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.93 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.92 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.92 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.92 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.91 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 98.9 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.9 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.89 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.89 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.89 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.88 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 98.88 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 98.88 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.86 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.84 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 98.81 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.8 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 98.79 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.78 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 98.78 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.78 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 98.78 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 98.76 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.76 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 98.75 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.74 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 98.7 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.7 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.69 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 98.69 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.68 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 98.68 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 98.68 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.65 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 98.63 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.6 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.59 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.58 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.56 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.56 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.54 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.51 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.49 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 98.47 | |
| KOG0475 | 696 | consensus Cl- channel CLC-3 and related proteins ( | 98.47 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 98.46 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.46 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.38 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.36 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.36 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 98.36 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.35 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.34 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.34 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 98.34 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.32 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 98.31 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.31 | |
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 98.3 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.3 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 98.28 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 98.28 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.27 | |
| KOG0474 | 762 | consensus Cl- channel CLC-7 and related proteins ( | 98.26 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.24 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.24 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 98.22 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 98.2 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 98.19 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.19 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.18 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 98.15 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 98.13 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 98.13 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.12 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 98.11 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.1 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 98.09 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.08 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 98.05 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.05 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.04 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.03 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 98.03 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.03 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.02 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.0 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.0 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 97.99 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.99 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.99 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.97 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.94 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 97.93 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 97.93 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.92 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 97.91 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.9 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.9 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.9 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.89 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 97.89 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 97.87 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.87 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 97.86 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.82 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 97.8 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.79 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 97.77 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.75 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 97.75 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 97.74 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 97.74 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.72 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 97.72 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.7 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 97.7 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.67 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 97.67 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 97.65 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.64 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.64 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.62 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.61 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 97.61 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 97.6 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 97.59 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 97.58 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 97.57 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 97.57 | |
| PLN02591 | 250 | tryptophan synthase | 97.56 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 97.55 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.53 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.53 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 97.52 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.52 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 97.51 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 97.5 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.48 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.47 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 97.47 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 97.47 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 97.44 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.42 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 97.42 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 97.41 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.39 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.39 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.39 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.38 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 97.38 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.34 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 97.32 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.31 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 97.28 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 97.27 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.27 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.25 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 97.24 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 97.22 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 97.21 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 97.21 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.2 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 97.18 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 97.18 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.15 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 97.14 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 97.14 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.11 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.09 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.08 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.08 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.07 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 97.07 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 97.06 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 97.06 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 97.05 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 97.04 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.04 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 97.04 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 97.0 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 97.0 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 97.0 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 97.0 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 96.99 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.98 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 96.96 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 96.93 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 96.92 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 96.91 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 96.91 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 96.9 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 96.89 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 96.89 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 96.83 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 96.83 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 96.83 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 96.82 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 96.79 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 96.79 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 96.78 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 96.78 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 96.77 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.75 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 96.75 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 96.75 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 96.74 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 96.73 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 96.73 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 96.73 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 96.72 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 96.72 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 96.71 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 96.7 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 96.7 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 96.68 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 96.68 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 96.66 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 96.66 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 96.65 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.64 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 96.63 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 96.63 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 96.63 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 96.63 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 96.63 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 96.62 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 96.62 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 96.61 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 96.6 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 96.58 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 96.58 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 96.56 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 96.56 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 96.54 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.54 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 96.53 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 96.52 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 96.5 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 96.5 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 96.49 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 96.48 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 96.48 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 96.46 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 96.45 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 96.44 | |
| PRK08005 | 210 | epimerase; Validated | 96.44 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 96.43 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 96.43 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 96.43 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 96.42 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 96.41 | |
| PRK14057 | 254 | epimerase; Provisional | 96.41 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 96.39 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 96.38 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 96.38 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 96.38 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 96.34 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 96.33 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 96.33 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 96.33 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 96.29 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 96.29 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 96.29 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 96.25 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 96.24 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.23 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 96.23 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 96.22 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 96.22 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.22 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 96.21 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 96.2 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 96.2 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 96.19 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 96.16 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 96.16 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 96.16 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 96.14 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 96.13 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 96.12 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 96.09 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 96.08 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 96.07 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 96.06 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 96.06 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 96.04 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 96.04 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.04 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.03 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 96.02 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.99 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 95.98 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 95.93 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 95.91 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 95.87 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 95.87 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 95.87 | |
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 95.86 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 95.79 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.76 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 95.75 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 95.7 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 95.67 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 95.67 | |
| PRK06852 | 304 | aldolase; Validated | 95.66 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 95.65 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 95.65 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 95.64 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 95.61 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.6 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 95.59 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 95.59 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 95.56 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 95.53 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 95.51 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 95.47 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 95.47 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 95.44 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 95.44 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 95.42 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 95.4 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 95.39 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 95.39 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 95.39 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.33 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.3 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 95.29 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 95.28 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.27 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 95.23 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 95.22 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 95.17 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 95.12 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 95.0 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 95.0 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 94.89 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 94.89 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 94.86 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 94.86 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 94.71 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 94.7 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 94.57 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 94.52 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 94.48 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 94.37 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 94.33 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 94.31 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 94.27 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 94.26 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 94.19 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 94.15 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 94.08 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 94.07 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 94.02 | |
| PLN02591 | 250 | tryptophan synthase | 93.87 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 93.87 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 93.84 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 93.83 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 93.82 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 93.77 |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-96 Score=777.31 Aligned_cols=497 Identities=75% Similarity=1.106 Sum_probs=472.3
Q ss_pred CCCCCccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc
Q 010640 7 PIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH 86 (505)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~ 86 (505)
++.||++++++|+...+||||||+|+|+|+++.|+++++.+++|+++.+++|+++++|+++++.+|+++|++.||+|+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt~~~lA~Ama~aGGiGfI~ 84 (505)
T PLN02274 5 AFEDGFSAEKLFNQGVSYTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVTESDMAIAMAALGGIGIVH 84 (505)
T ss_pred cccCCcCHHHHhcCCCCCCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccchHHHHHHHHhCCCeEEEc
Confidence 67899999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccc
Q 010640 87 SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNK 163 (505)
Q Consensus 87 ~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~ 163 (505)
.+++++++..+++++++.+..|+.+| +++++++|+.+++++|.+ ++ +||+|+++.+++++|+||.+|+++....+
T Consensus 85 ~~as~E~q~~~Irkvk~~~~gmi~dp--vtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~ 162 (505)
T PLN02274 85 YNNTAEEQAAIVRKAKSRRVGFVSDP--VVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRE 162 (505)
T ss_pred CCCCHHHHHHHHHHhhcccccccCCC--eeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccC
Confidence 99999999999999998888899999 999999999999999988 76 99998622237999999999998655567
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEe
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~ 242 (505)
.++.++|++..+++++++++++.+++++|.++++..+||+|+ ++++|+||++||++...++.+.++++|..++++++++
T Consensus 163 ~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaa 242 (505)
T PLN02274 163 TKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAA 242 (505)
T ss_pred CcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEE
Confidence 789999997334899999999999999999999999999998 9999999999999999999886667789999999999
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcc
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGS 322 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~ 322 (505)
++...+..++++.|+++|+|+|++|.++|++..+++.++++|+.+|+++||+|+|.|.++|+.++++|+|+|.+++|+|+
T Consensus 243 vg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~ 322 (505)
T PLN02274 243 IGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGS 322 (505)
T ss_pred EcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCc
Confidence 99888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEee
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVK 402 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k 402 (505)
+|+++...+.|.|+++++..+.++++..++|||++|||+++.|++|||++||++||+|++|+.|.|||++..+++|++||
T Consensus 323 ~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k 402 (505)
T PLN02274 323 ICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVK 402 (505)
T ss_pred cccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEE
Confidence 99999888889999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred eecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEE
Q 010640 403 KYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLE 482 (505)
Q Consensus 403 ~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~ 482 (505)
.||||||++||.+++.+|||++..+..++||+++++||+|++.++|.+|.++||++|+|+|++||+|||+++|+|.++|+
T Consensus 403 ~yrgmgs~~a~~~~~~~ry~~~~~~~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~~~~~~~~f~ 482 (505)
T PLN02274 403 KYRGMGSLEAMTKGSDQRYLGDTAKLKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHELLRSGTLRLE 482 (505)
T ss_pred EEeccchHHHHhccccccccccCcccccCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhhcccCceEEE
Confidence 99999999999989999999876667899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCccCcceeccccCC
Q 010640 483 VRTGAAQVEGGVHGLVSYEKKSF 505 (505)
Q Consensus 483 ~~~~~~~~e~~~~~~~~~~~~~~ 505 (505)
++|++|++||||||+++|+||+|
T Consensus 483 ~~t~~~~~e~~~h~~~~~~~~~~ 505 (505)
T PLN02274 483 VRTGAAQVEGGVHGLVSYEKKAF 505 (505)
T ss_pred EEchhhHhccCCCcceeccccCC
Confidence 99999999999999999999987
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-94 Score=762.36 Aligned_cols=488 Identities=50% Similarity=0.788 Sum_probs=466.2
Q ss_pred CCCccHHHhhccCC-CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcC
Q 010640 9 EDGFSADRLFSQGY-SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHS 87 (505)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~ 87 (505)
.|||+++.+|+... +||||||+|+|+|+++.|+++++.+++|+++.+++|+|+++|+++|+.+||++|++.||+|+||+
T Consensus 2 ~~~~~~~~~~~~~~~~lt~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt~~~ma~a~a~~GglGvi~~ 81 (495)
T PTZ00314 2 ADGMSADELFNSIPTGLTYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVTEHKMAIAMALMGGIGVIHN 81 (495)
T ss_pred CCccCHHHHhcCCCcCCCccceEecccccccccccccccccccCCcccCCceeecCccccccHHHHHHHHHCCCeEEecC
Confidence 58999999999995 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccccccc
Q 010640 88 NCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKV 164 (505)
Q Consensus 88 ~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~ 164 (505)
+++++++.++++++++++++|+.+| +++++++|+.+++++|.+ ++ +||+|++..+++++|+||.+|+++....+.
T Consensus 82 ~~~~e~~~~~v~kvk~~e~g~i~dp--vtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~ 159 (495)
T PTZ00314 82 NCSIEEQVEEVRKVKRFENGFIMDP--YVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKST 159 (495)
T ss_pred CCCHHHHHHHHhhccccccccccCC--eecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCC
Confidence 9999999999999999999999999 999999999999999988 76 999986222389999999999987666677
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEee
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i 243 (505)
++.++|++.++++++++++++.+++++|.+++++.+||+|+ ++++|+||++||++...++++ .+|..+++++++.+
T Consensus 160 ~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a---~~D~~GrL~Vgaav 236 (495)
T PTZ00314 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNA---SLDSNGQLLVGAAI 236 (495)
T ss_pred CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchh---hhccCCCEEEEEEE
Confidence 89999987668999999999999999999999999999999 999999999999999999888 88999999999999
Q ss_pred cCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 244 ~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
+...+..++++.++++|+++++++.++|++...++.++++++.+|+++|++|+|.|.++++.++++|+|+|++++|+|++
T Consensus 237 g~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~ 316 (495)
T PTZ00314 237 STRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSI 316 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcc
Confidence 88777899999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeee
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKK 403 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~ 403 (505)
|+++...+||.|+++++.++++++++.++|||++|||+++.|++||+++||++||+|++|+.|.|||++..+++|++||.
T Consensus 317 ~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~ 396 (495)
T PTZ00314 317 CITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKV 396 (495)
T ss_pred cccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEE
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ecccCcHHHHh-ccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEE
Q 010640 404 YRGMGSLEAMT-KGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLE 482 (505)
Q Consensus 404 ~~g~~s~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~ 482 (505)
||||||++||. .++.+|||++.....++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||+.+++|.++|+
T Consensus 397 yrGm~s~~a~~~~~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~~~~~~~~~f~ 476 (495)
T PTZ00314 397 YRGMGSLEAMLSKESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHEKLYSGQVRFE 476 (495)
T ss_pred EeccchHHHhhcccccccccccccccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHhhcccCceEEE
Confidence 99999999998 68889999876677899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCccCcceecc
Q 010640 483 VRTGAAQVEGGVHGLVSYE 501 (505)
Q Consensus 483 ~~~~~~~~e~~~~~~~~~~ 501 (505)
++|++|+.||||||+++|+
T Consensus 477 ~~t~~~~~e~~~h~~~~~~ 495 (495)
T PTZ00314 477 RRSGSAIKEGGVHSLHKFE 495 (495)
T ss_pred EEChhHHhccCCCccccCC
Confidence 9999999999999999985
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-95 Score=709.04 Aligned_cols=492 Identities=51% Similarity=0.799 Sum_probs=480.0
Q ss_pred CCCCCCCCCCccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCC
Q 010640 2 DFSPLPIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGG 81 (505)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg 81 (505)
++.-|+++||++++++|+++..|||+|++++||+.++.+++|++.++||+++.+++|+++||||++++.+||++|+..||
T Consensus 8 ~~~~~~~~dGls~~~L~~~~~~LtynDfliLPg~idF~s~eVsL~t~ltr~itl~tPlvsSpMDTVtes~MAiaMAl~gg 87 (503)
T KOG2550|consen 8 DLTKSLPRDGLSVQELFDSKIGLTYNDFLILPGFIDFASDEVSLQTKLTRNITLNTPLVSSPMDTVTESEMAIAMALLGG 87 (503)
T ss_pred cccccCCcCCCCHHHHhhcccCccccceeecccccccccccceeehhhhhcccccCceeccCCcccchhHHHHHHHhcCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcCCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc
Q 010640 82 IGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN 158 (505)
Q Consensus 82 ~g~i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~ 158 (505)
+|+||.+++|+.|+.+++++++++..+..+| ++++|+.|+.++++.... ++ +|++++++...||+|+||.+|+.|
T Consensus 88 Ig~IHhNctpe~QA~~v~~vK~~~~g~~~~p--~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f 165 (503)
T KOG2550|consen 88 IGFIHHNCTPEDQADMVRRVKNYENGFINNP--IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQF 165 (503)
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhcccccCC--cccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhh
Confidence 9999999999999999999999999999999 999999999999999888 88 999998888899999999999999
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcc
Q 010640 159 LSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKW 237 (505)
Q Consensus 159 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l 237 (505)
..+....+.++|++ +.++.+.+.++.++.++|++++...|||||+ |.++.+|+++|+.++..||.+ +++..+++
T Consensus 166 ~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yPla---sk~~~kql 240 (503)
T KOG2550|consen 166 LEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYPLA---SKDSTKQL 240 (503)
T ss_pred hhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCCcc---ccCcccce
Confidence 87788999999999 7799999999999999999999999999999 999999999999999999999 78899999
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+++++++.++..++++.+.++|+|++++|+++|++...+++++++|+.+|.+.||+|||.|.+.|+.|+.+|+|++.|+
T Consensus 241 l~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG 320 (503)
T KOG2550|consen 241 LCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG 320 (503)
T ss_pred eeeeccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
.|.|++|++++..+.|.|+.+++..|++++...++|||+||||.+..+++|||.+||++||||+.|+++.|||+++.+++
T Consensus 321 MGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~ 400 (503)
T KOG2550|consen 321 MGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRD 400 (503)
T ss_pred cccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcC
Q 010640 398 GRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSR 477 (505)
Q Consensus 398 ~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~ 477 (505)
|+++|+||||||++||+.++..|||++..+.++++|+.+.++++|++..+|.++..++|++|.+.|++++.+||++++++
T Consensus 401 g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~~~~ 480 (503)
T KOG2550|consen 401 GVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMMYSG 480 (503)
T ss_pred CeeehhccCcchHHHHhhhhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecccccccCccCcceec
Q 010640 478 TLRLEVRTGAAQVEGGVHGLVSY 500 (505)
Q Consensus 478 ~~~~~~~~~~~~~e~~~~~~~~~ 500 (505)
.++|+.+|.+++.|+++|.+++|
T Consensus 481 ~vrfe~rt~~Aq~Eggvh~l~Sy 503 (503)
T KOG2550|consen 481 EVRFEKRTMSAQIEGGVHGLHSY 503 (503)
T ss_pred eEEEEeccccceeccCccCCCCC
Confidence 99999999999999999999986
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-88 Score=704.46 Aligned_cols=453 Identities=29% Similarity=0.418 Sum_probs=426.1
Q ss_pred CCcccceeecCCCCCCCCC-CeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDFPID-AVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~-~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+||||||+|+|+|+++.|+ ++++.+++| .++++|+++|+||++|+.+||++|++.||+|+||+|++++.|.+.++++
T Consensus 11 ~ltfddvll~p~~~~~~~~~~v~~~t~~~--~~l~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~qae~v~~V 88 (475)
T TIGR01303 11 DLTYNDVFMVPSRSEVGSRFDVDLSTADG--TGTTIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAVKQTVAFV 88 (475)
T ss_pred CCCccceEEccCccCccCCCceeeccccc--CccccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHhhc
Confidence 8999999999999999995 999999988 4779999999999999999999999999999999999999999999988
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceE
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~ 178 (505)
+.. +.|..+| +++++++++.+++++|.+ ++ +||+| +++++|+||.+|++... ...++.++|++ ++++
T Consensus 89 Kv~-eim~~~p--vtv~p~~tI~eA~~lm~~~~~~~~vVvD----~gklvGIVT~rDL~~~~-~~~~V~dIMt~--~lit 158 (475)
T TIGR01303 89 KSR-DLVLDTP--ITLAPHDTVSDAMALIHKRAHGAAVVIL----EDRPVGLVTDSDLLGVD-RFTQVRDIMST--DLVT 158 (475)
T ss_pred chh-hccccCC--eEECCCCCHHHHHHHHHhcCCeEEEEEE----CCEEEEEEEHHHhhcCC-CCCCHHHHccC--CceE
Confidence 776 5688899 999999999999999988 66 66766 57999999999997543 34679999998 9999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++++++.+++++|.+++++++||+|+ |+++|+||++||++...++ + ..+..+++.+++..+...+..++++.|+
T Consensus 159 v~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~-~---~~d~~grl~Vgaav~~~~~~~~ra~~Lv 234 (475)
T TIGR01303 159 APADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT-P---ATDAAGRLRIGAAVGINGDVGGKAKALL 234 (475)
T ss_pred eCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC-c---hhhhccCceehheeeeCccHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999998887 3 5667779999999988888999999999
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|++++++|.++|++..+++.++++|+.+|++|||+|++.|.+.++.|.++|+|+|.|++|+|++|+++...+||.|++
T Consensus 235 ~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~ 314 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQF 314 (475)
T ss_pred HhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCcccee-ecCeEeeeecccCcHHHHh-c
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVY-QNGRRVKKYRGMGSLEAMT-K 415 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~-~~~~~~k~~~g~~s~~~~~-~ 415 (505)
+++.++++++++.++|||++|||+++.|++|||++||++||+|+.|+.|.|||++..+ .+|++||.||||||++||. .
T Consensus 315 ~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~ 394 (475)
T TIGR01303 315 SAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVAR 394 (475)
T ss_pred HHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhc
Confidence 9999999998888999999999999999999999999999999999999999999998 9999999999999999997 5
Q ss_pred cccccccccccccccccceeeee----ccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccccccc
Q 010640 416 GSDQRYLGDKAKLKIAQGVVGAV----ADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVE 491 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e 491 (505)
++.+|||++..+..++||+++++ ||+|++.++|.+|.++||++|+|+|++||+|||++ ++|+++|++|+.|
T Consensus 395 ~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e 469 (475)
T TIGR01303 395 TGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHER-----AVVGVQSGAGYAE 469 (475)
T ss_pred cccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhC-----CEEEEEccccccc
Confidence 78899998766678999999855 67999999999999999999999999999999999 6999999999999
Q ss_pred CccCc
Q 010640 492 GGVHG 496 (505)
Q Consensus 492 ~~~~~ 496 (505)
||||.
T Consensus 470 ~~~~~ 474 (475)
T TIGR01303 470 GKPLP 474 (475)
T ss_pred CCCCC
Confidence 99996
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-87 Score=706.83 Aligned_cols=466 Identities=31% Similarity=0.472 Sum_probs=432.7
Q ss_pred CCcccceeecCCCCC--CCCCCeeeeeeecC-------cccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHH
Q 010640 23 SYTYDDVIFLPHYID--FPIDAVSLSTRLTR-------NIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAAD 93 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~--~~~~~~~~~~~lt~-------~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~ 93 (505)
+||||||+|+|+|++ +.|+++++.+++|+ +..+++|+++|+|+++++..||++|++.||+|+||.++++++
T Consensus 9 ~~tfddvll~P~~~~~~~~~~~v~~~t~~~~~~~~~~~~i~l~iP~~SatmdtvtgdalAiala~~gG~g~Ih~n~sie~ 88 (502)
T PRK07107 9 SRTFSEYLLVPGLSSKECVPANVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSDDNMAIALAREGGLSFIFGSQSIES 88 (502)
T ss_pred CccccceEEccCCCCCCcCccceeccccccccccCcccccccCCChHHHHHHHHhhHHHHHHHHHcCCCeEeeCCCCHHH
Confidence 899999999999996 68899999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-ccccccccc
Q 010640 94 QARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-DNKVKIFDY 169 (505)
Q Consensus 94 ~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~~~~~v~~i 169 (505)
+++++++++++...+..+| +++++++|+.+++++|.+ ++ +||+|++..+++++|+||.+|+++.. ..+.++.++
T Consensus 89 qa~lV~kVk~~~~g~i~~~--~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~~V~dI 166 (502)
T PRK07107 89 EAAMVRRVKNYKAGFVVSD--SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDTKVKDF 166 (502)
T ss_pred HHHHHHHHHHHhcCCcCCC--CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCCCHHHH
Confidence 9999999998887776788 899999999999999988 66 99998522248999999999997543 346789999
Q ss_pred cccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCcc
Q 010640 170 MRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRES 248 (505)
Q Consensus 170 m~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~ 248 (505)
|++..+++++++++++.+++++|.++++..|||||+ |+++|+||++|+++...+|.+ .+|..++++|++.++.. +
T Consensus 167 Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a---~~d~~grL~V~~av~~~-~ 242 (502)
T PRK07107 167 MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLE---LLDSSKRYVVGAGINTR-D 242 (502)
T ss_pred hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhh---hhhhccCeeeeeccChh-h
Confidence 996557899999999999999999999999999998 999999999999999988887 78889999999998654 5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..++++.|+++|+|+++++.++|++...++.++++++.+| +++|++|||.|.+.++.|+++|+|+|.|++|+|++|++|
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr 322 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITR 322 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccc
Confidence 7899999999999999999999999999999999999997 489999999999999999999999999999999999999
Q ss_pred cccccCcChHHHHHHHHHHHhhc----C--CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEe
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQS----G--VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRV 401 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~----~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~ 401 (505)
...|.|.|+++++.+|+++++++ + +|||+||||+++.|++|||++|||+||+|++|+.|.|||+++.+++|++|
T Consensus 323 ~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~ 402 (502)
T PRK07107 323 EQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYM 402 (502)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEE
Confidence 99999999999999999987542 4 99999999999999999999999999999999999999999999999999
Q ss_pred eeecccCcHHHHhccccccccc-cccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCcee
Q 010640 402 KKYRGMGSLEAMTKGSDQRYLG-DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLR 480 (505)
Q Consensus 402 k~~~g~~s~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~ 480 (505)
|.||||||+.||. .+|||. +.++..++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ ++
T Consensus 403 k~yrgm~s~~a~~---~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~-----~~ 474 (502)
T PRK07107 403 KEYWGEGSNRARN---WQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK-----AK 474 (502)
T ss_pred EEeecccCHhhhh---ccccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC-----Ce
Confidence 9999999999984 589984 44457899999999999999999999999999999999999999999999 59
Q ss_pred EEEecccccccCccCcceeccc
Q 010640 481 LEVRTGAAQVEGGVHGLVSYEK 502 (505)
Q Consensus 481 ~~~~~~~~~~e~~~~~~~~~~~ 502 (505)
|+++|++|+.||||||++++++
T Consensus 475 f~~~t~~~~~e~~~h~~~~~~~ 496 (502)
T PRK07107 475 ITLVSSTSIVEGGAHDVILKDK 496 (502)
T ss_pred EEEECcchhhccCCCcceeecC
Confidence 9999999999999999999664
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-85 Score=684.99 Aligned_cols=455 Identities=29% Similarity=0.429 Sum_probs=428.3
Q ss_pred CCcccceeecCCCCCCCCC-CeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDFPID-AVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~-~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+||||||+|+|+|+++.|+ ++++.+.+ ++.+++|+++|+||++|+.+|+++|++.||+|++|.+++++.+.+.++.+
T Consensus 12 ~ltfddvll~p~~~~~~~~~~v~~~t~~--~~~l~~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~V 89 (479)
T PRK07807 12 DLTYDDVFLVPSRSDVGSRFDVDLSTAD--GTGTTIPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWV 89 (479)
T ss_pred CcCccceEecccccCccCCCceecccCC--CCccccceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhc
Confidence 8999999999999999995 99999975 67899999999999999999999999999999999999999999999988
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceE
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~ 178 (505)
+. .++|..+| +++++++++.++.++|.+ ++ +||+|+ +++++|+||.+|++... ...++.++|++ ++++
T Consensus 90 Kv-~~iMi~~p--vtv~~d~tv~eA~~~m~~~~~s~l~VVD~---~gklvGIVT~rDL~~~~-~~~~V~diMt~--~~it 160 (479)
T PRK07807 90 KS-RDLVFDTP--VTLSPDDTVGDALALLPKRAHGAVVVVDE---EGRPVGVVTEADCAGVD-RFTQVRDVMST--DLVT 160 (479)
T ss_pred cc-ccccccCC--eEECCCCCHHHHHHHHHhcCCceEEEECC---CCeEEEEEeHHHHhcCc-cCCCHHHhccC--CceE
Confidence 77 46899999 999999999999999988 66 999997 89999999999997543 34679999998 9999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++++++.+++++|.+++++++||+|+ |+++|+||++||++...++ + ..+..+++.+++.++..++..++++.+.
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~-~---~~~~~g~l~V~aav~~~~~~~~~a~~Lv 236 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT-P---AVDAAGRLRVAAAVGINGDVAAKARALL 236 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC-c---hhhhhhccchHhhhccChhHHHHHHHHH
Confidence 999999999999999999999999998 9999999999999998887 3 4566778889988888778899999999
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|++++++|.++|++..+++.++++|+.+|+++||+|+|.|.+.++.|+++|+|+|.|++|+|++|+++..+|.|.|++
T Consensus 237 ~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~ 316 (479)
T PRK07807 237 EAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQF 316 (479)
T ss_pred HhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCcccee-ecCeEeeeecccCcHHHHhc-
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVY-QNGRRVKKYRGMGSLEAMTK- 415 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~-~~~~~~k~~~g~~s~~~~~~- 415 (505)
+++.++++++++.++|||++|||.++.|++|||++||++||+|++|+.|.|||++..+ .||++||.||||||++||..
T Consensus 317 ~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~ 396 (479)
T PRK07807 317 SAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAAR 396 (479)
T ss_pred HHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcc
Confidence 9999999999888999999999999999999999999999999999999999999998 99999999999999999974
Q ss_pred cccccccccccccccccceeeee----ccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccccccc
Q 010640 416 GSDQRYLGDKAKLKIAQGVVGAV----ADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVE 491 (505)
Q Consensus 416 ~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e 491 (505)
++.+|||++..+.+++||+++++ |++|++++++++|.++||++|+|+|++||+|||++ ++|+++|+||++|
T Consensus 397 ~~~~~~~~~~~~~~~~eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~-----~~~~~~t~~g~~e 471 (479)
T PRK07807 397 TAGDSAFDRARKALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHER-----AVVGVQSAAGYAE 471 (479)
T ss_pred cCccchhhhcccCCCCCCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC-----CEEEEECcccccc
Confidence 46689998766788999999986 67999999999999999999999999999999999 6999999999999
Q ss_pred CccCcc
Q 010640 492 GGVHGL 497 (505)
Q Consensus 492 ~~~~~~ 497 (505)
||||.+
T Consensus 472 ~~~h~~ 477 (479)
T PRK07807 472 GRPLPT 477 (479)
T ss_pred CCCCCC
Confidence 999986
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-84 Score=688.30 Aligned_cols=463 Identities=37% Similarity=0.581 Sum_probs=439.0
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+|+++.|+++++.+++|+++.+++|+++|+|+++|+.+|++++++.||+|+||.+++++++.+++++++
T Consensus 8 ~~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk 87 (486)
T PRK05567 8 ALTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVK 87 (486)
T ss_pred CcCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccc-cCCCceE
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMR-DCSSNVS 178 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~-~~~~~~~ 178 (505)
+..++|..++ ++++++.++.+++++|.+ ++ +||+|+ +++++|+||.+|+++......++.++|+ + ++++
T Consensus 88 ~~~dim~~~~--v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---~g~lvGiVt~~DL~~~~~~~~~V~dim~~~--~~v~ 160 (486)
T PRK05567 88 RSESGVVTDP--VTVTPDTTLAEALALMARYGISGVPVVDE---NGKLVGIITNRDVRFETDLSQPVSEVMTKE--RLVT 160 (486)
T ss_pred hhhhcccCCC--eEeCCCCCHHHHHHHHHHhCCCEEEEEcc---CCEEEEEEEHHHhhhcccCCCcHHHHcCCC--CCEE
Confidence 9999999999 999999999999999988 76 999997 8999999999999755455678999998 5 8999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++++++.++++.|.+++++.+||+|+ |+++|+||++||++...++.. .++..+++.+++.++..+...+.++.++
T Consensus 161 v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a---~~d~~g~l~V~aai~~~~~~~e~a~~L~ 237 (486)
T PRK05567 161 VPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNA---CKDEQGRLRVGAAVGVGADNEERAEALV 237 (486)
T ss_pred ECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCc---ccccCCCEEEEeecccCcchHHHHHHHH
Confidence 999999999999999999999999999 999999999999999887665 5677889999999987667889999999
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|+++++++.++|+...+++.++++++.+|++||++|++.|.++++.|.++|+|+|.++.|+|+.|+++.+.+||.|++
T Consensus 238 ~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~ 317 (486)
T PRK05567 238 EAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQI 317 (486)
T ss_pred HhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHH
Confidence 99999999999999999999999999999989999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~ 417 (505)
+++.+++++++..++|||++|||+++.|++|||++||++||+|++|+.+.|||++..+++|++||.||||||++||..++
T Consensus 318 ~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~ 397 (486)
T PRK05567 318 TAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGS 397 (486)
T ss_pred HHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhccc
Confidence 99999999887778999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ccccccc--ccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccC
Q 010640 418 DQRYLGD--KAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495 (505)
Q Consensus 418 ~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 495 (505)
.+|||++ .....++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ ++|+++|++|++|||||
T Consensus 398 ~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~-----~~~~~~t~~~~~e~~~h 472 (486)
T PRK05567 398 SDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK-----AEFVRITGAGLRESHVH 472 (486)
T ss_pred ccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc-----CeEEEEChhhHhhcCCc
Confidence 9999984 3456799999999999999999999999999999999999999999998 69999999999999999
Q ss_pred cceec
Q 010640 496 GLVSY 500 (505)
Q Consensus 496 ~~~~~ 500 (505)
|+...
T Consensus 473 ~~~~~ 477 (486)
T PRK05567 473 DVQIT 477 (486)
T ss_pred cceec
Confidence 99764
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-83 Score=673.39 Aligned_cols=440 Identities=48% Similarity=0.740 Sum_probs=419.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+|+++.|+++++.+++|+++.+++|+++|+|+++|+.+|+++|++.|++|+||+|+++++|.+++++++
T Consensus 1 ~~t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk 80 (450)
T TIGR01302 1 GLTFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVK 80 (450)
T ss_pred CCCccceEecccccccCccccccccccccccCcCCCeeecCCCccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC---CeEEEEEeccccccccccccccccccc-cCCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR---SRILGYVTKSDWENLSDNKVKIFDYMR-DCSS 175 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~---g~lvGivt~~Dl~~~~~~~~~v~~im~-~~~~ 175 (505)
++.+.|..+| +++++++|+.+++++|.+ ++ +||+|+ + ++++|+||.+|+++......++.++|+ + +
T Consensus 81 ~~~~~~~~~~--vtl~~~~tv~eal~~m~~~~~s~lpVvd~---~~~~~~lvGIVt~rDL~~~~~~~~~V~dvm~~~--~ 153 (450)
T TIGR01302 81 RAENGIISDP--VTISPETTVADVLELMERKGISGIPVVED---GDMTGKLVGIITKRDIRFVKDKGKPVSEVMTRE--E 153 (450)
T ss_pred cccCceecCc--eEeCCCCCHHHHHHHHHHcCCCEEEEEeC---CCCCCeEEEEEEHHHHhhhhcCCCCHHHhhCCC--C
Confidence 9999999999 999999999999999998 77 999997 5 799999999999765445678999998 5 8
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHH
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLE 254 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~ 254 (505)
++++++++++.++++.|.+++.+.+||+|+ |+++|+||++||++...++.. .++.+++++++++++..++..++++
T Consensus 154 ~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~---~~d~~g~l~V~aav~~~~~~~~r~~ 230 (450)
T TIGR01302 154 VITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHA---SKDENGRLIVGAAVGTREFDKERAE 230 (450)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcc---eEeCCCCEEEEEEecCchhHHHHHH
Confidence 999999999999999999999999999999 999999999999999888766 6788899999999988778899999
Q ss_pred HHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCc
Q 010640 255 HLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR 334 (505)
Q Consensus 255 ~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~ 334 (505)
.++++|+++|+++.++|++..+++.++++++.||+++|++|++.|.+.++.+.++|+|+|.|++|+|++|+++...+||.
T Consensus 231 ~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGV 310 (450)
T ss_pred HHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHh
Q 010640 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT 414 (505)
Q Consensus 335 p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~ 414 (505)
|+++++.++++++++.++|||++|||+++.|++|||++||++||+|++|+.|+|||+++.+.+|++||.||||||++||.
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~ 390 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMT 390 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHh
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccc--cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHH
Q 010640 415 KGSDQRYLGDK--AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 415 ~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
.++.+|||++. ....++||+++++||+|++.+++.+|.++||++|+|+|++||+|||+
T Consensus 391 ~~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~ 450 (450)
T TIGR01302 391 KGSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELRE 450 (450)
T ss_pred ccccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHhC
Confidence 89999999863 45679999999999999999999999999999999999999999984
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-73 Score=578.61 Aligned_cols=392 Identities=35% Similarity=0.549 Sum_probs=355.7
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.|+++++.|+||+.+.+.+|+|+|+|+++++++|++++++.||+|+||.+++++++.+++++++
T Consensus 9 ~ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l~~eI~~vk 88 (404)
T PRK06843 9 ALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVK 88 (404)
T ss_pred ccCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+.++ . + +|++.+|++ .++.++|+. ++.
T Consensus 89 ~~~~-----~-------------------------------~----~i~~~~d~~------~~~~~~~t~-------~~~ 115 (404)
T PRK06843 89 TYKF-----Q-------------------------------K----TINTNGDTN------EQKPEIFTA-------KQH 115 (404)
T ss_pred hhcC-----C-------------------------------C----ceeeccccc------ccchhheec-------ccc
Confidence 8763 1 1 344555553 335666653 233
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
.++.++ .+|+.+...++++ .+|..+++.++++++..++..++++.++++|+|
T Consensus 116 ~~~~~~-------------------------~~d~~~~~~~~~a---~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvD 167 (404)
T PRK06843 116 LEKSDA-------------------------YKNAEHKEDFPNA---CKDLNNKLRVGAAVSIDIDTIERVEELVKAHVD 167 (404)
T ss_pred chHHHH-------------------------Hhhhhhhhhcchh---hhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCC
Confidence 333333 3566666677776 778899999999998777788999999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+|++|.++|++..+.+.++++++.+|++++++|+|.|.+.++.+.++|+|+|.++.++|++|+++...|+|.|+++++.+
T Consensus 168 vI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~ 247 (404)
T PRK06843 168 ILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICD 247 (404)
T ss_pred EEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
++++++..++|||++|||+++.|++|||++||++||+|++|+.|.|||++.++++|++||.||||||++||..++.+|||
T Consensus 248 v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~ 327 (404)
T PRK06843 248 VYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYF 327 (404)
T ss_pred HHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhcccccccc
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred ccc---cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCccee
Q 010640 423 GDK---AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVS 499 (505)
Q Consensus 423 ~~~---~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 499 (505)
++. .+.+++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ ++|+++|+++++||||||+.-
T Consensus 328 ~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~~-----a~fv~~t~~~~~E~~~h~~~~ 402 (404)
T PRK06843 328 QLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN-----SKFVKISHSSLKESHPHDVFN 402 (404)
T ss_pred ccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHhc-----CeEEEEchhhhhccCCCcccC
Confidence 842 356799999999999999999999999999999999999999999998 599999999999999999875
Q ss_pred c
Q 010640 500 Y 500 (505)
Q Consensus 500 ~ 500 (505)
+
T Consensus 403 ~ 403 (404)
T PRK06843 403 I 403 (404)
T ss_pred C
Confidence 4
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-73 Score=565.24 Aligned_cols=347 Identities=48% Similarity=0.740 Sum_probs=313.0
Q ss_pred CCcccceeecCCCCCCCC--CCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHh
Q 010640 23 SYTYDDVIFLPHYIDFPI--DAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVS 100 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~--~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~ 100 (505)
+||||||+|+|+++++.+ .++++.|++++++.+++|+|+|+||++|+.+||++|++.||+|+||.++++++|.+++++
T Consensus 2 ~ltfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~e~q~~~v~~ 81 (352)
T PF00478_consen 2 GLTFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSIEEQAEEVKK 81 (352)
T ss_dssp E--GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCHHHHHHHHHH
T ss_pred CCccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccchHHHHHHHHHhcCCceecCCCCHHHHHHHHhh
Confidence 589999999999988555 567777889999999999999999999999999999999999999999999999999998
Q ss_pred hhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEec
Q 010640 101 AKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 101 v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~ 180 (505)
+++. .|
T Consensus 82 vK~~------~~-------------------------------------------------------------------- 87 (352)
T PF00478_consen 82 VKRY------YP-------------------------------------------------------------------- 87 (352)
T ss_dssp HHTH------HT--------------------------------------------------------------------
T ss_pred hccc------cc--------------------------------------------------------------------
Confidence 8764 11
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
.+ .+|..+++.++++++..++..++++.|+++|
T Consensus 88 --------------------------------------------~a---~~d~~~~l~V~aavg~~~~~~er~~~L~~ag 120 (352)
T PF00478_consen 88 --------------------------------------------NA---SKDEKGRLLVAAAVGTRDDDFERAEALVEAG 120 (352)
T ss_dssp --------------------------------------------TH---HBHTTSCBCEEEEEESSTCHHHHHHHHHHTT
T ss_pred --------------------------------------------cc---cccccccceEEEEecCCHHHHHHHHHHHHcC
Confidence 00 2344567889999998888999999999999
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHH
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAV 340 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l 340 (505)
+|+++||.++|++..+++.++++|+.+|+++||+|||.|.+.++.|+++|+|+|.|++|+|++|+||...|+|+|+++++
T Consensus 121 vD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv 200 (352)
T PF00478_consen 121 VDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAV 200 (352)
T ss_dssp -SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHH
T ss_pred CCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhc--ccc
Q 010640 341 YKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK--GSD 418 (505)
Q Consensus 341 ~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~--~~~ 418 (505)
.+|+++++++++|||+||||+++.|++|||++|||+||+|++|+.|.|||++.++++|++||.||||||+.||.+ ++.
T Consensus 201 ~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~ 280 (352)
T PF00478_consen 201 YECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSG 280 (352)
T ss_dssp HHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTG
T ss_pred HHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 889
Q ss_pred ccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccC
Q 010640 419 QRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495 (505)
Q Consensus 419 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~ 495 (505)
+|||.+.....++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||++ .+|+++|+++++||+||
T Consensus 281 ~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~-----~~fvrvs~a~~~e~~~H 352 (352)
T PF00478_consen 281 DRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKK-----ARFVRVSSAGIKESHPH 352 (352)
T ss_dssp CTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHH-----HEEEEESHHHHHHHSS-
T ss_pred hhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC-----CeEEEEChhhccccCCC
Confidence 9999887777899999999999999999999999999999999999999999999 59999999999999999
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-64 Score=488.38 Aligned_cols=323 Identities=28% Similarity=0.398 Sum_probs=295.2
Q ss_pred CCcccceeecCCCCCCCC-CCeeeeeeec----CcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPI-DAVSLSTRLT----RNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARL 97 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~-~~~~~~~~lt----~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~ 97 (505)
.|+|+||+|+|.++.+.+ +++++..+++ +.....+|+|+|+|+++++.+||++|++.|+++++|++++++++.++
T Consensus 8 ~l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~e~~~~f 87 (346)
T PRK05096 8 KLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEWAAF 87 (346)
T ss_pred CCCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCccccHHHHHHHHHCCCeEEEecCCCHHHHHHH
Confidence 899999999999998877 7999977776 45556799999999999999999999999999999999999998887
Q ss_pred HHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCce
Q 010640 98 VVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 98 v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~ 177 (505)
+++++.. . .
T Consensus 88 v~~~~~~-------~-------------------------------~--------------------------------- 96 (346)
T PRK05096 88 VNNSSAD-------V-------------------------------L--------------------------------- 96 (346)
T ss_pred HHhcccc-------c-------------------------------c---------------------------------
Confidence 7653211 0 0
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
..+.++++..++..++++.|+
T Consensus 97 -----------------------------------------------------------~~~~vavG~~~~d~er~~~L~ 117 (346)
T PRK05096 97 -----------------------------------------------------------KHVMVSTGTSDADFEKTKQIL 117 (346)
T ss_pred -----------------------------------------------------------ceEEEEecCCHHHHHHHHHHH
Confidence 011124445666889999999
Q ss_pred Hc--CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC
Q 010640 258 KA--GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
Q Consensus 258 ea--Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p 335 (505)
++ ++|+|++|.++||+..+++.++++|+.+|+++||+|||.|.+.++.|+++|||+++|++|+|++|+|+...|.|.|
T Consensus 118 ~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~P 197 (346)
T PRK05096 118 ALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYP 197 (346)
T ss_pred hcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChh
Confidence 94 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHh-
Q 010640 336 QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT- 414 (505)
Q Consensus 336 ~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~- 414 (505)
+++++.+|++++++.++|||+||||+++.||+|||++|||+||+|++|+.|+|||++.++.+|++||.||||||..||.
T Consensus 198 QltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~ 277 (346)
T PRK05096 198 QLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKR 277 (346)
T ss_pred HHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccc
Q 010640 415 -KGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGA 487 (505)
Q Consensus 415 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~ 487 (505)
.++.+||| .+||++.++||+|++.+++.+|.++||++|+|+|+++|+|||++ ++|+++|++
T Consensus 278 ~~g~~~ry~-------~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~q 339 (346)
T PRK05096 278 HVGGVAEYR-------AAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR-----TTFIRVQEQ 339 (346)
T ss_pred ccCcccccc-------cccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC-----CeEEEEChh
Confidence 47777886 47999999999999999999999999999999999999999999 699999876
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-63 Score=483.07 Aligned_cols=323 Identities=28% Similarity=0.424 Sum_probs=298.2
Q ss_pred CCcccceeecCCCCCCCC-CCeeeeeeec----CcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPI-DAVSLSTRLT----RNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARL 97 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~-~~~~~~~~lt----~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~ 97 (505)
.|+|+||+|+|.++.+.+ +++++.++++ ++..+.+|+|+|+|+++++.+||++|++.|+++++|++++++++.++
T Consensus 7 ~l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv~~~~mA~~la~~g~~~~iHk~~~~e~~~~~ 86 (343)
T TIGR01305 7 KLDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEWKAF 86 (343)
T ss_pred CCCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcccCHHHHHHHHHCCCeEEEeeCCCHHHHHHH
Confidence 899999999999998877 8999999999 78899999999999999999999999999999999999999998877
Q ss_pred HHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCce
Q 010640 98 VVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 98 v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~ 177 (505)
+++++.- .
T Consensus 87 v~~~~~~-------~----------------------------------------------------------------- 94 (343)
T TIGR01305 87 ATNSSPD-------C----------------------------------------------------------------- 94 (343)
T ss_pred HHhhccc-------c-----------------------------------------------------------------
Confidence 7643220 0
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
. ..+.++++..++..++++.|+
T Consensus 95 --------------------------------------------------------~--~~~~vsvG~~~~d~er~~~L~ 116 (343)
T TIGR01305 95 --------------------------------------------------------L--QNVAVSSGSSDNDLEKMTSIL 116 (343)
T ss_pred --------------------------------------------------------c--ceEEEEeccCHHHHHHHHHHH
Confidence 0 011124445666889999999
Q ss_pred HcC--ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC
Q 010640 258 KAG--VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
Q Consensus 258 eaG--ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p 335 (505)
+++ +|+|++|.++||+..+++.++++|+.||+.+|+.|||.|++.|+.|+++|||+|+|++|+|++|++|..+|.|.|
T Consensus 117 ~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~p 196 (343)
T TIGR01305 117 EAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYP 196 (343)
T ss_pred hcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcC
Confidence 985 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHh-
Q 010640 336 QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMT- 414 (505)
Q Consensus 336 ~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~- 414 (505)
+++++.+|+++++..++|||+||||+++.||+|||++||++||+|++|+.+.|+|++..+++|++||.||||||..||.
T Consensus 197 qltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~ 276 (343)
T TIGR01305 197 QLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKK 276 (343)
T ss_pred HHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhh
Confidence 9999999999998889999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccc
Q 010640 415 -KGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGA 487 (505)
Q Consensus 415 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~ 487 (505)
.++.+|||. +||++.++||+|++.+++.+|.++||++|+|+|+++|+||+++ ++|+++|++
T Consensus 277 ~~g~~~ry~~-------~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~-----a~fv~vt~~ 338 (343)
T TIGR01305 277 HAGGVAEYRA-------SEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR-----ATFIRVTQQ 338 (343)
T ss_pred ccCccccccc-------ccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC-----CEEEEECcc
Confidence 477788875 3899999999999999999999999999999999999999998 699999887
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-57 Score=455.64 Aligned_cols=325 Identities=53% Similarity=0.815 Sum_probs=296.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.++++++.|++++.+.+++|+|++||+++++.+|++++++.||+|++|.+++++++.+.+++++
T Consensus 1 ~~~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~~~~~~~i~~vk 80 (325)
T cd00381 1 GLTFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSIEEQAEEVRKVK 80 (325)
T ss_pred CCCcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhc
Confidence 48999999999999999999999999999899999999999999999999999999999999999998888776666543
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
. +
T Consensus 81 ~--------~---------------------------------------------------------------------- 82 (325)
T cd00381 81 G--------R---------------------------------------------------------------------- 82 (325)
T ss_pred c--------C----------------------------------------------------------------------
Confidence 1 1
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+.+++.++..++..++++.++++|++
T Consensus 83 ------------------------------------------------------l~v~~~~~~~~~~~~~~~~l~eagv~ 108 (325)
T cd00381 83 ------------------------------------------------------LLVGAAVGTREDDKERAEALVEAGVD 108 (325)
T ss_pred ------------------------------------------------------ceEEEecCCChhHHHHHHHHHhcCCC
Confidence 01111222223466889999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+++++.++|++..+.+.++++++.+|+++|++|++.|.+.|+.+.++|+|+|+++.++|+.|.++...+++.|+++++.+
T Consensus 109 ~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~ 188 (325)
T cd00381 109 VIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVAD 188 (325)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHH
Confidence 99999999988888999999999987799999999999999999999999999988888889998889999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
+.+.++..++|||++|||.++.|++|||++||++||+|++|+.|.|||++..+++|+++|.||||+|+.+|..++.+|||
T Consensus 189 v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~ 268 (325)
T cd00381 189 VAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYF 268 (325)
T ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCcccccc
Confidence 99988877899999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred ccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEe
Q 010640 423 GDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVR 484 (505)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~ 484 (505)
++..+..++||+++.+|++|++.+.+.+|.++||++|+|+|++||+|||++ ++|+++
T Consensus 269 ~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~-----~~~~~~ 325 (325)
T cd00381 269 GEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEK-----ARFVRI 325 (325)
T ss_pred ccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhc-----CeEEeC
Confidence 987788899999999999999999999999999999999999999999999 588874
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=396.78 Aligned_cols=315 Identities=27% Similarity=0.421 Sum_probs=275.7
Q ss_pred CCcccceeecCCCCCC-CCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDF-PIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~-~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
.|||||+.|+|..... ..++++++++++ ++++.+|+++++|++.++.+|+.++.+.|.++++|+ ++++++.+.+++.
T Consensus 1 ~~~FddV~lvp~~lp~~s~~dVdlst~~~-~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~~~E~~~sfvrk~ 78 (321)
T TIGR01306 1 VFDYEDIQLIPNKCIVNSRSECDTSVTLG-KHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR-FDEESRIPFIKDM 78 (321)
T ss_pred CCCcccEEEecCCCCCCCHHHceeeEEEC-CcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhc
Confidence 3899999999998544 458999999999 889999999999999999999999999999999998 6888776544321
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~ 181 (505)
+ +
T Consensus 79 k---------~--------------------------------------------------------------------- 80 (321)
T TIGR01306 79 Q---------E--------------------------------------------------------------------- 80 (321)
T ss_pred c---------c---------------------------------------------------------------------
Confidence 1 1
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC-
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG- 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG- 260 (505)
..+.++++++..++..+++..++++|
T Consensus 81 -----------------------------------------------------~~L~v~~SvG~t~e~~~r~~~lv~a~~ 107 (321)
T TIGR01306 81 -----------------------------------------------------RGLFASISVGVKACEYEFVTQLAEEAL 107 (321)
T ss_pred -----------------------------------------------------cccEEEEEcCCCHHHHHHHHHHHhcCC
Confidence 01234556666777889999999998
Q ss_pred -ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC--hH
Q 010640 261 -VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QA 337 (505)
Q Consensus 261 -ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~ 337 (505)
+|++++|.+|||+..+++.++++++.+|...+++|+|.+.+.|+.|.++|+|+|+|++|+|++|+++...+.|.+ ++
T Consensus 108 ~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l 187 (321)
T TIGR01306 108 TPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 187 (321)
T ss_pred CCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHH
Confidence 799999999999999999999999999777799999999999999999999999999999999999988777765 78
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~ 417 (505)
+++.++++.+ ++|||+||||+++.|++|||++|||+||+|++|+.|.|||++..+.+|++||.||||++.
T Consensus 188 ~ai~ev~~a~---~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~------- 257 (321)
T TIGR01306 188 AALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASE------- 257 (321)
T ss_pred HHHHHHHHhc---CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhh-------
Confidence 8898887754 589999999999999999999999999999999999999999999999999999998642
Q ss_pred cccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccccccc
Q 010640 418 DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVE 491 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e 491 (505)
|..+.. ...||+++.+|++|++.+++.+|.++||++|+|+|+++|+|||+ ++|++++.++..+
T Consensus 258 ---~~~~~~--~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~------~~~~~~~~~~~~~ 320 (321)
T TIGR01306 258 ---FQKGEH--KNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRT------VDYVIVKNSIFNG 320 (321)
T ss_pred ---hccccc--ccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhh------CCEEEEecCCcCC
Confidence 222221 22499999999999999999999999999999999999999996 4999999998764
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=379.50 Aligned_cols=317 Identities=26% Similarity=0.424 Sum_probs=276.6
Q ss_pred CCcccceeecCCCC-CCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYI-DFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~-~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+|+|||+.|+|... ....++++++++++ ++++..|+++++|.+.++.+||..+.+.|+++++|+ ++++++...++++
T Consensus 4 ~l~Fddv~lv~~~lp~~s~~dvdlst~~~-~~~l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k-~~~e~~~~~~r~~ 81 (326)
T PRK05458 4 VFDYEDIQLIPNKCIVNSRSECDTSVTLG-PRTFKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR-FDPEARIPFIKDM 81 (326)
T ss_pred ccCccceEEecCCCCCCCHHHcccceEEC-CcEecCcEEEecccchhHHHHHHHHHHcCCEEEEec-CCHHHHHHHHHhc
Confidence 69999999999874 54558999999998 789999999999999999999999999999999999 7787765555221
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~ 181 (505)
+|
T Consensus 82 ---------~~--------------------------------------------------------------------- 83 (326)
T PRK05458 82 ---------HE--------------------------------------------------------------------- 83 (326)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 11
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+++++++++..++..+++..++++|+
T Consensus 84 -----------------------------------------------------~~l~v~~~vg~~~~~~~~~~~Lv~ag~ 110 (326)
T PRK05458 84 -----------------------------------------------------QGLIASISVGVKDDEYDFVDQLAAEGL 110 (326)
T ss_pred -----------------------------------------------------cccEEEEEecCCHHHHHHHHHHHhcCC
Confidence 012345566666668899999999955
Q ss_pred --cEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC--hH
Q 010640 262 --NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QA 337 (505)
Q Consensus 262 --d~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~ 337 (505)
|++.+|.++||+....+.++++++.+|+++||+|+|.|.++++.|.++|+|++.+++++|+.|.++...+.+.| ++
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l 190 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 190 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988877777788 77
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~ 417 (505)
+++.++++. .++|||++|||+++.|++|||++||++||+|++|+.+.|||++..+++|++||.||||.+
T Consensus 191 ~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~-------- 259 (326)
T PRK05458 191 AALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSAS-------- 259 (326)
T ss_pred HHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHh--------
Confidence 788888764 359999999999999999999999999999999999999999999999999999999764
Q ss_pred cccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCc
Q 010640 418 DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGG 493 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 493 (505)
+|..+. ....||+++.+|++|++.++|.+|.++||++|+|+|++||+|||+ ++|+++|.+++.|..
T Consensus 260 --~~~~~~--~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~------~~~v~~~~~~~~~~~ 325 (326)
T PRK05458 260 --EFQKGE--YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRK------VDYVIVKNSIFNGDK 325 (326)
T ss_pred --hhcccc--ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhc------CCEEEEecCcccccc
Confidence 232211 233499999999999999999999999999999999999999996 499999999998853
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-45 Score=367.99 Aligned_cols=320 Identities=26% Similarity=0.396 Sum_probs=253.4
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc------CCCCHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH------SNCTAADQAR 96 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~------~~~~~~~~~~ 96 (505)
+++||||.|+|+++++.++++++.|.+ +++.+.+|+++++|+++++..|+.++++.|++|++| ...+++.+..
T Consensus 15 ~~~fddV~lvp~~~~~~~~dvdls~~~-~~~~i~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~ 93 (368)
T PRK08649 15 AYGLDEIAIVPSRRTRDPEDVSTSWQI-DAYRFEIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILD 93 (368)
T ss_pred cCCcceEEEeCCCCCCCHHHceeeeee-cceeccCcEeccCCcccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHH
Confidence 789999999999999999999999665 699999999999999999999999999999999999 5566776665
Q ss_pred HHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCc
Q 010640 97 LVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 97 ~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~ 176 (505)
++...+. .++.+.+++ + .. .+
T Consensus 94 qi~~~~~--------------------~~~~~~~~~------------------------------------~-~~--~P 114 (368)
T PRK08649 94 EIASLGK--------------------DEATRLMQE------------------------------------L-YA--EP 114 (368)
T ss_pred HHHhcCc--------------------HHHHHHHHH------------------------------------h-hc--CC
Confidence 5543221 011111111 0 00 00
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
...+.+.+.++.+.+.+ ++| ...+ .+.+..++++.+
T Consensus 115 ---~~p~l~~~iv~~~~~~~---V~v-------------------------------------~vr~-~~~~~~e~a~~l 150 (368)
T PRK08649 115 ---IKPELITERIAEIRDAG---VIV-------------------------------------AVSL-SPQRAQELAPTV 150 (368)
T ss_pred ---CCHHHHHHHHHHHHhCe---EEE-------------------------------------EEec-CCcCHHHHHHHH
Confidence 00111233333444321 221 1122 234578999999
Q ss_pred HHcCccEEEEeC-----CCCCch-hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccc
Q 010640 257 VKAGVNVVVLDS-----SQGNSS-FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 257 ieaGad~I~i~~-----~~g~~~-~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+++|+|++++|. .++++. .+.+..+.+++ . ++||++|++.|.+.++.+.++|||+|.++.|+|+.|+++...
T Consensus 151 ~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~-~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~ 228 (368)
T PRK08649 151 VEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-L-DVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVL 228 (368)
T ss_pred HHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-C-CCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccC
Confidence 999999999975 233333 35555554554 4 899999999999999999999999999998888899998899
Q ss_pred ccCcChHHHHHHHHHHHhhc-------CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeee
Q 010640 331 AVGRGQATAVYKVSSIAAQS-------GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKK 403 (505)
Q Consensus 331 g~g~p~~~~l~~v~~~~~~~-------~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~ 403 (505)
++|.|+++++.+++++++++ ++|||++|||+++.|++|||++||++||+|++|+.|.|||++..
T Consensus 229 g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~--------- 299 (368)
T PRK08649 229 GIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGW--------- 299 (368)
T ss_pred CCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCccc---------
Confidence 99999999999998765543 59999999999999999999999999999999999999999974
Q ss_pred ecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHH----------HHHHHHHHHhhccCCCCHHHHHHh
Q 010640 404 YRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIP----------YTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 404 ~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
||||+|.. ..++||+++++||+|+++++|. +|.++||++|+|+|++||+|||+.
T Consensus 300 ~~gm~s~~----------------~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~ 363 (368)
T PRK08649 300 HWGMAAPH----------------PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKV 363 (368)
T ss_pred ccCcccCC----------------CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhc
Confidence 68999843 3589999999999999999998 999999999999999999999985
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=290.52 Aligned_cols=321 Identities=25% Similarity=0.371 Sum_probs=227.5
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc------CCCCHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH------SNCTAADQAR 96 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~------~~~~~~~~~~ 96 (505)
+|+||||.|+|+++.+.|+++++.|.+ +++.+.+|++.|||+.++...++..+.+.|++|++. .+..++...
T Consensus 12 ~~~~d~i~~vp~~~t~~~~~v~~~~~i-~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~- 89 (369)
T TIGR01304 12 TYSLDDISVVPSRRTRSSKDVDTAWQI-DAYRFELPFIAHPMDALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAI- 89 (369)
T ss_pred cCCcceEEEcCCCCCCChhhccceeEE-cceecCCceeecCCCcccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHH-
Confidence 799999999999999999999999987 699999999999999999999999999999999864 233333222
Q ss_pred HHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-CeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCC
Q 010640 97 LVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSS 175 (505)
Q Consensus 97 ~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~ 175 (505)
.++... .++....++.+++.+ +. .
T Consensus 90 --~QI~g~-------------~~~~~~a~aa~~~~e~~~----------------------------------------~ 114 (369)
T TIGR01304 90 --AKIAEA-------------YEEGDQAAATRLLQELHA----------------------------------------A 114 (369)
T ss_pred --HHHhhc-------------CCChHHHHHHHHHHHcCC----------------------------------------C
Confidence 111111 111111345544433 10 0
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHH
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEH 255 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~ 255 (505)
+ + ...-+.+.++.+.+.. +.+...+ .+....+.++.
T Consensus 115 ~--~-~p~l~~~ii~~vr~a~----------------------------------------VtvkiRl-~~~~~~e~a~~ 150 (369)
T TIGR01304 115 P--L-KPELLGERIAEVRDSG----------------------------------------VITAVRV-SPQNAREIAPI 150 (369)
T ss_pred c--c-ChHHHHHHHHHHHhcc----------------------------------------eEEEEec-CCcCHHHHHHH
Confidence 0 0 0011122222222211 1222233 23457899999
Q ss_pred HHHcCccEEEEeCCC---CC---chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccc
Q 010640 256 LVKAGVNVVVLDSSQ---GN---SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEV 329 (505)
Q Consensus 256 lieaGad~I~i~~~~---g~---~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~ 329 (505)
++++|+|++++|... .+ ...+. .+.++++.+ ++||++|++.+.++++++.++|+|+|.++ .|+.++++..
T Consensus 151 l~eAGad~I~ihgrt~~q~~~sg~~~p~-~l~~~i~~~-~IPVI~G~V~t~e~A~~~~~aGaDgV~~G--~gg~~~~~~~ 226 (369)
T TIGR01304 151 VVKAGADLLVIQGTLVSAEHVSTSGEPL-NLKEFIGEL-DVPVIAGGVNDYTTALHLMRTGAAGVIVG--PGGANTTRLV 226 (369)
T ss_pred HHHCCCCEEEEeccchhhhccCCCCCHH-HHHHHHHHC-CCCEEEeCCCCHHHHHHHHHcCCCEEEEC--CCCCcccccc
Confidence 999999999998531 11 12233 344455555 89999999999999999999999999854 3445667777
Q ss_pred cccCcChHHHHHHHHHHHhh----cC---CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEee
Q 010640 330 CAVGRGQATAVYKVSSIAAQ----SG---VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVK 402 (505)
Q Consensus 330 ~g~g~p~~~~l~~v~~~~~~----~~---ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k 402 (505)
.+++.|+++++.+++++++. .+ +|||++|||+++.|++|||++|||+||+|++|+.+.|||+.-+||
T Consensus 227 lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w------ 300 (369)
T TIGR01304 227 LGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFW------ 300 (369)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCcc------
Confidence 78999999999998766542 33 999999999999999999999999999999999999999998776
Q ss_pred eecccCcHHHHhccccccccccccccccccceeeeeccCC---chhhHH----------HHHHHHHHHHhhccCCCCHHH
Q 010640 403 KYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKG---SVLKFI----------PYTMQAVKQGFQDLGASSLQS 469 (505)
Q Consensus 403 ~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~----------~~l~~~l~~~m~~~G~~~~~~ 469 (505)
||.. ....+|+|....+...| +++++| .+|.++||++|..+|+.+++|
T Consensus 301 ---~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~ 361 (369)
T TIGR01304 301 ---PAAA----------------AHPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKE 361 (369)
T ss_pred ---chhh----------------cCccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhh
Confidence 3321 11224444333332222 455555 589999999999999999999
Q ss_pred HHHh
Q 010640 470 AHDL 473 (505)
Q Consensus 470 l~~~ 473 (505)
||+.
T Consensus 362 ~~~~ 365 (369)
T TIGR01304 362 FQKV 365 (369)
T ss_pred hhhc
Confidence 9985
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=211.45 Aligned_cols=161 Identities=25% Similarity=0.323 Sum_probs=125.5
Q ss_pred cCccEEEEeCCC--------CC--chhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 259 AGVNVVVLDSSQ--------GN--SSFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 259 aGad~I~i~~~~--------g~--~~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+++++.++... +. ...+++.++.+++.+ ++||++|.+ .+.++++.+.++|+|+|+++++||+...
T Consensus 139 ~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~ 217 (326)
T cd02811 139 IEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWA 217 (326)
T ss_pred cCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCccc
Confidence 456776666522 22 134557888888887 899999766 6899999999999999999865442110
Q ss_pred --------------cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCc
Q 010640 326 --------------TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPG 391 (505)
Q Consensus 326 --------------~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~ 391 (505)
...+.+|++|+..++.++++... ++|||++|||+++.|++|||++||++|++|++|+...
T Consensus 218 ~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~--~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~---- 291 (326)
T cd02811 218 RVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP--DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA---- 291 (326)
T ss_pred ccccccccccccccccccccccccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH----
Confidence 12246789999999988876543 6999999999999999999999999999999997321
Q ss_pred cceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 392 AYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 392 ~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
. .|.+ .+.++++.|..+||..|.++|++++.||+
T Consensus 292 ----------------------~-----------------~g~~-------~~~~~i~~~~~el~~~m~~~G~~si~el~ 325 (326)
T cd02811 292 ----------------------L-----------------EGEE-------AVIETIEQIIEELRTAMFLTGAKNLAELK 325 (326)
T ss_pred ----------------------h-----------------cCHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence 0 0111 47799999999999999999999999997
Q ss_pred H
Q 010640 472 D 472 (505)
Q Consensus 472 ~ 472 (505)
+
T Consensus 326 ~ 326 (326)
T cd02811 326 Q 326 (326)
T ss_pred C
Confidence 3
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=205.28 Aligned_cols=163 Identities=23% Similarity=0.303 Sum_probs=127.4
Q ss_pred cCccEEEEeCCC--------CC--chhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcce--
Q 010640 259 AGVNVVVLDSSQ--------GN--SSFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSI-- 323 (505)
Q Consensus 259 aGad~I~i~~~~--------g~--~~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~-- 323 (505)
.++|++.++... ++ ...+++.++++++.+ ++||++|.+ .+.+.++.+.++|+|+|+|++++|+.
T Consensus 147 ~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~ 225 (352)
T PRK05437 147 IEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWA 225 (352)
T ss_pred cCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCcc
Confidence 356676666422 22 134568888898887 899999877 68999999999999999998655421
Q ss_pred --eecc--------cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccc
Q 010640 324 --CTTQ--------EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAY 393 (505)
Q Consensus 324 --~~~~--------~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~ 393 (505)
+..+ .+.+||.|++.++.++++.. .++|||++|||+++.|++|++++||++|++|++|+...
T Consensus 226 ~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~--~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~------ 297 (352)
T PRK05437 226 AIENYRARDDRLASYFADWGIPTAQSLLEARSLL--PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAA------ 297 (352)
T ss_pred chhhhhhhccccccccccccCCHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHH------
Confidence 1112 25688999999998887653 36999999999999999999999999999999986310
Q ss_pred eeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 394 VYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 394 ~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
...|.+ .+.++++.|..+||..|.++|+++++||++.
T Consensus 298 ------------------------------------~~~g~~-------~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~ 334 (352)
T PRK05437 298 ------------------------------------LEGGEE-------AVIELIEQWIEELKIAMFLTGAKNIAELRKV 334 (352)
T ss_pred ------------------------------------HhccHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCCC
Confidence 011211 4778999999999999999999999999875
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=203.13 Aligned_cols=143 Identities=28% Similarity=0.409 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..++.++++++.+ ++||++|+|.+.++|+.+.++|+|+|+|+++||+- .+|+.|++.+|.++++.+. .++||
T Consensus 212 ~~w~~i~~~~~~~-~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~------~d~~~~~~~~L~~i~~~~~-~~~~i 283 (356)
T PF01070_consen 212 LTWDDIEWIRKQW-KLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQ------LDWGPPTIDALPEIRAAVG-DDIPI 283 (356)
T ss_dssp -SHHHHHHHHHHC-SSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTS------STTS-BHHHHHHHHHHHHT-TSSEE
T ss_pred CCHHHHHHHhccc-CCceEEEecccHHHHHHHHhcCCCEEEecCCCccc------CccccccccccHHHHhhhc-CCeeE
Confidence 4568899999998 89999999999999999999999999999887753 5689999999999998764 46999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++||++|||++|.+|++|+. +.+ ..|.
T Consensus 284 ~~dgGir~g~Dv~kalaLGA~~v~igr~~l~--------------------~l~----------------------~~g~ 321 (356)
T PF01070_consen 284 IADGGIRRGLDVAKALALGADAVGIGRPFLY--------------------ALA----------------------AGGE 321 (356)
T ss_dssp EEESS--SHHHHHHHHHTT-SEEEESHHHHH--------------------HHH----------------------HHHH
T ss_pred EEeCCCCCHHHHHHHHHcCCCeEEEccHHHH--------------------HHH----------------------HhhH
Confidence 9999999999999999999999999999962 211 1222
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+ .+.+.++.|..+|+.+|+++|++++.||++..
T Consensus 322 ~-------gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~ 354 (356)
T PF01070_consen 322 E-------GVERVLEILKEELKRAMFLLGARSIAELRRSL 354 (356)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGG
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHh
Confidence 2 47899999999999999999999999999864
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=198.71 Aligned_cols=143 Identities=22% Similarity=0.280 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++|+.+ ++||++|+|.+.++|+.+.++|+|+|+|++++|+. . ++..+++.+|.++++... .++||
T Consensus 211 ~tW~di~wlr~~~-~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq-----l-d~~~~t~~~L~ei~~av~-~~~~v 282 (367)
T PLN02493 211 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ-----L-DYVPATISALEEVVKATQ-GRIPV 282 (367)
T ss_pred CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCC-----C-CCchhHHHHHHHHHHHhC-CCCeE
Confidence 3578899999998 89999999999999999999999999999888742 2 355688999999877654 35999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+...++. |.
T Consensus 283 i~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~------------------------------------------G~ 320 (367)
T PLN02493 283 FLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAE------------------------------------------GE 320 (367)
T ss_pred EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc------------------------------------------CH
Confidence 999999999999999999999999999997322111 11
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+ .+...++.|..+|+.+|.++||+++.||++..
T Consensus 321 ~-------gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~ 353 (367)
T PLN02493 321 A-------GVRKVLQMLRDEFELTMALSGCRSLKEISRNH 353 (367)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhh
Confidence 1 37899999999999999999999999998763
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=196.07 Aligned_cols=142 Identities=24% Similarity=0.316 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--CC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--GV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--~i 352 (505)
..++.++++++.+ ++||++|++.+.++|+.+.++|+|+|++++++|.. .. ...+++.++.++.+..+.. ++
T Consensus 200 ~~~~~i~~l~~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~-----~d-~~~~~~~~L~~i~~~~~~~~~~~ 272 (344)
T cd02922 200 LTWDDIKWLRKHT-KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQ-----LD-TAPAPIEVLLEIRKHCPEVFDKI 272 (344)
T ss_pred CCHHHHHHHHHhc-CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCccc-----CC-CCCCHHHHHHHHHHHHHHhCCCc
Confidence 4578899999988 89999999999999999999999999999877653 22 3467888898888765433 59
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQ 432 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~ 432 (505)
|||++|||+++.|++|||++||++|++|++|+.+.++.+. +
T Consensus 273 ~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~---------------------------------------~ 313 (344)
T cd02922 273 EVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGE---------------------------------------E 313 (344)
T ss_pred eEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccH---------------------------------------H
Confidence 9999999999999999999999999999999754322110 1
Q ss_pred ceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHH
Q 010640 433 GVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 433 g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
.+.+.++.|..+|+..|.++|+++++||+.
T Consensus 314 ----------gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~ 343 (344)
T cd02922 314 ----------GVEKAIQILKDEIETTMRLLGVTSLDQLGP 343 (344)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCc
Confidence 478999999999999999999999999964
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=194.69 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++++.+ ++||++|+|.+.++|+.+.++|+|+|+|++++|+. . +++.+++.++.++++... .++||
T Consensus 210 ltW~dl~wlr~~~-~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq-----l-d~~p~t~~~L~ei~~~~~-~~~~V 281 (366)
T PLN02979 210 LSWKDVQWLQTIT-KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ-----L-DYVPATISALEEVVKATQ-GRIPV 281 (366)
T ss_pred CCHHHHHHHHhcc-CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC-----C-CCchhHHHHHHHHHHHhC-CCCeE
Confidence 3468899999998 89999999999999999999999999999887742 2 355678999998877654 35999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+...++ .|.
T Consensus 282 i~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~------------------------------------------~G~ 319 (366)
T PLN02979 282 FLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAA------------------------------------------EGE 319 (366)
T ss_pred EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHh------------------------------------------cCH
Confidence 99999999999999999999999999999732111 121
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+ ++...++.|..+|+.+|.++|++++.||.+..
T Consensus 320 ~-------Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~ 352 (366)
T PLN02979 320 A-------GVRKVLQMLRDEFELTMALSGCRSLKEISRNH 352 (366)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhh
Confidence 1 47899999999999999999999999998763
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=198.28 Aligned_cols=147 Identities=23% Similarity=0.276 Sum_probs=118.7
Q ss_pred hHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcce----eec--------ccccccCcChHHH
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSI----CTT--------QEVCAVGRGQATA 339 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~----~~~--------~~~~g~g~p~~~~ 339 (505)
.+++.++.+++.+ ++||++|.+ .+.+.++.+.++|+|+|++++++|.. +.. ..+.+|++|+..+
T Consensus 166 ~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~ 244 (333)
T TIGR02151 166 GWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAAS 244 (333)
T ss_pred HHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHH
Confidence 4568899999987 799999766 68999999999999999998654431 111 2246789999998
Q ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccc
Q 010640 340 VYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQ 419 (505)
Q Consensus 340 l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~ 419 (505)
+.++++. ..++|||++|||+++.|++|+|++|||+|++|++|+... +
T Consensus 245 l~~~~~~--~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~-------------------------~------ 291 (333)
T TIGR02151 245 LLEVRSD--APDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAA-------------------------L------ 291 (333)
T ss_pred HHHHHhc--CCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHH-------------------------H------
Confidence 8887651 246999999999999999999999999999999986321 0
Q ss_pred cccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 420 RYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 420 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
..|.+ .+.+.++.|..+||..|.++|++++.||++.
T Consensus 292 -----------~~g~~-------~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~ 327 (333)
T TIGR02151 292 -----------DEGEE-------AVIEEIELIIEELKVAMFLTGAKTIAELKKV 327 (333)
T ss_pred -----------hcCHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHHccC
Confidence 01211 4779999999999999999999999999875
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=196.81 Aligned_cols=142 Identities=22% Similarity=0.295 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+++||+. . +.+.|++.+|.++++... .++||
T Consensus 240 ~tW~~i~~lr~~~-~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~-----~-d~~~~t~~~L~ei~~~~~-~~~~v 311 (383)
T cd03332 240 LTWEDLAFLREWT-DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ-----V-DGSIAALDALPEIVEAVG-DRLTV 311 (383)
T ss_pred CCHHHHHHHHHhc-CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC-----C-CCCcCHHHHHHHHHHHhc-CCCeE
Confidence 3478899999998 89999999999999999999999999999887743 2 346899999999988764 25999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+. |++. .|.
T Consensus 312 i~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~--------------------~l~~----------------------~G~ 349 (383)
T cd03332 312 LFDSGVRTGADIMKALALGAKAVLIGRPYAY--------------------GLAL----------------------GGE 349 (383)
T ss_pred EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH--------------------HHHh----------------------ccH
Confidence 9999999999999999999999999999972 2210 111
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+ ++++.|+.|..+|+.+|.++|++++.||++.
T Consensus 350 ~-------gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~ 381 (383)
T cd03332 350 D-------GVEHVLRNLLAELDLTMGLAGIRSIAELTRD 381 (383)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCcc
Confidence 1 4789999999999999999999999999753
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-21 Score=191.64 Aligned_cols=166 Identities=21% Similarity=0.308 Sum_probs=132.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
..+.++.+.+.|++++.++..+.. ....++.++++++.+ ++||++|++.+.++++.+.++|+|+|++++++|..
T Consensus 131 ~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~-~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~--- 206 (299)
T cd02809 131 TEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-KGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ--- 206 (299)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhc-CCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC---
Confidence 344556666778998888664331 113467889999987 68999999999999999999999999998765531
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRG 406 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g 406 (505)
..++.|++.++.++++.... ++|||++|||+++.|++|+|++||++|++|++|+....+
T Consensus 207 ---~~~g~~~~~~l~~i~~~~~~-~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~----------------- 265 (299)
T cd02809 207 ---LDGAPATIDALPEIVAAVGG-RIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAA----------------- 265 (299)
T ss_pred ---CCCCcCHHHHHHHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHh-----------------
Confidence 23678899999888776532 599999999999999999999999999999998631100
Q ss_pred cCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 407 MGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 407 ~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
.|.+ .+.++++.|..+|+..|.++|+++++||+
T Consensus 266 -------------------------~g~~-------~v~~~i~~l~~el~~~m~~~G~~~i~~l~ 298 (299)
T cd02809 266 -------------------------GGEA-------GVAHVLEILRDELERAMALLGCASLADLD 298 (299)
T ss_pred -------------------------cCHH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence 1111 47789999999999999999999999985
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-21 Score=192.20 Aligned_cols=143 Identities=22% Similarity=0.308 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..++.++++++.+ ++||++|+|.++++|+.+.++|+|+|++++++|. . .+++.|++.++.++.+... .++||
T Consensus 210 ~tW~~i~~lr~~~-~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr-----~-~d~~~~t~~~L~ev~~av~-~~ipV 281 (364)
T PLN02535 210 LSWKDIEWLRSIT-NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGAR-----Q-LDYSPATISVLEEVVQAVG-GRVPV 281 (364)
T ss_pred CCHHHHHHHHhcc-CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcC-----C-CCCChHHHHHHHHHHHHHh-cCCCE
Confidence 3578899999987 8999999999999999999999999999987763 2 3567888999998877553 25999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|++|||+++.|++|||++||++|++|++|+...++.+. +
T Consensus 282 i~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~---------------------------------------~-- 320 (364)
T PLN02535 282 LLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE---------------------------------------D-- 320 (364)
T ss_pred EeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH---------------------------------------H--
Confidence 99999999999999999999999999999743221111 1
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
++.+.++.|..+|+.+|.++|+++++||+...
T Consensus 321 --------gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~ 352 (364)
T PLN02535 321 --------GVRKVIEMLKDELEITMALSGCPSVKDITRSH 352 (364)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhh
Confidence 47789999999999999999999999998763
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-21 Score=191.84 Aligned_cols=142 Identities=20% Similarity=0.288 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.++++++.+ ++||++|+|.+.++|+.+.++|+|+|+|++|||. ++.+ +.+++.+|.++++... .++||
T Consensus 215 ~~w~~i~~l~~~~-~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGr-----q~~~-~~a~~~~L~ei~~av~-~~i~v 286 (367)
T TIGR02708 215 LSPRDIEEIAGYS-GLPVYVKGPQCPEDADRALKAGASGIWVTNHGGR-----QLDG-GPAAFDSLQEVAEAVD-KRVPI 286 (367)
T ss_pred CCHHHHHHHHHhc-CCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCcc-----CCCC-CCcHHHHHHHHHHHhC-CCCcE
Confidence 3467899999987 7999999999999999999999999999988873 3322 3456788888877643 35999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||+++.|++|||++||++|++|++|+. |++ ..|.
T Consensus 287 i~dGGIr~g~Dv~KaLalGAd~V~igR~~l~--------------------~la----------------------~~G~ 324 (367)
T TIGR02708 287 VFDSGVRRGQHVFKALASGADLVALGRPVIY--------------------GLA----------------------LGGS 324 (367)
T ss_pred EeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH--------------------HHH----------------------hcCH
Confidence 9999999999999999999999999999873 211 0122
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+ ++...++.|..+|+.+|+++||++++||++.
T Consensus 325 ~-------gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~ 356 (367)
T TIGR02708 325 Q-------GARQVFEYLNKELKRVMQLTGTQTIEDVKGF 356 (367)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcc
Confidence 2 4789999999999999999999999999875
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=189.34 Aligned_cols=137 Identities=22% Similarity=0.357 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ +.|+++|+|.+.++++.+.++|+|+|+|+++||.. .. ...+++.++.++++.+ ++|||
T Consensus 224 ~w~~i~~ir~~~-~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrq-----ld-~~~~~~~~L~ei~~~~---~~~vi 293 (361)
T cd04736 224 NWQDLRWLRDLW-PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQ-----LD-DAIAPIEALAEIVAAT---YKPVL 293 (361)
T ss_pred CHHHHHHHHHhC-CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCC-----Cc-CCccHHHHHHHHHHHh---CCeEE
Confidence 478899999998 78999999999999999999999999999887743 22 2356788888876653 59999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
+||||+++.||+|||++||++|++|++|+. |.+. .|.+
T Consensus 294 ~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~--------------------~la~----------------------~G~~ 331 (361)
T cd04736 294 IDSGIRRGSDIVKALALGANAVLLGRATLY--------------------GLAA----------------------RGEA 331 (361)
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHHh----------------------cCHH
Confidence 999999999999999999999999999962 2210 1211
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
++++.++.|..+|+.+|+++|++++.||.
T Consensus 332 -------gv~~~l~~l~~el~~~m~l~G~~~i~~l~ 360 (361)
T cd04736 332 -------GVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence 48899999999999999999999999984
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=177.75 Aligned_cols=142 Identities=24% Similarity=0.349 Sum_probs=121.6
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.|+.+++++... ++||++++|.+.++|+.+.++|+++|+|++|||+ +.+ ....++++|.|+.++... ++||
T Consensus 210 l~W~Di~wLr~~T-~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgR-----QlD-~vpAtI~~L~Evv~aV~~-ri~V 281 (363)
T KOG0538|consen 210 LSWKDIKWLRSIT-KLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGR-----QLD-YVPATIEALPEVVKAVEG-RIPV 281 (363)
T ss_pred CChhhhHHHHhcC-cCCeEEEeecccHHHHHHHHhCCceEEEeCCCcc-----ccC-cccchHHHHHHHHHHhcC-ceEE
Confidence 4578889999987 8999999999999999999999999999998874 333 234578899999887753 6999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
+.|||+++|.||.|||+|||.+|.+|++++ ||++. +|-
T Consensus 282 ~lDGGVR~G~DVlKALALGAk~VfiGRP~v--------------------~gLA~----------------------~Ge 319 (363)
T KOG0538|consen 282 FLDGGVRRGTDVLKALALGAKGVFIGRPIV--------------------WGLAA----------------------KGE 319 (363)
T ss_pred EEecCcccchHHHHHHhcccceEEecCchh--------------------eeecc----------------------ccc
Confidence 999999999999999999999999999986 34331 121
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.+|+++|+-|..++..+|.+.||+++.|+.+.
T Consensus 320 -------~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~ 351 (363)
T KOG0538|consen 320 -------AGVKKVLDILRDEFELTMALSGCRSVKEITRN 351 (363)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHhCCCchhhhCcc
Confidence 15889999999999999999999999999875
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-20 Score=190.15 Aligned_cols=141 Identities=18% Similarity=0.298 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ ++|+++|+|.+.++|+.+.++|+|+|+|+++||... .+ ..+++.++.++++... .++|||
T Consensus 233 tW~di~~lr~~~-~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~-----d~-~~~t~~~L~~i~~a~~-~~~~vi 304 (381)
T PRK11197 233 SWKDLEWIRDFW-DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQL-----DG-VLSSARALPAIADAVK-GDITIL 304 (381)
T ss_pred CHHHHHHHHHhC-CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCC-----CC-cccHHHHHHHHHHHhc-CCCeEE
Confidence 468899999998 899999999999999999999999999998877522 21 3578888888876543 369999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
+||||+++.||+|||++||++|++|++|+. +++. .|.+
T Consensus 305 ~dGGIr~g~Di~KALaLGA~~V~iGr~~l~--------------------~la~----------------------~G~~ 342 (381)
T PRK11197 305 ADSGIRNGLDVVRMIALGADTVLLGRAFVY--------------------ALAA----------------------AGQA 342 (381)
T ss_pred eeCCcCcHHHHHHHHHcCcCceeEhHHHHH--------------------HHHh----------------------ccHH
Confidence 999999999999999999999999999973 2110 1211
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
++.+.++.|..+|+.+|.++||+++.||++.
T Consensus 343 -------gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 373 (381)
T PRK11197 343 -------GVANLLDLIEKEMRVAMTLTGAKSISEITRD 373 (381)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCHh
Confidence 4889999999999999999999999999876
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=191.02 Aligned_cols=232 Identities=25% Similarity=0.324 Sum_probs=145.2
Q ss_pred eeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc-CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCC-CCHH
Q 010640 47 TRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH-SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPD-GCIN 124 (505)
Q Consensus 47 ~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~-~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~-~tv~ 124 (505)
|++|+.+.+++||++++|..++.++|+.++++.||+|+|. ...+++...+.+++++...+ .|+.+++... ....
T Consensus 2 t~~t~~lgi~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~----~pfgvnl~~~~~~~~ 77 (330)
T PF03060_consen 2 TRLTELLGIKYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTD----KPFGVNLFLPPPDPA 77 (330)
T ss_dssp -HHHHHHT-SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-S----S-EEEEEETTSTTHH
T ss_pred ChHHHHhCCCcCEEcCCCCCCChHHHHHHHHhCCCEeeccccccChHHHHHHHHHHHhhcc----ccccccccccCcccc
Confidence 6788889999999999999999999999999999999997 45688888888888776553 3521211100 0000
Q ss_pred HHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEee
Q 010640 125 DANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEK 204 (505)
Q Consensus 125 ~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd 204 (505)
+..+ .+.+.+ -....+++.+.++
T Consensus 78 ~~~~------------------------------------~~~~~~--------------~~~~~~~~~~~~~------- 100 (330)
T PF03060_consen 78 DEED------------------------------------AWPKEL--------------GNAVLELCIEEGV------- 100 (330)
T ss_dssp HH-H------------------------------------HHHHHT--------------HHHHHHHHHHTT--------
T ss_pred hhhh------------------------------------hhhhhh--------------HHHHHHHHHHhCc-------
Confidence 0000 000000 0011112222111
Q ss_pred CCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHH
Q 010640 205 DGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAK 284 (505)
Q Consensus 205 ~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~ 284 (505)
.+.+.++.+++.+++++.+ +.|.+ ..+.++.++
T Consensus 101 -------------------------------------------~~~~~~~~~~~~~~~~v~~--~~G~p--~~~~i~~l~ 133 (330)
T PF03060_consen 101 -------------------------------------------PFEEQLDVALEAKPDVVSF--GFGLP--PPEVIERLH 133 (330)
T ss_dssp -------------------------------------------SHHHHHHHHHHS--SEEEE--ESSSC---HHHHHHHH
T ss_pred -------------------------------------------ccccccccccccceEEEEe--ecccc--hHHHHHHHH
Confidence 1567788889999999987 44444 135667777
Q ss_pred HhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH
Q 010640 285 KTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363 (505)
Q Consensus 285 ~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~ 363 (505)
+. ++.++. .|.|.+.|+.+.++|+|+|++. ..+|++.. ... + ++...+.++++ ..++|||++|||.++
T Consensus 134 ~~--gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g-~~~---~-~~~~L~~~v~~---~~~iPViaAGGI~dg 202 (330)
T PF03060_consen 134 AA--GIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRG-FEV---G-STFSLLPQVRD---AVDIPVIAAGGIADG 202 (330)
T ss_dssp HT--T-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE----SS---G--HHHHHHHHHH---H-SS-EEEESS--SH
T ss_pred Hc--CCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCC-ccc---c-ceeeHHHHHhh---hcCCcEEEecCcCCH
Confidence 76 777766 8999999999999999999985 44455443 111 1 45555555554 456999999999999
Q ss_pred HHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 364 GHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 364 ~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
.+++.||++||++|+|||+|+.|.||+.+..||+
T Consensus 203 ~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~ 236 (330)
T PF03060_consen 203 RGIAAALALGADGVQMGTRFLATEESGASDAYKQ 236 (330)
T ss_dssp HHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHH
T ss_pred HHHHHHHHcCCCEeecCCeEEecccccChHHHHH
Confidence 9999999999999999999999999999988764
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=184.39 Aligned_cols=142 Identities=23% Similarity=0.281 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
-.++.+.++++.+ ..|++.++|.+++++..+...|+++|.+++|+| .+.+||+|++.+|.++..+... ++||
T Consensus 205 i~ked~~~i~~~~-~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhgg------rqlD~g~st~~~L~ei~~av~~-~~~v 276 (360)
T COG1304 205 ISKEDGAGISKEW-AGPLVLKGILAPEDAAGAGGTGADGIEVSNHGG------RQLDWGISTADSLPEIVEAVGD-RIEV 276 (360)
T ss_pred ccHHHHhHHHHhc-CCcHHHhCCCCHHHHHhhccCCceEEEEEcCCC------ccccCCCChHHHHHHHHHHhCC-CeEE
Confidence 3467788888887 889999999999999999999999999999877 3567999999999999887642 4999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|+||||++|.|++|||+|||++|++|++|+. +.+ ..|.
T Consensus 277 i~dGGiR~G~Dv~KAlALGA~~v~igrp~L~--------------------~l~----------------------~~g~ 314 (360)
T COG1304 277 IADGGIRSGLDVAKALALGADAVGIGRPFLY--------------------GLA----------------------AGGE 314 (360)
T ss_pred EecCCCCCHHHHHHHHHhCCchhhhhHHHHH--------------------HHH----------------------hccH
Confidence 9999999999999999999999999999972 111 1121
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+ +|.+.++.|..+|+.+|+++|++|++||++.
T Consensus 315 ~-------GV~~~le~~~~El~~~M~L~G~~~i~el~~~ 346 (360)
T COG1304 315 A-------GVERVLEIIRKELKIAMALTGAKNIEELKRV 346 (360)
T ss_pred H-------HHHHHHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 1 4889999999999999999999999999986
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=179.84 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ ++||++|++.++++|+.+.++|+|+|+|++|+|.. .. .+.+++..+.++.+... .++|||
T Consensus 209 ~~~~l~~lr~~~-~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~-----ld-~~~~~~~~l~~i~~a~~-~~i~vi 280 (351)
T cd04737 209 SPADIEFIAKIS-GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQ-----LD-GGPASFDSLPEIAEAVN-HRVPII 280 (351)
T ss_pred CHHHHHHHHHHh-CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCcc-----CC-CCchHHHHHHHHHHHhC-CCCeEE
Confidence 468889999987 79999999999999999999999999999887632 22 23456777887766543 259999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
++|||+++.|++|||++||++|++|++|+. |++. .|-+
T Consensus 281 ~dGGIr~g~Di~kaLalGA~~V~iGr~~l~--------------------~la~----------------------~G~~ 318 (351)
T cd04737 281 FDSGVRRGEHVFKALASGADAVAVGRPVLY--------------------GLAL----------------------GGAQ 318 (351)
T ss_pred EECCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHhh----------------------chHH
Confidence 999999999999999999999999999862 3321 1111
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
++.+.++.|..+|+.+|.++|+++++||++.
T Consensus 319 -------gv~~~l~~l~~El~~~m~l~G~~~i~el~~~ 349 (351)
T cd04737 319 -------GVASVLEHLNKELKIVMQLAGTRTIEDVKRT 349 (351)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHCCCCHHHhCCC
Confidence 4789999999999999999999999999753
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=178.61 Aligned_cols=204 Identities=25% Similarity=0.306 Sum_probs=154.2
Q ss_pred eeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc-CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHH
Q 010640 47 TRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH-SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND 125 (505)
Q Consensus 47 ~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~-~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~ 125 (505)
++||..+.+.+|+|++||..++..+|+.++++.||+|++. ...+++...+++++++...+ .| +.+
T Consensus 2 t~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~----~p--fgv-------- 67 (307)
T TIGR03151 2 TRLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTD----KP--FGV-------- 67 (307)
T ss_pred ChhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcC----CC--cEE--------
Confidence 5678888999999999999999999999999999999997 45577877777777665432 23 100
Q ss_pred HHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC
Q 010640 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD 205 (505)
Q Consensus 126 a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~ 205 (505)
++..
T Consensus 68 -------------------------------------------------n~~~--------------------------- 71 (307)
T TIGR03151 68 -------------------------------------------------NIML--------------------------- 71 (307)
T ss_pred -------------------------------------------------eeec---------------------------
Confidence 0000
Q ss_pred CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH
Q 010640 206 GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK 285 (505)
Q Consensus 206 g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~ 285 (505)
..+...+.++.+++.+++++.+ +.|.+. +.++++++
T Consensus 72 ---------------------------------------~~~~~~~~~~~~~~~~v~~v~~--~~g~p~---~~i~~lk~ 107 (307)
T TIGR03151 72 ---------------------------------------LSPFVDELVDLVIEEKVPVVTT--GAGNPG---KYIPRLKE 107 (307)
T ss_pred ---------------------------------------CCCCHHHHHHHHHhCCCCEEEE--cCCCcH---HHHHHHHH
Confidence 0011345677788899999987 345443 46777777
Q ss_pred hCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHH
Q 010640 286 TYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG 364 (505)
Q Consensus 286 ~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~ 364 (505)
. ++.++. .|.+.+.++.+.++|+|+|.+. ...|++.. ..+++..+.++.+ ..++|||++|||.++.
T Consensus 108 ~--g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g-------~~~~~~ll~~v~~---~~~iPviaaGGI~~~~ 174 (307)
T TIGR03151 108 N--GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHIG-------ELTTMALVPQVVD---AVSIPVIAAGGIADGR 174 (307)
T ss_pred c--CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCCC-------CCcHHHHHHHHHH---HhCCCEEEECCCCCHH
Confidence 6 677776 8899999999999999999884 22332221 1245555655544 4579999999999999
Q ss_pred HHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 365 HIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 365 di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
|+++++++||++|++||+|+.|.||+.+..|++
T Consensus 175 ~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~ 207 (307)
T TIGR03151 175 GMAAAFALGAEAVQMGTRFLCAKECNVHPNYKE 207 (307)
T ss_pred HHHHHHHcCCCEeecchHHhcccccCCCHHHHH
Confidence 999999999999999999999999999888764
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=174.91 Aligned_cols=136 Identities=28% Similarity=0.380 Sum_probs=101.6
Q ss_pred HHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeec
Q 010640 249 DKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~ 326 (505)
..+..+.+++. ++.++.. +.|. ...+.++.++.. ++.++. .+.+...|+++.++|+|++++. .++|++..+
T Consensus 92 ~~~~~~~ii~~~~vpvv~~--~~g~--~~~~~i~~~~~~--g~~v~~-~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~ 164 (336)
T COG2070 92 AEAGVDAIIEGAGVPVVST--SFGA--PPAEFVARLKAA--GIKVIH-SVITVREALKAERAGADAVIAQGAEAGGHRGG 164 (336)
T ss_pred hHHhhhhHHhcCCCCEEec--cCCC--CcHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHhCCCCEEEecCCcCCCcCCC
Confidence 45666677776 8888866 4442 123455556564 666666 7899999999999999999885 444544332
Q ss_pred ccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
.....++...+.++.+ .++ +|||++|||.+++++++||++||++|+|||+|+.|.||+++..||+
T Consensus 165 ---~~~~~~t~~Lv~ev~~---~~~~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~ 230 (336)
T COG2070 165 ---VDLEVSTFALVPEVVD---AVDGIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQ 230 (336)
T ss_pred ---CCCCccHHHHHHHHHH---HhcCCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHH
Confidence 1122344555555554 455 9999999999999999999999999999999999999999988875
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=172.02 Aligned_cols=170 Identities=16% Similarity=0.135 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC--CHHHHHHHHHcC-CCEEEEccCCcceeec--ccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV--TMYQAQNLIEAG-VDGLRVGMGSGSICTT--QEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~a~~l~~aG-ad~I~v~~g~g~~~~~--~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
..+.+.++++|+..++.||++|.+. +.+++..+.+.| +|+|.|++++|+.... .....||.|+..++.++.+++.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 4578899999999854899998776 466665555555 9999998654432222 2236789999999999988775
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++|||++|||+++.|++||+++|||+|++|++|+.+.+|.-.. .
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~------------------------------~ 328 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQAR------------------------------K 328 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHH------------------------------h
Confidence 43 5999999999999999999999999999999998766543110 1
Q ss_pred ccccccccceeeeecc----------CCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 425 KAKLKIAQGVVGAVAD----------KGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~~----------~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
|+++.+|-|+....+. ...+.++++.|..+|+..|..+|++++++|.+.
T Consensus 329 c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~ 387 (392)
T cd02808 329 CHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRS 387 (392)
T ss_pred cCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHH
Confidence 1222233333322210 115889999999999999999999999999765
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.4e-17 Score=167.85 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcC-CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-----
Q 010640 277 IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS----- 350 (505)
Q Consensus 277 ~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aG-ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~----- 350 (505)
.+.++.+++. +..|.++|+.+.+.| +|.|++...+|++.. ..|++..+..+.+.+...
T Consensus 152 ~~~v~~L~~~---------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~g-------~~~~~~Llp~v~~l~d~v~~~~~ 215 (418)
T cd04742 152 ERILKKLLAE---------GKITEEQAELARRVPVADDITVEADSGGHTD-------NRPLSVLLPTIIRLRDELAARYG 215 (418)
T ss_pred HHHHHHHHHc---------CCCCHHHHHHHHhCCCCCEEEEcccCCCCCC-------CccHHhHHHHHHHHHHHHhhccc
Confidence 4556666665 334999999999999 599999855555431 135555566655544322
Q ss_pred ---CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 351 ---GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 351 ---~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
++|||++|||.|+.+++.|+++||++|++||+|+.|.||+.+..+|+
T Consensus 216 ~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~ 265 (418)
T cd04742 216 YRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKD 265 (418)
T ss_pred cCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHH
Confidence 59999999999999999999999999999999999999999988874
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=161.23 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~ 327 (505)
..+.++.+++.+++++.+ +.|.+. .++.+++. ++.++. .|.|...++.+.++|+|+|++. ..+|++..
T Consensus 71 ~~~~l~vi~e~~v~~V~~--~~G~P~----~~~~lk~~--Gi~v~~-~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G-- 139 (320)
T cd04743 71 RAAQLAVVRAIKPTFALI--AGGRPD----QARALEAI--GISTYL-HVPSPGLLKQFLENGARKFIFEGRECGGHVG-- 139 (320)
T ss_pred hHHHHHHHHhcCCcEEEE--cCCChH----HHHHHHHC--CCEEEE-EeCCHHHHHHHHHcCCCEEEEecCcCcCCCC--
Confidence 346777888899999877 345442 24667776 777775 7899999999999999999985 44444321
Q ss_pred cccccCcChHHHHHHHHHHHh-------hcCCcEEecCCCCCHHHHHHHHHhCC--------CEEEecccccCCCCCCc
Q 010640 328 EVCAVGRGQATAVYKVSSIAA-------QSGVPVIADGGISNSGHIVKALVLGA--------STVMMGSFLAGSTEAPG 391 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~-------~~~ipvIa~GGI~~~~di~kal~lGA--------~~V~~G~~f~~~~Es~~ 391 (505)
..+++..+.++..... ..++|||++|||.++.+++.++++|| ++|+|||+|+.|+||+.
T Consensus 140 -----~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~~ 213 (320)
T cd04743 140 -----PRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAVS 213 (320)
T ss_pred -----CCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhcC
Confidence 1233434444433332 12699999999999999999999999 89999999999999983
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=166.19 Aligned_cols=95 Identities=22% Similarity=0.211 Sum_probs=76.4
Q ss_pred ccCCHHHHHHHHHcCC-CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--------CCcEEecCCCCCHHHH
Q 010640 296 NVVTMYQAQNLIEAGV-DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--------GVPVIADGGISNSGHI 366 (505)
Q Consensus 296 ~V~t~e~a~~l~~aGa-d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--------~ipvIa~GGI~~~~di 366 (505)
++.|.++|..+.+.|+ |.|++...+|++.. ..|++..+..+.+.++.. .+|||++|||.|+.++
T Consensus 167 G~it~eEA~~a~~~g~aD~Ivve~EAGGHtg-------~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~v 239 (444)
T TIGR02814 167 GRITREEAELARRVPVADDICVEADSGGHTD-------NRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAA 239 (444)
T ss_pred CCCCHHHHHHHHhCCCCcEEEEeccCCCCCC-------CCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHH
Confidence 3449999999999994 99988755555431 235666666665433322 5899999999999999
Q ss_pred HHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 367 VKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 367 ~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
+.||++||++|++||+|+.|.||+++..+|+
T Consensus 240 aAAlaLGAdgV~~GT~flat~Esgas~~~K~ 270 (444)
T TIGR02814 240 AAAFMLGADFIVTGSVNQCTVEAGTSDNVKK 270 (444)
T ss_pred HHHHHcCCcEEEeccHHHhCccccCCHHHHH
Confidence 9999999999999999999999999988874
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-15 Score=147.43 Aligned_cols=171 Identities=15% Similarity=0.216 Sum_probs=142.0
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHH-HHHHHcCCeeEEcCCCCHHHHHHHHH-h
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMA-AAMAALGGIGIVHSNCTAADQARLVV-S 100 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma-~al~~~Gg~g~i~~~~~~~~~~~~v~-~ 100 (505)
+|.-....|++|.+++...-+.+..+. .+|++++..|++|-..|. .|+++. .++ +
T Consensus 130 AL~~~~AVLvTGGF~~s~evi~lAne~------~lPvlstsYDTFTVAtmIN~Al~n~-----------------lIKkd 186 (432)
T COG4109 130 ALENGNAVLVTGGFDVSDEVIKLANEK------GLPVLSTSYDTFTVATMINKALSNQ-----------------LIKKD 186 (432)
T ss_pred HHhcCCeEEEeCCCCccHHHHHhhccc------CCceEEecccceeHHHHHHHHHHHh-----------------hhhhh
Confidence 566677889999988776555565553 489999999999977763 454421 111 2
Q ss_pred hhccCCccc--cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCC
Q 010640 101 AKSRRVPIF--SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSS 175 (505)
Q Consensus 101 v~~~~~~~~--~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~ 175 (505)
+..++|+|. .++ ..+.++++++++.++..+ ++ |||+|. ..+++|+||.+|+... .+++++..+|++ +
T Consensus 187 I~~Vedi~~P~~~~--~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~kvvGvVt~rDv~~~-~~~t~ieKVMtk--n 258 (432)
T COG4109 187 IITVEDIMTPLEDT--SYLRETDTVEDWLDLVEKTGHSRFPVVNR---SMKVVGVVTMRDVLDK-KPSTTIEKVMTK--N 258 (432)
T ss_pred eeeHHHhccccccc--eeccccccHHHHHHHHHHcCCCccceecc---cceEEEEEEehhhhcC-CCCccHHHHhcc--C
Confidence 445666666 456 789999999999999999 87 999998 9999999999999643 457789999999 9
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCC
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~ 224 (505)
++++.+.+++..+.++|...+++.+||+|+ .+++|+|||+|++++++..
T Consensus 259 p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 259 PITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred CeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999999999999998864
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=136.49 Aligned_cols=111 Identities=20% Similarity=0.317 Sum_probs=100.3
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc---ccccccccccccccCCCce
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN---LSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~---~~~~~~~v~~im~~~~~~~ 177 (505)
+.+.|.+++ +++.+++|++++.+++.+ ++ .||+| +++++|++|..|+.. ....+.+|.++|++ +++
T Consensus 174 V~~~~s~~~--i~v~~d~tl~eaak~f~~~~i~GaPVvd----~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k--~vi 245 (294)
T COG2524 174 VKNLMSKKL--ITVRPDDTLREAAKLFYEKGIRGAPVVD----DDKIVGIITLSDIAKAIANGNLDAKVSDYMRK--NVI 245 (294)
T ss_pred hhhhccCCc--eEecCCccHHHHHHHHHHcCccCCceec----CCceEEEEEHHHHHHHHHcCCccccHHHHhcc--CCc
Confidence 445788888 999999999999999999 87 99999 469999999999962 22457899999999 999
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++.+.+|+++|..+++.+|.|+|. |+++|+||++||+..+.
T Consensus 246 tI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 246 TINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred eEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 9999999999999999999999999997 99999999999998763
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=133.07 Aligned_cols=171 Identities=18% Similarity=0.202 Sum_probs=123.3
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC--------Cc--hhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG--------NS--SFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAGV 311 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g--------~~--~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aGa 311 (505)
.+++.+.++.+.++|+|+++++.++. .. ..+.+.++.+++.. ++||+++... ..+.++.+.++|+
T Consensus 113 ~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~ 191 (334)
T PRK07565 113 AGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGA 191 (334)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCC
Confidence 34566777888888999999976541 11 13567778888876 7999998332 2466788899999
Q ss_pred CEEEEccCCcc--eee--cccccccCcChHH----HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 312 DGLRVGMGSGS--ICT--TQEVCAVGRGQAT----AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 312 d~I~v~~g~g~--~~~--~~~~~g~g~p~~~----~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
|+|.+.+.... ..+ .+...+||++... ++..+++..+..++|||+.|||.|+.|+.+++.+||++||+|+.+
T Consensus 192 dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~ 271 (334)
T PRK07565 192 DGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASAL 271 (334)
T ss_pred CeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHH
Confidence 99988643211 111 1112345544322 344455555556799999999999999999999999999999987
Q ss_pred cCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccC
Q 010640 384 AGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLG 463 (505)
Q Consensus 384 ~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G 463 (505)
+. +| ..+++++..+|+..|...|
T Consensus 272 ~~----------------------------------------------~g-----------~~~~~~i~~~L~~~l~~~g 294 (334)
T PRK07565 272 LR----------------------------------------------HG-----------PDYIGTILRGLEDWMERHG 294 (334)
T ss_pred hh----------------------------------------------hC-----------cHHHHHHHHHHHHHHHHcC
Confidence 41 11 1567789999999999999
Q ss_pred CCCHHHHHHhh
Q 010640 464 ASSLQSAHDLL 474 (505)
Q Consensus 464 ~~~~~~l~~~~ 474 (505)
+++++||+..+
T Consensus 295 ~~~i~e~~g~~ 305 (334)
T PRK07565 295 YESLQQFRGSM 305 (334)
T ss_pred CCCHHHHhccc
Confidence 99999998764
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=112.95 Aligned_cols=100 Identities=15% Similarity=0.214 Sum_probs=89.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---cccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---NKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
++++++.++.++.+.|.+ +. +||+|+ +++++|+|+..|++.... ...++.++|.. ++.++.+++++.++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a 78 (111)
T cd04603 4 VSVNCENPLREAIKMINELGARAVVVVDE---ENKVLGQVTLSDLLEIGPNDYETLKVCEVYIV--PVPIVYCDSKVTDL 78 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHhhccccccccChhheeec--CCcEECCCCcHHHH
Confidence 789999999999999987 55 899987 899999999999874322 23579999988 88999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++|.+++...+||+|+ |+++|+||++|+++
T Consensus 79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 99999999999999998 99999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-13 Score=128.09 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=100.7
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----------cccccccccccc
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----------DNKVKIFDYMRD 172 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----------~~~~~v~~im~~ 172 (505)
++|.++. +++++++++.+|.+++.+ ++ +||+|+ +.+++||||.+|+.... ..+..++.+|++
T Consensus 249 dIMSrdV--vtv~~~ts~dhA~~ll~~H~ikaLPV~d~---~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~ 323 (382)
T COG3448 249 DIMSRDV--VTVSTDTSIDHARKLLQEHRIKALPVLDE---HRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT 323 (382)
T ss_pred HhcCccc--eecCCcCChHHHHHHHHHcCccccccccc---ccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC
Confidence 6888888 999999999999999999 87 999998 89999999999996211 246789999999
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.++++..+.+-.|.+.+.+.+||+|+ |+++||||.+|++.+..
T Consensus 324 --~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 324 --PVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred --cceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999998753
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=125.78 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=122.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCC-CCc---------hhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQ-GNS---------SFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAGV 311 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~-g~~---------~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aGa 311 (505)
.+++.+.++.+.+.|+|+++++.++ ... ..+.+.++.+++.. ++||++|-.. ..+.++.+.++|+
T Consensus 111 ~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 111 AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCC
Confidence 3446677777778899999998864 111 22457778888776 7899998332 2467788999999
Q ss_pred CEEEEccCCcc--eee--cccccccCc--ChH--HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 312 DGLRVGMGSGS--ICT--TQEVCAVGR--GQA--TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 312 d~I~v~~g~g~--~~~--~~~~~g~g~--p~~--~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
|+|.+.+.... ..+ .....++|. |.. .++..+++..+..++|||+.|||.|+.|+.+.+.+||++||+||.+
T Consensus 190 dgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~ 269 (325)
T cd04739 190 DGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSAL 269 (325)
T ss_pred CeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhh
Confidence 99998753211 110 011122222 211 2444555555556899999999999999999999999999999987
Q ss_pred cCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccC
Q 010640 384 AGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLG 463 (505)
Q Consensus 384 ~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G 463 (505)
+. +| ..++.++..+|+..|...|
T Consensus 270 ~~----------------------------------------------~g-----------p~~~~~i~~~L~~~l~~~g 292 (325)
T cd04739 270 LR----------------------------------------------HG-----------PDYIGTLLAGLEAWMEEHG 292 (325)
T ss_pred hh----------------------------------------------cC-----------chHHHHHHHHHHHHHHHcC
Confidence 41 11 1467789999999999999
Q ss_pred CCCHHHHHHhh
Q 010640 464 ASSLQSAHDLL 474 (505)
Q Consensus 464 ~~~~~~l~~~~ 474 (505)
.++++|++..+
T Consensus 293 ~~~i~e~~G~~ 303 (325)
T cd04739 293 YESVQQLRGSM 303 (325)
T ss_pred CCCHHHHhccc
Confidence 99999998763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=122.54 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=118.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCc--------------hhHHHHHHHHHHhCCCceEEEc---ccCCH-HHHHHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNS--------------SFQIEMIKYAKKTYPELDVIGG---NVVTM-YQAQNL 306 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~--------------~~~~~~i~~l~~~~~~~~Vi~g---~V~t~-e~a~~l 306 (505)
..+++.+.++.+.+.|+|+++++.++.+. ..+.+.++++++.. ++||++| ++.+. +.++.+
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa 203 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVA 203 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHH
Confidence 34667788888888899999998865432 12344446666665 7899997 33333 456778
Q ss_pred HHcCCCEEEEccCCcc---e--eecc---------cccccCcChHH--HHHHHHHHHhhc------CCcEEecCCCCCHH
Q 010640 307 IEAGVDGLRVGMGSGS---I--CTTQ---------EVCAVGRGQAT--AVYKVSSIAAQS------GVPVIADGGISNSG 364 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~---~--~~~~---------~~~g~g~p~~~--~l~~v~~~~~~~------~ipvIa~GGI~~~~ 364 (505)
.++|+|+|.+.+.-.. + ...+ ...|...|.+. ++..+++.++.. ++|||+.|||.++.
T Consensus 204 ~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~ 283 (385)
T PLN02495 204 LKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGG 283 (385)
T ss_pred HHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHH
Confidence 8999999988643211 1 1100 11112223333 333333433332 48999999999999
Q ss_pred HHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCch
Q 010640 365 HIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSV 444 (505)
Q Consensus 365 di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 444 (505)
|+++.+.+||++||++|.+.. +|.
T Consensus 284 Da~e~i~aGAs~VQv~Ta~~~----------------------------------------------~Gp---------- 307 (385)
T PLN02495 284 DAAEFILLGADTVQVCTGVMM----------------------------------------------HGY---------- 307 (385)
T ss_pred HHHHHHHhCCCceeEeeeeee----------------------------------------------cCc----------
Confidence 999999999999999998731 121
Q ss_pred hhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 445 LKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 445 ~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
.+++++..+|+..|..-|.++++|++...
T Consensus 308 -~vi~~i~~~L~~~m~~~G~~si~e~~G~~ 336 (385)
T PLN02495 308 -PLVKNLCAELQDFMKKHNFSSIEDFRGAS 336 (385)
T ss_pred -HHHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 56778999999999999999999998764
|
|
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=110.24 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=88.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc-c-----cccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN-L-----SDNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~-~-----~~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
.++++++++.++.+.|.+ ++ +||+|+ +|+++|+||.+|+.. . .....++.++|.+ +++++.+++++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l 78 (114)
T cd04619 4 AKIDVNATLQRAAKILGEPGIDLVVVCDP---HGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLL 78 (114)
T ss_pred EEECCCCcHHHHHHHHHhcCCCEEEEECC---CCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCH
Confidence 678999999999999987 65 899987 899999999999862 1 1234679999988 99999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 79 ~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 79 HDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred HHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 99999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-12 Score=108.09 Aligned_cols=101 Identities=17% Similarity=0.262 Sum_probs=88.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEeccccccc------cccccccccccccCCCceEecCCCC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENL------SDNKVKIFDYMRDCSSNVSVPANYD 184 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~------~~~~~~v~~im~~~~~~~~v~~~~~ 184 (505)
++++++.++.++++.|.+ ++ +||+++ + ++++|++|.+|++.. .....++.++|.+ ++++++++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 78 (114)
T cd04630 4 VTIDGLATVAEALQLMKEHGVSSLVVEKR---RESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMD 78 (114)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEEC---CCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCC
Confidence 789999999999999987 65 899986 6 899999999998631 1123578899987 8999999999
Q ss_pred HHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 185 l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
+.++++.|.+.+...+||+|+|+++|+||+.|++++
T Consensus 79 l~~~~~~~~~~~~~~~~Vvd~~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 79 IKYCARLMERTNIRRAPVVENNELIGIISLTDIFLA 114 (114)
T ss_pred HHHHHHHHHHcCCCEeeEeeCCEEEEEEEHHHhhcC
Confidence 999999999999999999988999999999998763
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=127.35 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=109.1
Q ss_pred cCccEEEEeCCCC--CchhHHHHHHHHHHhCCCceEEEcccC--CHHHHHH-HHHcCCCEEEEccCCcc--eeecccccc
Q 010640 259 AGVNVVVLDSSQG--NSSFQIEMIKYAKKTYPELDVIGGNVV--TMYQAQN-LIEAGVDGLRVGMGSGS--ICTTQEVCA 331 (505)
Q Consensus 259 aGad~I~i~~~~g--~~~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~a~~-l~~aGad~I~v~~g~g~--~~~~~~~~g 331 (505)
.|.+++.-...++ ..+.+.+.+.++|+..+..||.+|-+. ..++... +.++|+|+|.+..+.|+ .........
T Consensus 171 ~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~ 250 (368)
T PF01645_consen 171 PGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDH 250 (368)
T ss_dssp TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHH
T ss_pred CCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhh
Confidence 4666664322222 236788999999999888999887553 3343333 78899999999643332 333334677
Q ss_pred cCcChHHHHHHHHHHHhhc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeeccc
Q 010640 332 VGRGQATAVYKVSSIAAQS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGM 407 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~~~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~ 407 (505)
+|.|+..++.++.+.+.+. ++.+|++||++++.|++||++||||+|.+|+.++.+..|--
T Consensus 251 ~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~---------------- 314 (368)
T PF01645_consen 251 VGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQ---------------- 314 (368)
T ss_dssp C---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S----------------
T ss_pred CCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHH----------------
Confidence 8999999999999887654 38999999999999999999999999999999865433321
Q ss_pred CcHHHHhccccccccccccccccccceeeeecc----------CCchhhHHHHHHHHHHHHhhccCCC
Q 010640 408 GSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVAD----------KGSVLKFIPYTMQAVKQGFQDLGAS 465 (505)
Q Consensus 408 ~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~~l~~~l~~~m~~~G~~ 465 (505)
+..|+++.+|-|+..+.|. ...+.+++..+..+++..|..+|.+
T Consensus 315 --------------~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a~G~~ 368 (368)
T PF01645_consen 315 --------------CRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAALGKR 368 (368)
T ss_dssp -----------------CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHHHT-S
T ss_pred --------------HhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1122333444444433320 1257889999999999999998853
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.8e-12 Score=130.58 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=96.0
Q ss_pred ccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----c-ccccccccccc
Q 010640 103 SRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRD 172 (505)
Q Consensus 103 ~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~ 172 (505)
+..++|.+ ++ +++++++|+.++.+.|.+ ++ +||+|+ +|+++|+||.+|++... . .+.++.++|++
T Consensus 203 ~V~dim~~~~~~--~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~ 277 (326)
T PRK10892 203 RVSDIMHTGDEI--PHVSKTASLRDALLEITRKNLGMTVICDD---NMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP 277 (326)
T ss_pred cHHHHhCCCCCC--eEECCCCCHHHHHHHHHhcCCCeEEEEcC---CCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC
Confidence 34456776 67 899999999999999987 66 666787 89999999999986321 1 24679999998
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
+++++.+++++.++++.|.+++++++||+|+|+++|+||++|++++
T Consensus 278 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~lvGiit~~dil~~ 323 (326)
T PRK10892 278 --GGIRVRPGILAVDALNLMQSRHITSVLVADGDHLLGVLHMHDLLRA 323 (326)
T ss_pred --CCEEECCCCCHHHHHHHHHHCCCcEEEEeeCCEEEEEEEhHHhHhc
Confidence 9999999999999999999999999999988999999999999875
|
|
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-12 Score=105.80 Aligned_cols=100 Identities=18% Similarity=0.302 Sum_probs=89.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
..++++.++.++++.|.+ ++ +||+++ +++++|+++.+|++.......++.++|.+ ++.++.+++++.++++.
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~ 79 (109)
T cd04583 5 VTITPDRTLAEAIKLMRDKKVDSLLVVDK---DNKLLGIVSLESLEQAYKEAKSLEDIMLE--DVFTVQPDASLRDVLGL 79 (109)
T ss_pred EEECCCCCHHHHHHHHHHCCCceEEEEcC---CCcEEEEEEHHHHHHHhhcCCcHhHhhcC--CceEECCCCcHHHHHHH
Confidence 789999999999999987 65 899997 79999999999986443334678899988 89999999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+.+...+||+++ |+++|++|++|+++
T Consensus 80 ~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 80 VLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred HHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 99999999999998 99999999999875
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=113.51 Aligned_cols=132 Identities=30% Similarity=0.378 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~ 327 (505)
..+.++.+.+.|++.+.+... .+ .+.++.+++. +++++. .+.+.+.++.+.+.|+|+|.+. .+.++.....
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~--~~---~~~~~~~~~~--~i~~i~-~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~ 140 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFG--PP---AEVVERLKAA--GIKVIP-TVTSVEEARKAEAAGADALVAQGAEAGGHRGTF 140 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCC--CC---HHHHHHHHHc--CCEEEE-eCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCcc
Confidence 557788888899999988432 22 3455555554 577766 4678888999999999999773 2211111110
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceee
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQ 396 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~ 396 (505)
..+..+.+.++++ ..++||++.|||.++.|+.+++.+||++|++|+.|+.+.|++....++
T Consensus 141 -----~~~~~~~i~~i~~---~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~ 201 (236)
T cd04730 141 -----DIGTFALVPEVRD---AVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYK 201 (236)
T ss_pred -----ccCHHHHHHHHHH---HhCCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHH
Confidence 0133445554443 346999999999999999999999999999999999999999776554
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-13 Score=124.68 Aligned_cols=79 Identities=39% Similarity=0.556 Sum_probs=72.9
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
+||||||.|+|+++++.|++++++|.++.++++.+|+++|+||++++.+|+++|++.||+|++|++++++++..++.++
T Consensus 14 ~ltfddVll~p~~s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVtea~mAi~ma~~GGIGVih~nm~~~e~~~~v~~v 92 (170)
T COG0516 14 GLTFDDVLLLPAASDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVTEARMAIAMARDGGIGVMHGNMLAEESPGEYLYQ 92 (170)
T ss_pred CceeccCcchhhHHhhccCCCeeEecccCCcccCchHHHHHHHHHHHHHHhHHHHHcCCeEEEeccccHhhCCCceEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999999999996665444433
|
|
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-12 Score=107.88 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=88.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-c--------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-D--------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~--------------~~~~v~~im~~~~~~ 176 (505)
++++++.++.++.+.|.+ ++ +||+++ +|+++|+|+.+|+.... . ...++.++|.+ ++
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 79 (124)
T cd04600 5 VTVTPDTSLEEAWALLRRHRIKALPVVDG---DRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSP--PV 79 (124)
T ss_pred EEeCCCCCHHHHHHHHHHcCCceeeEECC---CCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccC--CC
Confidence 789999999999999988 66 999987 79999999999985221 1 13368899988 99
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
+++++++++.++++.|.+.+.+.+||+|+ |+++|+||+.|++.+
T Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 80 VTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred eeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999999999999999999997 999999999999863
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=105.80 Aligned_cols=103 Identities=27% Similarity=0.446 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC--CCCHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA--NYDLGQID 189 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~--~~~l~~a~ 189 (505)
+++++++++.++.+.|.+ ++ +||+|++..+++++|+++.+|++.......++.++|.+ +..++.. ++++.+++
T Consensus 5 ~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~~~l 82 (114)
T cd04602 5 SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDSETPLSEVMTP--REVLVVAPTGITLEEAN 82 (114)
T ss_pred eEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhccCCCHHHhcCC--CceEEECCCCCCHHHHH
Confidence 788999999999999987 65 89988421148999999999987543334568999987 6777766 99999999
Q ss_pred HHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 190 EVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 190 ~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+.|.+++...+||+|+ |+++|+||++|+++
T Consensus 83 ~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 83 EILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999998 99999999999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=103.20 Aligned_cols=89 Identities=17% Similarity=0.152 Sum_probs=78.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+++++++++.++.+.|.+ ++ +||+|++ +++++|+||.+|+... + .+.++.+++++.+++++
T Consensus 4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~--~~~~~Givt~~Dl~~~----------~----~~~~v~~~~~l~~a~~~ 67 (98)
T cd04618 4 VVFDTKLPVKKAFNALVENGIRSAPLWDSR--KQQFVGMLTITDFILI----------L----RLVSIHPERSLFDAALL 67 (98)
T ss_pred EEECCCCcHHHHHHHHHHcCCceEEEEeCC--CCEEEEEEEHHHHhhh----------e----eeEEeCCCCcHHHHHHH
Confidence 789999999999999988 65 9999861 3899999999998521 1 16789999999999999
Q ss_pred HHHCCCCeeEEeeC--CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD--GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~--g~l~GiIt~~dil~ 219 (505)
|.+++++++||+|+ |+++|+||.+|++.
T Consensus 68 m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 68 LLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred HHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 99999999999985 79999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=115.91 Aligned_cols=168 Identities=23% Similarity=0.229 Sum_probs=118.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC-----------chhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN-----------SSFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAG 310 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~-----------~~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aG 310 (505)
.+++.+.++.+.++|+|.++++.++.+ .....+.++.+++.. ++||.+|--. ..+.++.+.++|
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G 179 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAG 179 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcC
Confidence 456777788888889999999865422 234567788888876 7899886221 235578889999
Q ss_pred CCEEEEccCCcc--eee-c------ccccccCcCh--HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 311 VDGLRVGMGSGS--ICT-T------QEVCAVGRGQ--ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 311 ad~I~v~~g~g~--~~~-~------~~~~g~g~p~--~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+|+|.+.+...+ +.. + ....++..|. ...+..+.+..+..++|||+.|||.++.|+.+++.+|||+|++
T Consensus 180 ~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~i 259 (296)
T cd04740 180 ADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQV 259 (296)
T ss_pred CCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 999987532111 000 0 0011111121 1234444555555689999999999999999999999999999
Q ss_pred cccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHh
Q 010640 380 GSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGF 459 (505)
Q Consensus 380 G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m 459 (505)
|+.++. | -.+++++..+|...|
T Consensus 260 gra~l~-----------------------------------------------~-----------p~~~~~i~~~l~~~~ 281 (296)
T cd04740 260 GTANFV-----------------------------------------------D-----------PEAFKEIIEGLEAYL 281 (296)
T ss_pred chhhhc-----------------------------------------------C-----------hHHHHHHHHHHHHHH
Confidence 998752 0 045678999999999
Q ss_pred hccCCCCHHHHHH
Q 010640 460 QDLGASSLQSAHD 472 (505)
Q Consensus 460 ~~~G~~~~~~l~~ 472 (505)
...|..+++|++.
T Consensus 282 ~~~g~~~~~~~~g 294 (296)
T cd04740 282 DEEGIKSIEELVG 294 (296)
T ss_pred HHcCCCCHHHHhC
Confidence 9999999999975
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=104.50 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc----cccccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL----SDNKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~----~~~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
++++++.++.++++.|.+ ++ +||+++ +++++|++|.+|+... .....++.++|.+ ++.++++++++.+
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~ 79 (113)
T cd04607 5 LLVSPDASILDALRKIDKNALRIVLVVDE---NGRLLGTVTDGDIRRALLKGLSLDDPVSEVMNR--NPITAKVGSSREE 79 (113)
T ss_pred eEECCCCCHHHHHHHHHhcCcCEEEEECC---CCCEEEEEEcHHHHHHHhcCCCcCCCHHHhhcC--CCEEEcCCCCHHH
Confidence 789999999999999987 65 888887 8999999999998521 1224578999988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+|+ |+++|+||++|++.
T Consensus 80 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 80 ILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred HHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 999999999999999998 99999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=104.72 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=87.4
Q ss_pred eEeCCCCCHHHHHHHhcC-C-e--EEEEeCCCCCCeEEEEEeccccccccc---cccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-N-Y--VFVTESGTRRSRILGYVTKSDWENLSD---NKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~-~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
.++++++++.++.+.|.+ + + +||+|+ +++++|+|+.+|+..... ...++.++|.+..++.++.+++++.+
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~v~~~~~~~~~~~~v~~~~~l~~ 80 (114)
T cd04801 4 PTVPAHLTLREFVREYVLGSNQRRFVVVDN---EGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLVTVLSEESLAE 80 (114)
T ss_pred ceeCCCCCHHHHHHHHhccCCceeEEEEcC---CCcEEEEEEHHHHHHHHHhhccccchhhhhcccccceEECCCCcHHH
Confidence 678999999999998865 4 5 899987 899999999999863321 24578899975334679999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++..++||+|+ |+++|++|.+|+++
T Consensus 81 a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 81 VLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 999999999999999998 99999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=103.58 Aligned_cols=99 Identities=15% Similarity=0.316 Sum_probs=89.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
.++++++++.++.+.|.+ ++ +||+|+ +++++|+|+.+|+... ....++.++|.+ ++.++++++++.++++.
T Consensus 5 ~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~-~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~ 78 (108)
T cd04596 5 GYLTTTDTVKDWHELNKETGHSRFPVVDE---KNKVVGIVTSKDVAGK-DPDTTIEKVMTK--NPITVNPKTSVASVAHM 78 (108)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCceeEECC---CCeEEEEecHHHHhcc-cccccHHHHhcC--CCeEECCCCCHHHHHHH
Confidence 789999999999999987 65 999997 8999999999998643 234579999988 89999999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+ |+++|++|+.|+++
T Consensus 79 ~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 79 MIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred HHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999998 99999999999875
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=102.32 Aligned_cols=100 Identities=19% Similarity=0.324 Sum_probs=88.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC-CCCHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA-NYDLGQIDE 190 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~-~~~l~~a~~ 190 (505)
+.++++.++.++.+.|.+ ++ +||+|+ +++++|+++.+|++.......++.++|.. .+..+.. ++++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~ 79 (110)
T cd04601 5 ITVSPDATVAEALELMAEYGISGLPVVDD---DGKLVGIVTNRDLRFETDLDKPVSEVMTP--ENLLTTVEGTSLEEALE 79 (110)
T ss_pred eEeCCCCcHHHHHHHHHHcCCceEEEEcC---CCEEEEEEEhhHeeecccCCCCHHHhccc--CceEEecCCCCHHHHHH
Confidence 789999999999999987 65 899997 79999999999987544445688999976 6666677 999999999
Q ss_pred HHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 191 VLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 191 ~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 80 ~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 80 LLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred HHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 999999999999998 99999999999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=105.75 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=83.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c-cc---ccccc------ccccCCCceEe
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D-NK---VKIFD------YMRDCSSNVSV 179 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~-~~---~~v~~------im~~~~~~~~v 179 (505)
+++++++++.++++.|.+ ++ +||+++ +++++|+++.+|+.... . .. .++.+ .|.. ++.++
T Consensus 4 ~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 78 (120)
T cd04641 4 ATARPDTPLIDVLDMLVERRVSALPIVDE---NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRTC 78 (120)
T ss_pred EEEcCCCCHHHHHHHHHHcCCCeeeEECC---CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeEE
Confidence 789999999999999987 65 999987 89999999999986321 1 11 11222 3334 67899
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++++.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 79 ~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 79 SPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred cCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 99999999999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.7e-12 Score=126.67 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=96.0
Q ss_pred cCCccccC--CCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--c--ccccccccccccCC
Q 010640 104 RRVPIFSS--SLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--S--DNKVKIFDYMRDCS 174 (505)
Q Consensus 104 ~~~~~~~~--p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~--~~~~~v~~im~~~~ 174 (505)
+.++|.++ + +++++++++.++.+.|.+ +. +||+|+ +|+++|+||.+|++.. . ..+.++.++|++
T Consensus 199 V~~im~~~~~~--~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~-- 271 (321)
T PRK11543 199 VHHLMRRDDAI--PQVALTASVMDAMLELSRTGLGLVAVCDA---QQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTR-- 271 (321)
T ss_pred HHHHhccCCCC--cEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCC--
Confidence 34456666 6 899999999999999977 54 999997 8999999999998621 1 235679999998
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.++++..+||||+ |+++|+||++|++++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 9999999999999999999999999999998 999999999999976
|
|
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=104.86 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=86.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
+++++++++.++++.|.+ +. +||+|+ +++++|+||..|++... . ...++.++|++..++.++++++++.
T Consensus 4 ~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~ 80 (118)
T cd04617 4 VVVRENTSVYDAIVTLFLEDVGSLFVVDE---DGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence 789999999999999976 54 999997 79999999999986322 1 2456788887323688999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-C---eeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-G---ERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g---~l~GiIt~~dil~ 219 (505)
+++++|.+++++.+||+|+ + +++|+||++|+++
T Consensus 81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 9999999999999999987 3 8999999999865
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.1e-11 Score=101.01 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=79.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+.++++.++.++++.|.+ ++ +||+|+ +++++|+++.+|+.... .+.++.+++++.++++.
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~--------------~~~~v~~~~~l~~a~~~ 66 (96)
T cd04614 4 PTVWEETPLPVAVRIMELANVKALPVLDD---DGKLSGIITERDLIAKS--------------EVVTATKRTTVSECAQK 66 (96)
T ss_pred cEeCCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEEHHHHhcCC--------------CcEEecCCCCHHHHHHH
Confidence 789999999999999987 75 999997 89999999999985321 36789999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
|.+++.+++||+|+ |+++|+||++|++++
T Consensus 67 m~~~~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 67 MKRNRIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred HHHhCCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 99999999999999 999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=102.92 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=88.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----cccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----NKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
..+++++++.++++.|.+ ++ +||+++ +++++|+++.+|+..... .+.++.++|.+ ++.++.+++++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~ 78 (111)
T cd04626 4 PTIDEDASIREALHEMLKYNTNEIIVKDN---EEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTIDE 78 (111)
T ss_pred eEECCCccHHHHHHHHHHhCCCeEEEEcC---CCCEEEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHHH
Confidence 678999999999999987 65 999987 799999999999863221 13578899988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+|+|+++|+||+.|++.
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~~~~G~it~~di~~ 110 (111)
T cd04626 79 ALDIMREKQIGRLPVVDDNKLIGVVRTKDILD 110 (111)
T ss_pred HHHHHHHcCCCeeeEeECCEEEEEEEhHHhcc
Confidence 99999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-11 Score=103.15 Aligned_cols=100 Identities=18% Similarity=0.232 Sum_probs=88.4
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---cccccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---SDNKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~~~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
.++++++++.++.+.+.+ ++ +||+++ +++++|+|+..|+... .....++.++|.. ++.++.+++++.++
T Consensus 4 ~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~i~~~~~~~~~ 78 (111)
T cd04639 4 ETLSPADTLDDAADALLATTQHEFPVVDG---DGHLVGLLTRDDLIRALAEGGPDAPVRGVMRR--DFPTVSPSATLDAV 78 (111)
T ss_pred eEcCCCCcHHHHHHHHHHcCCCcceEECC---CCcEEEEeeHHHHHHHHHhcCCCCcHHHHhcC--CCcEECCCCcHHHH
Confidence 778999999999999977 65 999997 7999999999998632 1234578999987 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.|.+++...+||+|+ |+++|++|++|+.+
T Consensus 79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 99999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=102.02 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-cccccccccccccCCCceEecCCCCHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-SDNKVKIFDYMRDCSSNVSVPANYDLGQIDE 190 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~ 190 (505)
+++++++++.++++.|.+ ++ +||+++ +|+++|++|.+|+... .....++.++|.+ ++.++.+++++.++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~ 79 (110)
T cd04605 5 VTISEDASIKEAAKLMIEENINHLPVVDE---DGRLVGIVTSWDISKAVARDKKSVEDIMTR--NVITATPDEPIDVAAR 79 (110)
T ss_pred EEECCCCCHHHHHHHHHhCCCceEEEECC---CCcEEEEEeHHHHHHHHhhCccCHHHhcCC--CCeEECCCCcHHHHHH
Confidence 789999999999999987 65 899987 8999999999998522 2223468899987 8999999999999999
Q ss_pred HHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 191 VLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 191 ~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.|.+++...+||+++ |+++|+||+.|+++
T Consensus 80 ~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 80 KMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred HHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 999999999999998 99999999999864
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=107.81 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=87.4
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-----cccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-----SDNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-----~~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+++.+|+... ...+.++.++|++ ++.++.+++++.
T Consensus 5 ~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~ 79 (124)
T cd04608 5 VTVLPTVTCAEAIEILKEKGFDQLPVVDE---SGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKNDTLG 79 (124)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCCCCHH
Confidence 889999999999999987 65 999997 7999999999998621 2346789999999 999999999999
Q ss_pred HHHHHHH---------HCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 187 QIDEVLE---------KNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 187 ~a~~~l~---------~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.+++. +.+..++||+++ |+++|+||+.|+++.
T Consensus 80 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 80 KLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred HHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 9999653 336778899988 999999999999875
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=101.02 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=86.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
.+++++.++.++++.|.+ ++ +||+++ +|+++|+++..|++... ..++.++|.+ ...++.+++++.++++.
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g~~~Giv~~~dl~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 76 (106)
T cd04582 4 ITVRPDDPLSDALGLMDDSDLRALTVVDA---DGQPLGFVTRREAARAS--GGCCGDHAEP--FKVTVSVDDDLRIVLSR 76 (106)
T ss_pred cEecCCCcHHHHHHHHHhcCCCEEEEECC---CCCEEEEEeHHHHHHhc--ccchhhhccc--CCEEECCCCCHHHHHHH
Confidence 788999999999999977 54 889987 89999999999996422 2357889987 78889999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+ |+++|+||++|+++
T Consensus 77 ~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 77 MFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred HHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999998 99999999999875
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=102.99 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=88.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-------cccccccccccccCCCceEecCCCC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-------SDNKVKIFDYMRDCSSNVSVPANYD 184 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-------~~~~~~v~~im~~~~~~~~v~~~~~ 184 (505)
.+++++.++.++.+.|.+ ++ +||+++ +++++|+|+.+|+... .....++.++|.+ ++.++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~ 78 (114)
T cd04629 4 VTFTPDMSVTEAVEKLLKSKISGGPVVDD---NGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDS 78 (114)
T ss_pred eEeCCCCCHHHHHHHHHhcCCCCccEECC---CCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCc
Confidence 788999999999999987 65 899987 8999999999998621 1134678999988 8999999999
Q ss_pred HHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 185 l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+.++++.|.+++...+||+|+|+++|+||++|+++
T Consensus 79 l~~~~~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 113 (114)
T cd04629 79 IVDLAQLMLKAKPKRYPVVDDGKLVGQISRRDVLR 113 (114)
T ss_pred HHHHHHHHHHhCCCccCEEECCEEEEEEEHHHHhc
Confidence 99999999999999999998899999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=114.04 Aligned_cols=170 Identities=25% Similarity=0.274 Sum_probs=119.1
Q ss_pred CCccHHHHHHHHHHcC-ccEEEEeCCCCC-----------chhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHH
Q 010640 245 TRESDKERLEHLVKAG-VNVVVLDSSQGN-----------SSFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIE 308 (505)
Q Consensus 245 ~~~~~~e~~~~lieaG-ad~I~i~~~~g~-----------~~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~ 308 (505)
..+++.+.++.+.++| +|.++++.++.+ .+...+.++.+++.. +.||.+|--.+ .+.++.+.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHH
Confidence 3456777788888888 999999663321 244678888888887 78998873322 345788899
Q ss_pred cCCCEEEEccCC-cc-eee-c------ccccccCcCh--HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 309 AGVDGLRVGMGS-GS-ICT-T------QEVCAVGRGQ--ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 309 aGad~I~v~~g~-g~-~~~-~------~~~~g~g~p~--~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+|+|+|.+.+.. |. ... + ....+...|. ...+..+.+..+..++|||+.|||.++.|+.+++.+|||+|
T Consensus 181 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 181 AGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred cCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 999999875321 11 000 0 0001111111 11344445555556899999999999999999999999999
Q ss_pred EecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHH
Q 010640 378 MMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQ 457 (505)
Q Consensus 378 ~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 457 (505)
|+|+.++. | -.+++.+..+++.
T Consensus 261 ~igr~ll~-----------------------------------------------~-----------P~~~~~i~~~l~~ 282 (301)
T PRK07259 261 QVGTANFY-----------------------------------------------D-----------PYAFPKIIEGLEA 282 (301)
T ss_pred eEcHHHhc-----------------------------------------------C-----------cHHHHHHHHHHHH
Confidence 99998852 0 0456689999999
Q ss_pred HhhccCCCCHHHHHHh
Q 010640 458 GFQDLGASSLQSAHDL 473 (505)
Q Consensus 458 ~m~~~G~~~~~~l~~~ 473 (505)
.|...|.+++.|+...
T Consensus 283 ~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 283 YLDKYGIKSIEEIVGI 298 (301)
T ss_pred HHHHcCCCCHHHHhCc
Confidence 9999999999999754
|
|
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=106.51 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=88.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----------------------------cc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----------------------------NK 163 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----------------------------~~ 163 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+|+..|+..... .+
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04621 4 ATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP 80 (135)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCcceEECC---CCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence 788999999999999988 66 999997 899999999999862210 13
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++.++|.+ ++.++.+++++.++++.|.+++.+++||+++|+++|+||+.|+++
T Consensus 81 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~Gvit~~di~~ 134 (135)
T cd04621 81 LVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDNDNIVGVITKTDICR 134 (135)
T ss_pred ccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeCCEEEEEEEHHHHhh
Confidence 478999988 889999999999999999999999999998899999999999876
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-11 Score=98.82 Aligned_cols=98 Identities=13% Similarity=0.239 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+.+++++++.++++.|.+ ++ +||+| +++++|+++.+|+.... ...++.++|.+ ++.++++++++.++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~Giv~~~~l~~~~-~~~~~~~~~~~--~~~~v~~~~~l~~~~~~ 76 (105)
T cd04599 4 ITIDPLDSVGRAARLMEKHRIGGLPVVE----DGKLVGIITSRDVRRAH-PNRLVADAMTR--EVVTISPEASLLEAKRL 76 (105)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEEEEEehHHhhccc-ccCCHHHHccC--CCEEECCCCCHHHHHHH
Confidence 778999999999999987 65 88887 68999999999986432 34568899988 89999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+|+++|+||.+|++.
T Consensus 77 ~~~~~~~~~~Vv~~~~~~G~it~~~l~~ 104 (105)
T cd04599 77 MEEKKIERLPVLRERKLVGIITKGTIAL 104 (105)
T ss_pred HHHcCCCEeeEEECCEEEEEEEHHHhcc
Confidence 9999999999999999999999999873
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=105.81 Aligned_cols=124 Identities=27% Similarity=0.366 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.++.+.++|+|++.+|.+.- .+..+.+.++.+|+.+ +.+|+ .+.|.|++..+.++|+|+|-- .-..++.
T Consensus 53 T~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MA-Dist~ee~~~A~~~G~D~I~T----TLsGYT~ 125 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMA-DISTLEEAINAAELGFDIIGT----TLSGYTP 125 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEE-E-SSHHHHHHHHHTT-SEEE-----TTTTSST
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEee-ecCCHHHHHHHHHcCCCEEEc----ccccCCC
Confidence 55788899999999999998653 3467889999999986 67766 899999999999999999932 2223333
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
...+ ..|.+..+.++.+ .++|||+.|+|.+++++.+||.+||++|.+|+++.
T Consensus 126 ~t~~-~~pD~~lv~~l~~----~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAIT 177 (192)
T PF04131_consen 126 YTKG-DGPDFELVRELVQ----ADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAIT 177 (192)
T ss_dssp TSTT-SSHHHHHHHHHHH----TTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH
T ss_pred CCCC-CCCCHHHHHHHHh----CCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccC
Confidence 3333 4577777766543 37999999999999999999999999999999875
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-11 Score=100.84 Aligned_cols=100 Identities=15% Similarity=0.287 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-c-----ccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-S-----DNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~-----~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
+.++++.++.++.+.|.+ ++ +||+++ +++++|+++.+|+... . ....++.++|.+ ++.++.++.++
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 78 (113)
T cd04623 4 ITVRPDATVAEAAKLMAEKNIGAVVVVDD---GGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTV 78 (113)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcH
Confidence 778999999999999987 66 999987 7999999999998621 1 113578999988 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++++.|.+.+...+||+++|+++|+||.+|+++
T Consensus 79 ~~~l~~~~~~~~~~~~Vv~~~~~~Gvit~~di~~ 112 (113)
T cd04623 79 DEAMALMTERRFRHLPVVDGGKLVGIVSIGDVVK 112 (113)
T ss_pred HHHHHHHHHcCCCEeEEEeCCEEEEEEEHHHhhc
Confidence 9999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=105.07 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=84.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc--c---cc-------------ccccccccC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--N---KV-------------KIFDYMRDC 173 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--~---~~-------------~v~~im~~~ 173 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+++.+|++.... . .. ...+.|.+
T Consensus 4 ~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (126)
T cd04642 4 VSIDSDERVLDAFKLMRKNNISGLPVVDE---KGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSR- 79 (126)
T ss_pred EEECCCccHHHHHHHHHHhCCCcccEECC---CCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccC-
Confidence 789999999999999987 66 899997 899999999999873221 1 10 12245666
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.++++++++.+++++|.+++.+++||+|+ ++++|+||.+|+++
T Consensus 80 -~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 -PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred -CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 8999999999999999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-11 Score=101.10 Aligned_cols=98 Identities=22% Similarity=0.343 Sum_probs=86.7
Q ss_pred eCCCCCHHHHHHHhcC-C-----e--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHH
Q 010640 117 KAPDGCINDANDFDGS-N-----Y--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 117 v~~~~tv~~a~~~~~~-~-----~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
+++++++.++++.|.+ + + +||+|+ +++++|+|+.+|+... ..+.++.++|.+ ++.++.+++++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~~~~G~v~~~~l~~~-~~~~~v~~~~~~--~~~~i~~~~~~~~~ 75 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EGRLLGVVSLRDLLLA-DPDTPVSDIMDT--DVISVSADDDQEEV 75 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CCCEEEEEEHHHHhcC-CCcchHHHHhCC--CCeEEcCCCCHHHH
Confidence 5788999999999987 6 4 899987 7999999999998643 234578999988 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.|.+.+...+||+|+ |+++|+||+.|+++.
T Consensus 76 ~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 76 ARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 99999999999999998 999999999999875
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-11 Score=102.03 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=87.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.++++++++.++.+.|.+ ++ +||+|+ +++++|+++.+|++... . ...++.++|.+ ++.++.+++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~ 78 (115)
T cd04593 4 PVLSATTPLREAAEQLIESKHGSALVVDR---DGGVVGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPDEPLA 78 (115)
T ss_pred cEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CCCEEEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCCCCHH
Confidence 788999999999999987 65 899987 89999999999986321 1 23358889988 999999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERL 220 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~ 220 (505)
++++.|.+++...+||+|+ |+++|+||++|++++
T Consensus 79 ~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 79 HALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred HHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 9999999999999999986 589999999999863
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=105.10 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=83.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-----------cccccccccccccCCCceE--
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-----------SDNKVKIFDYMRDCSSNVS-- 178 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-----------~~~~~~v~~im~~~~~~~~-- 178 (505)
+++.+++++.++++.|.+ ++ +||+|+ +++++|+++.+|++.. .....++.++|++ +...
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~ 78 (126)
T cd04640 4 IVIPADTSIDEALELMIKHGVRLLLVVDS---DDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKA 78 (126)
T ss_pred eEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhcc
Confidence 789999999999999987 64 899987 7999999999998631 1134568899986 5433
Q ss_pred e----cCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhh
Q 010640 179 V----PANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVER 219 (505)
Q Consensus 179 v----~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~ 219 (505)
+ .+++++.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 79 ~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 79 LDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 3 36889999999999999999999986 59999999999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-10 Score=111.96 Aligned_cols=169 Identities=22% Similarity=0.214 Sum_probs=118.5
Q ss_pred CccHHHHHHHHHHc--CccEEEEeCCCCC-----------chhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHH
Q 010640 246 RESDKERLEHLVKA--GVNVVVLDSSQGN-----------SSFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIE 308 (505)
Q Consensus 246 ~~~~~e~~~~liea--Gad~I~i~~~~g~-----------~~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~ 308 (505)
.++..+.++.+.++ ++|.+.++.++.+ .....+.++.+++.. ++||.++--.+ .+.++.+.+
T Consensus 102 ~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~ 180 (300)
T TIGR01037 102 VEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEE 180 (300)
T ss_pred HHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHH
Confidence 45566667777665 3999999875422 245677888888876 78998874433 345778889
Q ss_pred cCCCEEEEccCC-cc-e--eec-----ccccccCcChHH--HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 309 AGVDGLRVGMGS-GS-I--CTT-----QEVCAVGRGQAT--AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 309 aGad~I~v~~g~-g~-~--~~~-----~~~~g~g~p~~~--~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+|+|+|.+.++- +. . ... ....+...|... ++..+.+..+..++|||+.|||.++.|+.+++..|||+|
T Consensus 181 ~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 181 AGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAV 260 (300)
T ss_pred cCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 999999986321 10 0 000 001111112221 344455555556799999999999999999999999999
Q ss_pred EecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHH
Q 010640 378 MMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQ 457 (505)
Q Consensus 378 ~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 457 (505)
|+|+.++. + + .++.++..+|+.
T Consensus 261 ~igr~~l~----------------------------------------------~----------p--~~~~~i~~~l~~ 282 (300)
T TIGR01037 261 QVGTAVYY----------------------------------------------R----------G--FAFKKIIEGLIA 282 (300)
T ss_pred eecHHHhc----------------------------------------------C----------c--hHHHHHHHHHHH
Confidence 99998752 0 1 466789999999
Q ss_pred HhhccCCCCHHHHHHh
Q 010640 458 GFQDLGASSLQSAHDL 473 (505)
Q Consensus 458 ~m~~~G~~~~~~l~~~ 473 (505)
.|...|.++++|++..
T Consensus 283 ~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 283 FLKAEGFTSIEELIGI 298 (300)
T ss_pred HHHHcCCCCHHHHhCc
Confidence 9999999999999754
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=133.86 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=119.3
Q ss_pred eeeeeeecCcccccceEEEccchh-hhH-----HHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhhccCCccccCCCeeE
Q 010640 43 VSLSTRLTRNIDLSLPCVASPMDT-VTE-----DYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVF 116 (505)
Q Consensus 43 ~~~~~~lt~~~~l~~Pli~a~m~~-vt~-----~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~ 116 (505)
+-+..|+|+++....|++.+.+-. .+. ..+...+.+..+ .+ ...+.++ ..+.+|.|.+++ .+
T Consensus 392 i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~-------~~--~~~~~L~-~~~V~dim~~~~--~~ 459 (574)
T PRK01862 392 ILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQ-------DE--AERERLR-TTQMRELIQPAQ--TV 459 (574)
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhcc-------cc--chhhHHh-hCcHHHHhcCCC--ce
Confidence 345678999999999998766421 111 011111111110 01 1111122 234556777777 88
Q ss_pred eCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---cc--cccccccccccCCCceEecCCCCHHHH
Q 010640 117 KAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---SD--NKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 117 v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~~--~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
+++++++.|+.+.|.+ +. +||+|+ +++++|+|+.+|++.. .. .+.++.++|++ ++.++++++++.++
T Consensus 460 v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~--~~~~v~~d~~L~~a 534 (574)
T PRK01862 460 VPPTASVADMTRVFLEYPVKYLYVVDD---DGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT--PFPLLTPDMPLGDA 534 (574)
T ss_pred eCCCCCHHHHHHHHHhCCCceEEEEcC---CCeEEEEEEHHHHHHHhhcccccccchHHHhccC--CCeeECCCCCHHHH
Confidence 9999999999999987 65 999997 8999999999998641 11 23578999998 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-C--eeeeEEeechhhhhhc
Q 010640 189 DEVLEKNDVDFVVLEKD-G--ERLDVVTREDVERLKG 222 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g--~l~GiIt~~dil~~~~ 222 (505)
++.|.+++.+.+||+|+ + +++|+||++|+++...
T Consensus 535 l~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 535 LEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred HHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 99999999999999986 3 8999999999998753
|
|
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-11 Score=99.51 Aligned_cols=97 Identities=20% Similarity=0.181 Sum_probs=86.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
+++++++++.++.+.|.+ ++ +||+| +++++|+++.+|+... ...++.++|.+ ++.+++++.++.++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~~l~~~--~~~~~~~~~~~--~~~~v~~~~~l~~a~~~ 75 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD----YNKFLGAVYLKDIENA--TYGDVVDYIVR--GIPYVRLTSTAEEAWEV 75 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE----CCEEEEEEEHHHHhhh--cccchhhhhhc--CCcEEcCCCCHHHHHHH
Confidence 688999999999999987 65 89998 5899999999998632 22457888987 88999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+|+++|+||++|+++
T Consensus 76 ~~~~~~~~~~Vv~~~~~iGvit~~dl~~ 103 (104)
T cd04594 76 MMKNKTRWCPVVDDGKFKGIVTLDSILD 103 (104)
T ss_pred HHHcCcceEEEEECCEEEEEEEHHHhhc
Confidence 9999999999998899999999999875
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-11 Score=102.78 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=85.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc------c----ccccccccccCCCceEecC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD------N----KVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~------~----~~~v~~im~~~~~~~~v~~ 181 (505)
+++++++++.++.+.|.+ ++ +||+|+ +++++|+++.+|+..... . ..++.++|.+ ++.++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~ 78 (116)
T cd04643 4 AYVQDTNTLRHALLVLTKHGYSAIPVLDK---EGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIID 78 (116)
T ss_pred EEECCCCcHHHHHHHHHHCCCceeeeECC---CCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecC
Confidence 789999999999999987 65 999997 799999999999863211 1 4578899988 8999999
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++++.++++.|.+.+ .+||+|+ |+++|+||+.|++++
T Consensus 79 ~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 79 DADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred CCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 999999999998865 5999998 999999999998763
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.8e-11 Score=106.47 Aligned_cols=100 Identities=22% Similarity=0.366 Sum_probs=88.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---------------------------cccc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---------------------------DNKV 164 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---------------------------~~~~ 164 (505)
++++++.++.++.+.|.+ ++ +||+|+ +++++|+|+.+|+.... ....
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04586 5 VTVSPETSVAEAARLMLDNHISGLPVVDD---DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR 81 (135)
T ss_pred EEeCCCCCHHHHHHHHHHcCCCCceEECC---CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence 789999999999999988 65 999997 89999999999985210 1235
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|+|+++|+||+.|+++
T Consensus 82 ~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~g~~~Gvit~~di~~ 134 (135)
T cd04586 82 KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGGRLVGIVSRADLLR 134 (135)
T ss_pred CHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEecCCEEEEEEEhHhhhc
Confidence 68899988 899999999999999999999999999999899999999999875
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-11 Score=101.19 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=88.4
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--cc---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--SD---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
..+++++++.++.+.|.+ ++ +||+|+ +++++|+++.+|+... .. ...++.++|.+ ++.++.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~ 78 (113)
T cd04615 4 SCVVLNTDIARAVAEMYTSGSRALPVVDD---KKRLVGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDANDSIA 78 (113)
T ss_pred EEeeCCCcHHHHHHHHHHcCCceEeEEcC---CCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCCCcHH
Confidence 789999999999999987 65 899987 7999999999998631 11 34578999988 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus 79 ~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 79 KARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred HHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.6e-11 Score=102.77 Aligned_cols=101 Identities=17% Similarity=0.256 Sum_probs=88.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------------ccccccccccccCCCce
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------------DNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------------~~~~~v~~im~~~~~~~ 177 (505)
++++++.++.++++.|.+ ++ +||+|+ +++++|+++..|++... ....++.++|.+ ++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (122)
T cd04635 4 VTCTPDDPVSKVWDLMLESGFTGLPVVQK---AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PVY 78 (122)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcccEECC---CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CCe
Confidence 789999999999999987 65 999987 89999999999986310 124567889987 899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.+++++.++++.|.+++.+.+||+|+ |+++|++|++|++++
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 79 SVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred eECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 9999999999999999999999999998 999999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-11 Score=100.86 Aligned_cols=100 Identities=24% Similarity=0.368 Sum_probs=88.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-c---ccccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-S---DNKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~---~~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
.+++++.++.++.+.|.+ ++ +||+++ +++++|+++.+|+... . ....++.++|.+ ++.++.+++++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~ 78 (112)
T cd04624 4 VTVDPDTSIREAAKLMAEENVGSVVVVDP---DERPIGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDEPVAE 78 (112)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEECC---CCCEEEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCCcHHH
Confidence 788999999999999977 65 899987 7999999999998532 1 234578899988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+++ |+++|++|++|+++
T Consensus 79 ~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 79 AAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred HHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-11 Score=102.99 Aligned_cols=100 Identities=20% Similarity=0.370 Sum_probs=88.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------------ccccccccccccCCCce
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------------DNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------------~~~~~v~~im~~~~~~~ 177 (505)
+++.+++++.++.+.|.+ ++ +||+++ +++++|+++.+|++... ....++.++|.. +++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 78 (122)
T cd04803 4 VTLSEDDSLADAEELMREHRIRHLPVVNE---DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKT--DVL 78 (122)
T ss_pred EEeCCCCcHHHHHHHHHHcCcccccEECC---CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCC--CCe
Confidence 788999999999999988 76 999997 79999999999986321 124578899987 899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.+++++.++++.|.+.+.+.+||+|+ |+++|+||+.|+++
T Consensus 79 ~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 79 TVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred EeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 9999999999999999999999999999 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-11 Score=103.26 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=88.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc--c--------------cccccccccccCC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS--D--------------NKVKIFDYMRDCS 174 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~--~--------------~~~~v~~im~~~~ 174 (505)
++++++.++.+++++|.+ ++ +||+++ + ++++|+|+.+|+.... . ...++.++|.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~i~V~d~---~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (125)
T cd04631 4 VTVPPTTPIMEAAKIMVRNGFRRLPVVDE---GTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTR-- 78 (125)
T ss_pred eEeCCCCcHHHHHHHHHHcCcccceeEeC---CCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcC--
Confidence 778999999999999988 66 899987 5 9999999999986211 1 13478899987
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++++++++++.++++.|.+.+.+.+||+|+ |+++|+||+.||++
T Consensus 79 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 79 NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 8999999999999999999999999999998 99999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=5e-11 Score=103.01 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=82.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc-c--cc-----------cccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS-D--NK-----------VKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~-~--~~-----------~~v~~im~~~~~~ 176 (505)
.++++++++.++++.|.+ ++ +||+|+ + ++++|+|+.+|+.... . .. ..+.++|.+ ++
T Consensus 4 ~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (123)
T cd04627 4 IPVPSTASLFQAIEILGSGGIHRVAVTEE---ESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTS--DV 78 (123)
T ss_pred eecCCCCCHHHHHHHHhhCCcceEEEEeC---CCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcC--Cc
Confidence 678999999999999987 65 999997 6 8999999999985211 0 00 112246777 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVE 218 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil 218 (505)
.++.+++++.++++.|.+++..++||+|+ |+++|+||++|+-
T Consensus 79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 79 ISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred eEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 99999999999999999999999999998 9999999999974
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=121.90 Aligned_cols=170 Identities=19% Similarity=0.244 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC--CHHHHHH-HHHcCCCEEEEccCCcc--eeecccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV--TMYQAQN-LIEAGVDGLRVGMGSGS--ICTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~a~~-l~~aGad~I~v~~g~g~--~~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
+.....|..+|+..+..+|.+|-+. -.++... ..++++|.|.++.+.|+ ...-.....+|+|+...+.++.+.+.
T Consensus 288 eDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~ 367 (485)
T COG0069 288 EDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLV 367 (485)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHH
Confidence 5667778888887665667776443 3344433 77899999999743332 22222356789999999999998887
Q ss_pred hcC----CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QSG----VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~~----ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
..+ +-|++|||++|+.||+||++||||.|.+||+.+-+ ||- ..+.-
T Consensus 368 ~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia--------------------~GC----------im~r~ 417 (485)
T COG0069 368 LNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVA--------------------LGC----------IMCRV 417 (485)
T ss_pred HcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHHHH--------------------hhh----------Hhhhh
Confidence 653 88999999999999999999999999999986531 110 11234
Q ss_pred ccccccccceeeeecc-------CC---chhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 425 KAKLKIAQGVVGAVAD-------KG---SVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~~-------~~---~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
|+++.+|.||.++.|. ++ .|.+++..+.+++|..|..+|.+++.||..+
T Consensus 418 CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~~~l~el~g~ 476 (485)
T COG0069 418 CHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGKRSLSELIGR 476 (485)
T ss_pred ccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhcc
Confidence 5677788888777741 22 5678888999999999999999999999854
|
|
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-11 Score=100.24 Aligned_cols=100 Identities=13% Similarity=0.226 Sum_probs=85.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce-EEEEeCCCCCCeEEEEEecccccccc------ccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY-VFVTESGTRRSRILGYVTKSDWENLS------DNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~-~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.++++++++.++++.|.+ +. .+++++ +++++|+++.+|+.... ....++.++|.+ ++.++.+++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~ 78 (112)
T cd04625 4 YTVAPETLLSEAVATMAEQDLGSLVVME---RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNP--EPIVASPDDSID 78 (112)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEee---CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCC--CCeEECCCCCHH
Confidence 778999999999999977 65 434444 78999999999986221 124579999987 889999999999
Q ss_pred HHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+++++|.+++...+||+|+|+++|+||++|+++
T Consensus 79 ~a~~~m~~~~~~~l~Vv~~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 79 EVRRLMVERHLRYLPVLDGGTLLGVISFHDVAK 111 (112)
T ss_pred HHHHHHHHcCCCeeeEEECCEEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.2e-11 Score=99.69 Aligned_cols=99 Identities=26% Similarity=0.436 Sum_probs=87.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---cccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---NKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
++++++.++.++.+.|.+ ++ +||+| +++++|+++..|++.... ...++.++|.+ ++.++.+++++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~ 78 (110)
T cd04595 5 KTVRPEATIEEARELLLRYGHTALPVVE----GGRVVGIISRRDVEKALRHGLGHAPVKDYMST--DVVTVPPDTPLSEV 78 (110)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCeeeEee----CCEEEEEEEHHHHHHHHhcccccCcHHHHhcC--CCEEECCCCcHHHH
Confidence 788999999999999987 65 89998 589999999999863221 34678999988 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+++|.+++.+.+||+++|+++|+||+.|+++
T Consensus 79 ~~~~~~~~~~~~~V~~~~~~~Gvvt~~di~~ 109 (110)
T cd04595 79 QELMVEHDIGRVPVVEDGRLVGIVTRTDLLR 109 (110)
T ss_pred HHHHHHcCCCeeEEEeCCEEEEEEEhHHhhc
Confidence 9999999999999999899999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-11 Score=99.28 Aligned_cols=99 Identities=17% Similarity=0.203 Sum_probs=86.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----ccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----DNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
+.++++.++.++++.|.+ ++ ++|+| +++++|+++.+|++... ....++.++|.+ ++.++++++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~ 77 (111)
T cd04589 4 LIVDASTSIRDAARLMREHGADALLVRD----GDPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATF--PLITVDPDDFLF 77 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEec----CCeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCC--CcEEECCCCcHH
Confidence 788999999999999987 65 88887 47899999999986321 234678899988 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++++.|.+++...+||+|+++++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~~Vv~~~~~~G~it~~dl~~ 110 (111)
T cd04589 78 NALLLMTRHRIHRVVVREGGEVVGVLEQTDLLS 110 (111)
T ss_pred HHHHHHHHhCccEEEEeeCCEEEEEEEhHHhhc
Confidence 999999999999999998899999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-11 Score=100.07 Aligned_cols=99 Identities=18% Similarity=0.252 Sum_probs=85.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEeccccccccccc---cccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLSDNK---VKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~~~~---~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
++++++.++.++++.|.+ ++ +||+++ + ++++|+++..|+....... .++.++| . ++.++.+++++.+
T Consensus 4 ~~i~~~~~i~~a~~~~~~~~~~~~~v~~~---~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~l~~ 77 (111)
T cd04590 4 VALDADDTLEEILELIAESGHSRFPVYDG---DLDNIIGVVHVKDLLRALAEGEEDLDLRDLL-R--PPLFVPESTPLDD 77 (111)
T ss_pred EEEcCCCCHHHHHHHHhhCCCceEEEECC---CCceEEEEEEHHHHHHHHHcCCCcCCHHHHh-c--CCeecCCCCcHHH
Confidence 789999999999999988 65 899987 6 8999999999986322111 3566666 4 6789999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 78 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 78 LLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred HHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 999999999999999999 99999999999875
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-11 Score=100.31 Aligned_cols=99 Identities=23% Similarity=0.368 Sum_probs=84.4
Q ss_pred eEeCCCCCHHHHHHHhcC-C-e--EEEEeCCCCCCeEEEEEecccccccc----c-cccccccccccCCCceEecCC--C
Q 010640 115 VFKAPDGCINDANDFDGS-N-Y--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRDCSSNVSVPAN--Y 183 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~-~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~~~~~~~v~~~--~ 183 (505)
++++++.++.++.+.|.+ + . +||++ +++++|+++.+|+.... . ...++.++|.+ +++++.++ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~ 77 (115)
T cd04620 4 LTVTPDTPVADAIALMSQQGDSSCVLVVE----KGRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQ 77 (115)
T ss_pred eEeCCCCcHHHHHHHHHhcCCCceEEEcC----CCcEEEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEeccccc
Confidence 788999999999999977 6 5 55555 68999999999986321 1 23578899987 88889887 6
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.++++.|.+++...+||+|+ |+++|+||++|+++
T Consensus 78 ~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 78 DIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 8999999999999999999998 99999999999976
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.4e-10 Score=109.02 Aligned_cols=171 Identities=22% Similarity=0.251 Sum_probs=122.9
Q ss_pred CccHHHHHHHHHHcC-ccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHHcC
Q 010640 246 RESDKERLEHLVKAG-VNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIEAG 310 (505)
Q Consensus 246 ~~~~~e~~~~lieaG-ad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~aG 310 (505)
.+++.+.+..+.+.+ +|+++++.++.+. +.+.+.++++++.. .+||.+|--.+ .+.|+.+.++|
T Consensus 108 ~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g 186 (310)
T COG0167 108 EEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAG 186 (310)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcC
Confidence 345667777777777 8999998876542 23444555666665 78998873323 34568888999
Q ss_pred CCEEEEccCCc--c-e-eec------ccccccCcChH--HHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 311 VDGLRVGMGSG--S-I-CTT------QEVCAVGRGQA--TAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 311 ad~I~v~~g~g--~-~-~~~------~~~~g~g~p~~--~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
+|++.+.+.-. . + ..+ ....|.+.|.+ .++..+++.++..+ +|||..|||.|++|+.+-+.+||++
T Consensus 187 ~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~ 266 (310)
T COG0167 187 ADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASA 266 (310)
T ss_pred CcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCch
Confidence 99998865221 1 1 111 12333333433 36666777776655 9999999999999999999999999
Q ss_pred EEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHH
Q 010640 377 VMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVK 456 (505)
Q Consensus 377 V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~ 456 (505)
||+||.|.. +|. .+++++..+|.
T Consensus 267 vQv~Tal~~----------------------------------------------~Gp-----------~i~~~I~~~l~ 289 (310)
T COG0167 267 VQVGTALIY----------------------------------------------KGP-----------GIVKEIIKGLA 289 (310)
T ss_pred heeeeeeee----------------------------------------------eCc-----------hHHHHHHHHHH
Confidence 999998731 121 56778999999
Q ss_pred HHhhccCCCCHHHHHHhh
Q 010640 457 QGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 457 ~~m~~~G~~~~~~l~~~~ 474 (505)
+.|..-|..+++|++..+
T Consensus 290 ~~l~~~g~~si~d~iG~~ 307 (310)
T COG0167 290 RWLEEKGFESIQDIIGSA 307 (310)
T ss_pred HHHHHcCCCCHHHHhchh
Confidence 999999999999998763
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-09 Score=113.31 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=104.7
Q ss_pred CccEEEEeCCCCCc---------hhHHHHHHHHHHh--------CCCceEEEcc--cCCHHH----HHHHHHcCCCEEEE
Q 010640 260 GVNVVVLDSSQGNS---------SFQIEMIKYAKKT--------YPELDVIGGN--VVTMYQ----AQNLIEAGVDGLRV 316 (505)
Q Consensus 260 Gad~I~i~~~~g~~---------~~~~~~i~~l~~~--------~~~~~Vi~g~--V~t~e~----a~~l~~aGad~I~v 316 (505)
.+|+++++.++.+. ....+.++.+++. ...+||++|- ..+.++ ++.+.++|+|+|++
T Consensus 216 ~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~ 295 (409)
T PLN02826 216 YADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLII 295 (409)
T ss_pred hCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 49999998876443 2234444444422 0258999974 344434 77788999999999
Q ss_pred ccCCc-c---ee---ecccccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 317 GMGSG-S---IC---TTQEVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 317 ~~g~g-~---~~---~~~~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.-- . .. ......|...+. ..++..+++..+.. ++|||++|||.++.|+.+.+.+||++||++|.|..
T Consensus 296 ~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 296 SNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred EcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 75211 0 00 001122222222 12344444444434 59999999999999999999999999999998741
Q ss_pred CCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCC
Q 010640 386 STEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGAS 465 (505)
Q Consensus 386 ~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~ 465 (505)
+| + .++.++..+|+..|...|++
T Consensus 376 ----------------------------------------------~G---------p--~~i~~I~~eL~~~l~~~G~~ 398 (409)
T PLN02826 376 ----------------------------------------------EG---------P--ALIPRIKAELAACLERDGFK 398 (409)
T ss_pred ----------------------------------------------cC---------H--HHHHHHHHHHHHHHHHcCCC
Confidence 11 1 46778999999999999999
Q ss_pred CHHHHHH
Q 010640 466 SLQSAHD 472 (505)
Q Consensus 466 ~~~~l~~ 472 (505)
+++|+..
T Consensus 399 si~e~iG 405 (409)
T PLN02826 399 SIQEAVG 405 (409)
T ss_pred CHHHHhC
Confidence 9999975
|
|
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=122.41 Aligned_cols=121 Identities=18% Similarity=0.181 Sum_probs=101.8
Q ss_pred HHHHHhhhccC-----CccccCCCeeEeCCCCCHHHHHHHhcC------C-e-EEEEeCCCCCCeEEEEEeccccccccc
Q 010640 95 ARLVVSAKSRR-----VPIFSSSLDVFKAPDGCINDANDFDGS------N-Y-VFVTESGTRRSRILGYVTKSDWENLSD 161 (505)
Q Consensus 95 ~~~v~~v~~~~-----~~~~~~p~~~~v~~~~tv~~a~~~~~~------~-~-~pVvd~~~~~g~lvGivt~~Dl~~~~~ 161 (505)
++.++++..+. ++|..++ +++++++|+.++++.+++ + + +||+|+ +++++|+|+.+|+... .
T Consensus 119 r~~i~~ll~~~e~tvg~iMt~~~--~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~~l~GvV~l~dLl~a-~ 192 (449)
T TIGR00400 119 RKAINLLLSYSDDSAGRIMTIEY--VELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SKHLKGVLSIRDLILA-K 192 (449)
T ss_pred HHHHHHHhCCCcchHHHhCcCce--EEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CCeEEEEEEHHHHhcC-C
Confidence 44555554443 4777677 899999999999999862 2 2 788887 8999999999998643 3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.+.++.++|++ +++++++++++.++++.|.+++...+||||+ |+++|+||.+|+++....
T Consensus 193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~ 253 (449)
T TIGR00400 193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS 253 (449)
T ss_pred CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence 45679999998 8999999999999999999999999999998 999999999999988753
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=98.82 Aligned_cols=100 Identities=22% Similarity=0.240 Sum_probs=88.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----c-cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
++++++.++.++++.|.+ ++ +||+++ +++++|+|+.+|++... . ...++.++|.+ ++.++.+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~ 78 (114)
T cd04613 4 VTIPEDTPLNELLDVIAHSPENNFPVVDD---DGRLVGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPEDSLE 78 (114)
T ss_pred eeeCCCCcHHHHHHHHHhCCCcceeEECC---CCCEEEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCCCCHH
Confidence 789999999999999988 66 999997 78999999999996321 1 12678999998 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD--GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+|+ ++++|++|.+|++.
T Consensus 79 ~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 79 DALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred HHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 9999999999999999986 89999999999875
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-11 Score=104.83 Aligned_cols=109 Identities=20% Similarity=0.348 Sum_probs=93.9
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------ccccccccccccCC
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------DNKVKIFDYMRDCS 174 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~v~~im~~~~ 174 (505)
...+|..+. +.++|++++.+++++|++ ++ +||++ +++++|-||.+++.... -....++++|..
T Consensus 67 a~~iM~spv--v~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e-- 138 (187)
T COG3620 67 AKTIMHSPV--VSVSPDDSISDVVNLMRDKGISQLPVIE----EDKVVGSITENDIVRALLEGMESIRSLRVREVMGE-- 138 (187)
T ss_pred HhhhccCCe--eEECchhhHHHHHHHHHHcCCccCceee----CCeeeeeecHHHHHHHHhccccchhhhhHHHHhcC--
Confidence 345777777 899999999999999999 98 99999 69999999999985221 135689999998
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
+++++.+++++.-+-.+|..++ .+.|+++|+++||||+.||++...
T Consensus 139 ~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 139 PFPTVSPDESLNVISQLLEEHP--AVLVVENGKVVGIITKADIMKLLA 184 (187)
T ss_pred CCCcCCCCCCHHHHHHHHhhCC--eEEEEeCCceEEEEeHHHHHHHHh
Confidence 9999999999999999998765 478887799999999999998753
|
|
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-11 Score=101.91 Aligned_cols=100 Identities=19% Similarity=0.284 Sum_probs=86.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--c----------------ccccccccccccC
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--S----------------DNKVKIFDYMRDC 173 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~----------------~~~~~v~~im~~~ 173 (505)
+.+++++++.++.++|.+ ++ +||+++ +++++|++|.+|+... . ....++.++|++
T Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (128)
T cd04632 4 ITVREDDSVGKAINVLREHGISRLPVVDD---NGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS- 79 (128)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCEEEEECC---CCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcC-
Confidence 678999999999999988 65 999997 7999999999998521 1 113468899988
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEee--C-CeeeeEEeechhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEK--D-GERLDVVTREDVER 219 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd--~-g~l~GiIt~~dil~ 219 (505)
++++++++.++.++++.|.+.+...+||++ + |+++|+||++|+++
T Consensus 80 -~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 80 -PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred -CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 899999999999999999999999999994 4 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=96.64 Aligned_cols=98 Identities=16% Similarity=0.258 Sum_probs=86.9
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
++++++.++.++++.|.+ +. +||++ +++++|+++.+|+... ....++.++|.+ ++.++.+++++.++++.
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d----~~~~~g~v~~~~l~~~-~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~ 77 (107)
T cd04610 5 ITVSPDNTVKDVIKLIKETGHDGFPVVD----NGKVVGIVSARDLLGK-DPDETVEEIMSK--DLVVAVPEMDIMDAARV 77 (107)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeeEeE----CCEEEEEEEHHHhhcc-CccccHHHhCCC--CCeEECCCCCHHHHHHH
Confidence 788999999999999977 55 88887 5899999999998643 234568899987 88999999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
|.+++...+||+|+ |+++|+||..|+++
T Consensus 78 ~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 78 MFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred HHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 99999999999998 99999999999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=102.37 Aligned_cols=100 Identities=17% Similarity=0.311 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cc--------------------ccc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NK--------------------VKI 166 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~--------------------~~v 166 (505)
+++++++++.++.+.|.+ ++ +||+|+ +++++|+++..|+.... . .. .++
T Consensus 4 ~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (132)
T cd04636 4 ITVKKDDTLRDVVEILLTGKISGVPVVDN---EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV 80 (132)
T ss_pred eEeCCCCcHHHHHHHHHHhCCCccceECC---CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence 789999999999999987 65 999997 79999999999985211 1 11 178
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 167 FDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 167 ~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++|.+ ++.++.+++++.+++++|.+.+.+.+||+|+|+++|+||++|+++
T Consensus 81 ~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~iGvit~~dl~~ 131 (132)
T cd04636 81 EEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDDGKLVGIISRGDIIR 131 (132)
T ss_pred HHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEECCEEEEEEEHHHhhc
Confidence 889987 899999999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=97.27 Aligned_cols=99 Identities=20% Similarity=0.366 Sum_probs=87.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc--cc---ccccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN--LS---DNKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~--~~---~~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.+++++.++.++.+.|.+ ++ +||++ +++++|+++.+|+.. .. ....++.++|.. +++++++++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~i~V~~----~~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~ 77 (111)
T cd04800 4 VTCSPDTTIREAARLMTEHRVSSLLVVD----DGRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPDATVF 77 (111)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeEEEEE----CCEEEEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCCCcHH
Confidence 788999999999999977 65 89998 589999999999862 11 123578899988 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++++.|.+++...+||+++|+++|++|++|+++
T Consensus 78 ~~~~~~~~~~~~~~~Vv~~~~~~Giit~~di~~ 110 (111)
T cd04800 78 EALLLMLERGIHHLPVVDDGRLVGVISATDLLR 110 (111)
T ss_pred HHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhc
Confidence 999999999999999998899999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-11 Score=123.09 Aligned_cols=112 Identities=21% Similarity=0.246 Sum_probs=100.0
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc---c--cccccccccccccCCC
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN---L--SDNKVKIFDYMRDCSS 175 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~---~--~~~~~~v~~im~~~~~ 175 (505)
..+.++.+| +++++..++.+|.+.|.+ |. +.++++ ++++.||||.+|++. . .+...+|.++|+. +
T Consensus 151 v~~~~~~~~--~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p 223 (610)
T COG2905 151 VGEVKTLPA--VTVSPQASIQDAARKMKDEGVSSLVVLDD---SGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS--P 223 (610)
T ss_pred HHHHhcCCC--cccCccCcHHHHHHHHHhcCCCeEEEEcC---CCCccceeehHHHHHHHHhcCCCcccchhhhhcc--C
Confidence 334566788 999999999999999999 87 777777 899999999999972 2 2457799999999 9
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
++++..++-+.+|+-+|.+++++++||+++|+++|+||.+||+....
T Consensus 224 ~~svd~~~~~feAml~m~r~~I~hl~V~e~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 224 VISVDRGDFLFEAMLMMLRNRIKHLPVTEDGQPLGILTLTDILRLFS 270 (610)
T ss_pred ceeecCcchHHHHHHHHHHhCCceeeeecCCeeeEEeeHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999865
|
|
| >COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=106.38 Aligned_cols=166 Identities=41% Similarity=0.677 Sum_probs=138.9
Q ss_pred HHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC
Q 010640 279 MIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG 358 (505)
Q Consensus 279 ~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G 358 (505)
.+.+++...+. +..++|.+...+..+..+| +.+.++.++| .+.++|++++..++...++.. ++++.+|
T Consensus 4 ~~~~~k~~~~~--ltfddVll~p~~s~v~p~~-~~vkt~i~~~--------i~l~iP~vSA~MDtVtea~mA-i~ma~~G 71 (170)
T COG0516 4 QVLKIKKARPG--LTFDDVLLLPAASDVAPAG-VDVKTGLGPG--------IGVNIPQVSAAMDTVTEARMA-IAMARDG 71 (170)
T ss_pred HHHHHHHhCCC--ceeccCcchhhHHhhccCC-CeeEecccCC--------cccCchHHHHHHHHHHHHHHh-HHHHHcC
Confidence 44556666544 7789999999999999999 8888877654 456789999999988877765 9999999
Q ss_pred CCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeee
Q 010640 359 GISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAV 438 (505)
Q Consensus 359 GI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (505)
||. |+.|.++. .|++.+.... + ++|+|..+|. +||. ....++|+++..
T Consensus 72 GIG---------------Vih~nm~~--~e~~~~v~~v-----~--~~~~~~~~~~-----~~~~---~~~~~~~~~~~~ 119 (170)
T COG0516 72 GIG---------------VMHGNMLA--EESPGEYLYQ-----K--RGMGSIDAMQ-----RYFS---SVLVAQGVSGVV 119 (170)
T ss_pred CeE---------------EEeccccH--hhCCCceEEE-----E--ecCCCccccc-----cccc---cccceecccccc
Confidence 992 99999998 8888887654 2 8999988764 7777 345677877755
Q ss_pred ccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCcc
Q 010640 439 ADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGL 497 (505)
Q Consensus 439 ~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~ 497 (505)
+++++...+..+...+++.|.|+|++++.+++.+ .+|+.++.+ |+++|++
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~ 169 (170)
T COG0516 120 -DKGSIKKFIPYLYGGLQSSCQYIGCRSLTLLKEN-----VRFEFRTAS---EGGVHNL 169 (170)
T ss_pred -cccchhhhhHHHHHHHHHHhhhcccHhHHHHHhc-----ccEEEEecc---ccCCccc
Confidence 9999999999999999999999999999999987 699999999 9999986
|
|
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-10 Score=97.17 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---c-cccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---D-NKVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---~-~~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
.+++++.++.++++.|.+ ++ +||++ +++++|+++.+|+.... . ...++.++|.+ +++++++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~ 77 (111)
T cd04611 4 LTCPPDTSLAEAASRMRERRISSIVVVD----DGRPLGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADTSLYD 77 (111)
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEee----CCEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCCCHHH
Confidence 678999999999999987 65 88887 58999999999986321 1 35678999988 8999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 78 ~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 78 ARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred HHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 999999999999999998 99999999999875
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.5e-10 Score=111.15 Aligned_cols=171 Identities=16% Similarity=0.145 Sum_probs=113.8
Q ss_pred CCccHHHHHHHHHHcC-ccEEEEeCCCCC----------chhHHHHHHHHHHhCCCceEEEc---ccCCHHHHHHHHH--
Q 010640 245 TRESDKERLEHLVKAG-VNVVVLDSSQGN----------SSFQIEMIKYAKKTYPELDVIGG---NVVTMYQAQNLIE-- 308 (505)
Q Consensus 245 ~~~~~~e~~~~lieaG-ad~I~i~~~~g~----------~~~~~~~i~~l~~~~~~~~Vi~g---~V~t~e~a~~l~~-- 308 (505)
+.+++.+.++.+.++| +|+++++.++.+ .....+.++.+++.. ++||++| ++...+.++.+..
T Consensus 103 ~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~ 181 (310)
T PRK02506 103 SPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFN 181 (310)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhC
Confidence 3456677777777777 999999887532 234566777777765 6898886 3333444444443
Q ss_pred -cCCCEEEEccC--Ccc-e-------ee--cccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHH
Q 010640 309 -AGVDGLRVGMG--SGS-I-------CT--TQEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 309 -aGad~I~v~~g--~g~-~-------~~--~~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~ 371 (505)
.|+++|..-+. .+- + .. .....|...|.+ .++..+++..+.. ++|||+.|||.+++|+.+.+.
T Consensus 182 ~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~ 261 (310)
T PRK02506 182 KFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL 261 (310)
T ss_pred cCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence 45555544321 111 1 00 011112222322 2455555555555 599999999999999999999
Q ss_pred hCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHH
Q 010640 372 LGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYT 451 (505)
Q Consensus 372 lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 451 (505)
+||++||++|.++. +| -.++..+
T Consensus 262 aGA~~Vqv~ta~~~----------------------------------------------~g-----------p~~~~~i 284 (310)
T PRK02506 262 CGASMVQVGTALHK----------------------------------------------EG-----------PAVFERL 284 (310)
T ss_pred cCCCHHhhhHHHHH----------------------------------------------hC-----------hHHHHHH
Confidence 99999999998741 11 1567789
Q ss_pred HHHHHHHhhccCCCCHHHHHHh
Q 010640 452 MQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 452 ~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
..+|+..|...|.++++|++.+
T Consensus 285 ~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 285 TKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred HHHHHHHHHHhCCCCHHHHhCh
Confidence 9999999999999999999865
|
|
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=98.01 Aligned_cols=99 Identities=11% Similarity=0.200 Sum_probs=86.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc-c--c--cc-ccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN-L--S--DN-KVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~-~--~--~~-~~~v~~im~~~~~~~~v~~~~~l 185 (505)
++++++.++.++.+.|.+ +. +||++ +++++|+|+.+|+.. . . .. ..++.++|.+ ++.++.+++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~--~~~~v~~~~~l 77 (113)
T cd04587 4 ATVSPTTTVQEAAKLMREKRVSCVLVMD----GNKLVGIFTSKDIALRVVAQGLDPESTLVERVMTP--NPVCATSDTPV 77 (113)
T ss_pred eEeCCCCCHHHHHHHHHHcCCCeEEEEE----CCEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCC--CCeEEcCCCCH
Confidence 778999999999999977 54 88888 589999999999852 1 1 11 2578899987 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++.|.+++.+++||+++ ++++|+||..|++.
T Consensus 78 ~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 78 LEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred HHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 99999999999999999998 99999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=97.12 Aligned_cols=99 Identities=20% Similarity=0.253 Sum_probs=86.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccccc----ccccccccccCCCceEecCCCCHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDN----KVKIFDYMRDCSSNVSVPANYDLGQ 187 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~----~~~v~~im~~~~~~~~v~~~~~l~~ 187 (505)
+.++++.++.++.+.|.+ ++ +||++ +++++|+++.+|+...... ..++.++|.+ ++.++.+++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 77 (111)
T cd04612 4 VTVPVDLTVDEVLALMFGERHRGYPVVD----DGRLVGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRD 77 (111)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCcceEee----CCeEEEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHH
Confidence 789999999999999987 65 89998 5899999999998632221 1257788988 9999999999999
Q ss_pred HHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.|.+++...+||+|+ |+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 78 ALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred HHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 999999999999999998 99999999999875
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=2e-10 Score=96.81 Aligned_cols=99 Identities=20% Similarity=0.346 Sum_probs=87.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---ccccccccccccCCCceEecCCCCHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---DNKVKIFDYMRDCSSNVSVPANYDLGQI 188 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---~~~~~v~~im~~~~~~~~v~~~~~l~~a 188 (505)
++++++.++.++.+.|.+ ++ +||++ +++++|+++.+|+.... ....++.++|.+ ++.+++++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~v~~~~l~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~ 77 (110)
T cd04588 4 ITLNPNATLREAARLFNTHHIHGAPVVD----DGKLVGIVTLSDIAHAIARGLELAKVKDVMTK--DVITIDEDEQLYDA 77 (110)
T ss_pred EEECCCCCHHHHHHHHHHcCCCEEEEee----CCEEEEEEEHHHHHHHHhccccccCHHHHhcC--CceEECCCCCHHHH
Confidence 788999999999999987 66 89988 58999999999986322 122578899987 89999999999999
Q ss_pred HHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 189 DEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.|.+.+.+.+||+++ |+++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 78 IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 99999999999999998 99999999999875
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-10 Score=98.51 Aligned_cols=99 Identities=21% Similarity=0.361 Sum_probs=87.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---------------~~~~v~~im~~~~~~ 176 (505)
.+++++.++.++.+.|.+ ++ +||+| +++++|+++..|+..... ...++.++|.+ ++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (122)
T cd04585 4 ITVTPDTSLMEALKLMKENSIRRLPVVD----RGKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTR--DP 77 (122)
T ss_pred EEeCCCCcHHHHHHHHHhCCcceeeEec----CCeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccC--CC
Confidence 789999999999999988 65 99998 589999999999863211 12468889988 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++++++.++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 78 ITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 99999999999999999999999999998 99999999999976
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-10 Score=96.09 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=86.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---c---ccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---S---DNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~---~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
++++++.++.++.+.|.+ ++ +||+++ ++++|+++..|+... . ....++.++|.+ ++.++.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l 77 (112)
T cd04802 4 ITVDPDTTVYEAANIMTENNIGRLIVVDN----EKPVGIITERDLVKKVVSRNLKPREVPVGEVMST--PLITIDPNASL 77 (112)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEEEC----CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCC--CcEEECCCCCH
Confidence 778999999999999987 65 899985 499999999998631 1 134578899987 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++++.|.+++...+||+|+++++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~di~~ 111 (112)
T cd04802 78 NEAAKLMAKHGIKRLPVVDDDELVGIVTTTDIVM 111 (112)
T ss_pred HHHHHHHHHcCCCeeEEeeCCEEEEEEEhhhhhc
Confidence 9999999999999999998889999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-10 Score=114.90 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=100.8
Q ss_pred HHHHHHHhhh-----ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---
Q 010640 93 DQARLVVSAK-----SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--- 161 (505)
Q Consensus 93 ~~~~~v~~v~-----~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--- 161 (505)
.+...+..+. .+.++|+...+.+++++++++.++.+.+.+ ++ +||++++ .++++|+|+.+|+.....
T Consensus 53 ~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~--~d~iiGiv~~kDll~~~~~~~ 130 (292)
T PRK15094 53 DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KDHIEGILMAKDLLPFMRSDA 130 (292)
T ss_pred HHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC--CCcEEEEEEHHHHHhHhhccC
Confidence 3445555553 344577763233899999999999999988 76 9999861 378999999999963211
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
....+.++|++ +.++++++++.++++.|++++.+.+||+|+ |.++|+||++||++.+..
T Consensus 131 ~~~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 131 EAFSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred CcCCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhC
Confidence 23347888874 558999999999999999999999999999 999999999999998754
|
|
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=96.41 Aligned_cols=99 Identities=24% Similarity=0.349 Sum_probs=86.2
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-----ccccc-ccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-----SDNKV-KIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-----~~~~~-~v~~im~~~~~~~~v~~~~~l 185 (505)
++++++.++.++.+.|.+ ++ +||++ +++++|+++..|+... ..... ++.++|.+ .+.++.+++++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~ 77 (113)
T cd04622 4 VTVSPDDTIREAARLMREHDVGALPVCE----NDRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTR--GVVTVTEDDDV 77 (113)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEee----CCEEEEEEEhHHHHHHHhhccCCcccCCHHHhccC--CccEECCCCCH
Confidence 789999999999999987 65 88888 5899999999998521 11223 48999988 89999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++++.|.+.+...+||+|+ |+++|+||+.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 78 DEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred HHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 99999999999999999998 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=96.49 Aligned_cols=97 Identities=19% Similarity=0.357 Sum_probs=83.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
..++++.++.++.+.+.+ ++ +||++++..+++++|+|+.+|+...... +|.+ ++.++++++++.++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------~m~~--~~~~v~~~~~l~~~~~~ 76 (105)
T cd04591 5 VLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------YIDP--SPFTVSPRTSLEKVHQL 76 (105)
T ss_pred EEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------hccC--CCceECCCCcHHHHHHH
Confidence 678999999999999988 65 9999851112899999999998633211 7887 89999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+++.+.+||+++|+++|+||++|+++
T Consensus 77 ~~~~~~~~~pVv~~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 77 FRKLGLRHLLVVDEGRLVGIITRKDLLK 104 (105)
T ss_pred HHHcCCCEEEEEECCeEEEEEEhhhhhc
Confidence 9999999999997799999999999876
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-10 Score=97.71 Aligned_cols=99 Identities=19% Similarity=0.357 Sum_probs=86.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---------------~~~~v~~im~~~~~~ 176 (505)
+.+.++.++.++.+.|.+ ++ +||++ +++++|+++..|+..... ...++.++|.. ++
T Consensus 4 ~~i~~~~~~~~~~~~l~~~~~~~i~V~~----~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (121)
T cd04633 4 ITVSPDDRVSHARRLMLDHDISRLPVIE----GGKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTR--PV 77 (121)
T ss_pred EEECCCCcHHHHHHHHHHcCCCeeEEEE----CCEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccC--Cc
Confidence 788999999999999987 65 89998 589999999999863211 13478889987 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
.++.+++++.+++++|.+.+...+||+|+|+++|+||+.|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~Gvi~~~dl~~ 120 (121)
T cd04633 78 ITIEPDTSVSDVASLMLENNIGGLPVVDDGKLVGIVTRTDILR 120 (121)
T ss_pred eEECCCCcHHHHHHHHHHcCCCcccEEECCEEEEEEEHHHhhc
Confidence 9999999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=96.69 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=87.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----c-cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.+++++.++.++.+.+.+ ++ +||+++ +++++|+++.+++.... . ...++.++|.+ +..++.+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~ 79 (114)
T cd04604 5 PLVSPDTSLKDALLEMSRKGLGMTAVVDE---DGRLVGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPDALAA 79 (114)
T ss_pred cccCCCCcHHHHHHHHHhcCccEEEEEcC---CCCEEEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCCCcHH
Confidence 678899999999999877 65 899987 78999999999976221 1 23479999998 889999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+++ ++++|+||+.||++
T Consensus 80 ~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 80 EALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred HHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999999999999997 99999999999975
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-10 Score=98.22 Aligned_cols=99 Identities=13% Similarity=0.318 Sum_probs=87.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc---------------cccccccccccCCCc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD---------------NKVKIFDYMRDCSSN 176 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~---------------~~~~v~~im~~~~~~ 176 (505)
++++++.++.++.+.|.+ ++ +||+| +++++|+++.+|+..... ...++.++|.+ ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (122)
T cd04637 4 VTVEMDDRLEEVREIFEKHKFHHLLVVE----DNELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTR--DP 77 (122)
T ss_pred eEeCCCCCHHHHHHHHHhCCCCEEEEEe----CCeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcC--CC
Confidence 789999999999999988 76 99998 589999999999853110 13468899988 89
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.+++++.++++.|.+++...+||+|+ ++++|++|+.|+++
T Consensus 78 ~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 78 ITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred eeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 99999999999999999999999999998 99999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-10 Score=117.95 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=102.5
Q ss_pred HHHHHHHhhh-----ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-ccc
Q 010640 93 DQARLVVSAK-----SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-DNK 163 (505)
Q Consensus 93 ~~~~~v~~v~-----~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~~~ 163 (505)
++.++++.+. ...++|++..+.++++.+++++++++.+.+ ++ +||++++ .++++|+|+.+|+.... ...
T Consensus 177 ~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~--~d~ivGiv~~kDll~~~~~~~ 254 (408)
T TIGR03520 177 EEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET--IDNITGVLYIKDLLPHLNKKN 254 (408)
T ss_pred HHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC--CCceEEEEEHHHHHhHhccCC
Confidence 3445555553 344688874444899999999999999999 88 9999863 47899999999996322 223
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.++.++|+ ++.++++++++.++++.|++++.+..+|+|+ |.++|+||.+||++..-
T Consensus 255 ~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeiv 311 (408)
T TIGR03520 255 FDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIV 311 (408)
T ss_pred CCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 45788886 5789999999999999999999999999999 99999999999999874
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-10 Score=96.72 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=88.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------------ccccccccccccCCCce
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------------DNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------------~~~~~v~~im~~~~~~~ 177 (505)
.+++++.++.++.+.|.+ ++ +||+|+ +++++|+++.+|+.... ....++.++|.+ +++
T Consensus 4 ~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 78 (121)
T cd04584 4 VTITPTTTIAEALELMREHKIRHLPVVDE---EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTK--DVI 78 (121)
T ss_pred EEECCCCCHHHHHHHHHHcCCCcccEECC---CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhC--CCe
Confidence 788999999999999987 65 999997 79999999999985211 123568899988 899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++.+++++.++++.|.+.+...+||+|+|+++|++|.+|+++
T Consensus 79 ~i~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~Gvv~~~di~~ 120 (121)
T cd04584 79 TVHPLDTVEEAALLMREHRIGCLPVVEDGRLVGIITETDLLR 120 (121)
T ss_pred EECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHhhc
Confidence 999999999999999999999999998899999999999876
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-10 Score=94.69 Aligned_cols=101 Identities=18% Similarity=0.279 Sum_probs=88.4
Q ss_pred cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--cc-cc-ccccccccCCCceEecCC
Q 010640 110 SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--DN-KV-KIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 110 ~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~~-~~-~v~~im~~~~~~~~v~~~ 182 (505)
.++ +++.++.++.++...|.+ ++ +||++ .++++|++|.+|+.... .. .. ++.++|++ +++++.++
T Consensus 7 ~~~--~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~~l~Giit~~di~~~~~~~~~~~~~v~~v~~~--~~~~~~~~ 78 (117)
T COG0517 7 KDV--ITVKPDTSVRDALLLMSENGVSAVPVVD----DGKLVGIITERDILRALAAGGKRLLPVKEVMTK--PVVTVDPD 78 (117)
T ss_pred CCC--EEECCCCcHHHHHHHHHHcCCCEEEEee----CCEEEEEEEHHHHHHHHhccCCccccHHHhccC--CcEEECCC
Confidence 466 899999999999999999 76 88887 45899999999997432 11 22 58999998 89999999
Q ss_pred CCHHHHHHHHHH-CCCCeeEEeeC-C-eeeeEEeechhh
Q 010640 183 YDLGQIDEVLEK-NDVDFVVLEKD-G-ERLDVVTREDVE 218 (505)
Q Consensus 183 ~~l~~a~~~l~~-~~i~~lpVvd~-g-~l~GiIt~~dil 218 (505)
.++.++.+.|.+ ++++.+||+++ + +++|++|+.|++
T Consensus 79 ~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 79 TPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred CCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 999999999999 79999999999 6 999999999974
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-09 Score=111.23 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=117.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC--------------chhHHHHHHHHHHhCCCceEEEccc---CC-HHHHHHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN--------------SSFQIEMIKYAKKTYPELDVIGGNV---VT-MYQAQNLI 307 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~--------------~~~~~~~i~~l~~~~~~~~Vi~g~V---~t-~e~a~~l~ 307 (505)
.+++.+.++.+.+.|+|++.++.++.+ ...+.+.++.+++.. ++||++|-- .+ .+.++.+.
T Consensus 112 ~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~ 190 (420)
T PRK08318 112 EEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAK 190 (420)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHH
Confidence 345677777777889999999876533 134566677777765 789998732 22 36678889
Q ss_pred HcCCCEEEEccCCcc---e---------ee--cccccccCcChH--HHHHHHHHHHhhc---CCcEEecCCCCCHHHHHH
Q 010640 308 EAGVDGLRVGMGSGS---I---------CT--TQEVCAVGRGQA--TAVYKVSSIAAQS---GVPVIADGGISNSGHIVK 368 (505)
Q Consensus 308 ~aGad~I~v~~g~g~---~---------~~--~~~~~g~g~p~~--~~l~~v~~~~~~~---~ipvIa~GGI~~~~di~k 368 (505)
++|+|+|.+.+.-.+ + .. .....|...|.+ .++..+++..+.. ++|||+.|||.++.|+.+
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e 270 (420)
T PRK08318 191 RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAE 270 (420)
T ss_pred HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHH
Confidence 999999986432111 0 00 011222222332 1344555554443 699999999999999999
Q ss_pred HHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHH
Q 010640 369 ALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFI 448 (505)
Q Consensus 369 al~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 448 (505)
.+.+||++||+||.+.. +| + .++
T Consensus 271 ~i~aGA~~Vqi~ta~~~----------------------------------------------~g---------p--~ii 293 (420)
T PRK08318 271 FILLGAGTVQVCTAAMQ----------------------------------------------YG---------F--RIV 293 (420)
T ss_pred HHHhCCChheeeeeecc----------------------------------------------CC---------c--hhH
Confidence 99999999999998741 11 1 456
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 449 PYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 449 ~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.++..+|+..|...|..++.++...
T Consensus 294 ~~I~~~L~~~l~~~g~~si~e~iG~ 318 (420)
T PRK08318 294 EDMISGLSHYMDEKGFASLEDMVGL 318 (420)
T ss_pred HHHHHHHHHHHHHcCcchHHHHhcc
Confidence 6799999999999999999998854
|
|
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-10 Score=92.59 Aligned_cols=99 Identities=19% Similarity=0.297 Sum_probs=86.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
.++.++.++.++++.|.+ ++ +||+++ +++++|+++.+++.... ...++.++|.. ++.++.+++++.++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~g~v~~~~l~~~~-~~~~~~~~~~~--~~~~v~~~~~l~~~~~~ 77 (106)
T cd04638 4 VYVTLPGTRDDVLELLKEYKVSGVPVVKK---SGELVGIITRKDLLRNP-EEEQLALLMTR--DPPTVSPDDDVKEAAKL 77 (106)
T ss_pred EEECCCCCHHHHHHHHHHcCCCeEEEEcC---CCcEEEEEEHHHHHhcc-ccchHHHHhcC--CCceECCCCCHHHHHHH
Confidence 678889999999999987 65 899987 79999999999986332 23467888887 89999999999999999
Q ss_pred HHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 192 LEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 192 l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
|.+.+.+.+||+|+|+++|+||.+|+++
T Consensus 78 ~~~~~~~~~~Vvd~~~~~G~it~~d~~~ 105 (106)
T cd04638 78 MVENNIRRVPVVDDGKLVGIVTVADIVR 105 (106)
T ss_pred HHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 9999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-10 Score=127.29 Aligned_cols=167 Identities=18% Similarity=0.161 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC---CHHHHHHHHHcCCCEEEEccCCcce--eecccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV---TMYQAQNLIEAGVDGLRVGMGSGSI--CTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~---t~e~a~~l~~aGad~I~v~~g~g~~--~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
+.+...+.++|...|..||.+|-+. -..-+.-..++|+|+|.++.+.|+. .........|.|....|.++.+.+.
T Consensus 981 eDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~ 1060 (1485)
T PRK11750 981 EDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALV 1060 (1485)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHH
Confidence 4566778888888777888887442 1223334667999999997544332 2222345668899889999888776
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++.++++||++|+.|++||++||||.|.+||.++-+.-|- .+-.
T Consensus 1061 ~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi------------------------------~~r~ 1110 (1485)
T PRK11750 1061 ANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCK------------------------------YLRI 1110 (1485)
T ss_pred hcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCH------------------------------HHHh
Confidence 55 3899999999999999999999999999999987543331 0112
Q ss_pred ccccccccceeeeec------cC---CchhhHHHHHHHHHHHHhhccCCCCHHHH
Q 010640 425 KAKLKIAQGVVGAVA------DK---GSVLKFIPYTMQAVKQGFQDLGASSLQSA 470 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~------~~---~~~~~~~~~l~~~l~~~m~~~G~~~~~~l 470 (505)
|+++.+|.|+.++.+ +. .-|.+++..+..+||..|..+|.+++.||
T Consensus 1111 Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750 1111 CHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred hcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHh
Confidence 455567777766553 11 25778888999999999999999999999
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=106.90 Aligned_cols=138 Identities=22% Similarity=0.253 Sum_probs=93.5
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCc--------------hhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNS--------------SFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLI 307 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~--------------~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~ 307 (505)
.+++.+.++.+.+.|+|++.++.++.+. ..+.+.++.+++.. ++||.+|--.. .+.++.+.
T Consensus 112 ~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 112 KEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHH
Confidence 3456677777777799999998765332 34566777777765 78999973322 36778899
Q ss_pred HcCCCEEEEccCCcc---e--ee--------cc-cccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHH
Q 010640 308 EAGVDGLRVGMGSGS---I--CT--------TQ-EVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 308 ~aGad~I~v~~g~g~---~--~~--------~~-~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~ka 369 (505)
++|+|+|.+.+.-.. + .. .+ ...|...|. ..++..+.+..+.. ++|||+.|||.+++|+.++
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~ 270 (299)
T cd02940 191 EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEF 270 (299)
T ss_pred HcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHH
Confidence 999999987642211 0 00 01 111221121 12344445555555 6999999999999999999
Q ss_pred HHhCCCEEEeccccc
Q 010640 370 LVLGASTVMMGSFLA 384 (505)
Q Consensus 370 l~lGA~~V~~G~~f~ 384 (505)
+.+||++||+||.+.
T Consensus 271 l~aGA~~V~i~ta~~ 285 (299)
T cd02940 271 LLLGASVVQVCTAVM 285 (299)
T ss_pred HHcCCChheEceeec
Confidence 999999999999874
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-10 Score=110.61 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=91.5
Q ss_pred hhccCCccccC-CCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----cccccccccccc
Q 010640 101 AKSRRVPIFSS-SLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----DNKVKIFDYMRD 172 (505)
Q Consensus 101 v~~~~~~~~~~-p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~~~~~v~~im~~ 172 (505)
+.+..++|..+ + .++++++++.++++.|.+ ++ +||+|+ +++++|+|+.+|++... ....++.++|.+
T Consensus 154 ~~~v~~im~~~~~--~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~ 228 (268)
T TIGR00393 154 LVKVKDLMQTTDL--PLIAPTTSFKDALLEMSEKRLGSAIVCDE---NNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTL 228 (268)
T ss_pred hhhHHHHhCCCCC--CcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCC
Confidence 34555677667 6 889999999999999987 65 899997 89999999999986321 235679999998
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEe
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVT 213 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt 213 (505)
+++++.+++++.+++++|.+++...+||+|+ |+++|+|+
T Consensus 229 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 229 --GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 8999999999999999999999999999998 99999984
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-10 Score=115.49 Aligned_cols=123 Identities=21% Similarity=0.252 Sum_probs=104.4
Q ss_pred HHHHHHHhhhccCC-----ccccCCCeeEeCCCCCHHHHHHHhcC--C-----e-EEEEeCCCCCCeEEEEEeccccccc
Q 010640 93 DQARLVVSAKSRRV-----PIFSSSLDVFKAPDGCINDANDFDGS--N-----Y-VFVTESGTRRSRILGYVTKSDWENL 159 (505)
Q Consensus 93 ~~~~~v~~v~~~~~-----~~~~~p~~~~v~~~~tv~~a~~~~~~--~-----~-~pVvd~~~~~g~lvGivt~~Dl~~~ 159 (505)
+++..+++...+.+ .|+.+. ++++++.|+++++..+++ + + ++|+|+ +++++|+++.+++...
T Consensus 118 ~~r~~v~~~l~y~e~taG~~Mt~e~--v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~~L~Gvvsl~~Ll~a 192 (451)
T COG2239 118 EERARVRQLLSYPEDTAGRIMTTEF--VTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KGKLLGVVSLRDLLTA 192 (451)
T ss_pred HHHHHHHHhcCCChhhhhccceeee--EEeccCcCHHHHHHHHHHhcccccccceEEEECC---ccceEEEeeHHHHhcC
Confidence 33455555555543 566666 999999999999999874 1 2 899998 8999999999999643
Q ss_pred cccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 160 SDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 160 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+.+.++.++|.+ .++++.++++.+++.++++++++-.+||||+ ++++|+||..|++.....
T Consensus 193 -~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 193 -EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred -CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 456789999999 8999999999999999999999999999999 999999999999987753
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-09 Score=101.19 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC-c--hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN-S--SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~-~--~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
.+.++.+.++|+|++.++..... + ....+.++.+++. +++++++ ++.+.++++.+.++|+|++.+..++ .. +
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~-~v~t~ee~~~a~~~G~d~i~~~~~g-~t--~ 152 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMA-DCSTLEEGLAAQKLGFDFIGTTLSG-YT--E 152 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEE-eCCCHHHHHHHHHcCCCEEEcCCce-ee--c
Confidence 35688899999999988775432 1 4556778888774 4788876 7889999999999999999764321 11 1
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. ......+....+.++++. .++||++.|||.++.|+.+++++||++|++|+.|..
T Consensus 153 ~-~~~~~~~~~~~i~~i~~~---~~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 153 E-TKKPEEPDFALLKELLKA---VGCPVIAEGRINTPEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred C-CCCCCCcCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence 0 011122344555555443 469999999999999999999999999999999864
|
|
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.9e-10 Score=92.57 Aligned_cols=97 Identities=20% Similarity=0.345 Sum_probs=82.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--c---cccccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--D---NKVKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~---~~~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
++++++.++.++.+.|.+ ++ +||++ +++++|++|.+|+.... . ...++.++|.+ ++.++++++++.
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~ 77 (110)
T cd04609 4 VSVAPDDTVSQAIERMREYGVSQLPVVD----DGRVVGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPDAPIE 77 (110)
T ss_pred EEECCCCcHHHHHHHHHHcCCceeeEee----CCeeEEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCCCcHH
Confidence 788999999999999987 65 89998 58999999999986321 1 13578899987 889999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++++|.+ . ..+||+++ |+++|+||++|+++
T Consensus 78 ~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 78 ELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred HHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 99999988 3 34899988 99999999999875
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-08 Score=109.75 Aligned_cols=195 Identities=19% Similarity=0.202 Sum_probs=127.3
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCC-CCcceEEEe
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGP-DGKWMVGAA 242 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~-~~~l~v~a~ 242 (505)
.+.++|.+ +++++++++++.+++++|.+++...+||+|+ ++++|+||.+|+......... ..+. ..+-.+.+.
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~---V~dim~~~~~v~v~ 162 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQP---VSEVMTKERLVTVP 162 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCc---HHHHcCCCCCEEEC
Confidence 35677887 9999999999999999999999999999999 999999999999754322111 1111 101112222
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHH---HHHHHHHHhC----CCceEEEccc-----CCHHHHHHHHHcC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQI---EMIKYAKKTY----PELDVIGGNV-----VTMYQAQNLIEAG 310 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~---~~i~~l~~~~----~~~~Vi~g~V-----~t~e~a~~l~~aG 310 (505)
. .....+.++.+.+.+.+.+.+...+|...+++ +.++.+.... ....+.++.. .+.+.++.+.++|
T Consensus 163 ~--~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~ag 240 (486)
T PRK05567 163 E--GTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALVEAG 240 (486)
T ss_pred C--CCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHHHhC
Confidence 2 23356777888888988887765555432222 2222211100 0113333322 2468899999999
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+|.+.+... .++....+..+..++ .+. ++|||+ |++.|..++..+..+||++|.+|
T Consensus 241 vdvivvD~a----------~g~~~~vl~~i~~i~---~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 241 VDVLVVDTA----------HGHSEGVLDRVREIK---AKYPDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred CCEEEEECC----------CCcchhHHHHHHHHH---hhCCCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 998866411 112122334444443 334 689998 99999999999999999999875
|
|
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=96.87 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=86.3
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---c---------------------------
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---D--------------------------- 161 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---~--------------------------- 161 (505)
+++++++++.++.+.|.+ ++ +||++ +++++|+++.+|+.... .
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~Vvd----~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
T cd04634 4 ITCNADDTISDAARLLRENKISGAPVLD----GGKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET 79 (143)
T ss_pred EEecCCCCHHHHHHHHHHcCCCcceEeE----CCeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence 789999999999999988 76 99998 48999999999985211 0
Q ss_pred -------cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 162 -------NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 162 -------~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
...++.++|.+ ++.++++++++.++++.|.+.+...+||+++|+++|+||.+|+++
T Consensus 80 ~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~~~~~Gvvt~~dl~~ 142 (143)
T cd04634 80 KRALTDAGKMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVEDGRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHHhcCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHhhc
Confidence 23467788988 899999999999999999999999999998899999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=90.44 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=86.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc--cc---cccccccccCCCceEecCCCCHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--NK---VKIFDYMRDCSSNVSVPANYDLG 186 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--~~---~~v~~im~~~~~~~~v~~~~~l~ 186 (505)
.+++++.++.++.+.|.+ ++ +||+++ +++++|+++.+|+..... .. ..+.++|.. ++.++++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (113)
T cd02205 4 VTVSPDDTVAEALRLMLEHGISGLPVVDD---DGRLVGIVTERDLLRALAEGGLDPLVTVGDVMTR--DVVTVSPDTSLE 78 (113)
T ss_pred eEecCCCCHHHHHHHHHhcCCceEEEECC---CCCEEEEEeHHHHHHHHHhccCCccccHHHHhcC--CceecCCCcCHH
Confidence 678999999999999987 55 999997 799999999999863221 11 126678887 899999999999
Q ss_pred HHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 187 QIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 187 ~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++++.|.+.+...+||+|+ ++++|++|++|+++
T Consensus 79 ~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 79 EAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 9999999999999999999 99999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.1e-09 Score=103.74 Aligned_cols=139 Identities=22% Similarity=0.272 Sum_probs=95.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEc--ccCC----HHHHHHHHHc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGG--NVVT----MYQAQNLIEA 309 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g--~V~t----~e~a~~l~~a 309 (505)
.++..+.++.+.+.|+|++.++.++.+. ....+.++.+++.+ +.||++| ...+ .+.++.+.++
T Consensus 110 ~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~ 188 (289)
T cd02810 110 KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERA 188 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 3567778888888899999998765321 34567788888876 7888886 3334 5667888999
Q ss_pred CCCEEEEccCCcc-eeec--------ccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 310 GVDGLRVGMGSGS-ICTT--------QEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 310 Gad~I~v~~g~g~-~~~~--------~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
|+|+|.+.++-.. .... ....+...+.+ ..+..+.+..+.. ++|||+.|||.++.|+.+++.+|||+
T Consensus 189 Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~ 268 (289)
T cd02810 189 GADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASA 268 (289)
T ss_pred CCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccH
Confidence 9999998643211 1000 00111111111 1334444544445 79999999999999999999999999
Q ss_pred EEecccccC
Q 010640 377 VMMGSFLAG 385 (505)
Q Consensus 377 V~~G~~f~~ 385 (505)
|++|+.++.
T Consensus 269 V~vg~a~~~ 277 (289)
T cd02810 269 VQVATALMW 277 (289)
T ss_pred heEcHHHHh
Confidence 999999863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-08 Score=95.94 Aligned_cols=110 Identities=19% Similarity=0.345 Sum_probs=93.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+.++..+.++.+.+.|+++++++... ....+.++.+++.+|++.|.+|+|.|.++++.+.++|+++++ + ++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-s-----P~ 88 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-S-----PG 88 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-C-----CC
Confidence 34567889999999999999997754 356788999999998999999999999999999999999993 2 01
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. -.++.+.|++.++|+++ |+.|+.++.+|+.+||+.|-+
T Consensus 89 ~--------------~~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 89 L--------------TPELAKHAQDHGIPIIP--GVATPSEIMLALELGITALKL 127 (204)
T ss_pred C--------------CHHHHHHHHHcCCcEEC--CCCCHHHHHHHHHCCCCEEEE
Confidence 1 12566778888999999 999999999999999999864
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=91.38 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=84.0
Q ss_pred eEeCCCCCHHHHHHHhcC-C-e--EEEEeCCCCCCeEEEEEeccccccc-cc-------cccccccccccCCCceEecCC
Q 010640 115 VFKAPDGCINDANDFDGS-N-Y--VFVTESGTRRSRILGYVTKSDWENL-SD-------NKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~-~--~pVvd~~~~~g~lvGivt~~Dl~~~-~~-------~~~~v~~im~~~~~~~~v~~~ 182 (505)
.++++++++.++.+.|.. + + +||+| +++++|+++.+|+... .. ...++.++|.+ ++.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd----~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~ 77 (119)
T cd04598 4 PTVSPDTTVNDVLERFERDPDLSALAVVD----DGRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDP--DPLIVEAD 77 (119)
T ss_pred CccCCCCcHHHHHHHHHhCCCccEEEEEE----CCeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCC--CcEEecCC
Confidence 678999999999999977 6 6 89998 4899999999998621 11 34579999988 89999999
Q ss_pred CCHHHHHHHHHHCCCC---eeEEeeC-CeeeeEEeechhhh
Q 010640 183 YDLGQIDEVLEKNDVD---FVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~---~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++.++++.|.+++.. ..||+++ |+++|+||..|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 78 TPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 9999999999998864 4478888 99999999999875
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=92.86 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=92.6
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+.++..+.++.+++.|+.++++..... ...+.++.+++.+|++.|.+|+|.+.++++.+.++|+++++-. +
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP------~ 84 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP------G 84 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC------C
Confidence 345677889999999999999977644 4678888899889889999999999999999999999999321 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+ -.++.+.+++.++|++. |+.|+.++..|+.+||+.|-+
T Consensus 85 ~--------------~~~vi~~a~~~~i~~iP--G~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 85 T--------------TQELLAAANDSDVPLLP--GAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred C--------------CHHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 1 12556778888999999 999999999999999999864
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-08 Score=93.15 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHH----HhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAK----KTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~----~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
+.++..+.++.+++.|+.++++....... .+.++.++ +.+|++.|.+|+|.|.++++.+.++|+++++-.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a---~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP--- 98 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFA---HEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTP--- 98 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcH---HHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECC---
Confidence 34557788999999999999998765443 44455453 556778999999999999999999999999421
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
++ -.++.+.+++.++|++. |+.|+.++..|+.+||+.|-+
T Consensus 99 ---~~--------------~~~v~~~~~~~~i~~iP--G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 99 ---LF--------------NPDIAKVCNRRKVPYSP--GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred ---CC--------------CHHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 11 12556777788999999 999999999999999999854
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.9e-08 Score=104.20 Aligned_cols=194 Identities=14% Similarity=0.214 Sum_probs=123.8
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCC----eeeeEEeechhhhhhcCCCCCCCccC-CCCcceE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDG----ERLDVVTREDVERLKGYPNLGKGTVG-PDGKWMV 239 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g----~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~l~v 239 (505)
...+.|.+ +++++.++.++.+++++|.++++..+||+|++ +++|+||.+|++........ ..+ ....-.+
T Consensus 81 ~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~~~~~---V~dvm~~~~~~ 155 (450)
T TIGR01302 81 RAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKDKGKP---VSEVMTREEVI 155 (450)
T ss_pred cccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhcCCCC---HHHhhCCCCCE
Confidence 35567777 89999999999999999999999999999874 89999999999864321110 111 0100111
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhH---HHHHHHHHHhCC------CceEEE-cccC----CHHHHHH
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQ---IEMIKYAKKTYP------ELDVIG-GNVV----TMYQAQN 305 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~---~~~i~~l~~~~~------~~~Vi~-g~V~----t~e~a~~ 305 (505)
.+. ......+.++.+.+.+...+.+....|...++ .+.++.+ .+| +..+++ +.+. +.+.+..
T Consensus 156 ~V~--~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~--~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~ 231 (450)
T TIGR01302 156 TVP--EGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR--KFPHASKDENGRLIVGAAVGTREFDKERAEA 231 (450)
T ss_pred EEC--CCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc--cCCcceEeCCCCEEEEEEecCchhHHHHHHH
Confidence 112 22345667777788888766554443332111 1222211 111 123333 3433 4678899
Q ss_pred HHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 306 LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 306 l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+.++|+|.|.+...- |+.......+..+++.. -++||++ |++.|..++..++.+|||++.+|
T Consensus 232 L~~aG~d~I~vd~a~----------g~~~~~~~~i~~i~~~~--~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 232 LVKAGVDVIVIDSSH----------GHSIYVIDSIKEIKKTY--PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHhCCCEEEEECCC----------CcHhHHHHHHHHHHHhC--CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 999999999885211 12222334444443321 2689999 99999999999999999999766
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=92.44 Aligned_cols=109 Identities=26% Similarity=0.344 Sum_probs=91.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
..++....++.+++.|.++++|..... ...+.|+.+++.+|++.|.+|+|.++++++.+.++|+++++-- .
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp---~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP------~ 93 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTP---AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSP------G 93 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCC---CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECC------C
Confidence 355677889999999999999977544 4578899999999989999999999999999999999999321 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+ .++.+.|..+++|++. |+.|+.++..|+.+|++.+-
T Consensus 94 ~~--------------~ev~~~a~~~~ip~~P--G~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 94 LN--------------PEVAKAANRYGIPYIP--GVATPTEIMAALELGASALK 131 (211)
T ss_pred CC--------------HHHHHHHHhCCCcccC--CCCCHHHHHHHHHcChhhee
Confidence 11 2566778888999999 99999999999999999774
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-08 Score=104.44 Aligned_cols=193 Identities=13% Similarity=0.102 Sum_probs=120.7
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhhcCCCCCCCccC-CCCc-ceEEE
Q 010640 168 DYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLKGYPNLGKGTVG-PDGK-WMVGA 241 (505)
Q Consensus 168 ~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~-l~v~a 241 (505)
..|.+ +++++.+++++.+++++|.++++..+||+|+ ++++|+||..|+......... ..+ .... -.+
T Consensus 104 ~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~~~~~---V~eIMt~~~~lv-- 176 (505)
T PLN02274 104 VGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVNDRETK---LSEVMTSDDDLV-- 176 (505)
T ss_pred ccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccccCCc---HHHHhccCCCcE--
Confidence 34666 8999999999999999999999999999986 699999999999653211000 000 0000 011
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCchh---HHHHHHHHHHhC-------CCceEEEcc-c----CCHHHHHHH
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSF---QIEMIKYAKKTY-------PELDVIGGN-V----VTMYQAQNL 306 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~---~~~~i~~l~~~~-------~~~~Vi~g~-V----~t~e~a~~l 306 (505)
.+.......+.++.+.+.+...+.+-...+...+ ..+.++.+.... ....+++|. | ...+.++.|
T Consensus 177 tv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l 256 (505)
T PLN02274 177 TAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHL 256 (505)
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHH
Confidence 1222334667777788888877755333332111 122222221100 012344432 2 246889999
Q ss_pred HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
.++|+|+|.+... .|+..-+...+..+++... +++||+ |+|.|.++...|+.+|||+|.+|
T Consensus 257 ~~ag~d~i~iD~~----------~g~~~~~~~~i~~ik~~~p--~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 257 VKAGVDVVVLDSS----------QGDSIYQLEMIKYIKKTYP--ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHcCCCEEEEeCC----------CCCcHHHHHHHHHHHHhCC--CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 9999999988631 1222223344544444221 477777 88999999999999999999775
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-08 Score=94.77 Aligned_cols=128 Identities=24% Similarity=0.387 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC-c--hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN-S--SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~-~--~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
.+.++.+.++|++++.++..... + ....+.++.+++.. +.++++ ++.|.+++..+.++|+|++.+..++ .. .
T Consensus 82 ~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g-~t--~ 156 (219)
T cd04729 82 IEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMA-DISTLEEALNAAKLGFDIIGTTLSG-YT--E 156 (219)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEE-ECCCHHHHHHHHHcCCCEEEccCcc-cc--c
Confidence 45788899999999988765421 1 25667788888875 577777 6889999999999999998664221 10 0
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
... ....+....+..+++. .++||++.|||.++.|+.+++.+|||+|++|+.|...
T Consensus 157 ~~~-~~~~~~~~~l~~i~~~---~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 157 ETA-KTEDPDFELLKELRKA---LGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred ccc-CCCCCCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 000 1112445555555443 4699999999999999999999999999999998643
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=102.02 Aligned_cols=135 Identities=19% Similarity=0.127 Sum_probs=87.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc---------hhHHHHHHHHHHhCC----CceEEEccc---C---CHHHHHHHHHc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS---------SFQIEMIKYAKKTYP----ELDVIGGNV---V---TMYQAQNLIEA 309 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~---------~~~~~~i~~l~~~~~----~~~Vi~g~V---~---t~e~a~~l~~a 309 (505)
+.+.++.+. .++|+++++.++.+. ....+.++.+++... ++||++|-- . ..+.++.+.++
T Consensus 159 ~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~ 237 (344)
T PRK05286 159 YLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEH 237 (344)
T ss_pred HHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 344444432 259999998765432 345677788888763 289988622 2 24567888899
Q ss_pred CCCEEEEccCCccee-ec-----ccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 310 GVDGLRVGMGSGSIC-TT-----QEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 310 Gad~I~v~~g~g~~~-~~-----~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
|+|+|.+.++--... .. ....+...+.. .++..+.+..+.. ++|||+.|||.+++|+.+.+.+|||+||+
T Consensus 238 Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v 317 (344)
T PRK05286 238 GIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQI 317 (344)
T ss_pred CCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHH
Confidence 999999874321100 00 00111111221 2333444444444 69999999999999999999999999999
Q ss_pred ccccc
Q 010640 380 GSFLA 384 (505)
Q Consensus 380 G~~f~ 384 (505)
||.++
T Consensus 318 ~~~~~ 322 (344)
T PRK05286 318 YSGLI 322 (344)
T ss_pred HHHHH
Confidence 99874
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=104.35 Aligned_cols=196 Identities=22% Similarity=0.274 Sum_probs=125.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccC-CCCcceEE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVG-PDGKWMVG 240 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~l~v~ 240 (505)
..++.++|.+ +++++++++++.++++.|.++++..+||+|+ ++++|+||..|+....... . ..+ .... .+.
T Consensus 88 ~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~~~~-~---V~diMt~~-~it 160 (479)
T PRK07807 88 WVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVDRFT-Q---VRDVMSTD-LVT 160 (479)
T ss_pred hccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCccCC-C---HHHhccCC-ceE
Confidence 3456788988 9999999999999999999999999999998 9999999999986432110 0 111 1111 111
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh-CCCc-----eEEEcc---c--CCHHHHHHHHHc
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT-YPEL-----DVIGGN---V--VTMYQAQNLIEA 309 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~-~~~~-----~Vi~g~---V--~t~e~a~~l~~a 309 (505)
+.......+.++.+.+.+...+.+....+...+++..-.-++.. ++.. ...++. + ...+.+..+.++
T Consensus 161 --V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~a 238 (479)
T PRK07807 161 --LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALLEA 238 (479)
T ss_pred --ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhhhccchHhhhccChhHHHHHHHHHHh
Confidence 12233456777778888888775533233221222111111111 1110 111211 1 235788999999
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
|+|.|.+.. ..+++....+.+.++++... +++||+ |.|.|.+....++.+|||+|-+|
T Consensus 239 Gvd~i~~D~----------a~~~~~~~~~~i~~ik~~~p--~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 239 GVDVLVVDT----------AHGHQEKMLEALRAVRALDP--GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCCEEEEec----------cCCccHHHHHHHHHHHHHCC--CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 999998752 12233445555655555332 478887 99999999999999999998644
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=92.48 Aligned_cols=110 Identities=27% Similarity=0.350 Sum_probs=87.4
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+.++..+.++.+.+.|+.++++..... ...+.++.+++.+|++.|.+|+|.+.++++.+.++|+++++-.
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t~---~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP------- 87 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRTP---NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP------- 87 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTST---THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES-------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCc---cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC-------
Confidence 356688999999999999999987643 4678888899999999999999999999999999999999421
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. .-.++.+.|++.++|++. |+.|+.++..|+.+||+.|-+
T Consensus 88 -----------~--~~~~v~~~~~~~~i~~iP--G~~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 88 -----------G--FDPEVIEYAREYGIPYIP--GVMTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp -----------S----HHHHHHHHHHTSEEEE--EESSHHHHHHHHHTT-SEEEE
T ss_pred -----------C--CCHHHHHHHHHcCCcccC--CcCCHHHHHHHHHCCCCEEEE
Confidence 1 113566777888999999 999999999999999998864
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-08 Score=92.36 Aligned_cols=109 Identities=24% Similarity=0.275 Sum_probs=91.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.++.+.+.|++++++..... ...+.++.+++.+|++.|.+|+|.+.++++.+.++|++++....
T Consensus 26 ~~~a~~i~~al~~~Gi~~iEitl~~~---~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~------- 95 (212)
T PRK05718 26 LEDAVPLAKALVAGGLPVLEVTLRTP---AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG------- 95 (212)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC-------
Confidence 45577889999999999999975433 46788899999999999999999999999999999999995421
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+. .++.+.|.+.++|+++ |+.|+.++..|+.+||+.|-+
T Consensus 96 -----------~~--~~vi~~a~~~~i~~iP--G~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 96 -----------LT--PPLLKAAQEGPIPLIP--GVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred -----------CC--HHHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE
Confidence 01 1445666678999999 999999999999999999987
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-07 Score=98.40 Aligned_cols=195 Identities=19% Similarity=0.242 Sum_probs=123.1
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccC-CCCcceEEEe
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVG-PDGKWMVGAA 242 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~l~v~a~ 242 (505)
.++.++|.+ +++++.+++++.+++++|.+++...+||+|+++++|+||.+|+....... . ..+ ....+ +.+.
T Consensus 88 VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~~~~~-~---V~dIMt~~l-itv~ 160 (475)
T TIGR01303 88 VKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGVDRFT-Q---VRDIMSTDL-VTAP 160 (475)
T ss_pred cchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcCCCCC-C---HHHHccCCc-eEeC
Confidence 345677887 89999999999999999999999999999889999999999985432110 0 111 11111 1112
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh-CCCc-----eEEEccc-----CCHHHHHHHHHcCC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT-YPEL-----DVIGGNV-----VTMYQAQNLIEAGV 311 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~-~~~~-----~Vi~g~V-----~t~e~a~~l~~aGa 311 (505)
......+.++.+.+.+...+.+....+...+++..-.-++.. ++.. ...++.. ...+.++.|.++|+
T Consensus 161 --~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~grl~Vgaav~~~~~~~~ra~~Lv~aGV 238 (475)
T TIGR01303 161 --ADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAAGRLRIGAAVGINGDVGGKAKALLDAGV 238 (475)
T ss_pred --CCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhccCceehheeeeCccHHHHHHHHHHhCC
Confidence 233466777788888888765533333222222222222211 1111 1112211 24578899999999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
|.|.+... .++....+..+..+++.. .++|||+ |.+.|.+++..++.+|||+|-+|
T Consensus 239 d~i~~D~a----------~g~~~~~~~~i~~i~~~~--~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 239 DVLVIDTA----------HGHQVKMISAIKAVRALD--LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred CEEEEeCC----------CCCcHHHHHHHHHHHHHC--CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 99987521 122233444454444322 2699999 66999999999999999999755
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-09 Score=111.22 Aligned_cols=109 Identities=18% Similarity=0.272 Sum_probs=90.8
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--c---ccccccccccccCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--S---DNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~---~~~~~v~~im~~~~ 174 (505)
+..++|..++ .++.+++++.++++.|.+ ++ +||+|+ +++++|+||.+|++.. . ..+.++.++|++
T Consensus 336 ~v~~im~~~~--~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~-- 408 (454)
T TIGR01137 336 TVKDLHLPAP--VTVHPTETVGDAIEILREYGFDQLPVVTE---AGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK-- 408 (454)
T ss_pred CHHHhCcCCC--eEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC--
Confidence 3446777777 999999999999999987 65 899997 7999999999998631 1 224579999988
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.+++++|.+++ .|||++ |+++|+||++|+++.+
T Consensus 409 ~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 409 KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 8899999999999999998864 355655 9999999999999864
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-07 Score=90.30 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc-----cCCHHHHHHH
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN-----VVTMYQAQNL 306 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~-----V~t~e~a~~l 306 (505)
++..+.++.+.+ ..+.+.++..+.. +..+.+.++.+++. ++||.+|- ..+.+.++.+
T Consensus 85 ~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l 161 (233)
T cd02911 85 EPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLI 161 (233)
T ss_pred HHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHH
Confidence 334444554444 5688888765421 23456777777774 78888863 2456778899
Q ss_pred HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.++|+|+|-+..+. .+ +......+.++ . .++|||+.|||.+.+|+.+++..|||+||+|+.
T Consensus 162 ~~aG~d~ihv~~~~---------~g-~~ad~~~I~~i---~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 162 EKAGADIIHVDAMD---------PG-NHADLKKIRDI---S--TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred HHhCCCEEEECcCC---------CC-CCCcHHHHHHh---c--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 99999988653211 01 01122333333 2 469999999999999999999999999999997
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=99.25 Aligned_cols=135 Identities=23% Similarity=0.268 Sum_probs=82.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEc---ccCCHH---HHHHHHHcCC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGG---NVVTMY---QAQNLIEAGV 311 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g---~V~t~e---~a~~l~~aGa 311 (505)
++.+.++.+. .++|+++++.++.+. ....+.++.+++.. ++|+++| ++.... .+..+.+.|+
T Consensus 113 d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~ 190 (295)
T PF01180_consen 113 DWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGA 190 (295)
T ss_dssp HHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTE
T ss_pred HHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccce
Confidence 4445555444 889999999876432 12233444445443 7899986 334433 3455557899
Q ss_pred CEEEEccCCccee----------ecccccccCcCh--HHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 312 DGLRVGMGSGSIC----------TTQEVCAVGRGQ--ATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 312 d~I~v~~g~g~~~----------~~~~~~g~g~p~--~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
++|...+.-.... ......|...|. ..++..+++.++..+ +|||+.|||.+++|+.+.+.+||++|
T Consensus 191 ~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~V 270 (295)
T PF01180_consen 191 DGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAV 270 (295)
T ss_dssp CEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEE
T ss_pred eEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHh
Confidence 9998643211100 000112222232 235666666666666 99999999999999999999999999
Q ss_pred Eeccccc
Q 010640 378 MMGSFLA 384 (505)
Q Consensus 378 ~~G~~f~ 384 (505)
|++|.+.
T Consensus 271 qv~Sal~ 277 (295)
T PF01180_consen 271 QVCSALI 277 (295)
T ss_dssp EESHHHH
T ss_pred eechhhh
Confidence 9999873
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.8e-08 Score=87.89 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=94.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-ch-hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-SS-FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-~~-~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
..+.++.|.++|++++.+|.+.-. +. ...+.++. ..+|++.+|+ .+.|.+++..+.++|+|+| |.+-..+|
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~~l~MA-D~St~ee~l~a~~~G~D~I----GTTLsGYT 159 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYPGQLAMA-DCSTFEEGLNAHKLGFDII----GTTLSGYT 159 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcCCcEEEe-ccCCHHHHHHHHHcCCcEE----eccccccc
Confidence 567889999999999999986532 22 34455554 3445777777 8999999999999999999 22222222
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
......-.|.+..+..+.+ .+.+||+.|.+.+|....+|+.+||++|.+|+++...
T Consensus 160 ~~~~~~~~pDf~lvk~l~~----~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp 215 (229)
T COG3010 160 GYTEKPTEPDFQLVKQLSD----AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRP 215 (229)
T ss_pred CCCCCCCCCcHHHHHHHHh----CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCH
Confidence 2111122467766655544 6799999999999999999999999999999998653
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-07 Score=95.73 Aligned_cols=129 Identities=15% Similarity=0.195 Sum_probs=88.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---c-----CCHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---V-----VTMYQ 302 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V-----~t~e~ 302 (505)
+++..+.++.+.++|+|.|.++..+. +...+.+.++.+++.. +.||.++- . ...+.
T Consensus 74 ~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~ 152 (319)
T TIGR00737 74 PDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEA 152 (319)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHH
Confidence 44566677777778999999976432 1233456777777776 67887752 1 13466
Q ss_pred HHHHHHcCCCEEEEccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HhCCCEEEec
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL-VLGASTVMMG 380 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal-~lGA~~V~~G 380 (505)
++.+.++|+|+|.+... . . ..+. +.+....+ .+..+..++|||+.|||.++.|+.+++ ..|||+||+|
T Consensus 153 a~~l~~~G~d~i~vh~r--~----~-~~~~~~~~~~~~i---~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 153 ARIAEDAGAQAVTLHGR--T----R-AQGYSGEANWDII---ARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred HHHHHHhCCCEEEEEcc--c----c-cccCCCchhHHHH---HHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 78889999999987411 0 0 0111 11233333 333444679999999999999999999 6889999999
Q ss_pred ccccC
Q 010640 381 SFLAG 385 (505)
Q Consensus 381 ~~f~~ 385 (505)
+.++.
T Consensus 223 R~~l~ 227 (319)
T TIGR00737 223 RGALG 227 (319)
T ss_pred hhhhh
Confidence 99874
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=100.98 Aligned_cols=195 Identities=22% Similarity=0.219 Sum_probs=119.3
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhhcCCCCCCCccC-CCC-cceE
Q 010640 166 IFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLKGYPNLGKGTVG-PDG-KWMV 239 (505)
Q Consensus 166 v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~-~l~v 239 (505)
..+.|.. +++++++++++.+++++|.++++..+||+|+ ++++|+||.+|+......... ..+ ... .-.+
T Consensus 98 ~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~~~~~---V~diMt~~~~lv 172 (495)
T PTZ00314 98 FENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKSTP---VSEVMTPREKLV 172 (495)
T ss_pred ccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcccCCCC---HHHhhCCcCCce
Confidence 4456766 8899999999999999999999999999986 689999999998743221100 001 000 0111
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH-hCC------CceEEEccc-----CCHHHHHHHH
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK-TYP------ELDVIGGNV-----VTMYQAQNLI 307 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~-~~~------~~~Vi~g~V-----~t~e~a~~l~ 307 (505)
.+. ......+..+.+.+.+...+.+....+...+++..-..++. .+| ...+.+|-. ...+.+..+.
T Consensus 173 tv~--~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~ 250 (495)
T PTZ00314 173 VGN--TPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAALI 250 (495)
T ss_pred EeC--CCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHHHH
Confidence 111 22335667777788888776553332221111111111111 111 123333211 2357889999
Q ss_pred HcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 308 EAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 308 ~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++|+|.|.+... .|+..-.++.+.++++... ++||++ |.+.|..++..++.+|||++.+|
T Consensus 251 ~ag~d~i~id~a----------~G~s~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 251 EAGVDVLVVDSS----------QGNSIYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HCCCCEEEEecC----------CCCchHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 999999987531 1111112344544444321 578888 99999999999999999999764
|
|
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-08 Score=89.60 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=70.7
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--cc--c------------ccccccc-----
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--DN--K------------VKIFDYM----- 170 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~~--~------------~~v~~im----- 170 (505)
+++++++++.+|++.|.+ ++ +||+|+ +++++|+||.+|+.... .. . ..+.++|
T Consensus 4 ~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 80 (133)
T cd04592 4 IKVSPTTTLKEALNLMLDEKQSCVLVVDS---DDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS 80 (133)
T ss_pred eEECCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence 789999999999999987 65 999997 89999999999986211 11 1 1133455
Q ss_pred ----ccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC
Q 010640 171 ----RDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD 205 (505)
Q Consensus 171 ----~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~ 205 (505)
++ +++++.+++++.+++++|.+++++.+||+|+
T Consensus 81 ~~~~~~--~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 81 YGGQEC--GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred hcccCC--CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 34 7899999999999999999999999999986
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=99.95 Aligned_cols=188 Identities=19% Similarity=0.181 Sum_probs=113.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhhcCCCCCCCccC-CC--CcceEEEeecCCc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLKGYPNLGKGTVG-PD--GKWMVGAAIGTRE 247 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~~~~~~~~~~~d-~~--~~l~v~a~i~~~~ 247 (505)
+++++++++++.++++.|.+++...+||+|+ ++++|+||..|+......... +..+ .. ..+ +. +....
T Consensus 106 ~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~~~~~~--~V~dIMt~~~~~-it--v~~d~ 180 (502)
T PRK07107 106 SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISRMSLDT--KVKDFMTPFEKL-VT--ANEGT 180 (502)
T ss_pred CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccccCCCC--CHHHHhCCCCCe-EE--ECCCC
Confidence 4578999999999999999999999999985 799999999998643211100 0111 01 111 21 12233
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH-hCC--------CceEEEcccC---CHHHHHHHHHcCCCEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK-TYP--------ELDVIGGNVV---TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~-~~~--------~~~Vi~g~V~---t~e~a~~l~~aGad~I~ 315 (505)
...+.++.+.+.++..+.+-...+...+++..-..++. .+| ...|.+ .+. ..+.++.|.++|+|+|.
T Consensus 181 ~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~~P~a~~d~~grL~V~~-av~~~~~~~ra~~Lv~aGvd~i~ 259 (502)
T PRK07107 181 TLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKENPLELLDSSKRYVVGA-GINTRDYAERVPALVEAGADVLC 259 (502)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcccChhhhhhhccCeeeee-ccChhhHHHHHHHHHHhCCCeEe
Confidence 46677777888888887654322221111111111111 111 222322 332 24678889999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+... .++..-.+..+..+++... .+++|++ |.|.+++++..++.+|||++.+|
T Consensus 260 vd~a----------~g~~~~~~~~i~~ir~~~~-~~~~V~a-GnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 260 IDSS----------EGYSEWQKRTLDWIREKYG-DSVKVGA-GNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred ecCc----------ccccHHHHHHHHHHHHhCC-CCceEEe-ccccCHHHHHHHHHcCCCEEEEC
Confidence 7521 1121223445554444322 1244544 99999999999999999999774
|
|
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=103.03 Aligned_cols=116 Identities=9% Similarity=-0.028 Sum_probs=96.3
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc--cc---cccccccccCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD--NK---VKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~--~~---~~v~~im~~~~ 174 (505)
...++|++..+.+.++.+.++.++++.+.+ +| +||++++ .+.++|+|..+|+..... .. ..+.++|+
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r--- 262 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS--LDDAISMLRVREAYRLMTEKKEFTKENMLRAAD--- 262 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC--CCceEEEEEHHHHHHHhhccCcCCHHHHHhhcc---
Confidence 344688887777899999999999999998 88 9999763 588999999999863211 11 22345554
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
++..++++.++.++++.|++++.+...|+|+ |...|+||.+||++.+-.
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhC
Confidence 6889999999999999999999999999999 999999999999998753
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-08 Score=95.89 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=89.8
Q ss_pred CccHHHHHHHHHHc---CccEEEEeCCCCC----------chhHHHHHHHHHHhCCCceEEEccc--CC----HHHHHHH
Q 010640 246 RESDKERLEHLVKA---GVNVVVLDSSQGN----------SSFQIEMIKYAKKTYPELDVIGGNV--VT----MYQAQNL 306 (505)
Q Consensus 246 ~~~~~e~~~~liea---Gad~I~i~~~~g~----------~~~~~~~i~~l~~~~~~~~Vi~g~V--~t----~e~a~~l 306 (505)
.+++.+.++.+.+. ++|+++++.++.+ ...+.+.++.+++.. ++||++|-- .+ .+.++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l 180 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEAL 180 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHH
Confidence 44566666666664 6999999887533 245667777777775 789988722 12 2344555
Q ss_pred HHc--CCCEEEEccCCcc---ee--ecc-------cccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHH
Q 010640 307 IEA--GVDGLRVGMGSGS---IC--TTQ-------EVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVK 368 (505)
Q Consensus 307 ~~a--Gad~I~v~~g~g~---~~--~~~-------~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~k 368 (505)
.++ |+|+|.+.+.-+. +. ..+ ...|...|. ..++..+++..+.. ++|||+.|||.+++|+.+
T Consensus 181 ~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e 260 (294)
T cd04741 181 NAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFR 260 (294)
T ss_pred hccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHH
Confidence 567 9999986432110 11 011 111221122 22455555555555 499999999999999999
Q ss_pred HHHhCCCEEEeccccc
Q 010640 369 ALVLGASTVMMGSFLA 384 (505)
Q Consensus 369 al~lGA~~V~~G~~f~ 384 (505)
.+.+|||+||+||.+.
T Consensus 261 ~l~aGA~~Vqv~ta~~ 276 (294)
T cd04741 261 MRLAGASAVQVGTALG 276 (294)
T ss_pred HHHcCCCceeEchhhh
Confidence 9999999999999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.7e-08 Score=98.32 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=86.0
Q ss_pred HHHHHHHHHcC--ccEEEEeCCCCCc---------hhHHHHHHHHHHhCC------CceEEEcc---cC---CHHHHHHH
Q 010640 250 KERLEHLVKAG--VNVVVLDSSQGNS---------SFQIEMIKYAKKTYP------ELDVIGGN---VV---TMYQAQNL 306 (505)
Q Consensus 250 ~e~~~~lieaG--ad~I~i~~~~g~~---------~~~~~~i~~l~~~~~------~~~Vi~g~---V~---t~e~a~~l 306 (505)
.+.++.+.+.+ +|+++++.++.+. ..+.+.++.+++... .+||++|- +. -.+.++.+
T Consensus 154 ~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~ 233 (335)
T TIGR01036 154 EDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSL 233 (335)
T ss_pred HHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHH
Confidence 34444443333 9999998765432 234556666665531 28999872 22 24466778
Q ss_pred HHcCCCEEEEccCCcc--eee----cccccccCcChHH--HHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 307 IEAGVDGLRVGMGSGS--ICT----TQEVCAVGRGQAT--AVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~--~~~----~~~~~g~g~p~~~--~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
.++|+|+|.+.+.--. ... .....|...|.+. ++..+.+..+.. ++|||+.|||.++.|+.+++.+||++
T Consensus 234 ~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 234 VELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASL 313 (335)
T ss_pred HHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcH
Confidence 8999999988642110 000 0012222223222 455555554444 59999999999999999999999999
Q ss_pred EEeccccc
Q 010640 377 VMMGSFLA 384 (505)
Q Consensus 377 V~~G~~f~ 384 (505)
||+||.+.
T Consensus 314 Vqv~ta~~ 321 (335)
T TIGR01036 314 LQIYSGFI 321 (335)
T ss_pred HHhhHHHH
Confidence 99999974
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.1e-07 Score=92.22 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=85.4
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc---c-----CCHHHH
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN---V-----VTMYQA 303 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~---V-----~t~e~a 303 (505)
++..+.++.+.+.|+|.|.++.++.. +....+.++.+++.. ++||.++- . ...+.+
T Consensus 77 ~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a 155 (321)
T PRK10415 77 KEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIA 155 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHH
Confidence 34445555566778999988775532 234566677777765 66776642 1 134566
Q ss_pred HHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEEeccc
Q 010640 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVMMGSF 382 (505)
Q Consensus 304 ~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~~ 382 (505)
+.+.++|+|+|.+.. .... .... |.+....+.++ .+..++|||+.|||.++.|+.+++. .|||+||+|+.
T Consensus 156 ~~le~~G~d~i~vh~--rt~~--~~~~--G~a~~~~i~~i---k~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~ 226 (321)
T PRK10415 156 QLAEDCGIQALTIHG--RTRA--CLFN--GEAEYDSIRAV---KQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRA 226 (321)
T ss_pred HHHHHhCCCEEEEec--Cccc--cccC--CCcChHHHHHH---HHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChH
Confidence 788899999997731 1100 0011 12223344443 3446799999999999999999997 69999999998
Q ss_pred ccC
Q 010640 383 LAG 385 (505)
Q Consensus 383 f~~ 385 (505)
++.
T Consensus 227 ~l~ 229 (321)
T PRK10415 227 AQG 229 (321)
T ss_pred hhc
Confidence 864
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=96.60 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=83.3
Q ss_pred CccEEEEeCCCCCc---------hhHHHHHHHHHHhCC----CceEEEccc--CC----HHHHHHHHHcCCCEEEEccCC
Q 010640 260 GVNVVVLDSSQGNS---------SFQIEMIKYAKKTYP----ELDVIGGNV--VT----MYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 260 Gad~I~i~~~~g~~---------~~~~~~i~~l~~~~~----~~~Vi~g~V--~t----~e~a~~l~~aGad~I~v~~g~ 320 (505)
.+|++.++.++.+. ....+.++.+++... ++||++|-- .+ .+.++.+.++|+|+|.+.+.-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 49999998866543 345677778877652 378888632 22 456677889999999875421
Q ss_pred ccee------ecccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 321 GSIC------TTQEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 321 g~~~------~~~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.... ......|+..|.. .++..+.+..+.. ++|||+.|||.++.|+.+.+.+|||+||+||.|+
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~ 313 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLV 313 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHH
Confidence 1000 0001112222221 2344455554444 6999999999999999999999999999999985
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-07 Score=88.06 Aligned_cols=176 Identities=21% Similarity=0.253 Sum_probs=109.7
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
...+.++.+.+.+.+.+.|+|- +...|--...++++.... .....+.++..+. ..+.++.+++.|+|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~--------~~~~pv~~~GgI~----~~e~~~~~~~~Gad 97 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK--------AVGIPVQVGGGIR----SLEDIERLLDLGVS 97 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH--------hcCCCEEEeCCcC----CHHHHHHHHHcCCC
Confidence 5567777888899999999986 432222222333333211 1122345555554 45778888899999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-----------------ccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-----------------NVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-----------------~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+.+....-. ..++++++.+.+..-.+++. .....+.++.+.+.|++.+.+.. .
T Consensus 98 ~vvigs~~l~---dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~------~ 168 (234)
T cd04732 98 RVIIGTAAVK---NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTD------I 168 (234)
T ss_pred EEEECchHHh---ChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEe------e
Confidence 9988553321 13445556666533122221 11234567788899999986631 1
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++.-...| +..+.+..+.+ ..++|+++.|||.+..|+.+++..||++|++|+.|.
T Consensus 169 ~~~g~~~g-~~~~~i~~i~~---~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~ 223 (234)
T cd04732 169 SRDGTLSG-PNFELYKELAA---ATGIPVIASGGVSSLDDIKALKELGVAGVIVGKALY 223 (234)
T ss_pred cCCCccCC-CCHHHHHHHHH---hcCCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHH
Confidence 11111122 44555555443 457999999999999999999999999999999985
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=88.13 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=92.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC---CceEEEcccCCHHHHHHHHHcCCCEEEEccCCc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP---ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSG 321 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~---~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g 321 (505)
+.++....++.+.+.|+.++++..... ...+.++.+++.++ ++.|.+|+|.|.++++.+.++|+++++-.
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~~---~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP---- 95 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTNP---FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSP---- 95 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCc---cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECC----
Confidence 345577889999999999999977643 46788899988883 57889999999999999999999999421
Q ss_pred ceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 322 SICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 322 ~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
++ -.++.++|++.++|++. |+.|+.++..|+.+|||.|.+
T Consensus 96 --~~--------------~~~v~~~~~~~~i~~iP--G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 96 --SF--------------NRETAKICNLYQIPYLP--GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred --CC--------------CHHHHHHHHHcCCCEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 11 12556778888999999 999999999999999999997
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-07 Score=88.31 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc---c---CCHHHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN---V---VTMYQA 303 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~---V---~t~e~a 303 (505)
++++..+.++.+ +.+++.+.++..+.. +..+.+.++.+++. ++||.+|- . .+.+.+
T Consensus 78 ~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a 154 (231)
T TIGR00736 78 DLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDA 154 (231)
T ss_pred CHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHH
Confidence 344455555544 558999999875522 23456666666643 68888862 2 345788
Q ss_pred HHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 304 ~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.+.++|+|+|.|... ..|.+......+.++++ .. ++|||+.|||.+.+|+.+.+..|||+||+|+.
T Consensus 155 ~~l~~aGad~i~Vd~~---------~~g~~~a~~~~I~~i~~---~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~ 222 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAM---------YPGKPYADMDLLKILSE---EFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARA 222 (231)
T ss_pred HHHHHcCCCEEEEeeC---------CCCCchhhHHHHHHHHH---hcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHh
Confidence 9999999999977310 11111123444544444 44 49999999999999999999999999999997
Q ss_pred cc
Q 010640 383 LA 384 (505)
Q Consensus 383 f~ 384 (505)
.+
T Consensus 223 ~l 224 (231)
T TIGR00736 223 IL 224 (231)
T ss_pred hc
Confidence 64
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.6e-07 Score=88.43 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee----
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC---- 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~---- 324 (505)
....++.|.++|+|+| +.+ .......+.++.+|..| ++++++ .+.|.+++..+.+.|+|+|---..+++..
T Consensus 76 ~~~Ea~~L~eaGvDiI--DaT-~r~rP~~~~~~~iK~~~-~~l~MA-D~stleEal~a~~~Gad~I~TTl~gyT~~~~~~ 150 (283)
T cd04727 76 HFVEAQILEALGVDMI--DES-EVLTPADEEHHIDKHKF-KVPFVC-GARNLGEALRRISEGAAMIRTKGEAGTGNVVEA 150 (283)
T ss_pred HHHHHHHHHHcCCCEE--ecc-CCCCcHHHHHHHHHHHc-CCcEEc-cCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHH
Confidence 3677888999999999 432 22333567888888988 899888 79999999999999999995532222111
Q ss_pred ----------------ecccc----cccCcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 325 ----------------TTQEV----CAVGRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 325 ----------------~~~~~----~g~g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
++... .....+.+..|..+.+ ..++||| +.|||.++.++.+++.+||++|.+|+.
T Consensus 151 ~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~---~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSA 227 (283)
T cd04727 151 VRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAK---LGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 227 (283)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHH---hcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 11000 0001244455554443 4569997 999999999999999999999999999
Q ss_pred ccC
Q 010640 383 LAG 385 (505)
Q Consensus 383 f~~ 385 (505)
+..
T Consensus 228 I~~ 230 (283)
T cd04727 228 IFK 230 (283)
T ss_pred hhc
Confidence 864
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.69 E-value=1e-06 Score=84.30 Aligned_cols=178 Identities=14% Similarity=0.171 Sum_probs=113.8
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
....+..+..+.+.+.+...|-|+|+ +..-|-+. ++-...... .+++....... ..+.++.+.+
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~--~~~~i~~~v-----------~iPi~~~~~i~--~~~~v~~~~~ 92 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLE--DLRAVREAV-----------SLPVLRKDFII--DPYQIYEARA 92 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHH--HHHHHHHhc-----------CCCEEECCeec--CHHHHHHHHH
Confidence 34556788899999999999999987 66655542 222211110 12222211111 2257888999
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
+|+|.+.+....-......++++..+.. ++.+++ .+.+.++++.+.+.|++.+.+.. +..... .+.+.
T Consensus 93 ~Gad~v~l~~~~~~~~~~~~~~~~~~~~--g~~~~v-~v~~~~e~~~~~~~g~~~i~~t~--------~~~~~~-~~~~~ 160 (217)
T cd00331 93 AGADAVLLIVAALDDEQLKELYELAREL--GMEVLV-EVHDEEELERALALGAKIIGINN--------RDLKTF-EVDLN 160 (217)
T ss_pred cCCCEEEEeeccCCHHHHHHHHHHHHHc--CCeEEE-EECCHHHHHHHHHcCCCEEEEeC--------CCcccc-CcCHH
Confidence 9999998855432212333444433332 555544 56799999999999999995531 111111 13344
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.++++... .++|+++.|||.++.|+.+++.+||++|.+|+.+..
T Consensus 161 ~~~~l~~~~~-~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 161 TTERLAPLIP-KDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred HHHHHHHhCC-CCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 4544443321 368999999999999999999999999999999864
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=100.45 Aligned_cols=124 Identities=14% Similarity=0.106 Sum_probs=99.4
Q ss_pred HHHHHhhhc-----cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccc---
Q 010640 95 ARLVVSAKS-----RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNK--- 163 (505)
Q Consensus 95 ~~~v~~v~~-----~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~--- 163 (505)
.+++..+.+ .+++|++..+.+.++.+.++.++.+.+.+ +| +||++++ .+.++|+++.+|+.......
T Consensus 194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~--~D~iiGiv~~Kdll~~~~~~~~~ 271 (429)
T COG1253 194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD--LDNIIGIVHVKDLLRALLDGQSD 271 (429)
T ss_pred HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC--CCcEEEEEEHHHHHHHHhcCccc
Confidence 345555543 44588887777889999999999999988 88 9999943 78899999999996332111
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
......+. +++.+++.+++.++++.|++.+.+...|+|+ |.+.|+||.+||++..-.
T Consensus 272 ~~~~~~~~---~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 272 LDLRVLVR---PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred cchhhccc---CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhC
Confidence 12222222 7899999999999999999999999999999 999999999999998764
|
|
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=73.45 Aligned_cols=54 Identities=19% Similarity=0.354 Sum_probs=51.0
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 166 IFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 166 v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++++|++ +++++++++++.++++.|.+++.+.+||+|+ |+++|+||++||++..
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 4678998 9999999999999999999999999999998 9999999999999875
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=90.06 Aligned_cols=128 Identities=19% Similarity=0.220 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee----
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC---- 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~---- 324 (505)
....++.|.+.|+|+| |.+. ......+.+..+|..| ++|+++ .+.+.++|...++.|+|+|.--..+|+..
T Consensus 78 h~~Ea~~L~~~GvDiI--DeTe-~lrPade~~~~~K~~f-~vpfma-d~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~a 152 (287)
T TIGR00343 78 HFVEAQILEALGVDYI--DESE-VLTPADWTFHIDKKKF-KVPFVC-GARDLGEALRRINEGAAMIRTKGEAGTGNIVEA 152 (287)
T ss_pred HHHHHHHHHHcCCCEE--EccC-CCCcHHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCEEeccccCCCccHHHH
Confidence 4677888999999999 4332 2233567788888888 899887 79999999999999999996532222211
Q ss_pred ------ec---cc-------------ccccCcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 325 ------TT---QE-------------VCAVGRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 325 ------~~---~~-------------~~g~g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++ +. ....+ +.+..+.++.+ ..++||+ +.|||.|+.|+..++.+||++|.+|
T Consensus 153 v~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~elLkei~~---~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVG 228 (287)
T TIGR00343 153 VRHMRKINEEIRQIQNMLEEEDLAAVAKELR-VPVELLLEVLK---LGKLPVVNFAAGGVATPADAALMMQLGADGVFVG 228 (287)
T ss_pred HHHHHHHHHHHHHHhcccchhHHhhhhcccC-CCHHHHHHHHH---hCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEh
Confidence 00 00 11122 44555555544 3569998 9999999999999999999999999
Q ss_pred ccccC
Q 010640 381 SFLAG 385 (505)
Q Consensus 381 ~~f~~ 385 (505)
+.+..
T Consensus 229 SaI~k 233 (287)
T TIGR00343 229 SGIFK 233 (287)
T ss_pred HHhhc
Confidence 99864
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.5e-08 Score=107.54 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=95.7
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc--cc-----------------
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN--LS----------------- 160 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~--~~----------------- 160 (505)
+..++|..++ +++++++++.+|+++|.+ ++ +||+|+ +|+++|+||.+|+.. ..
T Consensus 69 ~V~dim~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i 143 (546)
T PRK14869 69 QVRDLEIDKP--VTVSPDTSLKEAWNLMDENNVKTLPVVDE---EGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENI 143 (546)
T ss_pred cHHHhcCCCC--cEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHH
Confidence 3446777788 999999999999999988 76 999997 899999999887631 00
Q ss_pred --------------------------------------------------------------------------------
Q 010640 161 -------------------------------------------------------------------------------- 160 (505)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (505)
T Consensus 144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~ 223 (546)
T PRK14869 144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKE 223 (546)
T ss_pred HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHh
Confidence
Q ss_pred -------------------ccccccccccc-cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 161 -------------------DNKVKIFDYMR-DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 161 -------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
....++.++|+ + +++++++++++.++.+.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus 224 ~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~ 301 (546)
T PRK14869 224 NGVTVISTPYDTFTTARLINQSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301 (546)
T ss_pred CCCeEEEecccHHHHHHHhhcCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhc
Confidence 01235677898 6 8999999999999999999999999999998 99999999999998
Q ss_pred hhc
Q 010640 220 LKG 222 (505)
Q Consensus 220 ~~~ 222 (505)
...
T Consensus 302 ~~~ 304 (546)
T PRK14869 302 PVR 304 (546)
T ss_pred ccc
Confidence 654
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-06 Score=84.15 Aligned_cols=176 Identities=21% Similarity=0.247 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+..++++.+.+.+.+.+-|+|. +..-|--...++++.... .....+.++..+. ..+.++.+.+.|+
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~--------~~~~pi~~ggGI~----~~ed~~~~~~~Ga 95 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVR--------ETGVPVQVGGGIR----SLEDVEKLLDLGV 95 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHH--------hcCCCEEEeCCcC----CHHHHHHHHHcCC
Confidence 45677788889999999999987 554453222334443321 1112344544443 5577888899999
Q ss_pred cEEEEeCC-CCCchhHHHHHHHHHHhCCCceEEE-----------c------ccCCHHHHHHHHHcCCCEEEEc-cCCcc
Q 010640 262 NVVVLDSS-QGNSSFQIEMIKYAKKTYPELDVIG-----------G------NVVTMYQAQNLIEAGVDGLRVG-MGSGS 322 (505)
Q Consensus 262 d~I~i~~~-~g~~~~~~~~i~~l~~~~~~~~Vi~-----------g------~V~t~e~a~~l~~aGad~I~v~-~g~g~ 322 (505)
+.+.+.+. ..+. +.+..+.+.+..-.+++ . .....+.++.+.+.|++.+.+- ..
T Consensus 96 ~~vvlgs~~l~d~----~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~--- 168 (230)
T TIGR00007 96 DRVIIGTAAVENP----DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDIS--- 168 (230)
T ss_pred CEEEEChHHhhCH----HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeec---
Confidence 99877432 1222 33344444441111211 1 1122567788999999977652 21
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+.....| +....+..+.+ ..++|++++|||++..|+.+++..||++|++|+.|..
T Consensus 169 ----~~g~~~g-~~~~~i~~i~~---~~~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 169 ----RDGTLSG-PNFELTKELVK---AVNVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred ----CCCCcCC-CCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 1111122 34555544443 3579999999999999999999999999999999853
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-07 Score=86.26 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---c----CCHHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---V----VTMYQ 302 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V----~t~e~ 302 (505)
.++++.+.++.+.++|+|.+.++..+. ......+.++.+++.. ..|+.++- . ...+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCCchHHHHH
Confidence 345677777888888999999987552 3345678888888876 35666641 1 12344
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~ 381 (505)
++.+.++|+|+|.+..... .....+.+.+..+.. ..+..++||+++|||.+..|+.+++.. |||+|++|+
T Consensus 144 ~~~l~~~Gvd~i~v~~~~~------~~~~~~~~~~~~~~~---i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr 214 (231)
T cd02801 144 AKALEDAGASALTVHGRTR------EQRYSGPADWDYIAE---IKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGR 214 (231)
T ss_pred HHHHHHhCCCEEEECCCCH------HHcCCCCCCHHHHHH---HHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcH
Confidence 6778889999998752210 000011223444433 334567999999999999999999998 899999999
Q ss_pred cccC
Q 010640 382 FLAG 385 (505)
Q Consensus 382 ~f~~ 385 (505)
.++.
T Consensus 215 ~~l~ 218 (231)
T cd02801 215 GALG 218 (231)
T ss_pred HhHh
Confidence 8864
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-07 Score=86.96 Aligned_cols=129 Identities=20% Similarity=0.227 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec--
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT-- 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~-- 326 (505)
....++.|.+.|+|+| |.+. .....-+.+..+|..| ++|+++ .+.+.++|...++.|+|+|.--..+|+....
T Consensus 85 h~~Ea~~L~~~GvDiI--D~Te-~lrpad~~~~~~K~~f-~~~fma-d~~~l~EAlrai~~GadmI~Ttge~gtg~v~~a 159 (293)
T PRK04180 85 HFVEAQILEALGVDYI--DESE-VLTPADEEYHIDKWDF-TVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEA 159 (293)
T ss_pred HHHHHHHHHHcCCCEE--eccC-CCCchHHHHHHHHHHc-CCCEEc-cCCCHHHHHHHHHCCCCeeeccCCCCCccHHHH
Confidence 4677888999999999 3332 2233557788888888 889887 7999999999999999999653222221000
Q ss_pred -----------cccccc-----------CcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 327 -----------QEVCAV-----------GRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 327 -----------~~~~g~-----------g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.+.|. -.+.+..+.++.+ ..++||+ +.|||.|+.|+..++.+||++|.+|+.
T Consensus 160 v~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~---~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSa 236 (293)
T PRK04180 160 VRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAE---LGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSG 236 (293)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHH---hCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHH
Confidence 001111 1234455554444 3569998 999999999999999999999999999
Q ss_pred ccC
Q 010640 383 LAG 385 (505)
Q Consensus 383 f~~ 385 (505)
+..
T Consensus 237 I~k 239 (293)
T PRK04180 237 IFK 239 (293)
T ss_pred hhc
Confidence 864
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-06 Score=84.28 Aligned_cols=133 Identities=21% Similarity=0.268 Sum_probs=92.1
Q ss_pred cHHHHHHHHHH-cCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC--
Q 010640 248 SDKERLEHLVK-AGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS-- 320 (505)
Q Consensus 248 ~~~e~~~~lie-aGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~-- 320 (505)
+..+.++.+.+ .|++.+++ |. +........+.++.+.+.. ++|+.+ |++.+.++++.+..+|++.++++...
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~ 110 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQ 110 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhc
Confidence 35678888888 68998866 43 3222234577888888765 789877 68899999999999999999886410
Q ss_pred -------------ccee---------------------------------------eccc-cccc-CcChHHHHHHHHHH
Q 010640 321 -------------GSIC---------------------------------------TTQE-VCAV-GRGQATAVYKVSSI 346 (505)
Q Consensus 321 -------------g~~~---------------------------------------~~~~-~~g~-g~p~~~~l~~v~~~ 346 (505)
..+. .+.. ..|. ..|.+..+..+
T Consensus 111 ~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l--- 187 (234)
T PRK13587 111 DTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQL--- 187 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHH---
Confidence 0000 0000 0000 01334444333
Q ss_pred HhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 347 ~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++..++|||++|||++..|+.+++.+|+++|.+|++|.
T Consensus 188 ~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~ 225 (234)
T PRK13587 188 VKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAH 225 (234)
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHH
Confidence 33457999999999999999999999999999999884
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8e-07 Score=82.86 Aligned_cols=131 Identities=19% Similarity=0.311 Sum_probs=93.2
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc----
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM---- 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~---- 318 (505)
.+..+.++..-+.|+|-+++ |. +......+++++++..+.. .+|+-+ |++.+.++++++..+|||=|.+..
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~gr~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEGRETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccccccchhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 45778899999999998765 43 3333457888888888876 788855 688999999999999999775532
Q ss_pred -------------------------C-Cc---ce-ee---ccc-------------------------------ccccCc
Q 010640 319 -------------------------G-SG---SI-CT---TQE-------------------------------VCAVGR 334 (505)
Q Consensus 319 -------------------------g-~g---~~-~~---~~~-------------------------------~~g~g~ 334 (505)
. .| .. ++ ++. ..|+.
T Consensus 109 ~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyD- 187 (256)
T COG0107 109 DPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYD- 187 (256)
T ss_pred ChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcC-
Confidence 0 01 00 00 011 11121
Q ss_pred ChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 335 p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
+...+..+...++||||+||..+++++..++..| ||++..++.|.
T Consensus 188 -----l~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH 233 (256)
T COG0107 188 -----LELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIFH 233 (256)
T ss_pred -----HHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhh
Confidence 1222333445679999999999999999999988 99999999984
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=84.35 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC---
Q 010640 248 SDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~--- 320 (505)
+..+.++.+.+.|++.+++ |. ..|.. ...+.++.+.+.+ .+|+.+ |++.+.++++.+..+|++.+.++...
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~-~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~ 110 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRG-SNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARVNIGTAALEN 110 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCC-ccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCC
Confidence 4678888898999998766 33 33433 3458888888876 788877 68899999999999999998776410
Q ss_pred ------------cceee---c---cc-ccccC---------------------------------cChHHHHHHHHHHHh
Q 010640 321 ------------GSICT---T---QE-VCAVG---------------------------------RGQATAVYKVSSIAA 348 (505)
Q Consensus 321 ------------g~~~~---~---~~-~~g~g---------------------------------~p~~~~l~~v~~~~~ 348 (505)
..+.. . .. ..||. .|....+.++ ++
T Consensus 111 p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i---~~ 187 (241)
T PRK14024 111 PEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREV---CA 187 (241)
T ss_pred HHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHH---Hh
Confidence 00000 0 00 00111 1223333333 33
Q ss_pred hcCCcEEecCCCCCHHHHHHHHHh---CCCEEEeccccc
Q 010640 349 QSGVPVIADGGISNSGHIVKALVL---GASTVMMGSFLA 384 (505)
Q Consensus 349 ~~~ipvIa~GGI~~~~di~kal~l---GA~~V~~G~~f~ 384 (505)
..++|||++|||.+..|+.+++.+ ||++|++|+.|.
T Consensus 188 ~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 188 RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 457999999999999999999764 999999999985
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-06 Score=82.73 Aligned_cols=177 Identities=17% Similarity=0.162 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+..+.++.+.+.+++.+-++|- ...-+.-...+.++.... ...-.+.++..+. ..+.++.+++.|++
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~--------~~~~~l~v~GGi~----~~~~~~~~~~~Ga~ 100 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIE--------AVGVPVQLGGGIR----SAEDAASLLDLGVD 100 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHH--------HcCCcEEEcCCcC----CHHHHHHHHHcCCC
Confidence 5667778888899999988875 333343333333333211 1222345555553 44777888899999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-----------cc------cCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-----------GN------VVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-----------g~------V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+++....-. ..+.+..+.+.++.-.+++ ++ ....+.++.+.+.|++.+.+-. .
T Consensus 101 ~v~iGs~~~~---~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~------~ 171 (241)
T PRK13585 101 RVILGTAAVE---NPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTN------V 171 (241)
T ss_pred EEEEChHHhh---ChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEe------e
Confidence 9988543221 1234555556653211211 11 1235678888999999986521 0
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.-.. ..+....+.+++ +..++||++.|||++..|+.+++.+||++|++|+.|..
T Consensus 172 ~~~g~~-~g~~~~~i~~i~---~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 172 DVEGLL-EGVNTEPVKELV---DSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred cCCCCc-CCCCHHHHHHHH---HhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 111000 113444454444 34579999999999999999999999999999999854
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.3e-06 Score=81.02 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=119.6
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+.....+.+..+.+.+.|...+-|..+ ..+-|= .+||....... .+++....-.. +. ..+..+.
T Consensus 66 i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~--~~~l~~v~~~v-----------~iPvl~kdfi~-~~-~qi~~a~ 130 (260)
T PRK00278 66 IREDFDPVEIAKAYEAGGAACLSVLTDERFFQGS--LEYLRAARAAV-----------SLPVLRKDFII-DP-YQIYEAR 130 (260)
T ss_pred cCCCCCHHHHHHHHHhCCCeEEEEecccccCCCC--HHHHHHHHHhc-----------CCCEEeeeecC-CH-HHHHHHH
Confidence 344567788888899999988888766 555554 34444433211 12222221111 12 3678888
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++|+|++.+..+.-......+.++..++. +..+++ ++.+.++++.+.++|+|.|-+. .+....+ .+.+
T Consensus 131 ~~GAD~VlLi~~~l~~~~l~~li~~a~~l--Gl~~lv-evh~~~E~~~A~~~gadiIgin--------~rdl~~~-~~d~ 198 (260)
T PRK00278 131 AAGADAILLIVAALDDEQLKELLDYAHSL--GLDVLV-EVHDEEELERALKLGAPLIGIN--------NRNLKTF-EVDL 198 (260)
T ss_pred HcCCCEEEEEeccCCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHHcCCCEEEEC--------CCCcccc-cCCH
Confidence 99999998876552223455666666554 677777 8899999999999999988543 1222212 2334
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
..+.++....+ ..+|+|+-|||.++.|+.+++.+||++|.+|+.+..+
T Consensus 199 ~~~~~l~~~~p-~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 199 ETTERLAPLIP-SDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 44444444332 1469999999999999999999999999999998754
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=6e-06 Score=79.89 Aligned_cols=178 Identities=23% Similarity=0.254 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..++++.+.+.+.+.+-|+|- +..-|--.--++++.... .....+.++..+. ..+.++.+.+.|
T Consensus 29 ~~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~--------~~~~pv~~~GGI~----~~ed~~~~~~~G 96 (233)
T PRK00748 29 SDDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVK--------AVDIPVQVGGGIR----SLETVEALLDAG 96 (233)
T ss_pred cCCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHH--------HCCCCEEEcCCcC----CHHHHHHHHHcC
Confidence 346788888999999999999986 544442222222322211 1112344444553 456778888899
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCC-ceEEE--c-------------ccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPE-LDVIG--G-------------NVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~-~~Vi~--g-------------~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
++.+.+....-.. .+.++.+.+.++. +.+-+ + .....+.++.+.+.|++.+.+- .
T Consensus 97 a~~vilg~~~l~~---~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~------~ 167 (233)
T PRK00748 97 VSRVIIGTAAVKN---PELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT------D 167 (233)
T ss_pred CCEEEECchHHhC---HHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe------e
Confidence 9998875432111 2234444444422 11111 0 0112566788888999976542 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
.++.-...| +....+.++.+ ..++|+|+.|||.+..|+.+++..| |++|++|+.|.
T Consensus 168 ~~~~g~~~G-~d~~~i~~l~~---~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~ 224 (233)
T PRK00748 168 ISRDGTLSG-PNVEATRELAA---AVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALY 224 (233)
T ss_pred ecCcCCcCC-CCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHH
Confidence 122222233 44555555544 3469999999999999999999999 99999999985
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.4e-06 Score=79.27 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-C--eeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-G--ERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g--~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
.+..++++.+.+.+.+.+-|+|= + ..-|. ..++++.... ..+..+.++..+. ..+.++.+.+.
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~--n~~~~~~i~~--------~~~~pv~~~ggi~----~~~d~~~~~~~ 95 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGREP--LFELISNLAE--------ECFMPLTVGGGIR----SLEDAKKLLSL 95 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCCCC--CHHHHHHHHH--------hCCCCEEEECCCC----CHHHHHHHHHc
Confidence 36788899999999999999974 2 11121 1222332211 1122344554543 44566667888
Q ss_pred CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--c---------------------ccCCHHHHHHHHHcCCCEEEE
Q 010640 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--G---------------------NVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 260 Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g---------------------~V~t~e~a~~l~~aGad~I~v 316 (505)
|++.+.+....-. ..+.++.+.+.++.-.+++ . .....+.++.+.++|+|.+.+
T Consensus 96 G~~~vilg~~~l~---~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i 172 (232)
T TIGR03572 96 GADKVSINTAALE---NPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILL 172 (232)
T ss_pred CCCEEEEChhHhc---CHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999988543211 1345566666653211221 1 011357778999999999987
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH-HHHhCCCEEEecccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK-ALVLGASTVMMGSFL 383 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k-al~lGA~~V~~G~~f 383 (505)
.. .++.-...| +.+..+..++ +..++||+++|||.+..|+.+ +...||++|++|++|
T Consensus 173 ~~------i~~~g~~~g-~~~~~~~~i~---~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 173 NS------IDRDGTMKG-YDLELIKTVS---DAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred eC------CCccCCcCC-CCHHHHHHHH---hhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 52 011111112 3344444443 345799999999999999999 667999999999998
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.5e-06 Score=79.39 Aligned_cols=122 Identities=30% Similarity=0.347 Sum_probs=80.3
Q ss_pred HHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEEcccCCHHHHHH-HHHcCCCEEEEccCCcceeeccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQN-LIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~-l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+..+.+.|+|.+.++..++.. ....+.++.+++.+++.+++++-....+.... +.+.|+|++.+..+.++....
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~---- 152 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGR---- 152 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCc----
Confidence 457788999999998776531 23567778888877677887753322221122 678999999886432211110
Q ss_pred ccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 331 AVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 331 g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
. +...............++||+++|||.++.++.+++.+|||+|++|+
T Consensus 153 --~-~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 153 --D-AVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred --c-CchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 0 11101111222233457999999999999999999999999999996
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.3e-07 Score=96.23 Aligned_cols=171 Identities=17% Similarity=0.219 Sum_probs=120.4
Q ss_pred CeeeeeeecCcccccceEEEccch------hhhHHHHHHHHHHcCCeeEEcC-CCCHHHHHHHHHhhhccCCccccCCCe
Q 010640 42 AVSLSTRLTRNIDLSLPCVASPMD------TVTEDYMAAAMAALGGIGIVHS-NCTAADQARLVVSAKSRRVPIFSSSLD 114 (505)
Q Consensus 42 ~~~~~~~lt~~~~l~~Pli~a~m~------~vt~~~ma~al~~~Gg~g~i~~-~~~~~~~~~~v~~v~~~~~~~~~~p~~ 114 (505)
-|-+-.||||.+++.+|+|.+.|- ......++-+.-..+|.+++.. +...+.....+.+..+. ++.-
T Consensus 485 lVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~~t~~~~v~~p~~~------~~~L 558 (696)
T KOG0475|consen 485 LVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFSSTLAIPVMEPCRS------ESCL 558 (696)
T ss_pred EEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccccchhhhhhchhcC------chhh
Confidence 345669999999999999998872 2222335556666777776631 11111122222222222 2211
Q ss_pred eEeCC-CCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc--c-----------------c---------cc
Q 010640 115 VFKAP-DGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN--L-----------------S---------DN 162 (505)
Q Consensus 115 ~~v~~-~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~--~-----------------~---------~~ 162 (505)
.++.. .++++|...+|++ .+ +||+-+ ++.++++|+|.++|+.. . . ..
T Consensus 559 ~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 559 IVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred eeccccceeHHHHHHHHhhcccCCceEEEc-cccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 34444 4899999999999 77 887643 12788999999999741 0 0 12
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
...++++|.. .+.++...++.+.+++++++.+++.+.|..+|++.|+||++|++...
T Consensus 638 ~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVTKNGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEccCCeeEeeeehHHHHHhh
Confidence 2357888988 89999999999999999999999999998889999999999999864
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-06 Score=78.73 Aligned_cols=110 Identities=26% Similarity=0.366 Sum_probs=90.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
.+++..+.++.+.+.|++++.++.... ...+.++.+++.+|++.+.+|++.+.+.+..+.++|+|++..+.
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~------ 84 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG------ 84 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC------
Confidence 355677889999999999999987644 36778899999988788999999999999999999999994321
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.. .++.+.++..+.+++. |+.|..++.+|+.+|||.+++
T Consensus 85 ----------~~----~~~~~~~~~~~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 85 ----------LD----PEVVKAANRAGIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred ----------CC----HHHHHHHHHcCCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 00 2345556667899999 999999999999999999997
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.9e-06 Score=86.43 Aligned_cols=137 Identities=24% Similarity=0.245 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhC-CCceEEEccc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTY-PELDVIGGNV----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~-~~~~Vi~g~V----- 297 (505)
++.+.++.+.++|.|.|.|+..+|+ .....+.++.+++.+ ++.+|.++--
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 3666777888899999999886542 122467888888887 4667776311
Q ss_pred ---CCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 298 ---VTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 298 ---~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.+.+ .++.+.++|+|+|.++.+...... ........+....+..+.+..+..++||++.|||.++.++.+++
T Consensus 222 ~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~-~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 222 PGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPP-PIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHH
Confidence 1333 367788899999998743221100 00000000111122233333444579999999999999999999
Q ss_pred Hh-CCCEEEecccccC
Q 010640 371 VL-GASTVMMGSFLAG 385 (505)
Q Consensus 371 ~l-GA~~V~~G~~f~~ 385 (505)
.. |||+|++|++|+.
T Consensus 301 ~~g~aD~V~igR~~la 316 (327)
T cd02803 301 AEGKADLVALGRALLA 316 (327)
T ss_pred HCCCCCeeeecHHHHh
Confidence 98 7999999999875
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-05 Score=77.61 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
.+..+.++.+.+.+.+.+-|+|= +...| .-.++++.... .....+.++..+. ..+.++.+.+.
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~--~n~~~i~~i~~--------~~~~pv~~gGGi~----s~~d~~~l~~~ 95 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGSE--PNYELIENLAS--------ECFMPLCYGGGIK----TLEQAKKIFSL 95 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCCc--ccHHHHHHHHH--------hCCCCEEECCCCC----CHHHHHHHHHC
Confidence 36788899999999999999973 22222 22333433321 1112234444443 34667777788
Q ss_pred CccEEEEeCCCCCchhHHHHHHHHHHhCCC--ceEEE----c----------------ccCCHHHHHHHHHcCCCEEEEc
Q 010640 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPE--LDVIG----G----------------NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 260 Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~--~~Vi~----g----------------~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|++.+.+.+..-. ..+.++.+.+.++. +.+-+ | .....+.++.+.+.|++.+.+-
T Consensus 96 G~~~vvigs~~~~---~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~ 172 (258)
T PRK01033 96 GVEKVSINTAALE---DPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLN 172 (258)
T ss_pred CCCEEEEChHHhc---CHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEE
Confidence 9999988543211 12445555555421 21111 1 1123466788889999988662
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HhCCCEEEecccccC
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL-VLGASTVMMGSFLAG 385 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal-~lGA~~V~~G~~f~~ 385 (505)
..++.-..-| |..+.+.++.+ ..++|||++|||.+.+|+.+++ ..|+++|.+|++|..
T Consensus 173 ------~i~~~G~~~G-~d~~~i~~~~~---~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 173 ------SIDRDGTMKG-YDLELLKSFRN---ALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred ------ccCCCCCcCC-CCHHHHHHHHh---hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 0111111112 45555555544 3579999999999999999999 899999999999954
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-05 Score=76.68 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-Ce--eeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GE--RLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~--l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
....+.++.+.+.+.+.+-++|= +. --|. --++++... ...+..+.++..+. ..+.++.+++.
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~--~~~~i~~i~--------~~~~~pv~~~GGI~----s~~d~~~~l~~ 92 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEGRET--MLDVVERVA--------EEVFIPLTVGGGIR----SLEDARRLLRA 92 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCcccccCcc--cHHHHHHHH--------HhCCCCEEEeCCCC----CHHHHHHHHHc
Confidence 36778888999999999998874 21 1111 111222221 11122344444543 34666777788
Q ss_pred CccEEEEeCCCCCchhHHHHHHHHHHhCCC--ceEEE--c------------------ccCCHHHHHHHHHcCCCEEEEc
Q 010640 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPE--LDVIG--G------------------NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 260 Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~--~~Vi~--g------------------~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|++.+.+....-.. .+.+..+.+.++. +.+-+ + ...+.+.++.+.+.|+|++.+.
T Consensus 93 G~~~v~ig~~~~~~---p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~ 169 (243)
T cd04731 93 GADKVSINSAAVEN---PELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLT 169 (243)
T ss_pred CCceEEECchhhhC---hHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEe
Confidence 99998875433221 2334444444421 22111 1 2234567788999999999874
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
. .++.-..-| +....+..+ .+..++|||++|||.++.|+.+++.. ||++|++|++|.
T Consensus 170 ~------i~~~g~~~g-~~~~~i~~i---~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~ 227 (243)
T cd04731 170 S------MDRDGTKKG-YDLELIRAV---SSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred c------cCCCCCCCC-CCHHHHHHH---HhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence 1 001000111 223333333 33457999999999999999999997 999999999984
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.1e-06 Score=79.66 Aligned_cols=134 Identities=22% Similarity=0.347 Sum_probs=89.7
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc----
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM---- 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~---- 318 (505)
.+..+.++.+.+.|++.+.+ |. .........+.++.+.+.+ .+|+.+ |++.+.++++.+.++|++.++++.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 45778888888889999866 33 3212234678888888887 688877 688999999999999999998864
Q ss_pred ------------CC-----------c-cee----------------------------ecc-cccccC-cChHHHHHHHH
Q 010640 319 ------------GS-----------G-SIC----------------------------TTQ-EVCAVG-RGQATAVYKVS 344 (505)
Q Consensus 319 ------------g~-----------g-~~~----------------------------~~~-~~~g~g-~p~~~~l~~v~ 344 (505)
|. | .+. .+. ...|.. .|.++.+..++
T Consensus 108 ~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~ 187 (229)
T PF00977_consen 108 DPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLA 187 (229)
T ss_dssp CCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHH
T ss_pred chhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHH
Confidence 11 1 000 000 011221 14444444443
Q ss_pred HHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 345 SIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 345 ~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ ..++|+|++|||.+..|+.++...|+++|.+|++|.
T Consensus 188 ~---~~~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 188 E---AVNIPVIASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp H---HHSSEEEEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred H---HcCCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 3 347999999999999999999999999999999983
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.2e-06 Score=82.65 Aligned_cols=131 Identities=19% Similarity=0.140 Sum_probs=90.6
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCC-CceEEEc---ccC----CHH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYP-ELDVIGG---NVV----TMY 301 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~-~~~Vi~g---~V~----t~e 301 (505)
.++...+.+..+.+.|.|.|.++..+. ++....+.++.+++.++ ++||.++ +.. ..+
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~ 152 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFE 152 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHH
Confidence 344566667778888999999987542 12345667777788764 5888886 222 245
Q ss_pred HHHHHHHcCCCEEEEccCCcceeecccccccCcC--hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEE
Q 010640 302 QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVM 378 (505)
Q Consensus 302 ~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~ 378 (505)
-++.+.++|+|+|.|.. ... ..++..| ....+..+.+ ..++|||+.|||.++.|+.+++. -|||+||
T Consensus 153 ~a~~l~~~Gvd~i~Vh~--Rt~-----~~~y~g~~~~~~~i~~ik~---~~~iPVi~nGdI~t~~da~~~l~~~g~DgVm 222 (312)
T PRK10550 153 IADAVQQAGATELVVHG--RTK-----EDGYRAEHINWQAIGEIRQ---RLTIPVIANGEIWDWQSAQQCMAITGCDAVM 222 (312)
T ss_pred HHHHHHhcCCCEEEECC--CCC-----ccCCCCCcccHHHHHHHHh---hcCCcEEEeCCcCCHHHHHHHHhccCCCEEE
Confidence 66888899999998842 111 1122222 2334444443 45799999999999999999995 7899999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+.++.
T Consensus 223 iGRg~l~ 229 (312)
T PRK10550 223 IGRGALN 229 (312)
T ss_pred EcHHhHh
Confidence 9998875
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=79.01 Aligned_cols=133 Identities=20% Similarity=0.338 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC---CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ---GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~---g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~--- 320 (505)
+..+.++.+.+.|++.+.++.-. ......++.++.+++.. ++|+++ |++.+.++++.+...|++.+.++...
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~ 109 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVAN 109 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence 46788888889999998775422 12345688888888876 788877 78999999999999999999886410
Q ss_pred -----------c--c--eeec-----------------------c------c----------ccccCc------ChHHHH
Q 010640 321 -----------G--S--ICTT-----------------------Q------E----------VCAVGR------GQATAV 340 (505)
Q Consensus 321 -----------g--~--~~~~-----------------------~------~----------~~g~g~------p~~~~l 340 (505)
| . .+.. . . ..+++. +.+..+
T Consensus 110 p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i 189 (253)
T PRK02083 110 PELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELT 189 (253)
T ss_pred cHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHH
Confidence 0 0 0000 0 0 000000 112233
Q ss_pred HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 341 YKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 341 ~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
. +.++..++|||++|||.+..|+.+++.. ||++|++|++|.
T Consensus 190 ~---~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~ 231 (253)
T PRK02083 190 R---AVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFH 231 (253)
T ss_pred H---HHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence 3 3333457999999999999999999975 999999999984
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=76.61 Aligned_cols=125 Identities=23% Similarity=0.246 Sum_probs=79.3
Q ss_pred cHHHHHHHHHHc-CccEEEEeC--CCC-CchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEE--c-cC
Q 010640 248 SDKERLEHLVKA-GVNVVVLDS--SQG-NSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRV--G-MG 319 (505)
Q Consensus 248 ~~~e~~~~liea-Gad~I~i~~--~~g-~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v--~-~g 319 (505)
+....++...|. +-++|-+.. ... ......+.++..+... .+..++.=...++..++++.++|+++|.. + +|
T Consensus 77 eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIG 156 (250)
T PRK00208 77 EAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIG 156 (250)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCC
Confidence 344444444443 566664432 111 1123444444444432 14444422567899999999999999944 1 22
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.|.|+.....+..+.+. .++|||++|||.+++|+.+|+.+|||+|++|+.+..
T Consensus 157 ----------sg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 157 ----------SGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAV 209 (250)
T ss_pred ----------CCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhC
Confidence 22344344445444442 479999999999999999999999999999999863
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-05 Score=76.06 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=88.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
+.++..+.++.+++.|+.++++..... ...+.++.+++.++ ++.|.+|+|.+.++++.+.++|++++....
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----- 91 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----- 91 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC-----
Confidence 345677889999999999999976433 45678888888886 478899999999999999999999995421
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. . .++.+.+...+++++. |+.|+.++.+|..+|||.+.+
T Consensus 92 ---~--------~----~~v~~~~~~~~~~~~~--G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 92 ---T--------D----PEVIRRAVALGMVVMP--GVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred ---C--------C----HHHHHHHHHCCCcEEc--ccCCHHHHHHHHHcCCCEEEE
Confidence 0 0 1334556667899999 799999999999999999986
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=7e-06 Score=83.69 Aligned_cols=136 Identities=15% Similarity=0.108 Sum_probs=86.1
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---cC---C----
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---VV---T---- 299 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V~---t---- 299 (505)
.++...+.++.+.+.|+|.|.++..+. ++....+.++.+++.. +.||.++. +. +
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~ 153 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFL 153 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHH
Confidence 345566677777778999999986432 1234567777787775 67776642 11 1
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcC--hHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
.+-++.+.++|+|++.+....+.........+...| ....+..+ .+.. ++|||+.|||.++.|+.+++. |||+
T Consensus 154 ~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v---~~~~~~iPVI~nGgI~s~eda~~~l~-~aDg 229 (333)
T PRK11815 154 CDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRL---KRDFPHLTIEINGGIKTLEEAKEHLQ-HVDG 229 (333)
T ss_pred HHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHH---HHhCCCCeEEEECCcCCHHHHHHHHh-cCCE
Confidence 344677888999999874211100000000000111 12333333 3333 699999999999999999997 7999
Q ss_pred EEecccccC
Q 010640 377 VMMGSFLAG 385 (505)
Q Consensus 377 V~~G~~f~~ 385 (505)
||+|+.++.
T Consensus 230 VmIGRa~l~ 238 (333)
T PRK11815 230 VMIGRAAYH 238 (333)
T ss_pred EEEcHHHHh
Confidence 999998764
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-05 Score=77.78 Aligned_cols=178 Identities=17% Similarity=0.181 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..+.++.+.+.+.+.+-|+|= +.-.+-=.--++++... +..+..+.++..+. ..+.++.+++.|
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~--------~~~~~pv~~~GGi~----s~~d~~~~~~~G 96 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTA--------ETVFIPLTVGGGIK----SIEDVDKLLRAG 96 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHH--------HhcCCCEEEECCCC----CHHHHHHHHHcC
Confidence 346778889999999999999974 22100001111222221 11122344544553 456777788899
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE------c-------------------ccCCHHHHHHHHHcCCCEEE
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG------G-------------------NVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~------g-------------------~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+.+.+..-. ..+.++.+.+.|+.-.+++ | +....+.++.+.++|++.|.
T Consensus 97 a~~vivgt~~~~---~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~ii 173 (254)
T TIGR00735 97 ADKVSINTAAVK---NPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEIL 173 (254)
T ss_pred CCEEEEChhHhh---ChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEE
Confidence 999988543211 1345555666663111111 1 11235667889999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
+.. ..+.-.. +.+.+..+..+++ ..++|||++|||++..|+.+++..| |++|++|++|.
T Consensus 174 vt~------i~~~g~~-~g~~~~~~~~i~~---~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~ 233 (254)
T TIGR00735 174 LTS------MDKDGTK-SGYDLELTKAVSE---AVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFH 233 (254)
T ss_pred EeC------cCcccCC-CCCCHHHHHHHHH---hCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHh
Confidence 741 0111111 1234444444443 4579999999999999999999999 99999999883
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-07 Score=84.95 Aligned_cols=116 Identities=14% Similarity=0.139 Sum_probs=99.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc-ccc--cccccccccccCCCc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN-LSD--NKVKIFDYMRDCSSN 176 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~-~~~--~~~~v~~im~~~~~~ 176 (505)
++.++|++..+.++++.+.++.+++..+.+ .+ |||+.++ ...+.||+-.+||+. ... ....+.++.+ +.
T Consensus 68 ~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed--kD~v~GIL~AKDLL~~~~~~~~~F~i~~lLR---Pa 142 (293)
T COG4535 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED--KDHVEGILLAKDLLPFMRSDAEPFDIKELLR---PA 142 (293)
T ss_pred hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC--chhhhhhhhHHHHHHHhcCCcccccHHHhcc---cc
Confidence 566788887777899999999999999988 77 9999764 678999999999973 222 2345677766 68
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+.++++-.+...++-|+..+-+...|||+ |.+-|+||.+||++.+..
T Consensus 143 v~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 143 VVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred eecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhc
Confidence 89999999999999999999999999999 999999999999998653
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-05 Score=75.62 Aligned_cols=127 Identities=22% Similarity=0.202 Sum_probs=80.4
Q ss_pred HHHHHHHHHHc-CccEEEEeC--CCC-CchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 249 DKERLEHLVKA-GVNVVVLDS--SQG-NSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 249 ~~e~~~~liea-Gad~I~i~~--~~g-~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
....++...+. +-++|-+.. ... ......+.++..+... .+..++.=...++..++.+.++|++++..- |+.
T Consensus 78 Av~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl---g~p 154 (248)
T cd04728 78 AVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL---GSP 154 (248)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC---CcC
Confidence 44444445554 567764432 211 1123444454444432 144444225679999999999999999441 010
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.-.|.|+.....+..+++. .++|||++|||.+++|+.+|+.+||++|++||.+..
T Consensus 155 ----IGsg~Gi~~~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 155 ----IGSGQGLLNPYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred ----CCCCCCCCCHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 0122344445555544442 469999999999999999999999999999999863
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-06 Score=89.27 Aligned_cols=107 Identities=13% Similarity=0.100 Sum_probs=90.5
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------ccc---cccccccccCCCceEec
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------DNK---VKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------~~~---~~v~~im~~~~~~~~v~ 180 (505)
..+..+.++.+|+++|.+ ++ +||+++ .|+.+|.++..|+.... ... ......+...+.++++.
T Consensus 240 ~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~ 316 (381)
T KOG1764|consen 240 ASISEDTPVIEALKIMSERRISALPVVDE---NGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR 316 (381)
T ss_pred eeecCCCcHHHHHHHHHhcCcCcceEEcC---CCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence 789999999999999999 77 999998 88889999999997332 111 12233344555789999
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCC
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~ 224 (505)
++.++.++++.|..++++++.|||+ |.++|+||..|++......
T Consensus 317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 9999999999999999999999999 9999999999999987653
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-05 Score=75.76 Aligned_cols=132 Identities=21% Similarity=0.268 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHHcCccEEEE-eCC--CCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC--
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DSS--QGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS-- 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~~--~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~-- 320 (505)
.+..+.++.+.+.|++.+++ |.. ........+.++.+.+.+ .|+.+ |++.+.++++.+.++|++.++++...
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~ 107 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhC
Confidence 35778888888999998866 443 222234577888887775 57765 68899999999999999998876310
Q ss_pred -----------------------ccee----------------------------ecc-cccccC-cChHHHHHHHHHHH
Q 010640 321 -----------------------GSIC----------------------------TTQ-EVCAVG-RGQATAVYKVSSIA 347 (505)
Q Consensus 321 -----------------------g~~~----------------------------~~~-~~~g~g-~p~~~~l~~v~~~~ 347 (505)
|.+. .+. ...|.. .|.++.+..+++
T Consensus 108 ~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~-- 185 (241)
T PRK14114 108 DPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAI-- 185 (241)
T ss_pred CHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHH--
Confidence 0000 000 011111 144444444433
Q ss_pred hhcCCcEEecCCCCCHHHHHHHHHh-----C-CCEEEecccc
Q 010640 348 AQSGVPVIADGGISNSGHIVKALVL-----G-ASTVMMGSFL 383 (505)
Q Consensus 348 ~~~~ipvIa~GGI~~~~di~kal~l-----G-A~~V~~G~~f 383 (505)
..++|||++||+++..|+.++..+ | +++|.+|++|
T Consensus 186 -~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al 226 (241)
T PRK14114 186 -EAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAF 226 (241)
T ss_pred -HCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHH
Confidence 357999999999999999999997 6 9999999998
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-05 Score=80.41 Aligned_cols=135 Identities=13% Similarity=0.111 Sum_probs=86.6
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc---cC---C----
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN---VV---T---- 299 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~---V~---t---- 299 (505)
.++...+.++.+.+.|+|.|.++..+.. +....+.++.+++.. ++||.+|- .. +
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~ 143 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFL 143 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHH
Confidence 3445566666666779999999875421 133567777777765 67888863 21 1
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccc---cCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA---VGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g---~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
.+.++.+.++|+++|.+- +.... .+...+ ...+.. ....+.+..+.. ++|||+.|||.+.+|+.+.+. |||
T Consensus 144 ~~~~~~l~~~G~~~itvH--gRt~~-~qg~sg~~~~~~~~~-~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~d 218 (318)
T TIGR00742 144 CDFVEIVSGKGCQNFIVH--ARKAW-LSGLSPKENREIPPL-RYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVD 218 (318)
T ss_pred HHHHHHHHHcCCCEEEEe--CCchh-hcCCCccccccCCch-hHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCC
Confidence 234678889999999773 22110 000110 011211 112233443444 699999999999999999996 999
Q ss_pred EEEecccccC
Q 010640 376 TVMMGSFLAG 385 (505)
Q Consensus 376 ~V~~G~~f~~ 385 (505)
+||+|+.++.
T Consensus 219 gVMigRgal~ 228 (318)
T TIGR00742 219 GVMVGREAYE 228 (318)
T ss_pred EEEECHHHHh
Confidence 9999998764
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.1e-05 Score=72.31 Aligned_cols=122 Identities=25% Similarity=0.271 Sum_probs=84.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEEccCCcceeeccc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQE 328 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~ 328 (505)
..++.+.++|++.+.++...+. ....+.++.+++. ++++++ -+..|++++..+...|+|++.+..+ . ...
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~-~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~--~---~~~ 139 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPL-STIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRG--I---DAQ 139 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCH-HHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCc--c---ccc
Confidence 4567889999999999775432 2345566666665 677764 4777888888888899999877311 0 000
Q ss_pred ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+ .......+..+.+. .++|++++|||. +.++.+++..||+++.+|+.+..
T Consensus 140 ~~~-~~~~~~~i~~~~~~---~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 140 AAG-GWWPEDDLKKVKKL---LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred ccC-CCCCHHHHHHHHhh---cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhcC
Confidence 111 11233444444332 569999999995 99999999999999999998753
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.1e-05 Score=71.70 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+..+.++.+.+.+...+-+||= |-..|--.-.++++.+.. ..+..+.+|..+. ..+.++.++++|++
T Consensus 32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~--------~~~~~vQvGGGIR----s~~~v~~ll~~G~~ 99 (241)
T COG0106 32 DPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILE--------ATDVPVQVGGGIR----SLEDVEALLDAGVA 99 (241)
T ss_pred CHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHH--------hCCCCEEeeCCcC----CHHHHHHHHHCCCC
Confidence 3455566677789999999985 665565555566555432 1234567777775 56889999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc------cc-----------CCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG------NV-----------VTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g------~V-----------~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+.+.+.. ....++++++.+.|+ -.|+++ .+ .-.+.++++.+.|+..+..-
T Consensus 100 rViiGt~a---v~~p~~v~~~~~~~g-~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~T-------- 167 (241)
T COG0106 100 RVIIGTAA---VKNPDLVKELCEEYG-DRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYT-------- 167 (241)
T ss_pred EEEEecce---ecCHHHHHHHHHHcC-CcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEE--------
Confidence 99885532 123466777777775 333332 11 12456788888999888542
Q ss_pred ccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 326 TQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
.-...|. ..|....+.++++ ..++|+|+||||.+-.|+.++..+ |..+|.+|++|.
T Consensus 168 dI~~DGtl~G~n~~l~~~l~~---~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy 225 (241)
T COG0106 168 DISRDGTLSGPNVDLVKELAE---AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALY 225 (241)
T ss_pred ecccccccCCCCHHHHHHHHH---HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence 1111111 1255666655544 457999999999999999999999 999999999883
|
|
| >KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-07 Score=95.36 Aligned_cols=164 Identities=15% Similarity=0.156 Sum_probs=119.7
Q ss_pred eeecCcccccceEEEccch-----hhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCC
Q 010640 47 TRLTRNIDLSLPCVASPMD-----TVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDG 121 (505)
Q Consensus 47 ~~lt~~~~l~~Pli~a~m~-----~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~ 121 (505)
-|+| +..+..|+|..-|- -.+.+.+.-...+..|+++++.+..+.... ....++|..+. ++++.-.
T Consensus 529 ~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~------L~a~ev~~~pv--i~l~~~e 599 (762)
T KOG0474|consen 529 LELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRN------LTAGEVMSKPV--ICLNRVE 599 (762)
T ss_pred HHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhh------hhHhhhccCCe--EEEechh
Confidence 4666 67778888776652 234455555566677888887665432221 22334555555 7899999
Q ss_pred CHHHHHHHhcC-Ce--EEEEeCCC--CCCeEEEEEeccccc-------cc-c----------------------------
Q 010640 122 CINDANDFDGS-NY--VFVTESGT--RRSRILGYVTKSDWE-------NL-S---------------------------- 160 (505)
Q Consensus 122 tv~~a~~~~~~-~~--~pVvd~~~--~~g~lvGivt~~Dl~-------~~-~---------------------------- 160 (505)
.+..+.++++. .| |||+|+-. +.+++.|+|-++.+. +. .
T Consensus 600 kV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv 679 (762)
T KOG0474|consen 600 KVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDV 679 (762)
T ss_pred hHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhh
Confidence 99999999999 76 99999621 125788888766652 00 0
Q ss_pred -------ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 161 -------DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 161 -------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+....+..+|++ .+.++++++++..+..+|++-+++++.||++ ++++|++||+|+....
T Consensus 680 ~lt~~e~~~yvDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 680 HLTSEEMEMYVDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred hcchHhHhhccccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 012356678888 9999999999999999999999999999999 9999999999998654
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.6e-05 Score=71.87 Aligned_cols=133 Identities=18% Similarity=0.217 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC-----
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS----- 320 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~----- 320 (505)
.++..+.++.+++.|++++.+...... ..+.++.+++..+.+.+..+.+.+.+.++.+.++|+|++..+.-+
T Consensus 23 ~~~~~~~~~~~~~~Gv~~vqlr~k~~~---~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~~~~~~ 99 (187)
T PRK07455 23 LELGLQMAEAVAAGGMRLIEITWNSDQ---PAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVDPELIE 99 (187)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCC---HHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCCHHHHH
Confidence 455778899999999999999654332 345666666666556677788888899999999999999654210
Q ss_pred -----------cceeec-cc-----ccccC----cChHH--HHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 321 -----------GSICTT-QE-----VCAVG----RGQAT--AVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 321 -----------g~~~~~-~~-----~~g~g----~p~~~--~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
| +.+ .+ ..|.. .|+-. -+..+...+... ++|+++.||| +..++...+++||++
T Consensus 100 ~~~~~~~~~i~G--~~t~~e~~~A~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~ 176 (187)
T PRK07455 100 AAVAQDIPIIPG--ALTPTEIVTAWQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIA 176 (187)
T ss_pred HHHHcCCCEEcC--cCCHHHHHHHHHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeE
Confidence 1 111 00 00000 12210 011222223333 4999999999 789999999999999
Q ss_pred EEeccccc
Q 010640 377 VMMGSFLA 384 (505)
Q Consensus 377 V~~G~~f~ 384 (505)
|.+|+.+.
T Consensus 177 vav~s~i~ 184 (187)
T PRK07455 177 VGLSGQLF 184 (187)
T ss_pred EEEehhcc
Confidence 99999874
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.5e-05 Score=75.65 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=92.1
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCCc-
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGSG- 321 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~g- 321 (505)
.+..+.++.+.+.|++.+++ |. ..++ ....+.++.+.+.. .+|+.+ |++.+.++++.+..+|++.++++...-
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~~~-~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIMGR-GDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccccCC-CccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 35778999999999999866 33 2233 23467788887765 578866 688999999999999999988763211
Q ss_pred --------------ceeecccc-cc------cCc-----------------------------ChHHHHHHHHHHHhhcC
Q 010640 322 --------------SICTTQEV-CA------VGR-----------------------------GQATAVYKVSSIAAQSG 351 (505)
Q Consensus 322 --------------~~~~~~~~-~g------~g~-----------------------------p~~~~l~~v~~~~~~~~ 351 (505)
.+...-.. .+ .+. +....+ .+.++..+
T Consensus 113 ~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~---~~i~~~~~ 189 (233)
T cd04723 113 SDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELL---ERLAARAD 189 (233)
T ss_pred chHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHH---HHHHHhcC
Confidence 10000000 00 001 122222 23333457
Q ss_pred CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 352 VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 352 ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+|++++|||++..|+.+++.+||++|.+|++|.
T Consensus 190 ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~ 222 (233)
T cd04723 190 IPVIAAGGVRSVEDLELLKKLGASGALVASALH 222 (233)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHH
Confidence 999999999999999999999999999999883
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=87.53 Aligned_cols=191 Identities=20% Similarity=0.236 Sum_probs=121.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCC---C---CC------
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNL---G---KG------ 229 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~---~---~~------ 229 (505)
..++.++|++ +++++++++++.++++.|.+++++.+||+|+ |+++|+||..|+.+....... . .+
T Consensus 67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i~ 144 (546)
T PRK14869 67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLENII 144 (546)
T ss_pred CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHHH
Confidence 3578999998 9999999999999999999999999999998 999999999999886443210 0 00
Q ss_pred -------------ccCCCCcceEEEeec-------------CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHH
Q 010640 230 -------------TVGPDGKWMVGAAIG-------------TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYA 283 (505)
Q Consensus 230 -------------~~d~~~~l~v~a~i~-------------~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l 283 (505)
.....+++.+++... ...+..+.+..+++.|+.++.+......+..+++. .
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l---a 221 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLEL---A 221 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHH---H
Confidence 111244555555421 11335566668899999999997665554443333 3
Q ss_pred HHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh---cCCcEEec-C-
Q 010640 284 KKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ---SGVPVIAD-G- 358 (505)
Q Consensus 284 ~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~---~~ipvIa~-G- 358 (505)
++. ++|++...-.+.+.++.+.+.-. |. .+-.++...- .+.-..+.++.+.... ..+||+-. |
T Consensus 222 ~~~--~i~ii~t~~dt~~t~~~l~~~~~----V~----~iM~~~~~~~--~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~ 289 (546)
T PRK14869 222 KEN--GVTVISTPYDTFTTARLINQSIP----VS----YIMTTEDLVT--FSKDDYLEDVKEVMLKSRYRSYPVVDEDGK 289 (546)
T ss_pred HhC--CCeEEEecccHHHHHHHhhcCCC----HH----HhccCCCcEE--ECCCCcHHHHHHHHHhcCCCceEEEcCCCC
Confidence 344 79999877778888877655311 11 0000000000 0111122333333322 24788874 5
Q ss_pred --CCCCHHHHHHHH
Q 010640 359 --GISNSGHIVKAL 370 (505)
Q Consensus 359 --GI~~~~di~kal 370 (505)
|+.+..|+.+..
T Consensus 290 lvGiit~~dl~~~~ 303 (546)
T PRK14869 290 VVGVISRYHLLSPV 303 (546)
T ss_pred EEEEEEHHHhhccc
Confidence 789999998854
|
|
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=85.69 Aligned_cols=119 Identities=14% Similarity=0.075 Sum_probs=96.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-cc-cccccccccccCCCce
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-SD-NKVKIFDYMRDCSSNV 177 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~~-~~~~v~~im~~~~~~~ 177 (505)
.+.|+|+..-....++.+++.+++++.+.. .| +|+..++ -+.++|++..+|+... .. .+..-.++++-..++.
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~--~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epy 278 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDD--LDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPY 278 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCC--hhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCe
Confidence 455788776665789999999999998877 66 9998653 5669999999998632 22 2234455565455899
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.+++++++.+-+..|++++.+.-.|||| |.+.|+||.+||++.+-.
T Consensus 279 FVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 279 FVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred ecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999999998653
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-06 Score=78.73 Aligned_cols=108 Identities=16% Similarity=0.207 Sum_probs=79.2
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEE
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGA 241 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a 241 (505)
+..++.++|++ +++++.+++++.++.++|.+++++..||+|+++++|++|.+|+.++........-..+.-.+-.+
T Consensus 170 Pk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~vi-- 245 (294)
T COG2524 170 PKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDDDKIVGIITLSDIAKAIANGNLDAKVSDYMRKNVI-- 245 (294)
T ss_pred CcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecCCceEEEEEHHHHHHHHHcCCccccHHHHhccCCc--
Confidence 46789999999 99999999999999999999999999999999999999999999998754321001111111111
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCc
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNS 273 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~ 273 (505)
.+...++..+.++.+...++--+.+..+.|.+
T Consensus 246 tI~eDe~i~dAir~M~~~nVGRLlV~ds~gkp 277 (294)
T COG2524 246 TINEDEDIYDAIRLMNKNNVGRLLVTDSNGKP 277 (294)
T ss_pred eEcCchhHHHHHHHHHhcCcceEEEEccCCcE
Confidence 22334456677777777788777665555543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.19 E-value=6e-06 Score=84.97 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=86.0
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEV 191 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~ 191 (505)
....++.+..++++.|.. +. ..|+|+ ++++.|+++.+++.........+.+.|.+ ...++++++++.+++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 327 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR---QNKLVGVVDVESIKQARKKAQGLQDVLID--DIYTVDAGTLLRETVRK 327 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeHHHHHHHhhcCCchhhhhcc--CCceECCCCcHHHHHHH
Confidence 345667789999999987 55 788887 89999999999986322233457788877 88899999999999999
Q ss_pred HHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 192 LEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 192 l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
|.+++.. +||+|+ |+++|+||+.+++....
T Consensus 328 ~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 328 VLKAGIK-VPVVDEDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred HHhCCCC-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 9999999 999998 99999999999999864
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-05 Score=73.61 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=77.9
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.+++.+++.. ... .++.+++.+++..|.+ ++.+.+.+..+.++|+|++..+. +..+....+.
T Consensus 66 ~~la~~~~~~gvHl~~--~~~-----~~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~----v~~t~~k~~~ 133 (201)
T PRK07695 66 VDIALLLNIHRVQLGY--RSF-----SVRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGH----VFPTDCKKGV 133 (201)
T ss_pred HHHHHHcCCCEEEeCc--ccC-----CHHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECC----CCCCCCCCCC
Confidence 4456667788776632 211 1334556566666666 68899999999999999997652 1111111111
Q ss_pred CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
....+..+.++ +...++||++.||| ++.++..++.+||++|.+|+.|..
T Consensus 134 ~~~g~~~l~~~---~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 134 PARGLEELSDI---ARALSIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCCHHHHHHH---HHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 11223444443 33457999999999 999999999999999999999864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.7e-06 Score=85.66 Aligned_cols=100 Identities=13% Similarity=0.146 Sum_probs=84.7
Q ss_pred eCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHH
Q 010640 117 KAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLE 193 (505)
Q Consensus 117 v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~ 193 (505)
..++.+..++++.|.. +. ++|+|+ +++++|+|+.+++.........+.+.+.+ ...++.+++++.+++..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 364 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GNKFVGAVSIDSLKTALTQQQGLDAALID--APLAVDAQTPLSELLSHVG 364 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CCcEEEEEeHHHHHhhhhcCCchhhhhcc--CCceeCCCCCHHHHHHHHH
Confidence 3466788999999988 66 889998 89999999999986432334467778877 7889999999999999999
Q ss_pred HCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 194 KNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 194 ~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+.... +||||+ |+++|+||+.++++.+.
T Consensus 365 ~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 365 QAPCA-VPVVDEDQQYVGIISKGMLLRALD 393 (400)
T ss_pred hCCCc-EEEECCCCcEEEEEEHHHHHHHHH
Confidence 97776 999998 99999999999999874
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.9e-05 Score=78.96 Aligned_cols=137 Identities=22% Similarity=0.200 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC-CC------------------------chhHHHHHHHHHHhCC-CceEEEcc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ-GN------------------------SSFQIEMIKYAKKTYP-ELDVIGGN----- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~-g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g~----- 296 (505)
++.+.++.+.++|.|.|.|+.++ |+ ..-..+.++.+|+..+ +.+|.++-
T Consensus 151 ~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~ 230 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhh
Confidence 36666778888999999998765 43 1345688888888873 45665531
Q ss_pred -----------------cCCHH----HHHHHHHcCCCEEEEccCCcc-eeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 297 -----------------VVTMY----QAQNLIEAGVDGLRVGMGSGS-ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 297 -----------------V~t~e----~a~~l~~aGad~I~v~~g~g~-~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..+.+ .++.+.++|+|++.++.|.-. ..+..... ..+...-+..+....+..++||
T Consensus 231 ~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~--~~~~~~~~~~~~~ik~~~~~pv 308 (382)
T cd02931 231 IKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPM--YQKKGMYLPYCKALKEVVDVPV 308 (382)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCc--cCCcchhHHHHHHHHHHCCCCE
Confidence 01333 456777799999999743211 00000000 0011111122333344467999
Q ss_pred EecCCCCCHHHHHHHHHhC-CCEEEecccccCC
Q 010640 355 IADGGISNSGHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
|+.|||.++.++.++++-| ||+|++|++|+.-
T Consensus 309 i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~lad 341 (382)
T cd02931 309 IMAGRMEDPELASEAINEGIADMISLGRPLLAD 341 (382)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhC
Confidence 9999999999999999987 9999999999753
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.3e-05 Score=71.99 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=74.0
Q ss_pred cHHHHHHHHHHc-CccEEEEeCC--C----CCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC
Q 010640 248 SDKERLEHLVKA-GVNVVVLDSS--Q----GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 248 ~~~e~~~~liea-Gad~I~i~~~--~----g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
+....++...|. +-++|-+..- . .+....++..+.+.+. +..|+.=.-.++-.+++|.++||.++.--..
T Consensus 77 EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~e--GF~VlPY~~~D~v~akrL~d~GcaavMPlgs- 153 (247)
T PF05690_consen 77 EAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKE--GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGS- 153 (247)
T ss_dssp HHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHT--T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSS-
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHCCCCEEEeccc-
Confidence 344455555555 6777755431 1 1222334444444443 4444443345788999999999999976311
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
..-.|.|+-+...+..+.+ ..++|||.|+||.++.|++.|+.+|||+|.+-|+++.+
T Consensus 154 ------PIGSg~Gi~n~~~l~~i~~---~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A 210 (247)
T PF05690_consen 154 ------PIGSGRGIQNPYNLRIIIE---RADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKA 210 (247)
T ss_dssp ------STTT---SSTHHHHHHHHH---HGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTS
T ss_pred ------ccccCcCCCCHHHHHHHHH---hcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhcc
Confidence 1123345555566655554 35799999999999999999999999999999998654
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=79.77 Aligned_cols=134 Identities=24% Similarity=0.312 Sum_probs=89.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-----------c-------------hhHHHHHHHHHHhC-CCceEEEc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-----------S-------------SFQIEMIKYAKKTY-PELDVIGG------- 295 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-----------~-------------~~~~~~i~~l~~~~-~~~~Vi~g------- 295 (505)
++.+.++.+.++|.|.|.++..+|+ . ....+.++.+|+.+ ++.+|.++
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 3566677888899999999875532 1 22478888899887 36777764
Q ss_pred -ccCCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 296 -NVVTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 296 -~V~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.-.+.+ -++.+.+.|+|+|.++.|+-. ...... .+...-+....+..+..++||++.|||.++.++.+++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~---~~~~~~--~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l 309 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVSSGGNS---PAQKIP--VGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAIL 309 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC---cccccC--CCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHH
Confidence 112344 345667789999998743211 110000 0001111222333444679999999999999999999
Q ss_pred HhC-CCEEEecccccCC
Q 010640 371 VLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~~ 386 (505)
..| ||+|++|++++.-
T Consensus 310 ~~g~aD~V~~gR~~i~d 326 (336)
T cd02932 310 ESGRADLVALGRELLRN 326 (336)
T ss_pred HcCCCCeehhhHHHHhC
Confidence 998 9999999998753
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00011 Score=69.66 Aligned_cols=122 Identities=25% Similarity=0.388 Sum_probs=84.9
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+|+..-. ..+.++.++++|+++++. .+- ..+.++..+.. +.+++.| +.|.+++..+.+.|+|++.
T Consensus 62 ~~~iGaGTV~---~~~~~~~a~~aGA~fivs--p~~----~~~v~~~~~~~--~~~~~~G-~~t~~E~~~A~~~Gad~vk 129 (206)
T PRK09140 62 RALIGAGTVL---SPEQVDRLADAGGRLIVT--PNT----DPEVIRRAVAL--GMVVMPG-VATPTEAFAALRAGAQALK 129 (206)
T ss_pred CcEEeEEecC---CHHHHHHHHHcCCCEEEC--CCC----CHHHHHHHHHC--CCcEEcc-cCCHHHHHHHHHcCCCEEE
Confidence 3566665422 447788899999999975 211 12344444433 6787776 8899999999999999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+= .+ ...| ++.+..+..... .++|+++.||| +..++...+++||++|.+|+.+.
T Consensus 130 ~F-------pa---~~~G---~~~l~~l~~~~~-~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 130 LF-------PA---SQLG---PAGIKALRAVLP-PDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred EC-------CC---CCCC---HHHHHHHHhhcC-CCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhc
Confidence 51 01 1122 333433333321 14999999999 89999999999999999999874
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00013 Score=70.43 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc-----
Q 010640 248 SDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM----- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~----- 318 (505)
+..+.++.+.+.|++.+++ |. ..+... ..+.++++.+.. ..|+.+ |++.+.++++.+.+.|++.++++.
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~~~~~-n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~ 108 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAEGVGN-NEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN 108 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcCCCcc-hHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence 4778888898999998866 33 334333 357888887742 247766 688999999999999999998864
Q ss_pred -----------CCcceeec-------cc-ccccCc---------------------------------ChHHHHHHHHHH
Q 010640 319 -----------GSGSICTT-------QE-VCAVGR---------------------------------GQATAVYKVSSI 346 (505)
Q Consensus 319 -----------g~g~~~~~-------~~-~~g~g~---------------------------------p~~~~l~~v~~~ 346 (505)
|+..+... +. ..||.. |.++.+..+.
T Consensus 109 p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~-- 186 (232)
T PRK13586 109 FNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYAR-- 186 (232)
T ss_pred HHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHH--
Confidence 11111100 00 112211 2222222221
Q ss_pred HhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 347 ~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
. ...|+|++|||++..|+.++..+|+++|.+|+++
T Consensus 187 -~-~~~~viasGGv~s~~Dl~~l~~~G~~gvivg~Al 221 (232)
T PRK13586 187 -L-IRGLKEYAGGVSSDADLEYLKNVGFDYIIVGMAF 221 (232)
T ss_pred -h-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEehhh
Confidence 1 2357999999999999999999999999999987
|
|
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.9e-06 Score=78.77 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=76.3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCcc---CCCCcc
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTV---GPDGKW 237 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~---d~~~~l 237 (505)
.+..+.++|++ ++++++.++++.++.++|++++++.|||+|+ .+++||||+.|+++...... ++..+ ...-+.
T Consensus 243 ~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p-~qrlr~~~~~~vk~ 319 (382)
T COG3448 243 GELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSP-FQRLRFLRPPTVKG 319 (382)
T ss_pred ccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcch-HHHhhccCCCcccc
Confidence 35689999999 9999999999999999999999999999999 89999999999998543211 11111 111111
Q ss_pred eEE---EeecCCccHHHHHHHHHHcCccEEEEeCCCCC
Q 010640 238 MVG---AAIGTRESDKERLEHLVKAGVNVVVLDSSQGN 272 (505)
Q Consensus 238 ~v~---a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~ 272 (505)
++. .-+.......+.+..+.++|..++.+-...|+
T Consensus 320 imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~ 357 (382)
T COG3448 320 IMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK 357 (382)
T ss_pred cccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence 111 11122334667777888888877766555543
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=70.37 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHcCccEEEE-eCC---CCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCCc-
Q 010640 248 SDKERLEHLVKAGVNVVVL-DSS---QGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGSG- 321 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~~---~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~g- 321 (505)
+..+.++.+.+. ++.+.+ +.. .|.. ...+.++.+.+.. ++|+++ |++.+.++++.+.++|++.+.++...-
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~g~~-~n~~~i~~i~~~~-~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~ 107 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFEGKP-KNLDVVKNIIRET-GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFD 107 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhcCCc-chHHHHHHHHhhC-CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcC
Confidence 466777777776 775544 443 2322 3467788887764 788876 689999999999999999998863111
Q ss_pred ------------ceeeccc-------ccccC----cChHHHHHHHHH---------------------HHhh-cCCcEEe
Q 010640 322 ------------SICTTQE-------VCAVG----RGQATAVYKVSS---------------------IAAQ-SGVPVIA 356 (505)
Q Consensus 322 ------------~~~~~~~-------~~g~g----~p~~~~l~~v~~---------------------~~~~-~~ipvIa 356 (505)
.+...-. ..||- ....+.+..+.+ ..+. .++|||+
T Consensus 108 ~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~~~~pvia 187 (228)
T PRK04128 108 LEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFWGDEEFIY 187 (228)
T ss_pred HHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhcCCCCEEE
Confidence 1111000 12221 111121111111 1111 3689999
Q ss_pred cCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 357 DGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 357 ~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+|||++..|+.++..+|+++|.+|++|
T Consensus 188 sGGv~~~~Dl~~l~~~g~~gvivg~al 214 (228)
T PRK04128 188 AGGVSSAEDVKKLAEIGFSGVIIGKAL 214 (228)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEEEhhh
Confidence 999999999999999999999999998
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=64.07 Aligned_cols=181 Identities=16% Similarity=0.148 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeec-hhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTRE-DVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~-dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+.+.++.+.+.+++.+=+=.. +.++.-++.. ++.+.... . .+..+.+-+- ..+..++++.+.+.|+
T Consensus 21 ~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~---------~-~~~~~~vhlm-v~~p~d~~~~~~~~ga 89 (229)
T PLN02334 21 NLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRK---------H-TDAPLDCHLM-VTNPEDYVPDFAKAGA 89 (229)
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHh---------c-CCCcEEEEec-cCCHHHHHHHHHHcCC
Confidence 4667788888888877665322 4444333331 22222211 0 1112222221 1124567788889999
Q ss_pred cEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-cc-CCHHHHHHHHHcC-CCEEEEccCCcceeecccccccCcChHH
Q 010640 262 NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NV-VTMYQAQNLIEAG-VDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 262 d~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V-~t~e~a~~l~~aG-ad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
|.+.+|..+.........++.+++. +..+.+. +- ...+..+.+...| +|+|.++ .+..+.....+....+.
T Consensus 90 d~v~vH~~q~~~d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~----~v~pg~~~~~~~~~~~~ 163 (229)
T PLN02334 90 SIFTFHIEQASTIHLHRLIQQIKSA--GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVM----SVEPGFGGQSFIPSMMD 163 (229)
T ss_pred CEEEEeeccccchhHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHhccCCCEEEEE----EEecCCCccccCHHHHH
Confidence 9998877631122345666666665 4444331 21 2345555555553 9998663 12222111112222333
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
-+.++++.. .++||.++||| +...+.....+||+++.+|+.+.
T Consensus 164 ~i~~~~~~~--~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 164 KVRALRKKY--PELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred HHHHHHHhC--CCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHh
Confidence 444443332 24799999999 79999999999999999999874
|
|
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.2e-05 Score=75.79 Aligned_cols=139 Identities=17% Similarity=0.137 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCC-------------------C-----chhHHHHHHHHHHhCC-CceEEEcc------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQG-------------------N-----SSFQIEMIKYAKKTYP-ELDVIGGN------ 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g-------------------~-----~~~~~~~i~~l~~~~~-~~~Vi~g~------ 296 (505)
.+.+.++.+.++|.|.|.|+..+| . .....+.++.+|+.+. +.+|.+.-
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 355667788889999999986542 1 1345788888998873 56776631
Q ss_pred --cCCHH----HHHHHHHcCCCEEEEccCCcc-eeec-ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 --VVTMY----QAQNLIEAGVDGLRVGMGSGS-ICTT-QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 --V~t~e----~a~~l~~aGad~I~v~~g~g~-~~~~-~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
-.+.+ -++.|.++|+|+|.|+.+.-. .... ........+....+..+.+..+..++||+++|+|.+..++.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~ 309 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQ 309 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 12444 356778899999998643100 0000 000000001111112223334446899999999999999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
++..| ||+|++|+.|+.-
T Consensus 310 ~l~~g~aD~V~lgR~~iad 328 (338)
T cd04733 310 ALASGAVDGIGLARPLALE 328 (338)
T ss_pred HHHcCCCCeeeeChHhhhC
Confidence 99987 9999999998753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=6.9e-05 Score=71.22 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=76.2
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+.++.+.+.|++.+++.... . ....++.++.. +..+.+ .+.|.+++..+.+.|+|+|.++. ...+....
T Consensus 72 ~~~~~a~~~gad~vh~~~~~-~---~~~~~~~~~~~--~~~~g~-~~~t~~e~~~a~~~gaD~v~~~~----~~~~~~~~ 140 (212)
T PRK00043 72 DRVDLALAVGADGVHLGQDD-L---PVADARALLGP--DAIIGL-STHTLEEAAAALAAGADYVGVGP----IFPTPTKK 140 (212)
T ss_pred ChHHHHHHcCCCEEecCccc-C---CHHHHHHHcCC--CCEEEE-eCCCHHHHHHHhHcCCCEEEECC----ccCCCCCC
Confidence 34667788899998773321 1 12223323222 333433 45688899999999999997751 11111000
Q ss_pred ccC-cChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 331 AVG-RGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 331 g~g-~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+.. ...+..+..+++..+ .+||+++||| +..++.+++.+||++|.+|+.|..
T Consensus 141 ~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 141 DAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhhc
Confidence 100 112455555544432 2999999999 799999999999999999998754
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=69.28 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=86.9
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHH--cCCCEEEEccCC
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIE--AGVDGLRVGMGS 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~--aGad~I~v~~g~ 320 (505)
.+..+.++.+.+.|++.+++ |. ..+. ....+.++++.+.. |+.+ |++.|.++++.+.. .|++.++++...
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~~~-~~n~~~i~~i~~~~---~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a 111 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIVGL-GDNFSLLSKLSKRV---ELIADCGVRSPEDLETLPFTLEFASRVVVATET 111 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccccCC-cchHHHHHHHHhhC---cEEEcCccCCHHHHHHHHhhhccceEEeecChh
Confidence 35678888888999999866 33 3333 34567788787763 5655 68889999988865 368888765311
Q ss_pred --------------------cce-----------------------eeccc-ccccC-cChHHHHHHHHHHHhhcCCcEE
Q 010640 321 --------------------GSI-----------------------CTTQE-VCAVG-RGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 321 --------------------g~~-----------------------~~~~~-~~g~g-~p~~~~l~~v~~~~~~~~ipvI 355 (505)
|.. ..+.. ..|-. .|.++.+..+ ++..++|+|
T Consensus 112 ~~~p~~l~~~~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~eli~~i---~~~~~~pvi 188 (221)
T TIGR00734 112 LDITELLRECYTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNLELLTKT---LELSEHPVM 188 (221)
T ss_pred hCCHHHHHHhhhEEEEEeECCccccccccccHHHHHHHHHhcCCEEEEEECCccccCCCCCHHHHHHH---HhhCCCCEE
Confidence 100 00000 00110 1334444443 334579999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++|||++..|+.++..+||++|.+|++|.
T Consensus 189 a~GGi~s~ed~~~l~~~Ga~~vivgsal~ 217 (221)
T TIGR00734 189 LGGGISGVEDLELLKEMGVSAVLVATAVH 217 (221)
T ss_pred EeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence 99999999999999999999999999883
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=73.64 Aligned_cols=131 Identities=22% Similarity=0.245 Sum_probs=89.6
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEc---ccC-----CHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGG---NVV-----TMYQ 302 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g---~V~-----t~e~ 302 (505)
++...+.++.+.+.|++.|-++..+. ++.-+.+.++.+++..+++||-+| ++. ..+-
T Consensus 78 p~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~i 157 (323)
T COG0042 78 PELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEI 157 (323)
T ss_pred HHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHH
Confidence 34456666777778999998876431 234567778888887644888775 222 3457
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~ 381 (505)
++.+.++|++++.| |+ -++...+.+-.....+.++++.++. +|||+-|+|.+.+|..+.|. -|+|+||+|+
T Consensus 158 a~~~~~~g~~~ltV--Hg----Rtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 158 ARILEDAGADALTV--HG----RTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHhcCCCEEEE--ec----ccHHhcCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcH
Confidence 88899999999977 21 1222222222334556565554432 99999999999999999998 5699999998
Q ss_pred ccc
Q 010640 382 FLA 384 (505)
Q Consensus 382 ~f~ 384 (505)
.-+
T Consensus 230 ga~ 232 (323)
T COG0042 230 GAL 232 (323)
T ss_pred HHc
Confidence 654
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=71.01 Aligned_cols=138 Identities=18% Similarity=0.239 Sum_probs=92.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccC-----
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMG----- 319 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g----- 319 (505)
..+..+.+....+.|++++.+-+...+..+..+.+..+++.+ ++|+..+.. .++.....+..+|||+|-+-..
T Consensus 67 ~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 67 DFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDD 145 (254)
T ss_dssp S-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHH
T ss_pred cCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHH
Confidence 345788899999999999999777666778889999999887 899999876 5888888899999999865320
Q ss_pred -------------------------------Ccc--e-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHH
Q 010640 320 -------------------------------SGS--I-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365 (505)
Q Consensus 320 -------------------------------~g~--~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~d 365 (505)
.|. + -..|.+..+.+. +.....+....++ ++.+|+.+||.++.|
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd-~~~~~~l~~~ip~-~~~~iseSGI~~~~d 223 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVD-LNRTEELAPLIPK-DVIVISESGIKTPED 223 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBH-THHHHHHHCHSHT-TSEEEEESS-SSHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccC-hHHHHHHHhhCcc-ceeEEeecCCCCHHH
Confidence 000 0 111223333222 1222233333332 478999999999999
Q ss_pred HHHHHHhCCCEEEecccccCC
Q 010640 366 IVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 366 i~kal~lGA~~V~~G~~f~~~ 386 (505)
+.+...+|+++|.+|+.|+.+
T Consensus 224 ~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 224 ARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp HHHHCTTT-SEEEESHHHHTS
T ss_pred HHHHHHCCCCEEEECHHHhCC
Confidence 999999999999999999754
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.3e-05 Score=77.94 Aligned_cols=131 Identities=21% Similarity=0.201 Sum_probs=86.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEccc-------
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGGNV------- 297 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g~V------- 297 (505)
+.+.++.+.++|.|.|.|+..+|+ + ....+.++.+|+.. +.||.++--
T Consensus 144 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~ 222 (337)
T PRK13523 144 FKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHPG 222 (337)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCCC
Confidence 556677888899999999875421 1 23567888888876 556655311
Q ss_pred -CCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh
Q 010640 298 -VTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL 372 (505)
Q Consensus 298 -~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l 372 (505)
.+.+ -++.+.++|+|+|.++.|.-.........++ ...... +..+..++||++.|+|.++.++.++|.-
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~---~~~~~~---~ik~~~~ipVi~~G~i~~~~~a~~~l~~ 296 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGY---QVPFAE---HIREHANIATGAVGLITSGAQAEEILQN 296 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccc---cHHHHH---HHHhhcCCcEEEeCCCCCHHHHHHHHHc
Confidence 1343 4467778999999997442100000001111 222222 2233457999999999999999999998
Q ss_pred C-CCEEEecccccCC
Q 010640 373 G-ASTVMMGSFLAGS 386 (505)
Q Consensus 373 G-A~~V~~G~~f~~~ 386 (505)
| ||+|++|++|+.-
T Consensus 297 g~~D~V~~gR~~iad 311 (337)
T PRK13523 297 NRADLIFIGRELLRN 311 (337)
T ss_pred CCCChHHhhHHHHhC
Confidence 8 9999999999764
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00035 Score=66.21 Aligned_cols=121 Identities=25% Similarity=0.288 Sum_probs=81.6
Q ss_pred HHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCC-HHHHHHHHHcCCCEEEEccCCcceeeccc
Q 010640 252 RLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVT-MYQAQNLIEAGVDGLRVGMGSGSICTTQE 328 (505)
Q Consensus 252 ~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t-~e~a~~l~~aGad~I~v~~g~g~~~~~~~ 328 (505)
.++.+.++|+|++.+|...+. ....+.++.+++. ++++++. +..+ .+.++.+.+.|+|++.+.. |...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-~~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p--g~~~---- 138 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-ATIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVHT--GLDE---- 138 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-HHHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC--CcCc----
Confidence 578889999999998875432 2235666666665 7888763 3333 4788888899999986632 1110
Q ss_pred ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..++...+..+..+.+... ..++.++||| +...+..++.+||+.+.+|+.+..
T Consensus 139 -~~~~~~~~~~i~~l~~~~~--~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 139 -QAKGQNPFEDLQTILKLVK--EARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred -ccCCCCCHHHHHHHHHhcC--CCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence 1112223344444444333 2566679999 889999999999999999998754
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00024 Score=67.78 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=86.3
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. ++|++. ++.|+.++..+.++|++.++
T Consensus 70 ~~~vGaGTVl---~~e~a~~a~~aGA~FiV---sP~~~---~~v~~~~~~~--~i~~iP-G~~TpsEi~~A~~~Ga~~vK 137 (222)
T PRK07114 70 GMILGVGSIV---DAATAALYIQLGANFIV---TPLFN---PDIAKVCNRR--KVPYSP-GCGSLSEIGYAEELGCEIVK 137 (222)
T ss_pred CeEEeeEeCc---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEE
Confidence 4667766432 45778889999999996 33333 3455555555 788776 68999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HHHHHHHHHhCCCEEEecccccC
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+=- .. . .|.+.+.+| ..-. -++++++.|||.- ..++...|.+||.+|.+|+.+..
T Consensus 138 lFP-------A~-~--~G~~~ikal---~~p~--p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 138 LFP-------GS-V--YGPGFVKAI---KGPM--PWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred ECc-------cc-c--cCHHHHHHH---hccC--CCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcC
Confidence 720 00 0 122222222 2212 2589999999985 58999999999999999998753
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=97.99 E-value=8e-05 Score=76.29 Aligned_cols=135 Identities=20% Similarity=0.190 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc--c--c-
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG--N--V- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g--~--V- 297 (505)
++.+.+..+.++|.|.|.++.++|. + ....+.++.+|+..+ +.+|.+. . .
T Consensus 142 ~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~ 221 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT 221 (343)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc
Confidence 3556677778899999999885542 1 235678888888872 4444442 1 0
Q ss_pred ---CCH----HHHHHHHHcC-CCEEEEccCCccee----e-c-ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH
Q 010640 298 ---VTM----YQAQNLIEAG-VDGLRVGMGSGSIC----T-T-QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363 (505)
Q Consensus 298 ---~t~----e~a~~l~~aG-ad~I~v~~g~g~~~----~-~-~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~ 363 (505)
.+. +.++.+.++| +|++.++.|.-... . . ....+.+ ....... +..+..++|||+.|||.++
T Consensus 222 ~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~ik~~~~ipvi~~G~i~~~ 297 (343)
T cd04734 222 EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPG-PFLPLAA---RIKQAVDLPVFHAGRIRDP 297 (343)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcc-hhHHHHH---HHHHHcCCCEEeeCCCCCH
Confidence 123 3457777898 89999964321100 0 0 0000000 1122222 2333457999999999999
Q ss_pred HHHHHHHHhC-CCEEEecccccCC
Q 010640 364 GHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 364 ~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
.++.+++.-| ||+|++|+.|+.-
T Consensus 298 ~~~~~~l~~~~~D~V~~gR~~lad 321 (343)
T cd04734 298 AEAEQALAAGHADMVGMTRAHIAD 321 (343)
T ss_pred HHHHHHHHcCCCCeeeecHHhHhC
Confidence 9999999977 9999999999753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.5e-05 Score=69.95 Aligned_cols=119 Identities=22% Similarity=0.283 Sum_probs=82.2
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.+++..-. ..+.++.+++.|++.++. ... ..+.++..++. +.++++ ++.|.+++..+.++|+|++.+
T Consensus 56 ~~iGag~v~---~~~~~~~a~~~Ga~~i~~--p~~----~~~~~~~~~~~--~~~~i~-gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 56 ALIGAGTVL---TPEQADAAIAAGAQFIVS--PGL----DPEVVKAANRA--GIPLLP-GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred CEEEEEeCC---CHHHHHHHHHcCCCEEEc--CCC----CHHHHHHHHHc--CCcEEC-CcCCHHHHHHHHHCCCCEEEE
Confidence 556654321 357888899999999964 222 12444444443 677777 677999999999999999965
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
-. . ...| ...+..+.. .. ++|+++.||| +..++...+.+||++|.+|+.+.
T Consensus 124 ~p-------~---~~~g---~~~~~~l~~---~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 124 FP-------A---EAVG---PAYIKALKG---PFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred cC-------C---cccC---HHHHHHHHh---hCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 21 0 0011 223333322 22 4899999999 99999999999999999999874
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.4e-05 Score=78.54 Aligned_cols=134 Identities=21% Similarity=0.242 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-----CceEEEc-cc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-----ELDVIGG-NV 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-----~~~Vi~g-~V 297 (505)
++.+.++.+.++|.|.|.||.++|+ + ....+.++.+|+..+ +.+|.+. +.
T Consensus 145 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 3556677788899999999864421 1 235678888888763 4455442 11
Q ss_pred -------CCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHH
Q 010640 298 -------VTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHI 366 (505)
Q Consensus 298 -------~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di 366 (505)
.+. +-++.+.++|+|+|.|+.+.- +..... ...........+++... .++|||+.|||.++.++
T Consensus 225 ~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~---~~~~~~-~~~~~~~~~~~ik~~~~-~~iPVi~~Ggi~t~e~a 299 (353)
T cd04735 225 EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF---DRKSRR-GRDDNQTIMELVKERIA-GRLPLIAVGSINTPDDA 299 (353)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc---cccccc-CCcchHHHHHHHHHHhC-CCCCEEEECCCCCHHHH
Confidence 123 345777889999999974321 111000 00011222233333322 36899999999999999
Q ss_pred HHHHHhCCCEEEecccccCC
Q 010640 367 VKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 367 ~kal~lGA~~V~~G~~f~~~ 386 (505)
.++++.|||+|++|++|+.-
T Consensus 300 e~~l~~gaD~V~~gR~liad 319 (353)
T cd04735 300 LEALETGADLVAIGRGLLVD 319 (353)
T ss_pred HHHHHcCCChHHHhHHHHhC
Confidence 99999999999999999753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=70.07 Aligned_cols=100 Identities=19% Similarity=0.204 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..++..+.+.+. +..|+.=.-.++-.|++|.++||.++.--.. ..-.|-|+.+...+..+.+ ..++||
T Consensus 125 etl~Aae~Lv~e--GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgs-------PIGSg~Gl~n~~~l~~i~e---~~~vpV 192 (267)
T CHL00162 125 GTLKAAEFLVKK--GFTVLPYINADPMLAKHLEDIGCATVMPLGS-------PIGSGQGLQNLLNLQIIIE---NAKIPV 192 (267)
T ss_pred HHHHHHHHHHHC--CCEEeecCCCCHHHHHHHHHcCCeEEeeccC-------cccCCCCCCCHHHHHHHHH---cCCCcE
Confidence 334444444333 3444443445788999999999999975311 1112334555555544443 356999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
|.++||.++.|+.+|+.+|||+|.+.|.++.+
T Consensus 193 ivdAGIgt~sDa~~AmElGaDgVL~nSaIakA 224 (267)
T CHL00162 193 IIDAGIGTPSEASQAMELGASGVLLNTAVAQA 224 (267)
T ss_pred EEeCCcCCHHHHHHHHHcCCCEEeecceeecC
Confidence 99999999999999999999999999998743
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00022 Score=68.58 Aligned_cols=129 Identities=22% Similarity=0.185 Sum_probs=82.4
Q ss_pred HHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQE 328 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~ 328 (505)
..++.+.+.|++.+.+.-+... .....+.++..++. ++.+++ .+.+.+.++.+.+.|.++|.+... +.+.++..
T Consensus 76 ~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~-~~igt~~~ 151 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVV-CVNNPETSAAAAALGPDYVAVEPP-ELIGTGIP 151 (223)
T ss_pred hHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEE-EcCCHHHHHHHhcCCCCEEEEeCc-cccccCCC
Confidence 4477888899999988543211 12233444444443 565554 667788888888899998865310 00111111
Q ss_pred ccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.. ..+...+.+..+..++ .++||++.|||.++.++..++..|||+|.+|+.++.+
T Consensus 152 ~~---~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 152 VS---KAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CC---cCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 00 0122333343343443 2589999999999999999999999999999999753
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=64.43 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=111.3
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..+.++.+.+.+..++-|||= + |--...++++.+.. ....+.+|..+. . +.++.+++.|
T Consensus 42 ~~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~n~~~i~~i~~---------~~~~vqvGGGIR----~-e~i~~~l~~G 104 (262)
T PLN02446 42 DKSAAEFAEMYKRDGLTGGHVIMLGA---DDASLAAALEALRA---------YPGGLQVGGGVN----S-ENAMSYLDAG 104 (262)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCC---CCcccHHHHHHHHh---------CCCCEEEeCCcc----H-HHHHHHHHcC
Confidence 356778888999999999999985 4 44444555555432 123455666652 3 8899999999
Q ss_pred ccEEEEeCCC-CCchhHHHHHHHHHHhC-CCceEEE-------c--cc----------CCHHH-HHHHHHcCCCEEEEcc
Q 010640 261 VNVVVLDSSQ-GNSSFQIEMIKYAKKTY-PELDVIG-------G--NV----------VTMYQ-AQNLIEAGVDGLRVGM 318 (505)
Q Consensus 261 ad~I~i~~~~-g~~~~~~~~i~~l~~~~-~~~~Vi~-------g--~V----------~t~e~-a~~l~~aGad~I~v~~ 318 (505)
++-+++.+.. .++.-..++++.+.+.| ++..++. | .| .+..+ +.++.+.|+..+.+-
T Consensus 105 a~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~T- 183 (262)
T PLN02446 105 ASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVH- 183 (262)
T ss_pred CCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEE-
Confidence 9999995421 11001135566666666 3222211 1 11 13444 688888898887552
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC--CCEEEecccc
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG--ASTVMMGSFL 383 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG--A~~V~~G~~f 383 (505)
...++-+. ..|.++.+..+++ ..++|||++|||.+-.|+.+...+| ..+|.+|+++
T Consensus 184 -----dI~rDGtl-~G~d~el~~~l~~---~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 184 -----GVDVEGKR-LGIDEELVALLGE---HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred -----EEcCCCcc-cCCCHHHHHHHHh---hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 11111111 1255555555444 4679999999999999999999985 6889999886
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=74.35 Aligned_cols=135 Identities=26% Similarity=0.291 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc----cc-
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG----NV- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g----~V- 297 (505)
++.+.++.+.++|.|.|+||.++|+ + .-..+.++.+|+.++ +.||.+. +.
T Consensus 150 ~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~ 229 (363)
T COG1902 150 DFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFF 229 (363)
T ss_pred HHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccC
Confidence 3666677888999999999986532 1 245788888888874 3455541 11
Q ss_pred ----CC----HHHHHHHHHcC-CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 298 ----VT----MYQAQNLIEAG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 298 ----~t----~e~a~~l~~aG-ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
.+ .+-++.|.+.| +|++.++.+...........+ ...... .........++|+|+.|+|.++..+.+
T Consensus 230 ~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~-~~~~~~---~a~~i~~~~~~pvi~~G~i~~~~~Ae~ 305 (363)
T COG1902 230 DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSG-PGYQVE---FAARIKKAVRIPVIAVGGINDPEQAEE 305 (363)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccc-cchhHH---HHHHHHHhcCCCEEEeCCCCCHHHHHH
Confidence 12 44578888899 799998743221111111110 001111 112223345699999999999999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
+++-| ||+|.+|++|+.-
T Consensus 306 ~l~~g~aDlVa~gR~~lad 324 (363)
T COG1902 306 ILASGRADLVAMGRPFLAD 324 (363)
T ss_pred HHHcCCCCEEEechhhhcC
Confidence 99998 9999999999863
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0003 Score=66.87 Aligned_cols=123 Identities=17% Similarity=0.194 Sum_probs=92.5
Q ss_pred CccHHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 246 RESDKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 246 ~~~~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
.+...+.++.+.+. +--++.|-.+. .-++.++.+++. ++++-++.|.|.+.+..+.++|+++|.. .
T Consensus 63 ~e~~i~~a~~l~~~~~~~~iKIP~T~----~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP-------~ 129 (211)
T cd00956 63 AEGMVAEARKLASLGGNVVVKIPVTE----DGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSP-------F 129 (211)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCcH----hHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEE-------e
Confidence 34566677777776 43333342222 346777777777 7999999999999999999999998632 2
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCc---EEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVP---VIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ip---vIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+| ...+|.+....+.++.+.++.++.+ +++ |++++.++..|+.+||+.|-+...++
T Consensus 130 vgR-~~~~g~dg~~~i~~i~~~~~~~~~~tkil~A--s~r~~~ei~~a~~~Gad~vTv~~~vl 189 (211)
T cd00956 130 VGR-IDDLGGDGMELIREIRTIFDNYGFDTKILAA--SIRNPQHVIEAALAGADAITLPPDVL 189 (211)
T ss_pred cCh-HhhcCCCHHHHHHHHHHHHHHcCCCceEEec--ccCCHHHHHHHHHcCCCEEEeCHHHH
Confidence 223 4456778888888888888888766 555 99999999999999999999997654
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00015 Score=74.03 Aligned_cols=128 Identities=18% Similarity=0.162 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCCCceEEEcc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYPELDVIGGN------- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~~~~Vi~g~------- 296 (505)
.+.+.++.+.++|.|.|.|+..+|+ .....+.++.+|+..+.-+|.++-
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~ 232 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Confidence 3556677888899999999875521 134568888888876322555421
Q ss_pred -c---CCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 -V---VTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 -V---~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
. .+. +.++.|.++|+|++.|+.|.- . ....++ .......+++ ..++|||+.|||. +.++.+
T Consensus 233 ~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~--~--~~~~~~---~~~~~~~ik~---~~~ipvi~~G~i~-~~~a~~ 301 (338)
T cd02933 233 DMGDSDPEATFSYLAKELNKRGLAYLHLVEPRV--A--GNPEDQ---PPDFLDFLRK---AFKGPLIAAGGYD-AESAEA 301 (338)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCC--C--Cccccc---chHHHHHHHH---HcCCCEEEECCCC-HHHHHH
Confidence 0 133 445778889999999964321 1 111222 2222333333 3579999999997 999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
+++.| ||+|++|++|+.-
T Consensus 302 ~l~~g~~D~V~~gR~~lad 320 (338)
T cd02933 302 ALADGKADLVAFGRPFIAN 320 (338)
T ss_pred HHHcCCCCEEEeCHhhhhC
Confidence 99987 9999999999753
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00044 Score=66.82 Aligned_cols=136 Identities=11% Similarity=0.164 Sum_probs=93.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc---CC---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM---GS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~---g~--- 320 (505)
+..+.+..+.+.|+.++.+.+...+..+.++.++.+++.. ++||+.+.. .++.....+..+|||+|.+-. ..
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l 140 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQI 140 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHH
Confidence 4668888899999999998776555556678888888876 789999754 688888888889999996532 00
Q ss_pred ----------cc---eeecc---------------cccccCcChH----HHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 321 ----------GS---ICTTQ---------------EVCAVGRGQA----TAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 321 ----------g~---~~~~~---------------~~~g~g~p~~----~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
|- +.... ...++..-++ .....+....+ .+..+|+.+||.++.|+.+
T Consensus 141 ~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~d~~~ 219 (247)
T PRK13957 141 KSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRSDLDK 219 (247)
T ss_pred HHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHH
Confidence 00 00000 0122222222 23333344443 2577899999999999999
Q ss_pred HHHhCCCEEEecccccCC
Q 010640 369 ALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lGA~~V~~G~~f~~~ 386 (505)
...+ ||+|.+|+.|+.+
T Consensus 220 l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 220 FRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHh-CCEEEECHHHhCC
Confidence 8876 9999999998754
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=67.59 Aligned_cols=128 Identities=24% Similarity=0.363 Sum_probs=87.5
Q ss_pred HHHHHHHHcCccEEEEeC-----CCCC---chhHHHHHHHHHHhCCCceEEEcccC-------CHHHHHHHHHcCCCEEE
Q 010640 251 ERLEHLVKAGVNVVVLDS-----SQGN---SSFQIEMIKYAKKTYPELDVIGGNVV-------TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~-----~~g~---~~~~~~~i~~l~~~~~~~~Vi~g~V~-------t~e~a~~l~~aGad~I~ 315 (505)
+.....+++|+|.+++.. ..|. .+.+++..++.|+.+|++++-+ +|. ..+-|.+|.++|+|.|.
T Consensus 72 ~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsV-TVPHiL~ld~Qv~LA~~L~~~GaDiIQ 150 (242)
T PF04481_consen 72 ELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSV-TVPHILPLDQQVQLAEDLVKAGADIIQ 150 (242)
T ss_pred HHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEE-ecCccccHHHHHHHHHHHHHhCCcEEE
Confidence 555667899999999943 2342 2678888999999999888765 342 24568889999999886
Q ss_pred EccCCcceeeccc---ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 316 VGMGSGSICTTQE---VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 316 v~~g~g~~~~~~~---~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
--.|..+...... ...-..|++.+..++.+ ..++||+.+.|+.+- -+=-|+++||++|++|+..
T Consensus 151 TEGgtss~p~~~g~lglIekaapTLAaay~ISr---~v~iPVlcASGlS~v-T~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 151 TEGGTSSKPTSPGILGLIEKAAPTLAAAYAISR---AVSIPVLCASGLSAV-TAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred cCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHh---ccCCceEeccCcchh-hHHHHHHcCCcccchhHHh
Confidence 5322111111111 11112366666665554 467999999998654 4557899999999999976
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00047 Score=64.43 Aligned_cols=124 Identities=20% Similarity=0.171 Sum_probs=85.0
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC-----chhHHHHHHHHHHhC-CCceEEEcccC----CHHHHH----HHHHcCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN-----SSFQIEMIKYAKKTY-PELDVIGGNVV----TMYQAQ----NLIEAGV 311 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~-----~~~~~~~i~~l~~~~-~~~~Vi~g~V~----t~e~a~----~l~~aGa 311 (505)
.++..+.++.+.+.|+|.+.+....+. .....+.++.+.+.. .++|+++.+.. +.+... .+.+.|+
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~ 143 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA 143 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 356778888999999999988654321 355677777787764 37898886652 444433 3567899
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++|+.+.+... +...+..+..+.+... .++|++..||+.+...+..++.+||+++.+|
T Consensus 144 ~~iK~~~~~~~----------~~~~~~~~~~i~~~~~-~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 144 DFIKTSTGFGG----------GGATVEDVKLMKEAVG-GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CEEEeCCCCCC----------CCCCHHHHHHHHHhcc-cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 99988642110 1123334444443322 1579999999999999999999999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0003 Score=66.94 Aligned_cols=121 Identities=19% Similarity=0.260 Sum_probs=86.1
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. ++|++. ++.|++++..+.++|+|++.
T Consensus 67 ~~~vGaGTV~---~~~~~~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~T~~E~~~A~~~Gad~vk 134 (213)
T PRK06552 67 EVLIGAGTVL---DAVTARLAILAGAQFIV---SPSFN---RETAKICNLY--QIPYLP-GCMTVTEIVTALEAGSEIVK 134 (213)
T ss_pred CeEEeeeeCC---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCCEEC-CcCCHHHHHHHHHcCCCEEE
Confidence 4677776432 45778889999999997 33332 3455555555 788877 68899999999999999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+= + ..-.| +..+..++... .++|+++.|||. ..++...+++||+++.+|+.+.
T Consensus 135 lF--P--------a~~~G---~~~ik~l~~~~--p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 135 LF--P--------GSTLG---PSFIKAIKGPL--PQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred EC--C--------cccCC---HHHHHHHhhhC--CCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHh
Confidence 61 0 01122 22233333322 249999999986 7999999999999999999885
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0006 Score=66.32 Aligned_cols=173 Identities=13% Similarity=-0.024 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV 263 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~ 263 (505)
+..++++.+.+.+.+.+-|+|-+...|--.-.++++..... ....+.++..+. ..+.++.+++.|++-
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~g~~~n~~~i~~i~~~--------~~~~v~vgGGIr----s~e~~~~~l~~Ga~~ 99 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAFGGGNNEMMLEEVVKL--------LVVVEELSGGRR----DDSSLRAALTGGRAR 99 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCCCCcchHHHHHHHHHH--------CCCCEEEcCCCC----CHHHHHHHHHcCCCE
Confidence 45577788888889889998863222555556666654321 112345555654 557888899999999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCceEEE----c----------------ccCCHHHHHHHHHcCCCEEEEc-cCCcc
Q 010640 264 VVLDSSQGNSSFQIEMIKYAKKTYPELDVIG----G----------------NVVTMYQAQNLIEAGVDGLRVG-MGSGS 322 (505)
Q Consensus 264 I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~----g----------------~V~t~e~a~~l~~aGad~I~v~-~g~g~ 322 (505)
+++.+..-. ..+.++.+.+.+++- +++ + ...-.+.++++.+.|+..+.+- +.
T Consensus 100 vvigT~a~~---~p~~~~~~~~~~g~~-ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~--- 172 (243)
T TIGR01919 100 VNGGTAALE---NPWWAAAVIRYGGDI-VAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSK--- 172 (243)
T ss_pred EEECchhhC---CHHHHHHHHHHcccc-EEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecC---
Confidence 988553221 123444444554321 111 1 0112355677888898877552 21
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH---HhCCCEEEecccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL---VLGASTVMMGSFL 383 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal---~lGA~~V~~G~~f 383 (505)
++-+.- .|.+..+..+++ ..++|||++||+++..|+.++- .+|+++|.+|++|
T Consensus 173 ----~dGt~~-G~d~~l~~~l~~---~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al 228 (243)
T TIGR01919 173 ----KDGLSG-GPNELLLEVVAA---RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLL 228 (243)
T ss_pred ----CcccCC-CcCHHHHHHHHh---hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHH
Confidence 111111 255555544443 3579999999999999999874 4599999999987
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=66.44 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=74.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEcc-CCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM-GSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~-g~g~~~~~~~~~g 331 (505)
.+.+.+.|++.+++.. ... ....++.++.. +..+.+ .+.+.+++..+.+.|+|++.++. -++.. ..+
T Consensus 65 ~~~a~~~g~~~vh~~~--~~~--~~~~~~~~~~~--~~~~g~-~~~t~~~~~~~~~~g~d~i~~~~~~~~~~-----~~~ 132 (196)
T cd00564 65 VDLALAVGADGVHLGQ--DDL--PVAEARALLGP--DLIIGV-STHSLEEALRAEELGADYVGFGPVFPTPT-----KPG 132 (196)
T ss_pred HHHHHHcCCCEEecCc--ccC--CHHHHHHHcCC--CCEEEe-eCCCHHHHHHHhhcCCCEEEECCccCCCC-----CCC
Confidence 5567788999776532 211 12222222221 344433 45688999999999999998852 11110 011
Q ss_pred c-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 332 V-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 332 ~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
. ....+..+.++++ ..++||+++||| +..++.+++.+||+++.+|+.|..+
T Consensus 133 ~~~~~~~~~~~~~~~---~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~ 184 (196)
T cd00564 133 AGPPLGLELLREIAE---LVEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred CCCCCCHHHHHHHHH---hCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhcC
Confidence 1 1122344444433 256999999999 5799999999999999999988643
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00031 Score=66.16 Aligned_cols=122 Identities=24% Similarity=0.279 Sum_probs=85.4
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. ++|.+. ++.|+.++..+.++|++.++
T Consensus 59 ~~~vGAGTVl---~~~~a~~a~~aGA~Fiv---sP~~~---~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vK 126 (204)
T TIGR01182 59 DALIGAGTVL---NPEQLRQAVDAGAQFIV---SPGLT---PELAKHAQDH--GIPIIP-GVATPSEIMLALELGITALK 126 (204)
T ss_pred CCEEEEEeCC---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHHc--CCcEEC-CCCCHHHHHHHHHCCCCEEE
Confidence 4677776432 45778889999999995 33322 3555556665 788877 78999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- ..... |...+.++ +.-. -++|+++.|||.- .++...|++||.+|++|+.+.
T Consensus 127 lFP-------A~~~G--G~~yikal---~~pl--p~i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 127 LFP-------AEVSG--GVKMLKAL---AGPF--PQVRFCPTGGINL-ANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred ECC-------chhcC--CHHHHHHH---hccC--CCCcEEecCCCCH-HHHHHHHhCCCEEEEEChhhc
Confidence 720 00000 11222222 2222 2599999999865 899999999999999999875
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00013 Score=75.13 Aligned_cols=137 Identities=20% Similarity=0.239 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCC-CceEEEc--cc---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYP-ELDVIGG--NV--- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g--~V--- 297 (505)
.+.+.++.+.++|.|.|.|+.++|+ .....+.++.+|+.++ +.+|.+. ..
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~ 217 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV 217 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC
Confidence 3556677788899999999874421 1345678888888873 4555431 11
Q ss_pred ---CCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 298 ---VTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 298 ---~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.+. +-++.|.++|+|+|.|+.+--. ...... ....|...-+....+..+..++||++.|++.++.++.+++
T Consensus 218 ~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e-~~~~~~-~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i 295 (353)
T cd02930 218 EGGSTWEEVVALAKALEAAGADILNTGIGWHE-ARVPTI-ATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLL 295 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCC-CCCccc-cccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHH
Confidence 243 3456778899999999642100 000000 0001211112223344445689999999999999999999
Q ss_pred HhC-CCEEEecccccCC
Q 010640 371 VLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~~ 386 (505)
..| +|+|++|+.|+.-
T Consensus 296 ~~g~~D~V~~gR~~l~d 312 (353)
T cd02930 296 ADGDADMVSMARPFLAD 312 (353)
T ss_pred HCCCCChhHhhHHHHHC
Confidence 987 9999999998753
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0012 Score=71.16 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEee---chhhhhhcCCCCCCCccCCCCcceEEEeecCCcc-------HHHH
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTR---EDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRES-------DKER 252 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~---~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~-------~~e~ 252 (505)
+..+.++.+.+.+.+.|-++|= +..-|-..+ -++++..... -.-.+.+|..+.+.++ ..+.
T Consensus 268 dPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~--------~~ip~~vGGGIr~~~d~~~~~~~~~e~ 339 (538)
T PLN02617 268 KPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASEN--------VFVPLTVGGGIRDFTDANGRYYSSLEV 339 (538)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhh--------CCCCEEEcCCccccccccccccchHHH
Confidence 3456788888999999999984 322222222 3444443221 1224556666654432 3688
Q ss_pred HHHHHHcCccEEEEeCCC-CC--------chhHHHHHHHHHHhCCCceEEE----c------------------------
Q 010640 253 LEHLVKAGVNVVVLDSSQ-GN--------SSFQIEMIKYAKKTYPELDVIG----G------------------------ 295 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~-g~--------~~~~~~~i~~l~~~~~~~~Vi~----g------------------------ 295 (505)
++.++++|+|-+.+.+.. -+ .....++++.+.+.|..-.|++ +
T Consensus 340 ~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~ 419 (538)
T PLN02617 340 ASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNG 419 (538)
T ss_pred HHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCc
Confidence 999999999999996521 00 0112356677777773322222 1
Q ss_pred -----------------ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC
Q 010640 296 -----------------NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG 358 (505)
Q Consensus 296 -----------------~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G 358 (505)
++.-.+-++.+.+.|+.-|.+- +..++-+..| +.++.+..+. ...++|||++|
T Consensus 420 ~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t------~id~DGt~~G-~d~~l~~~v~---~~~~ipviasG 489 (538)
T PLN02617 420 EEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLN------CIDCDGQGKG-FDIELVKLVS---DAVTIPVIASS 489 (538)
T ss_pred ccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEe------eccccccccC-cCHHHHHHHH---hhCCCCEEEEC
Confidence 1112355677777888766542 1111111112 3444444443 34679999999
Q ss_pred CCCCHHHHHHHHH-hCCCEEEeccccc
Q 010640 359 GISNSGHIVKALV-LGASTVMMGSFLA 384 (505)
Q Consensus 359 GI~~~~di~kal~-lGA~~V~~G~~f~ 384 (505)
|+.+..|+.+++. .||+++..|+.|.
T Consensus 490 G~g~~~d~~~~~~~~~~~a~~aa~~fh 516 (538)
T PLN02617 490 GAGTPEHFSDVFSKTNASAALAAGIFH 516 (538)
T ss_pred CCCCHHHHHHHHhcCCccEEEEEeeec
Confidence 9999999999997 6799999999984
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00051 Score=66.96 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-CCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-GNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
..+.++.+.++|++.+.++... .......+.++.+++. ++.. .+..-.+.+..+.+.+..-.++.++..+|...
T Consensus 90 ~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~--Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~- 166 (244)
T PRK13125 90 LDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNK--GLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGV- 166 (244)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHc--CCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCC-
Confidence 5567888999999999986421 1123445666777776 4433 33444567788888888777776663332211
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. +.......+.++++... +.||+.+|||.++.++.+++.+|||++.+||.|.
T Consensus 167 ~-----~~~~~~~~i~~lr~~~~--~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 167 P-----LPVSVERNIKRVRNLVG--NKYLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred C-----chHHHHHHHHHHHHhcC--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 0 11122234444444332 3789999999999999999999999999999875
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00022 Score=70.18 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cC
Q 010640 275 FQIEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SG 351 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ 351 (505)
...+.++.+|+.+|. .+|.+ ++.+.+++..+.++|+|.|.+.+ +.++.+.++.+..+. .+
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~V-Ev~tleea~~A~~~GaDiI~LDn----------------~~~e~l~~~v~~~~~~~~~ 229 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEI-ECESLEEAKNAMNAGADIVMCDN----------------MSVEEIKEVVAYRNANYPH 229 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhhccCCC
Confidence 456788888888874 66666 99999999999999999986532 345555555554332 24
Q ss_pred CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 352 VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 352 ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+.++||| |+..+.+...+|+|.+.+|+++.
T Consensus 230 ~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 230 VLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred eEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 679999999 99999999999999999999764
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.8e-05 Score=65.40 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=50.5
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ |+++|+||.+||.+
T Consensus 57 ~~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 57 HPRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hhhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 3568899988 8999999999999999999999999999998 99999999999864
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=66.70 Aligned_cols=122 Identities=26% Similarity=0.368 Sum_probs=81.4
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+|+..-. ..+.++.++++|++++.- .+. ..+.++..++. ++|++. ++.|+.++..+.++|++.++
T Consensus 59 ~~~vGAGTV~---~~e~a~~a~~aGA~FivS---P~~---~~~v~~~~~~~--~i~~iP-G~~TptEi~~A~~~G~~~vK 126 (196)
T PF01081_consen 59 DLLVGAGTVL---TAEQAEAAIAAGAQFIVS---PGF---DPEVIEYAREY--GIPYIP-GVMTPTEIMQALEAGADIVK 126 (196)
T ss_dssp TSEEEEES-----SHHHHHHHHHHT-SEEEE---SS-----HHHHHHHHHH--TSEEEE-EESSHHHHHHHHHTT-SEEE
T ss_pred CCeeEEEecc---CHHHHHHHHHcCCCEEEC---CCC---CHHHHHHHHHc--CCcccC-CcCCHHHHHHHHHCCCCEEE
Confidence 4677776432 457888999999999974 222 34566666776 788877 68999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- ..-.| -+..+..++.-. -++++++.|||.- .++...+.+|+.+|++|+.+.
T Consensus 127 ~FP----------A~~~G--G~~~ik~l~~p~--p~~~~~ptGGV~~-~N~~~~l~ag~~~vg~Gs~L~ 180 (196)
T PF01081_consen 127 LFP----------AGALG--GPSYIKALRGPF--PDLPFMPTGGVNP-DNLAEYLKAGAVAVGGGSWLF 180 (196)
T ss_dssp ETT----------TTTTT--HHHHHHHHHTTT--TT-EEEEBSS--T-TTHHHHHTSTTBSEEEESGGG
T ss_pred Eec----------chhcC--cHHHHHHHhccC--CCCeEEEcCCCCH-HHHHHHHhCCCEEEEECchhc
Confidence 720 01111 122222222222 2589999999875 789999999999999999875
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=97.75 E-value=2.9e-05 Score=68.44 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=52.9
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
.+..+|+. +++++.+++++.+++++|+++++.++||+++|+++|-||-.+|.+....
T Consensus 66 ta~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~~k~VGsItE~~iv~~~le 122 (187)
T COG3620 66 TAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEEDKVVGSITENDIVRALLE 122 (187)
T ss_pred eHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeCCeeeeeecHHHHHHHHhc
Confidence 35677998 9999999999999999999999999999999999999999999998754
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00082 Score=65.91 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCC-cceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGS-GSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~-g~~~~~ 326 (505)
..+.++.+.++|++.+.++.-. .+...+.++.+++.-...-.++....+.+..+.+.+..-.+|.+ +..| ++.
T Consensus 104 ~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~--- 178 (256)
T TIGR00262 104 VEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGA--- 178 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCC---
Confidence 3567888999999998885321 13445666666665212222344556677777776665445544 3211 111
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ ..+..+....+..+++ ..+.||+.+|||.+++++.+++.+|||+|.+||.|.
T Consensus 179 ~--~~~~~~~~~~i~~lr~---~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 179 R--NRAASALNELVKRLKA---YSAKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred c--ccCChhHHHHHHHHHh---hcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 0 0111122333433333 346899999999999999999999999999999985
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=97.74 E-value=2e-05 Score=58.15 Aligned_cols=46 Identities=15% Similarity=0.330 Sum_probs=41.6
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE 157 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~ 157 (505)
+|.+++ +.+++++++.++.+.|.+ ++ +||+|+ +++++|+||.+|+.
T Consensus 4 ~m~~~~--~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~~~~G~is~~dl~ 52 (57)
T PF00571_consen 4 IMTPPP--ITVSPDDSLEEALEIMRKNGISRLPVVDE---DGKLVGIISRSDLL 52 (57)
T ss_dssp HSBSSS--EEEETTSBHHHHHHHHHHHTSSEEEEEST---TSBEEEEEEHHHHH
T ss_pred CCcCCC--EEEcCcCcHHHHHHHHHHcCCcEEEEEec---CCEEEEEEEHHHHH
Confidence 466677 999999999999999999 77 999998 89999999999985
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00073 Score=67.98 Aligned_cols=137 Identities=14% Similarity=0.184 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh-CCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT-YPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM------- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~-~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~------- 318 (505)
+..+.++...+.|+.++.+-+...+..+..+.++.+|+. . ++||..|.. .++-....+..+|||+|-+-.
T Consensus 140 dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v-~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~ 218 (338)
T PLN02460 140 DPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGV-KCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLD 218 (338)
T ss_pred CHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCC-CCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHH
Confidence 467888888899999998877655555667888888886 5 789999874 577777777788888874321
Q ss_pred -----------------------------CC-cc--e-eecccccccCcChHHHHHHHHH-----HHhhcCCcEEecCCC
Q 010640 319 -----------------------------GS-GS--I-CTTQEVCAVGRGQATAVYKVSS-----IAAQSGVPVIADGGI 360 (505)
Q Consensus 319 -----------------------------g~-g~--~-~~~~~~~g~g~p~~~~l~~v~~-----~~~~~~ipvIa~GGI 360 (505)
.. |. + -..|++..+-+. +.....+.. ..+..++-+|+.+||
T Consensus 219 L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vD-l~~t~~L~~~~~~~~i~~~~~~~VsESGI 297 (338)
T PLN02460 219 IKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVD-ISNTKKLLEGERGEQIREKGIIVVGESGL 297 (338)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceEC-HHHHHHHhhhccccccCCCCeEEEECCCC
Confidence 10 11 0 111222222222 222222222 111124568999999
Q ss_pred CCHHHHHHHHHhCCCEEEecccccCC
Q 010640 361 SNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 361 ~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.++.|+.....+||++|.+|..|+.+
T Consensus 298 ~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 298 FTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999998754
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00017 Score=72.88 Aligned_cols=130 Identities=25% Similarity=0.262 Sum_probs=77.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEcc---cC-----CHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGN---VV-----TMYQ 302 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~---V~-----t~e~ 302 (505)
++...+.++.+.+.|++.|-++..++ ++....+.++.+++.. ++||-+|- .. +.+-
T Consensus 65 ~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~ 143 (309)
T PF01207_consen 65 PEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEF 143 (309)
T ss_dssp HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHH
T ss_pred HHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHH
Confidence 33344455555555899998876431 2345677888888876 57876651 11 4667
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~ 381 (505)
++.+.++|+++|.|= +- ++...--+.+..+.+..+ ++..++|||+-|||.+..|+.+.+.. |+|+||+|+
T Consensus 144 ~~~l~~~G~~~i~vH--~R----t~~q~~~~~a~w~~i~~i---~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 144 ARILEDAGVSAITVH--GR----TRKQRYKGPADWEAIAEI---KEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHTT--EEEEE--CS-----TTCCCTS---HHHHHHC---HHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESH
T ss_pred HHHhhhcccceEEEe--cC----chhhcCCcccchHHHHHH---hhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEch
Confidence 888999999999772 11 111111122334445444 34456999999999999999999976 999999998
Q ss_pred cccC
Q 010640 382 FLAG 385 (505)
Q Consensus 382 ~f~~ 385 (505)
..+.
T Consensus 215 gal~ 218 (309)
T PF01207_consen 215 GALG 218 (309)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 7653
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00091 Score=66.62 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHc-CccEEEEeCC--CCC-chhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcc
Q 010640 248 SDKERLEHLVKA-GVNVVVLDSS--QGN-SSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGS 322 (505)
Q Consensus 248 ~~~e~~~~liea-Gad~I~i~~~--~g~-~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~ 322 (505)
+....++...+. +-+++-+..- +.. .....+.++..+... .+..++.=...++..++.+.++|+-++.-- ++
T Consensus 151 eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl---~~ 227 (326)
T PRK11840 151 EAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL---GA 227 (326)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec---cc
Confidence 344445555554 5677655332 111 123344444444432 134443335678999999999999666431 10
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..-.|.|+.....+....+. .++|||.++||.++.|+.+|+.+|||+|.+.|..+.
T Consensus 228 ----pIGsg~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 228 ----PIGSGLGIQNPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred ----cccCCCCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceecc
Confidence 11133445555666555443 469999999999999999999999999999999863
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=75.00 Aligned_cols=138 Identities=25% Similarity=0.245 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG------- 295 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g------- 295 (505)
++.+.+..+.++|.|.|+||.++|+ + .-..+.++.+|+.++ +.+|.+.
T Consensus 150 ~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~ 229 (341)
T PF00724_consen 150 DFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFV 229 (341)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSS
T ss_pred HHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeeccc
Confidence 3666777888999999999976532 1 245788888888763 4556552
Q ss_pred --ccCCHH---HHHHHHHcCCCEEEEccCCcceeec-ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Q 010640 296 --NVVTMY---QAQNLIEAGVDGLRVGMGSGSICTT-QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 296 --~V~t~e---~a~~l~~aGad~I~v~~g~g~~~~~-~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ka 369 (505)
.....+ .++.+.++|+|++.++.+....... ........+....+..+....+..++|||+.|||.++..+.++
T Consensus 230 ~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~ 309 (341)
T PF00724_consen 230 EGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKA 309 (341)
T ss_dssp TTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHH
Confidence 111223 3677888999998776333221111 1111111111111122223333457999999999999999999
Q ss_pred HHhC-CCEEEecccccC
Q 010640 370 LVLG-ASTVMMGSFLAG 385 (505)
Q Consensus 370 l~lG-A~~V~~G~~f~~ 385 (505)
++-| ||+|.+|++|+.
T Consensus 310 l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 310 LEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHTTSTSEEEESHHHHH
T ss_pred HhcCCceEeeccHHHHh
Confidence 9988 999999999975
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.001 Score=64.22 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc--------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM-------- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~-------- 318 (505)
+..+.+....+.|+.++.+-+...+..+..+.++.+++.. .+||..|.- .++.....+...|+|+|-+-.
T Consensus 67 dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~e~L~~v~~~v-~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l 145 (254)
T COG0134 67 DPVEIAKAYEEGGAAAISVLTDPKYFQGSFEDLRAVRAAV-DLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQL 145 (254)
T ss_pred CHHHHHHHHHHhCCeEEEEecCccccCCCHHHHHHHHHhc-CCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHH
Confidence 4567788888889999988776665666678888888877 789888854 466666666677777663210
Q ss_pred ------------------C----------Ccc--e-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 319 ------------------G----------SGS--I-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 319 ------------------g----------~g~--~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
| .|. + -..|.+..+-+ .+.....+....+ .+..+|+-+||.++.|+.
T Consensus 146 ~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~v-dl~~t~~la~~~p-~~~~~IsESGI~~~~dv~ 223 (254)
T COG0134 146 EELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEV-DLETTEKLAPLIP-KDVILISESGISTPEDVR 223 (254)
T ss_pred HHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchhee-cHHHHHHHHhhCC-CCcEEEecCCCCCHHHHH
Confidence 0 000 0 01122222211 1222223333333 247799999999999999
Q ss_pred HHHHhCCCEEEecccccCC
Q 010640 368 KALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~lGA~~V~~G~~f~~~ 386 (505)
+....||+++.+|+.|+.+
T Consensus 224 ~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 224 RLAKAGADAFLVGEALMRA 242 (254)
T ss_pred HHHHcCCCEEEecHHHhcC
Confidence 9999999999999999764
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00083 Score=67.23 Aligned_cols=141 Identities=26% Similarity=0.252 Sum_probs=90.7
Q ss_pred CCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCC----------C-----CchhHHHHHHHHHHhCCCceEEEcc--
Q 010640 234 DGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQ----------G-----NSSFQIEMIKYAKKTYPELDVIGGN-- 296 (505)
Q Consensus 234 ~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~----------g-----~~~~~~~~i~~l~~~~~~~~Vi~g~-- 296 (505)
+..+++-.....++.. ..+..+++.-+|.|-++..+ | ..+-+-+.+..++..+ +.||-+|-
T Consensus 73 D~PLIvQf~~ndp~~l-l~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l-~~pVs~KIRI 150 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENL-LKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANL-NVPVSVKIRI 150 (358)
T ss_pred CCceEEEEcCCCHHHH-HHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhc-CCCeEEEEEe
Confidence 3344544443333333 33444555545887775432 1 1233456677777776 56665541
Q ss_pred -c---CCHHHHHHHHHcCCCEEEEccCCcceeecccccc--cCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 297 -V---VTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA--VGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 297 -V---~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g--~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
+ .|.+.++.+.++|++.+.| || -++...| .+.-..+++..+++.... +|||+-|+|.+..|+..++
T Consensus 151 ~~d~~kTvd~ak~~e~aG~~~ltV--HG----Rtr~~kg~~~~pad~~~i~~v~~~~~~--ipviaNGnI~~~~d~~~~~ 222 (358)
T KOG2335|consen 151 FVDLEKTVDYAKMLEDAGVSLLTV--HG----RTREQKGLKTGPADWEAIKAVRENVPD--IPVIANGNILSLEDVERCL 222 (358)
T ss_pred cCcHHHHHHHHHHHHhCCCcEEEE--ec----ccHHhcCCCCCCcCHHHHHHHHHhCcC--CcEEeeCCcCcHHHHHHHH
Confidence 1 3788999999999999977 21 1233333 222345567666665433 9999999999999999999
Q ss_pred H-hCCCEEEeccccc
Q 010640 371 V-LGASTVMMGSFLA 384 (505)
Q Consensus 371 ~-lGA~~V~~G~~f~ 384 (505)
. -||++||.|..++
T Consensus 223 ~~tG~dGVM~arglL 237 (358)
T KOG2335|consen 223 KYTGADGVMSARGLL 237 (358)
T ss_pred HHhCCceEEecchhh
Confidence 8 9999999998765
|
|
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00033 Score=57.90 Aligned_cols=76 Identities=13% Similarity=0.058 Sum_probs=60.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKER 252 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~ 252 (505)
+++++++++++.++.+.|.+++.+.+||+|+ |+++|+||..|+.+... . ..+.......+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~---------------~--~~v~~~~~l~~a 64 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR---------------L--VSIHPERSLFDA 64 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee---------------e--EEeCCCCcHHHH
Confidence 5788999999999999999999999999985 69999999999987532 1 122233446677
Q ss_pred HHHHHHcCccEEEEe
Q 010640 253 LEHLVKAGVNVVVLD 267 (505)
Q Consensus 253 ~~~lieaGad~I~i~ 267 (505)
++.+.+.++..+.+-
T Consensus 65 ~~~m~~~~~~~lpVv 79 (98)
T cd04618 65 ALLLLKNKIHRLPVI 79 (98)
T ss_pred HHHHHHCCCCEeeEE
Confidence 778888888887663
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=71.94 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=117.5
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+..+.+..+..+.+.+.+...+-|+.| ..+-|= .+||....... .+++--..-. -...++....
T Consensus 66 i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs--~~~l~~vr~~v-----------~~PvLrKDFI--id~~QI~ea~ 130 (695)
T PRK13802 66 LSDIPDPAALAREYEQGGASAISVLTEGRRFLGS--LDDFDKVRAAV-----------HIPVLRKDFI--VTDYQIWEAR 130 (695)
T ss_pred CCCCCCHHHHHHHHHHcCCcEEEEecCcCcCCCC--HHHHHHHHHhC-----------CCCEEecccc--CCHHHHHHHH
Confidence 345567888899999999999999977 666664 35554443211 1111111100 1234555666
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
..|+|+|.+-...=......++++..++. +..+++ +|.+.++...+.++|++.|-|- .|++..+-+. +
T Consensus 131 ~~GADavLLI~~~L~~~~l~~l~~~a~~l--Gme~Lv-Evh~~~el~~a~~~ga~iiGIN--------nRdL~tf~vd-~ 198 (695)
T PRK13802 131 AHGADLVLLIVAALDDAQLKHLLDLAHEL--GMTVLV-ETHTREEIERAIAAGAKVIGIN--------ARNLKDLKVD-V 198 (695)
T ss_pred HcCCCEeehhHhhcCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHhCCCCEEEEe--------CCCCccceeC-H
Confidence 78999986633211122334444444444 777777 8999999999999999988443 3444433333 2
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCC
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGST 387 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~ 387 (505)
.....+..... .++.+|+.+||.++.|+..+..+|||+|.+|+.|+.+.
T Consensus 199 ~~t~~L~~~ip-~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~ 247 (695)
T PRK13802 199 NKYNELAADLP-DDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATAD 247 (695)
T ss_pred HHHHHHHhhCC-CCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCC
Confidence 23333344443 25788999999999999999999999999999998753
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=61.84 Aligned_cols=133 Identities=23% Similarity=0.348 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cccC--------------------------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GNVV-------------------------- 298 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~V~-------------------------- 298 (505)
...+.++.+.++|.|++.+..+.|.. +.+.+.++.+|+.+ ++|++. ++..
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~-~lPvilfP~~~~~is~~aDavff~svLNS~n~~~i~ga 107 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERT-DLPVILFPGSPSGISPYADAVFFPSVLNSDNPYWIVGA 107 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhc-CCCEEEecCChhccCccCCeEEEEEEecCCCcccccch
Confidence 35688899999999999998888876 67888899998765 777766 2211
Q ss_pred CHHHHHHHHHcCCC----EEEEccCCcceee-c--c------c--------------------ccccCcChHHHHHHHHH
Q 010640 299 TMYQAQNLIEAGVD----GLRVGMGSGSICT-T--Q------E--------------------VCAVGRGQATAVYKVSS 345 (505)
Q Consensus 299 t~e~a~~l~~aGad----~I~v~~g~g~~~~-~--~------~--------------------~~g~g~p~~~~l~~v~~ 345 (505)
..+.+..+...+-. +.++-+.++...+ + + + ..|.|.|.+.....+++
T Consensus 108 q~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~ 187 (240)
T COG1646 108 QVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSR 187 (240)
T ss_pred hhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHH
Confidence 01122222222211 1111111111110 0 0 0 13334444444555555
Q ss_pred HHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 346 IAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 346 ~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.... .|+|..|||++++...+...+|||.+..|+.+
T Consensus 188 v~~~--~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 188 VLSD--TPLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred hhcc--ceEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 4433 59999999999999999989999999999976
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00085 Score=63.00 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.|++.+++. .+.. .. ...+.......++..++.+.+++..+.+.|+|++.++. +..+....+.
T Consensus 66 ~~la~~~g~~GvHl~--~~~~--~~---~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~----v~~t~~k~~~ 134 (196)
T TIGR00693 66 VDLALALGADGVHLG--QDDL--PA---SEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGP----IFPTPTKKDP 134 (196)
T ss_pred HHHHHHcCCCEEecC--cccC--CH---HHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECC----ccCCCCCCCC
Confidence 455667788888762 2211 01 22233331222334478899999899999999998752 1111111110
Q ss_pred -CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 333 -GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 333 -g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
....+..+..+.+.. .++||++.||| +..++.+++.+||++|.+|+.+..+
T Consensus 135 ~~~~g~~~l~~~~~~~--~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~ 186 (196)
T TIGR00693 135 APPAGVELLREIAATS--IDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQA 186 (196)
T ss_pred CCCCCHHHHHHHHHhc--CCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 011234444444332 14899999999 6999999999999999999998753
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00065 Score=77.11 Aligned_cols=133 Identities=20% Similarity=0.222 Sum_probs=86.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCC-CceEEEc-c------
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYP-ELDVIGG-N------ 296 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g-~------ 296 (505)
+.+.++.+.++|.|.|.|+..+|+ .....+.++.+|+.++ +.||.++ +
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 344456677899999999875421 1345788888888873 5666653 1
Q ss_pred -cCCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 297 -VVTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 297 -V~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
-.+. +.++.+.++|+|+|.|+.|..... .....+-+ .+.. .+.+..+..++|||+.|+|.++.++.+++.
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~-~~~~---~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~ 707 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKD-EKPVYGRM-YQTP---FADRIRNEAGIATIAVGAISEADHVNSIIA 707 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcC-CCCCcCcc-ccHH---HHHHHHHHcCCEEEEeCCCCCHHHHHHHHH
Confidence 1123 455778889999999974321100 00000001 0111 122333345799999999999999999999
Q ss_pred hC-CCEEEecccccCC
Q 010640 372 LG-ASTVMMGSFLAGS 386 (505)
Q Consensus 372 lG-A~~V~~G~~f~~~ 386 (505)
-| ||+|++|+.|+.-
T Consensus 708 ~g~~D~v~~gR~~l~d 723 (765)
T PRK08255 708 AGRADLCALARPHLAD 723 (765)
T ss_pred cCCcceeeEcHHHHhC
Confidence 77 9999999999864
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0029 Score=60.59 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCCc--eEEE-cccCCHHH----HHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPEL--DVIG-GNVVTMYQ----AQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~~--~Vi~-g~V~t~e~----a~~l~~aGad~I~v 316 (505)
-...++.+++.|++-+.+... .|+...+.+.++.+++...+. .||. ....+.++ .+.+.++|+|+|..
T Consensus 76 K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKT 155 (221)
T PRK00507 76 KAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKT 155 (221)
T ss_pred HHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEc
Confidence 445667778889888765432 244556777777777764332 3333 22234333 35577799999987
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.|-+ .+..++..+...++... .+++|.++|||++..|+...+.+||+-++..+.
T Consensus 156 sTG~~----------~~gat~~~v~~m~~~~~-~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 156 STGFS----------TGGATVEDVKLMRETVG-PRVGVKASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred CCCCC----------CCCCCHHHHHHHHHHhC-CCceEEeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 64311 11244555555555443 359999999999999999999999998776544
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.001 Score=68.44 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhC-CCceEEEc-cc----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTY-PELDVIGG-NV---- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~-~~~~Vi~g-~V---- 297 (505)
++.+.+..+.++|.|.|.||.++|+ ..-..+.++.+|+.+ ++.||.++ +.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~ 224 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQ 224 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccc
Confidence 3556677788899999999976521 134578888889887 45677652 10
Q ss_pred -------CCHHH----HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCC------
Q 010640 298 -------VTMYQ----AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI------ 360 (505)
Q Consensus 298 -------~t~e~----a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI------ 360 (505)
.+.++ ++.+.++|+|+|.++.+. .+ .....++. .... ....+..++||++.|||
T Consensus 225 ~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~--~~-~~~~~~~~---~~~~---~~~k~~~~~pv~~~G~i~~~~~~ 295 (361)
T cd04747 225 DYTARLADTPDELEALLAPLVDAGVDIFHCSTRR--FW-EPEFEGSE---LNLA---GWTKKLTGLPTITVGSVGLDGDF 295 (361)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC--cc-CCCcCccc---hhHH---HHHHHHcCCCEEEECCccccccc
Confidence 23333 344578999999886431 11 11111211 1111 22223357999999999
Q ss_pred ------------CCHHHHHHHHHhC-CCEEEecccccCC
Q 010640 361 ------------SNSGHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 361 ------------~~~~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
.++.++.+++.-| ||+|++|+.|+.-
T Consensus 296 ~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad 334 (361)
T cd04747 296 IGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD 334 (361)
T ss_pred ccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC
Confidence 5999999999977 9999999998753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0036 Score=60.62 Aligned_cols=119 Identities=21% Similarity=0.219 Sum_probs=77.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhC--CCceEEEcccC----------CHHH----HHHHHHcC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTY--PELDVIGGNVV----------TMYQ----AQNLIEAG 310 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~--~~~~Vi~g~V~----------t~e~----a~~l~~aG 310 (505)
....++.+++.|++.+.+....+. .....+.++.+++.. .++++++ ++. +.+. ++.+.++|
T Consensus 78 ~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~ii-e~~~~g~~~~~~~~~~~i~~~~~~a~~~G 156 (235)
T cd00958 78 LVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIA-WMYPRGPAVKNEKDPDLIAYAARIGAELG 156 (235)
T ss_pred hhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCCcccCccCHHHHHHHHHHHHHHC
Confidence 445578888999998865544332 233444555555422 1678877 331 2232 55588899
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCC--CCHHH----HHHHHHhCCCEEEeccccc
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI--SNSGH----IVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI--~~~~d----i~kal~lGA~~V~~G~~f~ 384 (505)
+|+|.+... +.++.+.++ ++...+||+++||+ .+..| +..++.+||++|.+|+.+.
T Consensus 157 aD~Ik~~~~---------------~~~~~~~~i---~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~ 218 (235)
T cd00958 157 ADIVKTKYT---------------GDAESFKEV---VEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIF 218 (235)
T ss_pred CCEEEecCC---------------CCHHHHHHH---HhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhh
Confidence 999976410 123334333 33456899999987 56665 8888999999999999886
Q ss_pred CC
Q 010640 385 GS 386 (505)
Q Consensus 385 ~~ 386 (505)
.+
T Consensus 219 ~~ 220 (235)
T cd00958 219 QR 220 (235)
T ss_pred cC
Confidence 43
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.001 Score=70.35 Aligned_cols=122 Identities=25% Similarity=0.400 Sum_probs=81.5
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCC-HHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVT-MYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t-~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..++.+.++|++.++++.... .....+.++.+++. +.+++.+ +..+ .+.++.+.+.|+|+|.+.. |. +.
T Consensus 72 ~~v~~a~~aGAdgV~v~g~~~-~~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p--g~---~~ 143 (430)
T PRK07028 72 IEVEMAAKAGADIVCILGLAD-DSTIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVHV--GI---DQ 143 (430)
T ss_pred HHHHHHHHcCCCEEEEecCCC-hHHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe--cc---ch
Confidence 478889999999998764321 11234556666664 6777764 4433 5667888899999996642 11 11
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.. .+...+..+. +.....++||++.||| +...+..++.+||+++.+|+.+...
T Consensus 144 ~~--~~~~~~~~l~---~l~~~~~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 144 QM--LGKDPLELLK---EVSEEVSIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred hh--cCCChHHHHH---HHHhhCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC
Confidence 11 1111233333 3333456999999999 7899999999999999999998653
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0011 Score=68.61 Aligned_cols=134 Identities=15% Similarity=0.147 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhC-CCceEEEc----c--
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTY-PELDVIGG----N-- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~-~~~~Vi~g----~-- 296 (505)
++.+.++.+.++|.|.|.||..+|+ .....+.++.+|+.+ ++.+|.+. +
T Consensus 151 ~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~ 230 (370)
T cd02929 151 WYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELI 230 (370)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhc
Confidence 3556677888899999999876531 134578888899887 35566552 1
Q ss_pred ----cCCHHHH----HHHHHcCCCEEEEccCCcce-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 297 ----VVTMYQA----QNLIEAGVDGLRVGMGSGSI-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 297 ----V~t~e~a----~~l~~aGad~I~v~~g~g~~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
..+.+++ +.+.+ .+|++.++.|.-.. .........+. ... .+.+..+..++|||+.|||.++.++.
T Consensus 231 ~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~-~~~---~~~~ik~~~~~pvi~~G~i~~~~~~~ 305 (370)
T cd02929 231 GPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGH-QEP---YIKFVKQVTSKPVVGVGRFTSPDKMV 305 (370)
T ss_pred CCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCccc-cHH---HHHHHHHHCCCCEEEeCCCCCHHHHH
Confidence 0134433 44443 48999987542110 00000100010 112 22233334679999999999999999
Q ss_pred HHHHhC-CCEEEecccccCC
Q 010640 368 KALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~lG-A~~V~~G~~f~~~ 386 (505)
+++..| ||+|++|++|+.-
T Consensus 306 ~~l~~g~~D~V~~gR~~lad 325 (370)
T cd02929 306 EVVKSGILDLIGAARPSIAD 325 (370)
T ss_pred HHHHcCCCCeeeechHhhhC
Confidence 999988 9999999999864
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0052 Score=60.41 Aligned_cols=125 Identities=16% Similarity=0.155 Sum_probs=77.5
Q ss_pred HHHHHHHHHHcCccEEEEeC-CCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-cc-CCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDS-SQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GM-GSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~-~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~-g~g~~~~ 325 (505)
....++.+.++|+|.+.+.. +. +...+..+.+++.--....++...++.+..+.+.+..-.+|.+ +. |-++..
T Consensus 108 ~e~F~~~~~~aGvdgviipDLP~---ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~- 183 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDLPY---EESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLK- 183 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCCCH---HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCC-
Confidence 44678888999999998733 32 2334555555554211122334445677777777765546654 42 211111
Q ss_pred cccccccCcChHHHHHHHH-HHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 326 TQEVCAVGRGQATAVYKVS-SIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~-~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. .....+.+.. +..+..+.||...+||.+++++.++...|||+|.+||+|+.
T Consensus 184 ----~----~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 184 ----T----ELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred ----c----cccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0 0111122222 22224579999999999999999999999999999999963
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0046 Score=60.28 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=96.7
Q ss_pred EecCCCCHHHHHHHHHHCCC-CeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDV-DFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i-~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
.+..+.++.++++++.+.+- ..+|++ +.|..+.+... -..+.++.+
T Consensus 56 AL~~G~~~~~~~~~~~~~r~~~~~p~i-------lm~Y~N~i~~~--------------------------G~~~F~~~~ 102 (250)
T PLN02591 56 ALEKGTTLDSVISMLKEVAPQLSCPIV-------LFTYYNPILKR--------------------------GIDKFMATI 102 (250)
T ss_pred HHHcCCCHHHHHHHHHHHhcCCCCCEE-------EEecccHHHHh--------------------------HHHHHHHHH
Confidence 45667788888888887432 123432 33443333211 144678888
Q ss_pred HHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-cc-CCcceeecccccc
Q 010640 257 VKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-GM-GSGSICTTQEVCA 331 (505)
Q Consensus 257 ieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~~-g~g~~~~~~~~~g 331 (505)
.++|++.+.+ |.+. +...+..+..++. ++.. ++..-.+.+..+.+.+..-.+|.+ +. |-++.. .+
T Consensus 103 ~~aGv~GviipDLP~---ee~~~~~~~~~~~--gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~-----~~ 172 (250)
T PLN02591 103 KEAGVHGLVVPDLPL---EETEALRAEAAKN--GIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR-----AS 172 (250)
T ss_pred HHcCCCEEEeCCCCH---HHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC-----cC
Confidence 9999999877 3322 2334444445454 4433 233444566777777777777765 42 211111 01
Q ss_pred cCcChHH-HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRGQAT-AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p~~~-~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+. +.+. .+..+++ ..++||+..-||.+++|+.+++.+|||+|.+||.|..
T Consensus 173 ~~-~~~~~~i~~vk~---~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 173 VS-GRVESLLQELKE---VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred Cc-hhHHHHHHHHHh---cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 11 1122 2333333 3579999977999999999999999999999999863
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=67.32 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc----c---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG----N--- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g----~--- 296 (505)
++.+.++.+.++|.|.|+||.++|+ + +-.++.++.+|+.++.-.|.+. +
T Consensus 160 ~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~ 239 (362)
T PRK10605 160 DFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFN 239 (362)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccc
Confidence 3566677888999999999875532 1 3457888888888743234331 0
Q ss_pred -c---CCHHH-----HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 297 -V---VTMYQ-----AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 297 -V---~t~e~-----a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
. .+.++ ++.|.+.|+|+|.|+.+. .. .+...+ .....+..+..++||++.|++ ++..+.
T Consensus 240 ~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~--~~-----~~~~~~----~~~~~~ik~~~~~pv~~~G~~-~~~~ae 307 (362)
T PRK10605 240 NVDNGPNEEADALYLIEQLGKRGIAYLHMSEPD--WA-----GGEPYS----DAFREKVRARFHGVIIGAGAY-TAEKAE 307 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCEEEecccc--cc-----CCcccc----HHHHHHHHHHCCCCEEEeCCC-CHHHHH
Confidence 1 23333 567778899999997421 10 011111 111123333457899999886 999999
Q ss_pred HHHHhC-CCEEEecccccCC
Q 010640 368 KALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~lG-A~~V~~G~~f~~~ 386 (505)
+++.-| ||+|.+|++|+.-
T Consensus 308 ~~i~~G~~D~V~~gR~~iad 327 (362)
T PRK10605 308 TLIGKGLIDAVAFGRDYIAN 327 (362)
T ss_pred HHHHcCCCCEEEECHHhhhC
Confidence 999998 9999999999864
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0021 Score=60.31 Aligned_cols=121 Identities=25% Similarity=0.281 Sum_probs=83.7
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
++.+|+..-. ..+.++.++++|+++++- .+.. .+.++..++. +++.+. ++.|+.++..+.++|++.++
T Consensus 55 ~~~vGAGTVl---~~e~a~~ai~aGA~FivS---P~~~---~~vi~~a~~~--~i~~iP-G~~TptEi~~A~~~Ga~~vK 122 (201)
T PRK06015 55 EAIVGAGTIL---NAKQFEDAAKAGSRFIVS---PGTT---QELLAAANDS--DVPLLP-GAATPSEVMALREEGYTVLK 122 (201)
T ss_pred CCEEeeEeCc---CHHHHHHHHHcCCCEEEC---CCCC---HHHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEE
Confidence 4677776432 457788999999999963 3322 3555555655 788776 68999999999999999998
Q ss_pred EccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- ..-. |...+.++ +.-. -++|+++.|||.- .++...|++|+.++..|+.+.
T Consensus 123 ~FP----------a~~~GG~~yikal---~~pl--p~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 123 FFP----------AEQAGGAAFLKAL---SSPL--AGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred ECC----------chhhCCHHHHHHH---HhhC--CCCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 720 0001 11222222 2222 2599999999855 799999999988888888764
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00091 Score=64.22 Aligned_cols=128 Identities=23% Similarity=0.393 Sum_probs=78.7
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cccC------------------C--------HH
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GNVV------------------T--------MY 301 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~V~------------------t--------~e 301 (505)
+.++.+.+.|.|++.+..+.|.. ..+.+.++.+|+ + ++|++. |+.. + .+
T Consensus 23 ~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~-~-~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~~~ 100 (232)
T PRK04169 23 EALEAICESGTDAIIVGGSDGVTEENVDELVKAIKE-Y-DLPVILFPGNIEGISPGADAYLFPSVLNSRNPYWIIGAHVE 100 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCCccchHHHHHHHHHHhc-C-CCCEEEeCCCccccCcCCCEEEEEEEecCCCcchHhhHHHH
Confidence 44577889999999998888765 466778888888 5 677765 3221 0 11
Q ss_pred HHHHHHHcCCC-----EEEEccCCcce---eeccc--------------------------ccccC--c-ChHHHHHHHH
Q 010640 302 QAQNLIEAGVD-----GLRVGMGSGSI---CTTQE--------------------------VCAVG--R-GQATAVYKVS 344 (505)
Q Consensus 302 ~a~~l~~aGad-----~I~v~~g~g~~---~~~~~--------------------------~~g~g--~-p~~~~l~~v~ 344 (505)
.+..+...|-. ++++. .++.. ..+.. ..+.+ . +..+.+..++
T Consensus 101 ~~~~~~~~~le~ip~gYiv~~-~~~~va~~~~~~~~~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~ 179 (232)
T PRK04169 101 AAPIIKKGGLEVIPEGYIVLN-PGSKVAVVGTAAPIPLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVK 179 (232)
T ss_pred HHHHHhhcCcEECceEEEEEC-CCCeeeeeeccccCCCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHH
Confidence 22223222332 22222 11111 11100 11122 2 2244554444
Q ss_pred HHHhhcCC-cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 345 SIAAQSGV-PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 345 ~~~~~~~i-pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ ..+. |++..|||++.+++.+++.+|||+|.+|+.|.
T Consensus 180 ~---~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 180 K---ALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred H---hcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHh
Confidence 4 3456 99999999999999999999999999999985
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0016 Score=64.33 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=76.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhC--CCceEEEc---------ccCCHHH----HHHHHHcCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTY--PELDVIGG---------NVVTMYQ----AQNLIEAGV 311 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~--~~~~Vi~g---------~V~t~e~----a~~l~~aGa 311 (505)
....++.+++.|++.+.+....+. .....+.++.+++.+ .++|+++- +..+.+. ++.+.++|+
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 345577889999998877654432 234555555555443 16676551 1123333 577788999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC--CHHHHHHH----HHhCCCEEEecccccC
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS--NSGHIVKA----LVLGASTVMMGSFLAG 385 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~--~~~di~ka----l~lGA~~V~~G~~f~~ 385 (505)
|+|+.+.. +.+..+.++. +..++||+++|||. |..++.+. +.+||+++.+|+.+..
T Consensus 175 D~vKt~~~---------------~~~~~l~~~~---~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 175 DIVKTNYT---------------GDPESFREVV---EGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred CEEeeCCC---------------CCHHHHHHHH---HhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 99977521 1234444433 33469999999999 66655555 5999999999998764
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0019 Score=61.18 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC-----CchhHHHHHHHHHHhCCCceEEE---cccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG-----NSSFQIEMIKYAKKTYPELDVIG---GNVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g-----~~~~~~~~i~~l~~~~~~~~Vi~---g~V~t~e----~a~~l~~aGad~I~v 316 (505)
....++.+++.|+|.+.+....| +...+.+.+..+++...+.|+.+ ....+.+ .++.+.++|+|+|+.
T Consensus 71 k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 71 KVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKT 150 (203)
T ss_pred HHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEc
Confidence 44557788889999998765443 33557788888888765555433 2223433 357788899999988
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
+.|-+. +..++..+...++..+ .++||-++|||++..++.+.+.+||+-.+
T Consensus 151 sTG~~~----------~~at~~~v~~~~~~~~-~~v~ik~aGGikt~~~~l~~~~~g~~riG 201 (203)
T cd00959 151 STGFGP----------GGATVEDVKLMKEAVG-GRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCCCCC----------CCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhChhhcc
Confidence 743210 1133444444445444 56999999999999999999999997543
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00093 Score=67.50 Aligned_cols=188 Identities=13% Similarity=0.180 Sum_probs=118.6
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----cccccccccccCCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----NKVKIFDYMRDCSS 175 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----~~~~v~~im~~~~~ 175 (505)
-++++|+.++ ++.+.+.+++++.+++++ +. +||+|+ +|+++-+|++.||....+ ....-.++|.. .
T Consensus 172 ~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~gelva~~~rtDl~k~~~yPlask~~~kqll~g--A 244 (503)
T KOG2550|consen 172 LVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDD---KGELVAMLSRTDLMKNRDYPLASKDSTKQLLCG--A 244 (503)
T ss_pred hhhhhccccc--ccccccccHHHHHHHHHhhhcCCcceecc---CCceeeeeehhhhhhhcCCCccccCcccceeee--e
Confidence 4556888888 999999999999999988 44 999998 999999999999963321 11122233322 1
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcce-EEEeecCCccHHHH
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWM-VGAAIGTRESDKER 252 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~-v~a~i~~~~~~~e~ 252 (505)
.+.-.+.-.+-++++.+.+++. .|+|. |.-+=-| ..++.... .=+.+. ++.++. ..+.
T Consensus 245 --aiGTre~dK~rl~ll~~aGvdv-viLDSSqGnS~~qi---emik~iK~---------~yP~l~ViaGNVV----T~~q 305 (503)
T KOG2550|consen 245 --AIGTRDDDKERLDLLVQAGVDV-VILDSSQGNSIYQL---EMIKYIKE---------TYPDLQIIAGNVV----TKEQ 305 (503)
T ss_pred --ccccccchhHHHHHhhhcCCcE-EEEecCCCcchhHH---HHHHHHHh---------hCCCceeecccee----eHHH
Confidence 1222333456677888888874 45554 4321111 11121111 111222 333332 4578
Q ss_pred HHHHHHcCccEEEEeC------------CCCCch-hHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 253 LEHLVKAGVNVVVLDS------------SQGNSS-FQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 253 ~~~lieaGad~I~i~~------------~~g~~~-~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++.|+.+|+|.+-+.. +.|.+. ...-.+.+....+ ++|+|+ |++.+..+..++..+|++.+..+
T Consensus 306 a~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 306 AANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQF-GVPCIADGGIQNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred HHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhc-CCceeecCCcCccchhHhhhhcCchhheec
Confidence 8999999999987754 223331 1222333344454 899999 78888888889999999988875
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=67.36 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=73.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.++|.+++.- ... . +...++....-.++..++.+.+++..+.+.|+|+|.+|- +..+....+.
T Consensus 210 vdlAl~~~aDGVHLgq--~dl--~---~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGP----vf~T~tKp~~ 278 (347)
T PRK02615 210 VDIALAVDADGVHLGQ--EDL--P---LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGP----VFPTPTKPGK 278 (347)
T ss_pred HHHHHHcCCCEEEeCh--hhc--C---HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECC----CcCCCCCCCC
Confidence 4445566777776621 110 0 222344331223444477899999999999999998761 1111111111
Q ss_pred CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
....+..+..+ +....+|+++-||| +..++.+.+.+||++|.+++.+..
T Consensus 279 ~~~Gle~l~~~---~~~~~iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 279 APAGLEYLKYA---AKEAPIPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred CCCCHHHHHHH---HHhCCCCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhC
Confidence 11123333333 33457999999999 589999999999999999998864
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0066 Score=59.53 Aligned_cols=123 Identities=20% Similarity=0.197 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-c-cCCcce
Q 010640 249 DKERLEHLVKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-G-MGSGSI 323 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~-~g~g~~ 323 (505)
..+.++.+.++|++.+.+ |.+. ....+.+..+++. ++.. ++..-.+.+..+.+.+...++|.+ + .|-++.
T Consensus 106 ~e~f~~~~~~aGvdGviipDLp~---ee~~~~~~~~~~~--gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~ 180 (258)
T PRK13111 106 VERFAADAAEAGVDGLIIPDLPP---EEAEELRAAAKKH--GLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA 180 (258)
T ss_pred HHHHHHHHHHcCCcEEEECCCCH---HHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCc
Confidence 446788899999999877 2221 2334455555554 3322 244555678888888888888865 4 221211
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. .+...+....+..+++ ..++||+..+||.++.++.+++.. ||+|.+||.|..
T Consensus 181 ~-----~~~~~~~~~~i~~vk~---~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 181 R-----SADAADLAELVARLKA---HTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred c-----cCCCccHHHHHHHHHh---cCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 1 1111122234444444 347999999999999999999986 999999999964
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0024 Score=60.00 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=61.9
Q ss_pred ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Q 010640 290 LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 290 ~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ka 369 (505)
-.|+.=.-.++-.+++|.++||.++.=... ..-.|.|+-+...+..+.+ +.++|||.|-||.++.|.+.|
T Consensus 131 F~VlPY~~dD~v~arrLee~GcaavMPl~a-------PIGSg~G~~n~~~l~iiie---~a~VPviVDAGiG~pSdAa~a 200 (262)
T COG2022 131 FVVLPYTTDDPVLARRLEEAGCAAVMPLGA-------PIGSGLGLQNPYNLEIIIE---EADVPVIVDAGIGTPSDAAQA 200 (262)
T ss_pred CEEeeccCCCHHHHHHHHhcCceEeccccc-------cccCCcCcCCHHHHHHHHH---hCCCCEEEeCCCCChhHHHHH
Confidence 334433345778899999999998853211 1112234444444544444 347999999999999999999
Q ss_pred HHhCCCEEEecccccCC
Q 010640 370 LVLGASTVMMGSFLAGS 386 (505)
Q Consensus 370 l~lGA~~V~~G~~f~~~ 386 (505)
+.+|+|+|.+-|+.+.+
T Consensus 201 MElG~DaVL~NTAiA~A 217 (262)
T COG2022 201 MELGADAVLLNTAIARA 217 (262)
T ss_pred HhcccceeehhhHhhcc
Confidence 99999999999998754
|
|
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00032 Score=68.45 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=101.3
Q ss_pred HHHHHHHHHcC--ccEEEEeCCCCCchh---------HHHHHHHHHHh---C---CCceEEEcccCC------HHHHHHH
Q 010640 250 KERLEHLVKAG--VNVVVLDSSQGNSSF---------QIEMIKYAKKT---Y---PELDVIGGNVVT------MYQAQNL 306 (505)
Q Consensus 250 ~e~~~~lieaG--ad~I~i~~~~g~~~~---------~~~~i~~l~~~---~---~~~~Vi~g~V~t------~e~a~~l 306 (505)
.+.++-....| +|+++++.+..+..+ ..+.+...... . ...|+.++-..+ -+-+...
T Consensus 196 ~dy~~gV~~~g~~adylviNvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~ 275 (398)
T KOG1436|consen 196 LDYVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVV 275 (398)
T ss_pred HHHHHHhhhcccccceEEEeccCCCCcchhhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHH
Confidence 33444333333 788888876654321 12222222221 1 133666653321 1234445
Q ss_pred HHcCCCEEEEccCCcc-------eeecccccccCcChHH--HHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 307 IEAGVDGLRVGMGSGS-------ICTTQEVCAVGRGQAT--AVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~-------~~~~~~~~g~g~p~~~--~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
.+++.|.+++++---+ .....+..|.+.|.+. ++..+++...- -+||||..|||.++.|..+-+.+||+
T Consensus 276 kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGAS 355 (398)
T KOG1436|consen 276 KKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGAS 355 (398)
T ss_pred HHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcCch
Confidence 6789999988742110 0011123444444333 23333333222 25999999999999999999999999
Q ss_pred EEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHH
Q 010640 376 TVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAV 455 (505)
Q Consensus 376 ~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l 455 (505)
.||++|.|.. +|+ .+++++..+|
T Consensus 356 lvQlyTal~y----------------------------------------------eGp-----------~i~~kIk~El 378 (398)
T KOG1436|consen 356 LVQLYTALVY----------------------------------------------EGP-----------AIIEKIKREL 378 (398)
T ss_pred HHHHHHHHhh----------------------------------------------cCc-----------hhHHHHHHHH
Confidence 9999998831 221 5778899999
Q ss_pred HHHhhccCCCCHHHHHHh
Q 010640 456 KQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 456 ~~~m~~~G~~~~~~l~~~ 473 (505)
...|.-.|..++.++..+
T Consensus 379 ~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 379 SALLKAKGFTSVDDAIGK 396 (398)
T ss_pred HHHHHhcCCCcHHHhccC
Confidence 999999999999988654
|
|
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00075 Score=55.42 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=57.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERL 253 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~ 253 (505)
+++++.+++++.++++.|.+.++..+||+|+ |+++|++|.+|++..... . .+.......+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~---------------~--~v~~~~~l~~a~ 64 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKSEV---------------V--TATKRTTVSECA 64 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCCCc---------------E--EecCCCCHHHHH
Confidence 5778899999999999999999999999998 999999999999875321 1 121223345666
Q ss_pred HHHHHcCccEEEE
Q 010640 254 EHLVKAGVNVVVL 266 (505)
Q Consensus 254 ~~lieaGad~I~i 266 (505)
+.+.+.+...+.+
T Consensus 65 ~~m~~~~~~~lpV 77 (96)
T cd04614 65 QKMKRNRIEQIPI 77 (96)
T ss_pred HHHHHhCCCeeeE
Confidence 7777778876654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0043 Score=59.41 Aligned_cols=128 Identities=14% Similarity=0.182 Sum_probs=82.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~ 326 (505)
+....++.+.++|++.+.+|.... ....+.++.+|+.--..-+....-+..+....+.. -+|.+.+ +..+|....
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~--~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~-~~D~vlvMtV~PGfgGq- 144 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEAS--EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD-KVDLILLMSVNPGFGGQ- 144 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH-hCCeEEEEEecCCCCCc-
Confidence 356788899999999999987532 23456777777762122233333345566665555 3676655 433332111
Q ss_pred ccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. +-..+++-+.++++...+. ++||.++|||. ...+.+...+|||.+.+||.+.
T Consensus 145 -~---fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 145 -S---FIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred -e---ecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 1 1112344555555554432 48999999998 8899999999999999999864
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0051 Score=58.47 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=80.9
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+++..-.. .+.++.++++|++++.. .+... +.++..++. +++.+. ++.|+.++..+.++|++.++
T Consensus 66 ~~~IGAGTVl~---~~~a~~a~~aGA~Fivs---P~~~~---~vi~~a~~~--~i~~iP-G~~TptEi~~a~~~Ga~~vK 133 (212)
T PRK05718 66 EALIGAGTVLN---PEQLAQAIEAGAQFIVS---PGLTP---PLLKAAQEG--PIPLIP-GVSTPSELMLGMELGLRTFK 133 (212)
T ss_pred CCEEEEeeccC---HHHHHHHHHcCCCEEEC---CCCCH---HHHHHHHHc--CCCEeC-CCCCHHHHHHHHHCCCCEEE
Confidence 45677665332 37788999999999964 22222 555555565 678766 68899999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+= ++ ... + |...+.++ +... -++|+++.|||.- .++...+.+|+..+..|+.+.
T Consensus 134 lF--Pa-----~~~-g-g~~~lk~l---~~p~--p~~~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 134 FF--PA-----EAS-G-GVKMLKAL---AGPF--PDVRFCPTGGISP-ANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred Ec--cc-----hhc-c-CHHHHHHH---hccC--CCCeEEEeCCCCH-HHHHHHHhCCCEEEEEChHhC
Confidence 71 10 001 0 12222222 2222 2489999999854 899999999976666676653
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0052 Score=58.72 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
...+..+.++.+.++|++++.+....+...+..+.++.+++.. ++||+.++. .+.+.++.+.++|+|++.++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~----- 102 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAVLLIV----- 102 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEEEEee-----
Confidence 3456889999999999999988654444434557777777775 799988654 466789999999999997752
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
. ..+. ..+.++.+.+...++.++. .+.+..++.++..+|++.+.++..
T Consensus 103 ---~-----~~~~-~~~~~~~~~~~~~g~~~~v--~v~~~~e~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 103 ---A-----ALDD-EQLKELYELARELGMEVLV--EVHDEEELERALALGAKIIGINNR 150 (217)
T ss_pred ---c-----cCCH-HHHHHHHHHHHHcCCeEEE--EECCHHHHHHHHHcCCCEEEEeCC
Confidence 1 1122 4445555555566777766 668999999999999999988743
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.002 Score=61.38 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cccC------------------C--------
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GNVV------------------T-------- 299 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~V~------------------t-------- 299 (505)
..+.++.+.+.|.|++.+..+.|.. .++.+.++.+|+. .+|++. |+.. +
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~--~lPvilfp~~~~~i~~~aDa~l~~svlNs~~~~~iig~~ 93 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRY--GLPIILFPSNPTNVSRDADALFFPSVLNSDDPYWIIGAQ 93 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhcc--CCCEEEeCCCccccCcCCCEEEEEEeecCCCchHHHhHH
Confidence 5578888999999999998888755 5666678888864 477764 3221 1
Q ss_pred HHHHHHHHHcCC-----CEEEEccCCccee---eccc--------------------------c--cccCcCh-HHHHHH
Q 010640 300 MYQAQNLIEAGV-----DGLRVGMGSGSIC---TTQE--------------------------V--CAVGRGQ-ATAVYK 342 (505)
Q Consensus 300 ~e~a~~l~~aGa-----d~I~v~~g~g~~~---~~~~--------------------------~--~g~g~p~-~~~l~~ 342 (505)
.+.+..+.+.+- -++++..+ +... .++. . .+.|.|. .+.+..
T Consensus 94 ~~~~~~~~~~~~e~ip~gYiv~~~~-~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~~e~i~~ 172 (223)
T TIGR01768 94 IEAAPKFKKIGEEIIPEGYIIVNPG-GAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVPPELVAE 172 (223)
T ss_pred HHHHHHHhhhcceecceEEEEECCC-cceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcCHHHHHH
Confidence 112222222221 12222211 1110 0000 1 2233222 334444
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+++... ++|++..|||++.+++.+++.+|||.|.+|+.+.
T Consensus 173 v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 173 VKKVLD--KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIE 212 (223)
T ss_pred HHHHcC--CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHh
Confidence 444321 6999999999999999999999999999999874
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0016 Score=64.34 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--CCcE
Q 010640 277 IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--GVPV 354 (505)
Q Consensus 277 ~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--~ipv 354 (505)
.+.++.+|+..|..++.+ ++.|.+++..+.++|+|+|.++. .. | +.+.++.+..+.. ++|+
T Consensus 171 ~~av~~~R~~~~~~~IgV-ev~t~eea~~A~~~gaD~I~ld~----~~----------p--~~l~~~~~~~~~~~~~i~i 233 (272)
T cd01573 171 LKALARLRATAPEKKIVV-EVDSLEEALAAAEAGADILQLDK----FS----------P--EELAELVPKLRSLAPPVLL 233 (272)
T ss_pred HHHHHHHHHhCCCCeEEE-EcCCHHHHHHHHHcCCCEEEECC----CC----------H--HHHHHHHHHHhccCCCceE
Confidence 567777787776665555 78899999999999999997752 00 1 1223333333322 5899
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+++||| +...+......|+|++.+|..+
T Consensus 234 ~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 234 AAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred EEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 999999 9999999999999999888764
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=63.87 Aligned_cols=123 Identities=22% Similarity=0.201 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhC--CCceEEEcccCCH-------------HHHHHHHHc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTY--PELDVIGGNVVTM-------------YQAQNLIEA 309 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~--~~~~Vi~g~V~t~-------------e~a~~l~~a 309 (505)
...++.+++.|+|.+.+.... +......+.+..+++.+ -.+|+|+-..... ..++.+.++
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHh
Confidence 567788899999998665432 33345556666665543 2567777433332 335777889
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc----EEecCCC------CCHHHHHHHHHhCC--CEE
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP----VIADGGI------SNSGHIVKALVLGA--STV 377 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip----vIa~GGI------~~~~di~kal~lGA--~~V 377 (505)
|+|+|+.+.+. . ...+...+...++..+...+| |.++||+ ++..++.+.+.+|| .++
T Consensus 159 GaD~vKt~tg~----------~-~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~ 227 (236)
T PF01791_consen 159 GADFVKTSTGK----------P-VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGT 227 (236)
T ss_dssp T-SEEEEE-SS----------S-SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEE
T ss_pred CCCEEEecCCc----------c-ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHH
Confidence 99999987431 0 124555566666777666788 9999999 99999999999999 777
Q ss_pred Eecccc
Q 010640 378 MMGSFL 383 (505)
Q Consensus 378 ~~G~~f 383 (505)
..|+.+
T Consensus 228 ~~Gr~i 233 (236)
T PF01791_consen 228 SSGRNI 233 (236)
T ss_dssp EEHHHH
T ss_pred HHHHHH
Confidence 777654
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0082 Score=56.99 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCCceEEE---cccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPELDVIG---GNVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~~~Vi~---g~V~t~e----~a~~l~~aGad~I~v 316 (505)
....++.+++.|+|.+.+.... |+.....+.++.+++...+.|+.+ ....+.+ .++.+.++|+|+|+.
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 4456677888999998765433 445667778888887764454433 1223323 346677899999998
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.|-+. +..++..+...++..+. ++||-++|||++..++.+.+.+||+-++.
T Consensus 152 sTGf~~----------~gat~~dv~~m~~~v~~-~v~IKaaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 152 STGFGA----------GGATVEDVRLMRNTVGD-TIGVKASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCCCCC----------CCCCHHHHHHHHHHhcc-CCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence 743210 11233444444444432 69999999999999999999999985543
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0029 Score=60.64 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=73.5
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
.+.+.+.|+|.+++. .... .+...++.. ++..|.+....+.+++..+.+.|+|++.+|- +.++ ...+
T Consensus 80 ~dlA~~~~adGVHLg--~~d~-----~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gp----v~t~-tK~~ 147 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLA-----ALAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGK----LGAD-NKPE 147 (221)
T ss_pred HHHHHHhCCCEEEEC--cccc-----CHHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECC----CCCC-CCCC
Confidence 555667788888772 2111 123444443 2333333335678888888899999997761 2111 1111
Q ss_pred cCcC-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRG-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..| .+..+..+ ++..++||++-||| +..++..++..||++|.+-+.+..
T Consensus 148 -~~p~gl~~l~~~---~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 148 -AHPRNLSLAEWW---AEMIEIPCIVQAGS-DLASAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred -CCCCChHHHHHH---HHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhC
Confidence 112 23333333 34457999999999 999999999999999999888764
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0057 Score=57.92 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc-cCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG-MGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~ 326 (505)
..+.++.+.+.|+|.+.++... .......++.+++. +..++.. +..+..........++|.+... ..+|...
T Consensus 68 ~~~~~~~~~~~gadgv~vh~~~--~~~~~~~~~~~~~~--g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg-- 141 (210)
T TIGR01163 68 PDRYIEDFAEAGADIITVHPEA--SEHIHRLLQLIKDL--GAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGG-- 141 (210)
T ss_pred HHHHHHHHHHcCCCEEEEccCC--chhHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCc--
Confidence 3466888889999999886532 22344555555555 3333332 2334444444445678987653 1111100
Q ss_pred ccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+....+..+.++++...+. ++|++++|||. ..++.+++..||+++.+|+.+..
T Consensus 142 ---~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 142 ---QKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred ---ccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 011112233444444443322 37899999995 79999999999999999999864
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0088 Score=63.27 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc---CC---
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM---GS--- 320 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~---g~--- 320 (505)
+..+.++.+ +.|+.++.+-+...+..+..+.++.+++.. .+||+.+.. .+......+..+|||+|-+-. +.
T Consensus 71 d~~~~a~~y-~~gA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l 148 (454)
T PRK09427 71 DPAEIARVY-KHYASAISVLTDEKYFQGSFDFLPIVRAIV-TQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQY 148 (454)
T ss_pred CHHHHHHHH-HcCCeEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHH
Confidence 456777777 888999988665554555677778888876 688888865 477777777778888875421 00
Q ss_pred ------------------------------cc--e-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 321 ------------------------------GS--I-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 321 ------------------------------g~--~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
|. + -..|++..+-+. +.....+....+ .++.+|+.+||.++.|+.
T Consensus 149 ~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd-~~~~~~l~~~ip-~~~~~vseSGI~t~~d~~ 226 (454)
T PRK09427 149 RQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSID-LNRTRELAPLIP-ADVIVISESGIYTHAQVR 226 (454)
T ss_pred HHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceEC-HHHHHHHHhhCC-CCcEEEEeCCCCCHHHHH
Confidence 00 0 011222211111 122223333333 257889999999999998
Q ss_pred HHHHhCCCEEEecccccC
Q 010640 368 KALVLGASTVMMGSFLAG 385 (505)
Q Consensus 368 kal~lGA~~V~~G~~f~~ 385 (505)
++. .|||+|.+|+.|+.
T Consensus 227 ~~~-~~~davLiG~~lm~ 243 (454)
T PRK09427 227 ELS-PFANGFLIGSSLMA 243 (454)
T ss_pred HHH-hcCCEEEECHHHcC
Confidence 865 58999999999864
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0054 Score=59.74 Aligned_cols=126 Identities=14% Similarity=0.113 Sum_probs=81.4
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeeccc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQE 328 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~~ 328 (505)
...++.+.++|++.+.+..- +.+...+.++.+++.-...-+.+....+.+..+.+.+...+++.+ +..++....
T Consensus 94 ~~fi~~~~~aG~~giiipDl--~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~--- 168 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDL--PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGAR--- 168 (242)
T ss_pred HHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCc---
Confidence 46788899999998887322 123455667777776212223345556777788888766776654 432221111
Q ss_pred ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 329 VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.++.......+..+++ ..++||+.+|||.++.++.++..+ ||++.+||.|..
T Consensus 169 -~~~~~~~~~~i~~lr~---~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 169 -TELPDDLKELIKRIRK---YTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred -cCCChhHHHHHHHHHh---cCCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 1111123334444443 347999999999999999999999 999999999853
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00054 Score=47.34 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=41.7
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+.++.+++++.++++.|.+.+...+||+++ ++++|+++..++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 467889999999999999999999999998 9999999999987653
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.018 Score=55.87 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=103.0
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
+..+++..+.++.+.+.+..++-|||= |-- -.++++.... .....+.++..+. . +.++.+++
T Consensus 34 ~y~~~pp~~~A~~~~~~Ga~~lHvVDL----g~~-n~~~i~~i~~--------~~~~~v~vGGGIr----~-e~v~~~l~ 95 (253)
T TIGR02129 34 FVSDKPSSYYAKLYKDDGVKGCHVIML----GPN-NDDAAKEALH--------AYPGGLQVGGGIN----D-TNAQEWLD 95 (253)
T ss_pred EecCCCHHHHHHHHHHcCCCEEEEEEC----CCC-cHHHHHHHHH--------hCCCCEEEeCCcC----H-HHHHHHHH
Confidence 445566678888999999999999983 333 3344443321 1123445555552 4 88999999
Q ss_pred cCccEEEEeCCC-CCchhHHHHHHHHHHhC-CCceEEE---c-------cc----------CC-H-HHHHHHHHcCCCEE
Q 010640 259 AGVNVVVLDSSQ-GNSSFQIEMIKYAKKTY-PELDVIG---G-------NV----------VT-M-YQAQNLIEAGVDGL 314 (505)
Q Consensus 259 aGad~I~i~~~~-g~~~~~~~~i~~l~~~~-~~~~Vi~---g-------~V----------~t-~-e~a~~l~~aGad~I 314 (505)
+|++.+.+.+.. ..+....+.++.+.+.| ++..++. + .| .+ . +.++.+.+. +..|
T Consensus 96 aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~i 174 (253)
T TIGR02129 96 EGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEF 174 (253)
T ss_pred cCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEE
Confidence 999999985421 11111134566666666 2221110 1 11 02 2 344555555 7766
Q ss_pred EEccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh--CCCEEEecccc
Q 010640 315 RVGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL--GASTVMMGSFL 383 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l--GA~~V~~G~~f 383 (505)
.+- .-...|. ..|.++.+..+++ ..++|||++||+.+..|+.++-.+ |...+.+|.++
T Consensus 175 l~T--------dI~rDGtl~G~dlel~~~l~~---~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Al 235 (253)
T TIGR02129 175 LIH--------AADVEGLCKGIDEELVSKLGE---WSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSAL 235 (253)
T ss_pred EEe--------eecccCccccCCHHHHHHHHh---hCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehH
Confidence 442 1111111 1255666655544 467999999999999999998665 55557778765
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0019 Score=56.76 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=44.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+||..|+++...
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~ 50 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLF 50 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHh
Confidence 5788999999999999999999999999998 99999999999998764
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=65.33 Aligned_cols=77 Identities=22% Similarity=0.216 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.++.+.+.|++.+.+. .-+. ..+ +.+.+..+..+ ++..++||+++|||++..|+.+++.+||+.|+
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~-------~~~-~~~n~~~i~~i---~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vi 101 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITAS-------SEG-RTTMIDVVERT---AETVFIPLTVGGGIKSIEDVDKLLRAGADKVS 101 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCcc-------ccc-ChhhHHHHHHH---HHhcCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 356777888999988763 1110 011 11334444444 34457999999999999999999999999999
Q ss_pred ecccccCCC
Q 010640 379 MGSFLAGST 387 (505)
Q Consensus 379 ~G~~f~~~~ 387 (505)
+|+.++...
T Consensus 102 vgt~~~~~p 110 (254)
T TIGR00735 102 INTAAVKNP 110 (254)
T ss_pred EChhHhhCh
Confidence 999886543
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0027 Score=60.68 Aligned_cols=34 Identities=29% Similarity=0.563 Sum_probs=30.5
Q ss_pred cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 350 SGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 350 ~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.++|+|..|||++++.+.+++.+|||.|.+|+.|
T Consensus 181 ~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~i 214 (230)
T PF01884_consen 181 SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAI 214 (230)
T ss_dssp SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHH
T ss_pred CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEE
Confidence 4699999999999999999999999999999988
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00066 Score=57.88 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+++.+.+||+|+ |+++|++|..|++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHH
Confidence 6788999999999999999999999999998 9999999999999754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0051 Score=64.13 Aligned_cols=138 Identities=12% Similarity=0.135 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCCCceEEEc-cc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYPELDVIGG-NV----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~~~~Vi~g-~V----- 297 (505)
++.+.++.+.++|.|.|+||.++|+ .+-.++.++.+|+.+..-.|.+. +.
T Consensus 166 ~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~ 245 (391)
T PLN02411 166 HYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHL 245 (391)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccccc
Confidence 3666677888999999999975531 13457888888888732234331 10
Q ss_pred -----CC----HHHHHHHHHc------CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC
Q 010640 298 -----VT----MYQAQNLIEA------GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362 (505)
Q Consensus 298 -----~t----~e~a~~l~~a------Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~ 362 (505)
.+ .+.+..+..+ |+|+|.++.|.-...........+ +.........+..+..++|||+.||+ +
T Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~-~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 246 DATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHG-SEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccC-CccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 01 1234444442 599999975321000000000001 00000111122333457899999999 6
Q ss_pred HHHHHHHHHhC-CCEEEecccccCCC
Q 010640 363 SGHIVKALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 363 ~~di~kal~lG-A~~V~~G~~f~~~~ 387 (505)
+.+..++++.| ||+|.+|++|+.-.
T Consensus 324 ~~~a~~~l~~g~aDlV~~gR~~iadP 349 (391)
T PLN02411 324 RELGMQAVQQGDADLVSYGRLFISNP 349 (391)
T ss_pred HHHHHHHHHcCCCCEEEECHHHHhCc
Confidence 78899999999 99999999998643
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0093 Score=56.25 Aligned_cols=41 Identities=27% Similarity=0.536 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 337 ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 337 ~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
...+..+++ ..++|++..|||++++++.+++..|||.|.+|
T Consensus 165 ~e~i~~Vk~---~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 165 PETISLVKK---ASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHH---hhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 334444444 34699999999999999999999999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0036 Score=59.23 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=83.7
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-cCCHH--HHHHHHHcCCCE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-VVTMY--QAQNLIEAGVDG 313 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V~t~e--~a~~l~~aGad~ 313 (505)
+.++.+..+.++..+.++.+ +.|++++.+.++. ....-.+.++.+++.+++..+++.. +.++. .++.+.++|+|+
T Consensus 2 l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~ 79 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKV-ADYVDIIEIGTPL-IKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADI 79 (206)
T ss_pred eEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHH-HHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCE
Confidence 34555554555667777777 7899999884322 1112257788888887666676643 33433 688899999999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-CCCCCH-HHHHHHHHhCCCEEEecccc
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-GGISNS-GHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-GGI~~~-~di~kal~lGA~~V~~G~~f 383 (505)
|.+-.. . + ...+.++.+.+++.+++++++ -+..+. .++..+..+|+|.|.+.+.|
T Consensus 80 i~vh~~------~--------~-~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 80 VTVLGV------A--------D-DATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred EEEecc------C--------C-HHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence 965310 0 1 122345556677788999884 244443 67778888999999775433
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0039 Score=61.89 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 276 QIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 276 ~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
+.+.++.+|+..+ ..+|.+ ++.|.+++..+.++|+|+|.+++ ++ ++.+.++....+ ..++
T Consensus 182 i~~av~~~r~~~~~~~~I~V-Ev~tleea~eA~~~GaD~I~LDn-------------~~---~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV-ETETLEQVQEALEYGADIIMLDN-------------MP---VDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE-ECCCHHHHHHHHHcCCCEEEECC-------------CC---HHHHHHHHHHHHhcCCCe
Confidence 5677888888875 344444 88999999999999999997752 12 233444443332 2358
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|+.++||| |...+.+..+.|+|.+.+|++..
T Consensus 245 ~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 245 KIEASGNI-TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence 99999999 79999999999999999999764
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.011 Score=58.18 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC-CHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV-TMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~-t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+..+.++...+.|++++.+.+...+..+..+.++.+++.. ++||+.+... +...+..+..+|||++-+..
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~------- 141 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-SLPVLRKDFIIDPYQIYEARAAGADAILLIV------- 141 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-CCCEEeeeecCCHHHHHHHHHcCCCEEEEEe-------
Confidence 34678888899999999988665444444578888888876 8999987653 66688999999999996641
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
.. .+ ...+.++.+.++..+..+++ =+.+..++.+|..+||+.+++..
T Consensus 142 -~~-----l~-~~~l~~li~~a~~lGl~~lv--evh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 142 -AA-----LD-DEQLKELLDYAHSLGLDVLV--EVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred -cc-----CC-HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHcCCCEEEECC
Confidence 11 11 24556666777778888888 78899999999999999998764
|
|
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=68.83 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=55.5
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
.+.+++++|+++.++++++.++++.++++.+.+++..++||.++ ++++|+|+.+|++...
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~ 250 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHL 250 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHh
Confidence 46789999999989999999999999999999999999999976 7999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.023 Score=55.39 Aligned_cols=207 Identities=17% Similarity=0.191 Sum_probs=111.8
Q ss_pred CeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-Ceee-eEEeechhhhhhc
Q 010640 145 SRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERL-DVVTREDVERLKG 222 (505)
Q Consensus 145 g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~-GiIt~~dil~~~~ 222 (505)
.-++|+|+..-|--.+..+..+.++... ..+=++.+.+.+++.+.|-|. +... --+....+ .++.
T Consensus 3 KpiIGmvHL~pLPGsp~~~~~~~~iie~------------A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etv-aaM~ 69 (254)
T PF03437_consen 3 KPIIGMVHLPPLPGSPRYDGSMEEIIER------------AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETV-AAMA 69 (254)
T ss_pred CCEEEEEcCCCCCcCCCCCCCHHHHHHH------------HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHH-HHHH
Confidence 4578999887663111111122222221 223356789999999999876 4321 11222211 1110
Q ss_pred CCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeC-------CCCCchhHHHHHHHHHHhC-CCceEEE
Q 010640 223 YPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDS-------SQGNSSFQIEMIKYAKKTY-PELDVIG 294 (505)
Q Consensus 223 ~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~-------~~g~~~~~~~~i~~l~~~~-~~~~Vi~ 294 (505)
.... .....-.+++|.++-. .+..+.+..+...|++++=+.. .+|.-......+-+.|+.. .++.++.
T Consensus 70 ~i~~---~v~~~~~~p~GVnvL~-nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ila 145 (254)
T PF03437_consen 70 RIAR---EVRREVSVPVGVNVLR-NDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILA 145 (254)
T ss_pred HHHH---HHHHhCCCCEEeeeec-CCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEe
Confidence 0000 0011224678877742 2345566667778999986532 2333333333333445544 2344444
Q ss_pred cccC----------CH-HHHHHH-HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC
Q 010640 295 GNVV----------TM-YQAQNL-IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362 (505)
Q Consensus 295 g~V~----------t~-e~a~~l-~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~ 362 (505)
.|. +. +.++.+ ...++|+++|+.... + . -+.++-+..+++. ..+||+..+| .|
T Consensus 146 -DV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T----G-----~-~~~~~~l~~vr~~---~~~PVlvGSG-vt 210 (254)
T PF03437_consen 146 -DVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT----G-----E-PPDPEKLKRVREA---VPVPVLVGSG-VT 210 (254)
T ss_pred -eechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc----C-----C-CCCHHHHHHHHhc---CCCCEEEecC-CC
Confidence 221 22 344444 578999999973211 1 0 1345555555554 3489999767 57
Q ss_pred HHHHHHHHHhCCCEEEeccccc
Q 010640 363 SGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 363 ~~di~kal~lGA~~V~~G~~f~ 384 (505)
+..+.+.|.. ||++.+||.|.
T Consensus 211 ~~Ni~~~l~~-ADG~IVGS~~K 231 (254)
T PF03437_consen 211 PENIAEYLSY-ADGAIVGSYFK 231 (254)
T ss_pred HHHHHHHHHh-CCEEEEeeeee
Confidence 8899999987 99999999884
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0059 Score=60.03 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=74.4
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEEccc--------CC---HHH-HHHHHHcCCCEE
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIGGNV--------VT---MYQ-AQNLIEAGVDGL 314 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~g~V--------~t---~e~-a~~l~~aGad~I 314 (505)
..++.+++.|++.+.+....+.. ....+.++.+++.. .++|+++-.. .+ ... ++.+.++|+|+|
T Consensus 94 ~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyi 173 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIV 173 (258)
T ss_pred eeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEE
Confidence 45778889999988775543322 23445566665543 1567665110 12 223 466778999999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC--C----HHHHHHHHHhCCCEEEecccccC
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS--N----SGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~--~----~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+.. +.+..+..+ ++..++||++.|||. + ...+..++.+||+++.+|+.+..
T Consensus 174 kt~~~---------------~~~~~l~~~---~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 174 KTPYT---------------GDIDSFRDV---VKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred eccCC---------------CCHHHHHHH---HHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 76410 123444433 333569999999999 5 44556666999999999998764
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0014 Score=63.78 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=54.5
Q ss_pred CHHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 299 TMYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
..+-++.+.++|++.+.+- .... ..+ ..+.+..+..+ ++..++||+++|||++..|+.+++..||++|
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~-------~~~-~~~~~~~i~~i---~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v 97 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITAS-------SEG-RETMLDVVERV---AEEVFIPLTVGGGIRSLEDARRLLRAGADKV 97 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcc-------ccc-CcccHHHHHHH---HHhCCCCEEEeCCCCCHHHHHHHHHcCCceE
Confidence 3466788889999977653 2111 001 11334444444 3445799999999999999999999999999
Q ss_pred EecccccCC
Q 010640 378 MMGSFLAGS 386 (505)
Q Consensus 378 ~~G~~f~~~ 386 (505)
++|+.++..
T Consensus 98 ~ig~~~~~~ 106 (243)
T cd04731 98 SINSAAVEN 106 (243)
T ss_pred EECchhhhC
Confidence 999988654
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.011 Score=55.86 Aligned_cols=125 Identities=18% Similarity=0.195 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-cc-CCHHHHHHHHHcCCCEEEEc-cCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NV-VTMYQAQNLIEAGVDGLRVG-MGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V-~t~e~a~~l~~aGad~I~v~-~g~g~~~~~ 326 (505)
.+.++.+.+.|+|.+.++.... ....+.++.+++. +..++.. .. ...+..+.. ..++|++.+. ..+|. +
T Consensus 70 ~~~~~~~~~~g~dgv~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~-~~~~d~i~~~~~~~g~---t 141 (211)
T cd00429 70 ERYIEAFAKAGADIITFHAEAT--DHLHRTIQLIKEL--GMKAGVALNPGTPVEVLEPY-LDEVDLVLVMSVNPGF---G 141 (211)
T ss_pred HHHHHHHHHcCCCEEEECccch--hhHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHH-HhhCCEEEEEEECCCC---C
Confidence 4567778899999998866432 2345556656554 4544442 11 233444444 3448988664 21111 0
Q ss_pred ccccccCcChHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAA--QSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~--~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.. .+.......+.++++... ..++|++++|||.. .++.+++..||+++.+|+.|..
T Consensus 142 g~--~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 142 GQ--KFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred Cc--ccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 00 111112223333333321 11389999999996 9999999999999999999864
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.09 E-value=0.075 Score=49.01 Aligned_cols=73 Identities=25% Similarity=0.346 Sum_probs=52.6
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEEeCCC------CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQ------GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG 310 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~------g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG 310 (505)
.+.+++. ..+....+.++|+|++..+.+. + ....+++++.+.+. ++|||+ |.+.+++.+.++.++|
T Consensus 94 l~MADis----t~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~G 166 (192)
T PF04131_consen 94 LVMADIS----TLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELG 166 (192)
T ss_dssp EEEEE-S----SHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT
T ss_pred EEeeecC----CHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcC
Confidence 4455664 4467777889999999875422 2 45678899999886 799877 9999999999999999
Q ss_pred CCEEEEc
Q 010640 311 VDGLRVG 317 (505)
Q Consensus 311 ad~I~v~ 317 (505)
+++++||
T Consensus 167 A~aVVVG 173 (192)
T PF04131_consen 167 AHAVVVG 173 (192)
T ss_dssp -SEEEE-
T ss_pred CeEEEEC
Confidence 9999997
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0067 Score=59.98 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=66.1
Q ss_pred HHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEe
Q 010640 277 IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIA 356 (505)
Q Consensus 277 ~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa 356 (505)
...++..|+..|..+|.+ ++.|.+++..+.++|+|+|...+ + .++.+.++.+..+ .++|+.+
T Consensus 177 ~~av~~~r~~~~~~~I~V-Ev~tleea~eA~~~gaD~I~LD~-------------~---~~e~l~~~v~~~~-~~i~leA 238 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEV-EVESLDELRQALAAGADIVMLDE-------------L---SLDDMREAVRLTA-GRAKLEA 238 (277)
T ss_pred HHHHHHHHHhCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhC-CCCcEEE
Confidence 445666777655566655 78899999999999999996541 1 2333444444332 2689999
Q ss_pred cCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 357 DGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 357 ~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+||| +...+......|+|.+.+|+...
T Consensus 239 sGGI-t~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 239 SGGI-NESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred ECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 9999 79999999999999999998653
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.002 Score=63.15 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.++.+.+.|++.+.+- .. +...+. ...+..+..++ +..++||+++|||++..|+.+++..||+.|+
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~-------~~~~~~-~~~~~~i~~i~---~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Vi 101 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDIT-------ASSEGR-DTMLDVVERVA---EQVFIPLTVGGGIRSVEDARRLLRAGADKVS 101 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCC-------cccccC-cchHHHHHHHH---HhCCCCEEeeCCCCCHHHHHHHHHcCCCEEE
Confidence 456777788999988763 11 100111 13344554444 4457999999999999999999999999999
Q ss_pred ecccccCCC
Q 010640 379 MGSFLAGST 387 (505)
Q Consensus 379 ~G~~f~~~~ 387 (505)
+|+.++...
T Consensus 102 igt~~l~~p 110 (253)
T PRK02083 102 INSAAVANP 110 (253)
T ss_pred EChhHhhCc
Confidence 999876543
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0065 Score=60.01 Aligned_cols=92 Identities=20% Similarity=0.157 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh----c
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ----S 350 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~----~ 350 (505)
.+.+.++.+|+..|..+|.+ ++.+.+++..+.++|+|.|.+.+ .+++.+.++.+..+. .
T Consensus 168 ~i~~av~~~r~~~~~~kIeV-Ev~~leea~~a~~agaDiI~LDn----------------~~~e~l~~~v~~l~~~~~~~ 230 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVVEV-EVESLEDALKAAKAGADIIMLDN----------------MTPEEIREVIEALKREGLRE 230 (278)
T ss_pred HHHHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCcCEEEECC----------------CCHHHHHHHHHHHHhcCcCC
Confidence 35677777887766667766 89999999999999999996653 124455555554432 2
Q ss_pred CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 351 GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 351 ~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++.+.++||| |...+.+....|+|.+.+|++..
T Consensus 231 ~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 231 RVKIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred CEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 4789999999 99999999999999999998764
|
|
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0028 Score=64.51 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=50.6
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++.++|++..+++++++++++.++++.|.+.+...+||+|+ |+++|+||..|+.+..
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~ 260 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVF 260 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHH
Confidence 468899985347899999999999999999999888888887 9999999999998654
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0066 Score=57.50 Aligned_cols=119 Identities=23% Similarity=0.247 Sum_probs=76.3
Q ss_pred HHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 252 RLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 252 ~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
+++.+.+.++|.+++ .+... .+...++.++.--++.-++.+.+++..+.+.|+|+|-+| .+..|....+
T Consensus 73 ~~dlA~~~~AdGVHl--Gq~D~-----~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~G----pifpT~tK~~ 141 (211)
T COG0352 73 RVDLALAVGADGVHL--GQDDM-----PLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLG----PIFPTSTKPD 141 (211)
T ss_pred cHHHHHhCCCCEEEc--CCccc-----chHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEEC----CcCCCCCCCC
Confidence 345566788888877 32211 122334444332233336679999999999999999664 3344433333
Q ss_pred cCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...-.+..+..+.+ ...+|+++-||| +...+...+..||++|.+-+.+..
T Consensus 142 ~~~~G~~~l~~~~~---~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 142 APPLGLEGLREIRE---LVNIPVVAIGGI-NLENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred CCccCHHHHHHHHH---hCCCCEEEEcCC-CHHHHHHHHHhCCCeEEehhHhhc
Confidence 31122333333333 234999999996 788999999999999999988764
|
|
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0012 Score=55.56 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++++++.++++.++++.|.+.+...+||+|+ |+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~ 49 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL 49 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence 6788999999999999999999999999998 9999999999998765
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.003 Score=52.21 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=58.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERL 253 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~ 253 (505)
++++++++.++.++++.|.+.+...+||+|+ |+++|++|..|++........ +.-..... .+.......+.+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~ 74 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASGGCCG-----DHAEPFKV--TVSVDDDLRIVL 74 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcccchh-----hhcccCCE--EECCCCCHHHHH
Confidence 5678899999999999999999999999998 999999999999875432111 10011111 122223355666
Q ss_pred HHHHHcCccEEEE
Q 010640 254 EHLVKAGVNVVVL 266 (505)
Q Consensus 254 ~~lieaGad~I~i 266 (505)
+.+.+.+...+.+
T Consensus 75 ~~~~~~~~~~~~V 87 (106)
T cd04582 75 SRMFAHDMSWLPC 87 (106)
T ss_pred HHHHHCCCCeeeE
Confidence 7777777775544
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0031 Score=63.98 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=52.0
Q ss_pred ccccccccccCCC--ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSS--NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~--~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..+|.++|++ + ++++++++++.++++.|.+.+...+||+|+ |+++|+||..|+.+..
T Consensus 196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~ 255 (321)
T PRK11543 196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL 255 (321)
T ss_pred HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHH
Confidence 4578999998 6 999999999999999999999999999998 9999999999988654
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0059 Score=56.58 Aligned_cols=114 Identities=25% Similarity=0.246 Sum_probs=67.9
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
.+.+.+.+++.+++....-. .. ..++.+ ++..+ ..++-+.++++.+.+.|+|++.+|- +..+....+
T Consensus 65 ~~la~~~~~dGvHl~~~~~~---~~----~~r~~~~~~~~i-g~S~h~~~e~~~a~~~g~dYv~~gp----vf~T~sk~~ 132 (180)
T PF02581_consen 65 VDLALELGADGVHLGQSDLP---PA----EARKLLGPDKII-GASCHSLEEAREAEELGADYVFLGP----VFPTSSKPG 132 (180)
T ss_dssp HHHHHHCT-SEEEEBTTSSS---HH----HHHHHHTTTSEE-EEEESSHHHHHHHHHCTTSEEEEET----SS--SSSSS
T ss_pred HHHHHhcCCCEEEecccccc---hH----HhhhhcccceEE-EeecCcHHHHHHhhhcCCCEEEECC----ccCCCCCcc
Confidence 44566788999888443221 11 223322 23333 3478899999999999999998862 111211111
Q ss_pred cCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 332 VGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
...-.+..+ .+.++...+||++-||| ++.++.++..+||++|.+-+.
T Consensus 133 ~~~~g~~~l---~~~~~~~~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~a 179 (180)
T PF02581_consen 133 APPLGLDGL---REIARASPIPVYALGGI-TPENIPELREAGADGVAVISA 179 (180)
T ss_dssp -TTCHHHHH---HHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEEESHH
T ss_pred ccccCHHHH---HHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEEEee
Confidence 111122333 34444566999999999 899999999999999987653
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.016 Score=55.40 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-c-CCHHHHHHHHHcCCCEEEEc-cCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-V-VTMYQAQNLIEAGVDGLRVG-MGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V-~t~e~a~~l~~aGad~I~v~-~g~g~~~~ 325 (505)
..+.++.+.+.|++.+.++.... ......++.+++. +..++... . ...+..+. ...++|++.+. ..+|....
T Consensus 73 ~~~~i~~~~~~g~d~v~vh~~~~--~~~~~~~~~~~~~--~~~~g~~~~~~t~~e~~~~-~~~~~d~i~~~~~~~g~tg~ 147 (220)
T PRK05581 73 PDRYVPDFAKAGADIITFHVEAS--EHIHRLLQLIKSA--GIKAGLVLNPATPLEPLED-VLDLLDLVLLMSVNPGFGGQ 147 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeeccc--hhHHHHHHHHHHc--CCEEEEEECCCCCHHHHHH-HHhhCCEEEEEEECCCCCcc
Confidence 44566777789999998876432 2345556666655 55544421 1 23444443 34468877664 21211110
Q ss_pred cccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+....+.-+.++++.....+ .+|..+|||.. .++.+++..|||+|.+||.+..
T Consensus 148 -----~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 148 -----KFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred -----cccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence 111112233333333332222 34668899988 7999999999999999999864
|
|
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00028 Score=75.08 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=76.1
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
++|.+++ +++++++++.++.+.|.+ ++ +||+|+ +|+++|+||.+|+..... +....++|+. ..++..++
T Consensus 199 ~im~~~~--~~v~~~~~~~eal~~m~~~~~~~lpVVD~---~g~lvGiIt~~Dil~~l~-~~~~ed~~~~--~gv~~~~~ 270 (449)
T TIGR00400 199 SIMRSSV--FSIVGVNDQEEVARLIQKYDFLAVPVVDN---EGRLVGIVTVDDIIDVIQ-SEATEDFYMI--AAVKPLDD 270 (449)
T ss_pred HHhCCCC--eeECCCCCHHHHHHHHHHcCCCEEeEEcC---CCeEEEEEEHHHHHHHHH-hhhHHHHHHh--cCCCCCcc
Confidence 3566666 889999999999999998 65 999998 899999999999963211 1223677775 55544456
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
+.+.+++..+.++++.+|+|. .+.|++| ..++.
T Consensus 271 ~~l~~~~~~~~~~R~~wL~v~---~~~~~~t-~~ii~ 303 (449)
T TIGR00400 271 SYFDTSILVMAKNRIIWLLVL---LVSSTFT-ATIIS 303 (449)
T ss_pred hhhhchHHHHHHhccchHHHH---HHHHHHH-HHHHH
Confidence 778999999999999999885 4455555 44443
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.006 Score=60.22 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=66.9
Q ss_pred HHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 277 IEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 277 ~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
...++.+|+.++ ..+|.+ ++.+.+++..+.++|+|+|.++. . .++.+.++.+..+. ++|+.
T Consensus 169 ~~~v~~~r~~~~~~~~Igv-ev~s~eea~~A~~~gaDyI~ld~-------------~---~~e~l~~~~~~~~~-~ipi~ 230 (268)
T cd01572 169 TEAVRRARAAAPFTLKIEV-EVETLEQLKEALEAGADIIMLDN-------------M---SPEELREAVALLKG-RVLLE 230 (268)
T ss_pred HHHHHHHHHhCCCCCeEEE-EECCHHHHHHHHHcCCCEEEECC-------------c---CHHHHHHHHHHcCC-CCcEE
Confidence 456677788775 344444 88999999999999999997652 0 13444444443322 58999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++||| |...+......|+|++.+|++..
T Consensus 231 AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 231 ASGGI-TLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEEeeec
Confidence 99999 79999999999999999998753
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0045 Score=51.99 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=42.1
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKND-VDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~-i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+++ ...+||+|+ |+++|+|+..|++...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP 50 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH
Confidence 6778899999999999997765 889999998 9999999999998765
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0039 Score=61.47 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=51.4
Q ss_pred cccccccccCCC-ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 164 VKIFDYMRDCSS-NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 164 ~~v~~im~~~~~-~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++.++|.+ + ++++.+++++.++++.|.+.+.+.+||+|+ |+++|+||..|+.+..
T Consensus 155 ~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 155 VKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHH
Confidence 468899988 7 899999999999999999999999999998 9999999999998764
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0076 Score=59.37 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 276 QIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 276 ~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
....++.+|+.++ ..+|.+ ++.|.++++.+.++|+|+|.+++ ..++.+.++.+..+. .+|+
T Consensus 164 ~~~av~~~r~~~~~~~~Igv-ev~t~eea~~A~~~gaDyI~ld~----------------~~~e~lk~~v~~~~~-~ipi 225 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEV-EVESLEEAEEAAEAGADIIMLDN----------------MKPEEIKEAVQLLKG-RVLL 225 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhcC-CCcE
Confidence 4456777788775 345544 88999999999999999996642 112344444443322 3899
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.++||| +...+......|||++.+|....
T Consensus 226 ~AsGGI-~~~ni~~~a~~Gvd~Isvgait~ 254 (265)
T TIGR00078 226 EASGGI-TLDNLEEYAETGVDVISSGALTH 254 (265)
T ss_pred EEECCC-CHHHHHHHHHcCCCEEEeCHHHc
Confidence 999999 79999999999999999987653
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0021 Score=62.01 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.++.+.+.|++.+.+.--.|. ..+. .+.+..+.++++ ..++||+++|||++..|+.+++.+||+.|.+
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~------~~g~-~~~~~~i~~i~~---~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vil 102 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGA------KAGK-PVNLELIEAIVK---AVDIPVQVGGGIRSLETVEALLDAGVSRVII 102 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcc------ccCC-cccHHHHHHHHH---HCCCCEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 45577788899998877411110 1111 134455544444 4579999999999999999999999999999
Q ss_pred cccccCCC
Q 010640 380 GSFLAGST 387 (505)
Q Consensus 380 G~~f~~~~ 387 (505)
|+.++...
T Consensus 103 g~~~l~~~ 110 (233)
T PRK00748 103 GTAAVKNP 110 (233)
T ss_pred CchHHhCH
Confidence 99887543
|
|
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0021 Score=64.30 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=54.3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
.+..++++|+++.++++++.+.++.++++.+.+++..++||+++ ++++|+|+.+|++...
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence 35678999998778999999999999999999999999999986 6899999999998654
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.005 Score=51.65 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=42.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.+++++.++.++.+.|.+.+...+||+|+ |+++|+||..|+.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI 48 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence 5678899999999999999999999999998 999999999999874
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.01 Score=49.05 Aligned_cols=47 Identities=17% Similarity=0.322 Sum_probs=43.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.++.++.++++.|.+.+...+||+|+ ++++|+++..|++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAY 50 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHh
Confidence 6778899999999999999999999999998 9999999999998754
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0086 Score=50.43 Aligned_cols=47 Identities=26% Similarity=0.358 Sum_probs=42.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.+.++.+++++.++++.|.+.+...+||+|+ |+++|+||..|+.+..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~ 49 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQM 49 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHH
Confidence 3567899999999999999999999999998 9999999999998754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.045 Score=51.71 Aligned_cols=118 Identities=24% Similarity=0.228 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHH--HHHHHcCCCEEEEccCCccee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQA--QNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a--~~l~~aGad~I~v~~g~g~~~ 324 (505)
..+..+.+.+.++|.+.++... ..+.++.+++.+ +.+++ + .+.+.... ......|+|++.........
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e-----~~~~~~~l~~~~-~~~~i~~i-~~~~~~~~~~~~~~~~~aD~il~dt~~~~~- 133 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDE-----SPEYCAQLRARL-GLPVIKAI-RVKDEEDLEKAAAYAGEVDAILLDSKSGGG- 133 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHhhc-CCcEEEEE-ecCChhhHHHhhhccccCCEEEEcCCCCCC-
Confidence 4455566677899999986542 134566677654 34444 3 23333332 24455799999774211100
Q ss_pred ecccccccCcC-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccccc
Q 010640 325 TTQEVCAVGRG-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~ 384 (505)
..|.|.+ ..+.+. +.. ..+|++++||| |+..+..++..| +++|-++|.+.
T Consensus 134 ----~Gg~g~~~~~~~l~---~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie 185 (203)
T cd00405 134 ----GGGTGKTFDWSLLR---GLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVE 185 (203)
T ss_pred ----CCCCcceEChHHhh---ccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCccc
Confidence 0011111 112222 221 35899999999 999999999999 99999999874
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0047 Score=52.62 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.++.++.++.+.|.+.+.+.+||+|+ |+++|+|+..|+++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 51 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHAR 51 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhc
Confidence 7788999999999999999999999999998 99999999999987543
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0023 Score=55.24 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.+++++.++.++++.|.++++..+||+|+ ++++|+||.+|++...
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~ 50 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSL 50 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 7889999999999999999999999999998 9999999999998754
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0024 Score=54.27 Aligned_cols=48 Identities=23% Similarity=0.226 Sum_probs=44.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.++++..+||+|+ ++++|+||..|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHH
Confidence 6788999999999999999999999999998 99999999999988754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0076 Score=50.66 Aligned_cols=48 Identities=17% Similarity=0.156 Sum_probs=43.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++.+.|.+.+...+||+|+ |+++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHh
Confidence 5678899999999999999999999999998 99999999999987653
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0035 Score=68.96 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=52.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..+++++|++ +..++++++++.++.+.|.+++.+.+||+|+ ++++|+||.+|+.+..
T Consensus 446 ~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l 503 (574)
T PRK01862 446 TTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDL 503 (574)
T ss_pred hCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHh
Confidence 4578999998 8899999999999999999999999999999 9999999999998753
|
|
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0021 Score=56.33 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=44.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+||..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~ 50 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEF 50 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhh
Confidence 5778899999999999999999999999999 99999999999998653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.014 Score=54.89 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=85.9
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCH--HHHHHHHHcCCCEE
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTM--YQAQNLIEAGVDGL 314 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~--e~a~~l~~aGad~I 314 (505)
.++.+.-+.++..+.++.+.+. ++++.+..+.- ...-.+.++.+++.+++.++++. .+.+. ..++.+.++|+|++
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~-~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i 81 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDG-VDIIEAGTPLI-KSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIV 81 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHH-HHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEE
Confidence 3444444455677778888887 99998843210 01115778888887767888663 34444 35788999999999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-CCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-GGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.+-. .+....+.++.+.+++.+++++.+ =+..|+.++.+++..|++.|.++..
T Consensus 82 ~~h~---------------~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~ 135 (202)
T cd04726 82 TVLG---------------AAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRG 135 (202)
T ss_pred EEEe---------------eCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCc
Confidence 6521 111123344556666778888765 6899999999999999999988643
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0035 Score=60.52 Aligned_cols=78 Identities=26% Similarity=0.294 Sum_probs=54.4
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.|+.+.+.|+|.+.+.--.+ ...+.+ .....+..+ ++..++|+++.|||++.+++.+++..|||.|+
T Consensus 31 p~~~a~~~~~~g~d~l~v~dl~~------~~~~~~-~~~~~i~~i---~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 31 PVEVAKKWEEAGAKWLHVVDLDG------AKGGEP-VNLELIEEI---VKAVGIPVQVGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred HHHHHHHHHHcCCCEEEEECCCc------cccCCC-CCHHHHHHH---HHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 34677888889999998741100 011111 123334333 33457999999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+|+..+..
T Consensus 101 igs~~l~d 108 (234)
T cd04732 101 IGTAAVKN 108 (234)
T ss_pred ECchHHhC
Confidence 99987643
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0077 Score=56.56 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCccEE-EEeC-------CCCCc-hhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVV-VLDS-------SQGNS-SFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I-~i~~-------~~g~~-~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+++..+.++|+-++ .++. ..|.. ......++.+-+.. .+||+++ .+++.-+|+-|...|+|+|+-|
T Consensus 30 ~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aV-sIPVMAKvRIGH~~EA~iLealgVD~IDES 106 (296)
T COG0214 30 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMIDES 106 (296)
T ss_pred HHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhc-ccceeeeeecchhHHHHHHHHhCCCccccc
Confidence 355666666775444 3321 12211 12345666676766 7999997 5678999999999999999865
|
|
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0032 Score=52.39 Aligned_cols=47 Identities=11% Similarity=0.314 Sum_probs=43.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++.++.++.++++.|.+++...+||+|+ |+++|++|..|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHH
Confidence 6788999999999999999999999999998 9999999999998754
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=48.88 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.+++.+.++.++.+.|.+.+...+||+|+|+++|+|+..|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEGGRVVGIISRRDVEKAL 49 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeCCEEEEEEEHHHHHHHH
Confidence 67889999999999999999999999999989999999999998754
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0012 Score=56.19 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=42.1
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE 157 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~ 157 (505)
..++|..++ .++++++++.++++.|.+ ++ +||+|+ +++++|+|+.+|++
T Consensus 60 v~dim~~~~--~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~~l~Givt~~dl~ 111 (113)
T cd04597 60 VRDVINRKP--VTARPNDPLREALNLMHEHNIRTLPVVDD---DGTPAGIITLLDLA 111 (113)
T ss_pred HHHhcCCCC--CEECCcCcHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHhh
Confidence 445666677 889999999999999987 65 999997 89999999999884
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0042 Score=60.38 Aligned_cols=76 Identities=28% Similarity=0.395 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.++.+.+.|++.+.+---.+ ...+. ......+ .+.++..++|++..|||++..|+..++.+||+.|.+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~------~~~~~-~~~~~~i---~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~i 104 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDG------AFEGE-RKNAEAI---EKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVIL 104 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechh------hhcCC-cccHHHH---HHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 3566777788999885521000 00111 1233334 445556789999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
|+..+.
T Consensus 105 Gs~~~~ 110 (241)
T PRK13585 105 GTAAVE 110 (241)
T ss_pred ChHHhh
Confidence 997653
|
|
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0022 Score=55.13 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=43.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.+.++++++++.++++.|.+++...+||+|+ |+++|+|+..|+++..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL 49 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence 5778999999999999999999999999998 9999999999998865
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.014 Score=59.98 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
.+.++.+.+.+.+.+ ...-..+.++.+++. .+.+.+ +.....+.++.++++|+|+|.+.. ......
T Consensus 102 a~aa~~~~e~~~~~~-------~p~l~~~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihg--rt~~q~- 169 (369)
T TIGR01304 102 AAATRLLQELHAAPL-------KPELLGERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQG--TLVSAE- 169 (369)
T ss_pred HHHHHHHHHcCCCcc-------ChHHHHHHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEec--cchhhh-
Confidence 344555555555543 223345666777775 333332 223456788999999999998741 100000
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
-..+.+. .. .+.+.++..++|||+ |++.+..++.+++..|||+|++|+
T Consensus 170 ~~sg~~~--p~---~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 170 HVSTSGE--PL---NLKEFIGELDVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred ccCCCCC--HH---HHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 0011111 12 234444556899998 999999999999999999999774
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0052 Score=51.40 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=42.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+.+...+||+|+ ++++|++|..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~ 48 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSY 48 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHh
Confidence 4678899999999999999999999999998 999999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.07 Score=55.32 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=77.9
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHH-HHHHHHHcCCCEEEEcc--CCcceeecc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMY-QAQNLIEAGVDGLRVGM--GSGSICTTQ 327 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e-~a~~l~~aGad~I~v~~--g~g~~~~~~ 327 (505)
++.+.++|+|.+.+|...+ .......++.+++. ++.+++ =++.++. ..+.+ ..++|.+.+.. .++ +
T Consensus 243 v~~~a~aGAD~vTVH~ea~-~~ti~~ai~~akk~--GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~----~- 313 (391)
T PRK13307 243 ARMAADATADAVVISGLAP-ISTIEKAIHEAQKT--GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE----G- 313 (391)
T ss_pred HHHHHhcCCCEEEEeccCC-HHHHHHHHHHHHHc--CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC----c-
Confidence 7778899999999987544 22355566666665 555544 2444544 44444 78999997742 111 0
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..|...-+.++++. ..+++|..+|||. .+++..++.+||+.+.+|+.+..
T Consensus 314 -----~~~~~~kI~~ikk~--~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf~ 363 (391)
T PRK13307 314 -----TEHAWGNIKEIKKA--GGKILVAVAGGVR-VENVEEALKAGADILVVGRAITK 363 (391)
T ss_pred -----ccchHHHHHHHHHh--CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 01333445555443 2468999999998 78899999999999999998643
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.03 Score=52.62 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=90.9
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCC-HHHHHHHHHcCCCE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVT-MYQAQNLIEAGVDG 313 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t-~e~a~~l~~aGad~ 313 (505)
++++.+..+.++..+.++.+.+. ++++++.++.=...+ .+.++.+|+.||+.+|++ |+... .-.++.+.++|+|.
T Consensus 6 LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG-~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~ 83 (217)
T COG0269 6 LQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEG-MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADW 83 (217)
T ss_pred eEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhh-HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCE
Confidence 45655554444555556666565 888988553211122 478889999999998887 33333 34678899999999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC-CCCCHHHHHHHHH-hCCCEEEecc
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG-GISNSGHIVKALV-LGASTVMMGS 381 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G-GI~~~~di~kal~-lGA~~V~~G~ 381 (505)
+.|.. .....++..+.+.++++++.+..+= |..++.+..+=+. +|.+.+.+=+
T Consensus 84 ~tV~g---------------~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~ 138 (217)
T COG0269 84 VTVLG---------------AADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHR 138 (217)
T ss_pred EEEEe---------------cCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEe
Confidence 97751 2345667777888888888887774 9999999999998 9998876543
|
|
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.002 Score=55.14 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=40.3
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN 158 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~ 158 (505)
.|..++ .+++++.++.++++.|.+ +. +||+|+ +++++|+||.+|++.
T Consensus 73 ~~~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~vGiit~~di~~ 122 (123)
T cd04627 73 IGTSDV--ISINGDQPLIDALHLMHNEGISSVAVVDN---QGNLIGNISVTDVRL 122 (123)
T ss_pred cCcCCc--eEeCCCCCHHHHHHHHHHcCCceEEEECC---CCcEEEEEeHHHhhc
Confidence 344456 899999999999999998 65 999997 789999999999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.07 Score=51.13 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
....++.+.++|++.+.+|.... ......++.+|+.--..-+....-+..+....++. -+|.|.+ +..+|....
T Consensus 74 P~~~i~~~~~~gad~I~~H~Ea~--~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~-~vD~VlvMtV~PGf~GQ-- 148 (223)
T PRK08745 74 VDRIVPDFADAGATTISFHPEAS--RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLP-ELDLVLVMSVNPGFGGQ-- 148 (223)
T ss_pred HHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHh-hcCEEEEEEECCCCCCc--
Confidence 55678899999999999987532 23456777787772122333333355666666655 4787765 433332111
Q ss_pred cccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+ -..++.-+.++++...+.+ ..|-.||||. ...+.++..+|||.+.+|+.+-
T Consensus 149 ~f---i~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 149 AF---IPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred cc---cHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh
Confidence 11 1123445555555554433 6699999986 6788899999999999999853
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.07 Score=51.16 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCce----EEEcccCCHHHHHHHHHcCCCEEEE-ccCCcc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELD----VIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGS 322 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~----Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~ 322 (505)
+..+.++.+.++|+|.+.+|.... ......++++|+. +.+ +....-+..+....++.. +|.|-+ +..+|.
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ik~~--g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGf 153 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQT--HDLALTIEWLAKQ--KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRT 153 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc--ccHHHHHHHHHHC--CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCC
Confidence 356788999999999999987532 2345777888887 442 222333456666666654 887765 433332
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
... .+ -...+.-+.++++..++.+ ..|-.||||. ...+.++.++|||.+.+|+.+-
T Consensus 154 gGQ--~f---~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 154 GTK--AP---SDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred CCc--cc---cHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhh
Confidence 111 11 0123444555555554443 6699999986 6688899999999999998853
|
|
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.004 Score=51.90 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=43.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.++.++.++++.|.+.+...+||+|+ ++++|+++..|+++...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~ 50 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVA 50 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHh
Confidence 5678899999999999999999999999998 99999999999987653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0039 Score=52.10 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=43.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++++.++.++.+.|.+.+...+||+|+ |+++|+||..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~ 50 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVA 50 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHh
Confidence 5678899999999999999999999999998 99999999999987643
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.12 Score=50.53 Aligned_cols=162 Identities=19% Similarity=0.171 Sum_probs=94.1
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
.+..+.++.++++++.+.+-. + +..+++.|..+.+.... ....++.+
T Consensus 71 AL~~g~t~~~~lel~~~~r~~------~~~~Pivlm~Y~Npi~~~G--------------------------ie~F~~~~ 118 (265)
T COG0159 71 ALAAGVTLEDTLELVEEIRAK------GVKVPIVLMTYYNPIFNYG--------------------------IEKFLRRA 118 (265)
T ss_pred HHHCCCCHHHHHHHHHHHHhc------CCCCCEEEEEeccHHHHhh--------------------------HHHHHHHH
Confidence 345677888888888874421 1 33455666655544321 34567888
Q ss_pred HHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCc--eEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeeccccccc
Q 010640 257 VKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPEL--DVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQEVCAV 332 (505)
Q Consensus 257 ieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~--~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~~~~g~ 332 (505)
.++|+|-+.+ |.+...+. +..+..+ .+ ++ ..++....+.+..+...+..-.++.. +.-| .+|.
T Consensus 119 ~~~GvdGlivpDLP~ee~~---~~~~~~~-~~-gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~G--------vTG~ 185 (265)
T COG0159 119 KEAGVDGLLVPDLPPEESD---ELLKAAE-KH-GIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMG--------VTGA 185 (265)
T ss_pred HHcCCCEEEeCCCChHHHH---HHHHHHH-Hc-CCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeccc--------ccCC
Confidence 8999999866 44433222 2222222 32 22 22333455667777777766555544 3211 1222
Q ss_pred CcChHHHHHH-HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRGQATAVYK-VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p~~~~l~~-v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
-.+....+.+ +.+..+..++||...=||.+++++.+.... ||+|.+||+|..
T Consensus 186 ~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 186 RNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred CcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 2221111222 222223347999995599999999999999 999999999964
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.046 Score=55.50 Aligned_cols=70 Identities=24% Similarity=0.408 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCC----CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHH-cCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ----GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIE-AGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~----g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~-aGad~I~v~~ 318 (505)
..+.++.+.++|++.+.||.-. +.....++.|+.+++.++++||++ |+|.|.++++...+ .|+|++.++-
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcH
Confidence 5577888888999999998732 222356899999999996699988 78899999998776 6899999873
|
|
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=48.24 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
++.+++++.++.++++.|.+.+...+||+|+++++|+++..|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~~l~~~~~ 49 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDDGRPLGIVTERDILRLLA 49 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEeHHHHHHHHh
Confidence 567889999999999999999999999998899999999999987653
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=47.19 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++..++++.++++.|.+.+.+.+||+|+++++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~~l~~~~ 48 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDDGKLVGIVTLSDIAHAI 48 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHH
Confidence 67788999999999999999999999999889999999999999864
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0042 Score=53.45 Aligned_cols=47 Identities=21% Similarity=0.368 Sum_probs=43.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.+++++|.+.+...+||+|+ |+++|+||..|+....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHH
Confidence 5678899999999999999999999999998 9999999999998653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.026 Score=55.38 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=75.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHH---hCCCceEEEc-----ccCC-----HHHHHHHHHcCCCEEE
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKK---TYPELDVIGG-----NVVT-----MYQAQNLIEAGVDGLR 315 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~---~~~~~~Vi~g-----~V~t-----~e~a~~l~~aGad~I~ 315 (505)
..++.+++.|+|++.++...|.. ..++..+..+.+ .| ++|+++- .+.+ ...++.+.+.|+|+|+
T Consensus 98 ~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~-G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK 176 (264)
T PRK08227 98 VDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRY-GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIK 176 (264)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEe
Confidence 34677889999999998766633 233433333333 33 7888771 1122 2246888899999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH-H----HHHHHHHhCCCEEEecccccCC
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS-G----HIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~-~----di~kal~lGA~~V~~G~~f~~~ 386 (505)
+-- |. +.+.++.+. ..+||+.+||=... . .+..|+..||.+|.+|+-...+
T Consensus 177 ~~y----------------~~-~~f~~vv~a---~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 177 TYY----------------VE-EGFERITAG---CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred cCC----------------CH-HHHHHHHHc---CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 741 11 445555553 45899999998853 2 3556889999999999875443
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.018 Score=56.96 Aligned_cols=89 Identities=22% Similarity=0.286 Sum_probs=65.3
Q ss_pred HHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh-cCCcEE
Q 010640 278 EMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ-SGVPVI 355 (505)
Q Consensus 278 ~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~-~~ipvI 355 (505)
..++.+|+..+ ..++.+ ++.|.+++..+.++|+|+|.++. . .++.+.++.+..+. .++|+.
T Consensus 169 ~~v~~~r~~~~~~~~I~v-ev~t~eea~~A~~~gaD~I~ld~-------------~---~~e~l~~~v~~i~~~~~i~i~ 231 (269)
T cd01568 169 EAVKRARAAAPFEKKIEV-EVETLEEAEEALEAGADIIMLDN-------------M---SPEELKEAVKLLKGLPRVLLE 231 (269)
T ss_pred HHHHHHHHhCCCCCeEEE-ecCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhccCCCeEEE
Confidence 56677888875 455555 88999999999999999997752 0 11333333333321 258999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++||| |...+.+....|||++.+|+.+.
T Consensus 232 asGGI-t~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 232 ASGGI-TLENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEcHHHc
Confidence 99997 58899999999999999997653
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0032 Score=67.15 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=52.7
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..++.++|.+ ++.++.+++++.++++.|.+.+...+||+|+ ++++|+||.+|+++..
T Consensus 334 ~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~ 391 (454)
T TIGR01137 334 NATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSAL 391 (454)
T ss_pred cCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 4578999998 9999999999999999999999999999998 9999999999998854
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0051 Score=52.27 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++++++++.++.++.+.|.+.++..+||+|+|+++|++|..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVEDNELVGVISDRDYLKAI 48 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeCCeEEEEEEHHHHHHHH
Confidence 57789999999999999999999999999999999999999998754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0041 Score=53.52 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=41.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
++.++..++++.++++.|.+.+.+.+||+|+ |+++|+++..|+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence 5678899999999999999999999999998 99999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0035 Score=53.22 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=44.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++.+.|.+.+.+.+||+|+ |+++|+++..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~ 50 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAAL 50 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhc
Confidence 6778999999999999999999999999999 99999999999987653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0069 Score=63.94 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=82.5
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCc--cCCCCcceEE
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGT--VGPDGKWMVG 240 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~--~d~~~~l~v~ 240 (505)
+++.++++. +++++++..++.+|...|.+.+++.+.|+++ +.+.||||++|+....-..-..+.. ..--..-++.
T Consensus 149 trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p~~s 226 (610)
T COG2905 149 TRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSPVIS 226 (610)
T ss_pred HHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccCcee
Confidence 478899998 9999999999999999999999998888888 9999999999999886542110000 0000000111
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV 297 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V 297 (505)
+.......+..-.+.+.++.=+.|. ..|...++++..+-++...++..+.+..+
T Consensus 227 --vd~~~~~feAml~m~r~~I~hl~V~-e~gq~~Gilt~~dIl~l~s~~~~vl~~~i 280 (610)
T COG2905 227 --VDRGDFLFEAMLMMLRNRIKHLPVT-EDGQPLGILTLTDILRLFSQNSIVLVKRI 280 (610)
T ss_pred --ecCcchHHHHHHHHHHhCCceeeee-cCCeeeEEeeHHHHHHhhCCCceeehHHh
Confidence 1122335566666677777766552 23444455555555544433444444433
|
|
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.094 Score=51.17 Aligned_cols=173 Identities=17% Similarity=0.225 Sum_probs=94.9
Q ss_pred HHHHHHHCCCCeeEEeeC-Ceee----eEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 188 IDEVLEKNDVDFVVLEKD-GERL----DVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 188 a~~~l~~~~i~~lpVvd~-g~l~----GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
=++.+++.+++.+.|-|. +.+. +-.|..-+-.... .....-.+++|+++-. .+..+.+..+...|++
T Consensus 33 ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m~~i~~-------~v~~~~~~p~GvnvL~-nd~~aal~iA~a~ga~ 104 (257)
T TIGR00259 33 DAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAMAVIAG-------QLKSDVSIPLGINVLR-NDAVAALAIAMAVGAK 104 (257)
T ss_pred HHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHHHHHHH-------HHHHhcCCCeeeeeec-CCCHHHHHHHHHhCCC
Confidence 356788899999988765 4322 1111111111100 0011223457776632 2345566666778999
Q ss_pred EEEEeC-------CCCCchhHHHHHHHHHHhC-CCceEEEccc----------CCH-HHHHHHHHcC-CCEEEEccCCcc
Q 010640 263 VVVLDS-------SQGNSSFQIEMIKYAKKTY-PELDVIGGNV----------VTM-YQAQNLIEAG-VDGLRVGMGSGS 322 (505)
Q Consensus 263 ~I~i~~-------~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V----------~t~-e~a~~l~~aG-ad~I~v~~g~g~ 322 (505)
+|=++. .+|.-+.....+-+.|+.. .++.|.. +| .+. +.++.+...| +|+++|+..+.+
T Consensus 105 FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~a-dV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG 183 (257)
T TIGR00259 105 FIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILA-DIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTG 183 (257)
T ss_pred EEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEe-ceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC
Confidence 986532 3333222333333444443 1344443 21 133 4567766666 999999732111
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
. .+..+.+..+++.. .+.|++.+||+ ++..+.+++.. |+++.+||.|
T Consensus 184 ----~------~~d~~~l~~vr~~~--~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~ 230 (257)
T TIGR00259 184 ----T------EVDLELLKLAKETV--KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTI 230 (257)
T ss_pred ----C------CCCHHHHHHHHhcc--CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCc
Confidence 0 12233344443322 24899998885 78899999987 9999999988
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.12 Score=50.53 Aligned_cols=123 Identities=19% Similarity=0.208 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-ccCCccee
Q 010640 249 DKERLEHLVKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSIC 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~ 324 (505)
..+.++.+.++|++.+.+ |.+.. ...++...+++. ++.. ++....+.+..+.+.+..-.+|.+ +.-|
T Consensus 104 ~e~F~~~~~~aGvdGlIipDLP~e---e~~~~~~~~~~~--gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~G---- 174 (259)
T PF00290_consen 104 IERFFKEAKEAGVDGLIIPDLPPE---ESEELREAAKKH--GLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMG---- 174 (259)
T ss_dssp HHHHHHHHHHHTEEEEEETTSBGG---GHHHHHHHHHHT--T-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSS----
T ss_pred hHHHHHHHHHcCCCEEEEcCCChH---HHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCC----
Confidence 345678888999999877 33322 223333333333 3322 334556778888888877788875 4211
Q ss_pred ecccccccCcChHHHHHH-HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 325 TTQEVCAVGRGQATAVYK-VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~-v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+|........+.+ +....+..++||...=||.+++++.+.. .|||+|.+||+|..
T Consensus 175 ----vTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 175 ----VTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp ----SSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred ----CCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 11111111122222 2222333469999966999999998888 99999999999964
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0035 Score=54.59 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=44.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+.+++||+|+ ++++|+|++.|+++...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~ 51 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAE 51 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhc
Confidence 6788999999999999999999999999999 99999999999987643
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0043 Score=51.64 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=43.1
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
+++.++.+++++.++.+.|.+.+...+||+|+ |+++|+|+..|++..
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK 49 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence 47889999999999999999999999999998 999999999999753
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0043 Score=52.70 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=42.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence 5778999999999999999999999999998 999999999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.074 Score=53.78 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC---CCchh--HHHHHHHHHHhCCCceEEE-cccCCHHHHHHHH-HcCCCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ---GNSSF--QIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLI-EAGVDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~---g~~~~--~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~-~aGad~I~v~ 317 (505)
+..+.++.+.++|++.+.+|... +.+.. .++.++.+++.. ++||+. |++.|++++..+. ..|+|+|.++
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 35678888889999999997632 22211 367889999886 789877 8999999999976 5899999886
|
|
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=48.90 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=42.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+|+..|+++..
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRAL 49 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHH
Confidence 5677899999999999999999999999999 9999999999998764
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0043 Score=51.78 Aligned_cols=47 Identities=17% Similarity=0.379 Sum_probs=43.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREIL 49 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHH
Confidence 5678899999999999999999999999998 9999999999998754
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.015 Score=59.90 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCCceEEEc--ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 276 QIEMIKYAKKTYPELDVIGG--NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g--~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
..+.++.+++. .+++.++ .....+.++.+.++|+|+|.+.... .....+++.+.... +.+..++.++|
T Consensus 120 ~~~iv~~~~~~--~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt-----~~~~h~~~~~~~~~---i~~~ik~~~ip 189 (368)
T PRK08649 120 ITERIAEIRDA--GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTV-----VSAEHVSKEGEPLN---LKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHhC--eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCCcCCHHH---HHHHHHHCCCC
Confidence 45566666664 4555442 2345688899999999999874110 00111111111222 23344456899
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
||+ |+|.+..++.+++.+|||+|++|.
T Consensus 190 VIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 190 VIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999 999999999999999999999984
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.024 Score=56.06 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
+.+.++.+|+.++....|.-++.+.++++.+.+.|+|+|-+. .++ ++.+.++.+..+ ..+|+.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD-------------~~~---~e~l~~~~~~~~-~~i~i~ 236 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFD-------------NRT---PDEIREFVKLVP-SAIVTE 236 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEEC-------------CCC---HHHHHHHHHhcC-CCceEE
Confidence 567777888887533333338899999999999999999552 122 233444444332 247888
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+.||| +...+......|+|++.+|.+.
T Consensus 237 AiGGI-t~~ni~~~a~~Gvd~IAvg~l~ 263 (277)
T PRK08072 237 ASGGI-TLENLPAYGGTGVDYISLGFLT 263 (277)
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEChhh
Confidence 99999 9999999999999999999865
|
|
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0056 Score=50.69 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++.+.|.+.+.+.+||+|+++++|++|..|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~~ 48 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDDGRVVGSIDESDLLDAL 48 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeCCeeEEEEeHHHHHHHH
Confidence 56788999999999999999999999999889999999999999865
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0081 Score=58.46 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. .-+ ..+.+ +....+..+. +..++|+.++|||++.+|+.+++.+||+-|.
T Consensus 35 ~~~a~~~~~~g~~~l~ivDLd~--------~~g~~-~n~~~i~~i~---~~~~~pv~vgGGirs~edv~~~l~~Ga~kvv 102 (241)
T PRK14024 35 LDAALAWQRDGAEWIHLVDLDA--------AFGRG-SNRELLAEVV---GKLDVKVELSGGIRDDESLEAALATGCARVN 102 (241)
T ss_pred HHHHHHHHHCCCCEEEEEeccc--------cCCCC-ccHHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHCCCCEEE
Confidence 456777888999877653 211 01211 3445554444 4457999999999999999999999999999
Q ss_pred ecccccCCC
Q 010640 379 MGSFLAGST 387 (505)
Q Consensus 379 ~G~~f~~~~ 387 (505)
+|+..+...
T Consensus 103 iGs~~l~~p 111 (241)
T PRK14024 103 IGTAALENP 111 (241)
T ss_pred ECchHhCCH
Confidence 999877543
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.073 Score=50.29 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=78.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEE-ccCCcceee
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRV-GMGSGSICT 325 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~ 325 (505)
.....++...++|++.|.+|.. ........++.+|+. ++...+ =+-.|+-++..-.-.-+|.|-+ +..+|-...
T Consensus 72 ~p~~~i~~fa~agad~It~H~E--~~~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ 147 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKEL--GVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQ 147 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEec--cCcCHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCccc
Confidence 3567889999999999999886 233456777888776 444322 1344555554444445888765 433321111
Q ss_pred cccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+. -.++.-+.++++...+. ++-|-.||||. ..-+..+.++|||.+.+||.+
T Consensus 148 --~Fi---~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSal 200 (220)
T COG0036 148 --KFI---PEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSAL 200 (220)
T ss_pred --ccC---HHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEE
Confidence 110 12344455555554422 45688999974 566777888999999999965
|
|
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0071 Score=51.25 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+|+++|++|..++++..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~~~~~G~v~~~~l~~~~ 48 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEGGKLVGIVTEKDIADAL 48 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEECCEEEEEEchHHHHHhh
Confidence 67788999999999999999999999999999999999999998764
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.025 Score=46.73 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=42.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++..++++.++++.|.+.+...+||+|+ |+++|+++.++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~ 49 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE 49 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec
Confidence 6778899999999999999999999999999 999999999998754
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.028 Score=54.06 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
+..+.++.+.++|++.+++|.-.. .+...++.++.+++.++++|||. |+|.+.+++.+..+.|||++.++.
T Consensus 149 ~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 149 DELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVAR 221 (231)
T ss_pred hHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcH
Confidence 466888899999999999974322 11135889999999874588877 899999999999999999998863
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=49.21 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++++.++.++++.|.+.+...+||+|+ |+++|+++..++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~ 51 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALE 51 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHh
Confidence 6678899999999999999888999999998 99999999999987654
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0065 Score=50.68 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.+++++.++.++++.|.+.+...+||+|+ |+++|+++..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 49 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLD 49 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHH
Confidence 5678899999999999999999999999998 9999999999998754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0069 Score=50.32 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+++++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 48 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDDGRLVGIVTLADIRRVP 48 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeCCeEEEEEEHHHHHHHH
Confidence 67789999999999999999999999999889999999999998755
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.025 Score=46.65 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=41.3
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
-++++++.++.++++.|.+.+...+||+|+++++|+++..|+++..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVVDYNKFLGAVYLKDIENAT 48 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHhhhc
Confidence 3577899999999999999999999999889999999999998643
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.11 Score=49.32 Aligned_cols=125 Identities=13% Similarity=0.079 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
....++.+.++|++.+.+|.... ......++.+|+.--..-+....-+..+....++. -+|.|.+ +..+|.....
T Consensus 70 P~~~i~~~~~~gad~It~H~Ea~--~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~-~vD~VlvMsV~PGf~GQ~- 145 (210)
T PRK08005 70 PQRWLPWLAAIRPGWIFIHAESV--QNPSEILADIRAIGAKAGLALNPATPLLPYRYLAL-QLDALMIMTSEPDGRGQQ- 145 (210)
T ss_pred HHHHHHHHHHhCCCEEEEcccCc--cCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH-hcCEEEEEEecCCCccce-
Confidence 55688899999999999987532 23456777787762122333334455666665554 4787765 4333321111
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ -...+.-+.++++...+ ..|-+||||. ..-+.++..+|||.+.+|+.+-
T Consensus 146 -f---~~~~~~KI~~l~~~~~~--~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 146 -F---IAAMCEKVSQSREHFPA--AECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred -e---cHHHHHHHHHHHHhccc--CCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 1 01233344444444333 3699999986 7778899999999999998754
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.038 Score=57.58 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=72.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
.+.+++.|++.+++. ... +. ....|+.. ++..+. -.+-+.+++..+.+.|+|+|.+| .+..|.....
T Consensus 270 ~dlAl~~gAdGVHLG--QeD----L~-~~~aR~ilg~~~iIG-vStHs~eEl~~A~~~gaDYI~lG----PIFpT~TK~~ 337 (437)
T PRK12290 270 WQLAIKHQAYGVHLG--QED----LE-EANLAQLTDAGIRLG-LSTHGYYELLRIVQIQPSYIALG----HIFPTTTKQM 337 (437)
T ss_pred HHHHHHcCCCEEEcC--hHH----cc-hhhhhhhcCCCCEEE-EecCCHHHHHHHhhcCCCEEEEC----CccCCCCCCC
Confidence 444556677766652 111 11 12233433 233333 36678999999999999999775 1222221110
Q ss_pred cCcC-hHHHHHHHHHHHh------hcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGRG-QATAVYKVSSIAA------QSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~p-~~~~l~~v~~~~~------~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...| .+..+..+.+.+. ..++|++|-||| +..++..++..||++|.+=+.+..
T Consensus 338 ~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 338 PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 0011 1233444444332 136999999999 999999999999999988888764
|
|
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.007 Score=51.06 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++.++.++.++++.|.+.+...+||+|+|+++|+++..|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~i~~~~l~~~~ 48 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDRGKLVGIVTDRDLKLAS 48 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecCCeEEEEEeHHHHHHhh
Confidence 56788999999999999999999999999989999999999998865
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.005 Score=53.38 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++.+++++.++++.|.+.+...+||+|+ ++++|+++..|+++...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~ 50 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIY 50 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHh
Confidence 5778999999999999999999999999998 99999999999987653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.035 Score=46.58 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=41.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|++..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~ 52 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL 52 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhh
Confidence 5678899999999999999999999999984 799999999998753
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0058 Score=51.12 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=42.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.+++++.++.++++.|.+.+...+||+|+ ++++|+|+..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQL 49 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHh
Confidence 5678899999999999999999999999998 9999999999998754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.096 Score=50.96 Aligned_cols=124 Identities=12% Similarity=0.183 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCc-----------eEEEcccCCHHHHHHHHHcCCCEEEE-
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPEL-----------DVIGGNVVTMYQAQNLIEAGVDGLRV- 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~-----------~Vi~g~V~t~e~a~~l~~aGad~I~v- 316 (505)
....++.+.++|+|.+.+|.... ......++++|+. ++ -+....-+..+....++.. +|.|-+
T Consensus 87 P~~~i~~~~~aGad~It~H~Ea~--~~~~~~l~~Ir~~--G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~-vD~VLvM 161 (254)
T PRK14057 87 QWTAAQACVKAGAHCITLQAEGD--IHLHHTLSWLGQQ--TVPVIGGEMPVIRGISLCPATPLDVIIPILSD-VEVIQLL 161 (254)
T ss_pred HHHHHHHHHHhCCCEEEEeeccc--cCHHHHHHHHHHc--CCCcccccccceeEEEECCCCCHHHHHHHHHh-CCEEEEE
Confidence 55788899999999999988532 1345677777776 43 2333333466666666654 887765
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+..+|.... .+ -...+.-+.++++..++.+ +.|-+||||.. .-+.++.++|||.+.+|+.+
T Consensus 162 tV~PGfgGQ--~F---i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 162 AVNPGYGSK--MR---SSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred EECCCCCch--hc---cHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEEChHh
Confidence 433332111 11 1123444555555554443 66999999754 57889999999999999875
|
|
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.009 Score=49.10 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=42.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+++...+||+|+++++|+++..|+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEehHHhhcc
Confidence 5678899999999999999999999999988999999999999864
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0099 Score=49.58 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=42.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
++.++.+++++.++++.|.+++.+.+||+|+++++|+||..|++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~G~v~~~dl~~~ 47 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDGNKLVGIFTSKDIALR 47 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHH
Confidence 6778899999999999999999999999988999999999999854
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.22 Score=46.84 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=81.5
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCCHHHHHHHHH-cCCCEEEEccCCc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVTMYQAQNLIE-AGVDGLRVGMGSG 321 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t~e~a~~l~~-aGad~I~v~~g~g 321 (505)
+.+...-.++.+.++|+|++.+-.... .......++..++. +..+.+- ++.+++...+..+ +|+|.+.+
T Consensus 65 t~D~G~~e~~ma~~aGAd~~tV~g~A~-~~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~----- 136 (217)
T COG0269 65 TADAGAIEARMAFEAGADWVTVLGAAD-DATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKELGVDQVIL----- 136 (217)
T ss_pred ecchhHHHHHHHHHcCCCEEEEEecCC-HHHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHhCCCEEEE-----
Confidence 334455567788999999998854332 22344455555554 5665552 4556776655555 99999865
Q ss_pred ceeecccccccCcCh-HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 322 SICTTQEVCAVGRGQ-ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 322 ~~~~~~~~~g~g~p~-~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
+.++...-.|... ..-+..+.+... .++.|-.+||| ++.++-.....|++.|.+|+.+..+
T Consensus 137 --H~g~D~q~~G~~~~~~~l~~ik~~~~-~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt~a 198 (217)
T COG0269 137 --HRGRDAQAAGKSWGEDDLEKIKKLSD-LGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAITGA 198 (217)
T ss_pred --EecccHhhcCCCccHHHHHHHHHhhc-cCceEEEecCC-CHHHHHHHhcCCCCEEEECchhcCC
Confidence 1122222122222 334444444432 34778888886 7899999999999999999988643
|
|
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0081 Score=49.36 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.+++.++++.++.+.|.+.+...+||+|+ ++++|++++.|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~ 50 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALA 50 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHH
Confidence 5678899999999999999999999999999 99999999999988654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.011 Score=49.60 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=48.4
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 169 YMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 169 im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
+|.+ +++++.++.++.++...|.++++..+||+++++++|++|..|++++...
T Consensus 4 ~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~~~l~Giit~~di~~~~~~ 56 (117)
T COG0517 4 IMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDGKLVGIITERDILRALAA 56 (117)
T ss_pred cccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHhc
Confidence 3445 8999999999999999999999999999998899999999999998754
|
|
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.038 Score=45.95 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=42.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++++++.+.++.++++.|.+.+...+||+|+++++|+++..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~G~v~~~~l~~~~ 48 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDGDPRLGIVTRTDLLDAV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecCCeEEEEEEHHHHHHHH
Confidence 56788999999999999999999999999888899999999998764
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.034 Score=56.19 Aligned_cols=81 Identities=19% Similarity=0.084 Sum_probs=55.4
Q ss_pred cccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCC
Q 010640 295 GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGA 374 (505)
Q Consensus 295 g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA 374 (505)
-++-+.+++..+.+.|+|++.+|- +..|....+...-.+..+..+ ++..++||+|-||| +..++..++.+||
T Consensus 231 ~S~h~~~~~~~a~~~~~dyi~~gp----vf~t~tk~~~~~~g~~~~~~~---~~~~~~Pv~AiGGI-~~~~~~~~~~~g~ 302 (312)
T PRK08999 231 ASCHDAEELARAQRLGVDFAVLSP----VQPTASHPGAAPLGWEGFAAL---IAGVPLPVYALGGL-GPGDLEEAREHGA 302 (312)
T ss_pred EecCCHHHHHHHHhcCCCEEEECC----CcCCCCCCCCCCCCHHHHHHH---HHhCCCCEEEECCC-CHHHHHHHHHhCC
Confidence 366788999999999999997761 111211111100112333333 33457999999999 9999999999999
Q ss_pred CEEEecccc
Q 010640 375 STVMMGSFL 383 (505)
Q Consensus 375 ~~V~~G~~f 383 (505)
++|.+-+.|
T Consensus 303 ~gva~i~~~ 311 (312)
T PRK08999 303 QGIAGIRGL 311 (312)
T ss_pred CEEEEEEEe
Confidence 999776654
|
|
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.12 Score=49.05 Aligned_cols=125 Identities=21% Similarity=0.206 Sum_probs=89.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.+..+.+...+++ +-.+.. ..-+..++.+++. ++++-+..+.|.+.|..+.++|+++|. +..
T Consensus 63 ~~~mi~~a~~l~~~~~~i~-iKIP~T--~~Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yis-------pyv 130 (213)
T TIGR00875 63 AEGMVEEAKELAKLAPNIV-VKIPMT--SEGLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVS-------PFV 130 (213)
T ss_pred HHHHHHHHHHHHHhCCCeE-EEeCCC--HHHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEE-------eec
Confidence 3445666677766655533 322211 1225677777766 788888789999999999999999883 233
Q ss_pred cccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| ...+|.+....+.++.+..+.. +..|++ ..+++..++..+..+|||.|-++..++
T Consensus 131 gR-i~d~g~dg~~~v~~~~~~~~~~~~~tkIla-AS~r~~~~v~~~~~~G~d~vTip~~vl 189 (213)
T TIGR00875 131 GR-LDDIGGDGMKLIEEVKTIFENHAPDTEVIA-ASVRHPRHVLEAALIGADIATMPLDVM 189 (213)
T ss_pred ch-HHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-eccCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 33 3456777788888888777654 455555 689999999999999999999987654
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0066 Score=63.80 Aligned_cols=60 Identities=23% Similarity=0.255 Sum_probs=55.8
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
.+.+++++|+|+.++++++.+.++.++++.+.+++..++||.++ +.++|+|..+|++...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLM 246 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHh
Confidence 46789999999999999999999999999999999999999976 8999999999998753
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.074 Score=50.60 Aligned_cols=119 Identities=15% Similarity=0.080 Sum_probs=71.0
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
.+.+.+.+++.+++.. ... . ....++..+.-.++.-++-+.+++..+.+.|+|++.+|- +..|....+.
T Consensus 72 ~~lA~~~~adGVHlg~--~d~----~-~~~~r~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgp----vf~T~tK~~~ 140 (211)
T PRK03512 72 WRLAIKHQAYGVHLGQ--EDL----E-TADLNAIRAAGLRLGVSTHDDMEIDVALAARPSYIALGH----VFPTQTKQMP 140 (211)
T ss_pred HHHHHHcCCCEEEcCh--HhC----C-HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC----ccCCCCCCCC
Confidence 4455666888786622 111 0 122333332223334467789999999999999998861 1112111111
Q ss_pred CcC-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRG-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+ .+..+.++.+.. .++||++-|||. ..++.+++..||++|.+-+.|..
T Consensus 141 ~~~~G~~~l~~~~~~~--~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisai~~ 191 (211)
T PRK03512 141 SAPQGLAQLARHVERL--ADYPTVAIGGIS-LERAPAVLATGVGSIAVVSAITQ 191 (211)
T ss_pred CCCCCHHHHHHHHHhc--CCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhHhhC
Confidence 111 122333332211 369999999986 89999999999999988888754
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.038 Score=59.76 Aligned_cols=82 Identities=24% Similarity=0.242 Sum_probs=57.3
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 296 ~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
.+.+.+++..+.+.|+|++.+|- +..+....+.....+..+..+ +...++||++-||| +..++..++.+||+
T Consensus 396 S~h~~~e~~~a~~~gadyi~~gp----if~t~tk~~~~~~g~~~~~~~---~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKDGADYIGCGG----VFPTNTKANNKTIGLDGLREV---CEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhcCCCEEEECC----eecCCCCCCCCCCCHHHHHHH---HHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 67899999999999999997751 221211111100123344443 33457999999999 59999999999999
Q ss_pred ---EEEecccccC
Q 010640 376 ---TVMMGSFLAG 385 (505)
Q Consensus 376 ---~V~~G~~f~~ 385 (505)
+|.+++.+..
T Consensus 468 ~~~gvav~~~i~~ 480 (502)
T PLN02898 468 NLKGVAVVSALFD 480 (502)
T ss_pred cCceEEEEeHHhc
Confidence 9999998864
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.033 Score=51.02 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhCCCce-EEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCC
Q 010640 276 QIEMIKYAKKTYPELD-VIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGV 352 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~-Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~i 352 (505)
+.+.++.+++..|..+ |.+ ++.+.+++..+.++|+|+|.+.+ + .++.+.++.+.++. .++
T Consensus 66 i~~av~~~~~~~~~~~~I~V-Ev~~~ee~~ea~~~g~d~I~lD~-------------~---~~~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEV-EVENLEEAEEALEAGADIIMLDN-------------M---SPEDLKEAVEELRELNPRV 128 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEE-EESSHHHHHHHHHTT-SEEEEES-----------------CHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHhCCCEEEecC-------------c---CHHHHHHHHHHHhhcCCcE
Confidence 6778888888887664 655 88999999999999999997653 1 22334444443222 248
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+.++||| |...+......|+|.+.+|+..
T Consensus 129 ~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 129 KIEASGGI-TLENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp EEEEESSS-STTTHHHHHHTT-SEEEECHHH
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEcChhh
Confidence 89999996 6778888889999999999864
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.024 Score=59.99 Aligned_cols=63 Identities=10% Similarity=0.076 Sum_probs=58.4
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~ 224 (505)
.+.+++++|+|+.++.+++.+.+.+++.+.+.+++..++||.++ +.++|++..+|++......
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999994 8999999999999987653
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.19 Score=48.39 Aligned_cols=126 Identities=13% Similarity=0.213 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
....++.+.++|++.+.+|..... ......++.+|+.--..-+....-+..+....++. -+|.|-+ +..+|....
T Consensus 71 P~~~i~~~~~aGad~it~H~Ea~~-~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~-~vD~VLvMsV~PGf~GQ-- 146 (229)
T PRK09722 71 PQDYIDQLADAGADFITLHPETIN-GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIH-LLDKITVMTVDPGFAGQ-- 146 (229)
T ss_pred HHHHHHHHHHcCCCEEEECccCCc-chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH-hcCEEEEEEEcCCCcch--
Confidence 557888999999999999875321 12456677777762122333333355666665555 3787765 433332111
Q ss_pred cccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.+ -..++.-+.++++...+.+ +.|-.||||. ..-+.++..+|||.+.+|+.
T Consensus 147 ~f---i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 147 PF---IPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred hc---cHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEChH
Confidence 11 1123444555555554433 6699999987 66888999999999999953
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=56.97 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. ..+. ..+. .+.+..+.++.+ ..++||+++|||++..|+.+++.+||+.|.
T Consensus 33 ~~~a~~~~~~g~~~l~i~Dl~~~-------~~~~-~~n~~~i~~i~~---~~~~pv~~gGGi~s~~d~~~l~~~G~~~vv 101 (258)
T PRK01033 33 INAVRIFNEKEVDELIVLDIDAS-------KRGS-EPNYELIENLAS---ECFMPLCYGGGIKTLEQAKKIFSLGVEKVS 101 (258)
T ss_pred HHHHHHHHHcCCCEEEEEECCCC-------cCCC-cccHHHHHHHHH---hCCCCEEECCCCCCHHHHHHHHHCCCCEEE
Confidence 356678888999888653 2110 0111 244555554443 457999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+..+.
T Consensus 102 igs~~~~ 108 (258)
T PRK01033 102 INTAALE 108 (258)
T ss_pred EChHHhc
Confidence 9987654
|
|
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.013 Score=48.71 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=42.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.+++.+.++.++.+.|.+.+...+||+|+++++|+|+..|++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~~~~~G~v~~~~l~~~~ 48 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDDGRLVGIVTDRDLRNRV 48 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEECCEEEEEEEhHHHHHHH
Confidence 67788999999999999999999999999889999999999998643
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0095 Score=52.64 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=43.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
+++++++++++.++++.|.+.+...+||+|+++++|++|..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~dl~~~~~ 49 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDGGKLVGIVSESDILKLLV 49 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeECCeEEEEecHHHHHHHHH
Confidence 677899999999999999999999999998899999999999987653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.016 Score=56.02 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=52.9
Q ss_pred HHHHHHHHH-cCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 300 MYQAQNLIE-AGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 300 ~e~a~~l~~-aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
.+.|+.+.+ .|+|.+.+. ..+. ..+. ......+.+++ +..++||..+|||++-+|+.+++.+||+-|
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a-------~~~~-~~n~~~I~~i~---~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGA-------KAQH-AREFDYIKSLR---RLTTKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECccc-------ccCC-cchHHHHHHHH---hhcCCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 367777777 699988653 2110 0111 12344444444 456799999999999999999999999999
Q ss_pred EecccccC
Q 010640 378 MMGSFLAG 385 (505)
Q Consensus 378 ~~G~~f~~ 385 (505)
.+||..+.
T Consensus 103 vigt~a~~ 110 (234)
T PRK13587 103 IVGTKGIQ 110 (234)
T ss_pred EECchHhc
Confidence 99998654
|
|
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0099 Score=50.66 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=43.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~ 222 (505)
++.++.++.++.+++++|.+.+...+||+|+ |+++|+|+..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~ 51 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLG 51 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhh
Confidence 5678899999999999999999999999987 89999999999987653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=49.22 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=42.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+.+...+||+|+ |+++|++|.+|+++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~ 50 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRAL 50 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHH
Confidence 4678899999999999999999999999998 9999999999998754
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.054 Score=53.87 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
+.+.++.+++..|..+|.+ ++.|.+++..+.++|+|.|.+.+ ..++.+.++.+..+ .++.+.
T Consensus 195 i~~av~~~r~~~~~~kIeV-Ev~sleea~ea~~~gaDiI~LDn----------------~s~e~~~~av~~~~-~~~~ie 256 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEV-EVENLDELDQALKAGADIIMLDN----------------FTTEQMREAVKRTN-GRALLE 256 (296)
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEeCC----------------CChHHHHHHHHhhc-CCeEEE
Confidence 5677778887777677766 89999999999999999997653 12344445444443 257889
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++||| |...+.+.-..|+|.+.+|.+..
T Consensus 257 aSGGI-~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 257 VSGNV-TLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 99986 67889899999999999998653
|
|
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0091 Score=50.50 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHh
Confidence 5678899999999999999999999999999 9999999999998654
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.013 Score=48.80 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=41.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~ 219 (505)
++.++.+++++.++.+.|.+.+.+.+||+|+|+++|+++..|++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~i~~~~l~~ 46 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCENDRLVGIVTDRDIVV 46 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEhHHHHH
Confidence 577899999999999999999999999998899999999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.056 Score=44.51 Aligned_cols=46 Identities=28% Similarity=0.293 Sum_probs=41.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
++.++..+.++.++++.|.+.+...+||+|+ ++++|+++..+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~ 48 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRN 48 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhc
Confidence 5678889999999999999999999999998 999999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.16 Score=48.30 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=89.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+...+.+..+.+....+ .|-.+.- ..-+..++.+++. ++++-+..+.|...+..+.++|+++|.. ..
T Consensus 63 ~~~m~~~a~~l~~~~~~i-~iKIP~T--~~G~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp-------yv 130 (214)
T PRK01362 63 AEGMIKEGRELAKIAPNV-VVKIPMT--PEGLKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSP-------FV 130 (214)
T ss_pred HHHHHHHHHHHHHhCCCE-EEEeCCC--HHHHHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEe-------ec
Confidence 344556666676665543 3322221 1225667777776 7888887889999999999999998842 33
Q ss_pred cccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| ...+|.+....+.++.+..+..+ -+-|....+++..++..+..+||+.+-++..++
T Consensus 131 gR-i~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G~d~iTi~~~vl 189 (214)
T PRK01362 131 GR-LDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLEAALAGADIATIPYKVI 189 (214)
T ss_pred ch-HhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 33 34567777888888888776654 334444799999999999999999999886553
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.21 Score=49.46 Aligned_cols=91 Identities=20% Similarity=0.158 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
.+.+.++.+|+..|...|.+ ++.+.++++.+.++|+|.|.+.+ . +++.+.++.+..+ ..++
T Consensus 174 ~i~~av~~~r~~~~~~kIeV-Ev~tleea~ea~~~GaDiI~lDn-------------~---~~e~l~~~v~~l~~~~~~~ 236 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITV-EADTIEQALTVLQASPDILQLDK-------------F---TPQQLHHLHERLKFFDHIP 236 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCcCEEEECC-------------C---CHHHHHHHHHHHhccCCCE
Confidence 46678888888877667666 88999999999999999997642 1 1233344444442 2357
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+.++||| |...+......|+|.+.+|.++
T Consensus 237 ~leasGGI-~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 237 TLAAAGGI-NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence 78888886 7889999999999999999875
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.082 Score=51.80 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCccEE-EEeC-------CCCC-chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccC
Q 010640 250 KERLEHLVKAGVNVV-VLDS-------SQGN-SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMG 319 (505)
Q Consensus 250 ~e~~~~lieaGad~I-~i~~-------~~g~-~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g 319 (505)
.++++.+.++|+-++ .+.. ..|. .....+.|+.+++.. ++|||.. -.....+|+.|.++|+|+|+-+-
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V-~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe- 97 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDYIDESE- 97 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhC-CCCEEEEeeccHHHHHHHHHHcCCCEEEccC-
Confidence 467777778886555 4321 1222 134567888899987 8999885 45678999999999999996321
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+ -.|. ..+ ......++++|+++ |++|-.+...+..+||+++
T Consensus 98 -------~-----lrPa-de~--~~~~K~~f~vpfma--d~~~l~EAlrai~~GadmI 138 (287)
T TIGR00343 98 -------V-----LTPA-DWT--FHIDKKKFKVPFVC--GARDLGEALRRINEGAAMI 138 (287)
T ss_pred -------C-----CCcH-HHH--HHHHHHHcCCCEEc--cCCCHHHHHHHHHCCCCEE
Confidence 1 1131 211 12223345899999 9999999999999999865
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.034 Score=52.17 Aligned_cols=122 Identities=25% Similarity=0.310 Sum_probs=81.6
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
+..+|+..-- ..+.++.+.++|+++++ +.+.. .+.++...+. ++|++- ++.|+.++..+.++|++.++
T Consensus 64 ~~lIGAGTVL---~~~q~~~a~~aGa~fiV---sP~~~---~ev~~~a~~~--~ip~~P-G~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 64 EALIGAGTVL---NPEQARQAIAAGAQFIV---SPGLN---PEVAKAANRY--GIPYIP-GVATPTEIMAALELGASALK 131 (211)
T ss_pred ccEEcccccc---CHHHHHHHHHcCCCEEE---CCCCC---HHHHHHHHhC--CCcccC-CCCCHHHHHHHHHcChhhee
Confidence 4566665322 34778889999999996 33332 2445545454 788776 68999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.= ....+ +|.+.+.++. ..--++++++.|||... .+...+++|+.+|.+|+-|.
T Consensus 132 ~F-------Pa~~~--Gg~~~~ka~~-----gP~~~v~~~pTGGVs~~-N~~~yla~gv~avG~Gs~l~ 185 (211)
T COG0800 132 FF-------PAEVV--GGPAMLKALA-----GPFPQVRFCPTGGVSLD-NAADYLAAGVVAVGLGSWLV 185 (211)
T ss_pred ec-------Ccccc--CcHHHHHHHc-----CCCCCCeEeecCCCCHH-HHHHHHhCCceEEecCcccc
Confidence 61 00111 0112222110 01124899999998655 99999999999999999774
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.084 Score=50.89 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=77.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHc-CCCEEEE-ccCCcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEA-GVDGLRV-GMGSGS 322 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~a-Gad~I~v-~~g~g~ 322 (505)
......++.+.++|+|.+.+|...+.. ...+.++.+++. +..+.+ ..-.+.+....+.+. .+|.|.+ +..+|.
T Consensus 75 ~~p~~~i~~~~~~Gad~itvH~ea~~~-~~~~~l~~ik~~--G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~ 151 (228)
T PTZ00170 75 SNPEKWVDDFAKAGASQFTFHIEATED-DPKAVARKIREA--GMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGF 151 (228)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccCCch-HHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCC
Confidence 346677788999999999998865431 145667777765 444333 233466777666433 3666532 322221
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
-. ..+....+.-+.++++... ...|..+|||.- ..+..+..+|||.+.+|+.+.
T Consensus 152 ~g-----q~~~~~~~~ki~~~~~~~~--~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~ 205 (228)
T PTZ00170 152 GG-----QSFMHDMMPKVRELRKRYP--HLNIQVDGGINL-ETIDIAADAGANVIVAGSSIF 205 (228)
T ss_pred CC-----cEecHHHHHHHHHHHHhcc--cCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHh
Confidence 10 0011112333444433322 377999999865 588899999999999999864
|
|
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.017 Score=48.16 Aligned_cols=47 Identities=9% Similarity=0.291 Sum_probs=43.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+.+...+||+|+++++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITERDLVKKV 48 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 56788999999999999999999999999989999999999998754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.016 Score=48.57 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=42.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
++.++.+++++.++++.|.+++...+||+|+ ++++|++|.+|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKV 50 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHH
Confidence 5788999999999999999999999999985 6999999999998753
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.019 Score=55.49 Aligned_cols=76 Identities=21% Similarity=0.212 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.++.+.+.|++.+.+- ..+ ...+. .+....+..+ ++..++|++++|||++..|+.+++.+||+.|.
T Consensus 33 ~~~a~~~~~~g~~~i~i~dl~~-------~~~~~-~~n~~~~~~i---~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vi 101 (232)
T TIGR03572 33 VNAARIYNAKGADELIVLDIDA-------SKRGR-EPLFELISNL---AEECFMPLTVGGGIRSLEDAKKLLSLGADKVS 101 (232)
T ss_pred HHHHHHHHHcCCCEEEEEeCCC-------cccCC-CCCHHHHHHH---HHhCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 345667778899866552 111 00011 1334444444 34467999999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+|+.++..
T Consensus 102 lg~~~l~~ 109 (232)
T TIGR03572 102 INTAALEN 109 (232)
T ss_pred EChhHhcC
Confidence 99987644
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.049 Score=45.25 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=42.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC----CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD----GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~----g~l~GiIt~~dil~~~ 221 (505)
....+.+++++.++.+.|.+.+...+||+|+ |+++|+|+.+|+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence 5677899999999999999999999999987 7899999999998765
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.046 Score=45.75 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=40.1
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKND-VDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~-i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++..+.++.++++.|.+.+ ...+||+|+|+++|+++..|+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 49 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKGRLLGIFTERDIVRLT 49 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCCCcEEEEEeHHHHHHHH
Confidence 5678899999999999998888 5667777669999999999998754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.11 Score=51.61 Aligned_cols=128 Identities=19% Similarity=0.262 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEEE----------------cccCCHHHHHHHHH-c
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVIG----------------GNVVTMYQAQNLIE-A 309 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi~----------------g~V~t~e~a~~l~~-a 309 (505)
..+.++.+++.|.+.+.++.++-.....++..+++.+... ++.|-. ....+++++..+.+ .
T Consensus 86 ~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~t 165 (282)
T TIGR01859 86 SYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKET 165 (282)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHH
Confidence 4577888889999999998776544444555555544321 343321 12448999999997 9
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC--CCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG--GISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|+|++-++.|.-...+.. .... .+..|.++++ ..++|+++=| ||. ..++.+++.+|++.|-++|-+.
T Consensus 166 gvD~Lavs~Gt~hg~~~~-~~~l---~~e~L~~i~~---~~~iPlv~hGgSGi~-~e~i~~~i~~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 166 GVDYLAAAIGTSHGKYKG-EPGL---DFERLKEIKE---LTNIPLVLHGASGIP-EEQIKKAIKLGIAKINIDTDCR 234 (282)
T ss_pred CcCEEeeccCccccccCC-CCcc---CHHHHHHHHH---HhCCCEEEECCCCCC-HHHHHHHHHcCCCEEEECcHHH
Confidence 999998775432211111 1112 2444544443 4579999999 764 5779999999999999999874
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.083 Score=53.88 Aligned_cols=125 Identities=26% Similarity=0.336 Sum_probs=73.0
Q ss_pred EEEeecCCccHHHHHHHHHHcC-ccEEEEeCCCCCchhHHHHHHHHHHhCC--------CceEEE--ccc-CCHHHHHHH
Q 010640 239 VGAAIGTRESDKERLEHLVKAG-VNVVVLDSSQGNSSFQIEMIKYAKKTYP--------ELDVIG--GNV-VTMYQAQNL 306 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaG-ad~I~i~~~~g~~~~~~~~i~~l~~~~~--------~~~Vi~--g~V-~t~e~a~~l 306 (505)
+++++.+. ...+.+..+.+.| .-++. .. ...+...+.++++++.+| ...|.+ |.- .+.+.+..|
T Consensus 41 vsa~MDtV-te~~mAiama~~Gglgvih--~~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L 116 (352)
T PF00478_consen 41 VSAPMDTV-TESEMAIAMARLGGLGVIH--RN-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEAL 116 (352)
T ss_dssp EE-SSTTT-SSHHHHHHHHHTTSEEEEE--SS-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHH
T ss_pred EecCcccc-chHHHHHHHHHhcCCceec--CC-CCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHH
Confidence 34444332 2446676777764 44443 22 223456677777766431 223322 221 247888999
Q ss_pred HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
.++|+|+|++... .|+..-.+..+..+++... ++|||+ |.|.|++.....+.+|||+|-+|
T Consensus 117 ~~agvD~ivID~a----------~g~s~~~~~~ik~ik~~~~--~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 117 VEAGVDVIVIDSA----------HGHSEHVIDMIKKIKKKFP--DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHTT-SEEEEE-S----------STTSHHHHHHHHHHHHHST--TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHcCCCEEEcccc----------CccHHHHHHHHHHHHHhCC--CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 9999999988521 1222223444544444332 488997 99999999999999999999887
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.074 Score=52.85 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
.+.+.++..++..|..++.+ +|.|.+++..+.++|+|.|.+.+ + +++.+.++....+ .-++
T Consensus 185 ~i~~ai~~~r~~~~~~kIeV-Ev~tl~ea~eal~~gaDiI~LDn-------------m---~~e~vk~av~~~~~~~~~v 247 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEV-EVDSLEQLDEVLAEGAELVLLDN-------------F---PVWQTQEAVQRRDARAPTV 247 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEE-EcCCHHHHHHHHHcCCCEEEeCC-------------C---CHHHHHHHHHHHhccCCCE
Confidence 45677888888777677766 89999999999999999997652 1 1333444433321 2247
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+.++||| |...+.+.-..|+|.+.+|....
T Consensus 248 ~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 248 LLESSGGL-TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 79999996 78889899999999999998753
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.074 Score=53.56 Aligned_cols=101 Identities=22% Similarity=0.364 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC----C--CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHH-cCCCEEEEcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ----G--NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIE-AGVDGLRVGM 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~----g--~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~-aGad~I~v~~ 318 (505)
++..+.++.+.++|++.+.||+-. | ...-.++.++.+++.+|++|+++ |++.+.+++....+ .|+|+|.++-
T Consensus 155 ~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecc
Confidence 457788889999999999998732 2 22345889999999998899999 89999999998887 9999998863
Q ss_pred CCcceeecccc--cccCcChHHHHHHHHHHHhh
Q 010640 319 GSGSICTTQEV--CAVGRGQATAVYKVSSIAAQ 349 (505)
Q Consensus 319 g~g~~~~~~~~--~g~g~p~~~~l~~v~~~~~~ 349 (505)
| .......+ .+.+.+....+.+-...+.+
T Consensus 235 g--lL~NPa~F~~~~~~~~~~~~~~~~l~~~~e 265 (358)
T KOG2335|consen 235 G--LLYNPALFLTAGYGPTPWGCVEEYLDIARE 265 (358)
T ss_pred h--hhcCchhhccCCCCCCHHHHHHHHHHHHHH
Confidence 2 22222334 44444555555444444443
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.091 Score=52.13 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 275 FQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 275 ~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
.+.+.++..|+..| ..+|.+ +|.|.+++..+.++|+|.|.+.+ + +++.+.++.+..+. ++.
T Consensus 182 ~i~~av~~~r~~~~~~~kIeV-Ev~tleea~~a~~agaDiImLDn-------------m---spe~l~~av~~~~~-~~~ 243 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEV-EVESLAAAEEAAAAGADIIMLDN-------------M---SLEQIEQAITLIAG-RSR 243 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEE-ECCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhcC-ceE
Confidence 46678888888875 456666 89999999999999999997653 1 23444455444443 578
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.++||| |...+...-..|+|.+.+|.+..
T Consensus 244 leaSGGI-~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 244 IECSGNI-DMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred EEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 8888886 78888888899999999998653
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.021 Score=55.08 Aligned_cols=75 Identities=24% Similarity=0.347 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+- ..+ ...+.+ ..+..+.++++ ..++|+..+|||++..|+.+++.+||+.|.
T Consensus 31 ~~~a~~~~~~g~~~l~v~dl~~-------~~~g~~-~~~~~i~~i~~---~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vv 99 (230)
T TIGR00007 31 VEAAKKWEEEGAERIHVVDLDG-------AKEGGP-VNLPVIKKIVR---ETGVPVQVGGGIRSLEDVEKLLDLGVDRVI 99 (230)
T ss_pred HHHHHHHHHcCCCEEEEEeCCc-------cccCCC-CcHHHHHHHHH---hcCCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 456777888999988763 110 111211 23444444443 456899999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+..+.
T Consensus 100 lgs~~l~ 106 (230)
T TIGR00007 100 IGTAAVE 106 (230)
T ss_pred EChHHhh
Confidence 9987764
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.022 Score=55.02 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. ..+ ... |.+ ..+..+.+.++...+|+..+|||++..|+.+++.+||+-|.
T Consensus 32 ~~~a~~~~~~g~~~l~ivDLda-------a~~--g~~--~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vv 100 (229)
T PF00977_consen 32 VEVAKAFNEQGADELHIVDLDA-------AKE--GRG--SNLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVV 100 (229)
T ss_dssp HHHHHHHHHTT-SEEEEEEHHH-------HCC--THH--HHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHcCCCEEEEEEccC-------ccc--Cch--hHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEE
Confidence 356677778899988653 110 001 111 22223344555667999999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+||..+..
T Consensus 101 igt~~~~~ 108 (229)
T PF00977_consen 101 IGTEALED 108 (229)
T ss_dssp ESHHHHHC
T ss_pred eChHHhhc
Confidence 99986644
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.16 Score=49.52 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCC-C--ceEEE-cccCCHH-----HHHHHHHcCCCEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYP-E--LDVIG-GNVVTMY-----QAQNLIEAGVDGL 314 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~-~--~~Vi~-g~V~t~e-----~a~~l~~aGad~I 314 (505)
-...++.+++.|++-+-+... .|....+.+.++.+++... + +.||. -...+.+ ..+.+.++|+|+|
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFV 164 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFI 164 (257)
T ss_pred HHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEE
Confidence 455667788889988855432 2445566777777777653 2 34444 1222323 3356778999999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhh----cCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ----SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~----~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+-+.|-+. +..++..+...++..++ .++.|=++|||++..+..+.+.+|.+ .+|.-|+
T Consensus 165 KTSTGf~~----------~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~--~lg~~~~ 226 (257)
T PRK05283 165 KTSTGKVP----------VNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADE--ILGADWA 226 (257)
T ss_pred EcCCCCCC----------CCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHH--HhChhhc
Confidence 87643210 11345555555555432 34789999999999999999999875 3454443
|
|
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.019 Score=47.65 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=43.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~ 222 (505)
++++++++.++.++.+.|.+.+...+||+|+ |+++|++|..|+++...
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~ 51 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALA 51 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHH
Confidence 5678999999999999999999999999976 79999999999998753
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.024 Score=47.15 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=40.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
.+.++.++.++.++++.|.+++...++|.++|+++|++|.+|+++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G~v~~~dl~~~~ 48 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMERGELVGLLTFREVLQAM 48 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeCCEEEEEEEHHHHHHHH
Confidence 56788999999999999988887777766669999999999998764
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.029 Score=54.07 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 335 p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+..+.++.+ ..++||+++|||++.+|+.+++.+||+.|.+|+...
T Consensus 60 ~n~~~i~~i~~---~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 60 KNLDVVKNIIR---ETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred chHHHHHHHHh---hCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 34555555443 457999999999999999999999999999998865
|
|
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.018 Score=59.79 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=82.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----------ccccccccccc-cCCCceEe
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----------DNKVKIFDYMR-DCSSNVSV 179 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----------~~~~~v~~im~-~~~~~~~v 179 (505)
+.+.|..++-++...+.+ ++ +||.|.+ .+.+..++|.+-+.... -...++.+.-. ...++..+
T Consensus 165 ~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~--~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i 242 (381)
T KOG1764|consen 165 VSISPESSLLDAVLLLIKSRIHRVPVIDPE--TGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASI 242 (381)
T ss_pred eeecCcHHHHHHHHHHHhCCccceeeeccc--ccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheee
Confidence 778899898888888877 66 9999842 77999999998875110 01112222110 11258889
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCC
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYP 224 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~ 224 (505)
..++++.+|+++|.+.++..+||||. |+.+|.+++.|+.......
T Consensus 243 ~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~ 288 (381)
T KOG1764|consen 243 SEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREG 288 (381)
T ss_pred cCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcC
Confidence 99999999999999999999999999 8889999999998876543
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.074 Score=53.80 Aligned_cols=133 Identities=17% Similarity=0.087 Sum_probs=77.2
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEEc------ccCC-----------HHHHHHHHHc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIGG------NVVT-----------MYQAQNLIEA 309 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~g------~V~t-----------~e~a~~l~~a 309 (505)
..++.+++.|++++.++...|.. ..+++.+..+.+.. -++|+++. .+.+ ...++.+.+.
T Consensus 150 ~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaEL 229 (348)
T PRK09250 150 ASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATI 229 (348)
T ss_pred ecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHH
Confidence 34677899999999998776632 23344444433322 17888772 2212 1246888899
Q ss_pred CCCEEEEccCC--cc---eeec----ccccccCc-ChHHHHHHHHHHHhhcCCcEEecCCCCCHH-----HHHHH---HH
Q 010640 310 GVDGLRVGMGS--GS---ICTT----QEVCAVGR-GQATAVYKVSSIAAQSGVPVIADGGISNSG-----HIVKA---LV 371 (505)
Q Consensus 310 Gad~I~v~~g~--g~---~~~~----~~~~g~g~-p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~-----di~ka---l~ 371 (505)
|||+|++---+ .+ +..+ +....... +....+..+.+.|-.-.+||+.+||=.... .+..+ +.
T Consensus 230 GADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~ 309 (348)
T PRK09250 230 GADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKR 309 (348)
T ss_pred cCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999985211 11 0000 01111111 233344444444421258999999988532 35567 88
Q ss_pred hCCCEEEecccc
Q 010640 372 LGASTVMMGSFL 383 (505)
Q Consensus 372 lGA~~V~~G~~f 383 (505)
.||.++.+|+-.
T Consensus 310 aGa~Gv~iGRNI 321 (348)
T PRK09250 310 AGGMGLIIGRKA 321 (348)
T ss_pred cCCcchhhchhh
Confidence 999999999854
|
|
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.11 Score=51.53 Aligned_cols=89 Identities=19% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 276 QIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 276 ~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..+.++.+|+..| ..+|.+ +|.|.+++..+.++|+|.|.+.+ ..++.+.++.+..+ ...|+
T Consensus 180 i~~ai~~~r~~~~~~~kIeV-Ev~tleea~ea~~~gaDiI~LDn----------------~s~e~l~~av~~~~-~~~~l 241 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEV-EVDTLDQLEEALELGVDAVLLDN----------------MTPDTLREAVAIVA-GRAIT 241 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHHcCCCEEEeCC----------------CCHHHHHHHHHHhC-CCceE
Confidence 5678888888875 345555 89999999999999999997653 12344555555443 35789
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
-++||| |...+.+.-..|+|.+.+|...
T Consensus 242 eaSGGI-~~~ni~~yA~tGVD~Is~Galt 269 (281)
T PRK06106 242 EASGRI-TPETAPAIAASGVDLISVGWLT 269 (281)
T ss_pred EEECCC-CHHHHHHHHhcCCCEEEeChhh
Confidence 999996 6788888889999999999865
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.16 Score=56.54 Aligned_cols=124 Identities=12% Similarity=0.150 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-cCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-VVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+..+.+....+.|+++|.|-+...+..+..+.++.+++.. ++||+.+. +.+......+..+|+|+|-+-.
T Consensus 71 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~~v-~~PvLrKDFIid~~QI~ea~~~GADavLLI~-------- 141 (695)
T PRK13802 71 DPAALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRAAV-HIPVLRKDFIVTDYQIWEARAHGADLVLLIV-------- 141 (695)
T ss_pred CHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHHhC-CCCEEeccccCCHHHHHHHHHcCCCEeehhH--------
Confidence 5678888888999999988765544555678888888876 89999997 4688899999999999996531
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTE 388 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~E 388 (505)
+.+ + -..+.+..+.+...++.++. =++|..|+-+|+.+||+.+++=.+=+.+-|
T Consensus 142 ~~L-----~-~~~l~~l~~~a~~lGme~Lv--Evh~~~el~~a~~~ga~iiGINnRdL~tf~ 195 (695)
T PRK13802 142 AAL-----D-DAQLKHLLDLAHELGMTVLV--ETHTREEIERAIAAGAKVIGINARNLKDLK 195 (695)
T ss_pred hhc-----C-HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHhCCCCEEEEeCCCCccce
Confidence 111 1 12355566777778888888 899999999999999999988766554443
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.04 Score=51.97 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=75.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHHHHHHHcCCCEEEE-ccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~ 325 (505)
....++.+.++|++.+.+|.... ....+.++.+|+. ++... ...-+..+....+.. -+|.|.+ +..+|...
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~--~~~~~~i~~ik~~--g~k~GialnP~T~~~~~~~~l~-~vD~VlvMsV~PG~~G- 142 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEAT--EDPKETIKYIKEA--GIKAGIALNPETPVEELEPYLD-QVDMVLVMSVEPGFGG- 142 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGT--TTHHHHHHHHHHT--TSEEEEEE-TTS-GGGGTTTGC-CSSEEEEESS-TTTSS-
T ss_pred HHHHHHHHHhcCCCEEEEcccch--hCHHHHHHHHHHh--CCCEEEEEECCCCchHHHHHhh-hcCEEEEEEecCCCCc-
Confidence 44678889999999999988633 2456778888887 55432 222233343444433 5888765 44333111
Q ss_pred cccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+. ..++.-+.++++...+ .++.|..||||... .+.++.++||+.+.+||.+-
T Consensus 143 -q~f~---~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 143 -QKFI---PEVLEKIRELRKLIPENGLDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp -B--H---GGHHHHHHHHHHHHHHHTCGSEEEEESSESTT-THHHHHHHT--EEEESHHHH
T ss_pred -cccc---HHHHHHHHHHHHHHHhcCCceEEEEECCCCHH-HHHHHHHcCCCEEEECHHHh
Confidence 1110 1245556666665554 35899999998765 67788899999999998753
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.21 Score=50.36 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=69.6
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEccc-CCHHHHHHHHHcC--CCEE
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNV-VTMYQAQNLIEAG--VDGL 314 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V-~t~e~a~~l~~aG--ad~I 314 (505)
+.+++.+. -..+.+.+|.+.|.-.+ +|-.. ..+.+.++++...... ..+.+-+|.- .+.+.+..|.++| +|+|
T Consensus 49 i~AnMdtv-~~~~mA~~la~~g~~~~-iHk~~-~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~i 125 (343)
T TIGR01305 49 IAANMDTV-GTFEMAAALSQHSIFTA-IHKHY-SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFI 125 (343)
T ss_pred EecCCCcc-cCHHHHHHHHHCCCeEE-EeeCC-CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEE
Confidence 34444332 35577888888764332 12111 1122333333322221 1122222211 2567788888885 9999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++.. ..|+..-.+..+..+++... +.+||+ |.|.|++++..++.+|||+|.+|
T Consensus 126 viD~----------AhGhs~~~i~~ik~ir~~~p--~~~via-GNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 126 CLDV----------ANGYSEHFVEFVKLVREAFP--EHTIMA-GNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred EEEC----------CCCcHHHHHHHHHHHHhhCC--CCeEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 8852 12233334555555554332 355555 67999999999999999999766
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.13 Score=50.97 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh--hcCC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGV 352 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~i 352 (505)
.+.+.++.+|+..|...|.+ ++.+.++++.+.++|+|.|.+.+ + .++.+.++.+..+ ..++
T Consensus 175 ~i~~av~~~r~~~~~~kIeV-Ev~tleqa~ea~~agaDiI~LDn-------------~---~~e~l~~av~~~~~~~~~~ 237 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVV-EADTPKEAIAALRAQPDVLQLDK-------------F---SPQQATEIAQIAPSLAPHC 237 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEE-ECCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHHhhccCCCe
Confidence 45678888888776666666 88999999999999999997642 2 2334444444443 1357
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.+-++||| |...+...-..|+|.+.+|.+.
T Consensus 238 ~leaSGGI-~~~ni~~yA~tGvD~Is~gal~ 267 (284)
T PRK06096 238 TLSLAGGI-NLNTLKNYADCGIRLFITSAPY 267 (284)
T ss_pred EEEEECCC-CHHHHHHHHhcCCCEEEECccc
Confidence 78888886 6888999999999999999763
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.11 Score=51.84 Aligned_cols=120 Identities=19% Similarity=0.121 Sum_probs=72.9
Q ss_pred HHHHHHHcC------ccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEE-----c-ccC---C----HHHHHHHHH
Q 010640 252 RLEHLVKAG------VNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIG-----G-NVV---T----MYQAQNLIE 308 (505)
Q Consensus 252 ~~~~lieaG------ad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~-----g-~V~---t----~e~a~~l~~ 308 (505)
.++.+++.| +|++.++...|.. ..+++.+.++.+.. -++|+++ | .+. . ...++.+.+
T Consensus 120 sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaE 199 (304)
T PRK06852 120 DVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAAC 199 (304)
T ss_pred cHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHH
Confidence 366677877 8899888766632 23444444443322 1788876 2 221 1 224688889
Q ss_pred cCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH-HH----HHHHHH-hCCCEEEeccc
Q 010640 309 AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS-GH----IVKALV-LGASTVMMGSF 382 (505)
Q Consensus 309 aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~-~d----i~kal~-lGA~~V~~G~~ 382 (505)
+|||+|++-- ++. .+-...+.+.++.+.| ..+||+.+||=... .| +..++. .||.+|.+|+-
T Consensus 200 LGADIVKv~y------~~~----~~~g~~e~f~~vv~~~--g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRN 267 (304)
T PRK06852 200 LGADFVKVNY------PKK----EGANPAELFKEAVLAA--GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRN 267 (304)
T ss_pred HcCCEEEecC------CCc----CCCCCHHHHHHHHHhC--CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechh
Confidence 9999998852 000 0002235555555543 15899999988853 23 445777 89999999986
Q ss_pred c
Q 010640 383 L 383 (505)
Q Consensus 383 f 383 (505)
.
T Consensus 268 I 268 (304)
T PRK06852 268 I 268 (304)
T ss_pred h
Confidence 4
|
|
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.023 Score=47.87 Aligned_cols=47 Identities=17% Similarity=0.336 Sum_probs=41.7
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCeeEEeeCCeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKND-VDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~-i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+.+ ...+||+|+|+++|+|+..|++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~G~v~~~~l~~~~ 49 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDDGRPVGLIMREALMELL 49 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEECCeeEEEEEHHHHHHHH
Confidence 5667899999999999998877 8899999889999999999998754
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.021 Score=54.45 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=48.0
Q ss_pred HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 303 AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 303 a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
|..+...|...+.+. +.|.. .....+..+++ .. ++|++..|||++++++.+++.+|||.|.+|+
T Consensus 141 A~aae~~g~~ivyLe-~SG~~-----------~~~e~I~~v~~---~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 141 ALAAEYLGMPIVYLE-YSGAY-----------GPPEVVRAVKK---VLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred HHHHHHcCCeEEEeC-CCCCc-----------CCHHHHHHHHH---hcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 455556777777665 22221 22333433333 34 6999999999999999999999999999999
Q ss_pred ccc
Q 010640 382 FLA 384 (505)
Q Consensus 382 ~f~ 384 (505)
.+.
T Consensus 206 ai~ 208 (219)
T cd02812 206 IVE 208 (219)
T ss_pred hhh
Confidence 885
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.12 Score=52.69 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=68.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHH
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLE 254 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~ 254 (505)
++++...+.+..+.++.+++.++..++.| + ..+.+.
T Consensus 115 ~~v~~~~G~p~~~~i~~l~~~gi~v~~~v----------------------------------------~----s~~~A~ 150 (330)
T PF03060_consen 115 DVVSFGFGLPPPEVIERLHAAGIKVIPQV----------------------------------------T----SVREAR 150 (330)
T ss_dssp SEEEEESSSC-HHHHHHHHHTT-EEEEEE----------------------------------------S----SHHHHH
T ss_pred EEEEeecccchHHHHHHHHHcCCcccccc----------------------------------------C----CHHHHH
Confidence 67778888888888899998887554443 1 235677
Q ss_pred HHHHcCccEEEEeCCC--CCch----hHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 255 HLVKAGVNVVVLDSSQ--GNSS----FQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 255 ~lieaGad~I~i~~~~--g~~~----~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.+.|+|++++.... ||.. ....++..+++.+ ++||++ |++.+...+..+...|||++.++
T Consensus 151 ~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 151 KAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEES
T ss_pred HhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecC
Confidence 7889999999998632 3332 3788888888887 688876 89999999999999999999886
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.22 Score=46.31 Aligned_cols=109 Identities=23% Similarity=0.234 Sum_probs=78.3
Q ss_pred HHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEE
Q 010640 189 DEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVV 265 (505)
Q Consensus 189 ~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~ 265 (505)
.+-|.+.+...+. +|. .|..| +..+++....++. ....++.++ .+....+.+.|+|++-
T Consensus 91 Vd~L~~~Ga~IIA-~DaT~R~RP~~--~~~~~i~~~k~~~-----------~l~MAD~St----~ee~l~a~~~G~D~IG 152 (229)
T COG3010 91 VDALAEAGADIIA-FDATDRPRPDG--DLEELIARIKYPG-----------QLAMADCST----FEEGLNAHKLGFDIIG 152 (229)
T ss_pred HHHHHHCCCcEEE-eecccCCCCcc--hHHHHHHHhhcCC-----------cEEEeccCC----HHHHHHHHHcCCcEEe
Confidence 3455666776443 453 67888 8999988865543 345566653 3555667789999996
Q ss_pred EeCCC--CC----chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 266 LDSSQ--GN----SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 266 i~~~~--g~----~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
-+.+. ++ .......++.+.+. +++||+ |.+.|++.|+++++.|++++.||
T Consensus 153 TTLsGYT~~~~~~~~pDf~lvk~l~~~--~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVG 209 (229)
T COG3010 153 TTLSGYTGYTEKPTEPDFQLVKQLSDA--GCRVIAEGRYNTPEQAKKAIEIGADAVVVG 209 (229)
T ss_pred cccccccCCCCCCCCCcHHHHHHHHhC--CCeEEeeCCCCCHHHHHHHHHhCCeEEEEC
Confidence 54421 21 14567788888775 899998 88999999999999999999997
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.22 Score=50.14 Aligned_cols=126 Identities=11% Similarity=0.138 Sum_probs=72.3
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEccc-CCHHHHHHHHH--cCCCEE
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNV-VTMYQAQNLIE--AGVDGL 314 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V-~t~e~a~~l~~--aGad~I 314 (505)
+.+++.+. -..+.+..|.+.|.-.+ +|-.. ..+.+.++++..+... ..+.|-+|.- .+.+.+..|.+ +|+|+|
T Consensus 50 i~AnMdTV-~~~~mA~~la~~g~~~~-iHk~~-~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~i 126 (346)
T PRK05096 50 IAANMDTV-GTFEMAKALASFDILTA-VHKHY-SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFI 126 (346)
T ss_pred EecCCCcc-ccHHHHHHHHHCCCeEE-EecCC-CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEE
Confidence 34444332 35577888888764333 22211 1133344444433221 1222322211 24566778888 599999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++.. ..|+..-.+..+..+++... +++||+ |.|.|++.+...+.+|||+|-+|
T Consensus 127 viD~----------AhGhs~~~i~~ik~ik~~~P--~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 127 CIDV----------ANGYSEHFVQFVAKAREAWP--DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred EEEC----------CCCcHHHHHHHHHHHHHhCC--CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 8852 12333345556666655432 477777 99999999999999999998655
|
|
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.039 Score=55.13 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=91.6
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEe
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~ 242 (505)
..|.++|+|.....++.+++++++-.++..+.+..+.||+|+ .+++|+||.+|+........-.| ......+.++..
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~~t~ieK--VMtknp~tv~~~ 265 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPSTTIEK--VMTKNPITVRAK 265 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCCCccHHH--HhccCCeeeccc
Confidence 468899998889999999999999999999999999999999 99999999999998765432211 011112333333
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCC------chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGN------SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVD 312 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~------~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad 312 (505)
. .....+..++-.|.+.+-+..++-. ...++..++.+.++ | -+|.-.+..-+..+.+.+-+
T Consensus 266 t----sVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~~q~q----p-qvget~~d~I~~~l~e~~~~ 332 (432)
T COG4109 266 T----SVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQMIQRQ----P-QVGETISDQIANNLSEKGDE 332 (432)
T ss_pred c----hHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHHhccC----C-cccccHHHHHHhhhhhhccc
Confidence 2 2556677778889988866544321 12334444333332 1 12344455556666665544
|
|
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.015 Score=48.37 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=36.4
Q ss_pred ecCCCCHHHHHHHHHHCC-----CCeeEEeeC-CeeeeEEeechhhhh
Q 010640 179 VPANYDLGQIDEVLEKND-----VDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~-----i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
+.+++++.++++.|.+++ ...+||+|+ ++++|+||.+++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~ 49 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA 49 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence 467889999999998877 478999998 999999999998763
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.033 Score=45.84 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=41.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
++++++.+.++.++++.|.+.+...+||+|+++++|+++..|++..
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~g~v~~~~l~~~ 48 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDNGKVVGIVSARDLLGK 48 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeECCEEEEEEEHHHhhcc
Confidence 6788999999999999999888889999988999999999998853
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.052 Score=52.78 Aligned_cols=69 Identities=26% Similarity=0.273 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.|+...+.|++.+=+- .+ |.+....+.++ ++..++||...|||++ +++.+.+.+||+.|.+
T Consensus 41 ~~~A~~~~~~Ga~~lHvV----------DL---g~~n~~~i~~i---~~~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVI----------ML---GPNNDDAAKEA---LHAYPGGLQVGGGIND-TNAQEWLDEGASHVIV 103 (253)
T ss_pred HHHHHHHHHcCCCEEEEE----------EC---CCCcHHHHHHH---HHhCCCCEEEeCCcCH-HHHHHHHHcCCCEEEE
Confidence 578999999999988331 11 33444555444 4456799999999997 9999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
||....
T Consensus 104 GS~av~ 109 (253)
T TIGR02129 104 TSWLFT 109 (253)
T ss_pred CcHHHh
Confidence 997654
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.17 Score=48.48 Aligned_cols=111 Identities=17% Similarity=0.151 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE---Ecc-----c---CCHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI---GGN-----V---VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi---~g~-----V---~t~e~a~~l~~aGad~I~v 316 (505)
+..+.+..+.++|+..+.+.. .+.++.+++.. ++|++ -+. + .+.+.++.+.++|+|+|.+
T Consensus 24 ~~~~~a~a~~~~G~~~~~~~~--------~~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~ 94 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRANG--------VEDIKAIRAVV-DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIAL 94 (221)
T ss_pred HHHHHHHHHHHCCCeEEEcCC--------HHHHHHHHHhC-CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEE
Confidence 456677778888998887621 46777777764 67775 111 2 2467899999999998866
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhh-cCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ-SGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~-~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..... . .|....+.++.+.+++ .++|++. ++.+..++.++..+|++.+.++
T Consensus 95 d~~~~---~--------~p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 95 DATLR---P--------RPDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred eCCCC---C--------CCCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 42100 0 0100122344455555 6789998 8889999999999999998765
|
|
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.018 Score=39.39 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=35.1
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE 157 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~ 157 (505)
.++.+++++.++.+.|.+ ++ +||+++ +++++|+++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~g~i~~~~l~ 45 (49)
T smart00116 3 VTVSPDTTLEEALELLREHGIRRLPVVDE---EGRLVGIVTRRDII 45 (49)
T ss_pred eEecCCCcHHHHHHHHHHhCCCcccEECC---CCeEEEEEEHHHHH
Confidence 678899999999999987 65 899987 78999999998874
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.055 Score=61.45 Aligned_cols=167 Identities=17% Similarity=0.120 Sum_probs=98.6
Q ss_pred hHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcc---eeecccccccCcChHHHHHHHHHHHh
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGS---ICTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~---~~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
....+|..++...|...|-++-| +-.-.|.-..++.||.|-|+.|-|+ ..|+.. ...|.|.---+.|..+..-
T Consensus 1084 DLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~I-K~AGlPWELGlAEThQtLv 1162 (2142)
T KOG0399|consen 1084 DLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGI-KHAGLPWELGLAETHQTLV 1162 (2142)
T ss_pred HHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCccccccc-ccCCCChhhcchhhhhHHh
Confidence 33444444555545544433311 1111222234567888888754333 233322 2234454333344433322
Q ss_pred h----cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 Q----SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~----~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
. .++-+=.||+++++.||+-|-.+||+--.++|.=+- .+|-. |. -.
T Consensus 1163 ~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plI--------------------alGCi--Mm--------Rk 1212 (2142)
T KOG0399|consen 1163 LNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLI--------------------ALGCI--MM--------RK 1212 (2142)
T ss_pred hccccccEEEEecCccccchHHHHHHHhCchhhcccccHHH--------------------HHhhH--HH--------HH
Confidence 1 136677899999999999999999998888875221 01100 10 12
Q ss_pred ccccccccceeeeec-----cCC---chhhHHHHHHHHHHHHhhccCCCCHHHHHH
Q 010640 425 KAKLKIAQGVVGAVA-----DKG---SVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~-----~~~---~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
|+.+.+|.|+..+.| +.| .|.++.-.+.+++|-.|..+|.+++.|+-.
T Consensus 1213 CH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaEEvR~imakLGfrtldemvG 1268 (2142)
T KOG0399|consen 1213 CHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAEEVRGIMAKLGFRTLDEMVG 1268 (2142)
T ss_pred hccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHHhCcchHHHHhc
Confidence 456677888777664 334 455666788999999999999999999853
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.11 Score=49.93 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
....++.+.+.|++++-... ..|......+.++.+++.. ++||++ |++.+++++..+.+.|+|++.++
T Consensus 133 d~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 133 DPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 34667788888999984411 1122222367788888874 789888 68999999999999999999875
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.36 Score=45.80 Aligned_cols=119 Identities=20% Similarity=0.226 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCC---ceEEEc-ccCCHH----HHHHHHHcCCCEEEE
Q 010640 250 KERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPE---LDVIGG-NVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~---~~Vi~g-~V~t~e----~a~~l~~aGad~I~v 316 (505)
...++.+++.|+|-+-+... .|+...+.+.++.+++..++ +.||+- ...+.+ ..+.+.++|+|+|+-
T Consensus 80 ~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKT 159 (228)
T COG0274 80 AAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKT 159 (228)
T ss_pred HHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEc
Confidence 44566788889888744332 24456677888888887743 234442 223333 335567799999988
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
|.|-. . +.-|+..+....+.. ...+.|=++|||+|..|+.+.+.+||+-++.
T Consensus 160 STGf~-------~---~gAT~edv~lM~~~v-g~~vgvKaSGGIrt~eda~~~i~aga~RiGt 211 (228)
T COG0274 160 STGFS-------A---GGATVEDVKLMKETV-GGRVGVKASGGIRTAEDAKAMIEAGATRIGT 211 (228)
T ss_pred CCCCC-------C---CCCCHHHHHHHHHHh-ccCceeeccCCcCCHHHHHHHHHHhHHHhcc
Confidence 74321 0 113444443334433 2358999999999999999999999654433
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.052 Score=52.50 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|+|.+.+. ..+ ..+. .+....+..+. +...+|+..+|||++.+|+.+++.+||+-|.
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~--------~~~~-~~n~~~i~~i~---~~~~~~v~vgGGir~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDA--------IMGR-GDNDEAIRELA---AAWPLGLWVDGGIRSLENAQEWLKRGASRVI 105 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCcc--------ccCC-CccHHHHHHHH---HhCCCCEEEecCcCCHHHHHHHHHcCCCeEE
Confidence 467788888999988663 211 0111 13444454443 4457999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+||....
T Consensus 106 igt~~~~ 112 (233)
T cd04723 106 VGTETLP 112 (233)
T ss_pred Ecceecc
Confidence 9997543
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.81 Score=45.04 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCccEEEE---eCCCCC----chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVL---DSSQGN----SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i---~~~~g~----~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-+ ....|. .....+.++.+|+.. +.|+.+| ++.+.++++.+.++|+|+++||
T Consensus 156 ~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 156 SKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred CHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 346666666653323322 222232 245677888888865 8898885 7888999999999999999986
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.12 Score=50.07 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
.+..+.++.+.++|+|.++++.........++.++.++ .++||+. |++.+.+++.+++..|+|++.++-
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcC
Confidence 45778888899999999877543221122356666665 3788877 899999999999999999998874
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.28 Score=48.16 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCccEE-EEeC-------CCCC-chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVV-VLDS-------SQGN-SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I-~i~~-------~~g~-~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
..++++.+.++|+-.+ +++. ..|. ..+..+.++.+++.. ++|||.. -.....+++.+.++|+|.|+..
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT- 94 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-SIPVMAKVRIGHFVEAQILEALGVDMIDES- 94 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-CCCeEEeeehhHHHHHHHHHHcCCCEEecc-
Confidence 3467777778886554 3322 2221 234578888999987 8999874 3345889999999999999521
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
.+ -.|.-+.+. ....++++|+++ ++.|-.+...|..+|||+|
T Consensus 95 -------~r-----~rP~~~~~~---~iK~~~~~l~MA--D~stleEal~a~~~Gad~I 136 (283)
T cd04727 95 -------EV-----LTPADEEHH---IDKHKFKVPFVC--GARNLGEALRRISEGAAMI 136 (283)
T ss_pred -------CC-----CCcHHHHHH---HHHHHcCCcEEc--cCCCHHHHHHHHHCCCCEE
Confidence 11 113111222 222335899999 9999999999999999976
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.73 Score=46.10 Aligned_cols=129 Identities=19% Similarity=0.289 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEEE------c--------cc-CCHHHHHHHHHcCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVIG------G--------NV-VTMYQAQNLIEAGV 311 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi~------g--------~V-~t~e~a~~l~~aGa 311 (505)
..+.++.+++.|.+.+-++.++-.....++..+++++... ++++-+ | +. .++++|..+.+.|+
T Consensus 88 ~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgv 167 (293)
T PRK07315 88 HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGI 167 (293)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCC
Confidence 3567888899999999998877655555666666655321 333211 1 12 68999999999999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCC--CCCHHHHHHHHHhCCCEEEeccccc
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGG--ISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GG--I~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|++-+++|.-...+......++ +..|.++++ .. ++|+++=|| | +..++.+++..|++-|-++|.+.
T Consensus 168 D~LAv~iG~vHG~y~t~~k~l~---~e~L~~i~~---~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~ 236 (293)
T PRK07315 168 DFLAAGIGNIHGPYPENWEGLD---LDHLEKLTE---AVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQ 236 (293)
T ss_pred CEEeeccccccccCCCCCCcCC---HHHHHHHHH---hccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHH
Confidence 9998886543211111111222 334444444 34 499999988 5 45779999999999999999875
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.22 Score=49.34 Aligned_cols=90 Identities=16% Similarity=0.171 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 275 FQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 275 ~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
.+.+.++.+|+..| ..+|.+ +|.|.+++..+.++|+|.|.+.+ . .++.+.++....+. ...
T Consensus 178 ~i~~av~~~r~~~~~~~kIeV-Ev~slee~~ea~~~gaDiImLDn-------------~---s~e~l~~av~~~~~-~~~ 239 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEV-EVDRLDQIEPVLAAGVDTIMLDN-------------F---SLDDLREGVELVDG-RAI 239 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEE-EeCCHHHHHHHHhcCCCEEEECC-------------C---CHHHHHHHHHHhCC-CeE
Confidence 46788888888876 356666 89999999999999999997653 1 23334444444432 467
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+.++||| |...+.+.-..|+|.+.+|.+.
T Consensus 240 leaSGgI-~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 240 VEASGNV-NLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred EEEECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 8888886 7888888889999999999865
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.21 Score=49.57 Aligned_cols=89 Identities=13% Similarity=0.138 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
..+.++.+++..+..+|.+ +|.|.+++..+.++|+|.|.+.+ + +++.+.++.+..+. ++.+-
T Consensus 192 i~~av~~~r~~~~~~kIeV-Evetleea~eA~~aGaDiImLDn-------------m---spe~l~~av~~~~~-~~~lE 253 (294)
T PRK06978 192 VGAALDAAFALNAGVPVQI-EVETLAQLETALAHGAQSVLLDN-------------F---TLDMMREAVRVTAG-RAVLE 253 (294)
T ss_pred HHHHHHHHHHhCCCCcEEE-EcCCHHHHHHHHHcCCCEEEECC-------------C---CHHHHHHHHHhhcC-CeEEE
Confidence 4566777776544455555 88999999999999999997653 1 23334444444432 57788
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++||| |...+.+.-..|.|.+.+|...
T Consensus 254 aSGGI-t~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 254 VSGGV-NFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred EECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 88886 6888888889999999999865
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.59 Score=46.50 Aligned_cols=129 Identities=17% Similarity=0.213 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEE-----Ec-----------ccCCHHHHHHHHH-c
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVI-----GG-----------NVVTMYQAQNLIE-A 309 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi-----~g-----------~V~t~e~a~~l~~-a 309 (505)
..+.++.+++.|++.+-++.++-.....++..+.+++... ++++- +| ...+++++..+.+ .
T Consensus 86 ~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~t 165 (281)
T PRK06806 86 TFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEET 165 (281)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhh
Confidence 4578888999999999998876544555555555554331 33331 12 1358899998874 6
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC--CCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG--GISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
|+|++-+++|+-.... . +...=.+..|.++++ ..++|+++=| || +..++.+++..|++.|-+.|.+..
T Consensus 166 g~DyLAvaiG~~hg~~--~--~~~~l~~~~L~~i~~---~~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~ 235 (281)
T PRK06806 166 DVDALAVAIGNAHGMY--N--GDPNLRFDRLQEIND---VVHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFN 235 (281)
T ss_pred CCCEEEEccCCCCCCC--C--CCCccCHHHHHHHHH---hcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHH
Confidence 9999988654322111 1 110112445555544 4579999999 76 567899999999999999998753
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.11 Score=51.13 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 275 FQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
...+.++.+++.. ++||+++ .+....+|+.|.++|+|+|+-+- + . .| +..+ .....+++++|
T Consensus 61 ~~p~~I~aIk~~V-~iPVigk~Righ~~Ea~~L~~~GvDiID~Te--------~-l----rp-ad~~--~~~~K~~f~~~ 123 (293)
T PRK04180 61 ADPKMIEEIMDAV-SIPVMAKARIGHFVEAQILEALGVDYIDESE--------V-L----TP-ADEE--YHIDKWDFTVP 123 (293)
T ss_pred CCHHHHHHHHHhC-CCCeEEeehhhHHHHHHHHHHcCCCEEeccC--------C-C----Cc-hHHH--HHHHHHHcCCC
Confidence 3457778888887 8999885 44568999999999999996321 0 1 13 1111 22223345899
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 354 VIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
+++ |++|-.+...+..+|||+|.
T Consensus 124 fma--d~~~l~EAlrai~~GadmI~ 146 (293)
T PRK04180 124 FVC--GARNLGEALRRIAEGAAMIR 146 (293)
T ss_pred EEc--cCCCHHHHHHHHHCCCCeee
Confidence 999 99999999999999998764
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.25 Score=49.83 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCccEEEEeCC--CCCc--hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSS--QGNS--SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~--~g~~--~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|.|+++.. .|+. ...+..++.+++.. ++||++ |++.+.+++..+...|+|++.++
T Consensus 119 ~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 119 VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 35677788899999999763 2332 23678888888876 688876 89999999999999999999886
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.032 Score=55.45 Aligned_cols=166 Identities=12% Similarity=0.110 Sum_probs=102.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc--------------hhHHHHHHHHHHhCCCceEEEcccCC----HHHHHHHHHc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS--------------SFQIEMIKYAKKTYPELDVIGGNVVT----MYQAQNLIEA 309 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~--------------~~~~~~i~~l~~~~~~~~Vi~g~V~t----~e~a~~l~~a 309 (505)
.+.+....-.++|+|.++++.++.|. .-.-+.-.|++... .+|++.+...+ .+-|+.....
T Consensus 219 ~w~el~d~~eqag~d~lE~nlscphgm~ergmgla~gq~p~v~~EvC~Wi~A~~-~Ip~~~kmTPNitd~revar~~~~~ 297 (471)
T KOG1799|consen 219 CWMELNDSGEQAGQDDLETNLSCPHGMCERGMGLALGQCPIVDCEVCGWINAKA-TIPMVSKMTPNITDKREVARSVNPV 297 (471)
T ss_pred hHHHHhhhHHhhcccchhccCCCCCCCccccccceeccChhhhHHHhhhhhhcc-ccccccccCCCcccccccchhcCcc
Confidence 46666777778899999887654221 12233444555543 56766653322 2345555556
Q ss_pred CCCEEEEcc------C--C--c--ceeecc--cccccCc----C-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 310 GVDGLRVGM------G--S--G--SICTTQ--EVCAVGR----G-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 310 Gad~I~v~~------g--~--g--~~~~~~--~~~g~g~----p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
|+.+|-.-+ | . - .+|.+. ...|... | .+..+..+++..+ ..|+.+-|||-++.|.+..+
T Consensus 298 g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~--~F~l~~~GGvEt~~~~~~Fi 375 (471)
T KOG1799|consen 298 GCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK--EFSLSGIGGVETGYDAAEFI 375 (471)
T ss_pred cccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh--cCccccccCcccccchhhHh
Confidence 666653211 0 0 0 011100 0111111 2 2234444455444 47899999999999999999
Q ss_pred HhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHH
Q 010640 371 VLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPY 450 (505)
Q Consensus 371 ~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (505)
.+|++.||+.+.... .| +..+..
T Consensus 376 l~Gs~~vQVCt~V~~----------------------------------------------~~-----------~~~V~~ 398 (471)
T KOG1799|consen 376 LLGSNTVQVCTGVMM----------------------------------------------HG-----------YGHVKT 398 (471)
T ss_pred hcCCcHhhhhhHHHh----------------------------------------------cC-----------cchHHH
Confidence 999999999986531 01 234568
Q ss_pred HHHHHHHHhhccCCCCHHHHHHh
Q 010640 451 TMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 451 l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+..+|+..|.+.|..+|++++..
T Consensus 399 ~Ca~LK~~m~~~~~~ti~~~~G~ 421 (471)
T KOG1799|consen 399 LCAELKDFMKQHNFSTIEEFRGH 421 (471)
T ss_pred HHHHHHHHHHHcCchhhhhccCc
Confidence 99999999999999999999854
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.14 Score=49.26 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
....++.+.+.|++++-... ..|......+.++.+++.. ++||++ +++.+++++..+.+.|+|++.++
T Consensus 133 d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~-~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 133 DPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 34667788888999984311 1122222266788888874 789888 78999999999999999999875
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.7 Score=46.01 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC--CCceE--EEcc-----------------cCCHHHHHHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY--PELDV--IGGN-----------------VVTMYQAQNLI 307 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~--~~~~V--i~g~-----------------V~t~e~a~~l~ 307 (505)
..+.++.+++.|.+.+-++.++-.....++..+++.+.. .+++| -+|. ..++++++.+.
T Consensus 86 ~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~ 165 (286)
T PRK06801 86 HFEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFV 165 (286)
T ss_pred CHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHH
Confidence 457788899999999999877643334444444443322 13433 1111 23568888888
Q ss_pred -HcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCC--CCCHHHHHHHHHhCCCEEEeccccc
Q 010640 308 -EAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG--ISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 308 -~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GG--I~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.|+|++-+++|....-+.. ...+ .+..+.++++ ..++|+++-|| |. ..++.+++.+|++-|-++|.+.
T Consensus 166 ~~tgvD~LAvaiGt~Hg~y~~-~~~l---~~e~l~~i~~---~~~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~ 237 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGKYKG-EPKL---DFARLAAIHQ---QTGLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMS 237 (286)
T ss_pred HHHCcCEEEeccCCCCCCCCC-CCCC---CHHHHHHHHH---hcCCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHH
Confidence 79999999876543222110 1111 3444544443 35699999998 65 5789999999999999999874
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.66 Score=44.35 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=84.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.+..+.+.+..++ |-.+.- ..-+..++.+++. ++++-+..|.|...|..+..+|+++|.. ..
T Consensus 65 ~e~mi~ea~~l~~~~~ni~-IKIP~T--~~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp-------yv 132 (220)
T PRK12653 65 AEGMVNDARKLRSIIADIV-VKVPVT--AEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAP-------YV 132 (220)
T ss_pred HHHHHHHHHHHHHhCCCEE-EEeCCC--HHHHHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEe-------ec
Confidence 3445566666666665543 322211 1226677777776 7888887889999999999999998843 22
Q ss_pred cccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| ...+|...+..+.++.+..+.. +..|++ ..+++..++.+++.+||+.+-+....+
T Consensus 133 gR-~~~~g~dg~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12653 133 NR-IDAQGGSGIQTVTDLQQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_pred Ch-HhhcCCChHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 23 2334555566666666666543 233444 689999999999999999999886543
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.071 Score=55.46 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=49.5
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
+.+.+..+.++|+|+|.+.... +++......+.++++..+ +++||+ |+|.|..+...++.+|||+|.
T Consensus 154 ~~~~v~~lv~aGvDvI~iD~a~----------g~~~~~~~~v~~ik~~~p--~~~vi~-g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 154 TIERVEELVKAHVDILVIDSAH----------GHSTRIIELVKKIKTKYP--NLDLIA-GNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred HHHHHHHHHhcCCCEEEEECCC----------CCChhHHHHHHHHHhhCC--CCcEEE-EecCCHHHHHHHHHcCCCEEE
Confidence 4478999999999999875211 223333444545544322 466666 899999999999999999998
Q ss_pred ec
Q 010640 379 MG 380 (505)
Q Consensus 379 ~G 380 (505)
+|
T Consensus 221 vG 222 (404)
T PRK06843 221 VG 222 (404)
T ss_pred EC
Confidence 77
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.28 Score=46.33 Aligned_cols=70 Identities=24% Similarity=0.269 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++....+......|.+.+.+....|.. ....+.++.+++.. ++|+++ |++.+.++++.+.++|+|.+++|
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 334455555666799999886644432 23467888888887 788877 57889999999999999999874
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.29 Score=47.57 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=73.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhC--CCceEEEc------cc-----CC----HHHHHHHHHcCC
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTY--PELDVIGG------NV-----VT----MYQAQNLIEAGV 311 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~--~~~~Vi~g------~V-----~t----~e~a~~l~~aGa 311 (505)
...+.++..|+|++.++...|.. ...++.+..+.+.. -+.|+++. .+ .+ ...++...+.|+
T Consensus 101 ~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGA 180 (265)
T COG1830 101 ATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGA 180 (265)
T ss_pred eeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcC
Confidence 34667788999999887765532 33444444443322 16777762 12 22 234568889999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HH-----HHHHHHHhCCCEEEecccc
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SG-----HIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~-----di~kal~lGA~~V~~G~~f 383 (505)
|+|++.- + ...+.+.++...| ++||+.+||=.+ .. -+..++..||.++.+|+-.
T Consensus 181 DIiK~~y-------t--------g~~e~F~~vv~~~---~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNi 240 (265)
T COG1830 181 DIIKTKY-------T--------GDPESFRRVVAAC---GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNI 240 (265)
T ss_pred CeEeecC-------C--------CChHHHHHHHHhC---CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhh
Confidence 9998741 1 1124455555554 489999999887 22 2445678999999999864
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.035 Score=55.15 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=65.9
Q ss_pred CCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCC
Q 010640 121 GCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDV 197 (505)
Q Consensus 121 ~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i 197 (505)
..-..+.+.+.. +. +.+++. .++.+|+|+..++.. ..+.+ .+.++..++++.+.+..+.+...
T Consensus 293 ~~~~~al~~~~~~~~~~~~~~~~---~~~~~g~v~~~~~~~---------~~~~~--~~~~v~~d~~~~~~~~~~~~~~~ 358 (386)
T COG4175 293 DGPRVALKLLRDEGREYGYAVDR---GNKFVGVVSIDSLVK---------AALID--DVLTVDADTPLSEILARIRQAPC 358 (386)
T ss_pred cccchhhhhhhhccchhhHHHhc---cCceeeEEeccchhc---------ccccc--cccccCccchHHHHHHHHhcCCC
Confidence 344456666666 43 444554 788999999888732 13444 77888999999999998888766
Q ss_pred CeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 198 DFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 198 ~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.+||+|+ ++++|+|++..++.++.
T Consensus 359 -p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 359 -PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred -ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 5899999 99999999999998864
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.12 Score=50.31 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|+|.+.+. .-+. ..+. ......+.++.+. . .|+..+|||++-+|+.+++.+||+-|.
T Consensus 33 ~~~A~~~~~~ga~~lhivDLd~a-------~~g~-~~n~~~i~~i~~~---~-~~v~vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 33 AELVEKLIEEGFTLIHVVDLSKA-------IENS-VENLPVLEKLSEF---A-EHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc-------ccCC-cchHHHHHHHHhh---c-CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 355777888999988653 2110 1111 1234455555443 3 699999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+||..+.
T Consensus 101 igT~a~~ 107 (241)
T PRK14114 101 VSSKVLE 107 (241)
T ss_pred ECchhhC
Confidence 9997543
|
|
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.074 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=29.4
Q ss_pred CCcE--EecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 351 GVPV--IADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 351 ~ipv--Ia~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++|| +++||+.||.|.+-.+.||+|+|.+|+-.
T Consensus 207 rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgi 241 (296)
T KOG1606|consen 207 RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGI 241 (296)
T ss_pred CCceEEecccCcCChhHHHHHHHcCCCeEEecccc
Confidence 4777 47899999999999999999999999764
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.18 Score=57.39 Aligned_cols=120 Identities=19% Similarity=0.297 Sum_probs=70.8
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHH----Hc---CCCEEEEccCCccee
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLI----EA---GVDGLRVGMGSGSIC 324 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~----~a---Gad~I~v~~g~g~~~ 324 (505)
.+.+.+.|+| +++ ..... . +...|+..+ +..|.+ .+.+.+++..+. .+ |+|++.+|- +.
T Consensus 72 ~~la~~~~~d-VHl--g~~dl--~---~~~~r~~~~~~~~iG~-S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gp----vf 138 (755)
T PRK09517 72 LDVAVELGLH-VHI--GQGDT--P---YTQARRLLPAHLELGL-TIETLDQLEAVIAQCAETGVALPDVIGIGP----VA 138 (755)
T ss_pred HHHHHHcCCC-eec--CCCcC--C---HHHHHHhcCCCCEEEE-eCCCHHHHHHHHhhhccCCCCCCCEEEECC----cc
Confidence 5556677888 544 43321 1 223344432 333333 667887765542 23 499998761 22
Q ss_pred ecccccccC-cChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 325 TTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 325 ~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.|....+.. .-.+..+..+++.++...+||++-||| +..++..++..||++|.+-+.+..+
T Consensus 139 ~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~a 200 (755)
T PRK09517 139 STATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMAA 200 (755)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhCC
Confidence 221111111 012344555555443334999999999 9999999999999999999888654
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.3 Score=42.34 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=84.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.+..+.+.+.++ .|-.+.- ..-+..++.+++. ++++-+..+.|...|..+..+|+++|.. ..
T Consensus 65 ~e~mi~eA~~l~~~~~nv-~IKIP~T--~~Gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIsp-------yv 132 (220)
T PRK12655 65 AQGMVEEAKRLRNAIPGI-VVKIPVT--AEGLAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYVAP-------YV 132 (220)
T ss_pred HHHHHHHHHHHHHhCCCE-EEEeCCC--HHHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEEEe-------ec
Confidence 344556666666665553 3322211 1226677777776 7888887889999999999999998743 22
Q ss_pred cccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+|. ...|......+.++.+..+.+ +..|++ ..+++..++.+++.+||+.+-+....+
T Consensus 133 gR~-~~~g~dg~~~i~~~~~~~~~~~~~tkILa-AS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12655 133 NRV-DAQGGDGIRMVQELQTLLEMHAPESMVLA-ASFKTPRQALDCLLAGCQSITLPLDVA 191 (220)
T ss_pred chH-hHcCCCHHHHHHHHHHHHHhcCCCcEEEE-EecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 232 234455566677777766554 344444 689999999999999999999886543
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.43 Score=45.40 Aligned_cols=114 Identities=19% Similarity=0.176 Sum_probs=66.0
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE----ccc---CC-HHH----HHHHHHcCCCEEEEcc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG----GNV---VT-MYQ----AQNLIEAGVDGLRVGM 318 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~----g~V---~t-~e~----a~~l~~aGad~I~v~~ 318 (505)
..++.+.+.|+|.+.+|...| .......++.+++. +.++++ .++ .. .+. ++...+.|+++....
T Consensus 71 ~~~~~~~~~gad~vtvh~e~g-~~~l~~~i~~~~~~--g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~- 146 (215)
T PRK13813 71 LICEAVFEAGAWGIIVHGFTG-RDSLKAVVEAAAES--GGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAP- 146 (215)
T ss_pred HHHHHHHhCCCCEEEEcCcCC-HHHHHHHHHHHHhc--CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEC-
Confidence 344778889999999988755 22344556666654 555533 111 11 111 223334666655332
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHH-HHHHHHHhCCCEEEecccccC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG-HIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~-di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.+.-+.++++.... ++ .+.+|||.... ++..++.+||+.+.+|+.+..
T Consensus 147 ---------------~~~~~~i~~l~~~~~~-~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~ 197 (215)
T PRK13813 147 ---------------ATRPERVRYIRSRLGD-EL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYN 197 (215)
T ss_pred ---------------CCcchhHHHHHHhcCC-Cc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCC
Confidence 1112223334333321 22 34889999763 688899999999999998643
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.5 Score=46.59 Aligned_cols=131 Identities=18% Similarity=0.223 Sum_probs=81.8
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.|++.+-..++..+.++.|-.-|...+++ -.| +...+..+-.|.+..|..||+.. .-
T Consensus 127 vvIsAGIP~le~A~ElI~~L~~~G~~yv~f--KPG-tIeqI~svi~IAka~P~~pIilq-------------------~e 184 (717)
T COG4981 127 VVISAGIPSLEEAVELIEELGDDGFPYVAF--KPG-TIEQIRSVIRIAKANPTFPIILQ-------------------WE 184 (717)
T ss_pred EEEecCCCcHHHHHHHHHHHhhcCceeEEe--cCC-cHHHHHHHHHHHhcCCCCceEEE-------------------Ee
Confidence 445566644455666666666678888877 222 33444555556666678888661 11
Q ss_pred cc-CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-----------hCCCEEEeccccc
Q 010640 317 GM-GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-----------LGASTVMMGSFLA 384 (505)
Q Consensus 317 ~~-g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-----------lGA~~V~~G~~f~ 384 (505)
+. +||.+++. .+ .-+.+.+-.+++ +..++-++..|||.++.|.+..|. +--|++.+||+..
T Consensus 185 gGraGGHHSwe-Dl---d~llL~tYs~lR---~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaM 257 (717)
T COG4981 185 GGRAGGHHSWE-DL---DDLLLATYSELR---SRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAM 257 (717)
T ss_pred cCccCCccchh-hc---ccHHHHHHHHHh---cCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHH
Confidence 22 23333332 22 224444443333 234689999999999999887652 3468999999999
Q ss_pred CCCCCCccceee
Q 010640 385 GSTEAPGAYVYQ 396 (505)
Q Consensus 385 ~~~Es~~~~~~~ 396 (505)
.++|+.+...-|
T Consensus 258 atKEatTSp~vK 269 (717)
T COG4981 258 ATKEATTSPAVK 269 (717)
T ss_pred hhhhccCCHHHH
Confidence 999998776554
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.25 Score=52.30 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=81.0
Q ss_pred CcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC----CHHHHHHHHHcC
Q 010640 235 GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV----TMYQAQNLIEAG 310 (505)
Q Consensus 235 ~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~----t~e~a~~l~~aG 310 (505)
.+++++.+....++..+.++.+++.|++++++..+. ......+.++.+++.++. +.++..+. -...+..+.++|
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~-~~~~~~~~i~~l~~~~~~-~~ii~D~kl~d~g~~~v~~a~~aG 81 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPL-IKSEGMNAIRTLRKNFPD-HTIVADMKTMDTGAIEVEMAAKAG 81 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHH-HHHhhHHHHHHHHHHCCC-CEEEEEeeeccchHHHHHHHHHcC
Confidence 457777777667778888888899999999874211 112235677777777633 33332211 123788899999
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-CCCCCH-HHHHHHHHhCCCEEEecccc
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-GGISNS-GHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-GGI~~~-~di~kal~lGA~~V~~G~~f 383 (505)
+|++.+-. .+....+.++.+.+++.+++++.. -...+. ..+.++..+|+|.+.++..|
T Consensus 82 AdgV~v~g---------------~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~ 141 (430)
T PRK07028 82 ADIVCILG---------------LADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHVGI 141 (430)
T ss_pred CCEEEEec---------------CCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEecc
Confidence 99986420 011111234455566677888761 133332 33567778999999877544
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.6 Score=44.59 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE---ccc--------CCHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG---GNV--------VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~---g~V--------~t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+.++|+.++.+ + ..+.++.+++.. ++|++. ... .+.+.++.+.++|+|+|.+
T Consensus 28 ~i~~~a~~~~~~G~~~~~~----~----~~~~~~~i~~~~-~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~ 98 (219)
T cd04729 28 IMAAMALAAVQGGAVGIRA----N----GVEDIRAIRARV-DLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIAL 98 (219)
T ss_pred HHHHHHHHHHHCCCeEEEc----C----CHHHHHHHHHhC-CCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEE
Confidence 4567788888999988764 1 235566666653 677752 221 1356889999999998866
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..... ..|.-..+.++.+.+++.+ +|++. ++.+..++..+..+|++.+.+.
T Consensus 99 ~~~~~-----------~~p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 99 DATDR-----------PRPDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred eCCCC-----------CCCCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 42100 0111011223333333344 88888 8999999999999999998653
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.83 Score=46.48 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCc-cEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-cCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGV-NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-VVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGa-d~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
..+.+..+.++|. -++. .. .......+.+++++..+ .+...++. ....+.+..+.++|+++|.+....|
T Consensus 47 ~~~ma~ava~~GglGvi~--~~-~~~~~~~~~i~~vk~~l-~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G----- 117 (325)
T cd00381 47 ESEMAIAMARLGGIGVIH--RN-MSIEEQAEEVRKVKGRL-LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHG----- 117 (325)
T ss_pred cHHHHHHHHHCCCEEEEe--CC-CCHHHHHHHHHHhccCc-eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCC-----
Confidence 3455666667764 4442 22 22233444555444332 22222221 1235678889999999998753211
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
........+..+++... ++||++ |.+.+..++.+++.+|||++.+|
T Consensus 118 -----~~~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 118 -----HSVYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred -----CcHHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 11112233333333221 388888 99999999999999999999884
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.081 Score=55.01 Aligned_cols=70 Identities=4% Similarity=0.070 Sum_probs=53.7
Q ss_pred EEEeccccccccc--cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 149 GYVTKSDWENLSD--NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 149 Givt~~Dl~~~~~--~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
|+++..+...... ....+.+ +.. ...++++++++.+++..+.+.+.. +||+|+|+++|+|++.+++.++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 309 QVRRRDAKLPVQAWAAEQEVES-LEA--APTVINPDTLMRDVLAARHRTGGA-ILLVENGRIVGVIGDDNIYHALL 380 (382)
T ss_pred ceecccchHhHhhcccccchhh-hcc--cCcccCCCCcHHHHHHHHhcCCCC-eEEeeCCeEEEEEeHHHHHHHHh
Confidence 7787766542111 2334666 444 788899999999999998887764 88998899999999999998763
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=2 Score=42.75 Aligned_cols=130 Identities=20% Similarity=0.320 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceE------EEc---c---------cCCHHHHHHHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDV------IGG---N---------VVTMYQAQNLIE 308 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~V------i~g---~---------V~t~e~a~~l~~ 308 (505)
..+.++.+++.|.+-+.+|.++-.....++..+++.+... +++| +.+ . ..++++|..+.+
T Consensus 80 ~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~ 159 (283)
T PRK08185 80 TIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVS 159 (283)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHH
Confidence 4677888899999999999877544445555555543221 3322 111 0 347889988887
Q ss_pred c-CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HHHHHHHHHhCCCEEEecccc
Q 010640 309 A-GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 309 a-Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~di~kal~lGA~~V~~G~~f 383 (505)
. |+|++-+++|.....+.... ...+ .+..+.++++ ..++|+++=||... ..++.+|..+|..=|=++|-+
T Consensus 160 ~TgvD~LAvaiGt~HG~y~~~~-kp~L-~~e~l~~I~~---~~~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l 231 (283)
T PRK08185 160 RTGVDTLAVAIGTAHGIYPKDK-KPEL-QMDLLKEINE---RVDIPLVLHGGSANPDAEIAESVQLGVGKINISSDM 231 (283)
T ss_pred hhCCCEEEeccCcccCCcCCCC-CCCc-CHHHHHHHHH---hhCCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHH
Confidence 6 99999998654332221100 0011 2445555544 45799999999854 567788999999999999876
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.7 Score=40.16 Aligned_cols=121 Identities=21% Similarity=0.264 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-ccCCccee
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSIC 324 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~ 324 (505)
...++++.+..+|++.+.+|...-. .+.+.++.+|+. +..+ .++.-+..+....+.+ -+|.+-| ...+|
T Consensus 75 ~Peq~V~~~a~agas~~tfH~E~~q--~~~~lv~~ir~~--Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePG--- 146 (224)
T KOG3111|consen 75 NPEQWVDQMAKAGASLFTFHYEATQ--KPAELVEKIREK--GMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPG--- 146 (224)
T ss_pred CHHHHHHHHHhcCcceEEEEEeecc--CHHHHHHHHHHc--CCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCC---
Confidence 3567888899999999999874322 356788888887 4443 3344456666655544 4666644 33322
Q ss_pred ecccccccC-cC-hHHHHHHHHHHHhhcCCcEE-ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 325 TTQEVCAVG-RG-QATAVYKVSSIAAQSGVPVI-ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g-~p-~~~~l~~v~~~~~~~~ipvI-a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+| .. +.+.+.-+...+.++.-+.| .|||+ ++..+-++..+||++...||...
T Consensus 147 -------FGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf 201 (224)
T KOG3111|consen 147 -------FGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVF 201 (224)
T ss_pred -------CchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHHcCCCEEEecceee
Confidence 21 11 12334444444445544455 88996 56789999999999999999753
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.24 Score=49.75 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=57.0
Q ss_pred ceEEEeecC-CccHHHHHHHHHHcCccEEEEeCCC-------------------CCc-h----hHHHHHHHHHHhCCCce
Q 010640 237 WMVGAAIGT-RESDKERLEHLVKAGVNVVVLDSSQ-------------------GNS-S----FQIEMIKYAKKTYPELD 291 (505)
Q Consensus 237 l~v~a~i~~-~~~~~e~~~~lieaGad~I~i~~~~-------------------g~~-~----~~~~~i~~l~~~~~~~~ 291 (505)
+.+.+.+.. .++..+.++.+.++|+|.++++.+. |.+ . ..++.+..+++.. ++|
T Consensus 158 ~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-~ip 236 (300)
T TIGR01037 158 VPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-DIP 236 (300)
T ss_pred CCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-CCC
Confidence 345555542 2346677888889999999885321 111 0 1246777787776 688
Q ss_pred EEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 292 VIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 292 Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|+. |++.+.+++.+++.+|||++.++
T Consensus 237 vi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 237 IIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred EEEECCCCCHHHHHHHHHcCCCceeec
Confidence 875 89999999999999999999775
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=2 Score=41.54 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHHcCccEEE-EeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHc----CCCEEEEccCCc
Q 010640 247 ESDKERLEHLVKAGVNVVV-LDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEA----GVDGLRVGMGSG 321 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~-i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~a----Gad~I~v~~g~g 321 (505)
++..+.+..+.+.+.++++ +-.+......-+..++.+.+. ++++-+.-+.|...+..+..+ |++++.
T Consensus 71 ~~mv~eA~~l~~~~~nv~VKIP~T~~~G~~gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yis------ 142 (236)
T PRK12376 71 ETMEKEAEKIASLGENVYVKIPITNTKGESTIPLIKKLSAD--GVKLNVTAIFTIEQVKEVVDALTPGVPAIVS------ 142 (236)
T ss_pred HHHHHHHHHHHHhCCCeEEEECCcCccchhHHHHHHHHHHC--CCeEEEeeecCHHHHHHHHHHhcCCCCeEEE------
Confidence 4455666667666665442 322210111235667777776 788877778899999766555 577773
Q ss_pred ceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 322 SICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 322 ~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+..+|. .+.|......+.++.+..+.+ +..|++ ..+++..++.+++.+||+.+-++.-+
T Consensus 143 -pfvgR~-dd~g~D~~~~i~~i~~i~~~~~~tkILa-ASiR~~~~v~~a~~~Gad~vTvp~~v 202 (236)
T PRK12376 143 -VFAGRI-ADTGVDPVPLMKEALAICHSKPGVELLW-ASPREVYNIIQADQLGCDIITVTPDV 202 (236)
T ss_pred -Eecchh-hhcCCCcHHHHHHHHHHHHhCCCcEEEE-EecCCHHHHHHHHHcCCCEEEcCHHH
Confidence 233332 234555566666666665443 455665 58999999999999999999988554
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.28 Score=49.31 Aligned_cols=212 Identities=15% Similarity=0.073 Sum_probs=122.6
Q ss_pred HHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhh------HHHHHHHHHHcCCeeEEcC-
Q 010640 15 DRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT------EDYMAAAMAALGGIGIVHS- 87 (505)
Q Consensus 15 ~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt------~~~ma~al~~~Gg~g~i~~- 87 (505)
+.-|..| ...|+++.++|.. ....+++|+.+++. +.++..|++.++|+..+ +..++.+..+.|..+.+..
T Consensus 26 ~~~~~~n-~~~~~~i~~~~~~-l~~~~~id~~~~~l-g~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~ 102 (299)
T cd02809 26 EVTLRRN-RAAFDRIRLRPRV-LRDVSKRDTSTTLL-GQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTV 102 (299)
T ss_pred HHHHHHH-HHHHHhceeeccc-CCCCCCCCCceEEC-CeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCC
Confidence 3345555 4569999999955 22345889999997 77889999999996543 4677888888888776653
Q ss_pred -CCCHHHHHHHHHhhhccCCccccCCCeeEeCCC---CCHHHHHHHhcC-Ce-EEEEeCCCCCCeEEEEEeccccccccc
Q 010640 88 -NCTAADQARLVVSAKSRRVPIFSSSLDVFKAPD---GCINDANDFDGS-NY-VFVTESGTRRSRILGYVTKSDWENLSD 161 (505)
Q Consensus 88 -~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~---~tv~~a~~~~~~-~~-~pVvd~~~~~g~lvGivt~~Dl~~~~~ 161 (505)
..+.++. ++. .. .|..+.+... ....+.++...+ +. ...++-
T Consensus 103 ~~~~~~~i----~~~---~~----~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~--------------------- 150 (299)
T cd02809 103 STTSLEEV----AAA---AP----GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV--------------------- 150 (299)
T ss_pred CcCCHHHH----HHh---cC----CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec---------------------
Confidence 2333332 111 11 2311222111 223333333333 33 222210
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEE
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGA 241 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a 241 (505)
.. +.. ......+.++.+.+. . .+||+ +
T Consensus 151 ---------~~--p~~---~~~~~~~~i~~l~~~-~-~~pvi-------------------------------------v 177 (299)
T cd02809 151 ---------DT--PVL---GRRLTWDDLAWLRSQ-W-KGPLI-------------------------------------L 177 (299)
T ss_pred ---------CC--CCC---CCCCCHHHHHHHHHh-c-CCCEE-------------------------------------E
Confidence 00 000 000112333333331 0 02332 1
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCc----hhHHHHHHHHHHhCC-CceEEE-cccCCHHHHHHHHHcCCCEEE
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNS----SFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~----~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l~~aGad~I~ 315 (505)
... ...+.+..+.++|+|+|.++...|.. ...++.+..+++.++ ++||++ |++.+..++.+++.+|||++.
T Consensus 178 K~v---~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 178 KGI---LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred eec---CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 110 12356788899999999997644322 245777777877664 588877 899999999999999999998
Q ss_pred Ec
Q 010640 316 VG 317 (505)
Q Consensus 316 v~ 317 (505)
++
T Consensus 255 ig 256 (299)
T cd02809 255 IG 256 (299)
T ss_pred Ec
Confidence 76
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.87 Score=44.52 Aligned_cols=67 Identities=28% Similarity=0.373 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCccE---EEEeCCCCCc----hhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNV---VVLDSSQGNS----SFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~---I~i~~~~g~~----~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.+ +......|.. ..+.+.++++|+.. ++|+.+| ++.++++++++.++ +|+++||
T Consensus 159 ~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 159 PDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred CHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 446666666654222 3333333432 23678889998887 8999998 88999999999999 9999986
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.02 E-value=2 Score=41.13 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=81.2
Q ss_pred CccHHHHHHHHHH-cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 246 RESDKERLEHLVK-AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 246 ~~~~~e~~~~lie-aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
.++..+.+..+.+ .+.+++ +-.+. ...-+..++.+++. ++++-+.-+.|.+.+..+.++|+++|.. .
T Consensus 66 ~~~mi~eA~~l~~~~~~nv~-VKIP~--T~~Gl~Ai~~L~~~--Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsP-------y 133 (222)
T PRK12656 66 YEGILKDAHEIRRQCGDDVY-IKVPV--TPAGLAAIKTLKAE--GYHITATAIYTVFQGLLAIEAGADYLAP-------Y 133 (222)
T ss_pred HHHHHHHHHHHHHHhCCCEE-EEeCC--CHHHHHHHHHHHHC--CCceEEeeeCCHHHHHHHHHCCCCEEec-------c
Confidence 3445566666653 354333 22221 12236677777776 7888887889999999999999998732 2
Q ss_pred ecccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+|. .+.|......+.++.+..+.. +..|++ -.+++..++..+..+||+.+-+...++
T Consensus 134 vgRi-~d~g~D~~~~i~~i~~~~~~~~~~tkILa-AS~r~~~~v~~a~~~G~d~vTvp~~vl 193 (222)
T PRK12656 134 YNRM-ENLNIDSNAVIGQLAEAIDRENSDSKILA-ASFKNVAQVNKAFALGAQAVTAGPDVF 193 (222)
T ss_pred cchh-hhcCCCHHHHHHHHHHHHHhcCCCCEEEE-EecCCHHHHHHHHHcCCCEEecCHHHH
Confidence 2332 223444445555555554433 344444 589999999999999999999986553
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.82 Score=44.62 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCccEEEE---eCCCC----CchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVL---DSSQG----NSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i---~~~~g----~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-+ ....| ......+.++.+|+.. +.|+++| ++.+.++++.+.+.|+|++.|+
T Consensus 143 ~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 143 PTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVT-DKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred CHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcC-CCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 345666666655444433 22222 2345667788888864 8999887 6778999999999999999986
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.95 Score=45.76 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccC---CHHHHHHHHHcC--CCEEEEccCCcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVV---TMYQAQNLIEAG--VDGLRVGMGSGS 322 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~---t~e~a~~l~~aG--ad~I~v~~g~g~ 322 (505)
..+.++.+.+.|.-.+... . ..+.+.+ .+++.-+ .+++.++--. +.+.+..+.++| +|+|.+..
T Consensus 47 n~~LA~~a~~~G~~~i~hK--~-~~E~~~s---fvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~---- 116 (321)
T TIGR01306 47 DEKLAEQLAENGYFYIMHR--F-DEESRIP---FIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEYITIDI---- 116 (321)
T ss_pred hHHHHHHHHHcCCEEEEec--C-CHHHHHH---HHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeC----
Confidence 4566777777776555432 1 2233333 3444322 2344332222 345677888888 79987742
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..|+....+..+..+++ ....|.+..|++.++.++..++.+|||++.+|
T Consensus 117 ------ahg~s~~~~~~i~~i~~---~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 117 ------AHGHSNSVINMIKHIKT---HLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred ------ccCchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 12333344555555544 34567777788999999999999999999877
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.23 Score=48.36 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=49.9
Q ss_pred HHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 301 YQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 301 e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.++...+.|++.+-+. ..+ ..+. .+....+.++. +...+|+..+|||++.+|+.+++.+||+-|.+
T Consensus 35 ~~a~~~~~~g~~~lhivDLd~--------a~g~-~~n~~~i~~i~---~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvi 102 (243)
T TIGR01919 35 SAAKWWEQGGAEWIHLVDLDA--------AFGG-GNNEMMLEEVV---KLLVVVEELSGGRRDDSSLRAALTGGRARVNG 102 (243)
T ss_pred HHHHHHHhCCCeEEEEEECCC--------CCCC-cchHHHHHHHH---HHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEE
Confidence 44555667788766553 110 0111 13344454444 44568999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
||..+.
T Consensus 103 gT~a~~ 108 (243)
T TIGR01919 103 GTAALE 108 (243)
T ss_pred CchhhC
Confidence 998553
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.26 Score=47.62 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|++.+.+. ..+. .+. .+....+.++.+. ...|+..+|||++..|+.+++.+||+-|.
T Consensus 33 ~~~a~~~~~~ga~~lhivDLd~a--------~~~-~~n~~~i~~i~~~---~~~~v~vGGGIrs~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 33 IEIASKLYNEGYTRIHVVDLDAA--------EGV-GNNEMYIKEISKI---GFDWIQVGGGIRDIEKAKRLLSLDVNALV 100 (232)
T ss_pred HHHHHHHHHCCCCEEEEEECCCc--------CCC-cchHHHHHHHHhh---CCCCEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence 356677778899888663 2110 011 1334444444432 22599999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+||..+..
T Consensus 101 igt~a~~~ 108 (232)
T PRK13586 101 FSTIVFTN 108 (232)
T ss_pred ECchhhCC
Confidence 99986544
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.48 Score=47.14 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=62.7
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccC-cChHHHHHHHHHHHhhcCCcEEecC--CCCCHHH
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADG--GISNSGH 365 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~d 365 (505)
.-+++.-++-+.-.|+.+.++|.+++.++..+-+. .....+.| .+.-+.+..+++.++..++||++|. |-.++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~--~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA--SLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH--hCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHH
Confidence 45788889999999999999999999887332221 11222222 2333445555666677789999995 7777777
Q ss_pred H----HHHHHhCCCEEEec
Q 010640 366 I----VKALVLGASTVMMG 380 (505)
Q Consensus 366 i----~kal~lGA~~V~~G 380 (505)
+ .+...+||.++.+=
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 4 45568999999874
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.32 Score=49.51 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC----------------CCch-----hHHHHHHHHHHhCC-CceEE-EcccCCHHHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ----------------GNSS-----FQIEMIKYAKKTYP-ELDVI-GGNVVTMYQAQ 304 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~----------------g~~~-----~~~~~i~~l~~~~~-~~~Vi-~g~V~t~e~a~ 304 (505)
+..+.++.+.++|+|.+.++.+. |.+. ..+++++.+++..+ ++||+ +|+|.|.+++.
T Consensus 217 ~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~ 296 (327)
T cd04738 217 ELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAY 296 (327)
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHH
Confidence 45667788888999999876521 2221 23678888888764 57886 48999999999
Q ss_pred HHHHcCCCEEEEc
Q 010640 305 NLIEAGVDGLRVG 317 (505)
Q Consensus 305 ~l~~aGad~I~v~ 317 (505)
+++.+|||++.++
T Consensus 297 e~l~aGAd~V~vg 309 (327)
T cd04738 297 EKIRAGASLVQLY 309 (327)
T ss_pred HHHHcCCCHHhcc
Confidence 9999999999765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 505 | ||||
| 1b3o_A | 514 | Ternary Complex Of Human Type-Ii Inosine Monophosph | 1e-123 | ||
| 1jcn_A | 514 | Binary Complex Of Human Type-I Inosine Monophosphat | 1e-123 | ||
| 1jr1_A | 514 | Crystal Structure Of Inosine Monophosphate Dehydrog | 1e-122 | ||
| 4af0_B | 556 | Crystal Structure Of Cryptococcal Inosine Monophosp | 1e-114 | ||
| 4af0_A | 556 | Crystal Structure Of Cryptococcal Inosine Monophosp | 1e-114 | ||
| 1vrd_A | 494 | Crystal Structure Of Inosine-5'-Monophosphate Dehyd | 6e-75 | ||
| 3tsb_A | 511 | Crystal Structure Of Inosine-5'-Monophosphate Dehyd | 2e-68 | ||
| 3usb_A | 511 | Crystal Structure Of Bacillus Anthracis Inosine Mon | 2e-63 | ||
| 4fxs_A | 496 | Inosine 5'-Monophosphate Dehydrogenase From Vibrio | 6e-63 | ||
| 1zfj_A | 491 | Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1. | 1e-59 | ||
| 3zfh_A | 510 | Crystal Structure Of Pseudomonas Aeruginosa Inosine | 2e-56 | ||
| 4avf_A | 490 | Crystal Structure Of Pseudomonas Aeruginosa Inosine | 3e-56 | ||
| 2cu0_A | 486 | Crystal Structure Of Inosine-5'-Monophosphate Dehyd | 5e-53 | ||
| 4fez_A | 388 | Inosine 5'-Monophosphate Dehydrogenase From Vibrio | 4e-50 | ||
| 4fo4_A | 366 | Inosine 5'-Monophosphate Dehydrogenase From Vibrio | 3e-49 | ||
| 3ffs_A | 400 | The Crystal Structure Of Cryptosporidium Parvum Ino | 2e-45 | ||
| 1eep_A | 404 | 2.4 A Resolution Crystal Structure Of Borrelia Burg | 9e-45 | ||
| 3khj_A | 361 | C. Parvum Inosine Monophosphate Dehydrogenase Bound | 6e-42 | ||
| 1me8_A | 503 | Inosine Monophosphate Dehydrogenase (Impdh) From Tr | 2e-37 | ||
| 1me7_A | 503 | Inosine Monophosphate Dehydrogenase (Impdh) From Tr | 1e-36 | ||
| 2a7r_A | 366 | Crystal Structure Of Human Guanosine Monophosphate | 1e-28 | ||
| 2bzn_A | 351 | Crystal Structure Of Human Guanosine Monophosphate | 2e-28 | ||
| 2ble_A | 367 | Structure Of Human Guanosine Monophosphate Reductas | 3e-26 | ||
| 3r2g_A | 361 | Crystal Structure Of Inosine 5' Monophosphate Dehyd | 3e-24 | ||
| 1pvn_A | 376 | The Crystal Structure Of The Complex Between Imp De | 5e-24 | ||
| 1lrt_A | 376 | Crystal Structure Of Ternary Complex Of Tritrichomo | 7e-24 | ||
| 1ypf_A | 336 | Crystal Structure Of Guac (Ba5705) From Bacillus An | 2e-22 | ||
| 2a7n_A | 380 | Crystal Structure Of The G81a Mutant Of The Active | 9e-06 | ||
| 1huv_A | 380 | Crystal Structure Of A Soluble Mutant Of The Membra | 9e-06 | ||
| 2qr6_A | 393 | Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE | 3e-04 |
| >pdb|1B3O|A Chain A, Ternary Complex Of Human Type-Ii Inosine Monophosphate Dehydrogenase With 6-Cl-Imp And Selenazole Adenine Dinucleotide Length = 514 | Back alignment and structure |
|
| >pdb|1JCN|A Chain A, Binary Complex Of Human Type-I Inosine Monophosphate Dehydrogenase With 6-Cl-Imp Length = 514 | Back alignment and structure |
|
| >pdb|1JR1|A Chain A, Crystal Structure Of Inosine Monophosphate Dehydrogenase In Complex With Mycophenolic Acid Length = 514 | Back alignment and structure |
|
| >pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556 | Back alignment and structure |
|
| >pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate Dehydrogenase Length = 556 | Back alignment and structure |
|
| >pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494 | Back alignment and structure |
|
| >pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Bacillus Anthracis Str. Ames Length = 511 | Back alignment and structure |
|
| >pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine Monophosphate Dehydrogenase In The Complex With Imp Length = 511 | Back alignment and structure |
|
| >pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae Complexed With Imp And Mycophenolic Acid Length = 496 | Back alignment and structure |
|
| >pdb|1ZFJ|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh; Ec 1.1.1.205) From Streptococcus Pyogenes Length = 491 | Back alignment and structure |
|
| >pdb|3ZFH|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'-monophosphate Dehydrogenase Length = 510 | Back alignment and structure |
|
| >pdb|4AVF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Inosine 5'- Monophosphate Dehydrogenase Length = 490 | Back alignment and structure |
|
| >pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486 | Back alignment and structure |
|
| >pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant Length = 388 | Back alignment and structure |
|
| >pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio Cholerae, Deletion Mutant, Complexed With Imp And Mycophenolic Acid Length = 366 | Back alignment and structure |
|
| >pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum Inosine-5'- Monophosphate Dehydrogenase Length = 400 | Back alignment and structure |
|
| >pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi Inosine 5'- Monphosphate Dehydrogenase In Complex With A Sulfate Ion Length = 404 | Back alignment and structure |
|
| >pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By Inhibitor C64 Length = 361 | Back alignment and structure |
|
| >pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp Bound Length = 503 | Back alignment and structure |
|
| >pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From Tritrichomonas Foetus With Rvp And Moa Bound Length = 503 | Back alignment and structure |
|
| >pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 (Gmpr2) Length = 366 | Back alignment and structure |
|
| >pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate Reductase 2 Gmpr2 In Complex With Imp Length = 351 | Back alignment and structure |
|
| >pdb|2BLE|A Chain A, Structure Of Human Guanosine Monophosphate Reductase Gmpr1 In Complex With Gmp Length = 367 | Back alignment and structure |
|
| >pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate Dehydrogenase From Legionella Pneumophila Length = 361 | Back alignment and structure |
|
| >pdb|1PVN|A Chain A, The Crystal Structure Of The Complex Between Imp Dehydrogenase Catalytic Domain And A Transition State Analogue Mzp Length = 376 | Back alignment and structure |
|
| >pdb|1LRT|A Chain A, Crystal Structure Of Ternary Complex Of Tritrichomonas Foetus Inosine-5'-Monophosphate Dehydrogenase: Structural Characterization Of Nad+ Site In Microbial Enzyme Length = 376 | Back alignment and structure |
|
| >pdb|1YPF|A Chain A, Crystal Structure Of Guac (Ba5705) From Bacillus Anthracis At 1.8 A Resolution Length = 336 | Back alignment and structure |
|
| >pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380 | Back alignment and structure |
|
| >pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380 | Back alignment and structure |
|
| >pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like Protein (Np_599840.1) From Corynebacterium Glutamicum Atcc 13032 Kitasato At 1.50 A Resolution Length = 393 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 505 | |||
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 0.0 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 1e-122 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 1e-120 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 1e-120 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 1e-120 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 1e-119 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 1e-111 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 6e-84 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 2e-10 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 7e-84 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 3e-18 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 6e-80 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 2e-14 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 7e-78 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 5e-10 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 7e-76 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 3e-07 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 1e-75 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 6e-12 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 4e-66 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 3e-10 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 6e-49 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 1e-19 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 1e-18 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 2e-14 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 3e-14 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 1e-09 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 7e-09 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 8e-09 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 1e-08 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 1e-08 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 2e-08 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 3e-08 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 8e-08 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 1e-06 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 2e-05 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 2e-05 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 3e-05 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 5e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 5e-05 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 7e-05 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 1e-04 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 2e-04 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 3e-04 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 3e-04 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 5e-04 |
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514 | Back alignment and structure |
|---|
Score = 554 bits (1430), Expect = 0.0
Identities = 246/511 (48%), Positives = 327/511 (63%), Gaps = 25/511 (4%)
Query: 9 EDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT 68
EDG +A +LF+ TY+D + LP +IDF D V L++ LTR I L P ++SPMDTVT
Sbjct: 15 EDGLTAQQLFASADDLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVT 74
Query: 69 EDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSS--LD-VFKAPDGCIND 125
E MA AMA +GGIG +H NCT QA V R+V F D V +P + D
Sbjct: 75 EADMAIAMALMGGIGFIHHNCTPEFQANEV-----RKVKNFEQGFITDPVVLSPSHTVGD 129
Query: 126 AND------FDGSNYVFVTESGTRRSRILGYVTKSD--WENLSDNKVKIFDYMRDCSSNV 177
+ F G + +TE+GT S+++G VT D + D+ + + M V
Sbjct: 130 VLEAKMRHGFSG---IPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTPRIELV 186
Query: 178 SVPANYDLGQIDEVLEKNDVDFV-VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGK 236
PA L + +E+L+++ + ++ E + ++ R D+++ + YP K +
Sbjct: 187 VAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASKD---SQKQ 243
Query: 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN 296
+ GAA+GTRE DK RL+ L +AGV+V+VLDSSQGNS +QI M+ Y K+ YP L VIGGN
Sbjct: 244 LLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGN 303
Query: 297 VVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIA 356
VVT QA+NLI+AGVDGLRVGMG GSIC TQEV A GR Q TAVYKV+ A + GVP+IA
Sbjct: 304 VVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIA 363
Query: 357 DGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK- 415
DGGI GH+VKAL LGASTVMMGS LA +TEAPG Y + +G R+KKYRGMGSL+AM K
Sbjct: 364 DGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKS 423
Query: 416 -GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474
S +RY + K+KIAQGV G++ DKGS+ KF+PY + ++ G QD+GA SL ++
Sbjct: 424 SSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMM 483
Query: 475 RSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 505
S L+ E RT +AQ+EGGVHGL SYEK+ +
Sbjct: 484 YSGELKFEKRTMSAQIEGGVHGLHSYEKRLY 514
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503 | Back alignment and structure |
|---|
Score = 366 bits (943), Expect = e-122
Identities = 145/498 (29%), Positives = 243/498 (48%), Gaps = 42/498 (8%)
Query: 23 SYTYDDVIFLPHY--IDFPIDAVSLSTRLTR-------NIDLSLPCVASPMDTVTEDYMA 73
+T+++ + +P +D V+LST L + I+L +P V++ M +V+ + MA
Sbjct: 9 CHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMA 68
Query: 74 AAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSL---DVFKAPDGCINDANDFD 130
A+A GGI + + + QA +V V F + D PD D
Sbjct: 69 IALAREGGISFIFGSQSIESQAAMV-----HAVKNFKAGFVVSDSNVKPDQTFADVLAIS 123
Query: 131 GSNY---VFVTESGTRRSRILGYVTKSDWE-NLSDNKVKIFDYMRDCSSNVSVPANYDLG 186
V VT+ GT +LG VT+ D+ +L+ + K+ D M S V+ + L
Sbjct: 124 QRTTHNTVAVTDDGTPHGVLLGLVTQRDYPIDLTQTETKVSDMMTPFSKLVTAHQDTKLS 183
Query: 187 QIDEVLEKNDVD-FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGT 245
+ ++++ + ++ +++ D +V R+D +R + N +++VGA I T
Sbjct: 184 EANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNELVD---SQKRYLVGAGINT 240
Query: 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPE-LDVIGGNVVTMYQAQ 304
R+ ER+ LV+AG +V+ +DSS G S +Q I + ++ Y + + V GN+V +
Sbjct: 241 RDFR-ERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFR 299
Query: 305 NLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ------SGVPVIADG 358
L +AG D +++G+G GSIC T+E +GRGQATAV V + + +PV +DG
Sbjct: 300 YLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDG 359
Query: 359 GISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSD 418
GI H+ AL +GA +M+G + A E+P V NG +K+Y G GS A +
Sbjct: 360 GIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRAR---NW 416
Query: 419 QRY-LGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSR 477
QRY LG K KL +GV V G + + ++ VK + GA ++ +++
Sbjct: 417 QRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS--KAK 474
Query: 478 TLRLEVRTGAAQVEGGVH 495
+ + + VEGG H
Sbjct: 475 ITLV---SSVSIVEGGAH 489
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-120
Identities = 165/433 (38%), Positives = 242/433 (55%), Gaps = 20/433 (4%)
Query: 24 YTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIG 83
T+DDV+ +P Y + V + TRLTR I +++P V++ MDTVTE +A A+A GGIG
Sbjct: 17 LTFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIG 76
Query: 84 IVHSNCTAADQARLVVSAKSRRVPIFSSS--LD-VFKAPDGCINDANDFDGSNYVFVTES 140
I+H N T +QAR V V + D + PD + +A D +
Sbjct: 77 IIHKNLTPDEQARQV-----SIVKKTENGIIYDPITVTPDMTVKEAIDLMAEYKI----G 127
Query: 141 G----TRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKND 196
G R++G +T D + KI D M + P + L + E+L ++
Sbjct: 128 GLPVVDEEGRLVGLLTNRDVRFEKNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHR 187
Query: 197 VD-FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEH 255
++ ++ KD + + ++T +D+ + +PN + G+ +VGAA+GT ER+E
Sbjct: 188 IEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARD---EKGRLLVGAAVGTSPETMERVEK 244
Query: 256 LVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315
LVKAGV+V+V+D++ G+S IE ++ K YP+L V+ GNV T + LI+AG D ++
Sbjct: 245 LVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVK 304
Query: 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375
VG+G GSICTT+ V VG Q TAV + S +A + VP+IADGGI SG IVKAL GA
Sbjct: 305 VGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAE 364
Query: 376 TVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435
+VM+GS AG+ EAPG + GR+ K YRGMGSL AM GS RY + + +G+
Sbjct: 365 SVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVPEGIE 424
Query: 436 GAVADKGSVLKFI 448
G V KG+V +
Sbjct: 425 GMVPYKGTVKDVV 437
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496 | Back alignment and structure |
|---|
Score = 361 bits (928), Expect = e-120
Identities = 163/435 (37%), Positives = 242/435 (55%), Gaps = 22/435 (5%)
Query: 24 YTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIG 83
T+DDV+ +P + + L TRLT+NI L++P V++ MDTVTE +A A+A GGIG
Sbjct: 11 LTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIG 70
Query: 84 IVHSNCTAADQARLVVSAKSRRVPIFSSS--LD-VFKAPDGCINDANDFDGSNYV----F 136
+H N + QA V +V IF + V P+ I D + +
Sbjct: 71 FIHKNMSIEQQAAQV-----HQVKIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPV 125
Query: 137 VTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKND 196
VTE+ ++G +T D ++D + M +V ++ E + K
Sbjct: 126 VTENN----ELVGIITGRDVRFVTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKAR 181
Query: 197 VD-FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEH 255
V+ +V+ + + ++T +D + + PN K G+ VGAA+G ++ER++
Sbjct: 182 VEKILVVNDEFQLKGMITAKDFHKAESKPNACKD---EQGRLRVGAAVGAAPGNEERVKA 238
Query: 256 LVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315
LV+AGV+V+++DSS G+S ++ I+ + YP L++IGGNV T A+ LIEAGV ++
Sbjct: 239 LVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVK 298
Query: 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375
VG+G GSICTT+ V VG Q TA+ + +A + G+PVIADGGI SG I KA+ GAS
Sbjct: 299 VGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGAS 358
Query: 376 TVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL-GDKAKLK-IAQG 433
VM+GS AG+ EAPG + GR K YRGMGSL AM+KGS RY D A K + +G
Sbjct: 359 CVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEG 418
Query: 434 VVGAVADKGSVLKFI 448
+ G +A KG + + I
Sbjct: 419 IEGRIAYKGHLKEII 433
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-120
Identities = 161/450 (35%), Positives = 245/450 (54%), Gaps = 21/450 (4%)
Query: 7 PIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDT 66
+ + +G T+DDV+ +P D VS+ T L+ ++ L++P +++ MDT
Sbjct: 20 FQSNAMWESKFVKEGL--TFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDT 77
Query: 67 VTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSS--LD-VFKAPDGCI 123
VTE MA AMA GG+GI+H N + QA V +V S D F P+ +
Sbjct: 78 VTEADMAIAMARQGGLGIIHKNMSIEQQAEQV-----DKVKRSESGVISDPFFLTPEHQV 132
Query: 124 NDANDFDGSNY---VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN-VSV 179
DA G V V + R +++G +T D + D +KI D M ++
Sbjct: 133 YDAEHLMGKYRISGVPVVNNLDER-KLVGIITNRDMRFIQDYSIKISDVM--TKEQLITA 189
Query: 180 PANYDLGQIDEVLEKNDVD-FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWM 238
P L + +++L+K ++ +++ +G ++T +D+E++ +PN K G+ +
Sbjct: 190 PVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKD---KQGRLL 246
Query: 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV 298
VGAA+G R++ LVKA V+ +VLD++ G+S I+ +K + YP L++I GNV
Sbjct: 247 VGAAVGVTADAMTRIDALVKASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVA 306
Query: 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG 358
T + LIEAG + ++VG+G GSICTT+ V VG Q TAVY ++ A + G+PVIADG
Sbjct: 307 TAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADG 366
Query: 359 GISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSD 418
GI SG +VKAL GA VM+GS AG E+PG GR+ K YRGMGS+ AM KGS
Sbjct: 367 GIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSK 426
Query: 419 QRYLGDKAKLKIAQGVVGAVADKGSVLKFI 448
RY + K + +G+ G V KG + +
Sbjct: 427 DRYFQEGNKKLVPEGIEGRVPYKGPLADTV 456
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491 | Back alignment and structure |
|---|
Score = 358 bits (921), Expect = e-119
Identities = 151/446 (33%), Positives = 245/446 (54%), Gaps = 26/446 (5%)
Query: 15 DRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAA 74
+ +GY T+DDV+ +P + V L T+L N+ L++P + + MDTVT MA
Sbjct: 5 TKFLKKGY--TFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAI 62
Query: 75 AMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSS--LD-VFKAPDGCINDANDFDG 131
A+A GG+G++H N + +QA V R+V + +D F P+ +++A +
Sbjct: 63 AIARAGGLGVIHKNMSITEQAEEV-----RKVKRSENGVIIDPFFLTPEHKVSEAEELMQ 117
Query: 132 SNY---VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN-VSVPANYDLGQ 187
V + E+ R +++G +T D +SD I ++M S + V+ DL
Sbjct: 118 RYRISGVPIVETLANR-KLVGIITNRDMRFISDYNAPISEHM--TSEHLVTAAVGTDLET 174
Query: 188 IDEVLEKNDVD-FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTR 246
+ +L ++ ++ +++ G ++T +D+E++ +P+ K G+ +V AA+G
Sbjct: 175 AERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKD---EFGRLLVAAAVGVT 231
Query: 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNL 306
ER E L +AG + +V+D++ G+S+ + I + +P +I GN+ T A+ L
Sbjct: 232 SDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARAL 291
Query: 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHI 366
+AGVD ++VG+G GSICTT+ V VG Q TA+Y +++A + G +IADGGI SG I
Sbjct: 292 YDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDI 351
Query: 367 VKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRY----L 422
VKAL G + VM+GS AG+ EAPG GR+ K YRGMGS+ AM KGS RY +
Sbjct: 352 VKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSV 411
Query: 423 GDKAKLKIAQGVVGAVADKGSVLKFI 448
+ KL + +G+ G VA KG+ +
Sbjct: 412 NEANKL-VPEGIEGRVAYKGAASDIV 436
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486 | Back alignment and structure |
|---|
Score = 337 bits (866), Expect = e-111
Identities = 150/432 (34%), Positives = 234/432 (54%), Gaps = 33/432 (7%)
Query: 24 YTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIG 83
YT+DDV+ +P + V +STR+T N+ L++P +++ MDTVTE MA AMA GG+G
Sbjct: 15 YTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLG 74
Query: 84 IVHSNCTAADQARLVVSAKSRRVPIFSSS--LD-VFKAPDGCINDANDFDGSNY---VFV 137
++H N +Q V +RV D + APD ++ A + + V
Sbjct: 75 VIHRNMGIEEQVEQV-----KRVKRAERLIVEDVITIAPDETVDFALFLMEKHGIDGLPV 129
Query: 138 TESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDV 197
E +++G +TK D VK + M ++VP + ++ + +++ +N +
Sbjct: 130 VEDE----KVVGIITKKDIAAREGKLVK--ELM--TKEVITVPESIEVEEALKIMIENRI 181
Query: 198 D-FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256
D V+++ G+ + ++T D+ K Y N + +G+ +V AA+ D +R L
Sbjct: 182 DRLPVVDERGKLVGLITMSDLVARKKYKNAVRD---ENGELLVAAAVSP--FDIKRAIEL 236
Query: 257 VKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316
KAGV+V+V+D++ ++ I+ +K ++ + D I GN+ +L D ++V
Sbjct: 237 DKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV-DADFIVGNIANPKAVDDL--TFADAVKV 293
Query: 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAST 376
G+G GSICTT+ V VG Q TAV V+ A + G+ VIADGGI SG IVKA+ GA
Sbjct: 294 GIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADA 353
Query: 377 VMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRY----LGDKAKLKIAQ 432
VM+G+ LAG+ EAPG V NGR+ K+YRGMGSL AM KG +RY K + +
Sbjct: 354 VMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRKF-VPE 412
Query: 433 GVVGAVADKGSV 444
GV G V +G+V
Sbjct: 413 GVEGVVPYRGTV 424
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 262 bits (673), Expect = 6e-84
Identities = 115/298 (38%), Positives = 172/298 (57%), Gaps = 11/298 (3%)
Query: 200 VVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259
+ L ++G + +E+ + K G VGAA+G ++ER++ LV+A
Sbjct: 64 IALAQEGGIGFIHKNMSIEQQAAQVHQVK----ISGGLRVGAAVGAAPGNEERVKALVEA 119
Query: 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMG 319
GV+V+++DSS G+S ++ I+ + YP L++IGGNV T A+ LIEAGV ++VG+G
Sbjct: 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIG 179
Query: 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379
GSICTT+ V VG Q TA+ + +A + G+PVIADGGI SG I KA+ GAS VM+
Sbjct: 180 PGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239
Query: 380 GSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLK--IAQGVVGA 437
GS AG+ EAPG + GR K YRGMGSL AM+KGS RY + +G+ G
Sbjct: 240 GSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKLVPEGIEGR 299
Query: 438 VADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495
+A KG + + I M ++ G+++++ LR++ + + +GA E VH
Sbjct: 300 IAYKGHLKEIIHQQMGGLRSCMGLTGSATVED----LRTKAQFVRI-SGAGMKESHVH 352
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A Length = 366 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 25 TYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGI 84
T+DDV+ +P + + L TRLT+NI L++P V++ MDTVTE +A A+A GGIG
Sbjct: 15 TFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGF 74
Query: 85 VHSN----------CTAADQARLVVSA 101
+H N L V A
Sbjct: 75 IHKNMSIEQQAAQVHQVKISGGLRVGA 101
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 7e-84
Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 13/299 (4%)
Query: 201 VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260
+ ++ E + +PN K + K VGAA+ ER+E LVKA
Sbjct: 109 IFTAKQHLEKSDAYKNAEHKEDFPNACKD---LNNKLRVGAAVSIDIDTIERVEELVKAH 165
Query: 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320
V+++V+DS+ G+S+ IE+IK K YP LD+I GN+VT A +LI G D L+VG+G
Sbjct: 166 VDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGP 225
Query: 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
GSICTT+ V VG Q TA+ V + + +IADGGI SG +VKA+ GA +VM+G
Sbjct: 226 GSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285
Query: 381 SFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRY----LGDKAKLKIAQGVVG 436
+ AG+ E+P + NG++ K Y GMGS+ AM +GS RY + KL + +G+ G
Sbjct: 286 NLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKL-VPEGIEG 344
Query: 437 AVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495
V G + + + G LGA+++ S+ +++ + ++ E H
Sbjct: 345 MVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKI--NSKFVKI---SHSSLKESHPH 398
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Length = 404 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 14 ADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMA 73
+++ + T+DDV +P VSL T+LT+NI L++P ++S MDTVTE MA
Sbjct: 2 PNKITKEAL--TFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMA 59
Query: 74 AAMAALGGIGIVHSNCTAADQARLVVSAKSRR 105
A+A GGIGI+H N + Q + + K+ +
Sbjct: 60 IAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYK 91
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 6e-80
Identities = 116/297 (39%), Positives = 163/297 (54%), Gaps = 13/297 (4%)
Query: 201 VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260
D E D + + Y N G+ VGAAIG ++ ER + LV+AG
Sbjct: 102 DQNLDKESTDGKDTKSNNNIDAYSNENLD---NKGRLRVGAAIGV--NEIERAKLLVEAG 156
Query: 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320
V+V+VLDS+ G+S I +K K +DVI GNVVT + LIE G DG++VG+G
Sbjct: 157 VDVIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVGIGP 215
Query: 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
GSICTT+ V VG Q TA+ K SS+A++ G+P+IADGGI SG I KAL +GAS+VM+G
Sbjct: 216 GSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275
Query: 381 SFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLK--IAQGVVGAV 438
S LAG+ E+PG K YRGMGS+ AM GS RY +K + +G+ G V
Sbjct: 276 SILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRV 335
Query: 439 ADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495
KG + + + ++ LG++S++ +S + + T + E VH
Sbjct: 336 KYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWK--KSSYVEI---TTSGLRESHVH 387
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Length = 400 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Query: 14 ADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMA 73
+ +G T++D++ +P+Y + VSL T+LT+N+ L +P ++S MDTVTE MA
Sbjct: 2 GTKNIGKGL--TFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMA 59
Query: 74 AAMAALGGIGIVHSNCTAADQARLVVSAK 102
MA LGGIGI+H N Q V+ K
Sbjct: 60 VGMARLGGIGIIHKNMDMESQVNEVLKVK 88
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 7e-78
Identities = 114/292 (39%), Positives = 163/292 (55%), Gaps = 15/292 (5%)
Query: 207 ERLDVVTRE-DVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVV 265
+ ++ + D+E K G VGAAIG ++ ER + LV+AGV+V+V
Sbjct: 69 GGIGIIHKNMDMESQVNEVLKVKN----SGGLRVGAAIGV--NEIERAKLLVEAGVDVIV 122
Query: 266 LDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325
LDS+ G+S I +K K +DVI GNVVT + LIE G DG++VG+G GSICT
Sbjct: 123 LDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICT 181
Query: 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385
T+ V VG Q TA+ K SS+A++ G+P+IADGGI SG I KAL +GAS+VM+GS LAG
Sbjct: 182 TRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAG 241
Query: 386 STEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLK--IAQGVVGAVADKGS 443
+ E+PG K YRGMGS+ AM GS RY +K + +G+ G V KG
Sbjct: 242 TEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKMVPEGIEGRVKYKGE 301
Query: 444 VLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVH 495
+ + + ++ LG++S++ +S + + T + E VH
Sbjct: 302 MEGVVYQLVGGLRSCMGYLGSASIEELWK--KSSYVEI---TTSGLRESHVH 348
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Length = 361 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
Query: 24 YTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIG 83
T++D++ +P+Y + VSL T+LT+N+ L +P ++S MDTVTE MA MA LGGIG
Sbjct: 13 LTFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIG 72
Query: 84 IVHSN----------CTAADQARLVVSA 101
I+H N + L V A
Sbjct: 73 IIHKNMDMESQVNEVLKVKNSGGLRVGA 100
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 7e-76
Identities = 87/299 (29%), Positives = 147/299 (49%), Gaps = 25/299 (8%)
Query: 179 VPANYD---LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDG 235
+ AN D ++ +VL K + F + K + + + + D
Sbjct: 61 IAANMDTVGTFEMAKVLCKFSL-FTAVHKH---------YSLVQWQEFAGQNP-----DC 105
Query: 236 KWMVGAAIGTRESDKERLEHLVKA--GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI 293
+ A+ GT SD E+LE +++A V + LD + G S +E +K +K +P+ ++
Sbjct: 106 LEHLAASSGTGSSDFEQLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIM 165
Query: 294 GGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353
GNVVT + LI +G D ++VG+G GS+CTT++ VG Q +AV + + A
Sbjct: 166 AGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGH 225
Query: 354 VIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAM 413
+I+DGG S G + KA GA VM+G LAG +E+ G + ++G++ K + GM S AM
Sbjct: 226 IISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAM 285
Query: 414 TKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472
++Y G A+ + ++G V KG V I + ++ +GA+ L+
Sbjct: 286 -----KKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSR 339
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Length = 351 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 25 TYDDVIFLPHY--------IDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAM 76
+ DV+ P +D S S R ++ +P +A+ MDTV MA +
Sbjct: 21 DFKDVLLRPKRSTLKSRSEVDLT---RSFSFRNSKQTYSGVPIIAANMDTVGTFEMAKVL 77
Query: 77 AALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSS 111
VH + + + +S
Sbjct: 78 CKFSLFTAVHKHYSLVQWQEFAGQNPDCLEHLAAS 112
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361 | Back alignment and structure |
|---|
Score = 241 bits (618), Expect = 1e-75
Identities = 79/264 (29%), Positives = 126/264 (47%), Gaps = 15/264 (5%)
Query: 233 PDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV 292
K V ++G E++ +R E L AG + +D + ++ + + +K ++ +
Sbjct: 85 KKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCI 144
Query: 293 IGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGV 352
+ GNV T A L G D ++ G+G GS+C+T+ G T + +++
Sbjct: 145 MAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDC----SRADR 200
Query: 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYV-YQNGRRVKKYRGMGSLE 411
++ADGGI SG IVKAL GA VM+G LAGS PG +G +VK+YRGM S E
Sbjct: 201 SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASRE 260
Query: 412 AMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471
A + +LG + K A+GV V K + I + ++ G GA S+
Sbjct: 261 AQ-----EAFLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISE-- 313
Query: 472 DLLRSRTLRLEVRTGAAQVEGGVH 495
L+ + + V T A ++E H
Sbjct: 314 --LQRKLNYVIV-TQAGRIESLPH 334
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 24 YTYDDVIFLPHYIDF-PIDAV-SLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGG 81
T+DDV+ +P Y V + ST + L+LP +++ MDT+TE MA M + G
Sbjct: 8 ITFDDVLLVPSYNHHESRRVVETTSTDRLGKLTLNLPVISANMDTITESNMANFMHSKGA 67
Query: 82 IGIVHSNCTAADQARLVVSAKSR 104
+G +H T + + K
Sbjct: 68 MGALHRFMTIEENIQEFKKCKGP 90
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 4e-66
Identities = 71/262 (27%), Positives = 117/262 (44%), Gaps = 25/262 (9%)
Query: 238 MVGAAIGTRESDKERLEHLVKAGVN--VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG 295
+ ++G +E + E ++ L + + +D + G+S+ I MI++ KK PE VI G
Sbjct: 96 IASISVGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAG 155
Query: 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVG--RGQATAVYKVSSIAAQSGVP 353
NV T + L AG D +VG+G G +C T+ G Q A+ + A P
Sbjct: 156 NVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA---SKP 212
Query: 354 VIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAM 413
+IADGGI +G + K++ GA+ VM+GS AG E+PG + ++G+ K+Y G S
Sbjct: 213 IIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQK 272
Query: 414 TKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473
G+K K +G V KGS+ + Q ++ G + L +
Sbjct: 273 ---------GEK---KNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLD---SI 317
Query: 474 LRSRTLRLEVRTGAAQVEGGVH 495
+ + V+
Sbjct: 318 RTVDYVV---VKNSIFNGDKVY 336
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Length = 336 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 24 YTYDDVIFLPHYID-FPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGI 82
+ Y+D+ +P + L ++ LP V + M T+ ++ +A +A
Sbjct: 14 FDYEDIQLIPAKCIVNSRSECDTTVTLGKHK-FKLPVVPANMQTIIDERIATYLAENNYF 72
Query: 83 GIVH 86
I+H
Sbjct: 73 YIMH 76
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Length = 393 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 6e-49
Identities = 48/245 (19%), Positives = 93/245 (37%), Gaps = 20/245 (8%)
Query: 192 LEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWM----VGAAIGTRE 247
L++ + ++G++ ++ L P + + + A + +
Sbjct: 108 LDEAIAKVIAAYEEGDQAAAT--RTLQELHAAPLDTELLSERIAQVRDSGEIVAVRVSPQ 165
Query: 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAK----KTYPELDVIGGNVVTMYQA 303
+ +E ++KAG +++V+ + ++ + ++ VI G V A
Sbjct: 166 NVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLDVPVIAGGVNDYTTA 225
Query: 304 QNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ-------SGVPVIA 356
+++ G G+ VG G T + ATA+ V++ V +IA
Sbjct: 226 LHMMRTGAVGIIVGGGE---NTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIA 282
Query: 357 DGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKG 416
DG I NSG +VKA+ GA V++GS LA + EA G + G +
Sbjct: 283 DGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDL 342
Query: 417 SDQRY 421
+
Sbjct: 343 DEAAP 347
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 1e-19
Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 8/133 (6%)
Query: 251 ERLEHLVKAGVNVVVLDSSQGNSSFQ--IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIE 308
+ ++ L+++ V+ LD++ + E++ Y + P + I ++ T+ +A+N
Sbjct: 79 KEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNV-EIMADIATVEEAKNAAR 137
Query: 309 AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368
G D + G+ T + + VIA+G + +
Sbjct: 138 LGFDYI----GTTLHGYT-SYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKR 192
Query: 369 ALVLGASTVMMGS 381
+ LG ++G
Sbjct: 193 VMDLGVHCSVVGG 205
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 1e-18
Identities = 29/172 (16%), Positives = 68/172 (39%), Gaps = 15/172 (8%)
Query: 213 TREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQ-- 270
+ D++ ++ +L +G K + ++ L + V+ +D ++
Sbjct: 57 SVRDIKEIQAITDLPI--IGIIKKDYPPQEPFI-TATMTEVDQLAALNIAVIAMDCTKRD 113
Query: 271 -GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEV 329
+ I+ K+ YP ++ ++ T + +AG+D + + SG +
Sbjct: 114 RHDGLDIASFIRQVKEKYPNQ-LLMADISTFDEGLVAHQAGIDFVGTTL-SGYTPYS--- 168
Query: 330 CAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381
R +A + ++G+ VIA+G I + K LG + +++G
Sbjct: 169 ----RQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGG 216
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 2e-14
Identities = 18/145 (12%), Positives = 50/145 (34%), Gaps = 13/145 (8%)
Query: 251 ERLEHLVKAGVNVVVLDS-SQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEA 309
+ ++ L +AG +++ D+ + ++ + + T+ + + +
Sbjct: 92 QDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLL---AMADCSTVNEGISCHQK 148
Query: 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA 369
G++ + + + T + + + +G VIA+G + A
Sbjct: 149 GIEFIGTTLSGYTGPITP---------VEPDLAMVTQLSHAGCRVIAEGRYNTPALAANA 199
Query: 370 LVLGASTVMMGSFLAGSTEAPGAYV 394
+ GA V +GS + +
Sbjct: 200 IEHGAWAVTVGSAITRIEHICQWFS 224
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 3e-14
Identities = 22/147 (14%), Positives = 50/147 (34%), Gaps = 13/147 (8%)
Query: 249 DKERLEHLVKAGVNVVVLD-SSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLI 307
+ ++ L +AG ++ +D +++ ++ + + + ++
Sbjct: 90 FLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHL---LTMADCSSVDDGLACQ 146
Query: 308 EAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367
G D + M + T E + +G VIA+G ++
Sbjct: 147 RLGADIIGTTMSGYTTPDTPEE---------PDLPLVKALHDAGCRVIAEGRYNSPALAA 197
Query: 368 KALVLGASTVMMGSFLAGSTEAPGAYV 394
+A+ GA V +GS + G Y
Sbjct: 198 EAIRYGAWAVTVGSAITRLEHICGWYN 224
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Length = 328 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 31/142 (21%), Positives = 52/142 (36%), Gaps = 17/142 (11%)
Query: 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEA 309
E +++AG+ VV + + I + VI + A
Sbjct: 86 AEYRAAIIEAGIRVVET--AGNDPGEHIAEFRRHGVK-----VIH-KCTAVRHALKAERL 137
Query: 310 GVDGLRV-GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368
GVD + + G G + + + A + VP+IA GG ++ +V
Sbjct: 138 GVDAVSIDGFECAG--------HPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVA 189
Query: 369 ALVLGASTVMMGSFLAGSTEAP 390
AL LGA + MG+ + E P
Sbjct: 190 ALALGADAINMGTRFLATRECP 211
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 295 GNVVTMYQAQNLIEAGVDGLRVGMGSG---------SICTTQEVCAVGRGQATAVYKVSS 345
G ++ A L EAG + +G G G Q G +TA
Sbjct: 187 GFGMSKASAGKLYEAGAAAVDIG-GYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEI 245
Query: 346 IAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS-FLAGSTE 388
+ +IA GG+ ++ + KA+ LGAS M FL T+
Sbjct: 246 RSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTD 289
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Length = 332 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 8e-09
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 23/144 (15%)
Query: 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAK-KTYPELDVIGGNVVTMYQAQNLIE 308
++ ++ +++ GV VV GN S +E A P V ++ A+ + +
Sbjct: 78 EDIVDLVIEEGVKVVTT--GAGNPSKYMERFHEAGIIVIPV-------VPSVALAKRMEK 128
Query: 309 AGVDGLRV-GMGSGSICTTQEVCAVGR-GQATAVYKVSSIAAQSGVPVIADGGISNSGHI 366
G D + GM +G G G+ T + V +A +PVIA GGI++
Sbjct: 129 IGADAVIAEGMEAG-----------GHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGA 177
Query: 367 VKALVLGASTVMMGSFLAGSTEAP 390
+LGA V +G+ + E+
Sbjct: 178 AAGFMLGAEAVQVGTRFVVAKESN 201
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Length = 326 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 23/145 (15%)
Query: 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAK-KTYPELDVIGGNVVTMYQAQNLI 307
+ ++ ++ V VV GN + I +K K P V + A+ +
Sbjct: 91 ADDLVKVCIEEKVPVVTF--GAGNPTKYIRELKENGTKVIPV-------VASDSLARMVE 141
Query: 308 EAGVDGLRV-GMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365
AG D + GM SG G G+ T V+ ++ +PVIA GGI++
Sbjct: 142 RAGADAVIAEGMESG-----------GHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRG 190
Query: 366 IVKALVLGASTVMMGSFLAGSTEAP 390
+ A LGA V MG+ S E+
Sbjct: 191 MAAAFALGAEAVQMGTRFVASVESD 215
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Length = 369 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 37/219 (16%), Positives = 72/219 (32%), Gaps = 25/219 (11%)
Query: 187 QIDEVLEKND----VDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA 242
+I + V+ + + + + ++ Y + G +
Sbjct: 53 EIKRLRGLTGRPFGVNVFMPQPELA--------ESGAVEVYAHQLAGEAAWYETELGDPD 104
Query: 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGN-SSFQIEMIKYAKKTYPELDVIGGNVVTMY 301
G + +L L+ V VV G I ++ A T
Sbjct: 105 GGRDDGYDAKLAVLLDDPVPVVS--FHFGVPDREVIARLRRAGTL------TLVTATTPE 156
Query: 302 QAQNLIEAGVDGLRV-GMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADGG 359
+A+ + AG D + G+ +G T + + ++ + +PV+A GG
Sbjct: 157 EARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGG 216
Query: 360 ISNSGHIVKALVLGASTVMMGS-FLAGSTEAPGAYVYQN 397
I G I L GA +G+ FLA + E+ ++
Sbjct: 217 IMRGGQIAAVLAAGADAAQLGTAFLA-TDESGAPGPHKR 254
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 295 GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR----------GQATAVYKVS 344
G+ ++ A L + + + V G+ E G TA +
Sbjct: 190 GHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILE 249
Query: 345 SIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS-FLAGSTE 388
+P++A GG+ KAL LGA + + L + E
Sbjct: 250 VREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALE 294
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 21/165 (12%)
Query: 244 GTRESDKERLEHLVKAGVNV---VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV--- 297
++ ++ ++ +N+ +++ + + + K L I V
Sbjct: 159 AGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQ-LPFILKEVGFG 217
Query: 298 VTMYQAQNLIEAGVDGLRVGMGSG--------SICTTQEVCAVGRGQATAVYKVSSIAAQ 349
+ + Q I+ GV + + G G + GQ TA +++
Sbjct: 218 MDVKTIQTAIDLGVKTVDIS-GRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLM 276
Query: 350 SGVPVIADGGISNSGHIVKALVLGASTVMMG-----SFLAGSTEA 389
V ++A GGI + I+KALVLGA V + S
Sbjct: 277 DKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHE 321
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 8e-08
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 18/118 (15%)
Query: 288 PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSG-----------SICTTQEVCAVGR-- 334
P + GN ++M A+ L G+ G G I +
Sbjct: 189 PIIVKESGNGISMETAKLLYSYGIKNFDTS-GQGGTNWIAIEMIRDIRRGNWKAESAKNF 247
Query: 335 ---GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS-FLAGSTE 388
G TA + + ++ GGI + KA+ LGA M L + E
Sbjct: 248 LDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIE 305
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 16/137 (11%), Positives = 50/137 (36%), Gaps = 8/137 (5%)
Query: 146 RILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFV-VLEK 204
G V K D +L + +F+ + + V ++ + ++ ++ V+++
Sbjct: 55 HFRGVVNKEDLLDLDLDS-SVFNKVS--LPDFFVHEEDNITHALLLFLEHQEPYLPVVDE 111
Query: 205 DGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVV 264
+ V+ D P ++ V ++ ++ L + +N++
Sbjct: 112 EMRLKGAVSLHDFLEALIEAL---AMDVPGIRFSVLLEDKP-GELRKVVDALALSNINIL 167
Query: 265 VLDSSQGNSSFQIEMIK 281
+ +++ + +IK
Sbjct: 168 SVITTRSGDGKREVLIK 184
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 346 IAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
A++G PV+ D G IVKAL LGA V++G
Sbjct: 273 SVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLG 307
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 2e-05
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 35/161 (21%)
Query: 253 LEHLVKAGVNV--VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAG 310
+ L K G++V + S + I+ + P+ + G V+T Q +G
Sbjct: 35 ADTLAKNGLSVAEITFRSEAA-----ADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSG 89
Query: 311 VDGL----------------RVGMGSGSICTTQEVCAVGRG-------QATAVYKVSSIA 347
D + + G A+ G A A V I
Sbjct: 90 ADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIK 149
Query: 348 AQSG----VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384
A G + ++ GGI +I L + GS+
Sbjct: 150 ALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACGGSWFV 189
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 26/203 (12%), Positives = 69/203 (33%), Gaps = 26/203 (12%)
Query: 45 LSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSR 104
++++ +P + +T +E M ++ I + + + A L V
Sbjct: 131 ACLAMSKSRARRIPLIDVDGETGSE--MIVSVLTQYRI-LKFISMNCKETAMLRVPLNQM 187
Query: 105 RVPIFSSSLDVFKA-PDGCINDA----NDFDGSNYVFVTESGTRRSRILGYVTKSDWENL 159
+ +S ++ A + + D + + S V G +L D +L
Sbjct: 188 TIGTWS---NLATASMETKVYDVIKMLAEKNISAVPIVNSEG----TLLNVYESVDVMHL 240
Query: 160 SDNK------VKIFDYMRDCSSN----VSVPANYDLGQIDEVLEKNDVD-FVVLEKDGER 208
+ + + + + +N + A L I + ++ + V V++++ +
Sbjct: 241 IQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKL 300
Query: 209 LDVVTREDVERLKGYPNLGKGTV 231
+++ D+ Y V
Sbjct: 301 EGILSLADILNYIIYDKTTTPGV 323
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
AAQ +PV DGG+ + KAL LGA+ V +G
Sbjct: 276 AAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 309
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 5e-05
Identities = 82/557 (14%), Positives = 169/557 (30%), Gaps = 147/557 (26%)
Query: 4 SPLPIEDGFSA--DRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVA 61
P + + DRL++ D+ +F + + + L L L L
Sbjct: 104 QPSMMTRMYIEQRDRLYN-------DNQVFAKYNVSRLQPYLKLRQAL-----LEL---- 147
Query: 62 SPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRV------PIFSSSLDV 115
P V D + G G A D S +V IF +L
Sbjct: 148 RPAKNVLIDGV-------LGSG---KTWVALDVCL------SYKVQCKMDFKIFWLNLKN 191
Query: 116 FKAPDGCINDANDF------------DGS-NYVFVTESGTRRSRILGYVTKSDWEN---- 158
+P+ + D S N S R L + +EN
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLLV 249
Query: 159 LSD--NK--VKIFDYMRDC-----SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERL 209
L + N F+ C + V ++ + + + L D E
Sbjct: 250 LLNVQNAKAWNAFNL--SCKILLTTRFKQV-TDFLSAATTTHISLDHHS-MTLTPD-EVK 304
Query: 210 DV---VTREDVERLKGYPNLGKGTVGPDGKWMVGAAI--------GTRESDKERLEHLVK 258
+ + L P T P ++ +I + + ++L +++
Sbjct: 305 SLLLKYLDCRPQDL---PREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPEL-----DV-IGGNVVTMYQAQNLIEAGVD 312
+ +N VL+ + E +K + L I ++++ ++I++ V
Sbjct: 361 SSLN--VLEPA--------EY----RKMFDRLSVFPPSAHIPTILLSLIW-FDVIKSDVM 405
Query: 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL 372
+ + S+ V + + + SI + V + + + H +++V
Sbjct: 406 VVVNKLHKYSL--------VEKQPKESTISIPSIYLELKVKLENEYAL----H--RSIV- 450
Query: 373 GASTVMMGSFLAGSTEAPGA--YVYQN-GRRVKKYRGMGSLEAMTKG-SDQRYLGDKAKL 428
+ +F + P Y Y + G +K + D R+L + K+
Sbjct: 451 -DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKI 507
Query: 429 K---IAQGVVGAVADKGSVLK----FI----PYTMQAVKQGFQDLGASSLQSAHDLLRSR 477
+ A G++ + LK +I P + V + + +L+ S+
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN----AILDFLPKIEENLICSK 563
Query: 478 TLRLEVRTGAAQVEGGV 494
L +R + +
Sbjct: 564 YTDL-LRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 1e-04
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 39/165 (23%)
Query: 181 ANYDLGQIDE----VLEKNDVDFVVLEKDG-ERLDVVTREDVERLKG---YPNLGKGTVG 232
N+D + + +L K ++D +++ KD + K + +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFVEEVLR 88
Query: 233 PDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQ------IEMIKYAKKT 286
+ K+++ + I T + + + + + D N F ++ ++
Sbjct: 89 INYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYND----NQVFAKYNVSRLQPYLKLRQA 143
Query: 287 YPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM-GSGSICTTQEVC 330
EL V + G+ GSG +VC
Sbjct: 144 LLELRPAKN--VLID---------------GVLGSGKTWVALDVC 171
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
VP++ D G+ H+ KAL GA V +G
Sbjct: 280 RVNKRVPIVFDSGVRRGEHVAKALASGADVVALG 313
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 7e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
A + V V DGG+ ++KAL LGA V +G
Sbjct: 303 AVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 336
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
A + + V DGG+ ++KAL LGA + +G
Sbjct: 268 AVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Length = 214 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 35/171 (20%)
Query: 243 IGTRESDKERLEHLVKAGVNV--VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTM 300
+ E + LV GV V V L + ++ I+ K PE V G V+
Sbjct: 24 VKKLEHAVPMAKALVAGGVRVLNVTL-----RTECAVDAIRAIAKEVPEAIVGAGTVLNP 78
Query: 301 YQAQNLIEAGVDGL----------------RVGMGSGSICTTQEVCAVGRGQ-------A 337
Q + EAG + + G ++ + + G A
Sbjct: 79 QQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPA 138
Query: 338 TAVYKVSSIAAQSG----VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384
A V ++ A +G V GGI + + L L + + GS+L
Sbjct: 139 EANGGVKALQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIGGSWLV 188
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Length = 225 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 35/163 (21%)
Query: 253 LEHLVKAGVNV--VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAG 310
+ L G+ V L S G ++ I+ ++ PEL V G V+ + AG
Sbjct: 44 ADALAAGGIRTLEVTLRSQHG-----LKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAG 98
Query: 311 VDGL----------------RVGMGSGSICTTQEVCAVGRG-------QATAVYKVSSIA 347
+ + + G ++ + G A V++I
Sbjct: 99 AQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEISGGVAAIK 158
Query: 348 AQSG----VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386
A G + GG++ + ++ + L + +++ S
Sbjct: 159 AFGGPFGDIRFCPTGGVNPA-NVRNYMALPNVMCVGTTWMLDS 200
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 352 VPVIADGGISNSGHIVKALVLGASTVMMG 380
+ V DGG+ ++KAL LGA V +G
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLG 432
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Length = 232 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 35/161 (21%)
Query: 253 LEHLVKAGVNV--VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAG 310
+ L + G+ + S +E I+ ++ PE+ + G ++ QA EAG
Sbjct: 52 GKVLAENGLPAAEITFRSDAA-----VEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG 106
Query: 311 VDGL----------------RVGMGSGSICTTQEVCAVGRG-------QATAVYKVSSIA 347
+ + + G + A+ G A A +S +
Sbjct: 107 ATFVVSPGFNPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEASGGISMVK 166
Query: 348 AQSG----VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384
+ G + ++ GGI +I L + G+++
Sbjct: 167 SLVGPYGDIRLMPTGGI-TPSNIDNYLAIPQVLACGGTWMV 206
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 100.0 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 100.0 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 100.0 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 100.0 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 100.0 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 100.0 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 100.0 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 100.0 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 100.0 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 100.0 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 100.0 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 100.0 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 100.0 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 100.0 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.98 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.9 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.89 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.87 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.84 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.83 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.83 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.82 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.81 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.81 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.8 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.75 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.69 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.68 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 99.67 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.66 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.66 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.65 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 99.65 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.65 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.63 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.6 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.59 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.59 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.59 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.59 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.59 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.56 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.55 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.55 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.55 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.55 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.55 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.54 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.54 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.54 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.53 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.52 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.52 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.52 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.51 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.51 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.51 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.5 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.5 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 99.5 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.5 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.5 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.49 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.49 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.48 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.47 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.47 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.45 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.45 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.45 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.44 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.43 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.43 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.42 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.42 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.41 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.4 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.4 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.38 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.38 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.38 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.36 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.36 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.35 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.35 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.33 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.33 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.33 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.31 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.28 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.27 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.23 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.23 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.22 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.19 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.19 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.18 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.16 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.15 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.14 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.14 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.11 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.1 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.1 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.03 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.02 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.0 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.91 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 98.89 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.88 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 98.87 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.85 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.83 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.81 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.8 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.78 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 98.77 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 98.74 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 98.7 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 98.67 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.66 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.63 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.62 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.62 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.6 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.55 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 98.51 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.5 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 98.49 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 98.48 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 98.48 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.48 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 98.47 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.46 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.46 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.45 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.44 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.44 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.44 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.42 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.42 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 98.41 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.41 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.39 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.39 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.38 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 98.34 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.3 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 98.29 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.28 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.27 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 98.26 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 98.26 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.26 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.24 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 98.23 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.21 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.2 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.2 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.18 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 98.18 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.18 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 98.18 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 98.18 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.18 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.17 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.17 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 98.16 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.16 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.15 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 98.14 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 98.13 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.13 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 98.13 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 98.13 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 98.12 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.1 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 98.1 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 98.09 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 98.08 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.08 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 98.08 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.07 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 98.07 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 98.06 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 98.05 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.03 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 98.01 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.0 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 97.99 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 97.99 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 97.99 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 97.99 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.98 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.98 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 97.98 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 97.98 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 97.97 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 97.97 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 97.97 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 97.97 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 97.96 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 97.96 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.96 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 97.95 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 97.94 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 97.94 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 97.94 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 97.93 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 97.92 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 97.87 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 97.86 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 97.85 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 97.85 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 97.85 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.85 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 97.84 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 97.84 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 97.81 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 97.8 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 97.8 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 97.78 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 97.77 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.76 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.75 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 97.74 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 97.74 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 97.74 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.73 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 97.73 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.72 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 97.71 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 97.7 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.7 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 97.69 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 97.69 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 97.68 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 97.67 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 97.65 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.64 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 97.63 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 97.62 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 97.6 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 97.6 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.58 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.56 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.54 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 97.54 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 97.51 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 97.48 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.47 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 97.44 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.42 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 97.4 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 97.39 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 97.37 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 97.37 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.37 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 97.36 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 97.36 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 97.34 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.32 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.32 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 97.28 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.25 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.18 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.17 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 97.15 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.15 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.12 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 97.12 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.08 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 97.08 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.06 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 97.05 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 97.02 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 97.02 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 97.01 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 96.96 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 96.95 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 96.95 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 96.94 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 96.91 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 96.88 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 96.87 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 96.87 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 96.85 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.84 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 96.8 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 96.8 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 96.78 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 96.78 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 96.78 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 96.75 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 96.74 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 96.74 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 96.73 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 96.73 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 96.65 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 96.65 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 96.63 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 96.62 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 96.58 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 96.54 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.48 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 96.46 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 96.28 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 96.25 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 96.23 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 96.22 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 96.11 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 96.08 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.04 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 95.99 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 95.95 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 95.95 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 95.79 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 95.79 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 95.72 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 95.67 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 95.65 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 95.57 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 95.43 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 95.27 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 95.15 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 95.08 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 94.91 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 94.75 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 94.44 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 94.43 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 94.39 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 94.34 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 94.29 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 94.04 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 93.96 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 93.96 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 93.94 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 93.91 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 93.83 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 93.82 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 93.8 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 93.76 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 93.74 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 93.64 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 93.53 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 93.43 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 93.43 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 93.41 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 93.4 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 93.36 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 93.36 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 93.32 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.31 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 93.22 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 93.16 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 93.12 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 93.11 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 92.99 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 92.91 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 92.9 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 92.89 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 92.78 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 92.75 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 92.73 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 92.71 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 92.64 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 92.63 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 92.52 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 92.49 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 92.47 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 92.45 | |
| 1wx0_A | 223 | Transaldolase; structural genomics, riken structur | 92.45 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 92.44 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 92.4 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 92.3 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 92.28 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 92.28 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 92.14 | |
| 1vpx_A | 230 | Protein (transaldolase (EC 2.2.1.2)); TM0295, stru | 91.99 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 91.97 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 91.89 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 91.88 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 91.81 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 91.79 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 91.74 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 91.7 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 91.66 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 91.58 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 91.53 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 91.5 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 91.47 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 91.46 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 91.41 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 91.26 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 91.09 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 91.01 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 91.01 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 91.0 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 90.99 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 90.9 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 90.7 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 90.69 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 90.59 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 90.54 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 90.48 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 90.47 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 90.41 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 90.37 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 90.37 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 90.34 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 90.34 | |
| 1l6w_A | 220 | Fructose-6-phosphate aldolase 1; alpha-beta barrel | 90.31 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 90.27 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 90.12 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 90.1 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 90.07 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 90.02 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 90.0 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 89.99 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 89.96 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 89.94 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 89.91 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 89.89 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 89.88 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 89.86 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 89.86 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 89.85 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 89.84 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 89.76 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 89.75 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 89.62 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 89.59 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 89.55 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 89.52 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.45 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 89.3 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 89.2 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 89.2 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 89.19 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 89.11 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 89.07 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 89.06 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 89.05 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 89.04 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 89.03 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 89.01 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 89.01 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 88.98 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 88.96 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 88.95 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 88.92 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 88.91 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 88.88 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 88.73 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 88.73 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 88.72 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 88.67 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 88.65 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 88.59 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 88.57 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 88.57 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 88.51 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 88.49 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 88.48 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 88.46 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 88.43 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 88.39 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 88.38 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 88.36 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 88.22 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 88.21 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 88.19 | |
| 1a3w_A | 500 | Pyruvate kinase; allosteric regulation, tranferase | 88.11 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 88.06 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 88.05 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 88.01 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 87.94 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 87.92 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 87.9 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 87.75 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 87.71 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 87.55 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 87.54 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 87.43 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 87.43 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 87.35 | |
| 3hqn_D | 499 | Pyruvate kinase, PK; TIM barrel, T-state enzyme, t | 87.05 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 87.04 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 86.92 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 86.87 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 86.87 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 86.83 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 86.82 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 86.81 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 86.8 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 86.78 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 86.77 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 86.76 |
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-107 Score=843.77 Aligned_cols=494 Identities=47% Similarity=0.747 Sum_probs=353.0
Q ss_pred CCCCCCCCccHHHhhccC--CCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCC
Q 010640 4 SPLPIEDGFSADRLFSQG--YSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGG 81 (505)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~--~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg 81 (505)
+-|++.||+++.++|... .+||||||+|+|+|++++|+++++.|++|+++.+++|+|+|+||+||+.+||++|++.||
T Consensus 38 ~~~~~~dg~~~~~l~~~~~~~GLTfDDVlLvP~~s~v~p~~Vdl~t~lt~~i~L~iPlvSA~MDTVTe~~MAIamAr~GG 117 (556)
T 4af0_A 38 EEYPRGDGLSLQELMDSRKNGGLTYNDFLVLPGHINFPASDVSLQSKATKNIVLNTPFLSSPMDTVTEDRMAIALALHGG 117 (556)
T ss_dssp TTSSSCSSBCHHHHTCHHHHCSCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSCEEECCCTTTCSHHHHHHHHHTTC
T ss_pred HhCCCcCCCCHHHHhcCCCCCCCChhhEEEccCCCCCCcccceeeeeccCCcEeCCCEEecCcccccCHHHHHHHHHCCC
Confidence 359999999999999753 389999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcCCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc
Q 010640 82 IGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN 158 (505)
Q Consensus 82 ~g~i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~ 158 (505)
+|+||+|+++++|+++++++|+++++|..+| ++++|+.|+.|+.++|.+ ++ +||++++..+++|+||||.+|+++
T Consensus 118 iGvIH~n~sie~Qa~~V~~VKr~e~g~i~dP--vtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf 195 (556)
T 4af0_A 118 LGIIHHNCSAEEQAAMVRRVKKYENGFITDP--LCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQF 195 (556)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHCCC-------------------------------------------------------
T ss_pred eEEEcCCCCHHHHHHHHHHHHhcccCccCCC--eEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEecccccc
Confidence 9999999999999999999999999999999 999999999999999999 88 999997666789999999999998
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCcc-CCCCc
Q 010640 159 LSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTV-GPDGK 236 (505)
Q Consensus 159 ~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~-d~~~~ 236 (505)
. +.++++.++|++ ++++++++.++++|.++|.++++..|||||+ ++|+|+||++|+++...++++ .+ |..++
T Consensus 196 ~-d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~A---~k~d~~gr 269 (556)
T 4af0_A 196 Q-DAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPYA---SKVPESKQ 269 (556)
T ss_dssp -----------------------------------------------------------------CTTC---CBCTTTCC
T ss_pred c-ccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCcc---hhcchhhc
Confidence 5 567899999998 8999999999999999999999999999999 999999999999999999987 65 78899
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
++++++++..++..++++.|+++|+|++++|.++|++..+++.++++++.+|+++|++|||.|.+.++.|+++|+|++.|
T Consensus 270 L~VgAAVgv~~d~~eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkV 349 (556)
T 4af0_A 270 LYCGAAIGTRPGDKDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRI 349 (556)
T ss_dssp BCCEEEECSSHHHHHHHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred eeeEEEeccCccHHHHHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEee
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceee
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQ 396 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~ 396 (505)
++|+|++|+||...|.|.|+++++.+|+++++++++|||+||||+++.||+|||++|||+||+|++|+.|.|||++.+++
T Consensus 350 GiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~ 429 (556)
T 4af0_A 350 GMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYH 429 (556)
T ss_dssp CSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEE
T ss_pred cCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEeeeecccCcHHHHhc-----------------cccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHh
Q 010640 397 NGRRVKKYRGMGSLEAMTK-----------------GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGF 459 (505)
Q Consensus 397 ~~~~~k~~~g~~s~~~~~~-----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m 459 (505)
+|++||.||||||++||++ ++.+|||++..+.+++||+++++||+|++.+++.+|.++||++|
T Consensus 430 ~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~~~s~dRyfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m 509 (556)
T 4af0_A 430 EGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLDNAATARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSL 509 (556)
T ss_dssp TTEEEEEEECTTSHHHHTTC------------CCSCSSEEECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeecccccHHHHHhcccCCcccccccccccccchhhhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhh
Confidence 9999999999999999963 35679999888888999999999999999999999999999999
Q ss_pred hccCCCCHHHHHHhhhcCceeEEEecccccccCccCcceeccccCC
Q 010640 460 QDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 505 (505)
Q Consensus 460 ~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 505 (505)
+|+|++||+|||+++++|..||+++|++++.||||||+++|+||-|
T Consensus 510 ~y~Ga~~i~el~~~a~~g~~rf~~iT~ag~~Es~~Hdv~s~~K~l~ 555 (556)
T 4af0_A 510 QDAAIKSVSELHSCARSGSLRFELRTASAQLEGGVHGLNSYTKRLF 555 (556)
T ss_dssp HHTTCSSHHHHHHHHHHTCSCEEECCCC------------------
T ss_pred hccCCCcHHHHHHhhhccCceEEEEChhhhhhcCCCccceeeeecc
Confidence 9999999999999999999999999999999999999999999976
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-88 Score=720.26 Aligned_cols=464 Identities=35% Similarity=0.545 Sum_probs=430.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+|+++.|+++++.+++|+++.+++|+++|+|+++|+.+|++++++.||+|+||++++++++++++++++
T Consensus 10 ~~t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtVTe~~ma~a~a~~GGiGvI~~n~s~e~qa~~V~~Vk 89 (496)
T 4fxs_A 10 ALTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVK 89 (496)
T ss_dssp CCCGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHHH
T ss_pred CcCcccEEEecCccccccccccccceeccccccCCCceecCcchhhHHHHHHHHHHcCCcceecCCCCHHHHHHHHHhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEe
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSV 179 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v 179 (505)
++.++|+.+| +++++++|+.+++++|.+ ++ +||+|+ +++++|+||.+|+++....+.++.++|++.++++++
T Consensus 90 ~~~~~m~~d~--v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~~lvGiVt~rDL~~~~~~~~~v~diM~p~~~~vtv 164 (496)
T 4fxs_A 90 IFEAGVVTHP--VTVRPEQTIADVMELTHYHGFAGFPVVTE---NNELVGIITGRDVRFVTDLTKSVAAVMTPKERLATV 164 (496)
T ss_dssp HCCC--CBCC--CCBCSSSBHHHHHHHHTSSCCCEEEEECS---SSBEEEEEEHHHHTTCCCTTSBGGGTSEEGGGCCEE
T ss_pred ccccccccCc--eEECCCCCHHHHHHHHHHcCCcEEEEEcc---CCEEEEEEEHHHHhhcccCCCcHHHHhcCCCCCEEE
Confidence 9999999999 999999999999999999 77 999998 899999999999987666778999999943458999
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
++++++.+++++|.+++++.+||||+ |+++|+||++|+++...++.+ .+|..+++.+++.++..++..++++.+++
T Consensus 165 ~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a---~~d~~grL~v~aavG~~~d~~~~a~~l~~ 241 (496)
T 4fxs_A 165 KEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNA---CKDEQGRLRVGAAVGAAPGNEERVKALVE 241 (496)
T ss_dssp ECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTC---CBCTTSCBCCEEECCSSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccch---hhhcccceeeeeeeccccchHHHHHHHHh
Confidence 99999999999999999999999999 999999999999999999887 78899999999999988889999999999
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
+|+|+++++.+++++..+++.++++++.+|++||++|++.+.+.++.+.++|+|+|+++.|+|+.|+++...++|.|+++
T Consensus 242 aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~ 321 (496)
T 4fxs_A 242 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQIT 321 (496)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCCHHH
T ss_pred ccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCccHHH
Confidence 99999999999999989999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccc
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSD 418 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~ 418 (505)
++.++.++++..++|||++|||+++.|+++|+++||++||+|++|+.|.|||++..+++|++||.||||||++||.+++.
T Consensus 322 ~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~ 401 (496)
T 4fxs_A 322 AIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSS 401 (496)
T ss_dssp HHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSC
T ss_pred HHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhcccc
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc--cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCc
Q 010640 419 QRYLGDK--AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHG 496 (505)
Q Consensus 419 ~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~ 496 (505)
+|||++. .+..++||+++++||+|++.+++.+|.++||++|+|+|++||+|||++ ++|+++|+||++||||||
T Consensus 402 ~r~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~~-----~~~~~~~~~~~~e~~~h~ 476 (496)
T 4fxs_A 402 DRYFQTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK-----AQFVRISGAGMKESHVHD 476 (496)
T ss_dssp CSTTTC---CCCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH-----CCEEECCHHHHHHHSCCS
T ss_pred ccccccccccccccCCccEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC-----CeEEEEccchhhccCCCc
Confidence 9999865 356799999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cee
Q 010640 497 LVS 499 (505)
Q Consensus 497 ~~~ 499 (505)
+..
T Consensus 477 ~~~ 479 (496)
T 4fxs_A 477 VQI 479 (496)
T ss_dssp SCC
T ss_pred ccc
Confidence 875
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-86 Score=706.39 Aligned_cols=463 Identities=37% Similarity=0.557 Sum_probs=298.3
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+|+++.|+++++.+++|+++.+++|+++|+|+++|+.+|++++++.||+|+||.+++++++++++++++
T Consensus 9 ~~t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~M~tVTe~~lA~ala~~GGiGvI~~~~~~e~~a~~v~~vk 88 (490)
T 4avf_A 9 ALTFDDVLLIPGYSEVLPKDVSLKTRLTRGIELNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNMGIEQQAAEVRKVK 88 (490)
T ss_dssp ECCGGGEEECCCCBCSCGGGSCCCEEEETTEEESSSEEECSCTTTCSHHHHHHHHHHTSEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCcceEEEeCCCCcccccceeeecccccCcccCCCccccchhhhCHHHHHHHHHHcCCCccccCCCCHHHHHHHhhhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEe
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSV 179 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v 179 (505)
++.++|..+| +++++++|+.+++++|.+ ++ +||+| +++++|+||.+|+++....+.++.++|++.++++++
T Consensus 89 ~~~~~m~~~~--v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g~lvGIVt~rDl~~~~~~~~~V~~vMtp~~~~vtv 162 (490)
T 4avf_A 89 KHETAIVRDP--VTVTPSTKIIELLQMAREYGFSGFPVVE----QGELVGIVTGRDLRVKPNAGDTVAAIMTPKDKLVTA 162 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCcccCc--eEeCCCCcHHHHHHHHHHhCCCEEEEEE----CCEEEEEEEhHHhhhccccCCcHHHHhccCCCCEEE
Confidence 9999999999 999999999999999999 87 99998 689999999999987666778999999953469999
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
++++++.+++++|.+++++.+||||+ |+++|+||++|+++...++.+ .+|..+++.+++.++...+..++++.+++
T Consensus 163 ~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p~a---~kd~~grl~v~aavG~~~~~~~~a~~l~~ 239 (490)
T 4avf_A 163 REGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLA---SKDEQGRLRVGAAVGTGADTGERVAALVA 239 (490)
T ss_dssp --------------------------------------------CTTC---CBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCcch---hhhccCcceeeeeeccccchHHHHHHHhh
Confidence 99999999999999999999999999 999999999999999999988 78999999999999988889999999999
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
+|+|+++++.+++++..+.+.++++++.+|++||++|++.+.+.|+.+.++|+|+|.++.++|++|.++...++|.|+++
T Consensus 240 aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p~~~ 319 (490)
T 4avf_A 240 AGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVPQIS 319 (490)
T ss_dssp TTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCCHHH
T ss_pred cccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCccHHH
Confidence 99999999999999989999999999999889999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHH--hcc
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAM--TKG 416 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~--~~~ 416 (505)
++.++.++++..++|||++|||+++.|+++|+++||++||+|++|+.+.|||++..+++|++||.||||||++|| ..+
T Consensus 320 ~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~ 399 (490)
T 4avf_A 320 AIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQG 399 (490)
T ss_dssp HHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC---------------
T ss_pred HHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhccc
Confidence 999999988777899999999999999999999999999999999999999999999999999999999999999 568
Q ss_pred cccccccccc---ccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCc
Q 010640 417 SDQRYLGDKA---KLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGG 493 (505)
Q Consensus 417 ~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 493 (505)
+.+|||++.. +..++||+++++||+|++.+++++|.++||++|+|+|++||+|||++ ++|+++|+||++|||
T Consensus 400 ~~~r~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~~-----~~~~~~~~~~~~e~~ 474 (490)
T 4avf_A 400 SSDRYFQDASAGAEKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRTQ-----PQFVRITGAGMAESH 474 (490)
T ss_dssp ------------------------CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS-----CCEEEECCC------
T ss_pred ccchhhcccccccccccCCCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhC-----CEEEEEccchhhcCC
Confidence 9999998653 46799999999999999999999999999999999999999999999 699999999999999
Q ss_pred cCccee
Q 010640 494 VHGLVS 499 (505)
Q Consensus 494 ~~~~~~ 499 (505)
|||+..
T Consensus 475 ~h~~~~ 480 (490)
T 4avf_A 475 VHDVQI 480 (490)
T ss_dssp ------
T ss_pred CCcccc
Confidence 999875
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-85 Score=698.64 Aligned_cols=465 Identities=36% Similarity=0.574 Sum_probs=404.5
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.|+++++.+.+|+++.+++|+|+|+|+++|+.+|++++++.||+|+||++++++++..++++++
T Consensus 34 ~~t~~d~~~~p~~~~~~~~~~~~~t~lt~~i~l~iPivsa~MdtvTe~~lAia~a~~GgiGvIh~~~~~~~q~~~V~~V~ 113 (511)
T 3usb_A 34 GLTFDDVLLVPAKSDVLPREVSVKTVLSESLQLNIPLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVK 113 (511)
T ss_dssp CCCGGGEEECCCCCCCCTTTSBCCEEEETTEEESSSEEECSCTTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHHH
T ss_pred CcceEEEEEECCcccccccceEeeeEeecccccCCCccccCchhhcHHHHHHHHHhcCCceeecccCCHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEe
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSV 179 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v 179 (505)
+..++|..+| +++++++|+.+++++|.+ ++ +||+|++ .+++++|+||.+|+++....+.++.++|++ ++++++
T Consensus 114 ~~~~~m~~d~--v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~~lvGiVt~rDl~~~~~~~~~V~~vM~~-~~~vtv 189 (511)
T 3usb_A 114 RSESGVISDP--FFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DERKLVGIITNRDMRFIQDYSIKISDVMTK-EQLITA 189 (511)
T ss_dssp TSSSCSSSSC--CCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTCBEEEEEEHHHHTTCCCSSSBHHHHCCC-CCCCCE
T ss_pred ccccccccCC--EEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCCEEEEEEEehHhhhhccCCCcHHHhccc-CCCEEE
Confidence 9999999999 999999999999999999 87 9999852 147999999999998765667899999996 588999
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
++++++.+++++|.+++++.+||||+ |+++|+||++|+++...++.+ .+|..+++++++.++...+..++++.+++
T Consensus 190 ~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a---~~D~~~rl~V~aavg~~~d~~era~aLve 266 (511)
T 3usb_A 190 PVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNS---AKDKQGRLLVGAAVGVTADAMTRIDALVK 266 (511)
T ss_dssp ETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC---CBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccc---hhhhccceeeeeeeeeccchHHHHHHHHh
Confidence 99999999999999999999999999 999999999999999999887 78888999999999888888999999999
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
+|+++++++.+++++..+++.++++++.+|++++++|++.+.+.|+.+.++|+|+|+++.++|++|+++...|||.|++.
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p~~~ 346 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVPQLT 346 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCCHHH
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCCcHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccc
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSD 418 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~ 418 (505)
++.++++.++..++|||++|||+++.|++||+++||++|++|++|+.+.|||++..+++|++||.||||+|.+||.+++.
T Consensus 347 ~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~ 426 (511)
T 3usb_A 347 AVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSK 426 (511)
T ss_dssp HHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC---------------
T ss_pred HHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccc
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCcce
Q 010640 419 QRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLV 498 (505)
Q Consensus 419 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 498 (505)
+|||++..+.+++||+++++||+|++++++++|.++||++|+|+|+++++|||++ .+|+++|+++++||||||+.
T Consensus 427 ~r~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~-----~~~~~~~~~~~~e~~~h~~~ 501 (511)
T 3usb_A 427 DRYFQEGNKKLVPEGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLREN-----AQFIRMSGAGLLESHPHHVQ 501 (511)
T ss_dssp -------------------CBCCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH-----CCEEECCHHHHC--------
T ss_pred cchhccccccccCCCcEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC-----CeEEEEcccccccCCCCCCC
Confidence 9999987777899999999999999999999999999999999999999999999 69999999999999999987
Q ss_pred e
Q 010640 499 S 499 (505)
Q Consensus 499 ~ 499 (505)
.
T Consensus 502 ~ 502 (511)
T 3usb_A 502 I 502 (511)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-80 Score=658.13 Aligned_cols=468 Identities=30% Similarity=0.457 Sum_probs=317.9
Q ss_pred hhccCCCCcccceeecCCCCC--CCCCCeeeeeeecC-------cccccceEEEccchhhhHHHHHHHHHHcCCeeEEcC
Q 010640 17 LFSQGYSYTYDDVIFLPHYID--FPIDAVSLSTRLTR-------NIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHS 87 (505)
Q Consensus 17 ~~~~~~~~~~~d~~l~p~~~~--~~~~~~~~~~~lt~-------~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~ 87 (505)
+|+.. +||||||+|+|+|++ +.|+++++.|++|+ ++.+.+|+|+++|+++++.+|++++++.|++|+||.
T Consensus 4 ~~~~~-~~t~~d~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~iP~vsa~m~~vt~~~la~~la~~gg~G~I~~ 82 (503)
T 1me8_A 4 YYNEP-CHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIFG 82 (503)
T ss_dssp CCSSC-CCCGGGEEECCCCCCTTCCGGGCBCCEECSCEETTCCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEECC
T ss_pred cccCC-CcccccEEEcCCCCCCccCCCcceeeeeccccccccccceeecCceEeccchhhhHHHHHHHHHhCCCcceeeC
Confidence 56665 999999999999999 99999999999999 999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC---CeEEEEEecccccc-cc
Q 010640 88 NCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR---SRILGYVTKSDWEN-LS 160 (505)
Q Consensus 88 ~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~---g~lvGivt~~Dl~~-~~ 160 (505)
+++++++++.+.+++..+.+|..+| +++++++|+.+++++|.+ ++ +||+|+ + ++++|+||.+|+++ ..
T Consensus 83 ~~~~e~~~~~v~~V~~~e~gM~~~~--~~v~~~~tv~eal~~m~~~~~s~~pVvd~---~~~~g~lvGiVt~~Dl~~~~~ 157 (503)
T 1me8_A 83 SQSIESQAAMVHAVKNFKAGFVVSD--SNVKPDQTFADVLAISQRTTHNTVAVTDD---GTPHGVLLGLVTQRDYPIDLT 157 (503)
T ss_dssp SSCHHHHHHHHHHHHTTTC-------------------------------------------------------------
T ss_pred CCCHHHHHHHHhhhhhcccCcccCC--eEECCCCcHHHHHHHHHHcCceEEEEEEC---CCcCCeEEEEEEHHHHHhhhc
Confidence 9999999999999988776688888 999999999999999999 77 999996 6 89999999999985 33
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceE
Q 010640 161 DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMV 239 (505)
Q Consensus 161 ~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v 239 (505)
....++.++|++.++++++++++++.+++++|.+++++.+||||+ |+++|+||++||++....+.. ..+..+++.+
T Consensus 158 ~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~---~~d~~~~l~v 234 (503)
T 1me8_A 158 QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE---LVDSQKRYLV 234 (503)
T ss_dssp ----------------------------------------------------------------CCC---CBCTTSCBCC
T ss_pred cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc---hhcccccccc
Confidence 456789999998223999999999999999999999999999999 999999999999999887665 5667778888
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEcc
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
++.++. ....+.++.+.+.|++++.++.++|++..+++.++++++.+|+ +++++|++.+.+.++.+.++|+|+++++.
T Consensus 235 ~a~v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~Vg~ 313 (503)
T 1me8_A 235 GAGINT-RDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGI 313 (503)
T ss_dssp EEEECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred ccccCc-hhHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEecc
Confidence 777765 5677889999999999999999999888889999999999877 99999999999999999999999999999
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhc------CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCcc
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQS------GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGA 392 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~------~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~ 392 (505)
|+|++|+++.+.+||.|++.++.++.++++.+ ++|||++|||+++.|++|||++||++|++|++|+.|.||+++
T Consensus 314 ~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~ 393 (503)
T 1me8_A 314 GGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTR 393 (503)
T ss_dssp SCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSC
T ss_pred cCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCc
Confidence 99999999999999999999999999988766 799999999999999999999999999999999999999999
Q ss_pred ceeecCeEeeeecccCcHHHHhccccccc-cccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 393 YVYQNGRRVKKYRGMGSLEAMTKGSDQRY-LGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 393 ~~~~~~~~~k~~~g~~s~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
..+.+|++||.||||||.++|. .+|| |.+..+.+++||+++++||++++.+.+++|.++||++|+|+|++|++||+
T Consensus 394 ~~~~~g~~~k~~~g~~s~~~~~---~~~~~~~~~~~~~~~eg~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~ 470 (503)
T 1me8_A 394 KVTINGSVMKEYWGEGSSRARN---WQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQ 470 (503)
T ss_dssp EEEETTEEEEEEECTTSHHHHC---C--------------CCCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHH
T ss_pred eEEECCeEEEeecCccchhHhh---ccccccccccceecccceeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 9999999999999999999985 3899 87666788999999999999999999999999999999999999999999
Q ss_pred HhhhcCceeEEEecccccccCccCcceeccc
Q 010640 472 DLLRSRTLRLEVRTGAAQVEGGVHGLVSYEK 502 (505)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 502 (505)
++ ++|+++|++++.||||||+++..+
T Consensus 471 ~~-----~~~~~~~~~~~~e~~~~~~~~~~~ 496 (503)
T 1me8_A 471 SK-----AKITLVSSVSIVEGGAHDVIVKDR 496 (503)
T ss_dssp HH-----CCEEECCTTCSTTTSCCSCC----
T ss_pred hC-----CCEEEEcccccccCCCccceeecc
Confidence 98 599999999999999999998654
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-79 Score=656.69 Aligned_cols=496 Identities=49% Similarity=0.775 Sum_probs=372.2
Q ss_pred CCCCCCCccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeE
Q 010640 5 PLPIEDGFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGI 84 (505)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~ 84 (505)
.|..+||++++++|+++++||||||+|+|+++.++|..+++.++||+++.+.+|+|+++|+++++..|+.++++.|++|+
T Consensus 11 ~~~~~~g~~~~~~~~~~ralt~ddvlLmp~~s~~~p~~v~l~~eLt~~~~~~iP~vsa~md~~t~~~la~~ia~~gg~gi 90 (514)
T 1jcn_A 11 GYVPEDGLTAQQLFASADDLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLISSPMDTVTEADMAIAMALMGGIGF 90 (514)
T ss_dssp CBSSCCCBCHHHHTTSSSCCCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHTTCEEE
T ss_pred ccccCCCCCHHHHhccCcccccCcEEeccCccCCCcceeEEEeeccCCeeEeceEEEEehhhhhhhhHHHHHHhcCCeeE
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-
Q 010640 85 VHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS- 160 (505)
Q Consensus 85 i~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~- 160 (505)
++.+.+++++.+.+++++++.++|..+| +++++++++.+++++|.+ ++ +||+|++..+++++|+||.+|++...
T Consensus 91 i~~~~t~e~~~~~v~~v~~~~~im~~~~--~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~ 168 (514)
T 1jcn_A 91 IHHNCTPEFQANEVRKVKNFEQGFITDP--VVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE 168 (514)
T ss_dssp ECCSSCHHHHHHHHHHHHTCCTTSCSSC--CCCCC-----------------CEESCC--------CCEECTTTTC----
T ss_pred EecCCCHHHHHHHHHhhhhhhhccccCC--EEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh
Confidence 9988999999999999999999999999 999999999999999999 77 99998511128999999999997643
Q ss_pred -ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcce
Q 010640 161 -DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWM 238 (505)
Q Consensus 161 -~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~ 238 (505)
....++.++|++.++++++++++++.+++++|.+++++.+||||+ |+++|+||++|+++...++.+ .++..+++.
T Consensus 169 ~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~---~~~~~~rl~ 245 (514)
T 1jcn_A 169 KDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLA---SKDSQKQLL 245 (514)
T ss_dssp ------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCCCTTC---CBCTTSCBC
T ss_pred ccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhhCcch---hcccCCcee
Confidence 346789999986557899999999999999999999999999998 999999999999999988776 677788899
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEcc
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
+++.++...+..+.++.++++|+|+++++.++|++...++.++++++.+|++||++|++.+.+.|+.+.++|+|+|+++.
T Consensus 246 vga~vG~~~~~~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~ 325 (514)
T 1jcn_A 246 CGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGM 325 (514)
T ss_dssp CEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred eeeEecCchhhHHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECC
Confidence 99998877778899999999999999999999988778899999999988899999999999999999999999999988
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNG 398 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~ 398 (505)
|+|++|+++...+||.|+..++..+.+.++..++|||++|||+++.|+.||+++||++|++|++|+.+.|++++..|++|
T Consensus 326 ~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g 405 (514)
T 1jcn_A 326 GCGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDG 405 (514)
T ss_dssp SCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC------
T ss_pred CCCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECC
Confidence 88889999888899999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred eEeeeecccCcHHHHhc--cccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhc
Q 010640 399 RRVKKYRGMGSLEAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRS 476 (505)
Q Consensus 399 ~~~k~~~g~~s~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~ 476 (505)
++||.||||+|+++|.. ++.+|||++.++...++|+++.++++|++.+++++|.++||++|+++|++|++||+++++.
T Consensus 406 ~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~~~~ 485 (514)
T 1jcn_A 406 VRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYS 485 (514)
T ss_dssp --------------------------------------------CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHHHHT
T ss_pred EEEEEecCcCCHHHHhhccccchhhccccccceecccceecCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhhccc
Confidence 99999999999999976 5779999776666788999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecccccccCccCcceeccccCC
Q 010640 477 RTLRLEVRTGAAQVEGGVHGLVSYEKKSF 505 (505)
Q Consensus 477 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 505 (505)
+.++|+++|+|++.||||||+++|+++.|
T Consensus 486 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 514 (514)
T 1jcn_A 486 GELKFEKRTMSAQIEGGVHGLHSYEKRLY 514 (514)
T ss_dssp TCSCEEECCSSCCC---------------
T ss_pred CceEEEEechhhhhccCCceeEeeccCCC
Confidence 99999999999999999999999998865
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-75 Score=623.39 Aligned_cols=470 Identities=33% Similarity=0.486 Sum_probs=327.6
Q ss_pred CccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCC
Q 010640 11 GFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCT 90 (505)
Q Consensus 11 ~~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~ 90 (505)
|-+++++|++..+||||||+|+|+|+++.|+++++.|+||+++.+.+|+|+++|+++++.+|++++++.||+|+++.+++
T Consensus 2 g~~~~~~~~~~~~~~~dd~~~~p~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~m~~vt~~ela~ava~~GglG~i~~~~~ 81 (486)
T 2cu0_A 2 GKFVEKLEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMG 81 (486)
T ss_dssp -CHHHHHHTCCCCCCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSC
T ss_pred cccHHHHhcCCCCcCccCEEEcCCcCCCCcceEEEEeeecCCcccccceEEccceeecHHHHHHHHHhcCCceeecCCCC
Confidence 45789999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccc
Q 010640 91 AADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIF 167 (505)
Q Consensus 91 ~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~ 167 (505)
++++.++++++++..+.|..++ +++++++++.+++++|.+ ++ +||++ +++++|+||.+|++. ..+.++.
T Consensus 82 ~e~~~~~I~~v~~~~~~m~~~~--~~v~~~~tv~ea~~~~~~~~~~~~pVvd----~~~lvGivt~~Dl~~--~~~~~v~ 153 (486)
T 2cu0_A 82 IEEQVEQVKRVKRAERLIVEDV--ITIAPDETVDFALFLMEKHGIDGLPVVE----DEKVVGIITKKDIAA--REGKLVK 153 (486)
T ss_dssp HHHHHHHHHHHHTCC-----------------------------------------------------------------
T ss_pred HHHHHHHHHhhcchhhccccCc--eEECCCCCHHHHHHHHHHcCCcEEEEEE----CCEEEEEEEHHHhcc--CCCCCHH
Confidence 9999999999999998999888 999999999999999999 77 99998 589999999999976 4567899
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCC
Q 010640 168 DYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTR 246 (505)
Q Consensus 168 ~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~ 246 (505)
++|++ +++++++++++.+++++|.+++++.+||||+ |+++|+||++||++...++.. .++..+.+.++..+..
T Consensus 154 ~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~~~~~---~~~~~g~~~v~~~~~~- 227 (486)
T 2cu0_A 154 ELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKKYKNA---VRDENGELLVAAAVSP- 227 (486)
T ss_dssp -------------------------------------------------------CCTTC---CBCTTSCBCCEEEECT-
T ss_pred HHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhhcccc---ccccCCceeecceech-
Confidence 99998 8999999999999999999999999999999 999999999999999876544 4555667777777654
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
.+ .+++..+.+.|+++++++..+|+...+++.++++++.+ ++|+++|++.+.+.++.+. |+|+|.++.|+|+.|++
T Consensus 228 ~~-~~~a~~l~~~gvd~lvvdta~G~~~~~L~~I~~l~~~~-~vpvi~k~v~~~~~a~~l~--G~d~v~vg~g~g~~~~~ 303 (486)
T 2cu0_A 228 FD-IKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV-DADFIVGNIANPKAVDDLT--FADAVKVGIGPGSICTT 303 (486)
T ss_dssp TC-HHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTC-CSEEEEEEECCHHHHTTCT--TSSEEEECSSCSTTBCH
T ss_pred hh-HHHHHHHHHhcCCceEEEecCCcEeehhhHHHHHHHHh-CCccccCCcCCHHHHHHhh--CCCeEEEeeeeccceee
Confidence 45 77888999999999999998899888999999999988 8999999999999999988 99999999999999999
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRG 406 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g 406 (505)
+...+||.|++.++.++++.++..++|||++|||+++.|++|||++||++|++|++|+.|.||+++..+.+|++||.|||
T Consensus 304 r~~~~~g~~~~~~l~~~~~~~~~~~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g 383 (486)
T 2cu0_A 304 RIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRG 383 (486)
T ss_dssp HHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEEC
T ss_pred eEEeecCcchHHHHHHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeec
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHhccccccccccc---cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEE
Q 010640 407 MGSLEAMTKGSDQRYLGDK---AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEV 483 (505)
Q Consensus 407 ~~s~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~ 483 (505)
|+|..||..++.+|||+++ .+..+++|+++.+|++|++++++++|.++||++|+++|++++.+||++ ..|++
T Consensus 384 ~~~~~a~~~~~~~r~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~-----~~~~~ 458 (486)
T 2cu0_A 384 MGSLGAMMKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK-----GEFVI 458 (486)
T ss_dssp TTSHHHHTC----------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH-----CCEEE
T ss_pred CCCHHHHhcccccccccccccccccccccceEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhh-----CCEEE
Confidence 9999999888899999864 234578999999999999999999999999999999999999999998 69999
Q ss_pred ecccccccCccCcceecccc
Q 010640 484 RTGAAQVEGGVHGLVSYEKK 503 (505)
Q Consensus 484 ~~~~~~~e~~~~~~~~~~~~ 503 (505)
+|+++++||||||++++.++
T Consensus 459 ~~~~~~~e~~~~~~~~~~~~ 478 (486)
T 2cu0_A 459 ITHAGIKESHPHDIIITNEA 478 (486)
T ss_dssp CCHHHHHHHSCCSSCCSCCC
T ss_pred EcccccccCCCcccceeccC
Confidence 99999999999999987653
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-75 Score=620.38 Aligned_cols=468 Identities=37% Similarity=0.569 Sum_probs=301.2
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+|+.+.|.++++.++||+++.+.+|+|+++|+++++.+|++++++.||+|+++.++++++++..+.+++
T Consensus 16 ~~~~~dvll~p~~s~~~p~~v~~~~eLt~~~~l~iP~is~~m~~v~~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~ 95 (494)
T 1vrd_A 16 ALTFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVK 95 (494)
T ss_dssp CCCGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHH
T ss_pred ccccccEEeccccccCCCCceEEEehhhCCCccCceeEecchHHHhHHHHHHHHHHcCCceEEecCCChHHHHHHHHhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEe
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSV 179 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v 179 (505)
++.++|..++ +++++++++.+++++|.+ ++ +||+|+ +++++|+||.+|+++....+.++.++|++.++++++
T Consensus 96 ~~~~iM~~~~--~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v 170 (494)
T 1vrd_A 96 KTENGIIYDP--ITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EGRLVGLLTNRDVRFEKNLSKKIKDLMTPREKLIVA 170 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCccCC--eEECCCCCHHHHHHHHHHcCceEEEEEcC---CCEEEEEEEHHHHHhhcCCCCcHHHHhCCCCCCeEE
Confidence 9999999988 999999999999999999 77 999997 799999999999986545567899999865578999
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
++++++.+++++|.+++++.+||||+ |+++|+||++|+++...++.. .+|..+++.+++.++...+..++++.+++
T Consensus 171 ~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~---~~D~~~~l~vga~ig~~~~~~~~a~~l~~ 247 (494)
T 1vrd_A 171 PPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNA---ARDEKGRLLVGAAVGTSPETMERVEKLVK 247 (494)
T ss_dssp --------------------------------------CHHHHTCTTC---CBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccccc---cccchhhhccccccCcCHhHHHHHHHHHH
Confidence 99999999999999999999999998 999999999999999988766 66777888898888776778899999999
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
+|++++.++..+|+....++.++++++.+|++||++|++.+.++++.+.++|+|+|.+++++|+++.++...+|+.|+..
T Consensus 248 aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~ 327 (494)
T 1vrd_A 248 AGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLT 327 (494)
T ss_dssp TTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHH
T ss_pred hCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccccccCCCCccHHH
Confidence 99999999998898888899999999999889999999999999999999999999999888888888888899999999
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccc
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSD 418 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~ 418 (505)
++.++.+.++..++|||++|||+++.|++||+++||++|++|++|+.|.||+++..+++|+.+|.||||+|..||..|+.
T Consensus 328 ~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~ 407 (494)
T 1vrd_A 328 AVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSA 407 (494)
T ss_dssp HHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC----------
T ss_pred HHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccc
Confidence 99999988877789999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred ccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCcce
Q 010640 419 QRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLV 498 (505)
Q Consensus 419 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 498 (505)
+|||+++....+++|+++.+++++++++++++|.++||++|+++|++++.+||+. ..|+++|++++.||||||++
T Consensus 408 ~~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~-----~~~~~~~~~~~~e~~~~~~~ 482 (494)
T 1vrd_A 408 DRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEK-----AVFVKITPAGVKESHPHDII 482 (494)
T ss_dssp ---------------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH-----CCEEECC-------------
T ss_pred cchhhcccccccCCcceEccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhh-----CCEEEEcccccccCCCccce
Confidence 9999987556689999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred ecccc
Q 010640 499 SYEKK 503 (505)
Q Consensus 499 ~~~~~ 503 (505)
++.++
T Consensus 483 ~~~~~ 487 (494)
T 1vrd_A 483 ITKES 487 (494)
T ss_dssp -----
T ss_pred eeccC
Confidence 87654
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-72 Score=596.71 Aligned_cols=475 Identities=32% Similarity=0.551 Sum_probs=430.0
Q ss_pred ccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCH
Q 010640 12 FSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTA 91 (505)
Q Consensus 12 ~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~ 91 (505)
++ +++|. .+||||||+|+|+++.+.|+++++.++||+.+.+.+|+++++|+++++++|+.++++.||+|+++.++++
T Consensus 3 ~~-~~~~~--~~~~~~d~~~~p~~~~~~p~~v~~~t~lt~~l~~~~Piv~a~M~~vt~~eLa~av~~~Gg~G~i~~~~~~ 79 (491)
T 1zfj_A 3 WD-TKFLK--KGYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSI 79 (491)
T ss_dssp GG-GSSCC--CCCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCH
T ss_pred cc-hhhhc--cCCChhhEEeccCcCCcCccccccchhhhhcceecCceEecCchhccHHHHHHHHHHcCCceEEeCCCCH
Confidence 45 56666 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEe--CCCCCCeEEEEEecccccccccccccc
Q 010640 92 ADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTE--SGTRRSRILGYVTKSDWENLSDNKVKI 166 (505)
Q Consensus 92 ~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd--~~~~~g~lvGivt~~Dl~~~~~~~~~v 166 (505)
+++.+++++++++.++|..++ +++++++++.+++++|.+ ++ +||+| + +++++|+||.+|++.....+.++
T Consensus 80 e~~~~~i~~v~~~~~im~~~~--~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~---~~~lvGivt~~Dl~~~~~~~~~v 154 (491)
T 1zfj_A 80 TEQAEEVRKVKRSENGVIIDP--FFLTPEHKVSEAEELMQRYRISGVPIVETLA---NRKLVGIITNRDMRFISDYNAPI 154 (491)
T ss_dssp HHHHHHHHHHHHHTTTTSSSC--CCBCSSSBHHHHHHHHHHTTCSEEEEESCTT---TCBEEEEEEHHHHHHCSCSSSBT
T ss_pred HHHHHHHHHHhhHHhcCcCCC--eEECCCCcHHHHHHHHHHcCCCEEEEEEeCC---CCEEEEEEEHHHHhhhccCCCcH
Confidence 999999999988899999888 999999999999999988 76 99998 6 89999999999998554567789
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecC
Q 010640 167 FDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGT 245 (505)
Q Consensus 167 ~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~ 245 (505)
.++|++ .+++++++++++.+++++|.+++++.+||||+ |+++|+||++||++....+.+ .++..+++.++..++.
T Consensus 155 ~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~---~~d~~~~~~vg~~i~~ 230 (491)
T 1zfj_A 155 SEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHA---AKDEFGRLLVAAAVGV 230 (491)
T ss_dssp TTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC---CBCTTSCBCCEEEECS
T ss_pred HHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhcccc---ccCcCCcEEEEEeccC
Confidence 999984 26789999999999999999999999999999 999999999999999987665 5666677888888776
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.....++++.+.++|+|.++++.+.|+...+++.++++++.+|++|++.|++.+.+.++.+.++|+|+|.+++|+|+.+.
T Consensus 231 ~~~~~~~a~~l~~~G~d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g~~~~ 310 (491)
T 1zfj_A 231 TSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICT 310 (491)
T ss_dssp STTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBC
T ss_pred chhHHHHHHHHHHcCCCeEEEeeecCcchhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCCcceE
Confidence 66788999999999999999999888888889999999999888999999999999999999999999999999999999
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeec
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYR 405 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~ 405 (505)
++...+|+.|++.++.++...+...++|||++|||+++.|++||+++||++|++|++|+.+.|++++..+.+|++||.||
T Consensus 311 tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~ 390 (491)
T 1zfj_A 311 TRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYR 390 (491)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEE
T ss_pred EeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEe
Confidence 99899999999999999998887778999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHhcccccccccccc---ccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEE
Q 010640 406 GMGSLEAMTKGSDQRYLGDKA---KLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLE 482 (505)
Q Consensus 406 g~~s~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~ 482 (505)
||+|.+||..++.+|||+|+. ...+++|+++.++++++++++++.|.++||++|+++|++++.+||++ ..|+
T Consensus 391 g~~~~~a~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~-----~~~~ 465 (491)
T 1zfj_A 391 GMGSIAAMKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN-----AQFV 465 (491)
T ss_dssp CTTSHHHHCC--------------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH-----CCEE
T ss_pred cccCHHHHhccccccccccccccccccCcCcceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhc-----CcEE
Confidence 999999998888899998762 34478999999999999999999999999999999999999999998 5899
Q ss_pred EecccccccCccCcceecccc
Q 010640 483 VRTGAAQVEGGVHGLVSYEKK 503 (505)
Q Consensus 483 ~~~~~~~~e~~~~~~~~~~~~ 503 (505)
++|+++++||||||++++.++
T Consensus 466 ~~~~~~~~e~~~~~~~~~~~~ 486 (491)
T 1zfj_A 466 EMSGAGLIESHPHDVQITNEA 486 (491)
T ss_dssp ECCHHHHHHHSCCSSCCSSCB
T ss_pred EEcccccccCCCccceeeccC
Confidence 999999999999999988765
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-69 Score=554.74 Aligned_cols=381 Identities=39% Similarity=0.580 Sum_probs=278.7
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.|+++++.|+||+.+.+++|||+++|+++++++|++++++.||+|+||.+++++++++++++++
T Consensus 9 ~~t~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~~~~~e~~~~~i~~vk 88 (400)
T 3ffs_A 9 GLTFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVK 88 (400)
T ss_dssp ECCGGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHH
T ss_pred CCCceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+.++.+..+| ++ | . . +++ +++
T Consensus 89 ~~~~g~~~~P--~~--~-----------------~-~-----------------------------------nL~--~~~ 109 (400)
T 3ffs_A 89 NWISNLEKNE--ST--P-----------------D-Q-----------------------------------NLD--KES 109 (400)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred hhccCcccCC--CC--c-----------------c-c-----------------------------------ccc--CCC
Confidence 9887666666 21 0 0 0 100 011
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
.++.+ ++|+.+...++.+ .++..+++.+++.++..+ .+.++.++++|+|
T Consensus 110 ~~~~~--------------------------~~~~~~~~~~p~~---~~d~~g~l~v~~~v~~~~--~e~~~~lveaGvd 158 (400)
T 3ffs_A 110 TDGKD--------------------------TKSNNNIDAYSNE---NLDNKGRLRVGAAIGVNE--IERAKLLVEAGVD 158 (400)
T ss_dssp ---------------------------------------CCTTC---CBCTTSSBCCEEEECCC---CHHHHHHHHHTCS
T ss_pred CCHHH--------------------------HHHHHHhhhCcch---hhccccceeEEeecCCCH--HHHHHHHHHcCCC
Confidence 11111 2334444455555 567778888888887654 7899999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
++++++++|++..+.+.++++++.+ +++|++|++.|.+.|+.+.++|+|+|+++.++|+.|+++...+++.|++.++.+
T Consensus 159 vIvldta~G~~~~~~e~I~~ik~~~-~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~ 237 (400)
T 3ffs_A 159 VIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEK 237 (400)
T ss_dssp EEEECCSCCSBHHHHHHHHHHHTTC-CCEEEEEEECSHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHH
T ss_pred EEEEeCCCCCcccHHHHHHHHHhcC-CCeEEEeecCCHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHH
Confidence 9999999998888899999999988 899999999999999999999999999987778888888888899999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
+.+.++..++|||++|||.++.|+++|+++||++||+|++|+.|+|||++..+.||++||.||||||++||.+++.+|||
T Consensus 238 v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~ 317 (400)
T 3ffs_A 238 CSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYF 317 (400)
T ss_dssp HHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTTSSCCEEESSSSEEEC-------------------
T ss_pred HHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhh
Confidence 99888777899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccc--cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCccee
Q 010640 423 GDK--AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVS 499 (505)
Q Consensus 423 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 499 (505)
++. .+..++||+++++||+|+++++|.+|.++||++|+|+|++||+|||++ ++|+++|++++.||||||+..
T Consensus 318 ~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~i~el~~~-----~~f~~~t~~~~~e~~~h~~~~ 391 (400)
T 3ffs_A 318 QEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK-----SSYVEITTSGLRESHVHDVEI 391 (400)
T ss_dssp ----------------CEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH-----CCEEECCC-------------
T ss_pred cccccccccCCCCcEEecCCCCCHHHHHHHHHHHHHHhhhhcCcccHHHHHhC-----CeEEEEccchhhcCCCCCccc
Confidence 864 456799999999999999999999999999999999999999999999 699999999999999999875
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-65 Score=516.13 Aligned_cols=343 Identities=42% Similarity=0.650 Sum_probs=304.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.++++++.|+||+.+.+++|+|+++|+++++.+|++++++.||+|+++.+++++++.+++++++
T Consensus 13 ~~~fddv~lvp~~~~~~~~~vdl~t~lt~~~~l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~~~~s~e~~~~~i~~vk 92 (366)
T 4fo4_A 13 ALTFDDVLLVPAHSTVLPNTADLRTRLTKNIALNIPMVSASMDTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQVK 92 (366)
T ss_dssp CCCGGGEEECCCCCCCCGGGCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHH
T ss_pred cCCcceEEEECCCCCCChhhcccceecccccccCCCEEeCCCCCCChHHHHHHHHHcCCceEeecCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999888887776
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+.. +
T Consensus 93 ~~~------~---------------------------------------------------------------------- 96 (366)
T 4fo4_A 93 ISG------G---------------------------------------------------------------------- 96 (366)
T ss_dssp TTT------S----------------------------------------------------------------------
T ss_pred hcC------c----------------------------------------------------------------------
Confidence 531 1
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+.+++.++...+..++++.++++|+|
T Consensus 97 ------------------------------------------------------l~vga~vg~~~~~~~~~~~lieaGvd 122 (366)
T 4fo4_A 97 ------------------------------------------------------LRVGAAVGAAPGNEERVKALVEAGVD 122 (366)
T ss_dssp ------------------------------------------------------CCCEEECCSCTTCHHHHHHHHHTTCS
T ss_pred ------------------------------------------------------eeEEEEeccChhHHHHHHHHHhCCCC
Confidence 00111222223356889999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+++++.++|++..+++.++++++.+|+++|++|++.|.+.++.+.++|+|+|+++.++|++|+++...++|.|+++++.+
T Consensus 123 ~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p~~~~l~~ 202 (366)
T 4fo4_A 123 VLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIAD 202 (366)
T ss_dssp EEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccchHHHHHH
Confidence 99999999988888999999999998999999999999999999999999999988889999999889999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
++++++..++|||++|||.++.|+++||++||++|++|++|+.|.|||++..+++|++||.||||||+.||++++.+|||
T Consensus 203 v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~~~~ry~ 282 (366)
T 4fo4_A 203 AAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYF 282 (366)
T ss_dssp HHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC-------
T ss_pred HHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcccccchh
Confidence 99888878999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred ccc--cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCcceec
Q 010640 423 GDK--AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSY 500 (505)
Q Consensus 423 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 500 (505)
++. .+..++||+++++||+|++++++.+|.++||++|+|+|++||+|||++ ++|+++|+++++||||||+..-
T Consensus 283 ~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~~~~~~~-----~~f~~~t~~~~~e~~~h~~~~~ 357 (366)
T 4fo4_A 283 QTDNAADKLVPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRTK-----AQFVRISGAGMKESHVHDVQIT 357 (366)
T ss_dssp --------CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH-----CCEEECCHHHHHHHSCCSSCCS
T ss_pred ccccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHhhhccCcccHHHHHhC-----CeEEEEccchhhccCCCCCccc
Confidence 864 356799999999999999999999999999999999999999999999 5999999999999999998753
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-62 Score=496.56 Aligned_cols=339 Identities=43% Similarity=0.632 Sum_probs=270.7
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.++++++.|+||+.+.+.+|+++++|+++++.+|++++++.||+|+++.+++++++.+.+++++
T Consensus 12 ~~~fddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Pii~apM~~vt~~~lA~avA~~GGlgii~~~~s~e~~~~~I~~vk 91 (361)
T 3khj_A 12 GLTFEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVK 91 (361)
T ss_dssp CCCGGGEEECCCCBCCCGGGCCCCEESSSSCEESSSEEECSSTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHH
T ss_pred CCCcceEEEECCCCCCCHHHccCceecccccccCCCEEeecCCCCCcHHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988887777665
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
...+ -|
T Consensus 92 ~~~~----~p---------------------------------------------------------------------- 97 (361)
T 3khj_A 92 NSGG----LR---------------------------------------------------------------------- 97 (361)
T ss_dssp HTTC----CC----------------------------------------------------------------------
T ss_pred hccC----ce----------------------------------------------------------------------
Confidence 4221 11
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
++++++... .++++.++++|+|
T Consensus 98 --------------------------------------------------------vga~ig~~~--~e~a~~l~eaGad 119 (361)
T 3khj_A 98 --------------------------------------------------------VGAAIGVNE--IERAKLLVEAGVD 119 (361)
T ss_dssp --------------------------------------------------------CEEEECTTC--HHHHHHHHHTTCS
T ss_pred --------------------------------------------------------EEEEeCCCH--HHHHHHHHHcCcC
Confidence 112222222 6788899999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+++++.++|++..+.+.++++++.+ ++||++|++.+.+.++.+.++|+|+|.++.++|++|.++...++|.|+++++.+
T Consensus 120 ~I~ld~a~G~~~~~~~~i~~i~~~~-~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~ 198 (361)
T 3khj_A 120 VIVLDSAHGHSLNIIRTLKEIKSKM-NIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEK 198 (361)
T ss_dssp EEEECCSCCSBHHHHHHHHHHHHHC-CCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHH
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhc-CCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCCcHHHHHH
Confidence 9999999998888889999999988 899999999999999999999999999988888899999889999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
+++.++..++|||++|||+++.|+++++++||++|++|++|+.+.|||++..+.+|++||.||||||+.||.+++.+|||
T Consensus 199 v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~~~~~~y~ 278 (361)
T 3khj_A 199 CSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYF 278 (361)
T ss_dssp HHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC------------------
T ss_pred HHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHhccchhhhh
Confidence 99888777899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred ccc--cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCccee
Q 010640 423 GDK--AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVS 499 (505)
Q Consensus 423 ~~~--~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 499 (505)
++. .+..++||+++++||+|++++++.+|.++||++|+|+|++||+|||++ ++|+++|+++++||||||+..
T Consensus 279 ~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~e~~~h~~~~ 352 (361)
T 3khj_A 279 QEKRPENKMVPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK-----SSYVEITTSGLRESHVHDVEI 352 (361)
T ss_dssp ---------------CEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH-----CCEEECCC-------------
T ss_pred cccccccccCCCccEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCccHHHHHhC-----CeEEEEccchhhcCCCCCccc
Confidence 864 456799999999999999999999999999999999999999999999 699999999999999999875
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-59 Score=468.47 Aligned_cols=327 Identities=31% Similarity=0.473 Sum_probs=280.8
Q ss_pred CCcccceeecCCCCCCCC-CCee--eeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPI-DAVS--LSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVV 99 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~-~~~~--~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~ 99 (505)
+|+||||.|+|+++...+ +++| +.|+| +++++++|+++|||+++++.+|++++++.||+|+++.+++++++.+.++
T Consensus 7 ~~~fddv~l~P~~~~~~~r~~vd~~~~t~l-~g~~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~~~s~ee~~~~i~ 85 (361)
T 3r2g_A 7 AITFDDVLLVPSYNHHESRRVVETTSTDRL-GKLTLNLPVISANMDTITESNMANFMHSKGAMGALHRFMTIEENIQEFK 85 (361)
T ss_dssp CCCGGGEEECCCCCCSCTTCCCCCCEECTT-SSCEESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCSCSCHHHHHHHHH
T ss_pred ccccceEEEECCCCCCCccccccceeeEEE-CCEEcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHh
Confidence 799999999999998877 6754 55688 7999999999999999999999999999999999999988888776665
Q ss_pred hhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEe
Q 010640 100 SAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSV 179 (505)
Q Consensus 100 ~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v 179 (505)
+++...
T Consensus 86 ~~~~~~-------------------------------------------------------------------------- 91 (361)
T 3r2g_A 86 KCKGPV-------------------------------------------------------------------------- 91 (361)
T ss_dssp TCCSCC--------------------------------------------------------------------------
T ss_pred hcceEE--------------------------------------------------------------------------
Confidence 332100
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
++.++..+...+.++.++++
T Consensus 92 ------------------------------------------------------------~~~~g~~~~~~e~~~~a~~a 111 (361)
T 3r2g_A 92 ------------------------------------------------------------FVSVGCTENELQRAEALRDA 111 (361)
T ss_dssp ------------------------------------------------------------BEEECSSHHHHHHHHHHHHT
T ss_pred ------------------------------------------------------------EEEcCCCHHHHHHHHHHHHc
Confidence 01122233466788999999
Q ss_pred CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHH
Q 010640 260 GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATA 339 (505)
Q Consensus 260 Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~ 339 (505)
|+|++++|.++|++..+++.++++|+.+|+++|++|++.|.++|+.+.++|+|+|+|++++|+.|.++...+++.|++.+
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~a 191 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTC 191 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHH
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHH
Confidence 99999999999988888999999999988899999999999999999999999999998888888888888899999888
Q ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceee-cCeEeeeecccCcHHHHhcccc
Q 010640 340 VYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQ-NGRRVKKYRGMGSLEAMTKGSD 418 (505)
Q Consensus 340 l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~-~~~~~k~~~g~~s~~~~~~~~~ 418 (505)
+.++.+.+ . |||++|||+++.|++|||++|||+|++|++|+.+.|||++..++ ||++||.||||||. +.
T Consensus 192 I~~~~~~~---~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~------~~ 261 (361)
T 3r2g_A 192 IQDCSRAD---R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASR------EA 261 (361)
T ss_dssp HHHHTTSS---S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHH------HH
T ss_pred HHHHHHhC---C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCc------ch
Confidence 87775432 2 99999999999999999999999999999999999999999999 99999999999993 35
Q ss_pred ccccccc-cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCcc
Q 010640 419 QRYLGDK-AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGL 497 (505)
Q Consensus 419 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~ 497 (505)
+|||++. ++.+++||+++++|++|++++++.+|.++||++|+|+|++||+||+++ ++|+++|++|++||||||+
T Consensus 262 ~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~~-----~~~~~~~~~~~~e~~~h~~ 336 (361)
T 3r2g_A 262 QEAFLGQMHEWKTAEGVATEVPFKENPDGIIADIIGGLRSGLTYAGADSISELQRK-----LNYVIVTQAGRIESLPHKL 336 (361)
T ss_dssp HHHHTTCCSTTCCSCCCCEEEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHT-----CCEEECCSTTC--------
T ss_pred hhhhhccccccccCCcceeecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhC-----CeEEEEccchhhccCCccc
Confidence 7899764 455699999999999999999999999999999999999999999999 6999999999999999998
Q ss_pred ee
Q 010640 498 VS 499 (505)
Q Consensus 498 ~~ 499 (505)
..
T Consensus 337 ~~ 338 (361)
T 3r2g_A 337 LE 338 (361)
T ss_dssp --
T ss_pred cc
Confidence 64
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=400.80 Aligned_cols=322 Identities=30% Similarity=0.437 Sum_probs=279.7
Q ss_pred CCcccceeecCCCCCCCC-CCeeeeeeec----CcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPI-DAVSLSTRLT----RNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARL 97 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~-~~~~~~~~lt----~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~ 97 (505)
.++|||+.|+|.++.+.+ +++++.++|+ +++.+.+|++++||+..++.+|++++++.||+|+++.+++++++...
T Consensus 19 ~~~fddv~l~p~~~~~~~~~~vdl~t~l~~~~~~~~~l~~PIi~ApM~~~~~~~lA~Ava~~Gglg~i~~~~s~e~~~~~ 98 (351)
T 2c6q_A 19 SLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQTYSGVPIIAANMDTVGTFEMAKVLCKFSLFTAVHKHYSLVQWQEF 98 (351)
T ss_dssp CCCGGGEEECCCCBCCCCGGGCBCCEEEECTTTCCEEEECCEEECSSTTTSCHHHHHHHHHTTCEEECCTTCCHHHHHHH
T ss_pred CCCcceEEEECCCCCCCccccceeEEEeccccCcCccccCCEEECCCCCCCcHHHHHHHHHCCCEEEEcCCCCHHHHHHH
Confidence 799999999999988777 7999999998 78999999999999999999999999999999999999888887665
Q ss_pred HHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCce
Q 010640 98 VVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 98 v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~ 177 (505)
+++ +| . ... +
T Consensus 99 i~~----------~p-------------------------------~------------------------~l~---~-- 108 (351)
T 2c6q_A 99 AGQ----------NP-------------------------------D------------------------CLE---H-- 108 (351)
T ss_dssp HHH----------CG-------------------------------G------------------------GCT---T--
T ss_pred Hhh----------Cc-------------------------------h------------------------hhh---e--
Confidence 432 22 0 000 0
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++..+...+..++++.++
T Consensus 109 -------------------------------------------------------------v~~~~g~~~~~~~~~~~l~ 127 (351)
T 2c6q_A 109 -------------------------------------------------------------LAASSGTGSSDFEQLEQIL 127 (351)
T ss_dssp -------------------------------------------------------------EEEEECSSHHHHHHHHHHH
T ss_pred -------------------------------------------------------------eEeecCCChHHHHHHHHHH
Confidence 0001111222346677777
Q ss_pred Hc--CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC
Q 010640 258 KA--GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
Q Consensus 258 ea--Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p 335 (505)
+. |+++++++.++|++..+++.++++++.+|++||++|++.+.++|+.+.++|+|+|+|++|+|+++.++.+.+|+.|
T Consensus 128 ~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 128 EAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYP 207 (351)
T ss_dssp HHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCC
T ss_pred hccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCcc
Confidence 76 9999999988888878899999999998889999999999999999999999999999888888888888999999
Q ss_pred hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhc
Q 010640 336 QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK 415 (505)
Q Consensus 336 ~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~ 415 (505)
++.++.++.+.++..++|||++|||+++.|++|||++||++|++|++|+.|.||+++..+++|++||.||||+|.++|..
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~~~g~~~~~a~~~ 287 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKK 287 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEEEECTTBHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeeeccccccHhhhhc
Confidence 99999999988877789999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --cccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccc
Q 010640 416 --GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGA 487 (505)
Q Consensus 416 --~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~ 487 (505)
++.+||+ .++|+++.+||+|++.+.+++|.++||++|+|+|++|++||+++ ..|+++|++
T Consensus 288 ~~g~~~~~~-------~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~-----~~~v~~~~~ 349 (351)
T 2c6q_A 288 YAGGVAEYR-------ASEGKTVEVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRR-----TTFIRVTQQ 349 (351)
T ss_dssp HSSSCCTTC-------CCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHH-----CCEEEC---
T ss_pred ccccccccc-------cccceEEEeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhC-----CcEEEEecC
Confidence 5556665 35899999999999999999999999999999999999999998 699999976
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=412.69 Aligned_cols=393 Identities=36% Similarity=0.544 Sum_probs=274.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+++|||+.|+|+++.+.++++++.++|++++.+..|++++||+.+++.+++.++++.||+|+++..++++++...+.+++
T Consensus 9 ~~~fd~v~l~p~~~~~~~~~vdlst~l~~g~~l~~Pii~Apm~~~~~~ela~a~a~aGglg~i~~~~s~e~~~~~~~~~~ 88 (404)
T 1eep_A 9 ALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVK 88 (404)
T ss_dssp CCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHH
T ss_pred CCCcccEEEccCCCCcCccccccceeccCCcccCCCEEeCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHH
Confidence 79999999999999888889999999998899999999999999999999999999999999998889988887776655
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+... .+ |+++.+|+.+.. . ++.+....
T Consensus 89 ~~~~-------------------------------------~~---g~~~~~~~~~~~------~-------~l~~~~~~ 115 (404)
T 1eep_A 89 TYKF-------------------------------------QK---TINTNGDTNEQK------P-------EIFTAKQH 115 (404)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred hhcc-------------------------------------CC---Cceecccccccc------c-------cccccCCC
Confidence 4321 01 334444432110 0 11111111
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
..+++ +.+++.....++.. .++..+++.++++++..++..+.++.++++|+|
T Consensus 116 ~~~~~-------------------------~~~~~~~~~~~p~~---~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~G~d 167 (404)
T 1eep_A 116 LEKSD-------------------------AYKNAEHKEDFPNA---CKDLNNKLRVGAAVSIDIDTIERVEELVKAHVD 167 (404)
T ss_dssp ---------------------------------------CCTTC---CBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCS
T ss_pred CCHHH-------------------------HHHHHHHhhhcchh---hhhcccCceEEEEeCCChhHHHHHHHHHHCCCC
Confidence 11111 01111111122221 233445566677776555678888899999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
++.++.+++++...++.++++++.++++||+++++.+.+.++.+.++|+|+|.++.++|.++.++...+||.|++.++.+
T Consensus 168 ~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~ 247 (404)
T 1eep_A 168 ILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICD 247 (404)
T ss_dssp EEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHH
Confidence 99998888877778999999999987899998899999999999999999999987777777777778888999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
+.+.++..++|||++|||+++.|+.+++++||++|++|++|+.+.||+++..|++|+.+|.||||++.++|.+++.++||
T Consensus 248 v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~~~g~~~~g~~~~~~ 327 (404)
T 1eep_A 248 VYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYF 327 (404)
T ss_dssp HHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC-------------------
T ss_pred HHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCCCCCHHHHhhccccchh
Confidence 98887767899999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred ccc---cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCccee
Q 010640 423 GDK---AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVS 499 (505)
Q Consensus 423 ~~~---~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 499 (505)
.+. ....+++|+++.+++++++.+++++|.++||++|.++|+++++||+++ ..|+++|+++++||||||+++
T Consensus 328 ~g~~~~~~~l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~-----~~~~~~~~~~~~e~~~~~~~~ 402 (404)
T 1eep_A 328 QLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN-----SKFVKISHSSLKESHPHDVFS 402 (404)
T ss_dssp -----------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS-----CCEEECCCC------------
T ss_pred cccccccccccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhc-----CcEEEEchhhhccCcCceeee
Confidence 743 234578999999999999999999999999999999999999999998 699999999999999999998
Q ss_pred cc
Q 010640 500 YE 501 (505)
Q Consensus 500 ~~ 501 (505)
|+
T Consensus 403 ~~ 404 (404)
T 1eep_A 403 IT 404 (404)
T ss_dssp --
T ss_pred cC
Confidence 74
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=338.13 Aligned_cols=317 Identities=26% Similarity=0.400 Sum_probs=240.4
Q ss_pred CCcccceeecCCCC-CCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhh
Q 010640 23 SYTYDDVIFLPHYI-DFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSA 101 (505)
Q Consensus 23 ~~~~~d~~l~p~~~-~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v 101 (505)
.++|||+.|+|.+. ....+++++.++|+ ++++..|++.|+|.+++..+++.++++.|++|++...+. +.....++
T Consensus 13 ~~~fd~v~l~p~~~~~~~~~~vdl~t~i~-g~~l~~Pi~~a~mag~s~~~la~a~~~~gg~g~~~~~~~-~~~~~~i~-- 88 (336)
T 1ypf_A 13 VFDYEDIQLIPAKCIVNSRSECDTTVTLG-KHKFKLPVVPANMQTIIDERIATYLAENNYFYIMHRFQP-EKRISFIR-- 88 (336)
T ss_dssp CCCGGGEEECCCCCCCSSGGGCBCCEEET-TEEESSSEEECSSTTTCCHHHHHHHHHTTCCCCCCCSSG-GGHHHHHH--
T ss_pred cCCcceEEEecccCCCCCcccCcceEEEC-CEEecCcEEECCCCCCChHHHHHHHHhCCCEEEecCCCC-HHHHHHHH--
Confidence 79999999999996 44557899999998 599999999999999999999988999999987664321 11011111
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecC
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~ 181 (505)
T Consensus 89 -------------------------------------------------------------------------------- 88 (336)
T 1ypf_A 89 -------------------------------------------------------------------------------- 88 (336)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC-
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG- 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG- 260 (505)
.+.+.+. .++++++..++..+.++.+.+.|
T Consensus 89 ---------~~~~~g~----------------------------------------~v~v~~g~~~~~~~~a~~~~~~g~ 119 (336)
T 1ypf_A 89 ---------DMQSRGL----------------------------------------IASISVGVKEDEYEFVQQLAAEHL 119 (336)
T ss_dssp ---------HHHHTTC----------------------------------------CCEEEECCSHHHHHHHHHHHHTTC
T ss_pred ---------HHHhcCC----------------------------------------eEEEeCCCCHHHHHHHHHHHhcCC
Confidence 1111110 11122333334556788888988
Q ss_pred -ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcC--hH
Q 010640 261 -VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRG--QA 337 (505)
Q Consensus 261 -ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p--~~ 337 (505)
++++.++.++|++...++.++++++.++..+++.|++.+.++|+.+.++|+|+|++++++|+.+.++...+++.| ++
T Consensus 120 ~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~ 199 (336)
T 1ypf_A 120 TPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQL 199 (336)
T ss_dssp CCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHH
Confidence 999999887787778899999999998667888788999999999999999999999888877766667788888 88
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGS 417 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~ 417 (505)
.++.++++. .++|||++|||+++.|++|||++||++|++|++|+.|.||+++..+++|++||.||||++..++.
T Consensus 200 ~~l~~v~~~---~~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~~~~g--- 273 (336)
T 1ypf_A 200 AALRWCAKA---ASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKG--- 273 (336)
T ss_dssp HHHHHHHHT---CSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC-----------------------
T ss_pred HHHHHHHHH---cCCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccchhhcc---
Confidence 888777654 47999999999999999999999999999999999999999999999999999999999876531
Q ss_pred cccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCc
Q 010640 418 DQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGG 493 (505)
Q Consensus 418 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 493 (505)
..++++|++..+|++|++.++++.|.++||++|.++|+++++||++. .|++++.+++.|+.
T Consensus 274 ---------~~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~~~i~el~~~------~~~~~~~~~~~~~~ 334 (336)
T 1ypf_A 274 ---------EKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGGTKLDSIRTV------DYVVVKNSIFNGDK 334 (336)
T ss_dssp ------------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTSSBGGGGGGC------CEEECSCCC-----
T ss_pred ---------CccccccceeeecccccHHHHHHHHHHHHHHHHHHhCcccHHHhCcC------CEEEEccccccCCC
Confidence 12358999999999999999999999999999999999999999764 89999999998865
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.98 E-value=4e-31 Score=273.88 Aligned_cols=322 Identities=22% Similarity=0.307 Sum_probs=225.2
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCC------CHHHHHH
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNC------TAADQAR 96 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~------~~~~~~~ 96 (505)
.++|||+.|+|+++.+.++++++++++ .++.+..|++.|||++++.+++++++++.|++|+++.++ .++...+
T Consensus 35 ~~~fd~v~l~p~~~~~~~~~vdlst~l-~g~~l~~Pii~Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~e 113 (393)
T 2qr6_A 35 TYSLDDISVVSSRRTRSSKDVDTTWHI-DAYKFDLPFMNHPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIA 113 (393)
T ss_dssp CCCGGGEEECCCSCCCCGGGCBCCEEE-TTEEESSSEEECCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHH
T ss_pred CCChhhEEEccCCCCCChhHCCceeEE-cccccCCCeEeCCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHH
Confidence 689999999998888888999999999 589999999999999999999999999999999998754 3333333
Q ss_pred HHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCc
Q 010640 97 LVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 97 ~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~ 176 (505)
++.++....+ .| .. ...+.+ .++.+
T Consensus 114 eia~~~~~~d----~~--~g------~~~~~q---------------------------------------~~~~~---- 138 (393)
T 2qr6_A 114 KVIAAYEEGD----QA--AA------TRTLQE---------------------------------------LHAAP---- 138 (393)
T ss_dssp HHHHHHHHHH----HH--HH------HHHHHH---------------------------------------HHHSC----
T ss_pred HHHHHHHhcC----CC--cc------chhhhh---------------------------------------ccccc----
Confidence 3332211000 00 00 000000 00000
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
.......+.++...+.+. .+.+.+. .....+.++.+
T Consensus 139 ---~d~~~~~~~i~~~~~~g~----------------------------------------~v~~~v~-~~~~~e~a~~~ 174 (393)
T 2qr6_A 139 ---LDTELLSERIAQVRDSGE----------------------------------------IVAVRVS-PQNVREIAPIV 174 (393)
T ss_dssp ---CCHHHHHHHHHHHHHTTS----------------------------------------CCEEEEC-TTTHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHhhcCC----------------------------------------eEEEEeC-CccHHHHHHHH
Confidence 000011122223332221 1112222 22356677777
Q ss_pred HHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccc
Q 010640 257 VKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCA 331 (505)
Q Consensus 257 ieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g 331 (505)
.+.|+|++.++... ..+...+..+.++++.+ ++||++|++.+.++++.+.++|+|+|+++.|+ +.++...+
T Consensus 175 ~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pvi~ggi~t~e~a~~~~~~Gad~i~vg~Gg---~~~~~~~~ 250 (393)
T 2qr6_A 175 IKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSL-DVPVIAGGVNDYTTALHMMRTGAVGIIVGGGE---NTNSLALG 250 (393)
T ss_dssp HHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHC-SSCEEEECCCSHHHHHHHHTTTCSEEEESCCS---CCHHHHTS
T ss_pred HHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhc-CCCEEECCcCCHHHHHHHHHcCCCEEEECCCc---ccccccCC
Confidence 88899999887532 12222455678888887 89999999999999999999999999997543 44567788
Q ss_pred cCcChHHHHHHHHHHH----hhcC---CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeee
Q 010640 332 VGRGQATAVYKVSSIA----AQSG---VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKY 404 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~----~~~~---ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~ 404 (505)
||.|++.++.++.+.+ .+.+ +|||++|||+++.|++|||++||++|++|++|+.+.||+++.. +
T Consensus 251 ~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~es~~~~~---------~ 321 (393)
T 2qr6_A 251 MEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGY---------F 321 (393)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTTCTTTTE---------E
T ss_pred CCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCCCCCceE---------E
Confidence 9999999999988763 2233 9999999999999999999999999999999999999999864 3
Q ss_pred cccCcHHHHhccccccccccccccccccceeeeecc----CCchhhHH----------HHHHHHHHHHhhccCCCCHHHH
Q 010640 405 RGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVAD----KGSVLKFI----------PYTMQAVKQGFQDLGASSLQSA 470 (505)
Q Consensus 405 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~----------~~l~~~l~~~m~~~G~~~~~~l 470 (505)
|||++... .+++|++++.+. .+.+.+++ .+|.++||++|+++|+++++||
T Consensus 322 ~g~~~~~~----------------~~~~Gv~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~el~~~m~~~G~~~i~el 385 (393)
T 2qr6_A 322 WPAVAAHP----------------RFPRGVVTESVDLDEAAPSLEQILHGPSTMPWGVENFEGGLKRALAKCGYTDLKSF 385 (393)
T ss_dssp CCGGGGCS----------------SSCCCCCEECC----CCCCHHHHHHCCCSCTTSSSCHHHHHHHHHHHHTCSBHHHH
T ss_pred EecccCcc----------------cCCCccccccccccccchhHHHHhccchhHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 68876421 245666555432 33344444 5889999999999999999999
Q ss_pred HHh
Q 010640 471 HDL 473 (505)
Q Consensus 471 ~~~ 473 (505)
++.
T Consensus 386 ~~~ 388 (393)
T 2qr6_A 386 QKV 388 (393)
T ss_dssp TTC
T ss_pred hhc
Confidence 874
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=209.29 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=131.4
Q ss_pred HHHHHHHcCccEEEEeCC--------CCCc--hhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEcc
Q 010640 252 RLEHLVKAGVNVVVLDSS--------QGNS--SFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 252 ~~~~lieaGad~I~i~~~--------~g~~--~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~ 318 (505)
..+.+...++|++.++.. .|+. ..+++.++++++.+ ++||++|++ .+.++|+.+.++|+|+|+|++
T Consensus 160 ~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~-~~PVivK~vg~g~s~e~A~~l~~aGad~I~V~g 238 (365)
T 3sr7_A 160 GLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKL-QLPFILKEVGFGMDVKTIQTAIDLGVKTVDISG 238 (365)
T ss_dssp HHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHC-CSCEEEEECSSCCCHHHHHHHHHHTCCEEECCC
T ss_pred HHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhh-CCCEEEEECCCCCCHHHHHHHHHcCCCEEEEeC
Confidence 333344568888877653 3433 35778999999987 899999988 799999999999999999987
Q ss_pred CCccee----ec-----ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCC
Q 010640 319 GSGSIC----TT-----QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEA 389 (505)
Q Consensus 319 g~g~~~----~~-----~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es 389 (505)
++|+.. .. ..+.+||.|++.++.++.... .++|||++|||+++.|++|||++||++|++|++|+.+..+
T Consensus 239 ~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~--~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~ 316 (365)
T 3sr7_A 239 RGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLM--DKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQ 316 (365)
T ss_dssp BC--------------CGGGTTCSCBHHHHHHHHGGGT--TTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHH
T ss_pred CCCcccchhhccccccccccccccccHHHHHHHHHHhc--CCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh
Confidence 765432 11 234589999999998764322 2699999999999999999999999999999998632100
Q ss_pred CccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHH
Q 010640 390 PGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQS 469 (505)
Q Consensus 390 ~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~ 469 (505)
.|. ..+.+.++.|..+|+..|.++|++++.|
T Consensus 317 ------------------------------------------~G~-------~~v~~~l~~l~~eL~~~m~~~G~~si~e 347 (365)
T 3sr7_A 317 ------------------------------------------HSV-------HEVIAIVNGWKEDLRLIMCALNCQTIAE 347 (365)
T ss_dssp ------------------------------------------SCH-------HHHHHHHHHHHHHHHHHHHHTTCSSTGG
T ss_pred ------------------------------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCcCHHH
Confidence 111 1477899999999999999999999999
Q ss_pred HHHh
Q 010640 470 AHDL 473 (505)
Q Consensus 470 l~~~ 473 (505)
|++.
T Consensus 348 L~~~ 351 (365)
T 3sr7_A 348 LRNV 351 (365)
T ss_dssp GGGC
T ss_pred hccC
Confidence 9875
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-22 Score=201.09 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcceee------------------cccccccC
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSICT------------------TQEVCAVG 333 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~~~------------------~~~~~g~g 333 (505)
.+++.++++++.+ ++||++|.+ .++++|+.+.++|+|+|+|++++|+ ++ ...+.+||
T Consensus 174 ~~~~~i~~i~~~~-~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GGt-~~~~iE~~R~~~~~~~~~~~~~~~~~~g 251 (368)
T 3vkj_A 174 YALEKLRDISKEL-SVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGGT-NWIAIEMIRDIRRGNWKAESAKNFLDWG 251 (368)
T ss_dssp HHHHHHHHHHTTC-SSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTSB-CHHHHHHHHHHHTTCTHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCCC-cccchhhhhcccccccchhhcccccccc
Confidence 4789999999987 899999877 6999999999999999999977663 11 12357899
Q ss_pred cChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHH
Q 010640 334 RGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAM 413 (505)
Q Consensus 334 ~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~ 413 (505)
.|+..++.++++... ++|||++|||+++.|++|||++||++|++|++|+.+. .
T Consensus 252 ~pt~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~-------------------------~ 304 (368)
T 3vkj_A 252 VPTAASIMEVRYSVP--DSFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSA-------------------------I 304 (368)
T ss_dssp CBHHHHHHHHHHHST--TCEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHH-------------------------H
T ss_pred ccHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHH-------------------------h
Confidence 999999998887653 4999999999999999999999999999999986311 0
Q ss_pred hccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 414 TKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.|. ..+.+.++.|..+|+..|.++|++++.||++.
T Consensus 305 ------------------~G~-------~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~ 339 (368)
T 3vkj_A 305 ------------------EGK-------ESLEQFFRKIIFELKAAMMLTGSKDVDALKKT 339 (368)
T ss_dssp ------------------HCH-------HHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTC
T ss_pred ------------------cCh-------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhccC
Confidence 111 14778999999999999999999999999864
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-20 Score=191.02 Aligned_cols=143 Identities=19% Similarity=0.254 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
...++.++++++.+ ++||++|++.+.++|+.+.++|+|+|.|++++|. . ..++.+++.++.++++.... ++|
T Consensus 215 ~~~~~~i~~lr~~~-~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr-----~-~~~g~~~~~~l~~v~~~v~~-~ip 286 (368)
T 2nli_A 215 KISPRDIEEIAGHS-GLPVFVKGIQHPEDADMAIKRGASGIWVSNHGAR-----Q-LYEAPGSFDTLPAIAERVNK-RVP 286 (368)
T ss_dssp BCCHHHHHHHHHHS-SSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGT-----S-CSSCCCHHHHHHHHHHHHTT-SSC
T ss_pred hhhHHHHHHHHHHc-CCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcC-----C-CCCCCChHHHHHHHHHHhCC-CCe
Confidence 34567799999987 8999999999999999999999999999977652 2 34678999999998876542 699
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQG 433 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g 433 (505)
||++|||+++.|++|+|++||++|++|++|+. +++. .|
T Consensus 287 Via~GGI~~g~D~~kalalGAd~V~iGr~~l~--------------------~~~~----------------------~G 324 (368)
T 2nli_A 287 IVFDSGVRRGEHVAKALASGADVVALGRPVLF--------------------GLAL----------------------GG 324 (368)
T ss_dssp EEECSSCCSHHHHHHHHHTTCSEEEECHHHHH--------------------HHHH----------------------HH
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHHh----------------------cC
Confidence 99999999999999999999999999999863 1110 11
Q ss_pred eeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 434 VVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.+ ++.+.++.|.++|+..|.++|++++.+|++.
T Consensus 325 ~~-------gv~~~l~~l~~el~~~m~~~G~~~i~~l~~~ 357 (368)
T 2nli_A 325 WQ-------GAYSVLDYFQKDLTRVMQLTGSQNVEDLKGL 357 (368)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHTCSSHHHHHTC
T ss_pred hH-------HHHHHHHHHHHHHHHHHHHhCCcCHHHhccc
Confidence 11 4779999999999999999999999999986
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.1e-20 Score=183.95 Aligned_cols=144 Identities=20% Similarity=0.274 Sum_probs=119.6
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
...++.++++++.+ ++||++|.+.+.++|+.+.++|+|+|++++++|.. .. .+.+++..+.++.+... .++|
T Consensus 203 ~~~w~~i~~lr~~~-~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~-----~d-~~~~~~~~L~~i~~av~-~~ip 274 (352)
T 3sgz_A 203 SFCWNDLSLLQSIT-RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQ-----LD-EVSASIDALREVVAAVK-GKIE 274 (352)
T ss_dssp TCCHHHHHHHHHHC-CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS-----SC-SSCCHHHHHHHHHHHHT-TSSE
T ss_pred CCCHHHHHHHHHhc-CCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCc-----cC-CCccHHHHHHHHHHHhC-CCCe
Confidence 34578899999987 89999999999999999999999999999876632 22 35688899988877654 2699
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQG 433 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g 433 (505)
||++|||+++.|++|||++||++|++|++|+. +++. .|
T Consensus 275 Via~GGI~~g~Dv~kaLalGA~aV~iGr~~l~--------------------~l~~----------------------~G 312 (352)
T 3sgz_A 275 VYMDGGVRTGTDVLKALALGARCIFLGRPILW--------------------GLAC----------------------KG 312 (352)
T ss_dssp EEEESSCCSHHHHHHHHHTTCSEEEESHHHHH--------------------HHHH----------------------HH
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHHh----------------------cC
Confidence 99999999999999999999999999999862 1110 11
Q ss_pred eeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 434 VVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
. .++.+.++.|..+|+..|.++|++++.||++..
T Consensus 313 ~-------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~ 346 (352)
T 3sgz_A 313 E-------DGVKEVLDILTAELHRCMTLSGCQSVAEISPDL 346 (352)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGG
T ss_pred c-------HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhc
Confidence 1 147799999999999999999999999998653
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=183.52 Aligned_cols=158 Identities=18% Similarity=0.276 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ ++||++|++.+.++++.+.++|+|+|++++++|.. .+++.|++..+.++++.. ++|||
T Consensus 213 ~~~~i~~i~~~~-~~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~------~d~~~~~~~~l~~v~~~~---~~pVi 282 (380)
T 1p4c_A 213 NWEALRWLRDLW-PHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQ------LDCAISPMEVLAQSVAKT---GKPVL 282 (380)
T ss_dssp CHHHHHHHHHHC-CSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTS------CTTCCCGGGTHHHHHHHH---CSCEE
T ss_pred cHHHHHHHHHhc-CCCEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCc------CCCCcCHHHHHHHHHHHc---CCeEE
Confidence 468899999988 89999999999999999999999999998765531 245678888888776654 46999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
++|||+++.|+.|++++||++|++|++|+. |++ + .|.
T Consensus 283 a~GGI~~~~dv~kal~~GAdaV~iGr~~l~--------------------~~~---~-------------------~g~- 319 (380)
T 1p4c_A 283 IDSGFRRGSDIVKALALGAEAVLLGRATLY--------------------GLA---A-------------------RGE- 319 (380)
T ss_dssp ECSSCCSHHHHHHHHHTTCSCEEESHHHHH--------------------HHH---H-------------------HHH-
T ss_pred EECCCCCHHHHHHHHHhCCcHhhehHHHHH--------------------HHH---h-------------------cCH-
Confidence 999999999999999999999999999852 110 0 111
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCcceecc
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYE 501 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 501 (505)
.++.+.++.|.++|+..|.++|++++.||++.. +. .++..|+++||+....
T Consensus 320 ------~~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~-------l~--~~g~~~~~~~d~~~~~ 370 (380)
T 1p4c_A 320 ------TGVDEVLTLLKADIDRTLAQIGCPDITSLSPDY-------LQ--NEGVTNTAPVDHLIGK 370 (380)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGG-------EE--EC--------------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCe-------EE--ecccccccCccccccc
Confidence 147899999999999999999999999999863 22 2567799999987654
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-19 Score=181.98 Aligned_cols=168 Identities=21% Similarity=0.254 Sum_probs=125.7
Q ss_pred HHHHHcCccEEEEeCCCC--------Cc--hhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCC
Q 010640 254 EHLVKAGVNVVVLDSSQG--------NS--SFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 254 ~~lieaGad~I~i~~~~g--------~~--~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
+.+.+.|+|++.++.++. +. ..+++.++++++.+ ++||++|.+ .+.+.++.+.++|+|+|.+++++
T Consensus 134 ~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~-~~Pv~vK~~~~~~~~~~a~~a~~~Gad~I~v~~~g 212 (349)
T 1p0k_A 134 EAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYG 212 (349)
T ss_dssp HHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC--
T ss_pred HHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEcCCC
Confidence 334456888888876532 11 13678899999887 799999754 78999999999999999998765
Q ss_pred cce----eeccc------ccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCC
Q 010640 321 GSI----CTTQE------VCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAP 390 (505)
Q Consensus 321 g~~----~~~~~------~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~ 390 (505)
|+. ...+. ...+|.++...+.++++.. .++|||++|||+++.|+.+++++|||+|++|++|+...++
T Consensus 213 gt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~- 289 (349)
T 1p0k_A 213 GTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTD- 289 (349)
T ss_dssp -------------CCGGGGTTCSCCHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHH-
T ss_pred CcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhh-
Confidence 531 11122 2467788888888776643 2699999999999999999999999999999998632110
Q ss_pred ccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHH
Q 010640 391 GAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSA 470 (505)
Q Consensus 391 ~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l 470 (505)
.|.+ .+.+.++.|..+|+..|.++|++++.||
T Consensus 290 -----------------------------------------~g~~-------~~~~~~~~~~~~l~~~m~~~G~~~i~el 321 (349)
T 1p0k_A 290 -----------------------------------------SGEE-------GLLEEIQLILEELKLIMTVLGARTIADL 321 (349)
T ss_dssp -----------------------------------------HHHH-------HHHHHHHHHHHHHHHHHHHHTCCBHHHH
T ss_pred -----------------------------------------cCHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 1111 3678899999999999999999999999
Q ss_pred HHh
Q 010640 471 HDL 473 (505)
Q Consensus 471 ~~~ 473 (505)
++.
T Consensus 322 ~~~ 324 (349)
T 1p0k_A 322 QKA 324 (349)
T ss_dssp TTC
T ss_pred hhC
Confidence 875
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=184.83 Aligned_cols=144 Identities=19% Similarity=0.300 Sum_probs=118.5
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcE
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPV 354 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipv 354 (505)
..++.++++++.+ ++||++|.+.+.++|+.+.++|+|+|++++++|. . ..++.|++.++.++++... .++||
T Consensus 239 ~~~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr-----~-~~~g~~~~~~l~~v~~av~-~~ipV 310 (392)
T 2nzl_A 239 ISWEDIKWLRRLT-SLPIVAKGILRGDDAREAVKHGLNGILVSNHGAR-----Q-LDGVPATIDVLPEIVEAVE-GKVEV 310 (392)
T ss_dssp CCHHHHHHHC--C-CSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGT-----S-STTCCCHHHHHHHHHHHHT-TSSEE
T ss_pred HHHHHHHHHHHhh-CCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCC-----c-CCCCcChHHHHHHHHHHcC-CCCEE
Confidence 3467789999887 7999999999999999999999999999876652 1 3467899999999887654 25999
Q ss_pred EecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccce
Q 010640 355 IADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGV 434 (505)
Q Consensus 355 Ia~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~ 434 (505)
|++|||+++.|++|||++||++|++|++|+. +++. .|.
T Consensus 311 ia~GGI~~g~Dv~kalalGAd~V~iGr~~l~--------------------~~~~----------------------~g~ 348 (392)
T 2nzl_A 311 FLDGGVRKGTDVLKALALGAKAVFVGRPIVW--------------------GLAF----------------------QGE 348 (392)
T ss_dssp EECSSCCSHHHHHHHHHTTCSEEEECHHHHH--------------------HHHH----------------------HHH
T ss_pred EEECCCCCHHHHHHHHHhCCCeeEECHHHHH--------------------HHHh----------------------cCh
Confidence 9999999999999999999999999999862 1110 011
Q ss_pred eeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhh
Q 010640 435 VGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLR 475 (505)
Q Consensus 435 ~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~ 475 (505)
.++.+.++.|.++|+..|.++|++++.||++..+
T Consensus 349 -------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~l 382 (392)
T 2nzl_A 349 -------KGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 382 (392)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGGB
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhhh
Confidence 1477999999999999999999999999988753
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=183.92 Aligned_cols=143 Identities=23% Similarity=0.282 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh----cC
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ----SG 351 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~----~~ 351 (505)
.++.++++++.+ ++||++|++.+.++|+.+.++|+|+|+|++++|. .. ..+.+++..+.++.+.+.. .+
T Consensus 331 ~~~~i~~lr~~~-~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~-----~~-d~~~~~~~~l~~v~~~v~~~~~~~~ 403 (511)
T 1kbi_A 331 TWKDIEELKKKT-KLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGR-----QL-DFSRAPIEVLAETMPILEQRNLKDK 403 (511)
T ss_dssp CHHHHHHHHHHC-SSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTT-----SS-TTCCCHHHHHHHHHHHHHTTTCBTT
T ss_pred HHHHHHHHHHHh-CCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCc-----cC-CCCCchHHHHHHHHHHHHhhccCCC
Confidence 367799999987 8999999999999999999999999999987664 12 2356788888888887642 26
Q ss_pred CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccc
Q 010640 352 VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIA 431 (505)
Q Consensus 352 ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~ 431 (505)
+|||++|||+++.|++|||++||++|++|++|+. +++.
T Consensus 404 ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~--------------------~~~~---------------------- 441 (511)
T 1kbi_A 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLY--------------------ANSC---------------------- 441 (511)
T ss_dssp BEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH--------------------HHHH----------------------
T ss_pred cEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH--------------------HHHh----------------------
Confidence 9999999999999999999999999999999863 1110
Q ss_pred cceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 432 QGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 432 ~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
.|. .++.+.++.|..+|+..|.++|++++.+|++.+
T Consensus 442 ~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~ 477 (511)
T 1kbi_A 442 YGR-------NGVEKAIEILRDEIEMSMRLLGVTSIAELKPDL 477 (511)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGG
T ss_pred cCh-------HHHHHHHHHHHHHHHHHHHHhCCCcHHHHhHHH
Confidence 011 147789999999999999999999999999875
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=178.67 Aligned_cols=145 Identities=20% Similarity=0.272 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcce----eeccc--------ccccCcChHHH
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSI----CTTQE--------VCAVGRGQATA 339 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~----~~~~~--------~~g~g~p~~~~ 339 (505)
.+++.++++++ + ++||++|.+ .+.++++.+.++|+|+|++++++|+. ...+. +..+|.|+..+
T Consensus 169 ~~~~~i~~vr~-~-~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 246 (332)
T 1vcf_A 169 GLVERLAELLP-L-PFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARA 246 (332)
T ss_dssp THHHHHHHHCS-C-SSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHH
T ss_pred HHHHHHHHHHc-C-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHH
Confidence 36788999999 7 899999988 79999999999999999998766531 00021 14578899988
Q ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccc
Q 010640 340 VYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQ 419 (505)
Q Consensus 340 l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~ 419 (505)
+.++++... ++|||++|||+++.|++|+|++|||+|++|++|+.+. +
T Consensus 247 l~~v~~~~~--~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~-~------------------------------ 293 (332)
T 1vcf_A 247 ILEVREVLP--HLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA-L------------------------------ 293 (332)
T ss_dssp HHHHHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH-T------------------------------
T ss_pred HHHHHHhcC--CCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHH-h------------------------------
Confidence 888876542 5999999999999999999999999999999997321 0
Q ss_pred cccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 420 RYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 420 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.|.+ ++.++++.|..+|+..|.++|++++.||++.
T Consensus 294 ------------~G~~-------gv~~~~~~l~~el~~~m~~~G~~~i~el~~~ 328 (332)
T 1vcf_A 294 ------------EGAE-------RVAAWIGDYLEELRTALFAIGARNPKEARGR 328 (332)
T ss_dssp ------------TCHH-------HHHHHHHHHHHHHHHHHHHHTCSSGGGGTTC
T ss_pred ------------ccHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHHhhh
Confidence 1111 4779999999999999999999999999875
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=177.25 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ ++|+++|.+.+.++++.+.++|+|+|.+++++|. .. .++.+++..+.++.+.... ++|||
T Consensus 213 ~~~~i~~l~~~~-~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr-----~~-~~~~~~~~~l~~v~~~~~~-~ipvi 284 (370)
T 1gox_A 213 SWKDVAWLQTIT-SLPILVKGVITAEDARLAVQHGAAGIIVSNHGAR-----QL-DYVPATIMALEEVVKAAQG-RIPVF 284 (370)
T ss_dssp CHHHHHHHHHHC-CSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGT-----SS-TTCCCHHHHHHHHHHHTTT-SSCEE
T ss_pred hHHHHHHHHHHh-CCCEEEEecCCHHHHHHHHHcCCCEEEECCCCCc-----cC-CCcccHHHHHHHHHHHhCC-CCEEE
Confidence 456788999987 8999999999999999999999999999876652 22 3457888888888776432 59999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
++|||+++.|+.|++++||++|++|++|+. +++. .|.+
T Consensus 285 a~GGI~~~~D~~k~l~~GAdaV~iGr~~l~--------------------~~~~----------------------~G~~ 322 (370)
T 1gox_A 285 LDGGVRRGTDVFKALALGAAGVFIGRPVVF--------------------SLAA----------------------EGEA 322 (370)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEECHHHHH--------------------HHHH----------------------HHHH
T ss_pred EECCCCCHHHHHHHHHcCCCEEeecHHHHH--------------------HHhh----------------------ccHH
Confidence 999999999999999999999999999852 2110 1111
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
++.+.++.|.++|+..|.++|++++.||++..
T Consensus 323 -------gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~ 354 (370)
T 1gox_A 323 -------GVKKVLQMMRDEFELTMALSGCRSLKEISRSH 354 (370)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGG
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcc
Confidence 47799999999999999999999999999874
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-17 Score=163.67 Aligned_cols=209 Identities=24% Similarity=0.321 Sum_probs=154.9
Q ss_pred CeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc-CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCC
Q 010640 42 AVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH-SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPD 120 (505)
Q Consensus 42 ~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~-~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~ 120 (505)
.+.+.+++++.+.+++|+|++||.+++..+++.++++.|++|++. ...+++...+.++++++..+ .| +.+
T Consensus 12 ~~~~~t~~~~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~----~p--~gV--- 82 (326)
T 3bo9_A 12 HMTVRTRVTDLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTD----KP--FGV--- 82 (326)
T ss_dssp CCCCCCHHHHHHTCSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCS----SC--EEE---
T ss_pred ceeecchhHHhcCCCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcC----CC--EEE---
Confidence 456788999999999999999999999999999999999999884 44567666666665544321 12 000
Q ss_pred CCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCee
Q 010640 121 GCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFV 200 (505)
Q Consensus 121 ~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~l 200 (505)
T Consensus 83 -------------------------------------------------------------------------------- 82 (326)
T 3bo9_A 83 -------------------------------------------------------------------------------- 82 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHH
Q 010640 201 VLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMI 280 (505)
Q Consensus 201 pVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i 280 (505)
+... ..+...+.++.+.+.|++++.++.. .+ .+.+
T Consensus 83 ---------------------------------------nl~~-~~~~~~~~~~~~~~~g~d~V~l~~g--~p---~~~~ 117 (326)
T 3bo9_A 83 ---------------------------------------NIIL-VSPWADDLVKVCIEEKVPVVTFGAG--NP---TKYI 117 (326)
T ss_dssp ---------------------------------------EEET-TSTTHHHHHHHHHHTTCSEEEEESS--CC---HHHH
T ss_pred ---------------------------------------EEec-cCCCHHHHHHHHHHCCCCEEEECCC--Cc---HHHH
Confidence 0000 0112456778888999999988543 33 3456
Q ss_pred HHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCC
Q 010640 281 KYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG 359 (505)
Q Consensus 281 ~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GG 359 (505)
+++++. +++++. .+.+.+.++.+.++|+|+|.+. ...|+... ..+++..+.++.+ ..++|||++||
T Consensus 118 ~~l~~~--g~~v~~-~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~G-------~~~~~~ll~~i~~---~~~iPviaaGG 184 (326)
T 3bo9_A 118 RELKEN--GTKVIP-VVASDSLARMVERAGADAVIAEGMESGGHIG-------EVTTFVLVNKVSR---SVNIPVIAAGG 184 (326)
T ss_dssp HHHHHT--TCEEEE-EESSHHHHHHHHHTTCSCEEEECTTSSEECC-------SSCHHHHHHHHHH---HCSSCEEEESS
T ss_pred HHHHHc--CCcEEE-EcCCHHHHHHHHHcCCCEEEEECCCCCccCC-------CccHHHHHHHHHH---HcCCCEEEECC
Confidence 666665 678776 6889999999999999999984 22232211 1355666655544 35799999999
Q ss_pred CCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeec
Q 010640 360 ISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 360 I~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
|.++.|+.+++++||++|++||+|+.+.||+++..+++
T Consensus 185 I~~~~dv~~al~~GA~gV~vGs~~~~~~e~~~~~~~k~ 222 (326)
T 3bo9_A 185 IADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKE 222 (326)
T ss_dssp CCSHHHHHHHHHHTCSEEEESHHHHTBSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHhCCCEEEechHHHcCccccccHHHHH
Confidence 99999999999999999999999999999998877653
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-16 Score=155.47 Aligned_cols=132 Identities=22% Similarity=0.296 Sum_probs=101.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~ 327 (505)
..+.++.+.+.|++++.++.. .+ .+.++++++. +++++. .+.+.++++.+.++|+|+|.+. .++|++....
T Consensus 85 ~~~~~~~~~~~g~d~V~~~~g--~p---~~~~~~l~~~--gi~vi~-~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~ 156 (328)
T 2gjl_A 85 YAEYRAAIIEAGIRVVETAGN--DP---GEHIAEFRRH--GVKVIH-KCTAVRHALKAERLGVDAVSIDGFECAGHPGED 156 (328)
T ss_dssp HHHHHHHHHHTTCCEEEEEES--CC---HHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTTCSEEEEECTTCSBCCCSS
T ss_pred HHHHHHHHHhcCCCEEEEcCC--Cc---HHHHHHHHHc--CCCEEe-eCCCHHHHHHHHHcCCCEEEEECCCCCcCCCCc
Confidence 557788888999999988653 33 3566777776 788875 6889999999999999999984 3333222111
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceee
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQ 396 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~ 396 (505)
..++...+.+++ +..++|||++|||.++.|+.+++++||++|++||+|+.+.||+++..++
T Consensus 157 -----~~~~~~~l~~v~---~~~~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e~~~~~~~k 217 (328)
T 2gjl_A 157 -----DIPGLVLLPAAA---NRLRVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVK 217 (328)
T ss_dssp -----CCCHHHHHHHHH---TTCCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSSSCSCHHHH
T ss_pred -----cccHHHHHHHHH---HhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCccccccHHHH
Confidence 134555554443 3457999999999999999999999999999999999999998876665
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.7e-17 Score=147.18 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=102.0
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-------------------
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------------------- 160 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------------------- 160 (505)
.+.++|.+++ +++++++|+.+|+++|.+ ++ +||+|+ +|+++|+||.+|+....
T Consensus 19 ~V~diM~~~v--~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T 4esy_A 19 PIRDILTSPV--VTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAP 93 (170)
T ss_dssp BGGGGCCSCC--CCEETTSBHHHHHHHHHHTTCSEEEEECT---TSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHH
T ss_pred CHHHhcCCCC--cEECCcCcHHHHHHHHHHcCCeEEEEEcC---CccEEEEEEHHHHHHHHhhccccchhhhhhhccchh
Confidence 4667898888 999999999999999998 77 999998 89999999999985211
Q ss_pred --------ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 161 --------DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 161 --------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
....++.++|++ +++++.+++++.+++++|.+++++++||+|+|+++|+||++||++++..
T Consensus 94 ~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 94 EVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSIADQMRRHGIHRIPVVQDGVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp HHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHTTTSCC
T ss_pred hHHhhhccccccchhhhccc--CcccCCcchhHHHHHHHHHHcCCcEEEEEECCEEEEEEEHHHHHHHHHh
Confidence 124578999999 9999999999999999999999999999999999999999999998753
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.5e-17 Score=183.55 Aligned_cols=170 Identities=18% Similarity=0.157 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC---CHHHHHHHHHcCCCEEEEccCCcceeec--ccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV---TMYQAQNLIEAGVDGLRVGMGSGSICTT--QEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~---t~e~a~~l~~aGad~I~v~~g~g~~~~~--~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
....+.++++++.+++.||++|.+. ..+.|+.+.++|+|+|+++++.|+...+ .....||.|+..+|.++.+.+.
T Consensus 978 edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~ 1057 (1479)
T 1ea0_A 978 EDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLT 1057 (1479)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHH
Confidence 3467889999999888999998764 4778999999999999997543332222 2245788999999999998875
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++|||++|||+++.|++||++|||++|++||+|+.+.+|.-- ..
T Consensus 1058 ~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~------------------------------r~ 1107 (1479)
T 1ea0_A 1058 LNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMV------------------------------RQ 1107 (1479)
T ss_dssp TTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCC------------------------------CC
T ss_pred HcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHH------------------------------hh
Confidence 43 599999999999999999999999999999999876554310 01
Q ss_pred ccccccccceeeeecc--------CCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 425 KAKLKIAQGVVGAVAD--------KGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~~--------~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
|+++.+|-|+..+.|. ...|.++++.|..+||..|.++|+++++||+.+
T Consensus 1108 Ch~~~CP~Gvatqdp~l~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~g~ 1164 (1479)
T 1ea0_A 1108 CHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGR 1164 (1479)
T ss_dssp TTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCSGGGTTC
T ss_pred ccCCCCCceeEEeCHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCc
Confidence 1222333333322221 125789999999999999999999999999655
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=153.13 Aligned_cols=138 Identities=22% Similarity=0.274 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~ 327 (505)
..+.++.+.+.|++++.++.... ..+.++.+++. +++++. .+.+.+.++.+.++|+|+|.+. ...|++..+.
T Consensus 111 ~~~~~~~~~~~g~~~V~~~~g~~----~~~~i~~~~~~--g~~v~~-~v~t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~ 183 (369)
T 3bw2_A 111 YDAKLAVLLDDPVPVVSFHFGVP----DREVIARLRRA--GTLTLV-TATTPEEARAVEAAGADAVIAQGVEAGGHQGTH 183 (369)
T ss_dssp HHHHHHHHHHSCCSEEEEESSCC----CHHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTTCSEEEEECTTCSEECCCS
T ss_pred HHHHHHHHHhcCCCEEEEeCCCC----cHHHHHHHHHC--CCeEEE-ECCCHHHHHHHHHcCCCEEEEeCCCcCCcCCCc
Confidence 56788889999999999865332 24566777775 677766 6889999999999999999994 3223332211
Q ss_pred cc----cccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceee
Q 010640 328 EV----CAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQ 396 (505)
Q Consensus 328 ~~----~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~ 396 (505)
.. .+++.++...+.++++ ..++|||++|||.++.++.+++++||++|++|+.|+.+.|++.+..++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~i~~---~~~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~~~~~~~k 253 (369)
T 3bw2_A 184 RDSSEDDGAGIGLLSLLAQVRE---AVDIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGAPGPHK 253 (369)
T ss_dssp SCCGGGTTCCCCHHHHHHHHHH---HCSSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTCCCCHHHH
T ss_pred ccccccccccccHHHHHHHHHH---hcCceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcccCccHHHH
Confidence 10 1111344555555443 357999999999999999999999999999999999999998765544
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=189.79 Aligned_cols=222 Identities=14% Similarity=0.068 Sum_probs=152.8
Q ss_pred CCCeeeeeeecCcccccceEEEccch-hhhHHHHHHHHHHcCCeeEE--cCCCCHHHHHHHHHhhhccCCccccCCCeeE
Q 010640 40 IDAVSLSTRLTRNIDLSLPCVASPMD-TVTEDYMAAAMAALGGIGIV--HSNCTAADQARLVVSAKSRRVPIFSSSLDVF 116 (505)
Q Consensus 40 ~~~~~~~~~lt~~~~l~~Pli~a~m~-~vt~~~ma~al~~~Gg~g~i--~~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~ 116 (505)
..++++.++||+.+. ++|||+++|+ ++++.+|++++++.||+|+| +.+++++.+.+.++++++..+. ..| +
T Consensus 567 ~~~~~l~t~~t~~lg-~~PIi~a~M~~~vs~~~LaaAva~aGglG~i~g~g~~~~e~l~~~i~~vk~~~~~--~~p--~- 640 (2060)
T 2uva_G 567 VGQTFVDTKMSRLLG-VPPVMVAGMTPTTVPWDFVAATMNAGYHIELAGGGYYNAQKMSDAISKIEKAIPP--GRG--I- 640 (2060)
T ss_dssp TCCEEEECHHHHHHT-SCSEEECCCTTTTCSHHHHHHHHHTTCEECEEGGGCCSHHHHHHHHHHHGGGSCT--TCC--E-
T ss_pred CCceecchhhhhccc-cceEEecCCCCccccHHHHHHHHHCCCEEEECcCCCCCHHHHHHHHHHHHhhccc--CCC--e-
Confidence 345788999998888 8999999999 78999999999999999999 7788999999999988765410 012 1
Q ss_pred eCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCC
Q 010640 117 KAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKND 196 (505)
Q Consensus 117 v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~ 196 (505)
|+ ++|.. .+..
T Consensus 641 --------------------------------gv-----------------N~~~~-------~p~~------------- 651 (2060)
T 2uva_G 641 --------------------------------TV-----------------NLIYV-------NPRA------------- 651 (2060)
T ss_dssp --------------------------------EE-----------------EEETT-------CTTH-------------
T ss_pred --------------------------------Ee-----------------ccccc-------Cccc-------------
Confidence 11 00100 0000
Q ss_pred CCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE--EEEeCCCCCch
Q 010640 197 VDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV--VVLDSSQGNSS 274 (505)
Q Consensus 197 i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~--I~i~~~~g~~~ 274 (505)
.....+.++.+++.|+++ +.+ +.|.+.
T Consensus 652 -------------------------------------------------~~~~~~~~~~~~~~gv~i~gv~~--~~G~p~ 680 (2060)
T 2uva_G 652 -------------------------------------------------MGWQIPLLGRLRADGVPIEGLTI--GAGVPS 680 (2060)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHTTTCCEEEEEE--ESSCCC
T ss_pred -------------------------------------------------chhHHHHHHHHHHcCCCcceEee--cCCCCC
Confidence 000235566677778887 544 445432
Q ss_pred hHHHHHHHHHHhCCCceEEEcccCCHHHHHHH----HHcCCCEEE---Ec-cCCcceeecccccccCcChHHHHHHHHHH
Q 010640 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNL----IEAGVDGLR---VG-MGSGSICTTQEVCAVGRGQATAVYKVSSI 346 (505)
Q Consensus 275 ~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l----~~aGad~I~---v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~ 346 (505)
..+.++.+++. +++++. .+.+..++..+ .++|+|+|+ +. ..+|++... .+.+.+++..+.++
T Consensus 681 -~e~~~~~l~~~--gi~~i~-~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~---~d~~~~~l~lv~~i--- 750 (2060)
T 2uva_G 681 -IEVANEYIQTL--GIRHIS-FKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSF---EDFHQPILLMYSRI--- 750 (2060)
T ss_dssp -HHHHHHHHHHS--CCSEEE-ECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCS---CCSHHHHHHHHHHH---
T ss_pred -HHHHHHHHHHc--CCeEEE-ecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCc---ccccchHHHHHHHH---
Confidence 12344455554 666653 45555666555 899999998 53 233333321 11223445444444
Q ss_pred HhhcCCcEEecCCCCCHHHHHHHH-----------HhCCCEEEecccccCCCCCCccceeec
Q 010640 347 AAQSGVPVIADGGISNSGHIVKAL-----------VLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 347 ~~~~~ipvIa~GGI~~~~di~kal-----------~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
.+..++|||++|||.++.|+++|| ++|||+|+|||+|+.|.||+++..+|+
T Consensus 751 ~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea~~s~~~K~ 812 (2060)
T 2uva_G 751 RKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEAHTSKQAKQ 812 (2060)
T ss_dssp HTSTTEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTSCCCHHHHH
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCCCCCHHHHH
Confidence 445679999999999999999999 999999999999999999999988774
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-15 Score=151.90 Aligned_cols=130 Identities=25% Similarity=0.369 Sum_probs=99.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc-cCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG-MGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~~ 327 (505)
..+.++.+.+.|+|++.++. +.+. +.++.+++. ++++++ .+.+.+.++.+.++|+|+|.+. ...|+..
T Consensus 77 ~~~~~~~a~~~g~d~V~~~~--g~p~---~~i~~l~~~--g~~v~~-~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~--- 145 (332)
T 2z6i_A 77 VEDIVDLVIEEGVKVVTTGA--GNPS---KYMERFHEA--GIIVIP-VVPSVALAKRMEKIGADAVIAEGMEAGGHI--- 145 (332)
T ss_dssp HHHHHHHHHHTTCSEEEECS--SCGG---GTHHHHHHT--TCEEEE-EESSHHHHHHHHHTTCSCEEEECTTSSEEC---
T ss_pred HHHHHHHHHHCCCCEEEECC--CChH---HHHHHHHHc--CCeEEE-EeCCHHHHHHHHHcCCCEEEEECCCCCCCC---
Confidence 45677888899999998855 3333 345556664 788876 5789999999999999999994 2222221
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceee
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQ 396 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~ 396 (505)
| ..+++..+.++++ ..++|||++|||.++.++.+++++||++|++||+|+.+.|++++..++
T Consensus 146 ---g-~~~~~~ll~~i~~---~~~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~~~~~~~k 207 (332)
T 2z6i_A 146 ---G-KLTTMTLVRQVAT---AISIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYK 207 (332)
T ss_dssp ---C-SSCHHHHHHHHHH---HCSSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTCCSCHHHH
T ss_pred ---C-CccHHHHHHHHHH---hcCCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccccccHHHH
Confidence 1 1345555555544 457999999999999999999999999999999999999999766555
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=180.52 Aligned_cols=170 Identities=20% Similarity=0.182 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC---CHHHHHHHHHcCCCEEEEccCCcceeec--ccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV---TMYQAQNLIEAGVDGLRVGMGSGSICTT--QEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~---t~e~a~~l~~aGad~I~v~~g~g~~~~~--~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
....+.++++++..|+.||++|.+. ..+.|+.+.++|+|+|++++++|+...+ .....||.|+..+|.++.+.+.
T Consensus 1013 edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev~~al~ 1092 (1520)
T 1ofd_A 1013 EDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLM 1092 (1520)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHHHHHHH
Confidence 3467889999999888999998664 4778899999999999997554332222 1245688999999999988775
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++|||++|||+++.|++||++|||++|++||+|+.+.+|.--. .
T Consensus 1093 ~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~~~r------------------------------~ 1142 (1520)
T 1ofd_A 1093 ENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMAR------------------------------V 1142 (1520)
T ss_dssp HTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCC------------------------------C
T ss_pred hcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHHHHH------------------------------h
Confidence 43 5999999999999999999999999999999998776654111 1
Q ss_pred ccccccccceeeeec--------cCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 425 KAKLKIAQGVVGAVA--------DKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~--------~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
|+++.+|-|+..+.| ....|.++++.|..+||..|.++|+++++||+.+
T Consensus 1143 Ch~~~CP~Gvatqdp~L~~~~~gg~e~V~n~l~~l~~ELr~~Ma~lG~~si~eL~gr 1199 (1520)
T 1ofd_A 1143 CHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIGR 1199 (1520)
T ss_dssp GGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTTC
T ss_pred ccCCCCCceeEeeCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhCc
Confidence 222233333333221 0225889999999999999999999999999633
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=147.89 Aligned_cols=160 Identities=9% Similarity=0.050 Sum_probs=103.5
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceE
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~ 178 (505)
....++|..++ ++++++.|+.+++++|.+ ++ +||+|+ +++++|+||.+|++... .+.++.++|++ ++++
T Consensus 13 ~~~~~~~~~~~--~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~l~Givt~~dl~~~~-~~~~v~~im~~--~~~~ 84 (213)
T 1vr9_A 13 MKVKKWVTQDF--PMVEESATVRECLHRMRQYQTNECIVKDR---EGHFRGVVNKEDLLDLD-LDSSVFNKVSL--PDFF 84 (213)
T ss_dssp CBGGGGCBSCS--CEEETTCBHHHHHHHHHHTTSSEEEEECT---TSBEEEEEEGGGGTTSC-TTSBSGGGCBC--TTCC
T ss_pred cCHHHhhcCCC--eEECCCCcHHHHHHHHHHCCCCEEEEEcC---CCEEEEEEEHHHHHhhc-CCCcHHHHccC--CCEE
Confidence 34556788888 999999999999999988 66 999997 89999999999997433 25689999998 9999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+.+++++.+++++|.++++..+||+|+ |+++|+||.+|+++....... ..+...++.+.... ......+.++.+.
T Consensus 85 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~~---~~~~~~~l~~~~~~-~~~~l~~~~~~l~ 160 (213)
T 1vr9_A 85 VHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA---MDVPGIRFSVLLED-KPGELRKVVDALA 160 (213)
T ss_dssp EETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC-------------------------------
T ss_pred ECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHhc---CCCCcEEEEEEeCC-CCccHHHHHHHHH
Confidence 999999999999999999999999999 999999999999998764433 23333444443111 1122445577778
Q ss_pred HcCccEEEEeCCCCCc
Q 010640 258 KAGVNVVVLDSSQGNS 273 (505)
Q Consensus 258 eaGad~I~i~~~~g~~ 273 (505)
+.+++++.+...+|+.
T Consensus 161 ~~~~~~l~V~~~~~~~ 176 (213)
T 1vr9_A 161 LSNINILSVITTRSGD 176 (213)
T ss_dssp ----------------
T ss_pred HCCCcEEEEEEEecCC
Confidence 8899998887766653
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-16 Score=140.53 Aligned_cols=114 Identities=13% Similarity=0.122 Sum_probs=100.5
Q ss_pred hccCCccc--cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc--ccccccccccccC
Q 010640 102 KSRRVPIF--SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS--DNKVKIFDYMRDC 173 (505)
Q Consensus 102 ~~~~~~~~--~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~--~~~~~v~~im~~~ 173 (505)
.+..++|. .++ +++++++|+.+|+++|.+ ++ +||+++ + ++++|+||.+|++... ....++.++| +
T Consensus 42 ~~v~diM~~~~~~--~~v~~~~~v~~a~~~m~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~~~~~~v~~im-~- 114 (172)
T 3lhh_A 42 RTISSLMVPRSDI--VFLDLNLPLDANLRTVMQSPHSRFPVCRN---NVDDMVGIISAKQLLSESIAGERLELVDLV-K- 114 (172)
T ss_dssp -CTTTTSEEGGGC--CCEETTSCHHHHHHHHHTCCCSEEEEESS---STTSEEEEEEHHHHHHHHHTTCCCCGGGGC-B-
T ss_pred CCHHHhCccHHHe--EEEcCCCCHHHHHHHHHhCCCCEEEEEeC---CCCeEEEEEEHHHHHHHHhhcCcccHHHHh-c-
Confidence 35667888 556 899999999999999999 77 999986 6 9999999999997432 2367899999 7
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+++++++++++.+++++|.+++++.+||+|+ |+++|+||++|+++....
T Consensus 115 -~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 115 -NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp -CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred -CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence 8999999999999999999999999999999 999999999999998753
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=130.93 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=95.4
Q ss_pred Cccc--cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc-ccccccccccccCCCceE
Q 010640 106 VPIF--SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS-DNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 106 ~~~~--~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~-~~~~~v~~im~~~~~~~~ 178 (505)
++|. .++ +++++++++.+|++.|.+ ++ +||+++ + ++++|+||.+|+.... ....++.++|+ ++++
T Consensus 9 diM~~~~~~--~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~~Givt~~dl~~~~~~~~~~v~~~m~---~~~~ 80 (129)
T 3jtf_A 9 DIMVPRSRM--DLLDISQPLPQLLATIIETAHSRFPVYED---DRDNIIGILLAKDLLRYMLEPALDIRSLVR---PAVF 80 (129)
T ss_dssp HHCEEGGGC--CCEETTSCHHHHHHHHHHSCCSEEEEESS---STTCEEEEEEGGGGGGGGTCTTSCGGGGCB---CCCE
T ss_pred HhCccHHHe--EEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCcEEEEEEHHHHHhHhccCCcCHHHHhC---CCeE
Confidence 4566 345 889999999999999998 77 999986 5 8999999999997432 34678999996 5789
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++++.+++++|.+++.+.+||+|+ |+++|+||++|+++...
T Consensus 81 v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ 125 (129)
T 3jtf_A 81 IPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV 125 (129)
T ss_dssp EETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 999999999999999999999999999 99999999999998753
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=132.17 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=95.2
Q ss_pred Cccc--cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEeccccccc----cccccccccccccCCC
Q 010640 106 VPIF--SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENL----SDNKVKIFDYMRDCSS 175 (505)
Q Consensus 106 ~~~~--~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~----~~~~~~v~~im~~~~~ 175 (505)
++|. .++ +++++++|+.+|+++|.+ ++ +||+++ + ++++|+||.+|++.. .....++.++|+ +
T Consensus 7 ~iM~~~~~~--~~v~~~~~v~~a~~~m~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~---~ 78 (136)
T 3lfr_A 7 DIMVPRSQM--ISIKATQTPREFLPAVIDAAHSRYPVIGE---SHDDVLGVLLAKDLLPLILKADGDSDDVKKLLR---P 78 (136)
T ss_dssp HHSEEGGGC--CCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCB---C
T ss_pred hccccHHHE--EEEcCCCCHHHHHHHHHhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcC---C
Confidence 4565 345 889999999999999999 77 999997 6 899999999999743 234678999996 5
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++++++++++.+++++|.+++++++||+|+ |+++|+||++|+++.+.
T Consensus 79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~ 126 (136)
T 3lfr_A 79 ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV 126 (136)
T ss_dssp CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 789999999999999999999999999998 99999999999999764
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=134.50 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=99.5
Q ss_pred ccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc--ccccccccccccCC
Q 010640 103 SRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS--DNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~--~~~~~v~~im~~~~ 174 (505)
+..++|.. ++ +++++++++.++++.|.+ ++ +||+|+ + ++++|+||.+|+.... ....++.++| +
T Consensus 24 ~v~diM~~~~~~--~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~~~~~~v~~~m-~-- 95 (148)
T 3lv9_A 24 KIREIMVPRTDM--VCIYESDSEEKILAILKEEGVTRYPVCRK---NKDDILGFVHIRDLYNQKINENKIELEEIL-R-- 95 (148)
T ss_dssp BGGGTSEETTTC--CCEETTCCHHHHHHHHHHSCCSEEEEESS---STTSEEEEEEHHHHHHHHHHHSCCCGGGTC-B--
T ss_pred CHHHccccHHHe--EEECCCCCHHHHHHHHHHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHhcCCCccHHHhc-C--
Confidence 45568887 77 899999999999999998 77 999996 6 8999999999997432 2267899999 6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++++++++.++++.|.+++++.+||+|+ |+++|+||++|+++...
T Consensus 96 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~ 144 (148)
T 3lv9_A 96 DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIV 144 (148)
T ss_dssp CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHH
T ss_pred CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence 8999999999999999999999999999999 99999999999998753
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=130.33 Aligned_cols=108 Identities=14% Similarity=0.164 Sum_probs=94.7
Q ss_pred CccccC--CCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEeccccccc---cccccccccccccCCCc
Q 010640 106 VPIFSS--SLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENL---SDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 106 ~~~~~~--p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~---~~~~~~v~~im~~~~~~ 176 (505)
++|... + +++++++++.++++.|.+ ++ +||+++ + ++++|+||.+|+... .....++.++|+ ++
T Consensus 7 diM~~~~~~--~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~---~~ 78 (127)
T 3nqr_A 7 DIMIPRSQM--ITLKRNQTLDECLDVIIESAHSRFPVISE---DKDHIEGILMAKDLLPFMRSDAEAFSMDKVLR---TA 78 (127)
T ss_dssp HHSEEGGGC--CCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGGSTTCCCCCHHHHCB---CC
T ss_pred HhcccHHHe--EEEcCCCCHHHHHHHHHhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHhccCCCCCHHHHcC---CC
Confidence 456543 6 899999999999999998 77 999997 6 899999999999743 234678999996 46
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++++++++.+++++|.+++++++||+|+ |+++|+||++|+++..
T Consensus 79 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l 124 (127)
T 3nqr_A 79 VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI 124 (127)
T ss_dssp CEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred eEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence 79999999999999999999999999998 9999999999999875
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=131.63 Aligned_cols=113 Identities=16% Similarity=0.188 Sum_probs=98.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc---ccccccccccccCCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS---DNKVKIFDYMRDCSS 175 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~---~~~~~v~~im~~~~~ 175 (505)
+..++|...+..+++++++++.+|++.|.+ ++ +||+|+ + ++++|+||.+|++... ....++.++|+ +
T Consensus 7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~---~ 80 (130)
T 3i8n_A 7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE---QKDNIIGFVHRLELFKMQQSGSGQKQLGAVMR---P 80 (130)
T ss_dssp CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS---STTCEEEECCHHHHHHHHHTTTTTSBHHHHSE---E
T ss_pred CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC---CCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhc---C
Confidence 456678755433689999999999999999 77 999997 6 8999999999997332 23578999995 6
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++++++++++.++++.|.+++++.+||+|+ |+++|+||++|+++..
T Consensus 81 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l 127 (130)
T 3i8n_A 81 IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHL 127 (130)
T ss_dssp CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHH
Confidence 789999999999999999999999999998 9999999999999875
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=136.71 Aligned_cols=114 Identities=11% Similarity=0.136 Sum_probs=97.6
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---------ccccccccc
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---------DNKVKIFDY 169 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---------~~~~~v~~i 169 (505)
++.+++|++..+.+++++++|+.+|+++|.+ ++ +||+|+ +++++|+||.+|+.... ....++.++
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~i 91 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHM 91 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGT
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEecchhhhhhhcccccccccccCHHHh
Confidence 4566778764444899999999999999999 88 999997 89999999999986211 135689999
Q ss_pred cccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 170 MRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 170 m~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
|++ +++++++++++.+++++|.+++ .+||||+ |+++|+||++||+++..
T Consensus 92 m~~--~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~ 141 (156)
T 3k6e_A 92 TKT--DVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVN 141 (156)
T ss_dssp CBC--SCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred hcC--CceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHH
Confidence 999 9999999999999999999876 4999999 99999999999999874
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=128.54 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=97.9
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-cccccccccccccCCCceEecC
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-SDNKVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-~~~~~~v~~im~~~~~~~~v~~ 181 (505)
++|..++ +++++++++.++++.|.+ ++ +||+|+ +++++|+||.+|+... .....++.++|.+ ++.++++
T Consensus 5 ~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~G~vt~~dl~~~~~~~~~~v~~~~~~--~~~~v~~ 77 (122)
T 3kpb_A 5 DILSKPP--ITAHSNISIMEAAKILIKHNINHLPIVDE---HGKLVGIITSWDIAKALAQNKKTIEEIMTR--NVITAHE 77 (122)
T ss_dssp HHCCSCC--CCEETTSBHHHHHHHHHHHTCSCEEEECT---TSBEEEEECHHHHHHHHHTTCCBGGGTSBS--SCCCEET
T ss_pred HhhCCCC--EEeCCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEEHHHHHHHHHhcccCHHHHhcC--CCeEECC
Confidence 3555667 899999999999999998 76 999997 8999999999999732 2334589999998 9999999
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++++.++++.|.+++.+.+||+|+ |+++|+||++|+++...
T Consensus 78 ~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~ 119 (122)
T 3kpb_A 78 DEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG 119 (122)
T ss_dssp TSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhh
Confidence 999999999999999999999999 99999999999998764
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=129.92 Aligned_cols=109 Identities=15% Similarity=0.190 Sum_probs=95.7
Q ss_pred ccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc--ccccccccccccCC
Q 010640 103 SRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS--DNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~--~~~~~v~~im~~~~ 174 (505)
+..++|.+ ++ +++++++++.++++.|.+ ++ +||+++ + ++++|+||.+|++... ....++.++|+
T Consensus 39 ~v~diM~~~~~~--~~v~~~~~i~~a~~~m~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~~~~~~v~~im~--- 110 (156)
T 3oi8_A 39 EVRDAMITRSRM--NVLKENDSIERITAYVIDTAHSRFPVIGE---DKDEVLGILHAKDLLKYMFNPEQFHLKSILR--- 110 (156)
T ss_dssp BGGGTCEEGGGC--CCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGSSCGGGCCHHHHCB---
T ss_pred CHhheeeeHHHe--EEECCCCCHHHHHHHHHHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHHcCCcccHHHHcC---
Confidence 45578876 56 899999999999999998 77 999997 5 5999999999997432 24678999996
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
+++++++++++.+++++|.+++++.+||+|+ |+++|+||++|+++
T Consensus 111 ~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dile 156 (156)
T 3oi8_A 111 PAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDIIE 156 (156)
T ss_dssp CCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHCC
T ss_pred CCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhcC
Confidence 5789999999999999999999999999998 99999999999863
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=134.76 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=104.8
Q ss_pred HHHHHHHhhhccC-----CccccCCCeeEeCCCCCHHHHHHHhcC----Ce--EEEEeCCCCCCeEEEEEeccccccccc
Q 010640 93 DQARLVVSAKSRR-----VPIFSSSLDVFKAPDGCINDANDFDGS----NY--VFVTESGTRRSRILGYVTKSDWENLSD 161 (505)
Q Consensus 93 ~~~~~v~~v~~~~-----~~~~~~p~~~~v~~~~tv~~a~~~~~~----~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~ 161 (505)
+++..++++..+. ++|..++ +++++++|+.+|++.|.+ ++ +||+|+ +++++|+||.+|+... .
T Consensus 40 ~e~~~i~~~l~~~~~~v~~iM~~~~--~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~---~~~lvGivt~~dll~~-~ 113 (205)
T 3kxr_A 40 RQRQRFELYDQYSENEIGRYTDHQM--LVLSDKATVAQAQRFFRRIELDCNDNLFIVDE---ADKYLGTVRRYDIFKH-E 113 (205)
T ss_dssp HHHHHHHHHHHSCTTCGGGGCBCCC--CEEETTCBHHHHHHHHHHCCCTTCCEEEEECT---TCBEEEEEEHHHHTTS-C
T ss_pred HHHHHHHHHhCCCcchHHhhccCce--EEECCCCcHHHHHHHHHhhCccCeeEEEEEcC---CCeEEEEEEHHHHHhC-C
Confidence 3455666655443 5788888 999999999999999864 33 899998 8999999999999643 3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
...++.++|++ +++++++++++.+++++|.++++..+||||+ |+++|+||.+|+++...
T Consensus 114 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~ 173 (205)
T 3kxr_A 114 PHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVR 173 (205)
T ss_dssp TTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred CcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 46789999998 9999999999999999999999999999998 99999999999998864
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-15 Score=129.95 Aligned_cols=110 Identities=12% Similarity=0.012 Sum_probs=93.8
Q ss_pred Ccccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc-----cccccccccccCCC
Q 010640 106 VPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD-----NKVKIFDYMRDCSS 175 (505)
Q Consensus 106 ~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~-----~~~~v~~im~~~~~ 175 (505)
++|+. ++ +++++++++.+|++.|.+ ++ +||++++ +++++|+||.+|++.... ...++.++| + +
T Consensus 6 ~iM~~~~~~--~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~--~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~--~ 78 (130)
T 3hf7_A 6 DIMVPRNEI--VGIDINDDWKSIVRQLTHSPHGRIVLYRDS--LDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-D--E 78 (130)
T ss_dssp HHSEEGGGC--CEEETTSCHHHHHHHHHTCSSSEEEEESSS--GGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-B--C
T ss_pred HhCccHHHE--EEEcCCCCHHHHHHHHHHCCCCeEEEEcCC--CCcEEEEEEHHHHHHHHhccCccchhhHHHhc-c--C
Confidence 35543 45 899999999999999999 77 9999741 589999999999973221 235789999 4 7
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++++++++++.+++++|.+++++.+||+|+ |+++|+||++|+++...
T Consensus 79 ~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~ 126 (130)
T 3hf7_A 79 IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 126 (130)
T ss_dssp CCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence 899999999999999999999999999998 99999999999999764
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-15 Score=130.00 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=99.9
Q ss_pred hccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----c-cccccccccc
Q 010640 102 KSRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----D-NKVKIFDYMR 171 (505)
Q Consensus 102 ~~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~-~~~~v~~im~ 171 (505)
.+..++|.. ++ +++++++++.++++.|.+ ++ +||+|+ +|+++|+||.+|+.... . ...++.++|+
T Consensus 28 ~~v~dim~~~~~~--~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~ 102 (149)
T 3k2v_A 28 LRVNDIMHTGDEI--PHVGLQATLRDALLEITRKNLGMTAICDD---DMNIIGIFTDGDLRRVFDTGVDMRDASIADVMT 102 (149)
T ss_dssp SBGGGTSBCGGGS--CEECTTCBHHHHHHHHHHHTSSEEEEECT---TCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSE
T ss_pred cCHHHHhcCCCCC--eEECCCCcHHHHHHHHHhCCCcEEEEECC---CCcEEEEecHHHHHHHHhcCCCcccCcHHHHcC
Confidence 366678887 77 999999999999999998 76 999997 89999999999996321 1 4678999999
Q ss_pred cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 172 DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 172 ~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
+ +++++.+++++.+++++|.+++++.+||+|+++++|+||++||+++
T Consensus 103 ~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~Giit~~dil~a 149 (149)
T 3k2v_A 103 R--GGIRIRPGTLAVDALNLMQSRHITCVLVADGDHLLGVVHMHDLLRA 149 (149)
T ss_dssp E--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHTCC
T ss_pred C--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCCEEEEEEEHHHhhcC
Confidence 8 8999999999999999999999999999999999999999999863
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-15 Score=129.70 Aligned_cols=114 Identities=16% Similarity=0.168 Sum_probs=99.8
Q ss_pred ccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc------------------
Q 010640 103 SRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL------------------ 159 (505)
Q Consensus 103 ~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~------------------ 159 (505)
+..++|.. ++ +++++++++.++++.|.+ ++ +||+|+ +++++|+||.+|+...
T Consensus 6 ~v~~im~~~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~ 80 (152)
T 4gqw_A 6 TVGEFMTKKEDL--HVVKPTTTVDEALELLVENRITGFPVIDE---DWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLS 80 (152)
T ss_dssp BGGGTSEESTTC--CCBCTTSBHHHHHHHHHHTTCSEEEEECT---TCBEEEEEEHHHHTTCC----CCHHHHHHHTC--
T ss_pred EhhhccCCCCCC--eEECCCCcHHHHHHHHHHcCCceEEEEeC---CCeEEEEEEHHHHHHhhcccCcccchHHHHHHHH
Confidence 45567777 56 899999999999999988 76 999997 7999999999999632
Q ss_pred cccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 160 SDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 160 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.....++.++|++ +++++.+++++.+++++|.+++++.+||+|+ |+++|+||++||++....
T Consensus 81 ~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 81 KTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp ---CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred HhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence 1234689999998 8999999999999999999999999999998 999999999999998754
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.8e-15 Score=128.49 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=98.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCC--eEEEEEecccccccc----ccccccccccccC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRS--RILGYVTKSDWENLS----DNKVKIFDYMRDC 173 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g--~lvGivt~~Dl~~~~----~~~~~v~~im~~~ 173 (505)
+..++|..++ +++++++++.+++++|.+ ++ +||+|+ ++ +++|+||.+|+.... ....++.++|++
T Consensus 6 ~v~~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~- 79 (141)
T 2rih_A 6 RTSELLKRPP--VSLPETATIREVATELAKNRVGLAVLTAR---DNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANS- 79 (141)
T ss_dssp BGGGGCCSCC--EEEETTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBC-
T ss_pred EHHHHhcCCC--eEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCC-
Confidence 4556777777 999999999999999988 76 999997 77 999999999996321 235789999998
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++.++ ++.+++++|.+++++++||+|+ |+++|+||++|+++..
T Consensus 80 -~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 126 (141)
T 2rih_A 80 -PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 126 (141)
T ss_dssp -CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred -CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence 99999999 9999999999999999999998 9999999999998764
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-15 Score=127.31 Aligned_cols=112 Identities=17% Similarity=0.053 Sum_probs=98.9
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----cccccccccccCCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----NKVKIFDYMRDCSS 175 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----~~~~v~~im~~~~~ 175 (505)
...++|..++ .++++++++.++++.|.+ ++ +||+| +++++|+||.+|+..... ...++.++|++ +
T Consensus 6 ~v~~~m~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~ 77 (128)
T 3gby_A 6 TFSYLAETDY--PVFTLGGSTADAARRLAASGCACAPVLD----GERYLGMVHLSRLLEGRKGWPTVKEKLGEELLE--T 77 (128)
T ss_dssp BGGGGCBCCS--CCEETTSBHHHHHHHHHHHTCSEEEEEE----TTEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCB--C
T ss_pred EHHHhhcCCc--ceECCCCCHHHHHHHHHHCCCcEEEEEE----CCEEEEEEEHHHHHHHHhhCCcccCcHHHHccC--C
Confidence 3456788888 999999999999999998 76 99998 589999999999973321 22679999998 9
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+.++.+++++.++++.|.+++.+++||+|+ |+++|+||++|+++...
T Consensus 78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ 125 (128)
T 3gby_A 78 VRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLA 125 (128)
T ss_dssp CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred CcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 999999999999999999999999999998 99999999999998764
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-15 Score=131.46 Aligned_cols=112 Identities=14% Similarity=0.191 Sum_probs=99.5
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-------------ccccccc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-------------SDNKVKI 166 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-------------~~~~~~v 166 (505)
+..++|..++ +++++++|+.+|+++|.+ ++ +||+|+ +++++|+||.+|+... .....++
T Consensus 6 ~v~dim~~~~--~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v 80 (160)
T 2o16_A 6 KVEDMMTRHP--HTLLRTHTLNDAKHLMEALDIRHVPIVDA---NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL 80 (160)
T ss_dssp BGGGTSEESC--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred cHHHHhcCCC--eEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHHHhhcccccccchhcccCH
Confidence 4556787788 899999999999999988 76 999997 8999999999999622 1235689
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 167 FDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 167 ~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
.++|++ +++++.+++++.+++++|.+++++.+||+|+|+++|+||+.||++..
T Consensus 81 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~lvGiit~~dil~~~ 133 (160)
T 2o16_A 81 FEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIA 133 (160)
T ss_dssp HHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 999998 99999999999999999999999999999999999999999999875
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-15 Score=132.16 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=98.8
Q ss_pred ccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEE-eCCCCCCeEEEEEeccccccc--cccccccccccccCC
Q 010640 103 SRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVT-ESGTRRSRILGYVTKSDWENL--SDNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVv-d~~~~~g~lvGivt~~Dl~~~--~~~~~~v~~im~~~~ 174 (505)
+..++|.. ++ +++++++++.+|++.|.+ ++ +||+ +++ +++++|+||.+|+... .....++.++| +
T Consensus 21 ~v~~iM~~~~~~--~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~--~~~lvGivt~~dl~~~~~~~~~~~v~~~m-~-- 93 (153)
T 3oco_A 21 VASDVMVDRTSM--SVVDVDETIADALLLYLEEQYSRFPVTADND--KDKIIGYAYNYDIVRQARIDDKAKISTIM-R-- 93 (153)
T ss_dssp BHHHHSEEGGGC--CCEETTSBHHHHHHHHHHHCCSEEEEEETTE--EEEEEEEEEHHHHHHHHHHHTTSBGGGTC-B--
T ss_pred EeeeEecchhhe--EEEcCCCCHHHHHHHHHhCCCCEEEEEECCC--CCcEEEEEEHHHHHhHHhcCCCCcHHHHh-C--
Confidence 34457775 67 899999999999999998 77 9999 531 4899999999999732 12367899999 7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+++++.+++++.+++++|.+++++.+||+|+ |+++|+||++|+++....
T Consensus 94 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 94 DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG 143 (153)
T ss_dssp CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence 8999999999999999999999999999998 999999999999998753
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-15 Score=134.07 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=98.0
Q ss_pred CCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--------------------
Q 010640 105 RVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-------------------- 159 (505)
Q Consensus 105 ~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-------------------- 159 (505)
.++|.. ++ +++++++++.+|+++|.+ ++ +||+|+ +++++|+||.+|+...
T Consensus 7 ~dim~~~~~~--~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 81 (180)
T 3sl7_A 7 GDFMTPRQNL--HVVKPSTSVDDALELLVEKKVTGLPVIDD---NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST 81 (180)
T ss_dssp HHHSEEGGGC--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHTCC-------------------C
T ss_pred HHhcCCCCCc--eeeCCCCcHHHHHHHHHHcCCCeEEEECC---CCeEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence 345666 56 899999999999999998 76 999998 8999999999999631
Q ss_pred ------------cccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 160 ------------SDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 160 ------------~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.....++.++|++ +++++++++++.+++++|.+++++++||+|+ |+++|+||++||++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~ 155 (180)
T 3sl7_A 82 WKTFNELQKLISKTYGKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL 155 (180)
T ss_dssp CCSHHHHHHHHHTTTTCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred hhhhHHHHHHHhccccccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 1235689999998 8999999999999999999999999999997 99999999999998764
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-15 Score=127.78 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=98.6
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc-cc-c---c-cccccccccccC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE-NL-S---D-NKVKIFDYMRDC 173 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~-~~-~---~-~~~~v~~im~~~ 173 (505)
+..++|..++ +++++++++.++++.|.+ ++ +||+|+ +++++|+||.+|+. .. . . ...++.++|++
T Consensus 9 ~v~~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~- 82 (133)
T 1y5h_A 9 TARDIMNAGV--TCVGEHETLTAAAQYMREHDIGALPICGD---DDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD- 82 (133)
T ss_dssp CHHHHSEETC--CCEETTSBHHHHHHHHHHHTCSEEEEECG---GGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT-
T ss_pred CHHHHhcCCc--eEeCCCCCHHHHHHHHHHhCCCeEEEECC---CCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC-
Confidence 4445677777 899999999999999988 66 999987 89999999999996 22 1 1 35689999998
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
+++++++++++.+++++|.+++.+.+||+|+|+++|+||++||++..
T Consensus 83 -~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~g~~~Giit~~dil~~l 129 (133)
T 1y5h_A 83 -SIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 129 (133)
T ss_dssp -CCCCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred -CCEEECCCCCHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-14 Score=131.08 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=97.0
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCC-CeEEEEEecccccccc--ccccccccccccCCC
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRR-SRILGYVTKSDWENLS--DNKVKIFDYMRDCSS 175 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~-g~lvGivt~~Dl~~~~--~~~~~v~~im~~~~~ 175 (505)
.++.++|+.....+++++++++.+++++|.+ ++ +||+++ + ++++|+||.+|++... ....++. |.+ +
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~~lvGivt~~Dl~~~~~~~~~~~v~--~~~--~ 108 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG---SLDEVVGIGRAKDLVADLITEGRVRRN--RLR--D 108 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS---STTSEEEEEEHHHHHHHHHHHSSCCGG--GSB--C
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC---CCCCEEEEEEHHHHHHHHhcCCcchhH--hcC--C
Confidence 3566788743222889999999999999998 77 999986 5 8999999999997432 2345677 445 7
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
++++++++++.+++++|.+++++.+||+|+ |+++|+||++||++.+..
T Consensus 109 ~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 109 PIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp CCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred CeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence 899999999999999999999999999998 999999999999998764
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-14 Score=130.68 Aligned_cols=111 Identities=20% Similarity=0.198 Sum_probs=98.5
Q ss_pred Ccccc---CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc------cccccccccccccC
Q 010640 106 VPIFS---SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL------SDNKVKIFDYMRDC 173 (505)
Q Consensus 106 ~~~~~---~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~------~~~~~~v~~im~~~ 173 (505)
++|.. ++ +++++++++.+|+++|.+ ++ +||+|+ +|+++|+||.+|+... .....++.++|++
T Consensus 28 dim~~~~~~~--~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~- 101 (165)
T 3fhm_A 28 DLLDRKGRDV--VTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTK- 101 (165)
T ss_dssp HHHHHHCSCC--CEECTTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSBS-
T ss_pred HHhccCCCCC--eEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHHhcCCccccCCHHHHhcC-
Confidence 45654 56 899999999999999988 76 999997 8999999999999632 2245789999998
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
+++++.+++++.+++++|.+++++.+||+|+|+++|+||+.||++....
T Consensus 102 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 102 -NVVRCQHNSTTDQLMEIMTGGRFRHVPVEENGRLAGIISIGDVVKARIG 150 (165)
T ss_dssp -SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHTTC
T ss_pred -CCeEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998754
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=128.74 Aligned_cols=114 Identities=15% Similarity=0.103 Sum_probs=100.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc-----cccccccccccccCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-----SDNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-----~~~~~~v~~im~~~~ 174 (505)
+..++|.. | +++++++++.+|++.|.+ ++ +||+|+ +++++|+||.+|+... .....++.++|++..
T Consensus 18 ~v~~im~~-~--~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~ 91 (159)
T 3fv6_A 18 QVKDFQSI-P--VVIHENVSVYDAICTMFLEDVGTLFVVDR---DAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMP 91 (159)
T ss_dssp BGGGSCBC-C--CEEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEETT
T ss_pred CHHHHcCC-C--EEECCCCcHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCCC
Confidence 55667764 7 799999999999999998 76 999997 8999999999999732 124678999998766
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-C---eeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-G---ERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g---~l~GiIt~~dil~~~~ 222 (505)
+++++.+++++.+++++|.+++++.+||+|+ | +++|+||++||++...
T Consensus 92 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~ 143 (159)
T 3fv6_A 92 NITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILV 143 (159)
T ss_dssp SCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHH
T ss_pred CcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHH
Confidence 7899999999999999999999999999998 7 9999999999998765
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=122.89 Aligned_cols=112 Identities=14% Similarity=0.211 Sum_probs=98.4
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----ccccccccccccCCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----DNKVKIFDYMRDCSS 175 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----~~~~~v~~im~~~~~ 175 (505)
+..++|..++ +++++++++.++++.|.+ ++ +||+| +++++|+||.+|+.... ....++.++|++ +
T Consensus 5 ~v~~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~ 76 (133)
T 2ef7_A 5 IVKEYMKTQV--ISVTKDAKLNDIAKVMTEKNIGSVIVVD----GNKPVGIITERDIVKAIGKGKSLETKAEEFMTA--S 76 (133)
T ss_dssp BGGGTSBCSC--CEEETTCBHHHHHHHHHHHTCSEEEEEE----TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--C
T ss_pred cHHHhccCCC--EEECCCCcHHHHHHHHHhcCCCEEEEEE----CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC--C
Confidence 3445777777 899999999999999988 66 99998 68999999999996321 235789999998 9
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+.++++++++.++++.|.+++.+.+||+|+ |+++|+||+.|+++...
T Consensus 77 ~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~ 124 (133)
T 2ef7_A 77 LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID 124 (133)
T ss_dssp CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence 999999999999999999999999999997 99999999999998764
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-14 Score=127.42 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=96.6
Q ss_pred ccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----------ccccccc
Q 010640 103 SRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----------DNKVKIF 167 (505)
Q Consensus 103 ~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----------~~~~~v~ 167 (505)
+..++|.. ++ +++++++++.+|++.|.+ ++ +||+|+ +|+++|+||.+|+.... ....++.
T Consensus 16 ~v~~im~~~~~~--~~v~~~~~l~~a~~~~~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~ 90 (150)
T 3lqn_A 16 FVKDLMISSEKV--AHVQIGNGLEHALLVLVKSGYSAIPVLDP---MYKLHGLISTAMILDGILGLERIEFERLEEMKVE 90 (150)
T ss_dssp BHHHHSEEGGGS--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGG
T ss_pred ChhhcccCCCce--EEECCCCcHHHHHHHHHHcCCcEEEEECC---CCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHH
Confidence 44456763 46 899999999999999988 76 999997 89999999999996211 2457899
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 168 DYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 168 ~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++|++ +++++.+++++.+++++|.++++ +||+|+ |+++|+||++||++...
T Consensus 91 ~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~ 142 (150)
T 3lqn_A 91 QVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLN 142 (150)
T ss_dssp GTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred HHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHH
Confidence 99998 99999999999999999999987 999997 99999999999998764
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=168.87 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=143.5
Q ss_pred eeeeeeecCcccccceEEEccchh-hhHHHHHHHHHHcCCeeEEc--CCCCHHHHHHHHHhhhccCCccccCCCeeEeCC
Q 010640 43 VSLSTRLTRNIDLSLPCVASPMDT-VTEDYMAAAMAALGGIGIVH--SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAP 119 (505)
Q Consensus 43 ~~~~~~lt~~~~l~~Pli~a~m~~-vt~~~ma~al~~~Gg~g~i~--~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~ 119 (505)
+.+.|++|.-+. ..|||+++|.. ....+|+.+++++||+|+|. ...+++..++.+++++...+ .
T Consensus 577 ~~~~t~~t~llg-~~PIi~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~l~~~I~~~~~~t~----~-------- 643 (2051)
T 2uv8_G 577 IFVETKFSKLIG-RPPLLVPGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAGMTAAIDSVVSQIE----K-------- 643 (2051)
T ss_dssp EEEECHHHHHHS-SCSEEECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHHHHHHHHHHHHHSC----T--------
T ss_pred hhHHHHHHHhhC-ccceecCCCccccccHHHHHHHHcCCcEEEEccCCCCCHHHHHHHHHHHHHhcC----C--------
Confidence 456788887777 58999999984 44899999999999999993 35688998888888776442 1
Q ss_pred CCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCe
Q 010640 120 DGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDF 199 (505)
Q Consensus 120 ~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~ 199 (505)
++.+|+= +|.. + +.
T Consensus 644 -------------------------~~~~gvN-----------------~~~~--~-----~~----------------- 657 (2051)
T 2uv8_G 644 -------------------------GSTFGIN-----------------LIYV--N-----PF----------------- 657 (2051)
T ss_dssp -------------------------TCCEEEE-----------------EETT--C-----TT-----------------
T ss_pred -------------------------CCceEEE-----------------Eeec--C-----hh-----------------
Confidence 1112210 0100 0 00
Q ss_pred eEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE--EEEeCCCCCchhHH
Q 010640 200 VVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV--VVLDSSQGNSSFQI 277 (505)
Q Consensus 200 lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~--I~i~~~~g~~~~~~ 277 (505)
......+.++.+++.|+.+ +.+ +.|.+. ..
T Consensus 658 ---------------------------------------------~~~~~~~~~~~~~~~gv~i~~v~~--~ag~p~-~~ 689 (2051)
T 2uv8_G 658 ---------------------------------------------MLQWGIPLIKELRSKGYPIQFLTI--GAGVPS-LE 689 (2051)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHTTCSEEEEEE--ESSCCC-HH
T ss_pred ---------------------------------------------hhhhhHHHHHHHHHcCCCcceEEe--cCCCCc-hh
Confidence 0001125667778888888 544 444432 11
Q ss_pred HHHHHHHHhCCCceEEE---cccCCHHHHHHHHHcCCCEE---EE-ccCCcceeecccccccCcChHHHHHHHHHHHhhc
Q 010640 278 EMIKYAKKTYPELDVIG---GNVVTMYQAQNLIEAGVDGL---RV-GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS 350 (505)
Q Consensus 278 ~~i~~l~~~~~~~~Vi~---g~V~t~e~a~~l~~aGad~I---~v-~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~ 350 (505)
..+..+... ++++|. +.+.....+..+.++|+|++ .+ |..+|++... .+.+.+++..+ .+.++..
T Consensus 690 ~~~~~i~~l--G~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~---~d~~~~~l~l~---~~v~~~~ 761 (2051)
T 2uv8_G 690 VASEYIETL--GLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSF---EDAHTPMLQMY---SKIRRHP 761 (2051)
T ss_dssp HHHHHHHHS--CCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCS---CCSSHHHHHHH---HHHTTCT
T ss_pred hHHHHHHHc--CCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCc---ccccccHHHHH---HHHHhcC
Confidence 222223232 565554 33345566788888999993 22 3334443321 11223333333 4445556
Q ss_pred CCcEEecCCCCCHHHHHHHH-----------HhCCCEEEecccccCCCCCCccceeec
Q 010640 351 GVPVIADGGISNSGHIVKAL-----------VLGASTVMMGSFLAGSTEAPGAYVYQN 397 (505)
Q Consensus 351 ~ipvIa~GGI~~~~di~kal-----------~lGA~~V~~G~~f~~~~Es~~~~~~~~ 397 (505)
++|||++|||.++++++.|| +|||++|+|||+|+.|.||+.+..+|+
T Consensus 762 ~ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea~~~~~~K~ 819 (2051)
T 2uv8_G 762 NIMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDAKK 819 (2051)
T ss_dssp TBCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTSCCCHHHHH
T ss_pred CceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcccccCHHHHH
Confidence 89999999999999999999 899999999999999999999988874
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=123.59 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=97.5
Q ss_pred cCCccc---cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc-c-c----ccccccccccc
Q 010640 104 RRVPIF---SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN-L-S----DNKVKIFDYMR 171 (505)
Q Consensus 104 ~~~~~~---~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~-~-~----~~~~~v~~im~ 171 (505)
..++|. .++ +++++++++.++++.|.+ ++ +||+| +++++|+||.+|+.. . . ....++.++|+
T Consensus 8 v~~im~~~~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~ 81 (135)
T 2rc3_A 8 VKHLLQEKGHTV--VAIGPDDSVFNAMQKMAADNIGALLVMK----DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMT 81 (135)
T ss_dssp HHHHHHHHCCCC--CEECTTSBHHHHHHHHHHHTCSEEEEEE----TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSB
T ss_pred HHHHHhcCCCCc--EEECCCCcHHHHHHHHHhcCCCEEEEEE----CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhcc
Confidence 334565 567 899999999999999988 76 99998 689999999999962 2 1 24678999999
Q ss_pred cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 172 DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 172 ~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
+ ++.++.+++++.++++.|.+++++.+||+|+|+++|+||++|+++...
T Consensus 82 ~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dll~~~~ 130 (135)
T 2rc3_A 82 R--QVAYVDLNNTNEDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDAI 130 (135)
T ss_dssp C--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred C--CCeEECCCCcHHHHHHHHHHhCCCEEEEEeCCEEEEEEEHHHHHHHHH
Confidence 8 999999999999999999999999999999999999999999998764
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=122.73 Aligned_cols=113 Identities=15% Similarity=0.251 Sum_probs=99.7
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc-c-cc---ccccccccccccCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE-N-LS---DNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~-~-~~---~~~~~v~~im~~~~ 174 (505)
+..++|..++ +++++++++.++++.|.+ ++ +||+|+ +|+++|+||.+|+. . .. ....++.++|++
T Consensus 8 ~v~~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~-- 80 (138)
T 2yzi_A 8 PIKVYMTKKL--LGVKPSTSVQEASRLMMEFDVGSLVVIND---DGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR-- 80 (138)
T ss_dssp BGGGTCBCCC--CEECTTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--
T ss_pred hHHHHhcCCC--eEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhC--
Confidence 4556777778 899999999999999988 76 999997 89999999999994 2 21 235789999998
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+++++++++++.+++++|.+++.+++ |+|+ |+++|+||++|+++....
T Consensus 81 ~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 81 NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999 9997 999999999999998754
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=121.55 Aligned_cols=109 Identities=19% Similarity=0.156 Sum_probs=96.5
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----ccccccccccccCCCce
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----DNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----~~~~~v~~im~~~~~~~ 177 (505)
++|..++ +++++++++.++++.|.+ ++ +||+| +++++|+||.+|+.... ....++.++|++ ++.
T Consensus 5 ~~m~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~--~~~ 76 (125)
T 1pbj_A 5 DVMVTDV--DTIDITASLEDVLRNYVENAKGSSVVVK----EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLV 76 (125)
T ss_dssp HHCBCSC--CEEETTCBHHHHHHHHHHHCCCEEEEEE----TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGG
T ss_pred HhcCCCc--eEECCCCcHHHHHHHHHHcCCCEEEEEe----CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCC--CCe
Confidence 3566677 899999999999999988 66 99998 69999999999996321 136789999998 999
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
++.+++++.++++.|.+++.+.+||+|+|+++|+||++|+++...
T Consensus 77 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~Gvit~~dl~~~l~ 121 (125)
T 1pbj_A 77 TISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAKM 121 (125)
T ss_dssp EECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHC
T ss_pred EECCCCCHHHHHHHHHhcCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=130.30 Aligned_cols=112 Identities=18% Similarity=0.207 Sum_probs=99.5
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc------cccccccccccccC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL------SDNKVKIFDYMRDC 173 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~------~~~~~~v~~im~~~ 173 (505)
+..++|.+++ +++++++++.+|+++|.+ ++ +||+|+ +|+++|+||.+|+... .....++.++|++
T Consensus 10 ~v~~im~~~~--~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~- 83 (184)
T 1pvm_A 10 RVEKIMNSNF--KTVNWNTTVFDAVKIMNENHLYGLVVKDD---NGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK- 83 (184)
T ss_dssp BGGGTSBTTC--CEEETTCBHHHHHHHHHHHTCCEEEEECT---TSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS-
T ss_pred CHHHhcCCCC--eEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCC-
Confidence 4456777777 899999999999999988 76 999987 7999999999999632 1245689999998
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++.+++++.+++++|.+++.+.+||+|+ |+++|+||+.||++..
T Consensus 84 -~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~ 131 (184)
T 1pvm_A 84 -PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 131 (184)
T ss_dssp -SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred -CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999864
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=123.37 Aligned_cols=112 Identities=12% Similarity=0.150 Sum_probs=97.7
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccc-ccc----cccccccccccccCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDW-ENL----SDNKVKIFDYMRDCS 174 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl-~~~----~~~~~~v~~im~~~~ 174 (505)
+..++|..++ +++++++++.++++.|.+ ++ +||+|+ +++++|+||.+|+ ... .....++.++|++
T Consensus 9 ~v~~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~-- 81 (138)
T 2p9m_A 9 KVKDVMTKNV--ITAKRHEGVVEAFEKMLKYKISSLPVIDD---ENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK-- 81 (138)
T ss_dssp BGGGTSBCSC--CCEETTSBHHHHHHHHHHHTCCEEEEECT---TCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCS--
T ss_pred CHHHhhcCCc--eEECCCCcHHHHHHHHHHCCCcEEEEECC---CCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCC--
Confidence 3446777777 899999999999999988 66 999997 8999999999999 521 1246689999998
Q ss_pred CceEecCCCCHHHHHHHHHHCC-----CCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 175 SNVSVPANYDLGQIDEVLEKND-----VDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~-----i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++.++++++++.++++.|.+++ .+.+||+|+ |+++|+||+.|+++..
T Consensus 82 ~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~ 134 (138)
T 2p9m_A 82 DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTI 134 (138)
T ss_dssp SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHH
Confidence 9999999999999999999999 999999997 9999999999999865
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-14 Score=124.78 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=98.5
Q ss_pred hccCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----------cccccc
Q 010640 102 KSRRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----------DNKVKI 166 (505)
Q Consensus 102 ~~~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----------~~~~~v 166 (505)
....++|.. ++ ++++++.++.+|++.|.+ ++ +||+|+ +|+++|+||.+|+.... ....++
T Consensus 11 ~~v~~im~~~~~~--~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v 85 (157)
T 2emq_A 11 MTVKPFLIPADKV--AHVQPGNYLDHALLVLTKTGYSAIPVLDT---SYKLHGLISMTMMMDAILGLERIEFERLETMKV 85 (157)
T ss_dssp CBSTTTCEEGGGS--CCBCTTSBHHHHHHHHHHSSSSEEEEECT---TCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBG
T ss_pred CcHHhhccCCccc--eEECCCCcHHHHHHHHHHCCceEEEEEcC---CCCEEEEeeHHHHHHHHhcccccchHHhcCCcH
Confidence 355667876 67 899999999999999988 66 999997 89999999999996321 135689
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 167 FDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 167 ~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.++|.+ +++++++++++.++++.|.++++ +||+|+ |+++|+||++|+++....
T Consensus 86 ~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~ 139 (157)
T 2emq_A 86 EEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK 139 (157)
T ss_dssp GGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred HHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence 999998 99999999999999999999987 999998 999999999999988653
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=123.03 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=95.0
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------ccccccccccccCC---
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------DNKVKIFDYMRDCS--- 174 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~v~~im~~~~--- 174 (505)
+|..++ +++++++++.++++.|.+ ++ +||+|+ +++++|+||.+|+.... ....++.++|.+..
T Consensus 16 ~~~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~ 90 (144)
T 2nyc_A 16 ITQDNM--KSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDF 90 (144)
T ss_dssp CBCSSC--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC---
T ss_pred CCCCCc--eEECCCCcHHHHHHHHHHcCcceeeEEcC---CCcEEEEEcHHHHHHHhcccccccCCccHHHHHhcCcccc
Confidence 666677 899999999999999988 76 999997 89999999999996321 12568999997521
Q ss_pred -CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 -SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 -~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++.+++++.+++++|.+++.+.+||+|+ |+++|+||++||++...
T Consensus 91 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~ 140 (144)
T 2nyc_A 91 EGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 140 (144)
T ss_dssp ---CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred CCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 5789999999999999999999999999998 99999999999998753
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.45 E-value=9e-15 Score=159.93 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=122.0
Q ss_pred eeeeecCcccccceEEEccchh-hhH----HHHHHHHHHcCCeeEEc---CCCCHHHHHHHHHhhhccCCccc--cCCCe
Q 010640 45 LSTRLTRNIDLSLPCVASPMDT-VTE----DYMAAAMAALGGIGIVH---SNCTAADQARLVVSAKSRRVPIF--SSSLD 114 (505)
Q Consensus 45 ~~~~lt~~~~l~~Pli~a~m~~-vt~----~~ma~al~~~Gg~g~i~---~~~~~~~~~~~v~~v~~~~~~~~--~~p~~ 114 (505)
+..|+|+++....|+|.+.+-. .+. ..+...+.+..++.... .+.. +-.+..++|. +++
T Consensus 397 i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~---------~~~~V~diM~p~~~v-- 465 (632)
T 3org_A 397 IIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRS---------PEMTAREIMHPIEGE-- 465 (632)
T ss_dssp HHHHHTCCCSCSHHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCEEEEECTTCC---------TTSBHHHHCBCTTTS--
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCcccccccccc---------ccCcHHHHhhcCCCc--
Confidence 7899999999999998877522 111 12333334444544331 1110 1123445777 667
Q ss_pred eEeCCCCCHHHHHHHhc-C-Ce--EEEEeCCCCCCeEEEEEecccccccccc----------------------------
Q 010640 115 VFKAPDGCINDANDFDG-S-NY--VFVTESGTRRSRILGYVTKSDWENLSDN---------------------------- 162 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~-~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~---------------------------- 162 (505)
+++++++|++|+.+.|. + ++ +||+|+ +++++|+||.+|++.....
T Consensus 466 ~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (632)
T 3org_A 466 PHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIE 542 (632)
T ss_dssp CCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TCBBCCEESHHHHTTTTTTC---------------------------
T ss_pred eEecCCCcHHHHHHHHHhcCCcceEEEEec---CCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccCHHHHHhhcc
Confidence 89999999999999999 7 66 999998 8999999999999632100
Q ss_pred ------------------------ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhh
Q 010640 163 ------------------------KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVE 218 (505)
Q Consensus 163 ------------------------~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil 218 (505)
..++.++|++ +++++++++++.+++++|.+++++++||+|+|+++||||++|++
T Consensus 543 ~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVve~G~lvGIVT~~Dll 620 (632)
T 3org_A 543 GLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVTERGKLVGIVEREDVA 620 (632)
T ss_dssp ----------------------------CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEEETTEEEEEEEGGGTE
T ss_pred cCCCCCcccchhhhcccceEeeccccccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehhhHH
Confidence 0137889999 99999999999999999999999999999669999999999999
Q ss_pred hhhcC
Q 010640 219 RLKGY 223 (505)
Q Consensus 219 ~~~~~ 223 (505)
+....
T Consensus 621 ~~~~~ 625 (632)
T 3org_A 621 YGYSN 625 (632)
T ss_dssp ECCCC
T ss_pred HHHhh
Confidence 87643
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.7e-14 Score=133.80 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=93.3
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-------------------
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------------------- 160 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------------------- 160 (505)
+..++|..+| +++++++++.+|+++|.+ ++ +||+|+ +|+++|+||.+|+....
T Consensus 8 ~v~~im~~~~--~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v 82 (245)
T 3l2b_A 8 KVEDLEMDKI--APLAPEVSLKMAWNIMRDKNLKSIPVADG---NNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNI 82 (245)
T ss_dssp BGGGSCCBCC--CCBCTTCBHHHHHHHHHHTTCSEEEEECT---TCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred cHHHhcCCCC--cEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence 4557888888 999999999999999998 77 999997 89999999999985110
Q ss_pred --------------------------------------------------------------------------------
Q 010640 161 -------------------------------------------------------------------------------- 160 (505)
Q Consensus 161 -------------------------------------------------------------------------------- 160 (505)
T Consensus 83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~ 162 (245)
T 3l2b_A 83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKK 162 (245)
T ss_dssp HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHH
T ss_pred HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHH
Confidence
Q ss_pred -------------------ccccccccccc-cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 161 -------------------DNKVKIFDYMR-DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 161 -------------------~~~~~v~~im~-~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
....++.++|+ + +++++++++++.+++++|.+++++++||+|+ |+++|+||++|+++
T Consensus 163 ~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~ 240 (245)
T 3l2b_A 163 NNITVITTPHDSFTASRLIVQSLPVDYVMTKD--NLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLIS 240 (245)
T ss_dssp HTCEEEECSSCHHHHHHHGGGGSBHHHHSBCT--TCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC----
T ss_pred cCCeEEEeCCChHHHHHHHhcCCceeeEecCC--ccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhc
Confidence 01246889999 6 9999999999999999999999999999998 99999999999998
Q ss_pred hh
Q 010640 220 LK 221 (505)
Q Consensus 220 ~~ 221 (505)
..
T Consensus 241 ~~ 242 (245)
T 3l2b_A 241 TH 242 (245)
T ss_dssp --
T ss_pred hh
Confidence 64
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-14 Score=127.37 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=97.8
Q ss_pred ccCCccccC----CCeeEe--CCCCCHHHHHHHhcC-Ce--EEEE--eCCCCCCeEEEEEecccccccc-----------
Q 010640 103 SRRVPIFSS----SLDVFK--APDGCINDANDFDGS-NY--VFVT--ESGTRRSRILGYVTKSDWENLS----------- 160 (505)
Q Consensus 103 ~~~~~~~~~----p~~~~v--~~~~tv~~a~~~~~~-~~--~pVv--d~~~~~g~lvGivt~~Dl~~~~----------- 160 (505)
+..++|..+ + +++ ++++++.+|+++|.+ ++ +||+ |+ +++++|+||.+|+....
T Consensus 12 ~v~dim~~~~~~~~--~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~---~~~lvGiit~~dl~~~~~~~~~~~~~~~ 86 (185)
T 2j9l_A 12 LAMDVMKPRRNDPL--LTVLTQDSMTVEDVETIISETTYSGFPVVVSRE---SQRLVGFVLRRDLIISIENARKKQDGVV 86 (185)
T ss_dssp BHHHHSBSCTTSCC--CCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT---TCBEEEEEEHHHHHHHHHHHHTSCSCCC
T ss_pred cHHHHhcccccCce--EEEecCCCccHHHHHHHHHhcCCCceeEEEECC---CCeEEEEEEHHHHHHHHHhhcccCCCcc
Confidence 344566665 6 778 999999999999988 76 9999 66 89999999999986221
Q ss_pred ------------------ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 161 ------------------DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 161 ------------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
....++.++|++ +++++.+++++.+++++|.+++.+.+||+|+|+++|+||++||++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~g~~vGiit~~dll~~l~ 164 (185)
T 2j9l_A 87 STSIIYFTEHSPPLPPYTPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIA 164 (185)
T ss_dssp TTCEEECSSSCCCCCTTCCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred ccceeecccCCcccccccccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEECCEEEEEEEHHHHHHHHH
Confidence 235689999998 999999999999999999999999999999999999999999998764
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=122.09 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=96.6
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC---Ce-EEEEeCCCCCCeEEEEEeccccccc-------------------
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS---NY-VFVTESGTRRSRILGYVTKSDWENL------------------- 159 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~---~~-~pVvd~~~~~g~lvGivt~~Dl~~~------------------- 159 (505)
+..++|..++ +++++++|+.+|+++|.+ +. +||+|+ + +++|+||.+|+...
T Consensus 17 ~v~~im~~~~--~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~---~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~ 90 (157)
T 1o50_A 17 DVCKLISLKP--TVVEEDTPIEEIVDRILEDPVTRTVYVARD---N-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSM 90 (157)
T ss_dssp HHTTSSCCCC--EEECTTCBHHHHHHHHHHSTTCCEEEEEET---T-EEEEEEEHHHHHHHHHHHHHCCCC-------CC
T ss_pred cHhhcccCCC--ceECCCCCHHHHHHHHHhCCCCccEEEEEC---C-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHH
Confidence 4556788888 999999999999999976 45 799996 6 99999999999632
Q ss_pred -cccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 160 -SDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 160 -~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.....++.++|++ ++++.+++++.+++++|.+++++.+||+|+ |+++|+||+.||++...
T Consensus 91 ~~~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~ 152 (157)
T 1o50_A 91 KRLIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW 152 (157)
T ss_dssp CCCSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred HHHcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence 1245689999984 789999999999999999999999999997 99999999999998764
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-13 Score=124.02 Aligned_cols=104 Identities=12% Similarity=0.159 Sum_probs=92.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--c----ccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL--S----DNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~--~----~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
+++++++++.+|+++|.+ ++ +||++ +++++|+||.+|+... . ....++.++|++ +++++.+++++
T Consensus 24 ~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l 97 (157)
T 4fry_A 24 YTVTKNDFVYDAIKLMAEKGIGALLVVD----GDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQST 97 (157)
T ss_dssp CEEETTSBHHHHHHHHHHHTCSEEEEES----SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBH
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEee----CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcH
Confidence 789999999999999998 76 88854 7999999999999621 1 246789999998 99999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCC
Q 010640 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYP 224 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~ 224 (505)
.+++++|.+++++++||+|+|+++|+||++||++.....
T Consensus 98 ~~~~~~m~~~~~~~lpVvd~g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 98 DECMALMTEHRMRHLPVLDGGKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp HHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHHH
Confidence 999999999999999999999999999999999987643
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-14 Score=125.40 Aligned_cols=109 Identities=14% Similarity=0.049 Sum_probs=95.6
Q ss_pred CCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc----------ccccccccc
Q 010640 105 RVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----------DNKVKIFDY 169 (505)
Q Consensus 105 ~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----------~~~~~v~~i 169 (505)
.++|.. ++ +++++++++.+++++|.+ ++ +||+|+ +++++|+||.+|+.... ....++.++
T Consensus 17 ~~im~~~~~~--~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~ 91 (159)
T 1yav_A 17 GQFMIEADKV--AHVQVGNNLEHALLVLTKTGYTAIPVLDP---SYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEV 91 (159)
T ss_dssp HHHSEEGGGS--CCEETTCBHHHHHHHHHHHCCSEEEEECT---TCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHH
T ss_pred HHHhCCccce--EEECCCCcHHHHHHHHHhCCCcEEEEECC---CCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHh
Confidence 346666 67 899999999999999998 77 999997 88999999999996321 235689999
Q ss_pred cccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 170 MRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 170 m~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
|.+ +++++.+++++.+++++|.++++ +||+|+ |+++|+||++|+++...
T Consensus 92 m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~ 141 (159)
T 1yav_A 92 MLT--DIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELN 141 (159)
T ss_dssp SBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHH
T ss_pred cCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHH
Confidence 998 99999999999999999999887 999997 99999999999998764
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=123.32 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=96.1
Q ss_pred CCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-c--------ccccccccccc
Q 010640 105 RVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-D--------NKVKIFDYMRD 172 (505)
Q Consensus 105 ~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~--------~~~~v~~im~~ 172 (505)
.++|..++ +++++++++.+|+++|.+ ++ +||+|++ ++++++|+||.+|+.... . ...++.++|.+
T Consensus 16 ~dim~~~~--~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~ 92 (164)
T 2pfi_A 16 EHFMNHSI--TTLAKDTPLEEVVKVVTSTDVTEYPLVEST-ESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILAR 92 (164)
T ss_dssp HHHCBCCC--CCEETTCBHHHHHHHHHTCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHT
T ss_pred HHHcCCCC--eEECCCCcHHHHHHHHHhCCCCceeEEecC-CCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhcc
Confidence 34677777 899999999999999998 76 9999830 158999999999996321 1 23578999987
Q ss_pred CCC------ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 173 CSS------NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 173 ~~~------~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
+ ++++.+++++.+++++|.+++++.+||+|+|+++|+||++||++...
T Consensus 93 --~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~g~l~Giit~~dil~~~~ 146 (164)
T 2pfi_A 93 --GCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRGRAVGCVSWVEMKKAIS 146 (164)
T ss_dssp --TCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred --cccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEHHHHHHHHH
Confidence 5 78999999999999999999999999999999999999999998754
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.8e-13 Score=129.53 Aligned_cols=112 Identities=10% Similarity=0.068 Sum_probs=98.4
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc------ccc--------------
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE------NLS-------------- 160 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~------~~~-------------- 160 (505)
..++|..++ +++++++++.++.+.|.+ ++ +||+|+ +++++|+||.+|+. ...
T Consensus 128 v~~~m~~~~--~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 202 (282)
T 2yzq_A 128 IEPYYQRYV--SIVWEGTPLKAALKALLLSNSMALPVVDS---EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI 202 (282)
T ss_dssp STTTSBSCC--CCEETTSBHHHHHHHHHTCSSSEEEEECT---TSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred HHHHhCCCC--EEECCCCCHHHHHHHHHHcCCcEEEEEcC---CCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhh
Confidence 446777777 899999999999999998 66 999997 88999999999986 211
Q ss_pred ---------------ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 161 ---------------DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 161 ---------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
....++.++|++ +++++.+++++.+++++|.+++++++||+|+ |+++|+||++|+++...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~ 278 (282)
T 2yzq_A 203 LESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV 278 (282)
T ss_dssp ----------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGC
T ss_pred cccchHHHHhHhhhhhccCCHHHhcCC--CCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHH
Confidence 024679999998 9999999999999999999999999999999 89999999999999764
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-13 Score=130.21 Aligned_cols=116 Identities=11% Similarity=0.090 Sum_probs=96.4
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--------c---------
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--------D--------- 161 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--------~--------- 161 (505)
..+.++|..++ +++.+++++.++.++|.+ ++ +||||++ .+++|+|+||.+||.... .
T Consensus 13 ~~v~diMt~~v--vtv~~~~tv~~~~~lm~~~~~~~~PVVd~~-~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~ 89 (250)
T 2d4z_A 13 IQVGDIMVRDV--TSIASTSTYGDLLHVLRQTKLKFFPFVDTP-DTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD 89 (250)
T ss_dssp CBTTSSSBSSC--CCEETTCBHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred CChHHhcCCCC--eEECCCCCHHHHHHHHHhcCCCEEEEEecC-CCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence 35668999988 999999999999999998 77 9999861 126899999999985210 0
Q ss_pred --------------------------------------------------------------------------------
Q 010640 162 -------------------------------------------------------------------------------- 161 (505)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (505)
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (250)
T 2d4z_A 90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE 169 (250)
T ss_dssp CC---------------------------------------------------------------------------CCS
T ss_pred ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence
Q ss_pred --------------ccccc--c-cccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 162 --------------NKVKI--F-DYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 162 --------------~~~~v--~-~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
...++ . .+|.+ .++++.+++++.++..+|...+++++||+++|+|+||||++||++++.
T Consensus 170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 170 MLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp CCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred ccChhhhhhHHHHhcCceeccccccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHH
Confidence 00111 1 36888 899999999999999999999999999998899999999999999875
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-12 Score=125.64 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=118.6
Q ss_pred ccHHHHHHHHHH-cCccEEEEeCCCC-----------CchhHHHHHHHHHHhCCCceEEEc---ccCC-HHHHHHHHHcC
Q 010640 247 ESDKERLEHLVK-AGVNVVVLDSSQG-----------NSSFQIEMIKYAKKTYPELDVIGG---NVVT-MYQAQNLIEAG 310 (505)
Q Consensus 247 ~~~~e~~~~lie-aGad~I~i~~~~g-----------~~~~~~~~i~~l~~~~~~~~Vi~g---~V~t-~e~a~~l~~aG 310 (505)
++..+.++.+.+ +|+|.+.++..+. ....+.+.++.+++.. ++||+++ ++.+ .+.++.+.++|
T Consensus 111 ~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~-~~pv~vk~~~~~~~~~~~a~~l~~~G 189 (311)
T 1ep3_A 111 ADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS-KVPLYVKLSPNVTDIVPIAKAVEAAG 189 (311)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCChHHHHHHHHHHHHcC
Confidence 345555666666 8999999976532 1234578888888886 7888885 3334 55689999999
Q ss_pred CCEEEEccCCcce--ee-ccc------ccccCcChH--HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 311 VDGLRVGMGSGSI--CT-TQE------VCAVGRGQA--TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 311 ad~I~v~~g~g~~--~~-~~~------~~g~g~p~~--~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+|+|.+.+...+. .. ++. ..++..+.. ..+..+.+..+..++|||++|||.++.|+.+++++|||+|++
T Consensus 190 ~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~v 269 (311)
T 1ep3_A 190 ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAV 269 (311)
T ss_dssp CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 9999996422111 10 110 011111211 123344444455689999999999999999999999999999
Q ss_pred cccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHh
Q 010640 380 GSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGF 459 (505)
Q Consensus 380 G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m 459 (505)
|+.|+.. ..++.++..+++..|
T Consensus 270 g~~~l~~----------------------------------------------------------p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 270 GTANFAD----------------------------------------------------------PFVCPKIIDKLPELM 291 (311)
T ss_dssp CTHHHHC----------------------------------------------------------TTHHHHHHHHHHHHH
T ss_pred CHHHHcC----------------------------------------------------------cHHHHHHHHHHHHHH
Confidence 9998531 034567889999999
Q ss_pred hccCCCCHHHHHHhhh
Q 010640 460 QDLGASSLQSAHDLLR 475 (505)
Q Consensus 460 ~~~G~~~~~~l~~~~~ 475 (505)
...|+++++||+..+.
T Consensus 292 ~~~g~~~~~~~~g~~~ 307 (311)
T 1ep3_A 292 DQYRIESLESLIQEVK 307 (311)
T ss_dssp HHTTCSCHHHHHHHHH
T ss_pred HHcCCCCHHHHhChhc
Confidence 9999999999998753
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=128.79 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=97.9
Q ss_pred CCccccCCCeeEeCCCCCHHHHHHHhcC-C-----e--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCc
Q 010640 105 RVPIFSSSLDVFKAPDGCINDANDFDGS-N-----Y--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 105 ~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~-----~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~ 176 (505)
.++|..++ +++++++|+.++++.|.+ + + +||+|+ +++++|+||.+|+... ....++.++|++ ++
T Consensus 138 ~~iM~~~~--~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~~lvGivt~~dll~~-~~~~~v~~im~~--~~ 209 (278)
T 2yvy_A 138 GGLMTPEY--VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KGRLKGVLSLRDLIVA-DPRTRVAEIMNP--KV 209 (278)
T ss_dssp GGTCBSCC--CEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TCBEEEEEEHHHHHHS-CTTCBSTTTSBS--SC
T ss_pred HhhcCCCc--eEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CCCEEEEEEHHHHhcC-CCCCcHHHHhCC--CC
Confidence 35787777 999999999999999875 2 3 999997 8999999999999643 346789999988 99
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++++++.+++++|.++++..+||||+ |+++|+||.+|+++...
T Consensus 210 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~ 256 (278)
T 2yvy_A 210 VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE 256 (278)
T ss_dssp CCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC-
T ss_pred eEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999999864
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=138.46 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=105.8
Q ss_pred HHHHHHHhhhccC-----CccccCCCeeEeCCCCCHHHHHHHhcC-C-----e--EEEEeCCCCCCeEEEEEeccccccc
Q 010640 93 DQARLVVSAKSRR-----VPIFSSSLDVFKAPDGCINDANDFDGS-N-----Y--VFVTESGTRRSRILGYVTKSDWENL 159 (505)
Q Consensus 93 ~~~~~v~~v~~~~-----~~~~~~p~~~~v~~~~tv~~a~~~~~~-~-----~--~pVvd~~~~~g~lvGivt~~Dl~~~ 159 (505)
+++..++++.++. ++|..++ +++++++|+.++++.|++ + + +||+|+ +++++|+||.+|+...
T Consensus 141 ~~~~~i~~~l~~~~~~v~~iM~~~~--v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~~lvGiVt~~Dll~~ 215 (473)
T 2zy9_A 141 RTRAEVEALARYEEDEAGGLMTPEY--VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KGRLKGVLSLRDLIVA 215 (473)
T ss_dssp HHHHHHHHHHTSCTTBSTTTCBSCE--EEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TSBEEEEEEHHHHHHS
T ss_pred HHHHHHHHHhcCCCCCHHHhCCCCc--eEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CCcEEEEEEHHHHhcC
Confidence 4455666665554 5788777 999999999999999976 3 3 999997 8999999999999643
Q ss_pred cccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 160 SDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 160 ~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
..+.++.++|++ +++++++++++.++++.|.++++..+||||+ |+++|+||.+|+++...
T Consensus 216 -~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~ 276 (473)
T 2zy9_A 216 -DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE 276 (473)
T ss_dssp -CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred -CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHH
Confidence 356789999998 9999999999999999999999999999998 99999999999998754
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=129.20 Aligned_cols=120 Identities=16% Similarity=0.166 Sum_probs=102.5
Q ss_pred HHHHHhhhccC-----CccccCCCeeEeCCCCCHHHHHHHhcC-C-----e--EEEEeCCCCCCeEEEEEeccccccccc
Q 010640 95 ARLVVSAKSRR-----VPIFSSSLDVFKAPDGCINDANDFDGS-N-----Y--VFVTESGTRRSRILGYVTKSDWENLSD 161 (505)
Q Consensus 95 ~~~v~~v~~~~-----~~~~~~p~~~~v~~~~tv~~a~~~~~~-~-----~--~pVvd~~~~~g~lvGivt~~Dl~~~~~ 161 (505)
+..++++..+. ++|.+++ +++++++|+.++++.|.+ + + +||+|+ +++++|+||.+|+... .
T Consensus 125 ~~~i~~ll~~~~~~v~~iM~~~~--~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~~lvGivt~~dll~~-~ 198 (286)
T 2oux_A 125 AGEIKELLHYEDETAGAIMTTEF--VSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---ENHLVGVISLRDLIVN-D 198 (286)
T ss_dssp HHHHHHHTTSCTTBHHHHCBSCC--CEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TCBEEEEEEHHHHTTS-C
T ss_pred HHHHHHHhcCChHHHHHhCCCCc--eEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CCeEEEEEEHHHHHcC-C
Confidence 34445544443 4777777 999999999999999875 2 2 999997 8999999999999643 3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
...++.++|++ +++++++++++.+++++|.++++..+||||+ |+++|+||..|+++...
T Consensus 199 ~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~ 258 (286)
T 2oux_A 199 DDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 258 (286)
T ss_dssp TTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred CCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence 46789999998 9999999999999999999999999999998 99999999999998754
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=158.32 Aligned_cols=137 Identities=12% Similarity=0.206 Sum_probs=94.7
Q ss_pred HHHHHHHHHcC--ccEEEEeCCCCCc--hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCC------EEEEc-c
Q 010640 250 KERLEHLVKAG--VNVVVLDSSQGNS--SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVD------GLRVG-M 318 (505)
Q Consensus 250 ~e~~~~lieaG--ad~I~i~~~~g~~--~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad------~I~v~-~ 318 (505)
.+.++.+++.| +|.+.+.. |.+ +...++++.+++. ++.++.=.+.+.+.++++.+.|+| +|++. .
T Consensus 504 ~~~~~~~~~~g~~vdgv~~~a--G~P~~ee~~~~i~~l~~~--Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~ 579 (3089)
T 3zen_D 504 KRLVQRARQSGAPIDGLVVSA--GIPDLEEAVDIIDELNEV--GISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGG 579 (3089)
T ss_dssp HHHHHHHHHTTCSCCEEEEES--SCCCHHHHHHHHTSTTHH--HHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCS
T ss_pred HHHHHHHHHcCCCceEEEEeC--CCCchhHhHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCC
Confidence 35677888889 56677643 443 2233455555554 444443257789999999999999 67664 4
Q ss_pred CCcceeecccccccCcChHHHHHHHH-HHHhhcCCcEEecCCCCCHHHHHHHH-----------HhCCCEEEecccccCC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVS-SIAAQSGVPVIADGGISNSGHIVKAL-----------VLGASTVMMGSFLAGS 386 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~-~~~~~~~ipvIa~GGI~~~~di~kal-----------~lGA~~V~~G~~f~~~ 386 (505)
.+|++.... +....+.... +..+..++|||++|||.++++++.++ ++|||+|+|||+|+.|
T Consensus 580 eaGGH~g~~-------~~~~ll~~~~~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t 652 (3089)
T 3zen_D 580 RAGGHHSWE-------DLDDLLLATYSELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMAT 652 (3089)
T ss_dssp SSSEECCSC-------CHHHHHHHHHHHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred CcCCCCCcc-------cHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhC
Confidence 444443321 2233332222 22333579999999999999999999 9999999999999999
Q ss_pred CCCCccceeec
Q 010640 387 TEAPGAYVYQN 397 (505)
Q Consensus 387 ~Es~~~~~~~~ 397 (505)
.||..+..+++
T Consensus 653 ~Ea~~s~~~K~ 663 (3089)
T 3zen_D 653 LEATTSPQVKQ 663 (3089)
T ss_dssp TTSCBCHHHHH
T ss_pred cccCCCHHHHH
Confidence 99998877663
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=130.61 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=97.4
Q ss_pred cccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------ccccccccccccCC----
Q 010640 108 IFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------DNKVKIFDYMRDCS---- 174 (505)
Q Consensus 108 ~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~v~~im~~~~---- 174 (505)
|..++ +++++++++.++.+.|.+ ++ +||+|+ +|+++|+||.+|+.... ....++.++|++..
T Consensus 196 m~~~~--~~v~~~~~~~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~ 270 (323)
T 3t4n_C 196 TQDNM--KSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFE 270 (323)
T ss_dssp BCTTC--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGGSCTTCC
T ss_pred CCCCc--EEECCCCcHHHHHHHHHHcCCCEEEEECC---CCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhhccccCC
Confidence 66777 899999999999999998 76 999997 89999999999996321 23568999998744
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++.+++++.+++++|.+++++++||+|+ |+++|+||++||++...
T Consensus 271 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~ 319 (323)
T 3t4n_C 271 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL 319 (323)
T ss_dssp CCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHH
Confidence 6899999999999999999999999999998 99999999999999864
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.7e-13 Score=128.81 Aligned_cols=111 Identities=17% Similarity=0.264 Sum_probs=97.7
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc----------------cc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD----------------NK 163 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~----------------~~ 163 (505)
...+.|..++ +++++++++.++++.|.+ ++ +||++ +|+++|+||.+|+..... ..
T Consensus 149 ~v~~~m~~~~--~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~ 222 (280)
T 3kh5_A 149 VIDDYITRDV--IVATPGERLKDVARTMVRNGFRRLPVVS----EGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITN 222 (280)
T ss_dssp BSGGGCBCSC--CCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHH
T ss_pred CHHHHhCCCC--eEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhC
Confidence 3456777777 899999999999999998 76 99994 799999999999862211 35
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++.++|++ +++++++++++.++++.|.+++++++||+|+ |+++|+||++||++..
T Consensus 223 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 223 VRMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp CBHHHHSBS--SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred CcHHHHhcC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence 689999998 9999999999999999999999999999999 8999999999999874
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-12 Score=127.10 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=120.5
Q ss_pred CccHHHHHHHHHHcCcc-EEEEeCCCC----------CchhHHHHHHHHHHhCCCceEEEcccC--CHHH----HHHHHH
Q 010640 246 RESDKERLEHLVKAGVN-VVVLDSSQG----------NSSFQIEMIKYAKKTYPELDVIGGNVV--TMYQ----AQNLIE 308 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad-~I~i~~~~g----------~~~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~----a~~l~~ 308 (505)
.+++.+.++.+.++|+| ++.++.++. ......+.++++++.. ++||+++-.. +.++ ++.+.+
T Consensus 105 ~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~~~~~~~~~a~~~~~ 183 (311)
T 1jub_A 105 AAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHFDIMAEILNQ 183 (311)
T ss_dssp HHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 35677788888899999 999987532 2234567788888776 7899886332 3333 678888
Q ss_pred cCCCEEEEccCCcc---eeec-c--------ccccc-CcC-hHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHh
Q 010640 309 AGVDGLRVGMGSGS---ICTT-Q--------EVCAV-GRG-QATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVL 372 (505)
Q Consensus 309 aGad~I~v~~g~g~---~~~~-~--------~~~g~-g~p-~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~l 372 (505)
+|+|+|.+.+..+. +... + ...|+ |.+ ...++..+.+..+.. ++|||+.|||.++.|+.+++++
T Consensus 184 ~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~ 263 (311)
T 1jub_A 184 FPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLC 263 (311)
T ss_dssp SCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHH
T ss_pred cCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHc
Confidence 99999998754211 1100 0 01111 211 122344555555556 7999999999999999999999
Q ss_pred CCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHH
Q 010640 373 GASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTM 452 (505)
Q Consensus 373 GA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~ 452 (505)
|||+|++||.|+. +| + .+++++.
T Consensus 264 GAd~V~vg~~~l~----------------------------------------------~~---------p--~~~~~i~ 286 (311)
T 1jub_A 264 GATMLQIGTALHK----------------------------------------------EG---------P--AIFDRII 286 (311)
T ss_dssp TCSEEEECHHHHH----------------------------------------------HC---------T--HHHHHHH
T ss_pred CCCEEEEchHHHh----------------------------------------------cC---------c--HHHHHHH
Confidence 9999999999852 01 1 4667899
Q ss_pred HHHHHHhhccCCCCHHHHHHh
Q 010640 453 QAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 453 ~~l~~~m~~~G~~~~~~l~~~ 473 (505)
++|+..|...|+++++||+..
T Consensus 287 ~~l~~~l~~~g~~si~e~~g~ 307 (311)
T 1jub_A 287 KELEEIMNQKGYQSIADFHGK 307 (311)
T ss_dssp HHHHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHHHcCCCCHHHHhCh
Confidence 999999999999999999865
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-12 Score=125.15 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=100.8
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---ccccccccccccCCCc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---DNKVKIFDYMRDCSSN 176 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---~~~~~v~~im~~~~~~ 176 (505)
...++|..++ +++++++++.++++.|.+ ++ +||+|+ +++++|++|.+|+.... ....++.++|++ ++
T Consensus 94 ~v~~im~~~~--~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~~lvGivt~~dl~~~~~~~~~~~~v~~~m~~--~~ 166 (296)
T 3ddj_A 94 PIIDYMTPNP--VTVYNTSDEFTAINIMVTRNFGSLPVVDI---NDKPVGIVTEREFLLLYKDLDEIFPVKVFMST--KV 166 (296)
T ss_dssp BGGGTSEESC--CCEETTSCHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHGGGGGGSCCCCBHHHHSBC--SC
T ss_pred cHHHhccCCC--EEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHhhhcccccccHHHhhcC--CC
Confidence 4566888888 899999999999999998 76 999987 89999999999986322 235689999998 99
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++...
T Consensus 167 ~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 167 QTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred eEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence 99999999999999999999999999998 99999999999988754
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-13 Score=130.71 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=98.0
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----------ccccccccccc
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----------DNKVKIFDYMR 171 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----------~~~~~v~~im~ 171 (505)
++|..++ +++++++++.++++.|.+ ++ +||+|+ +|+++|+||.+|+.... ....++.++|+
T Consensus 160 ~~m~~~~--~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~ 234 (296)
T 3ddj_A 160 VFMSTKV--QTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMV 234 (296)
T ss_dssp HHSBCSC--CCEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSB
T ss_pred HhhcCCC--eEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhC
Confidence 3566677 899999999999999998 76 999998 89999999999996221 13568999999
Q ss_pred cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 172 DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 172 ~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+ +++++.+++++.+++++|.+++++++||+|+ |+++|+||++||++...
T Consensus 235 ~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~ 284 (296)
T 3ddj_A 235 T--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH 284 (296)
T ss_dssp C--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred C--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHH
Confidence 8 9999999999999999999999999999997 99999999999999864
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-12 Score=127.29 Aligned_cols=171 Identities=17% Similarity=0.144 Sum_probs=120.8
Q ss_pred CccHHHHHHHHHHcCcc---EEEEeCCCC----------CchhHHHHHHHHHHhCCCceEEEccc--CCHHH----HHHH
Q 010640 246 RESDKERLEHLVKAGVN---VVVLDSSQG----------NSSFQIEMIKYAKKTYPELDVIGGNV--VTMYQ----AQNL 306 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad---~I~i~~~~g----------~~~~~~~~i~~l~~~~~~~~Vi~g~V--~t~e~----a~~l 306 (505)
.+++.+.++.+.++|+| +++++.++. ......+.++++++.. +.||++|-. .+.++ ++.+
T Consensus 105 ~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~-~~Pv~vK~~~~~~~~~~~~~a~~~ 183 (314)
T 2e6f_A 105 VEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAY-GLPFGVKMPPYFDIAHFDTAAAVL 183 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHH-CSCEEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHHHHH
Confidence 35577778888888999 999987532 2234577888888876 788888633 25555 7888
Q ss_pred HHcC-CCEEEEccCCcc---eee--c-------cccccc-CcC-hHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHH
Q 010640 307 IEAG-VDGLRVGMGSGS---ICT--T-------QEVCAV-GRG-QATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 307 ~~aG-ad~I~v~~g~g~---~~~--~-------~~~~g~-g~p-~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal 370 (505)
.++| +|+|.+.+..+. +.. . ....|+ |.+ ...++..+.+..+.. ++|||+.|||.++.|+.+++
T Consensus 184 ~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l 263 (314)
T 2e6f_A 184 NEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHI 263 (314)
T ss_dssp HTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHH
T ss_pred HhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHH
Confidence 8999 999998754321 110 0 011111 111 112334444444455 79999999999999999999
Q ss_pred HhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHH
Q 010640 371 VLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPY 450 (505)
Q Consensus 371 ~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (505)
++|||+|++|+.|+. +| + .++++
T Consensus 264 ~~GAd~V~ig~~~l~----------------------------------------------~~---------p--~~~~~ 286 (314)
T 2e6f_A 264 LAGASMVQVGTALQE----------------------------------------------EG---------P--GIFTR 286 (314)
T ss_dssp HHTCSSEEECHHHHH----------------------------------------------HC---------T--THHHH
T ss_pred HcCCCEEEEchhhHh----------------------------------------------cC---------c--HHHHH
Confidence 999999999998852 01 1 46678
Q ss_pred HHHHHHHHhhccCCCCHHHHHHhh
Q 010640 451 TMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 451 l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+.++|+..|...|+++++||+.++
T Consensus 287 i~~~l~~~~~~~g~~~i~~~~g~~ 310 (314)
T 2e6f_A 287 LEDELLEIMARKGYRTLEEFRGRV 310 (314)
T ss_dssp HHHHHHHHHHHHTCCSSTTTTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHhchH
Confidence 999999999999999999998763
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8.2e-12 Score=121.86 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=112.6
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-------------------cccc
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-------------------DNKV 164 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-------------------~~~~ 164 (505)
+|..++ +++++++|+.+|+++|.+ ++ +||+|++ +++++|++|.+|+.... ..+.
T Consensus 9 i~~~~~--~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~--~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (280)
T 3kh5_A 9 AQNKKI--VTVYPTTTIRKALMTMNENKYRRLPVVNAG--NNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAAINE 84 (280)
T ss_dssp SCCSCC--CCBCTTSBHHHHHHHHHHHCCCEEEEECTT--TCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHHTTS
T ss_pred hcCCCc--EEECCCCcHHHHHHHHHhCCCcEeeEEECC--CCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHHhhh
Confidence 555667 899999999999999999 77 9999852 58999999999986211 1145
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCC-CccCC-CCcceEEE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGK-GTVGP-DGKWMVGA 241 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~-~~~d~-~~~l~v~a 241 (505)
++.++|++ +++++++++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++......... ...+. .... +
T Consensus 85 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~-~-- 159 (280)
T 3kh5_A 85 PVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITRDV-I-- 159 (280)
T ss_dssp BGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBCSC-C--
T ss_pred hHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCCCC-e--
Confidence 89999998 9999999999999999999999999999998 99999999999998754221100 01110 0000 0
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEe
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
.+.......+.++.+.+.+...+.+.
T Consensus 160 ~v~~~~~l~~~~~~~~~~~~~~~~Vv 185 (280)
T 3kh5_A 160 VATPGERLKDVARTMVRNGFRRLPVV 185 (280)
T ss_dssp CBCTTCBHHHHHHHHHHHTCSEEEEE
T ss_pred EECCCCcHHHHHHHHHHcCCCEEEEE
Confidence 11222345666677777777766554
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.5e-12 Score=126.31 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=97.4
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc------cccccccccccccC----
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL------SDNKVKIFDYMRDC---- 173 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~------~~~~~~v~~im~~~---- 173 (505)
+|..++ +++++++++.++++.|.+ ++ +||+|+ +|+++|+||.+|+... .....++.++|++.
T Consensus 190 ~m~~~~--~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~ 264 (334)
T 2qrd_G 190 GTWSNL--ATASMETKVYDVIKMLAEKNISAVPIVNS---EGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANF 264 (334)
T ss_dssp SBCSSC--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCTTC
T ss_pred cccCCc--eEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcccccC
Confidence 466677 899999999999999988 66 999997 8999999999999631 12356899999831
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.+++++.+++++.+++++|.+++++++||+|+ |+++|+||++||++....
T Consensus 265 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~ 315 (334)
T 2qrd_G 265 DGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY 315 (334)
T ss_dssp CCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHh
Confidence 27899999999999999999999999999998 999999999999998754
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=120.46 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=97.8
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
++|..++ +++++++|+.+|+++|.+ ++ +||+|+ +|+++|++|.+|+.... .+.++.++|.+ ++++++++
T Consensus 5 ~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~pV~d~---~~~~~Giv~~~dl~~~~-~~~~v~~~m~~--~~~~v~~~ 76 (282)
T 2yzq_A 5 TIMTQNP--VTITLPATRNYALELFKKYKVRSFPVVNK---EGKLVGIISVKRILVNP-DEEQLAMLVKR--DVPVVKEN 76 (282)
T ss_dssp HHSEESC--CCEESSCC------------CCEEEEECT---TCCEEEEEESSCC-----------CCCBS--CCCEEETT
T ss_pred HhccCCC--eEECCCCcHHHHHHHHHHcCCCeEEEEcC---CCcEEEEEEHHHHHhhh-ccCCHHHHcCC--CCcEECCC
Confidence 4566677 899999999999999998 76 999997 89999999999996322 35679999998 89999999
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh-hhcCCCC--CCCccCC-CCcceEEEeecCCccHHHHHHHHH
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER-LKGYPNL--GKGTVGP-DGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~-~~~~~~~--~~~~~d~-~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+++.++++.|.+++.+.+||+|+ |+++|+||.+|+++ ....... .....+. .... + .+.......+.++.+.
T Consensus 77 ~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m~~~~-~--~v~~~~~l~~~~~~~~ 153 (282)
T 2yzq_A 77 DTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYYQRYV-S--IVWEGTPLKAALKALL 153 (282)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTSBSCC-C--CEETTSBHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHhCCCC-E--EECCCCCHHHHHHHHH
Confidence 99999999999999999999998 99999999999998 5542100 0001110 0111 1 1112234566777777
Q ss_pred HcCccEEEEe
Q 010640 258 KAGVNVVVLD 267 (505)
Q Consensus 258 eaGad~I~i~ 267 (505)
+.+...+.+.
T Consensus 154 ~~~~~~l~Vv 163 (282)
T 2yzq_A 154 LSNSMALPVV 163 (282)
T ss_dssp TCSSSEEEEE
T ss_pred HcCCcEEEEE
Confidence 7788776554
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-12 Score=135.21 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=98.1
Q ss_pred ccCCccccCCCeeEeCCC-CCHHHHHHHhcC-Ce--EEEEe-CCCCCCeEEEEEeccccccc-----ccccccccccccc
Q 010640 103 SRRVPIFSSSLDVFKAPD-GCINDANDFDGS-NY--VFVTE-SGTRRSRILGYVTKSDWENL-----SDNKVKIFDYMRD 172 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~-~tv~~a~~~~~~-~~--~pVvd-~~~~~g~lvGivt~~Dl~~~-----~~~~~~v~~im~~ 172 (505)
++.++|..++ ++++++ +|+.+++++|.+ ++ +||+| + +++++|+||.+||+.. .....++.++|++
T Consensus 385 ~V~diM~~~~--vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~---~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~ 459 (527)
T 3pc3_A 385 AIAELELPAP--PVILKSDATVGEAIALMKKHRVDQLPVVDQD---DGSVLGVVGQETLITQIVSMNRQQSDPAIKALNK 459 (527)
T ss_dssp BGGGGCCCCC--SCCEETTCBHHHHHHHHHHHTCSEEEEECTT---TCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEET
T ss_pred cHHHhCcCCC--eEEcCCCCcHHHHHHHHHHcCCCeEEEEECC---CCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcC
Confidence 3456888888 999999 999999999999 77 99999 6 8999999999999621 1346789999998
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-----CeeeeEEeechhhhhhcC
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-----GERLDVVTREDVERLKGY 223 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-----g~l~GiIt~~dil~~~~~ 223 (505)
+++++++++++.+++++|.++++ +||||+ |+++||||++||++.+..
T Consensus 460 --~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~ 511 (527)
T 3pc3_A 460 --RVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAA 511 (527)
T ss_dssp --TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHT
T ss_pred --CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHh
Confidence 99999999999999999987765 799987 899999999999998864
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-10 Score=132.72 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=118.3
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC--------------chhHHHHHHHHHHhCCCceEEEcccC---C-HHHHHHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN--------------SSFQIEMIKYAKKTYPELDVIGGNVV---T-MYQAQNLI 307 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~--------------~~~~~~~i~~l~~~~~~~~Vi~g~V~---t-~e~a~~l~ 307 (505)
.+++.+.++.+.++|+|+|.++.+..+ ...+.+.++++++.. ++||++|-.. + .+.++.+.
T Consensus 647 ~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~-~~Pv~vK~~~~~~~~~~~a~~~~ 725 (1025)
T 1gte_A 647 KNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV-QIPFFAKLTPNVTDIVSIARAAK 725 (1025)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhh-CCceEEEeCCChHHHHHHHHHHH
Confidence 345667777777899999999865321 234677888888887 7899986443 2 45689999
Q ss_pred HcCCCEEEEccCCcce-----------e---ec-ccccccCcChH--HHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHH
Q 010640 308 EAGVDGLRVGMGSGSI-----------C---TT-QEVCAVGRGQA--TAVYKVSSIAAQS-GVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 308 ~aGad~I~v~~g~g~~-----------~---~~-~~~~g~g~p~~--~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~ka 369 (505)
++|+|+|.+.+...+. . .. ....++..+.. .++..+.+..+.. ++|||++|||.++.|+.++
T Consensus 726 ~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~ 805 (1025)
T 1gte_A 726 EGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQF 805 (1025)
T ss_dssp HHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHH
T ss_pred HcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHH
Confidence 9999999996421100 0 00 01111111211 1233344444445 6999999999999999999
Q ss_pred HHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHH
Q 010640 370 LVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIP 449 (505)
Q Consensus 370 l~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 449 (505)
|++||++|++|++|+. + + ..+++
T Consensus 806 l~~Ga~~v~vg~~~l~-------------------~---------------------------~-----------~~~~~ 828 (1025)
T 1gte_A 806 LHSGASVLQVCSAVQN-------------------Q---------------------------D-----------FTVIQ 828 (1025)
T ss_dssp HHTTCSEEEESHHHHT-------------------S---------------------------C-----------TTHHH
T ss_pred HHcCCCEEEEeecccc-------------------C---------------------------C-----------ccHHH
Confidence 9999999999998852 0 0 14566
Q ss_pred HHHHHHHHHhhccCCCCHHHHHH
Q 010640 450 YTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 450 ~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
.+..+|+..|...|++++.+|+.
T Consensus 829 ~~~~~l~~~l~~~G~~~i~~l~g 851 (1025)
T 1gte_A 829 DYCTGLKALLYLKSIEELQGWDG 851 (1025)
T ss_dssp HHHHHHHHHHHHTTCGGGTTSBT
T ss_pred HHHHHHHHHHHHcCCCCHHHHhC
Confidence 89999999999999999999875
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=122.12 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=94.4
Q ss_pred cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccc------cccccccccc------cCC
Q 010640 110 SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSD------NKVKIFDYMR------DCS 174 (505)
Q Consensus 110 ~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~------~~~~v~~im~------~~~ 174 (505)
.++ +++++++++.++++.|.+ ++ +||+|+ +|+++|+||.+|+..... ...++.++|. +
T Consensus 201 ~~~--~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 273 (330)
T 2v8q_E 201 ANI--AMVRTTTPVYVALGIFVQHRVSALPVVDE---KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE-- 273 (330)
T ss_dssp SSC--CCEETTCBHHHHHHHHHHHCCSEEEEECT---TSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--
T ss_pred CCc--eEECCCCCHHHHHHHHHHcCCCeEEEECC---CCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccccccC--
Confidence 456 889999999999999988 76 999997 899999999999973221 2467888884 5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+++++.+++++.+++++|.+++++++||+|+ |+++|+||++||++....
T Consensus 274 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~ 323 (330)
T 2v8q_E 274 GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL 323 (330)
T ss_dssp SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred CCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHh
Confidence 8999999999999999999999999999998 999999999999998754
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=120.17 Aligned_cols=117 Identities=14% Similarity=0.019 Sum_probs=95.9
Q ss_pred HhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCe-----EEEEEeccccccc--------ccc
Q 010640 99 VSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSR-----ILGYVTKSDWENL--------SDN 162 (505)
Q Consensus 99 ~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~-----lvGivt~~Dl~~~--------~~~ 162 (505)
..+.+..+.|..++ +++++++++.++++.|.+ ++ +||+|+ +++ ++|+||.+|+... ...
T Consensus 111 ~~i~~~~~~~~~~~--v~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~ 185 (323)
T 3t4n_C 111 KDIERALGVDQLDT--ASIHPSRPLFEACLKMLESRSGRIPLIDQ---DEETHREIVVSVLTQYRILKFVALNCRETHFL 185 (323)
T ss_dssp HHHHHHTTC----C--CCBCTTSBHHHHHHHHHHHTCSEEEEEEE---CTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHHhCCCCCCc--eEeCCCCcHHHHHHHHHhCCeeEEEEEec---CCCCCccceEEEecHHHHHHHHHhcCCchhhh
Confidence 33444445566677 899999999999999988 76 999997 553 9999999999621 123
Q ss_pred ccccccc---cccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDY---MRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~i---m~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
..++.++ |++ +++++.+++++.++++.|.+++++.+||+|+ |+++|+||.+|+++...
T Consensus 186 ~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~ 247 (323)
T 3t4n_C 186 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK 247 (323)
T ss_dssp CSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHH
T ss_pred hCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHh
Confidence 4588999 887 9999999999999999999999999999998 99999999999998764
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=117.27 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=111.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc---------hhHHHHHHHHHHhC-------------------CCce-EEEcccC-
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS---------SFQIEMIKYAKKTY-------------------PELD-VIGGNVV- 298 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~---------~~~~~~i~~l~~~~-------------------~~~~-Vi~g~V~- 298 (505)
+.+.++.+.+ -+|+++++.++.+. ....+.++.+++.. ...| |++|--.
T Consensus 201 y~~~a~~l~~-~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd 279 (415)
T 3i65_A 201 LKYCINKIGR-YADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPD 279 (415)
T ss_dssp HHHHHHHHGG-GCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSC
T ss_pred HHHHHHHHHh-hCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCC
Confidence 3344444433 49999999876442 23445556665531 2578 7786332
Q ss_pred -C----HHHHHHHHHcCCCEEEEccCCcc-eee---cccccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHH
Q 010640 299 -T----MYQAQNLIEAGVDGLRVGMGSGS-ICT---TQEVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGH 365 (505)
Q Consensus 299 -t----~e~a~~l~~aGad~I~v~~g~g~-~~~---~~~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~d 365 (505)
+ .+.|+.+.++|+|+|.+.+.... ... .....|...+. ..++..+++..+.. ++|||++|||.++.|
T Consensus 280 ~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eD 359 (415)
T 3i65_A 280 LNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLD 359 (415)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHH
Confidence 2 44678889999999999764321 000 00112221121 22344444444444 699999999999999
Q ss_pred HHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchh
Q 010640 366 IVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVL 445 (505)
Q Consensus 366 i~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 445 (505)
+.+++.+|||+||+||.|+. +| +
T Consensus 360 a~e~l~aGAd~VqIgra~l~----------------------------------------------~G---------P-- 382 (415)
T 3i65_A 360 ALEKIEAGASVCQLYSCLVF----------------------------------------------NG---------M-- 382 (415)
T ss_dssp HHHHHHHTEEEEEESHHHHH----------------------------------------------HG---------G--
T ss_pred HHHHHHcCCCEEEEcHHHHh----------------------------------------------cC---------H--
Confidence 99999999999999998741 11 1
Q ss_pred hHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 446 KFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 446 ~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.++.++..+|+..|...|+++++|++..
T Consensus 383 ~~~~~i~~~L~~~l~~~G~~si~e~~G~ 410 (415)
T 3i65_A 383 KSAVQIKRELNHLLYQRGYYNLKEAIGR 410 (415)
T ss_dssp GHHHHHHHHHHHHHHHTTCSSSTTTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHhCh
Confidence 4667899999999999999999999865
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-10 Score=114.66 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=106.0
Q ss_pred cCccEEEEeCCCCCc---------hhHHHHHHHHHHh---C---CCceEEEcccC--C----HHHHHHHHHcCCCEEEEc
Q 010640 259 AGVNVVVLDSSQGNS---------SFQIEMIKYAKKT---Y---PELDVIGGNVV--T----MYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 259 aGad~I~i~~~~g~~---------~~~~~~i~~l~~~---~---~~~~Vi~g~V~--t----~e~a~~l~~aGad~I~v~ 317 (505)
..+|++.++.++.+. ..+.+.++.+++. . .++||++|--. + .+.|+.+.++|+|+|.+.
T Consensus 175 ~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ 254 (367)
T 3zwt_A 175 PLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVT 254 (367)
T ss_dssp GGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred hhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 458999999876542 2233455555442 1 26899887332 2 345788899999999986
Q ss_pred cCC-cceeec-----ccccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCC
Q 010640 318 MGS-GSICTT-----QEVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGST 387 (505)
Q Consensus 318 ~g~-g~~~~~-----~~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~ 387 (505)
+.. +..... ....|...+. ..++..+++..+.. ++|||+.|||.++.|+.+++.+|||+||+|+.|+.
T Consensus 255 ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~-- 332 (367)
T 3zwt_A 255 NTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF-- 332 (367)
T ss_dssp CCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH--
T ss_pred CCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHh--
Confidence 432 110000 0111221121 12334444444445 69999999999999999999999999999998741
Q ss_pred CCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCH
Q 010640 388 EAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSL 467 (505)
Q Consensus 388 Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~ 467 (505)
+| + .++.++..+|+..|...|++++
T Consensus 333 --------------------------------------------~g---------P--~~~~~i~~~l~~~m~~~G~~~i 357 (367)
T 3zwt_A 333 --------------------------------------------WG---------P--PVVGKVKRELEALLKEQGFGGV 357 (367)
T ss_dssp --------------------------------------------HC---------T--HHHHHHHHHHHHHHHHTTCSSH
T ss_pred --------------------------------------------cC---------c--HHHHHHHHHHHHHHHHcCCCCH
Confidence 01 1 4567899999999999999999
Q ss_pred HHHHHh
Q 010640 468 QSAHDL 473 (505)
Q Consensus 468 ~~l~~~ 473 (505)
.|++.+
T Consensus 358 ~e~~G~ 363 (367)
T 3zwt_A 358 TDAIGA 363 (367)
T ss_dssp HHHTTG
T ss_pred HHhhCc
Confidence 999865
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.8e-10 Score=118.05 Aligned_cols=128 Identities=19% Similarity=0.176 Sum_probs=88.9
Q ss_pred Cce-EEEcccC--CHH----HHHHHHHcCCCEEEEccCCcce-ee---cccccccCcChH--HHHHHHHHHHhhc--CCc
Q 010640 289 ELD-VIGGNVV--TMY----QAQNLIEAGVDGLRVGMGSGSI-CT---TQEVCAVGRGQA--TAVYKVSSIAAQS--GVP 353 (505)
Q Consensus 289 ~~~-Vi~g~V~--t~e----~a~~l~~aGad~I~v~~g~g~~-~~---~~~~~g~g~p~~--~~l~~v~~~~~~~--~ip 353 (505)
+.| |++|--. +.+ .|+.+.++|+|+|.+.++...- .. .....|+..+.+ .++..+++..+.. ++|
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP 375 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 375 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence 567 7776332 333 3888999999999998643210 00 001122211211 1334444444445 799
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQG 433 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g 433 (505)
||+.|||.++.|+.+++.+|||+||+||.|+. +|
T Consensus 376 VIg~GGI~s~~DA~e~l~aGAd~Vqigrall~----------------------------------------------~g 409 (443)
T 1tv5_A 376 IIASGGIFSGLDALEKIEAGASVCQLYSCLVF----------------------------------------------NG 409 (443)
T ss_dssp EEEESSCCSHHHHHHHHHTTEEEEEESHHHHH----------------------------------------------HG
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh----------------------------------------------cC
Confidence 99999999999999999999999999999851 01
Q ss_pred eeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 434 VVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+ .++..+..+|+..|...|+++++|++..
T Consensus 410 ---------P--~l~~~i~~~l~~~l~~~G~~si~e~~G~ 438 (443)
T 1tv5_A 410 ---------M--KSAVQIKRELNHLLYQRGYYNLKEAIGR 438 (443)
T ss_dssp ---------G--GHHHHHHHHHHHHHHHHTCSSSGGGTTT
T ss_pred ---------h--HHHHHHHHHHHHHHHHhCCCCHHHHhhh
Confidence 1 4667888999999999999999999865
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.1e-10 Score=115.78 Aligned_cols=171 Identities=16% Similarity=0.124 Sum_probs=115.6
Q ss_pred CccHHHHHHHHH---HcCccEEEEeCCCCC----------chhHHHHHHHHHHhCCCceEEEcccC--CHHH----HHHH
Q 010640 246 RESDKERLEHLV---KAGVNVVVLDSSQGN----------SSFQIEMIKYAKKTYPELDVIGGNVV--TMYQ----AQNL 306 (505)
Q Consensus 246 ~~~~~e~~~~li---eaGad~I~i~~~~g~----------~~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~----a~~l 306 (505)
.+++.+.++.+. +.|+|++.++.++.+ .....+.++.+++.. ++||.+|--. +.++ +..+
T Consensus 138 ~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~-~~PV~vKi~p~~d~~~~~~~a~~~ 216 (354)
T 4ef8_A 138 MRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-PHSFGVKMPPYFDFAHFDAAAEIL 216 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHC-CSCEEEEECCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhh-CCCeEEEecCCCCHHHHHHHHHHH
Confidence 445666666666 568999999886532 244567778888876 7899887332 3322 3344
Q ss_pred HHcC-CCEEEEccCCcc---ee--e-------cccccccCcCh--HHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHH
Q 010640 307 IEAG-VDGLRVGMGSGS---IC--T-------TQEVCAVGRGQ--ATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 307 ~~aG-ad~I~v~~g~g~---~~--~-------~~~~~g~g~p~--~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal 370 (505)
.++| +|+|.+.+.-+. +. . .....|...+. ..++..+.+..+.. ++|||+.|||.++.|+.+++
T Consensus 217 ~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l 296 (354)
T 4ef8_A 217 NEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHV 296 (354)
T ss_dssp HTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHH
T ss_pred HhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHH
Confidence 4787 999987543210 00 0 01122222222 12344444444444 69999999999999999999
Q ss_pred HhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHH
Q 010640 371 VLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPY 450 (505)
Q Consensus 371 ~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 450 (505)
.+||++||+|+.++. +| + .++.+
T Consensus 297 ~aGAd~V~vgra~l~----------------------------------------------~G---------P--~~~~~ 319 (354)
T 4ef8_A 297 LAGASMVQVGTALQE----------------------------------------------EG---------P--SIFER 319 (354)
T ss_dssp HHTEEEEEECHHHHH----------------------------------------------HC---------T--THHHH
T ss_pred HcCCCEEEEhHHHHH----------------------------------------------hC---------H--HHHHH
Confidence 999999999998741 11 1 46678
Q ss_pred HHHHHHHHhhccCCCCHHHHHHhh
Q 010640 451 TMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 451 l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+.++|+..|...|+++++||+.++
T Consensus 320 i~~~l~~~m~~~G~~si~el~G~~ 343 (354)
T 4ef8_A 320 LTSELLGVMAKKRYQTLDEFRGKV 343 (354)
T ss_dssp HHHHHHHHHHHHTCCSGGGTTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999998774
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.5e-10 Score=106.86 Aligned_cols=125 Identities=17% Similarity=0.206 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.++.+.++|+|++.++.+.. .+....++++.+++. ++++++ ++.+.++++.+.++|+|+|.+.+.+-.. .+.
T Consensus 90 ~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~--g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t~-~~~ 165 (229)
T 3q58_A 90 YLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLH--GLLAMA-DCSTVNEGISCHQKGIEFIGTTLSGYTG-PIT 165 (229)
T ss_dssp SHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT--TCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSSS-SCC
T ss_pred cHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHC--CCEEEE-ecCCHHHHHHHHhCCCCEEEecCccCCC-CCc
Confidence 34567788999999999987753 345567788888776 677776 7899999999999999999654321100 000
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...|.+..+.++.+ . ++|||+.|||.++.|+.+++.+||++|++|+.|..
T Consensus 166 ----~~~~~~~li~~l~~---~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~ 215 (229)
T 3q58_A 166 ----PVEPDLAMVTQLSH---A-GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR 215 (229)
T ss_dssp ----CSSCCHHHHHHHHT---T-TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred ----CCCCCHHHHHHHHH---c-CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence 12355665655443 3 79999999999999999999999999999999863
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=114.59 Aligned_cols=171 Identities=15% Similarity=0.133 Sum_probs=114.0
Q ss_pred CCccHHHHHHHHHHcCcc-EEEEeCCCCC----------chhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcC
Q 010640 245 TRESDKERLEHLVKAGVN-VVVLDSSQGN----------SSFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAG 310 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad-~I~i~~~~g~----------~~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aG 310 (505)
..+++.+.++.+.+.+++ ++.++.++.+ .+.+.+.++.+++.. ++||.+|-- ...+.++.+..+|
T Consensus 139 ~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~-~~PV~vKi~p~~~~~~~a~~~~~ag 217 (345)
T 3oix_A 139 SPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYF-TKPLGIKLPPYFDIVHFDQAAAIFN 217 (345)
T ss_dssp SHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHhC
Confidence 345566677777777876 9999876532 134556666666665 789988622 2355667777888
Q ss_pred CCEEEEc---cCCc---ceee-------cccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhC
Q 010640 311 VDGLRVG---MGSG---SICT-------TQEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLG 373 (505)
Q Consensus 311 ad~I~v~---~g~g---~~~~-------~~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lG 373 (505)
+++|..- +.-| .+.. .....|...|.+ .++..+.+..+.. ++|||+.|||.++.|+.+++.+|
T Consensus 218 a~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aG 297 (345)
T 3oix_A 218 XYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCG 297 (345)
T ss_dssp TSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHT
T ss_pred CCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhC
Confidence 8766421 1000 0110 011122221222 2344555555555 69999999999999999999999
Q ss_pred CCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHH
Q 010640 374 ASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQ 453 (505)
Q Consensus 374 A~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 453 (505)
||+||+||.|+. +| + .++.++..
T Consensus 298 Ad~V~igra~~~----------------------------------------------~g---------P--~~~~~i~~ 320 (345)
T 3oix_A 298 ASMVQIGTALHQ----------------------------------------------EG---------P--QIFKRITK 320 (345)
T ss_dssp CSEEEESHHHHH----------------------------------------------HC---------T--HHHHHHHH
T ss_pred CCEEEEChHHHh----------------------------------------------cC---------h--HHHHHHHH
Confidence 999999998641 01 1 46678999
Q ss_pred HHHHHhhccCCCCHHHHHHh
Q 010640 454 AVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 454 ~l~~~m~~~G~~~~~~l~~~ 473 (505)
+|+..|...|+++++|++.+
T Consensus 321 ~L~~~l~~~G~~si~e~~G~ 340 (345)
T 3oix_A 321 ELXAIMTEKGYETLEDFRGK 340 (345)
T ss_dssp HHHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHHcCCCCHHHHHhH
Confidence 99999999999999999865
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.9e-10 Score=104.77 Aligned_cols=124 Identities=16% Similarity=0.217 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.++.+.++|+|++.++.+.. .+....++++.+++. ++++++ ++.+.++++.+.++|+|+|.+.+.+-. ..++
T Consensus 90 ~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~--g~~v~~-~v~t~eea~~a~~~Gad~Ig~~~~g~t-~~~~ 165 (232)
T 3igs_A 90 FLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHH--HLLTMA-DCSSVDDGLACQRLGADIIGTTMSGYT-TPDT 165 (232)
T ss_dssp SHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHT--TCEEEE-ECCSHHHHHHHHHTTCSEEECTTTTSS-SSSC
T ss_pred cHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHC--CCEEEE-eCCCHHHHHHHHhCCCCEEEEcCccCC-CCCC
Confidence 34567788999999999987653 344567788888776 677766 789999999999999999965432100 0001
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
...|.+..+.++++ . ++|||+.|||.++.|+.+++.+||++|++|+.|.
T Consensus 166 ----~~~~~~~~i~~l~~---~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~ 214 (232)
T 3igs_A 166 ----PEEPDLPLVKALHD---A-GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAIT 214 (232)
T ss_dssp ----CSSCCHHHHHHHHH---T-TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred ----CCCCCHHHHHHHHh---c-CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhc
Confidence 12355666655544 3 7999999999999999999999999999999985
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=113.68 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=93.0
Q ss_pred CCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-c----------cccccccc-
Q 010640 105 RVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-D----------NKVKIFDY- 169 (505)
Q Consensus 105 ~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-~----------~~~~v~~i- 169 (505)
.++|..++ +++++++++.++++.|.+ ++ +||+|++ +|+++|+||.+|+.... . ...++.++
T Consensus 121 ~~im~~~~--~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~ 196 (330)
T 2v8q_E 121 LQDSFKPL--VCISPNASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQ 196 (330)
T ss_dssp SSSSCCCC--CCBCTTSBHHHHHHHHHHHTCSCEEEECTT--TCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHT
T ss_pred hhcccCCc--eEeCCCCCHHHHHHHHHHCCCCeEEEEeCC--CCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhc
Confidence 35667777 899999999999999988 66 9999842 48999999999986211 0 12345554
Q ss_pred -cc-cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 170 -MR-DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 170 -m~-~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
|+ + +++++.+++++.++++.|.+++++.+||+|+ |+++|+||.+|+++...
T Consensus 197 v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~ 250 (330)
T 2v8q_E 197 IGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 250 (330)
T ss_dssp CSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGG
T ss_pred ccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHh
Confidence 54 5 8899999999999999999999999999997 99999999999998765
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-09 Score=111.45 Aligned_cols=196 Identities=14% Similarity=0.141 Sum_probs=128.6
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEee--C-CeeeeEEeechhhhhhcCCCCCCCccCCCCc-ceEE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEK--D-GERLDVVTREDVERLKGYPNLGKGTVGPDGK-WMVG 240 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd--~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~-l~v~ 240 (505)
.+.++|++ +++++.+++++.+++++|.+++...+||+| + ++++|+||.+|++........ ..+.-.+ -.+
T Consensus 91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~~~~~---v~~im~~~~~~- 164 (491)
T 1zfj_A 91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAP---ISEHMTSEHLV- 164 (491)
T ss_dssp HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSB---TTTSCCCSCCC-
T ss_pred hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhccCCCc---HHHHcCCCCCE-
Confidence 35789998 999999999999999999999999999999 7 999999999999874221110 1111000 011
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCCCc---hhHHHHHHHHHHhC--C--CceEEEcc-c----CCHHHHHHHHH
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNS---SFQIEMIKYAKKTY--P--ELDVIGGN-V----VTMYQAQNLIE 308 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~---~~~~~~i~~l~~~~--~--~~~Vi~g~-V----~t~e~a~~l~~ 308 (505)
.+.......+.++.+.+.+...+.+....|.. ....+.++.+.+.. . ...+.++. + .+.+.++++.+
T Consensus 165 -~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~ 243 (491)
T 1zfj_A 165 -TAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFE 243 (491)
T ss_dssp -CEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHH
T ss_pred -EECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHH
Confidence 11123346778888888888877664444321 12334444444211 0 11122221 1 24789999999
Q ss_pred cCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 309 AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 309 aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
+|+|++.++...| +.......+..+ +... ++|++ .||+.+..++.+++.+||++|.+|.
T Consensus 244 ~G~d~ivi~~a~g----------~~~~~~~~i~~l---~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg~ 303 (491)
T 1zfj_A 244 AGADAIVIDTAHG----------HSAGVLRKIAEI---RAHFPNRTLI-AGNIATAEGARALYDAGVDVVKVGI 303 (491)
T ss_dssp HTCSEEEECCSCT----------TCHHHHHHHHHH---HHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred cCCCeEEEeeecC----------cchhHHHHHHHH---HHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEEECc
Confidence 9999998863211 111123333333 3344 69999 7999999999999999999999883
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.1e-09 Score=99.20 Aligned_cols=130 Identities=16% Similarity=0.304 Sum_probs=94.1
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC-c-hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN-S-SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~-~-~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
.+.++.+.++|++.+.++..... + ....+.++.+++.+|+.++++ ++.+.+++..+.++|+|+|.++.++.. ...+
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~-~~~t~~e~~~~~~~G~d~i~~~~~g~t-~~~~ 155 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA-DIATVEEAKNAARLGFDYIGTTLHGYT-SYTQ 155 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSS-TTST
T ss_pred HHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEe-cCCCHHHHHHHHHcCCCEEEeCCCcCc-CCCC
Confidence 46677788999999999775422 1 245688888999887777766 778999999999999999977533211 0001
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
... ...+.+..+. +..+..++||+++|||.++.|+.+++++||++|++|+.|..
T Consensus 156 ~~~-~~~~~~~~~~---~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~ 209 (223)
T 1y0e_A 156 GQL-LYQNDFQFLK---DVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (223)
T ss_dssp TCC-TTHHHHHHHH---HHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred CCC-CCcccHHHHH---HHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence 000 0123333443 44444679999999999999999999999999999998753
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-09 Score=107.22 Aligned_cols=135 Identities=16% Similarity=0.165 Sum_probs=87.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc---------hhHHHHHHHHHHhC--------CCceEEEcccC--C----HHHHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS---------SFQIEMIKYAKKTY--------PELDVIGGNVV--T----MYQAQN 305 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~---------~~~~~~i~~l~~~~--------~~~~Vi~g~V~--t----~e~a~~ 305 (505)
+.+.++.+. .|+|++.++.++.+. ....+.++++++.. ++.||+++-.. + .+.++.
T Consensus 155 ~~~aa~~~~-~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~ 233 (336)
T 1f76_A 155 YLICMEKIY-AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADS 233 (336)
T ss_dssp HHHHHHHHG-GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHh-ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHH
Confidence 333444443 489999998754332 23456777777764 26899987433 2 344788
Q ss_pred HHHcCCCEEEEccCCcceeec------cccccc-CcC-hHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 306 LIEAGVDGLRVGMGSGSICTT------QEVCAV-GRG-QATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 306 l~~aGad~I~v~~g~g~~~~~------~~~~g~-g~p-~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
+.++|+|+|.++++..+.... ....|+ |.+ ...++..+.+..+.. ++|||++|||.++.|+.+++++|||
T Consensus 234 l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd 313 (336)
T 1f76_A 234 LVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGAS 313 (336)
T ss_dssp HHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCS
T ss_pred HHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCC
Confidence 999999999998543111000 011122 111 112233333333334 6999999999999999999999999
Q ss_pred EEEeccccc
Q 010640 376 TVMMGSFLA 384 (505)
Q Consensus 376 ~V~~G~~f~ 384 (505)
+|++|+.|+
T Consensus 314 ~V~igr~~l 322 (336)
T 1f76_A 314 LVQIYSGFI 322 (336)
T ss_dssp EEEESHHHH
T ss_pred EEEeeHHHH
Confidence 999999986
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=109.32 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=91.7
Q ss_pred cccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCC-e----EEEEEecccccccc--------cccccccc---
Q 010640 108 IFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRS-R----ILGYVTKSDWENLS--------DNKVKIFD--- 168 (505)
Q Consensus 108 ~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g-~----lvGivt~~Dl~~~~--------~~~~~v~~--- 168 (505)
|...+..++++++.++.++++.|.+ ++ +||+|+ ++ + ++|+||.+|+.... ....++.+
T Consensus 113 m~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~v~~l~~ 189 (334)
T 2qrd_G 113 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV---DGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTI 189 (334)
T ss_dssp TCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE---ETTTTEEEEEEEEEHHHHHHHHHHHCGGGGGCCCBGGGSSC
T ss_pred ccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC---CCCcCccceEEEeeHHHHHHHHHhhccchhhhhCcHHHhCC
Confidence 3334334789999999999999987 65 999986 44 4 99999999986211 12367888
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 169 YMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 169 im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+|++ +++++.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++...
T Consensus 190 ~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~ 242 (334)
T 2qrd_G 190 GTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ 242 (334)
T ss_dssp SBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHT
T ss_pred cccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhh
Confidence 4887 9999999999999999999999999999998 99999999999998754
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-08 Score=93.06 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=90.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
..++..+.++.+++.|++++.+..... ...+.++.+++.+|+..+.+|+|.+.++++.+.++|+++|....
T Consensus 44 ~~~~a~~~a~al~~gGi~~iEvt~~t~---~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~------ 114 (232)
T 4e38_A 44 NAEDIIPLGKVLAENGLPAAEITFRSD---AAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG------ 114 (232)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS------
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC------
Confidence 345688899999999999999976543 35688888999988888888999999999999999999994320
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. . .++.++++..++|+++ |+.|+.++.+|+.+|||.|.+
T Consensus 115 ~----------~----~~vi~~~~~~gi~~ip--Gv~TptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 115 F----------N----PNTVRACQEIGIDIVP--GVNNPSTVEAALEMGLTTLKF 153 (232)
T ss_dssp C----------C----HHHHHHHHHHTCEEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred C----------C----HHHHHHHHHcCCCEEc--CCCCHHHHHHHHHcCCCEEEE
Confidence 0 1 2344556667899999 899999999999999999976
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-09 Score=104.70 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=115.3
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEc---ccC---CHHHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGG---NVV---TMYQAQ 304 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g---~V~---t~e~a~ 304 (505)
++...+.++.+.++ +|.|.++..+.. .....+.++.+++.+ +.||.++ ++. +.+.++
T Consensus 70 ~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~-~~pv~vKir~G~~~~~~~~~a~ 147 (318)
T 1vhn_A 70 PNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRLGWEKNEVEEIYR 147 (318)
T ss_dssp HHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEESCSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhh-CCCEEEEecCCCChHHHHHHHH
Confidence 34466667777777 999999864321 234677888888887 5898887 443 237899
Q ss_pred HHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEEecccc
Q 010640 305 NLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVMMGSFL 383 (505)
Q Consensus 305 ~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~~f 383 (505)
.+.++|+|+|.+..+ .... ... +.+....+..+ ++ ++|||++|||.++.|+.++++ .|||+|++|+.|
T Consensus 148 ~l~~~G~d~i~v~g~--~~~~--~~~--~~~~~~~i~~i----~~-~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~ 216 (318)
T 1vhn_A 148 ILVEEGVDEVFIHTR--TVVQ--SFT--GRAEWKALSVL----EK-RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGA 216 (318)
T ss_dssp HHHHTTCCEEEEESS--CTTT--TTS--SCCCGGGGGGS----CC-SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGG
T ss_pred HHHHhCCCEEEEcCC--Cccc--cCC--CCcCHHHHHHH----Hc-CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHH
Confidence 999999999998521 1000 000 11222222222 22 799999999999999999999 799999999998
Q ss_pred cCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccC
Q 010640 384 AGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLG 463 (505)
Q Consensus 384 ~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G 463 (505)
+...+-..... .++. .| . ....++.+.++.+...++..|.+.|
T Consensus 217 l~~P~l~~~~~-------------------------~~~~--------~g-~---~~~~~~~~~~~~~~~~~~~~~~~~g 259 (318)
T 1vhn_A 217 IGRPWIFKQIK-------------------------DFLR--------SG-K---YSEPSREEILRTFERHLELLIKTKG 259 (318)
T ss_dssp TTCTTHHHHHH-------------------------HHHH--------HS-C---CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCcchHHHHH-------------------------HHHh--------CC-C---CCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 75332211100 0000 01 0 0123567888888888888888888
Q ss_pred CC-CHHHHHHh
Q 010640 464 AS-SLQSAHDL 473 (505)
Q Consensus 464 ~~-~~~~l~~~ 473 (505)
++ .+.++++.
T Consensus 260 ~~~~~~~~~~~ 270 (318)
T 1vhn_A 260 ERKAVVEMRKF 270 (318)
T ss_dssp HHHHHHHHHTT
T ss_pred chHHHHHHHHH
Confidence 64 56666654
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.6e-08 Score=107.37 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=125.8
Q ss_pred cccc-CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 107 PIFS-SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 107 ~~~~-~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+|.+ ++ ++++++.++.+++++|.+ ++ +||+|+ +|+++|+||.+|+.........+.+.+.+.--...+...
T Consensus 180 vM~~~~~--vtv~~~~~l~eal~~m~~~~i~~lpVVDe---~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~ 254 (511)
T 3usb_A 180 VMTKEQL--ITAPVGTTLSEAEKILQKYKIEKLPLVDN---NGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVT 254 (511)
T ss_dssp HCCCCCC--CCEETTCCHHHHHHHHHHHTCSEEEEECT---TSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSS
T ss_pred hcccCCC--EEECCCCCHHHHHHHHHHcCCCEEEEEeC---CCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeec
Confidence 5555 66 899999999999999998 76 999998 999999999999974333333445555541122234444
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
....+.++.+.+.+++.+.|-.. +...+++ ++++.... ......++...+. ..+.++.+.++|+
T Consensus 255 ~d~~era~aLveaGvd~I~Id~a~g~~~~v~---~~i~~i~~--------~~~~~~vi~g~v~----t~e~a~~~~~aGa 319 (511)
T 3usb_A 255 ADAMTRIDALVKASVDAIVLDTAHGHSQGVI---DKVKEVRA--------KYPSLNIIAGNVA----TAEATKALIEAGA 319 (511)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCTTSHHHH---HHHHHHHH--------HCTTSEEEEEEEC----SHHHHHHHHHHTC
T ss_pred cchHHHHHHHHhhccceEEecccccchhhhh---hHHHHHHH--------hCCCceEEeeeec----cHHHHHHHHHhCC
Confidence 45567778888899997766544 5444432 22322211 0111123333443 3467888999999
Q ss_pred cEEEEeCCCCC----------chhHHHHHHHHHHhC--CCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 262 NVVVLDSSQGN----------SSFQIEMIKYAKKTY--PELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 262 d~I~i~~~~g~----------~~~~~~~i~~l~~~~--~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|++.+....|. ....++.+..+.+.. .++|||+ |++.+.+++.+++.+|||++.++
T Consensus 320 d~i~vg~g~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 320 NVVKVGIGPGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp SEEEECSSCSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CEEEECCCCccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 99988432221 122344444443322 1689988 89999999999999999999987
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-08 Score=95.93 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-c--hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-S--SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-~--~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
..+.++.+.++|++.+.++..... + ....+.++.+++.+++.++++ ++.+.++++.+.++|+|+|.....+... .
T Consensus 90 ~~~~i~~~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~-~~~t~~ea~~a~~~Gad~i~~~v~g~~~-~ 167 (234)
T 1yxy_A 90 TMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA-DISTFDEGLVAHQAGIDFVGTTLSGYTP-Y 167 (234)
T ss_dssp SHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE-ECSSHHHHHHHHHTTCSEEECTTTTSST-T
T ss_pred hHHHHHHHHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE-eCCCHHHHHHHHHcCCCEEeeeccccCC-C
Confidence 457788899999999999775422 1 245678888998887777665 7889999999999999999211111100 0
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+... ..+.+..+.++. +. ++||+++|||.++.++.+++.+||++|++|+.|.
T Consensus 168 ~~~~---~~~~~~~i~~~~---~~-~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~ 219 (234)
T 1yxy_A 168 SRQE---AGPDVALIEALC---KA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 219 (234)
T ss_dssp SCCS---SSCCHHHHHHHH---HT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred CcCC---CCCCHHHHHHHH---hC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence 1111 123444454443 34 7999999999999999999999999999999875
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-09 Score=110.14 Aligned_cols=194 Identities=15% Similarity=0.109 Sum_probs=78.8
Q ss_pred cCCccccC--CCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceE
Q 010640 104 RRVPIFSS--SLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 104 ~~~~~~~~--p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~ 178 (505)
..++|..+ + +++++++++.+++++|.+ ++ +||+|+ +++++|+||.+|+...........+.+.+.-....
T Consensus 163 V~diM~~~~~~--~tv~~~~sl~ea~~~m~~~~i~~lpVVDe---~g~lvGiIT~~Dil~~~~~~~~~~d~~~~l~v~a~ 237 (503)
T 1me8_A 163 VSDMMTPFSKL--VTAHQDTKLSEANKIIWEKKLNALPIIDD---DQHLRYIVFRKDYDRSQVCHNELVDSQKRYLVGAG 237 (503)
T ss_dssp ----------------------------------------------------------------CCCCBCTTSCBCCEEE
T ss_pred HHHHhCCCCCC--EEEcCCCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEecHHHHhhhcccchhccccccccccc
Confidence 44577766 7 999999999999999999 76 999998 89999999999996332111112222221001123
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+.. ....+.++.|.+.+++.+.|-.+ +...|+++.-+.++... + +...++...+. ..+.++.++
T Consensus 238 v~~-~~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~-~---------~~~~Vi~G~V~----t~~~a~~l~ 302 (503)
T 1me8_A 238 INT-RDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKY-G---------DKVKVGAGNIV----DGEGFRYLA 302 (503)
T ss_dssp ECS-SSHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHH-G---------GGSCEEEEEEC----SHHHHHHHH
T ss_pred cCc-hhHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhC-C---------CCceEeecccc----CHHHHHHHH
Confidence 344 56667788888889987666333 66555443333333321 0 00112222332 346778899
Q ss_pred HcCccEEEEeCCCCC----------chhHHHHHHHHHHhCC--------CceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 258 KAGVNVVVLDSSQGN----------SSFQIEMIKYAKKTYP--------ELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 258 eaGad~I~i~~~~g~----------~~~~~~~i~~l~~~~~--------~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++|++++.+....|. .......+..+.+... ++|||+ |++.++.++.+++.+|||++.++
T Consensus 303 ~aGad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG 381 (503)
T 1me8_A 303 DAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLG 381 (503)
T ss_dssp HHTCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HhCCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 999999988332211 1123344444433221 478887 89999999999999999999886
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.5e-09 Score=110.45 Aligned_cols=195 Identities=18% Similarity=0.163 Sum_probs=55.4
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCC-C-CcceEEEe
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGP-D-GKWMVGAA 242 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~-~-~~l~v~a~ 242 (505)
.+.++|.+ +++++++++++.+++++|.++++..+||+|+++++|+||..|+......... ..+. . ..-.+.+.
T Consensus 89 ~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~g~lvGIVt~rDl~~~~~~~~~---V~~vMtp~~~~vtv~ 163 (490)
T 4avf_A 89 KHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVEQGELVGIVTGRDLRVKPNAGDT---VAAIMTPKDKLVTAR 163 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEECCEEEEEEEhHHhhhccccCCc---HHHHhccCCCCEEEC
Confidence 56788988 9999999999999999999999999999999999999999999643221111 1110 0 00011111
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh-CC----------CceEEEccc-CCHHHHHHHHHcC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT-YP----------ELDVIGGNV-VTMYQAQNLIEAG 310 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~-~~----------~~~Vi~g~V-~t~e~a~~l~~aG 310 (505)
......+..+.+.+.+...+.|....|...+.+..-..++.. +| .+.+.+|.- .+.+.++.+.++|
T Consensus 164 --~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~aG 241 (490)
T 4avf_A 164 --EGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAAG 241 (490)
T ss_dssp ---------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTT
T ss_pred --CCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhcc
Confidence 112234555556666666654433333333333322222211 11 122233332 4578899999999
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+|+|.+....| +.......+..++ +.+ ++||++ |++.+..++.++..+|||+|.+|
T Consensus 242 ~d~I~id~a~g----------~~~~~~~~v~~i~---~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~vg 298 (490)
T 4avf_A 242 VDVVVVDTAHG----------HSKGVIERVRWVK---QTFPDVQVIG-GNIATAEAAKALAEAGADAVKVG 298 (490)
T ss_dssp CSEEEEECSCC----------SBHHHHHHHHHHH---HHCTTSEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred cceEEecccCC----------cchhHHHHHHHHH---HHCCCceEEE-eeeCcHHHHHHHHHcCCCEEEEC
Confidence 99998853211 1112233444433 334 588988 67999999999999999999986
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-07 Score=90.71 Aligned_cols=181 Identities=11% Similarity=0.083 Sum_probs=123.0
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
.+.++.+..+..+.+.+.|...+-|+++ +.+-| +..++-...... .+++-...... ....+..+
T Consensus 74 ~i~~~~dp~~~A~~y~~~GA~~IsVltd~~~f~G--s~~~L~~ir~~v-----------~lPVl~Kdfi~--d~~qi~ea 138 (272)
T 3tsm_A 74 LIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQG--APEFLTAARQAC-----------SLPALRKDFLF--DPYQVYEA 138 (272)
T ss_dssp ESCSSCCHHHHHHHHHHTTCSEEEEECCSTTTCC--CHHHHHHHHHTS-----------SSCEEEESCCC--STHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHCCCCEEEEeccccccCC--CHHHHHHHHHhc-----------CCCEEECCccC--CHHHHHHH
Confidence 3556778889999999999999999988 76667 566665443221 12222222111 11246667
Q ss_pred HHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcCh
Q 010640 257 VKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
Q Consensus 257 ieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~ 336 (505)
.+.|+|.+.+..+.=......+.++..++. +..+++ ++.+.+++..+.++|+|.|-+. .+....+.. .
T Consensus 139 ~~~GAD~VlLi~a~L~~~~l~~l~~~a~~l--Gl~~lv-evh~~eEl~~A~~~ga~iIGin--------nr~l~t~~~-d 206 (272)
T 3tsm_A 139 RSWGADCILIIMASVDDDLAKELEDTAFAL--GMDALI-EVHDEAEMERALKLSSRLLGVN--------NRNLRSFEV-N 206 (272)
T ss_dssp HHTTCSEEEEETTTSCHHHHHHHHHHHHHT--TCEEEE-EECSHHHHHHHTTSCCSEEEEE--------CBCTTTCCB-C
T ss_pred HHcCCCEEEEcccccCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHhcCCCEEEEC--------CCCCccCCC-C
Confidence 889999998866532223344555555554 777777 8899999999999999988332 223333322 2
Q ss_pred HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 337 ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 337 ~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
+.....+..... .++|+|+.|||.++.|+.++..+||++|.+|+.|..+
T Consensus 207 l~~~~~L~~~ip-~~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~ 255 (272)
T 3tsm_A 207 LAVSERLAKMAP-SDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQ 255 (272)
T ss_dssp THHHHHHHHHSC-TTSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTS
T ss_pred hHHHHHHHHhCC-CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 344444444333 2689999999999999999999999999999999754
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.4e-09 Score=110.41 Aligned_cols=197 Identities=17% Similarity=0.183 Sum_probs=54.3
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccC-CCC-cceEEE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVG-PDG-KWMVGA 241 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~-~l~v~a 241 (505)
.+.++|++ +++++.+++++.+++++|.++++..+||+|+ ++++|+||..|+......... ..+ ... .-.+.+
T Consensus 96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~~~~~---v~~im~~~~~~~~v 170 (494)
T 1vrd_A 96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKNLSKK---IKDLMTPREKLIVA 170 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcCCCCc---HHHHhCCCCCCeEE
Confidence 46788998 9999999999999999999999999999998 999999999999863211000 111 000 001111
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-C------CceEEE-cccCC----HHHHHHHHHc
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-P------ELDVIG-GNVVT----MYQAQNLIEA 309 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~------~~~Vi~-g~V~t----~e~a~~l~~a 309 (505)
. ......+.++.+.+.+...+.|....|...+.+..-..++... + +..+++ +.+.+ .+.+..+.++
T Consensus 171 ~--~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l~~a 248 (494)
T 1vrd_A 171 P--PDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVKA 248 (494)
T ss_dssp ----------------------------------------CHHHHTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHT
T ss_pred C--CCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccccccccchhhhccccccCcCHhHHHHHHHHHHh
Confidence 1 1122445555666667666544333333223333222222211 1 112222 23333 6788999999
Q ss_pred CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 310 GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 310 Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
|+|++.+....| .....++.+..+++... ++||+. |++.+..++.++..+|||++.+|.
T Consensus 249 Gvd~v~i~~~~G----------~~~~~~e~i~~i~~~~p--~~pvi~-g~~~t~e~a~~l~~~G~d~I~v~~ 307 (494)
T 1vrd_A 249 GVDVIVIDTAHG----------HSRRVIETLEMIKADYP--DLPVVA-GNVATPEGTEALIKAGADAVKVGV 307 (494)
T ss_dssp TCSEEEECCSCC----------SSHHHHHHHHHHHHHCT--TSCEEE-EEECSHHHHHHHHHTTCSEEEECS
T ss_pred CCCEEEEEecCC----------chHHHHHHHHHHHHHCC--CceEEe-CCcCCHHHHHHHHHcCCCEEEEcC
Confidence 999998853211 11113344444443321 589988 789999999999999999999864
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=108.49 Aligned_cols=194 Identities=17% Similarity=0.190 Sum_probs=113.7
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCC-C-C-cceEE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGP-D-G-KWMVG 240 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~-~-~-~l~v~ 240 (505)
.+.++|++ +++++.+++++.+++++|.++++..+||+|+ ++++|+||.+|+......... ..+. . . .+. .
T Consensus 90 ~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~~~~~~~---v~diM~p~~~~v-t 163 (496)
T 4fxs_A 90 IFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFVTDLTKS---VAAVMTPKERLA-T 163 (496)
T ss_dssp HCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTCCCTTSB---GGGTSEEGGGCC-E
T ss_pred cccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhcccCCCc---HHHHhcCCCCCE-E
Confidence 45678988 9999999999999999999999999999998 999999999999743221111 1111 0 0 111 1
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH-hCC--------CceEEE--cc-cCCHHHHHHHHH
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK-TYP--------ELDVIG--GN-VVTMYQAQNLIE 308 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~-~~~--------~~~Vi~--g~-V~t~e~a~~l~~ 308 (505)
+.. .....+.++.+.+.+...+.+....|...+.+..-..++. .+| .+.+.+ |. ..+.+.++.+.+
T Consensus 164 v~~--~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~~~p~a~~d~~grL~v~aavG~~~d~~~~a~~l~~ 241 (496)
T 4fxs_A 164 VKE--GATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAESKPNACKDEQGRLRVGAAVGAAPGNEERVKALVE 241 (496)
T ss_dssp EEC--C----CGGGTCC---CCCEEEECTTSBCCEEECCC-----CCCTTCCBCTTSCBCCEEECCSSSCCHHHHHHHHH
T ss_pred ECC--CCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhhcccchhhhcccceeeeeeeccccchHHHHHHHHh
Confidence 111 1123344444555666655443333322111111111111 111 122222 22 246899999999
Q ss_pred cCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 309 AGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 309 aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+|+|.|.+....+ +....+..+..+++ .+ ++||++ |++.+..++.++..+|||+|.+|
T Consensus 242 aG~d~I~id~a~g----------~~~~~~~~i~~ir~---~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 242 AGVDVLLIDSSHG----------HSEGVLQRIRETRA---AYPHLEIIG-GNVATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp TTCSEEEEECSCT----------TSHHHHHHHHHHHH---HCTTCCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred ccCceEEeccccc----------cchHHHHHHHHHHH---HCCCceEEE-cccCcHHHHHHHHHhCCCEEEEC
Confidence 9999998853211 11122334444433 33 689988 77999999999999999999986
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-07 Score=94.85 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=90.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC---------------chhHHHHHHHHHHhCCCceEEEcc---cC-------CH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN---------------SSFQIEMIKYAKKTYPELDVIGGN---VV-------TM 300 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~---V~-------t~ 300 (505)
++...+.++.+.+.|+|.|.++..+.. ...+.+.++.+++.. ++||.++- .. ..
T Consensus 69 p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v-~~PV~vKiR~g~~~~~~~~~~~ 147 (350)
T 3b0p_A 69 PKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV-RVPVTVKMRLGLEGKETYRGLA 147 (350)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHC-SSCEEEEEESCBTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHh-CCceEEEEecCcCccccHHHHH
Confidence 345667777788889999999864322 234567778888876 78888842 21 24
Q ss_pred HHHHHHHHcCCCEEEEccCCc--ceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 301 YQAQNLIEAGVDGLRVGMGSG--SICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 301 e~a~~l~~aGad~I~v~~g~g--~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+.++.+.++|+|+|.+..+.. +....... .........+..+++ .. ++|||+.|||.++.|+.++++ |||+|
T Consensus 148 ~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~-~~~~~~~~~i~~ik~---~~~~iPVianGgI~s~eda~~~l~-GaD~V 222 (350)
T 3b0p_A 148 QSVEAMAEAGVKVFVVHARSALLALSTKANR-EIPPLRHDWVHRLKG---DFPQLTFVTNGGIRSLEEALFHLK-RVDGV 222 (350)
T ss_dssp HHHHHHHHTTCCEEEEECSCBC-----------CCCCCHHHHHHHHH---HCTTSEEEEESSCCSHHHHHHHHT-TSSEE
T ss_pred HHHHHHHHcCCCEEEEecCchhcccCccccc-CCCcccHHHHHHHHH---hCCCCeEEEECCcCCHHHHHHHHh-CCCEE
Confidence 567889999999999852210 00000000 000012344444443 34 799999999999999999998 99999
Q ss_pred EecccccCC
Q 010640 378 MMGSFLAGS 386 (505)
Q Consensus 378 ~~G~~f~~~ 386 (505)
|+|+.|+..
T Consensus 223 ~iGRa~l~~ 231 (350)
T 3b0p_A 223 MLGRAVYED 231 (350)
T ss_dssp EECHHHHHC
T ss_pred EECHHHHhC
Confidence 999998754
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.9e-08 Score=89.06 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=92.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcc--
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGS-- 322 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~-- 322 (505)
.++..+.++.+.+.|++++.++.... ...+.++.+|+.+| +.++.++++.+.++++.+.++|+|++ ++.+-..
T Consensus 21 ~~~~~~~~~~~~~~G~~~iev~~~~~---~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~ 96 (205)
T 1wa3_A 21 VEEAKEKALAVFEGGVHLIEITFTVP---DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEI 96 (205)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTST---THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHH
Confidence 34566778888899999999977543 33556777777764 57777888899999999999999999 6522110
Q ss_pred --------------eeeccc-----cccc---C-cC-hHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 323 --------------ICTTQE-----VCAV---G-RG-QATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 323 --------------~~~~~~-----~~g~---g-~p-~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
..+..+ ..|. . .| ....+..+.+..... ++||+++|||. ..++.+++.+||++|
T Consensus 97 ~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v 175 (205)
T 1wa3_A 97 SQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAV 175 (205)
T ss_dssp HHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCE
T ss_pred HHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEE
Confidence 000000 0000 0 01 111233344444445 69999999996 789999999999999
Q ss_pred EecccccC
Q 010640 378 MMGSFLAG 385 (505)
Q Consensus 378 ~~G~~f~~ 385 (505)
.+|+.|..
T Consensus 176 ~vGs~i~~ 183 (205)
T 1wa3_A 176 GVGSALVK 183 (205)
T ss_dssp EECHHHHC
T ss_pred EECccccC
Confidence 99998864
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=95.94 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=96.4
Q ss_pred HHHHcCccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEcccC--CH----HHHHHHHHcCCCEEEEcc
Q 010640 255 HLVKAGVNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGGNVV--TM----YQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 255 ~lieaGad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g~V~--t~----e~a~~l~~aGad~I~v~~ 318 (505)
.+...++|+++++.++.+. ....+.++.+++.. ..|+.++-.. +. ..+..+.+.+.......+
T Consensus 150 ~~~~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~-~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i 228 (354)
T 3tjx_A 150 AVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVY-PHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCI 228 (354)
T ss_dssp HHHHHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHC-CSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred HhhhcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHh-hcccccccCCCCCchhHHHHHHHHHhhcccchhhee
Confidence 3344579999998865332 23445566666665 6777775322 21 122333344333332222
Q ss_pred CC---cc-ee---------ecccccccCcChHH--HHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 319 GS---GS-IC---------TTQEVCAVGRGQAT--AVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 319 g~---g~-~~---------~~~~~~g~g~p~~~--~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.. +. +. ......|...+.+. ++..+++..+.. ++|||+.|||.++.|+.+.+.+||++||+||.
T Consensus 229 ~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta 308 (354)
T 3tjx_A 229 NSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTA 308 (354)
T ss_dssp CCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHH
T ss_pred cccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChh
Confidence 11 00 00 00011222222222 333344443332 58999999999999999999999999999998
Q ss_pred ccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhcc
Q 010640 383 LAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDL 462 (505)
Q Consensus 383 f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~ 462 (505)
|.. +| + .++.++..+|+..|...
T Consensus 309 ~~y----------------------------------------------~G---------P--~~~~~I~~~L~~~L~~~ 331 (354)
T 3tjx_A 309 LQE----------------------------------------------EG---------P--SIFERLTSELLGVMAKK 331 (354)
T ss_dssp HHH----------------------------------------------HC---------T--THHHHHHHHHHHHHHHH
T ss_pred hhh----------------------------------------------cC---------c--hHHHHHHHHHHHHHHHc
Confidence 741 11 1 45678999999999999
Q ss_pred CCCCHHHHHHhh
Q 010640 463 GASSLQSAHDLL 474 (505)
Q Consensus 463 G~~~~~~l~~~~ 474 (505)
|.++++|++.++
T Consensus 332 G~~si~e~~G~~ 343 (354)
T 3tjx_A 332 RYQTLDEFRGKV 343 (354)
T ss_dssp TCCSGGGTTTCC
T ss_pred CCCCHHHHhChh
Confidence 999999998764
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-07 Score=90.38 Aligned_cols=180 Identities=14% Similarity=0.181 Sum_probs=112.0
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+.++.+..+..+...+.|...+-|+++ +.+-|-. .++-...... .+++-...... ....++.+.
T Consensus 68 i~~~~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~--~~l~~ir~~v-----------~lPvl~kdfii--d~~qv~~A~ 132 (272)
T 3qja_A 68 LATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSL--DDLDAVRASV-----------SIPVLRKDFVV--QPYQIHEAR 132 (272)
T ss_dssp -----CHHHHHHHHHHTTCSEEEEECCGGGHHHHH--HHHHHHHHHC-----------SSCEEEESCCC--SHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHcCCCEEEEecChhhcCCCH--HHHHHHHHhC-----------CCCEEECcccc--CHHHHHHHH
Confidence 445667788889999999999999887 6666632 2332221110 11121111111 223466777
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChH
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
+.|+|.+.+....-......+.++..++. +..+++ ++.+.+++..+.++|+|.|-+.+ +....+. +.+
T Consensus 133 ~~GAD~VlLi~a~l~~~~l~~l~~~a~~l--Gl~~lv-ev~t~ee~~~A~~~Gad~IGv~~--------r~l~~~~-~dl 200 (272)
T 3qja_A 133 AHGADMLLLIVAALEQSVLVSMLDRTESL--GMTALV-EVHTEQEADRALKAGAKVIGVNA--------RDLMTLD-VDR 200 (272)
T ss_dssp HTTCSEEEEEGGGSCHHHHHHHHHHHHHT--TCEEEE-EESSHHHHHHHHHHTCSEEEEES--------BCTTTCC-BCT
T ss_pred HcCCCEEEEecccCCHHHHHHHHHHHHHC--CCcEEE-EcCCHHHHHHHHHCCCCEEEECC--------Ccccccc-cCH
Confidence 89999998843322223344455555554 777776 78899999999999999986642 1111111 122
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
..+..+.+... .++|+|+.|||.++.|+.++..+||++|.+|+.|..+
T Consensus 201 ~~~~~l~~~v~-~~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a 248 (272)
T 3qja_A 201 DCFARIAPGLP-SSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTS 248 (272)
T ss_dssp THHHHHGGGSC-TTSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred HHHHHHHHhCc-ccCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 33333322221 1689999999999999999999999999999999754
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=98.70 Aligned_cols=191 Identities=12% Similarity=0.149 Sum_probs=77.7
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccc-cccccCCCceE
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIF-DYMRDCSSNVS 178 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~-~im~~~~~~~~ 178 (505)
.+.++|+.++ ++++++.++++|.++|.+ ++ +||||+ +++|+|+||.+|+......+.... +--.+ -.+-
T Consensus 201 ~V~evMT~~l--vt~~~~~~leeA~~iL~~~kieklpVVd~---~g~LvGlIT~kDi~k~~~~p~A~k~d~~gr--L~Vg 273 (556)
T 4af0_A 201 PIKSVMTTEV--VTGSSPITLEKANSLLRETKKGKLPIVDS---NGHLVSLVARSDLLKNQNYPYASKVPESKQ--LYCG 273 (556)
T ss_dssp --------------------------------------------------------------CTTCCBCTTTCC--BCCE
T ss_pred Ehhhhcccce--EEecCCCCHHHHHHHHHHccccceeEEcc---CCcEEEEEEechhhhhhhCCcchhcchhhc--eeeE
Confidence 4556888887 999999999999999999 77 999998 999999999999964321110000 00000 0111
Q ss_pred --ecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHH
Q 010640 179 --VPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLE 254 (505)
Q Consensus 179 --v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~ 254 (505)
+.-...-.+-++.|.+.+++ +.|+|- |.-.+++..-.-++.. ++. -.+++.++. ..+.++
T Consensus 274 AAVgv~~d~~eR~~aLv~AGvD-~iviD~ahGhs~~v~~~i~~ik~~-~p~----------~~viaGNVa----T~e~a~ 337 (556)
T 4af0_A 274 AAIGTRPGDKDRLKLLAEAGLD-VVVLDSSQGNSVYQIEFIKWIKQT-YPK----------IDVIAGNVV----TREQAA 337 (556)
T ss_dssp EEECSSHHHHHHHHHHHHTTCC-EEEECCSCCCSHHHHHHHHHHHHH-CTT----------SEEEEEEEC----SHHHHH
T ss_pred EEeccCccHHHHHHHHHhcCCc-EEEEeccccccHHHHHHHHHHHhh-CCc----------ceEEecccc----CHHHHH
Confidence 12222345666778888997 456765 6655554333333322 111 123444553 447788
Q ss_pred HHHHcCccEEEEeCCC----------CCchhHHHHHHHHHH---hCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 255 HLVKAGVNVVVLDSSQ----------GNSSFQIEMIKYAKK---TYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 255 ~lieaGad~I~i~~~~----------g~~~~~~~~i~~l~~---~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.|+++|+|++-+.... |.....+..+..+.+ .+ ++|||+ |++.+..+..+++.+|||++.++
T Consensus 338 ~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~-~vpvIADGGI~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 338 QLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRF-GIPCIADGGIGNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp HHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHc-CCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence 8999999999886532 222234444444432 33 789999 88999999999999999999997
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.2e-08 Score=93.00 Aligned_cols=175 Identities=16% Similarity=0.128 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+..+..+.+.+.+.+.+-|.+. +...|-.+. ++++.... ..+..+.+...+. ..+.++.++++|+|
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~--------~~~ipv~v~ggI~----~~~~~~~~l~~Gad 99 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQ--------AMDIKVELSGGIR----DDDTLAAALATGCT 99 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHH--------HCSSEEEEESSCC----SHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHH--------hcCCcEEEECCcC----CHHHHHHHHHcCCC
Confidence 6677789999999999998875 555555555 55555421 1112233333342 23568888999999
Q ss_pred EEEEeCCC-CCchhHHHHHHHHHHhCC-CceEEEc----cc----------CCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 263 VVVLDSSQ-GNSSFQIEMIKYAKKTYP-ELDVIGG----NV----------VTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 263 ~I~i~~~~-g~~~~~~~~i~~l~~~~~-~~~Vi~g----~V----------~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
.+.++... .++ +.+..+.+.+. .+.+.+. .+ ...+.++.+.+.|++.|.+-. .+
T Consensus 100 ~V~lg~~~l~~p----~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~------~~ 169 (244)
T 1vzw_A 100 RVNLGTAALETP----EWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTD------IA 169 (244)
T ss_dssp EEEECHHHHHCH----HHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEE------C-
T ss_pred EEEECchHhhCH----HHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEec------cC
Confidence 99885521 111 22333333321 1111111 11 225667889999999886531 01
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh---CCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL---GASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l---GA~~V~~G~~f~~ 385 (505)
+...+.| +.+..+..++ +..++|||++|||.++.|+.+++.+ ||++|++|+.|..
T Consensus 170 ~~~~~~g-~~~~~~~~i~---~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~ 227 (244)
T 1vzw_A 170 KDGTLQG-PNLELLKNVC---AATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA 227 (244)
T ss_dssp ------C-CCHHHHHHHH---HTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred cccccCC-CCHHHHHHHH---HhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHc
Confidence 1111112 2344454443 3457999999999999999999999 9999999999864
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-08 Score=76.44 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=49.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc--c-c---ccccccccccccCCCceEe
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN--L-S---DNKVKIFDYMRDCSSNVSV 179 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~--~-~---~~~~~v~~im~~~~~~~~v 179 (505)
++++|++|+.+|+++|.+ ++ +||+| +++++||||.+|+.. . . ..+.++.++|++ +++++
T Consensus 3 vtv~p~~tv~ea~~~M~~~~i~~~~V~d----~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~--~~iTV 70 (70)
T 3ghd_A 3 IVVQPKDTVDRVAKILSRNKAGSAVVME----GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTK--NPVKI 70 (70)
T ss_dssp EEECTTCBHHHHHHHHHHTTCSEEEEEE----TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEE--CTTCC
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCC--CCeEC
Confidence 899999999999999999 77 99998 689999999999852 1 1 235689999998 77664
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.3e-08 Score=92.04 Aligned_cols=175 Identities=14% Similarity=0.079 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+..+..+.+.+.+.+.+-|.+. +...+-.+. ++++.... .....+.+...+. ..+.++.++++|+|
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~--------~~~ipv~v~ggi~----~~~~~~~~l~~Gad 98 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVG--------KLDVQVELSGGIR----DDESLAAALATGCA 98 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHH--------HCSSEEEEESSCC----SHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHH--------hcCCcEEEECCCC----CHHHHHHHHHcCCC
Confidence 5677788889999999998875 544454444 55554421 1111233333332 23568888999999
Q ss_pred EEEEeCCC-CCchhHHHHHHHHHHhCC-CceEEEc--------cc----------CCHHHHHHHHHcCCCEEEEccCCcc
Q 010640 263 VVVLDSSQ-GNSSFQIEMIKYAKKTYP-ELDVIGG--------NV----------VTMYQAQNLIEAGVDGLRVGMGSGS 322 (505)
Q Consensus 263 ~I~i~~~~-g~~~~~~~~i~~l~~~~~-~~~Vi~g--------~V----------~t~e~a~~l~~aGad~I~v~~g~g~ 322 (505)
.+.++... .++ +.+..+.+.++ .+.+.+. +| ...+.++.+.++|++.|.+-.
T Consensus 99 ~V~lg~~~l~~p----~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~---- 170 (244)
T 2y88_A 99 RVNVGTAALENP----QWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTD---- 170 (244)
T ss_dssp EEEECHHHHHCH----HHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEEEE----
T ss_pred EEEECchHhhCh----HHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEEEEe----
Confidence 99885532 111 22333333321 1111111 11 236778899999999886521
Q ss_pred eeecccccccC-cChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh---CCCEEEecccccCC
Q 010640 323 ICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL---GASTVMMGSFLAGS 386 (505)
Q Consensus 323 ~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l---GA~~V~~G~~f~~~ 386 (505)
+...+.+ .+.+..+..++ +..++|||++|||.++.|+.+++.+ ||++|++|+.|...
T Consensus 171 ----~~~~~~~~g~~~~~~~~l~---~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~ 231 (244)
T 2y88_A 171 ----ITKDGTLGGPNLDLLAGVA---DRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYAR 231 (244)
T ss_dssp ----TTTTTTTSCCCHHHHHHHH---TTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTT
T ss_pred ----cCCccccCCCCHHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCC
Confidence 1111111 13444554443 3457999999999999999999999 99999999998753
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.5e-07 Score=83.67 Aligned_cols=125 Identities=20% Similarity=0.197 Sum_probs=82.7
Q ss_pred HHHHHHHHHH-c-CccEEEEeCCC------CCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC
Q 010640 249 DKERLEHLVK-A-GVNVVVLDSSQ------GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 249 ~~e~~~~lie-a-Gad~I~i~~~~------g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
....++...| . |-+++-+.... .+....++..+.+.+. +..++.=.+.++..++.+.++|++++..-...
T Consensus 89 Av~~a~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~--Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~p 166 (265)
T 1wv2_A 89 AVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKD--GFDVMVYTSDDPIIARQLAEIGCIAVMPLAGL 166 (265)
T ss_dssp HHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTT--TCEEEEEECSCHHHHHHHHHSCCSEEEECSSS
T ss_pred HHHHHHHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhCCCEEEeCCcc
Confidence 3334444444 2 67887664421 1223344444444444 55666336789999999999999999662110
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.-.|.|+.+...+..+.+ ..++|||++|||.++.|+++|+.+||++|++||.+..
T Consensus 167 -------IGsG~Gi~~~~lI~~I~e---~~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~ 221 (265)
T 1wv2_A 167 -------IGSGLGICNPYNLRIILE---EAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH 221 (265)
T ss_dssp -------TTCCCCCSCHHHHHHHHH---HCSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred -------CCCCCCcCCHHHHHHHHh---cCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 001223444555555544 3579999999999999999999999999999999863
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-07 Score=81.30 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=54.5
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+.+|+++|++ +++++.+++++.+|+++|.+++++.+||+|+ |+++|+||..|+++...
T Consensus 17 ~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~ 75 (170)
T 4esy_A 17 QVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSI 75 (170)
T ss_dssp TSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTC
T ss_pred CCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHh
Confidence 5689999999 9999999999999999999999999999999 99999999999988654
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.3e-06 Score=78.95 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=88.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.++.+++.|++++.+.... ....+.++.+++.+|++.+.+|++.+.+.++.+.++|+|++..+.
T Consensus 28 ~~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p~------- 97 (224)
T 1vhc_A 28 ADDILPLADTLAKNGLSVAEITFRS---EAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPG------- 97 (224)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECSS-------
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccC---chHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEECC-------
Confidence 4557889999999999999997543 245678888899998888889999999999999999999994321
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.. .++.+.+++.++|+|. |+.|+.++.+|+.+|||.|.+
T Consensus 98 ---------~d----~~v~~~ar~~g~~~i~--Gv~t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 98 ---------LN----PKIVKLCQDLNFPITP--GVNNPMAIEIALEMGISAVKF 136 (224)
T ss_dssp ---------CC----HHHHHHHHHTTCCEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred ---------CC----HHHHHHHHHhCCCEEe--ccCCHHHHHHHHHCCCCEEEE
Confidence 01 1333455567899998 699999999999999999988
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-08 Score=92.91 Aligned_cols=135 Identities=12% Similarity=0.083 Sum_probs=46.1
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEec
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~ 180 (505)
..++|..++ +++++++++.+++++|.+ ++ +||+|+ +|+++|+||.+|+.........+.+.+++. .+.+..
T Consensus 74 v~~im~~~~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiit~~Dil~~~~~~~~~~~~~~~l-~~~~~~ 147 (213)
T 1vr9_A 74 VFNKVSLPD--FFVHEEDNITHALLLFLEHQEPYLPVVDE---EMRLKGAVSLHDFLEALIEALAMDVPGIRF-SVLLED 147 (213)
T ss_dssp SGGGCBCTT--CCEETTSBHHHHHHHHHHCCCSEEEEECT---TCBEEEEEEHHHHHHHHHHSCC---------------
T ss_pred HHHHccCCC--EEECCCCcHHHHHHHHHHhCCCEEEEEcC---CCEEEEEEEHHHHHHHHHHHhcCCCCcEEE-EEEeCC
Confidence 556788888 999999999999999988 76 999997 799999999999963222122234444431 111113
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHc
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKA 259 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~liea 259 (505)
...++.++.++|.+++++.++|++. |.- +...+...+. ..+..+.++.|.+.
T Consensus 148 ~~~~l~~~~~~l~~~~~~~l~V~~~~~~~--------------------------~~~~v~~~v~-~~~~~~i~~~le~~ 200 (213)
T 1vr9_A 148 KPGELRKVVDALALSNINILSVITTRSGD--------------------------GKREVLIKVD-AVDEGTLIKLFESL 200 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccHHHHHHHHHHCCCcEEEEEEEecCC--------------------------CEEEEEEEEc-cCCHHHHHHHHHHC
Confidence 4456999999999999999998753 321 1112222322 22355667777778
Q ss_pred CccEEEEeCCCC
Q 010640 260 GVNVVVLDSSQG 271 (505)
Q Consensus 260 Gad~I~i~~~~g 271 (505)
|.+++.++..+|
T Consensus 201 g~~v~~~~~~~g 212 (213)
T 1vr9_A 201 GIKIESIEKEEG 212 (213)
T ss_dssp ------------
T ss_pred CCEEEEeecccC
Confidence 888877655544
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1e-06 Score=84.77 Aligned_cols=178 Identities=17% Similarity=0.196 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..+..+.+.+.+.+.+.|.|- +...+.-..-++++.... ..+..+.+...+. ..+.++.+++.|
T Consensus 29 ~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~--------~~~ipvi~~ggI~----~~~~~~~~~~~G 96 (253)
T 1thf_D 29 SGDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAE--------QIDIPFTVGGGIH----DFETASELILRG 96 (253)
T ss_dssp TTCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHT--------TCCSCEEEESSCC----SHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHcCCCEEEEECCchhhcCCcccHHHHHHHHH--------hCCCCEEEeCCCC----CHHHHHHHHHcC
Confidence 345677788999999999999875 432221111122222211 1112333433442 235688888999
Q ss_pred ccEEEEeCCC-CCchhHHHHHHHHHHhCC--CceEEEcc-------------------cCCHHHHHHHHHcCCCEEEEcc
Q 010640 261 VNVVVLDSSQ-GNSSFQIEMIKYAKKTYP--ELDVIGGN-------------------VVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 261 ad~I~i~~~~-g~~~~~~~~i~~l~~~~~--~~~Vi~g~-------------------V~t~e~a~~l~~aGad~I~v~~ 318 (505)
+|.+.+.... .++ +.+..+.+.+. .+.+.+.. ....+.++.+.++|++.|.+..
T Consensus 97 ad~V~lg~~~l~~p----~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~ 172 (253)
T 1thf_D 97 ADKVSINTAAVENP----SLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTS 172 (253)
T ss_dssp CSEEEESHHHHHCT----HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEE
T ss_pred CCEEEEChHHHhCh----HHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEe
Confidence 9999884421 111 12333333321 11122211 1235668899999999886621
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.++.....| +.++.+..+ ++..++|||++|||.++.|+.+++..||++|++|+.|..
T Consensus 173 ------~~~~g~~~g-~~~~~~~~l---~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~ 229 (253)
T 1thf_D 173 ------IDRDGTKSG-YDTEMIRFV---RPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF 229 (253)
T ss_dssp ------TTTTTSCSC-CCHHHHHHH---GGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred ------ccCCCCCCC-CCHHHHHHH---HHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence 011111112 234444433 344579999999999999999999999999999999864
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-06 Score=88.37 Aligned_cols=132 Identities=21% Similarity=0.217 Sum_probs=91.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEccc------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGGNV------ 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g~V------ 297 (505)
++.+.++.+.++|.|.|.++..+|+ + ....+.++.+++.+ +.||.++--
T Consensus 145 ~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~ 223 (338)
T 1z41_A 145 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD 223 (338)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCC
Confidence 3566677888899999999986532 0 22578888889988 788877511
Q ss_pred --CC----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 298 --VT----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 298 --~t----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
.+ .+.++.+.++|+|+|.++.+... ......+.+ .....+..++ +..++|||+.|||.++.++.+++.
T Consensus 224 ~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~--~~~~~~~~~-~~~~~~~~ir---~~~~iPVi~~Ggi~s~~~a~~~l~ 297 (338)
T 1z41_A 224 KGLDIADHIGFAKWMKEQGVDLIDCSSGALV--HADINVFPG-YQVSFAEKIR---EQADMATGAVGMITDGSMAEEILQ 297 (338)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSS--CCCCCCCTT-TTHHHHHHHH---HHHCCEEEECSSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCccc--cCCCCCCcc-chHHHHHHHH---HHCCCCEEEECCCCCHHHHHHHHH
Confidence 12 34568888999999998643211 000000000 0233333333 345799999999999999999999
Q ss_pred hC-CCEEEecccccCC
Q 010640 372 LG-ASTVMMGSFLAGS 386 (505)
Q Consensus 372 lG-A~~V~~G~~f~~~ 386 (505)
.| ||+|++|+.|+..
T Consensus 298 ~G~aD~V~iGR~~i~n 313 (338)
T 1z41_A 298 NGRADLIFIGRELLRD 313 (338)
T ss_dssp TTSCSEEEECHHHHHC
T ss_pred cCCceEEeecHHHHhC
Confidence 99 9999999999753
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-06 Score=83.16 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=91.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCC--------------
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLG-------------- 227 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~-------------- 227 (505)
..++.++|++ +++++.+++++.+|+++|.+++++++||+|+ |+++|+||..|+++........
T Consensus 6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v~ 83 (245)
T 3l2b_A 6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNIL 83 (245)
T ss_dssp CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHHH
T ss_pred cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHHH
Confidence 5679999998 9999999999999999999999999999998 9999999999999876432100
Q ss_pred -----------CCccCCCCcceEEEeec-------------CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHH
Q 010640 228 -----------KGTVGPDGKWMVGAAIG-------------TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYA 283 (505)
Q Consensus 228 -----------~~~~d~~~~l~v~a~i~-------------~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l 283 (505)
.......+.+.+++... ...+..+....+++.++.++.+.........+. ...
T Consensus 84 ~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~---~~a 160 (245)
T 3l2b_A 84 DTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEII---ELA 160 (245)
T ss_dssp HHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHH---HHH
T ss_pred HHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHH---HHH
Confidence 00000111222221100 001245677788899999998855444443333 333
Q ss_pred HHhCCCceEEEcccCCHHHHHH
Q 010640 284 KKTYPELDVIGGNVVTMYQAQN 305 (505)
Q Consensus 284 ~~~~~~~~Vi~g~V~t~e~a~~ 305 (505)
++. +++++.....+...++.
T Consensus 161 ~~~--~~~~i~t~~d~~~~~~~ 180 (245)
T 3l2b_A 161 KKN--NITVITTPHDSFTASRL 180 (245)
T ss_dssp HHH--TCEEEECSSCHHHHHHH
T ss_pred HHc--CCeEEEeCCChHHHHHH
Confidence 344 78888866655555444
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-07 Score=91.97 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHCCCCeeEEee----C-Ceeee--EEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 184 DLGQIDEVLEKNDVDFVVLEK----D-GERLD--VVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd----~-g~l~G--iIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
+..+.++.+.+.+.+.+-+++ . +..-| .....++++..... ..+++...+... ..+.++.+
T Consensus 29 ~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~----------~~iPv~~k~r~g--~~~~~~~~ 96 (305)
T 2nv1_A 29 INAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNA----------VSIPVMAKARIG--HIVEARVL 96 (305)
T ss_dssp SSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHH----------CSSCEEEEECTT--CHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHh----------CCCCEEeccccc--chHHHHHH
Confidence 445777888888888876654 2 33333 22222333332110 012232332111 24667778
Q ss_pred HHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcc--eeec--c--c--
Q 010640 257 VKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGS--ICTT--Q--E-- 328 (505)
Q Consensus 257 ieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~--~~~~--~--~-- 328 (505)
.+.|+|.+...... ......+.++ ...+ +.++++ .+.+.+++..+.++|+|+|.+....|. ...+ . .
T Consensus 97 ~a~GAd~V~~~~~l-~~~~~~~~i~--~~~~-g~~v~~-~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~ 171 (305)
T 2nv1_A 97 EAMGVDYIDESEVL-TPADEEFHLN--KNEY-TVPFVC-GCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVN 171 (305)
T ss_dssp HHHTCSEEEECTTS-CCSCSSCCCC--GGGC-SSCEEE-EESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHHHHHH
T ss_pred HHCCCCEEEEeccC-CHHHHHHHHH--Hhcc-CCcEEE-EeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhhhhhh
Confidence 88999999632111 1111111111 1223 566666 677888888888999999988421110 0000 0 0
Q ss_pred -----cccc-----------CcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 329 -----VCAV-----------GRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 329 -----~~g~-----------g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..|. ..+.+..+..++ +..++||+ +.|||.++.|+.+++.+||++|++|+.|..
T Consensus 172 ~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~---~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~ 243 (305)
T 2nv1_A 172 AQVRKVVAMSEDELMTEAKNLGAPYELLLQIK---KDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 243 (305)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH---HHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGG
T ss_pred ccchhhccccchhhhcccccccccHHHHHHHH---HhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHc
Confidence 0000 112233343333 33578999 999999999999999999999999999864
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-06 Score=87.12 Aligned_cols=131 Identities=21% Similarity=0.193 Sum_probs=90.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEccc------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGGNV------ 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g~V------ 297 (505)
++.+.++.+.++|.|.|.+|.++|+ + ....+.++.+++.+ +.||.++--
T Consensus 145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~ 223 (340)
T 3gr7_A 145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHP 223 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCST
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccC
Confidence 3566677788899999999976521 1 12578888889888 778877411
Q ss_pred ------CCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 298 ------VTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 298 ------~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
...+.++.+.++|+|+|.++.+.... .....+.+ -....+..+ .+..++|||+.|||.++.++.++|.
T Consensus 224 ~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~--~~~~~~~~-~~~~~~~~i---k~~~~iPVi~~GgI~s~e~a~~~L~ 297 (340)
T 3gr7_A 224 DGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVP--ARMNVYPG-YQVPFAELI---RREADIPTGAVGLITSGWQAEEILQ 297 (340)
T ss_dssp TSCCGGGHHHHHHHHHHTTCCEEEEECCCSSC--CCCCCCTT-TTHHHHHHH---HHHTTCCEEEESSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCccC--CCCCCCcc-ccHHHHHHH---HHHcCCcEEeeCCCCCHHHHHHHHH
Confidence 13456888999999999986432111 00000111 122333333 3345799999999999999999999
Q ss_pred hC-CCEEEecccccC
Q 010640 372 LG-ASTVMMGSFLAG 385 (505)
Q Consensus 372 lG-A~~V~~G~~f~~ 385 (505)
.| ||+|++|+.|+.
T Consensus 298 ~G~aD~V~iGR~~la 312 (340)
T 3gr7_A 298 NGRADLVFLGRELLR 312 (340)
T ss_dssp TTSCSEEEECHHHHH
T ss_pred CCCeeEEEecHHHHh
Confidence 99 999999999875
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.45 E-value=7.5e-08 Score=94.57 Aligned_cols=129 Identities=19% Similarity=0.200 Sum_probs=85.5
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee-----
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC----- 324 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~----- 324 (505)
.+.++.+.++|+|++ +.+.+.. ..+.++.+++.+.+.++++ ++.+.+++..+.++|+|+|.+.+.+|+..
T Consensus 90 ide~qil~aaGAD~I--d~s~~~~--~~~li~~i~~~~~g~~vvv-~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v 164 (297)
T 4adt_A 90 FVEAQILEELKVDML--DESEVLT--MADEYNHINKHKFKTPFVC-GCTNLGEALRRISEGASMIRTKGEAGTGNIIEAI 164 (297)
T ss_dssp HHHHHHHHHTTCSEE--EEETTSC--CSCSSCCCCGGGCSSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHH
T ss_pred HHHHHHHHHcCCCEE--EcCCCCC--HHHHHHHHHhcCCCCeEEE-EeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHH
Confidence 567777889999999 4333311 1123333444333678877 68999999999999999998863322110
Q ss_pred -ec---------------cccccc---CcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 325 -TT---------------QEVCAV---GRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 325 -~~---------------~~~~g~---g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+. +.+..+ ..+.+..+..+++ ..++|++ +.|||.++.|+.+++.+||++|++|+.|
T Consensus 165 ~h~~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~---~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai 241 (297)
T 4adt_A 165 KHIRTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRK---LKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGI 241 (297)
T ss_dssp HHHHHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHH---HTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHH
T ss_pred HHHHHhhhhhhhhccccccccccccccCCCCHHHHHHHHH---hcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHH
Confidence 00 000000 0233444444433 3567887 9999999999999999999999999998
Q ss_pred cCC
Q 010640 384 AGS 386 (505)
Q Consensus 384 ~~~ 386 (505)
..+
T Consensus 242 ~~a 244 (297)
T 4adt_A 242 FES 244 (297)
T ss_dssp HTS
T ss_pred HcC
Confidence 754
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.6e-06 Score=80.51 Aligned_cols=135 Identities=21% Similarity=0.301 Sum_probs=94.7
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCC---CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC--
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQG---NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS-- 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g---~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~-- 320 (505)
++..+.++.+.+.|++.++++...+ ......+.++.+++.+ ++|+++ +.+.+.+.++.+.++|+|++.++...
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~ 111 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVR 111 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 3577888999999999988764222 1224577888888886 788876 67889999999999999999875210
Q ss_pred ------------c--ce---------------e---------ecc-c-------------------ccccC-cChHHHHH
Q 010640 321 ------------G--SI---------------C---------TTQ-E-------------------VCAVG-RGQATAVY 341 (505)
Q Consensus 321 ------------g--~~---------------~---------~~~-~-------------------~~g~g-~p~~~~l~ 341 (505)
| .+ . .+. . ..+.+ .+..+.+.
T Consensus 112 ~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~ 191 (253)
T 1h5y_A 112 NPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIR 191 (253)
T ss_dssp CTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHH
T ss_pred CcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHH
Confidence 0 00 0 000 0 00110 11233444
Q ss_pred HHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 342 KVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 342 ~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+++ ..++||+++|||.++.|+.+++.+||++|++|+.|..
T Consensus 192 ~l~~---~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 192 RVAD---SVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp HHHH---HCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred HHHH---hcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 4433 3479999999999999999999999999999999864
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.3e-07 Score=70.12 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=44.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
+++++.+++++.+|+++|.++++..+||+|+|+++||||..|+++...
T Consensus 1 k~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~~~lvGIvT~~Di~~~~~ 48 (70)
T 3ghd_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEGDEILGVVTERDILDKVV 48 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHH
Confidence 367899999999999999999999999999999999999999987643
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=87.96 Aligned_cols=133 Identities=25% Similarity=0.266 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEccc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGGNV----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g~V----- 297 (505)
++.+.++.+.++|.|.|.+|.++|+ + +...+.++.+|+.++ +.||.++--
T Consensus 153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~ 232 (349)
T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG 232 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 3666677888899999999987631 1 124778888888874 567776311
Q ss_pred ---CCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 298 ---VTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 298 ---~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.+.+ .++.|.++|+|+|.++.|+..... ....+.+ .....+..++ +..++|||+.|||.++.++.+++
T Consensus 233 ~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~-~~~~~~~-~~~~~~~~ir---~~~~iPVi~~Ggi~t~e~a~~~l 307 (349)
T 3hgj_A 233 EGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRV-RIPLAPG-FQVPFADAVR---KRVGLRTGAVGLITTPEQAETLL 307 (349)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSS-CCCCCTT-TTHHHHHHHH---HHHCCEEEECSSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCccc-ccCCCcc-ccHHHHHHHH---HHcCceEEEECCCCCHHHHHHHH
Confidence 1333 477888999999998743211110 0000001 1223333333 33579999999999999999999
Q ss_pred HhC-CCEEEecccccC
Q 010640 371 VLG-ASTVMMGSFLAG 385 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~ 385 (505)
..| ||+|++|+.|+.
T Consensus 308 ~~G~aD~V~iGR~~la 323 (349)
T 3hgj_A 308 QAGSADLVLLGRVLLR 323 (349)
T ss_dssp HTTSCSEEEESTHHHH
T ss_pred HCCCceEEEecHHHHh
Confidence 999 999999999875
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=8.8e-07 Score=94.35 Aligned_cols=188 Identities=13% Similarity=0.175 Sum_probs=113.6
Q ss_pred cCCcccc--CCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCce-
Q 010640 104 RRVPIFS--SSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNV- 177 (505)
Q Consensus 104 ~~~~~~~--~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~- 177 (505)
..++|.. ++ +++++++++.++.++|.+ ++ +||+|+ +|+++|+||.+|+...........+ +.. .+.
T Consensus 175 v~~vm~~~~~~--~tv~~~~~l~ea~~~m~~~~~~~lpVVd~---~g~lvGiIt~~Dll~~~~~~~~~~~-~~~--rl~v 246 (514)
T 1jcn_A 175 LSEVMTPRIEL--VVAPAGVTLKEANEILQRSKKGKLPIVND---CDELVAIIARTDLKKNRDYPLASKD-SQK--QLLC 246 (514)
T ss_dssp ------CCBCC--CCEETTCCSTTTTTHHHHHTCSCCCEESS---SSCCC----CCCCSSCCCCTTCCBC-TTS--CBCC
T ss_pred HHHHhCCCCCC--eEECCCCCHHHHHHHHHHcCCCcccEECC---CCeEEEEEEHHHHHHHhhCcchhcc-cCC--ceee
Confidence 4456766 77 899999999999999998 76 999998 8999999999999633221111222 222 221
Q ss_pred --EecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEE-eecCCccHHHH
Q 010640 178 --SVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGA-AIGTRESDKER 252 (505)
Q Consensus 178 --~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a-~i~~~~~~~e~ 252 (505)
.+.......+.++.+.+.+.+.+-+ +- |.... ..++++.... .-+.+.+.+ .+. ..+.
T Consensus 247 ga~vG~~~~~~~~a~~~~~aG~d~v~i-~~~~G~~~~---~~~~i~~i~~---------~~~~~pvi~~~v~----t~~~ 309 (514)
T 1jcn_A 247 GAAVGTREDDKYRLDLLTQAGVDVIVL-DSSQGNSVY---QIAMVHYIKQ---------KYPHLQVIGGNVV----TAAQ 309 (514)
T ss_dssp EEEECSSTTHHHHHHHHHHTTCSEEEE-CCSCCCSHH---HHHHHHHHHH---------HCTTCEEEEEEEC----SHHH
T ss_pred eeEecCchhhHHHHHHHHHcCCCEEEe-eccCCcchh---HHHHHHHHHH---------hCCCCceEecccc----hHHH
Confidence 1233344667777788888875443 22 32100 0122332211 101233433 332 3467
Q ss_pred HHHHHHcCccEEEEeCCCC------------C-chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 253 LEHLVKAGVNVVVLDSSQG------------N-SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g------------~-~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++.+.++|+|++.+....| . ....+..+..+++.+ ++||++ |++.+.+++.++..+|||++.++
T Consensus 310 a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GAd~V~iG 387 (514)
T 1jcn_A 310 AKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGASTVMMG 387 (514)
T ss_dssp HHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCCCeeeEC
Confidence 8889999999998832111 1 123456666666665 789987 89999999999999999999886
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-06 Score=81.56 Aligned_cols=177 Identities=14% Similarity=0.101 Sum_probs=113.3
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
.+ .+..+..+.+.+.|...+-|+++ +.+-|-. .++-..... -.+++-...... ....+..+.+
T Consensus 63 ~~-~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~--~~l~~i~~~-----------v~lPvl~kdfI~--d~~qi~~a~~ 126 (254)
T 1vc4_A 63 RE-VDPVEAALAYARGGARAVSVLTEPHRFGGSL--LDLKRVREA-----------VDLPLLRKDFVV--DPFMLEEARA 126 (254)
T ss_dssp CS-CCHHHHHHHHHHTTCSEEEEECCCSSSCCCH--HHHHHHHHH-----------CCSCEEEESCCC--SHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEecchhhhccCH--HHHHHHHHh-----------cCCCEEECCcCC--CHHHHHHHHH
Confidence 44 57788889999999999999987 7666632 333222211 012222222112 2234666888
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
.|+|.+.+....-. ....+++...++. +..+++ .+.+.+++..+.++|+|.|-+.+ +.....+ +.+.
T Consensus 127 ~GAD~VlL~~~~l~-~~l~~l~~~a~~l--Gl~~lv-ev~~~~E~~~a~~~gad~IGvn~--------~~l~~~~-~dl~ 193 (254)
T 1vc4_A 127 FGASAALLIVALLG-ELTGAYLEEARRL--GLEALV-EVHTERELEIALEAGAEVLGINN--------RDLATLH-INLE 193 (254)
T ss_dssp TTCSEEEEEHHHHG-GGHHHHHHHHHHH--TCEEEE-EECSHHHHHHHHHHTCSEEEEES--------BCTTTCC-BCTT
T ss_pred cCCCEEEECccchH-HHHHHHHHHHHHC--CCeEEE-EECCHHHHHHHHHcCCCEEEEcc--------ccCcCCC-CCHH
Confidence 99999988543211 2344444444444 666665 67889999999999999885532 1122222 2233
Q ss_pred HHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 339 AVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 339 ~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.+.++.+..... ++|+|+.|||.++.|+.++.. ||++|.+|+.|...
T Consensus 194 ~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~ 242 (254)
T 1vc4_A 194 TAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRA 242 (254)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTS
T ss_pred HHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCC
Confidence 334444443321 689999999999999999999 99999999998643
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.1e-06 Score=81.35 Aligned_cols=178 Identities=18% Similarity=0.173 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+..+.++.+.+.+.+.+++.|- ....+.-..-++++.... ..+..++++..+. ..+.++.+++.|
T Consensus 30 ~~d~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~--------~~~iPvi~~Ggi~----~~~~~~~~~~~G 97 (252)
T 1ka9_F 30 AGDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAE--------RVFIPLTVGGGVR----SLEDARKLLLSG 97 (252)
T ss_dssp TTCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHT--------TCCSCEEEESSCC----SHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCEEEEEcCCccccCccccHHHHHHHHH--------hCCCCEEEECCcC----CHHHHHHHHHcC
Confidence 346778888999999999999974 211111111112222211 1122333433442 346788888899
Q ss_pred ccEEEEeCCC-CCchhHHHHHHHHHHhCC-C-ceEEEcc-------------------cCCHHHHHHHHHcCCCEEEEcc
Q 010640 261 VNVVVLDSSQ-GNSSFQIEMIKYAKKTYP-E-LDVIGGN-------------------VVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 261 ad~I~i~~~~-g~~~~~~~~i~~l~~~~~-~-~~Vi~g~-------------------V~t~e~a~~l~~aGad~I~v~~ 318 (505)
+|.+.+.... ..+ +.++.+.+.+. + +.+.+.. ..+.+.++.+.+.|++.+.+..
T Consensus 98 ad~V~lg~~~l~~p----~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~ 173 (252)
T 1ka9_F 98 ADKVSVNSAAVRRP----ELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTS 173 (252)
T ss_dssp CSEEEECHHHHHCT----HHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEE
T ss_pred CCEEEEChHHHhCc----HHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEec
Confidence 9999884321 111 22333434331 1 2222210 1236778999999999886521
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.++.....| +.++.+.++++ ..++|||+.|||.++.|+.+++..||++|++|+.|..
T Consensus 174 ------~~~~g~~~g-~~~~~i~~l~~---~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~ 230 (252)
T 1ka9_F 174 ------MDRDGTKEG-YDLRLTRMVAE---AVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF 230 (252)
T ss_dssp ------TTTTTTCSC-CCHHHHHHHHH---HCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred ------ccCCCCcCC-CCHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc
Confidence 011111112 23455544443 4579999999999999999999999999999999864
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=81.45 Aligned_cols=118 Identities=19% Similarity=0.191 Sum_probs=77.4
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~ 332 (505)
++.+.+.|+|.+.++.... ..+ .+++.+++..+.+ ++.+.+++..+.+.|+|+|.++.. ..+....|.
T Consensus 81 ~~~a~~~gad~v~l~~~~~----~~~---~~~~~~~~~~ig~-sv~t~~~~~~a~~~gaD~i~~~~~----f~~~~~~g~ 148 (221)
T 1yad_A 81 VDIALFSTIHRVQLPSGSF----SPK---QIRARFPHLHIGR-SVHSLEEAVQAEKEDADYVLFGHV----FETDCKKGL 148 (221)
T ss_dssp HHHHHTTTCCEEEECTTSC----CHH---HHHHHCTTCEEEE-EECSHHHHHHHHHTTCSEEEEECC----C--------
T ss_pred HHHHHHcCCCEEEeCCCcc----CHH---HHHHHCCCCEEEE-EcCCHHHHHHHHhCCCCEEEECCc----cccCCCCCC
Confidence 4667789999998854321 123 3344443455544 678999999999999999987531 111111110
Q ss_pred CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 333 GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 333 g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
....+..+ .+.++..++||+++||| ++.++.+++.+||++|.+|+.|..+
T Consensus 149 ~~~~~~~l---~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 149 EGRGVSLL---SDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFSS 198 (221)
T ss_dssp --CHHHHH---HHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHTS
T ss_pred CCCCHHHH---HHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhCC
Confidence 01122333 33333457999999999 9999999999999999999998654
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=8.3e-07 Score=93.87 Aligned_cols=187 Identities=18% Similarity=0.190 Sum_probs=70.2
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEec
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~ 180 (505)
..++|..++ +++++++++.+++++|.+ ++ +||+|+ +++++|+||.+|+...........+.+...--...+.
T Consensus 152 v~~im~~~~--~~v~~~~~l~eal~~m~~~~~~~lpVVde---~g~lvGiiT~~Dil~~~~~~~~~~~~~g~~~v~~~~~ 226 (486)
T 2cu0_A 152 VKELMTKEV--ITVPESIEVEEALKIMIENRIDRLPVVDE---RGKLVGLITMSDLVARKKYKNAVRDENGELLVAAAVS 226 (486)
T ss_dssp ------------------------------------------------------------CCTTCCBCTTSCBCCEEEEC
T ss_pred HHHHccCCC--eEECCcCcHHHHHHHHHHcCCCEEEEEec---CCeEEEEEEHHHHHHhhhccccccccCCceeecceec
Confidence 345666677 899999999999999999 66 999998 8999999999999743321111222111100001233
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
. .. .+.+.++.+.+++.+ |++. |...++++.-..++... ....+.-.++. .+.+..+.
T Consensus 227 ~-~~-~~~a~~l~~~gvd~l-vvdta~G~~~~~L~~I~~l~~~~------------~vpvi~k~v~~----~~~a~~l~- 286 (486)
T 2cu0_A 227 P-FD-IKRAIELDKAGVDVI-VVDTAHAHNLKAIKSMKEMRQKV------------DADFIVGNIAN----PKAVDDLT- 286 (486)
T ss_dssp T-TC-HHHHHHHHHTTCSEE-EEECSCCCCHHHHHHHHHHHHTC------------CSEEEEEEECC----HHHHTTCT-
T ss_pred h-hh-HHHHHHHHHhcCCce-EEEecCCcEeehhhHHHHHHHHh------------CCccccCCcCC----HHHHHHhh-
Confidence 3 33 566778888898865 6664 56555544322222210 01123333432 23344444
Q ss_pred cCccEEEEeCCC------------CCc-hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 259 AGVNVVVLDSSQ------------GNS-SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 259 aGad~I~i~~~~------------g~~-~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|+|.+.+.... |.+ ...+..+..+.+.+ ++|||+ |++.+..++.+++.+|||++.++
T Consensus 287 -G~d~v~vg~g~g~~~~~r~~~~~g~~~~~~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~v~~g 357 (486)
T 2cu0_A 287 -FADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADAVMLG 357 (486)
T ss_dssp -TSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred -CCCeEEEeeeeccceeeeEEeecCcchHHHHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCceeeC
Confidence 99999883211 111 12233344444444 789987 78899999988999999999886
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.2e-06 Score=81.94 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-C--eeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-G--ERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g--~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
+..+.++.+.+.+.+.+-+.|- . .-.|. .-++++.... .....++++..+.+ .+.++.+.+.|
T Consensus 31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~--~~~~i~~i~~--------~~~iPvi~~ggi~~----~~~i~~~~~~G 96 (266)
T 2w6r_A 31 LLRDWVVEVEKRGAGEILLTSIDRDGTKSGY--DTEMIRFVRP--------LTTLPIIASGGAGK----MEHFLEAFLAG 96 (266)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTSSCSSCC--CHHHHHHHGG--------GCCSCEEEESCCCS----THHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccCCCcc--cHHHHHHHHH--------hcCCCEEEECCCCC----HHHHHHHHHcC
Confidence 4677888899999999999874 2 22221 1233333211 11223444434432 24566777889
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEEEc-cc--------------------CCHHHHHHHHHcCCCEEEEc
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVIGG-NV--------------------VTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi~g-~V--------------------~t~e~a~~l~~aGad~I~v~ 317 (505)
+|.+.+....-......+.++.+.+.+. .-.++++ .+ ...+.++.+.++|++.|.+.
T Consensus 97 ad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t 176 (266)
T 2w6r_A 97 ADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLT 176 (266)
T ss_dssp CSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred CcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEE
Confidence 9999885432200001123333322221 1111111 11 12466788999999999763
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
. .++.....| +.+..+. +.++..++|||+.|||.++.|+.+++.+||++|++|+.|...
T Consensus 177 ~------~~~~g~~~g-~~~~~i~---~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~ 235 (266)
T 2w6r_A 177 S------IDRDGTKSG-YDTEMIR---FVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 235 (266)
T ss_dssp E------TTTTTTCSC-CCHHHHH---HHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred e------ecCCCCcCC-CCHHHHH---HHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence 1 011111112 2344443 344456899999999999999999999999999999998643
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.38 E-value=6.8e-06 Score=78.83 Aligned_cols=135 Identities=20% Similarity=0.139 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCC------CCC---------------chhHHHHHHHHHHhCCCceEEEcccCC-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSS------QGN---------------SSFQIEMIKYAKKTYPELDVIGGNVVT------- 299 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~------~g~---------------~~~~~~~i~~l~~~~~~~~Vi~g~V~t------- 299 (505)
...+.++.+.+. +|.++++.+ .|. .....+.++.+++.+ ++||.+....+
T Consensus 20 ~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~ 97 (248)
T 1geq_A 20 STLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHS-STPIVLMTYYNPIYRAGV 97 (248)
T ss_dssp HHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTC-CCCEEEEECHHHHHHHCH
T ss_pred HHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhC-CCCEEEEeccchhhhcCH
Confidence 567778888888 999999833 231 122367888888876 67887755333
Q ss_pred HHHHHHHHHcCCCEEEEccCCc--------------c-----eee-ccc------------------cccc-CcC---hH
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSG--------------S-----ICT-TQE------------------VCAV-GRG---QA 337 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g--------------~-----~~~-~~~------------------~~g~-g~p---~~ 337 (505)
.+.++.+.++|+|++.+..-+. . ... +.. ..|. |.. ..
T Consensus 98 ~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~ 177 (248)
T 1geq_A 98 RNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPK 177 (248)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------CCCH
T ss_pred HHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEECCccCCCCCCCCh
Confidence 4788899999999999863110 0 000 000 0110 110 02
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
..+..+.+..+..++||+++|||.++.++.+++.+||++|.+|+.+.
T Consensus 178 ~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~ 224 (248)
T 1geq_A 178 TAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV 224 (248)
T ss_dssp HHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred hHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 22333444444457999999999999999999999999999999885
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-05 Score=75.84 Aligned_cols=109 Identities=22% Similarity=0.253 Sum_probs=89.5
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.++.+++.|++++.+.... ....+.++.+++.++++.+.+|++.+.++++.+.++|+|++..+.
T Consensus 27 ~~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p~------- 96 (214)
T 1wbh_A 27 LEHAVPMAKALVAGGVRVLNVTLRT---ECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG------- 96 (214)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESCS---TTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS-------
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCC---hhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcCC-------
Confidence 4557889999999999999997543 234678888889988888889999999999999999999995431
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. . .++.+.++..++|+|. |+.|+.++.+|+.+|||.|.+
T Consensus 97 ---~------d----~~v~~~~~~~g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 97 ---L------T----EPLLKAATEGTIPLIP--GISTVSELMLGMDYGLKEFKF 135 (214)
T ss_dssp ---C------C----HHHHHHHHHSSSCEEE--EESSHHHHHHHHHTTCCEEEE
T ss_pred ---C------C----HHHHHHHHHhCCCEEE--ecCCHHHHHHHHHCCCCEEEE
Confidence 0 0 2445666678899999 799999999999999999988
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-05 Score=75.64 Aligned_cols=119 Identities=19% Similarity=0.191 Sum_probs=81.2
Q ss_pred HHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCCceEEEcc-----cCCH----HHHHHHHHcCCCEEEE
Q 010640 251 ERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPELDVIGGN-----VVTM----YQAQNLIEAGVDGLRV 316 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~~~Vi~g~-----V~t~----e~a~~l~~aGad~I~v 316 (505)
..++.+++.|+|.+.+.... +....+.+.++.+++..+ |+++|- -.+. +.++.+.++|+|+|..
T Consensus 74 ~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~--pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~t 151 (225)
T 1mzh_A 74 KEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP--SAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKT 151 (225)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT--TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc--CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 44567788999999864432 333456677888888763 444432 1243 3477888899999966
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.|.. .|..+...+..+++... .++||+++|||+++.|+.+.+.+||+.|++++.
T Consensus 152 stg~~----------~gga~~~~i~~v~~~v~-~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~ 206 (225)
T 1mzh_A 152 STGFA----------PRGTTLEEVRLIKSSAK-GRIKVKASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp CCSCS----------SSCCCHHHHHHHHHHHT-TSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred CCCCC----------CCCCCHHHHHHHHHHhC-CCCcEEEECCCCCHHHHHHHHHhCchHHHHccH
Confidence 53210 11234556666655432 269999999999999999999999998777754
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.3e-07 Score=79.81 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=55.1
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.++.++|+|+++++++.+++++.+|+++|.++++.++||+|+ |+++|+||..|+++...
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~ 74 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQM 74 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHH
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhh
Confidence 468899999889999999999999999999999999999999 99999999999987653
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-05 Score=75.57 Aligned_cols=123 Identities=24% Similarity=0.272 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCH-HHHHHHHHcCCCEEEEccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTM-YQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~-e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
...++.+.++|+|.+.++...+ .....+.++.+++. +.++++ -++.+. +.++.+.+.|+|+|.+..|.++
T Consensus 67 ~~~~~~~~~~Gad~v~v~~~~~-~~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~g~~g---- 139 (211)
T 3f4w_A 67 HFESQLLFDAGADYVTVLGVTD-VLTIQSCIRAAKEA--GKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQ---- 139 (211)
T ss_dssp HHHHHHHHHTTCSEEEEETTSC-HHHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHHTCCEEEEECCHHH----
T ss_pred HHHHHHHHhcCCCEEEEeCCCC-hhHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcCCCcc----
Confidence 3448889999999999976532 12335566666666 677664 234454 6689999999999876422110
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.. .+...+..+..+++.. .++|++++|||. +.++.+++.+||++|.+|+.+..
T Consensus 140 ~~---~~~~~~~~i~~l~~~~--~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~ 192 (211)
T 3f4w_A 140 QA---AGRKPIDDLITMLKVR--RKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITH 192 (211)
T ss_dssp HH---TTCCSHHHHHHHHHHC--SSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHT
T ss_pred cc---cCCCCHHHHHHHHHHc--CCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcC
Confidence 00 1112344454444432 269999999995 99999999999999999999864
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-06 Score=80.83 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=61.9
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHH
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIV 367 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~ 367 (505)
+..++.-...++..++.+.++|+++|.--... .-+|.|+.+...+..+.+. ..+ +|||.+|||.++.|++
T Consensus 124 Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~p-------IGsG~Gi~~~~~L~~i~~~--~~~~vPVI~~GGI~tpsDAa 194 (268)
T 2htm_A 124 DFLVLPYMGPDLVLAKRLAALGTATVMPLAAP-------IGSGWGVRTRALLELFARE--KASLPPVVVDAGLGLPSHAA 194 (268)
T ss_dssp TCEECCEECSCHHHHHHHHHHTCSCBEEBSSS-------TTTCCCSTTHHHHHHHHHT--TTTSSCBEEESCCCSHHHHH
T ss_pred CCEEeeccCCCHHHHHHHHhcCCCEEEecCcc-------CcCCcccCCHHHHHHHHHh--cCCCCeEEEeCCCCCHHHHH
Confidence 33444223578899999999999999552110 0012344444444444331 346 9999999999999999
Q ss_pred HHHHhCCCEEEecccccC
Q 010640 368 KALVLGASTVMMGSFLAG 385 (505)
Q Consensus 368 kal~lGA~~V~~G~~f~~ 385 (505)
+|+.+||++|++||.+..
T Consensus 195 ~AmeLGAdgVlVgSAI~~ 212 (268)
T 2htm_A 195 EVMELGLDAVLVNTAIAE 212 (268)
T ss_dssp HHHHTTCCEEEESHHHHT
T ss_pred HHHHcCCCEEEEChHHhC
Confidence 999999999999999874
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=75.78 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=89.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.++.+++.|++++.+.... ....+.++.+++.+|++.+.+|++.+.+.++.+.++|+|++..+.
T Consensus 37 ~~~~~~~~~al~~gGv~~iel~~k~---~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p~------- 106 (225)
T 1mxs_A 37 EEDILPLADALAAGGIRTLEVTLRS---QHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPG------- 106 (225)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESSS---THHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSS-------
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCC---ccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeCC-------
Confidence 4457889999999999999997542 245677888888988889999999999999999999999994321
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. . .++.++++..++|+|. |+.|+.++.+|+.+|||.|.+
T Consensus 107 ---~------d----~~v~~~~~~~g~~~i~--G~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 107 ---I------T----EDILEAGVDSEIPLLP--GISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp ---C------C----HHHHHHHHHCSSCEEC--EECSHHHHHHHHTTTCCEEEE
T ss_pred ---C------C----HHHHHHHHHhCCCEEE--eeCCHHHHHHHHHCCCCEEEE
Confidence 0 0 1345666668899998 799999999999999999988
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-06 Score=74.01 Aligned_cols=106 Identities=16% Similarity=0.107 Sum_probs=74.8
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceE
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMV 239 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v 239 (505)
...++.++|+++.+++++++++++.++++.|.+++...+||+|+ |+++|+||..|+++....... .+..+.-.. .+
T Consensus 21 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~-~~v~~~m~~-~~ 98 (148)
T 3lv9_A 21 EEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENK-IELEEILRD-II 98 (148)
T ss_dssp GTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSC-CCGGGTCBC-CE
T ss_pred CCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCC-ccHHHhcCC-Ce
Confidence 45689999998778999999999999999999999999999987 799999999999987432100 001111111 12
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEeCCCC
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLDSSQG 271 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g 271 (505)
. +.......+.++.+.+.+...+.+....|
T Consensus 99 ~--v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g 128 (148)
T 3lv9_A 99 Y--ISENLTIDKALERIRKEKLQLAIVVDEYG 128 (148)
T ss_dssp E--EETTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred E--ECCCCCHHHHHHHHHhcCCeEEEEEeCCC
Confidence 1 22233466777777777877765543333
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.2e-06 Score=85.04 Aligned_cols=133 Identities=19% Similarity=0.179 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEccc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGGNV----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g~V----- 297 (505)
++.+.++.+.++|.|.|.+|.++|+ + +...+.++.+++.++ +.||.++--
T Consensus 159 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~ 238 (363)
T 3l5l_A 159 DFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYD 238 (363)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcC
Confidence 3566677788899999999976531 1 124678888888874 567766310
Q ss_pred ----CC----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Q 010640 298 ----VT----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 298 ----~t----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ka 369 (505)
.+ .+.++.|.++|+|+|.++.+........ ..+-+ .....+..+++ ..++|||+.|||.++.++.++
T Consensus 239 ~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~-~~~~~-~~~~~~~~ir~---~~~iPVi~~GgI~s~e~a~~~ 313 (363)
T 3l5l_A 239 GRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNI-PWGPA-FMGPIAERVRR---EAKLPVTSAWGFGTPQLAEAA 313 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCC-CCCTT-TTHHHHHHHHH---HHTCCEEECSSTTSHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEecCcccccccc-CCCcc-hhHHHHHHHHH---HcCCcEEEeCCCCCHHHHHHH
Confidence 12 2346788899999999874321100000 00101 12233333333 357999999999999999999
Q ss_pred HHhC-CCEEEecccccC
Q 010640 370 LVLG-ASTVMMGSFLAG 385 (505)
Q Consensus 370 l~lG-A~~V~~G~~f~~ 385 (505)
+..| ||+|++|+.|+.
T Consensus 314 l~~G~aD~V~iGR~~la 330 (363)
T 3l5l_A 314 LQANQLDLVSVGRAHLA 330 (363)
T ss_dssp HHTTSCSEEECCHHHHH
T ss_pred HHCCCccEEEecHHHHh
Confidence 9999 999999999875
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=77.23 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=89.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc---------------------hhHHHHHHHHHHhCCCceEEE---cc-c---C
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS---------------------SFQIEMIKYAKKTYPELDVIG---GN-V---V 298 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~---------------------~~~~~~i~~l~~~~~~~~Vi~---g~-V---~ 298 (505)
+...+.++.+.++|+|+++++.+...+ ....+.++.+|+.++++|++. -+ + .
T Consensus 31 ~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g 110 (268)
T 1qop_A 31 EQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNG 110 (268)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhh
Confidence 346678888999999999998855322 123467888888844788754 12 1 1
Q ss_pred CHHHHHHHHHcCCCEEEEccCC-cc---------------e---ee-cc---------------------cccccCcC--
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGS-GS---------------I---CT-TQ---------------------EVCAVGRG-- 335 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~-g~---------------~---~~-~~---------------------~~~g~g~p-- 335 (505)
....++.+.++|+|++.+.--+ .. + .. +. ..+|...+
T Consensus 111 ~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~ 190 (268)
T 1qop_A 111 IDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGA 190 (268)
T ss_dssp HHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC-
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCC
Confidence 2567788999999988764211 00 0 00 00 01111111
Q ss_pred --hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 336 --QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 336 --~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
....+..+++ ..++||+.+|||.++.++.+++..|||+|.+||.|.
T Consensus 191 ~~~~~~i~~lr~---~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~ 238 (268)
T 1qop_A 191 LPLHHLIEKLKE---YHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIV 238 (268)
T ss_dssp -CCHHHHHHHHH---TTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred chHHHHHHHHHh---ccCCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHh
Confidence 2334444433 347999999999999999999999999999999985
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-06 Score=72.01 Aligned_cols=100 Identities=13% Similarity=0.036 Sum_probs=71.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVG 240 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~ 240 (505)
+.+++++|++..+++++++++++.+++++|.+++..++||+|+ |+++|+||..|+++....... ...+.-.. .+
T Consensus 4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~--~v~~~m~~-~~- 79 (129)
T 3jtf_A 4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPAL--DIRSLVRP-AV- 79 (129)
T ss_dssp CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCTTS--CGGGGCBC-CC-
T ss_pred CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccCCc--CHHHHhCC-Ce-
Confidence 4578999995448899999999999999999999999999986 799999999999987642211 01111011 11
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEe
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
.+.......+.++.+.+.+...+.+-
T Consensus 80 -~v~~~~~l~~~~~~m~~~~~~~~pVv 105 (129)
T 3jtf_A 80 -FIPEVKRLNVLLREFRASRNHLAIVI 105 (129)
T ss_dssp -EEETTCBHHHHHHHHHTSSCCEEEEE
T ss_pred -EeCCCCcHHHHHHHHHhcCCeEEEEE
Confidence 12223346667777777777776553
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.2e-07 Score=85.10 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH-hCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCc--ceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK-TYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSG--SICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~-~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g--~~~~~ 326 (505)
...++.+.+.|+|+| |-+...+. .+.+..+.+ .| ++|+++ ++.+.++|...++.|++.|..-..+| .+.-.
T Consensus 80 ~~EAqilea~GaD~I--Desevltp--ad~~~~I~k~~f-~vpfv~-~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~a 153 (291)
T 3o07_A 80 FVEAQIIEALEVDYI--DESEVLTP--ADWTHHIEKDKF-KVPFVC-GAKDLGEALRRINEGAAMIRTKGEAGTGDVSEA 153 (291)
T ss_dssp HHHHHHHHHTTCSEE--EEETTSCC--SCSSCCCCGGGC-SSCEEE-EESSHHHHHHHHHHTCSEEEECCCTTSCCTHHH
T ss_pred HHHHHHHHHcCCCEE--ecccCCCH--HHHHHHhhhhcC-CCcEEe-eCCCHHHHHHHHHCCCCEEEecCcCCCccHHHH
Confidence 567788888999998 54433211 112222223 33 788877 78999999999999999997632222 11000
Q ss_pred -----------cccccc------------CcChHHHHHHHHHHHhhcCCcE--EecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 327 -----------QEVCAV------------GRGQATAVYKVSSIAAQSGVPV--IADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 327 -----------~~~~g~------------g~p~~~~l~~v~~~~~~~~ipv--Ia~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
+.+.+. -.+....+.++.+ ..++|| |+.|||.|+.|+.+++.+|||+|++|+
T Consensus 154 v~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike---~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGr 230 (291)
T 3o07_A 154 VKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLE---KGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGS 230 (291)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHH---HTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHH---ccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEch
Confidence 001111 0133444444433 356888 568999999999999999999999999
Q ss_pred cccC
Q 010640 382 FLAG 385 (505)
Q Consensus 382 ~f~~ 385 (505)
.+..
T Consensus 231 AI~~ 234 (291)
T 3o07_A 231 GIFK 234 (291)
T ss_dssp GGGG
T ss_pred HHhC
Confidence 8764
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=78.50 Aligned_cols=126 Identities=20% Similarity=0.215 Sum_probs=79.5
Q ss_pred HHHHHHHHc-CccEEEEeCCCCC---chhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 251 ERLEHLVKA-GVNVVVLDSSQGN---SSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 251 e~~~~liea-Gad~I~i~~~~g~---~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
..++.+.++ +.+++.++..... .....+.++..++.+ ++..++.-.+.+.+.++.+.+.|+|+| ++.++- +..
T Consensus 83 ~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v-~~~~~~-~Gt 160 (264)
T 1xm3_A 83 RIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAI-MPGASP-IGS 160 (264)
T ss_dssp HHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCB-EECSSS-TTC
T ss_pred HHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEE-EECCcc-cCC
Confidence 345555555 5667666542211 122345555555542 234444334567889999999999998 331110 000
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
. .+......+..+++ ..++||++.|||.++.|+.+++.+|||+|.+|+.|..+
T Consensus 161 ~-----~~~~~~~~l~~i~~---~~~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a 213 (264)
T 1xm3_A 161 G-----QGILNPLNLSFIIE---QAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA 213 (264)
T ss_dssp C-----CCCSCHHHHHHHHH---HCSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred C-----CCCCCHHHHHHHHh---cCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence 0 12223445555544 35799999999999999999999999999999998754
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.2e-06 Score=86.49 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEcc--CCccee--e
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM--GSGSIC--T 325 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~--g~g~~~--~ 325 (505)
.+.++.+.++|+|.+..+..... .+.++.+++...++++++ .+.+++.+..+.++|+|+|.+-. +.|... .
T Consensus 90 ~~~~~~~~~aGad~v~~~~~~~~----~~~~~~~~~~~~~i~l~~-~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~ 164 (297)
T 2zbt_A 90 FVEAMILEAIGVDFIDESEVLTP----ADEEHHIDKWKFKVPFVC-GARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAV 164 (297)
T ss_dssp HHHHHHHHHTTCSEEEEETTSCC----SCSSCCCCGGGCSSCEEE-EESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHH
T ss_pred HHHHHHHHHCCCCEEeeeCCCCh----HHHHHHHHHhCCCceEEe-ecCCHHHHHHHHHcCCCEEEEcccccCcchHHHH
Confidence 57788888999999933221111 112222333223677765 47789999999999999986631 111100 0
Q ss_pred cc---------ccccc-----------CcChHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 326 TQ---------EVCAV-----------GRGQATAVYKVSSIAAQSGVPVI--ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 326 ~~---------~~~g~-----------g~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+. ...++ ..+.+..+..++ +..++|++ ++|||.++.|+.+++.+||++|++|+.+
T Consensus 165 ~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~---~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai 241 (297)
T 2zbt_A 165 RHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVH---DHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGI 241 (297)
T ss_dssp HHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHH---HHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGG
T ss_pred hhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHH---HhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHH
Confidence 00 00000 112233444443 33578988 9999999999999999999999999988
Q ss_pred cC
Q 010640 384 AG 385 (505)
Q Consensus 384 ~~ 385 (505)
..
T Consensus 242 ~~ 243 (297)
T 2zbt_A 242 FK 243 (297)
T ss_dssp GG
T ss_pred hC
Confidence 53
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=75.59 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc---------------------hhHHHHHHHHHHhCCCceEEEcccC-------
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS---------------------SFQIEMIKYAKKTYPELDVIGGNVV------- 298 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~---------------------~~~~~~i~~l~~~~~~~~Vi~g~V~------- 298 (505)
+...+.++.|.++|+|++++..++..+ ....+.++.+|+..+++|++.=...
T Consensus 32 ~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g 111 (267)
T 3vnd_A 32 ELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG 111 (267)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh
Confidence 457788899999999999998543211 2447888888887447887662221
Q ss_pred CHHHHHHHHHcCCCEEEEc-cC--------------------------------------Ccceeeccc--ccccCcChH
Q 010640 299 TMYQAQNLIEAGVDGLRVG-MG--------------------------------------SGSICTTQE--VCAVGRGQA 337 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~-~g--------------------------------------~g~~~~~~~--~~g~g~p~~ 337 (505)
...-++.+.++|+|++.+. .. .|-+..-.. .+|......
T Consensus 112 ~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~ 191 (267)
T 3vnd_A 112 IDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAG 191 (267)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC-------
T ss_pred HHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCc
Confidence 2445788999999998774 20 000000000 111110001
Q ss_pred H-HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 338 T-AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 338 ~-~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. ....+.+..+..++||+..|||.+++++.+++..|||+|.+||.|.
T Consensus 192 ~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv 239 (267)
T 3vnd_A 192 EPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVV 239 (267)
T ss_dssp -CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 1 1122233333357999999999999999999999999999999985
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-06 Score=71.36 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=70.7
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCC-CCcceEEEe
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGP-DGKWMVGAA 242 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~-~~~l~v~a~ 242 (505)
++.++|++ +++++++++++.++++.|.+++...+||+|+ |+++|+||..|+++....... +..+. .... + .
T Consensus 2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~--~v~~~~~~~~-~--~ 74 (122)
T 3kpb_A 2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKK--TIEEIMTRNV-I--T 74 (122)
T ss_dssp BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTCC--BGGGTSBSSC-C--C
T ss_pred chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhccc--CHHHHhcCCC-e--E
Confidence 57899998 9999999999999999999999999999998 999999999999987543211 01111 0111 1 1
Q ss_pred ecCCccHHHHHHHHHHcCccEEEEeCC
Q 010640 243 IGTRESDKERLEHLVKAGVNVVVLDSS 269 (505)
Q Consensus 243 i~~~~~~~e~~~~lieaGad~I~i~~~ 269 (505)
+.......+.++.+.+.+...+.+...
T Consensus 75 v~~~~~l~~~~~~~~~~~~~~l~Vvd~ 101 (122)
T 3kpb_A 75 AHEDEPVDHVAIKMSKYNISGVPVVDD 101 (122)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred ECCCCCHHHHHHHHHHhCCCeEEEECC
Confidence 122334666777777778777665433
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=80.53 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCC-CceEEEccc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYP-ELDVIGGNV----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g~V----- 297 (505)
++.+.++.+.++|.|.|.|+.++|+ .....+.++.+++.++ +.||.++--
T Consensus 144 ~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~ 223 (343)
T 3kru_A 144 AFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYM 223 (343)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSS
T ss_pred HHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhh
Confidence 3566677788899999999954321 1235788888898874 567777311
Q ss_pred ---CC----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 298 ---VT----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 298 ---~t----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.+ .+.++.|.++ +|+|.++.|...........++ ....+..++ +..++|||+.|||.++.++.+++
T Consensus 224 ~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~---~~~~~~~ir---~~~~iPVi~~Ggi~t~e~Ae~~l 296 (343)
T 3kru_A 224 EGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGY---QVKYAETIK---KRCNIKTSAVGLITTQELAEEIL 296 (343)
T ss_dssp TTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTT---THHHHHHHH---HHHTCEEEEESSCCCHHHHHHHH
T ss_pred ccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCce---eehHHHHHH---HhcCcccceeeeeeHHHHHHHHH
Confidence 12 3346777778 9999996432111000001111 223333333 33579999999999999999999
Q ss_pred HhC-CCEEEecccccCC
Q 010640 371 VLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~~ 386 (505)
..| ||+|++|+.|+.-
T Consensus 297 ~~G~aD~V~iGR~~lan 313 (343)
T 3kru_A 297 SNERADLVALGRELLRN 313 (343)
T ss_dssp HTTSCSEEEESHHHHHC
T ss_pred hchhhHHHHHHHHHhcC
Confidence 999 9999999998753
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=8.8e-06 Score=76.12 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEV 329 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~ 329 (505)
.+.++.+.+.|+|.+.+ .. . ..+.++..++. +.+++++ +.|.+++..+.+.|+|+|.+- + +. .
T Consensus 70 ~~~i~~a~~~Gad~V~~--~~--~--~~~~~~~~~~~--g~~~~~g-~~t~~e~~~a~~~G~d~v~v~--~-----t~-~ 132 (212)
T 2v82_A 70 PEQVDALARMGCQLIVT--PN--I--HSEVIRRAVGY--GMTVCPG-CATATEAFTALEAGAQALKIF--P-----SS-A 132 (212)
T ss_dssp HHHHHHHHHTTCCEEEC--SS--C--CHHHHHHHHHT--TCEEECE-ECSHHHHHHHHHTTCSEEEET--T-----HH-H
T ss_pred HHHHHHHHHcCCCEEEe--CC--C--CHHHHHHHHHc--CCCEEee-cCCHHHHHHHHHCCCCEEEEe--c-----CC-C
Confidence 35788899999999963 21 1 12344444444 6777776 889999999999999999651 1 10 0
Q ss_pred cccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 330 CAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 330 ~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.| +..+.++ ++.. ++||+++|||. ..++.+++.+||++|.+|+.|..
T Consensus 133 --~g---~~~~~~l---~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~ 181 (212)
T 2v82_A 133 --FG---PQYIKAL---KAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYR 181 (212)
T ss_dssp --HC---HHHHHHH---HTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCC
T ss_pred --CC---HHHHHHH---HHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 11 2333333 3333 49999999997 99999999999999999998854
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.18 E-value=3e-06 Score=72.24 Aligned_cols=100 Identities=10% Similarity=-0.089 Sum_probs=70.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCC-CCccCC-CCcceEE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLG-KGTVGP-DGKWMVG 240 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~-~~~~d~-~~~l~v~ 240 (505)
+.+++++|++ +++++.+++++.++++.|.+++...+||+|+|+++|+||.+|+++........ .+..+. .... .
T Consensus 4 s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~-~- 79 (128)
T 3gby_A 4 SVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGWPTVKEKLGEELLETV-R- 79 (128)
T ss_dssp TCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCBCC-C-
T ss_pred ceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHHhhCCcccCcHHHHccCCC-c-
Confidence 4578999999 99999999999999999999999999999999999999999999875432110 000010 0000 0
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEe
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
.+.......+.++.+.+.+...+.+.
T Consensus 80 -~v~~~~~l~~~~~~~~~~~~~~lpVv 105 (128)
T 3gby_A 80 -SYRPGEQLFDNLISVAAAKCSVVPLA 105 (128)
T ss_dssp -CBCTTSBGGGSHHHHHHCSSSEEEEE
T ss_pred -EECCCCCHHHHHHHHHhCCCcEEEEE
Confidence 12222334556667777777755443
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=83.75 Aligned_cols=182 Identities=14% Similarity=0.090 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHCCCCeeEEeeC-CeeeeEEee---chhhhhhcCCCCCCCccCCCCcceEEEeecCCcc-------HHHH
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKD-GERLDVVTR---EDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRES-------DKER 252 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~---~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~-------~~e~ 252 (505)
+..+.++.+.+.+.+.+-++|= +..-|-..+ .++++.... .....+.++..+...++ ..+.
T Consensus 281 dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~--------~~~ipi~vgGGIr~~~d~~~~~~~~~~~ 352 (555)
T 1jvn_A 281 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAK--------TVFVPLTVGGGIKDIVDVDGTKIPALEV 352 (555)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTT--------TCCSCEEEESSCSCEECTTCCEECHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHh--------hCCCcEEEeCccccchhcccccchHHHH
Confidence 4556777888889999999873 211111111 122333211 11234556666643322 5688
Q ss_pred HHHHHHcCccEEEEeCCC----------CCchhHHHHHHHHHHhCCC--ceEEE--cc----------------------
Q 010640 253 LEHLVKAGVNVVVLDSSQ----------GNSSFQIEMIKYAKKTYPE--LDVIG--GN---------------------- 296 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~----------g~~~~~~~~i~~l~~~~~~--~~Vi~--g~---------------------- 296 (505)
++.++++|++.+.+.+.. +......+.++.+.+.|.. +.+.+ +.
T Consensus 353 a~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (555)
T 1jvn_A 353 ASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPN 432 (555)
T ss_dssp HHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTT
T ss_pred HHHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCC
Confidence 899999999999996532 0000012456666665531 21111 10
Q ss_pred -------------------cCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEe
Q 010640 297 -------------------VVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIA 356 (505)
Q Consensus 297 -------------------V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa 356 (505)
+...+.++.+.++|++.|.+- .....|. ..+..+.+.++.+ ..++|||+
T Consensus 433 g~~~~~~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t--------~~~~dG~~~G~d~~li~~l~~---~~~iPVIa 501 (555)
T 1jvn_A 433 GEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLN--------CIDKDGSNSGYDLELIEHVKD---AVKIPVIA 501 (555)
T ss_dssp CCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEEC--------CGGGTTTCSCCCHHHHHHHHH---HCSSCEEE
T ss_pred CCcceeEEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEe--------CCCCCCCCCCCCHHHHHHHHH---hCCccEEE
Confidence 123688999999999999662 1111111 1145555655544 45799999
Q ss_pred cCCCCCHHHHHHHHH-hCCCEEEeccccc
Q 010640 357 DGGISNSGHIVKALV-LGASTVMMGSFLA 384 (505)
Q Consensus 357 ~GGI~~~~di~kal~-lGA~~V~~G~~f~ 384 (505)
+|||.+..|+.+++. .||++|++|++|.
T Consensus 502 sGGi~s~~d~~~~~~~~G~~gvivg~a~~ 530 (555)
T 1jvn_A 502 SSGAGVPEHFEEAFLKTRADACLGAGMFH 530 (555)
T ss_dssp CSCCCSHHHHHHHHHHSCCSEEEESHHHH
T ss_pred ECCCCCHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999999998 8999999999985
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=76.69 Aligned_cols=174 Identities=16% Similarity=0.113 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+..+.++.+.+.+.+.+-|.|- ..--+--..-++++... .....++++..+. ..+.++.+++.|+
T Consensus 30 ~~~~~~a~~~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~---------~~~ipvi~~Ggi~----~~~~~~~~~~~Ga 96 (241)
T 1qo2_A 30 KDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLS---------EFAEHIQIGGGIR----SLDYAEKLRKLGY 96 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG---------GGGGGEEEESSCC----SHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHcCCCEEEEecccccccCCchhHHHHHHHH---------hcCCcEEEECCCC----CHHHHHHHHHCCC
Confidence 45677888889999988877752 10000000111222211 0111233333332 3466777888999
Q ss_pred cEEEEeCCC-CCchhHHHHHHHHHHhCCC-ceEEEccc----------------CCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 262 NVVVLDSSQ-GNSSFQIEMIKYAKKTYPE-LDVIGGNV----------------VTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 262 d~I~i~~~~-g~~~~~~~~i~~l~~~~~~-~~Vi~g~V----------------~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
|.+.+.... ..+ +.+..+ +.++. +.+.+ .+ ...+.++.+.++|++.|.+..
T Consensus 97 d~V~lg~~~l~~p----~~~~~~-~~~g~~i~~~~-d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~----- 165 (241)
T 1qo2_A 97 RRQIVSSKVLEDP----SFLKSL-REIDVEPVFSL-DTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTE----- 165 (241)
T ss_dssp CEEEECHHHHHCT----THHHHH-HTTTCEEEEEE-EEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEE-----
T ss_pred CEEEECchHhhCh----HHHHHH-HHcCCcEEEEE-EecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEEEe-----
Confidence 999873321 111 234445 44421 12212 22 224557889999999886631
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-----C-CCEEEecccccC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-----G-ASTVMMGSFLAG 385 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-----G-A~~V~~G~~f~~ 385 (505)
.++.-...| +.++.+.++++. .++|||+.|||.++.|+.+++.+ | |++|++|+.|..
T Consensus 166 -~~~~g~~~g-~~~~~i~~l~~~---~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~ 228 (241)
T 1qo2_A 166 -IEKDGTLQE-HDFSLTKKIAIE---AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLE 228 (241)
T ss_dssp -TTHHHHTCC-CCHHHHHHHHHH---HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHT
T ss_pred -ecccccCCc-CCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHc
Confidence 111111112 345555555543 47999999999999999999999 9 999999999864
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.16 E-value=4.2e-06 Score=71.22 Aligned_cols=101 Identities=9% Similarity=0.019 Sum_probs=68.8
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEE
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGA 241 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a 241 (505)
.+++++|++..+++++++++++.++++.|.+++...+||+|+ |+++|+||..|+++.........+..+.-... +
T Consensus 3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m~~~-~-- 79 (127)
T 3nqr_A 3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTA-V-- 79 (127)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHCBCC-C--
T ss_pred cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHcCCC-e--
Confidence 468899997335999999999999999999999999999987 69999999999998754221100011100011 1
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEe
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
.+.......+.++.+.+.+...+.+.
T Consensus 80 ~v~~~~~l~~a~~~m~~~~~~~lpVv 105 (127)
T 3nqr_A 80 VVPESKRVDRMLKEFRSQRYHMAIVI 105 (127)
T ss_dssp EEETTCBHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCcHHHHHHHHHhcCCeEEEEE
Confidence 12222335566666667777666553
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=80.45 Aligned_cols=127 Identities=12% Similarity=0.129 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCCCceEEEc----c-cC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYPELDVIGG----N-VV 298 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~~~~Vi~g----~-V~ 298 (505)
++.+.++.+.++|.|.|.|+.++|. .+...+.++.+|+.++.-||.++ . ..
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~ 241 (364)
T 1vyr_A 162 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 241 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccc
Confidence 3556667778899999999887642 01356778889998742277762 1 11
Q ss_pred -------CHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Q 010640 299 -------TMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIV 367 (505)
Q Consensus 299 -------t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ 367 (505)
+.+ .++.+.++|+|+|.++.+. .... ...+ ...+. ++.+..++|||+.||| ++.++.
T Consensus 242 ~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~--~~~~-----~~~~-~~~~~---~v~~~~~iPvi~~Ggi-t~~~a~ 309 (364)
T 1vyr_A 242 NVDNGPNEEADALYLIEELAKRGIAYLHMSETD--LAGG-----KPYS-EAFRQ---KVRERFHGVIIGAGAY-TAEKAE 309 (364)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB--TTBC-----CCCC-HHHHH---HHHHHCCSEEEEESSC-CHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCEEEEecCc--ccCC-----Cccc-HHHHH---HHHHHCCCCEEEECCc-CHHHHH
Confidence 233 3788889999999986421 1000 0112 22233 3334467999999999 999999
Q ss_pred HHHHhC-CCEEEecccccCC
Q 010640 368 KALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~lG-A~~V~~G~~f~~~ 386 (505)
+++..| ||+|++|+.|+..
T Consensus 310 ~~l~~g~aD~V~~gR~~l~~ 329 (364)
T 1vyr_A 310 DLIGKGLIDAVAFGRDYIAN 329 (364)
T ss_dssp HHHHTTSCSEEEESHHHHHC
T ss_pred HHHHCCCccEEEECHHHHhC
Confidence 999998 9999999999764
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-05 Score=74.79 Aligned_cols=136 Identities=17% Similarity=0.235 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc---------------------hhHHHHHHHHHHhCCCceEEEcccCC-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS---------------------SFQIEMIKYAKKTYPELDVIGGNVVT------- 299 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~---------------------~~~~~~i~~l~~~~~~~~Vi~g~V~t------- 299 (505)
...+.++.+.+.|+|++++..+...+ ....+.++.+++.+|++|+++=...+
T Consensus 32 ~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~ 111 (262)
T 2ekc_A 32 TSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGL 111 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhH
Confidence 46677889999999999998755322 23457788898887678887611111
Q ss_pred HHHHHHHHHcCCCEEEEc-cCC-------------c-c-e---ee-cc---------------------cccccCcChH-
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGS-------------G-S-I---CT-TQ---------------------EVCAVGRGQA- 337 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~-------------g-~-~---~~-~~---------------------~~~g~g~p~~- 337 (505)
...++.+.++|+|++.+. ... | . + .. +. ..+|...+..
T Consensus 112 ~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~ 191 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPY 191 (262)
T ss_dssp HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESSCC---------C
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCc
Confidence 356678889999988764 200 0 0 0 00 00 0111111111
Q ss_pred HHH-HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 338 TAV-YKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 338 ~~l-~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
..+ ..+.+..+..++||+..+||.++.++.+ +..|||+|.+||.|.
T Consensus 192 ~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~ 238 (262)
T 2ekc_A 192 ERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IGSFADGVVVGSALV 238 (262)
T ss_dssp HHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHH
T ss_pred ccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHH
Confidence 112 2333333345799999999999999999 889999999999985
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.5e-06 Score=74.20 Aligned_cols=102 Identities=14% Similarity=0.034 Sum_probs=71.5
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVG 240 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~ 240 (505)
..+++++|++..+++++++++++.+++++|.++++..+||+|+ ++++|+||..|+++....... .+..+.-.. .+.
T Consensus 41 ~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~-~~v~~im~~-~~~ 118 (172)
T 3lhh_A 41 ERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGER-LELVDLVKN-CNF 118 (172)
T ss_dssp --CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTCC-CCGGGGCBC-CEE
T ss_pred CCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcCc-ccHHHHhcC-CeE
Confidence 4579999995448999999999999999999999999999987 899999999999987653211 001111111 121
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeC
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDS 268 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~ 268 (505)
+. ......+.++.+.+.+...+.+..
T Consensus 119 v~--~~~~l~~a~~~m~~~~~~~~pVvd 144 (172)
T 3lhh_A 119 VP--NSLSGMELLEHFRTTGSQMVFVVD 144 (172)
T ss_dssp EE--TTCCHHHHHHHHHHHTCSEEEEEC
T ss_pred eC--CCCCHHHHHHHHHHcCCeEEEEEe
Confidence 22 233466677777777777665533
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.5e-05 Score=73.70 Aligned_cols=177 Identities=9% Similarity=0.093 Sum_probs=113.0
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
.++....+..+...+. ...+-|..| ..+.| +..||....... .+++-...--. +..+ +..+.+
T Consensus 58 ~~~~~~~~iA~~y~~~-A~~IsVlTd~~~F~g--s~~dL~~ir~~v-----------~lPvLrKDfi~-~~~q-i~ea~~ 121 (251)
T 1i4n_A 58 NADASLEDFIRMYDEL-ADAISILTEKHYFKG--DPAFVRAARNLT-----------CRPILAKDFYI-DTVQ-VKLASS 121 (251)
T ss_dssp CTTCCHHHHHHHHHHH-CSEEEEECCCSSSCC--CTHHHHHHHTTC-----------CSCEEEECCCC-STHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHh-CCceEEEecccccCC--CHHHHHHHHHhC-----------CCCEEEeeCCC-CHHH-HHHHHH
Confidence 3444666666666666 777778766 55666 456665544321 12222221111 2233 445888
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHc-CCCEEEEccCCcceeecccccccCcChH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEA-GVDGLRVGMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~a-Gad~I~v~~g~g~~~~~~~~~g~g~p~~ 337 (505)
.|+|++.+..+.=......+.++..++. +..+++ ++.+.+++..+.++ |+|.|-+-+ +.+.++.. .+
T Consensus 122 ~GAD~ilLi~a~l~~~~l~~l~~~a~~l--Gl~~lv-Ev~~~eE~~~A~~l~g~~iIGinn--------r~l~t~~~-d~ 189 (251)
T 1i4n_A 122 VGADAILIIARILTAEQIKEIYEAAEEL--GMDSLV-EVHSREDLEKVFSVIRPKIIGINT--------RDLDTFEI-KK 189 (251)
T ss_dssp TTCSEEEEEGGGSCHHHHHHHHHHHHTT--TCEEEE-EECSHHHHHHHHTTCCCSEEEEEC--------BCTTTCCB-CT
T ss_pred cCCCEEEEecccCCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHhcCCCCEEEEeC--------cccccCCC-CH
Confidence 9999998876642223455555555554 788877 89999999999999 999884422 33333322 22
Q ss_pred HHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 338 TAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 338 ~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.....+..... .++++|+.|||.++.|+.++..+ |++|.+|+.|..+
T Consensus 190 ~~~~~l~~~ip-~~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~ 236 (251)
T 1i4n_A 190 NVLWELLPLVP-DDTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKA 236 (251)
T ss_dssp THHHHHGGGSC-TTSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHC
T ss_pred HHHHHHHHhCC-CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence 22222222221 25799999999999999999999 9999999999754
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.13 E-value=2e-05 Score=75.48 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=89.7
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc----
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM---- 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~---- 318 (505)
.+..+.++...+.|++.+++ |. +........+.++.+.+.+ .+|+.+ |++.+.++++.+.++|+|-+.++.
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~~~i~~i~~~~-~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~~ 109 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQFALIEKLAKEV-SVNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAIK 109 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCHHHHHHHHHHC-CSEEEEESSCCCHHHHHHHHHTTCSEEEECTTTTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccccchhHHHHHHHHHHhc-CCCeEeccccccHHHHHHHHHcCCCEEEEcccccc
Confidence 35778888899999998866 33 2222334567788887776 788866 688999999999999999998863
Q ss_pred ------------CCcce------------------------------------------eeccc-ccccC-cChHHHHHH
Q 010640 319 ------------GSGSI------------------------------------------CTTQE-VCAVG-RGQATAVYK 342 (505)
Q Consensus 319 ------------g~g~~------------------------------------------~~~~~-~~g~g-~p~~~~l~~ 342 (505)
|.-.+ ..+.. ..|.. .|.+..+..
T Consensus 110 ~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~ 189 (243)
T 4gj1_A 110 DATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKL 189 (243)
T ss_dssp CHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHH
T ss_pred CCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHH
Confidence 10000 00000 01111 144444544
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+.+.. .++|||++||+.+..|+.+. ..++++|.+|++|
T Consensus 190 l~~~~--~~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al 227 (243)
T 4gj1_A 190 IHEIF--PNICIQASGGVASLKDLENL-KGICSGVIVGKAL 227 (243)
T ss_dssp HHHHC--TTSEEEEESCCCSHHHHHHT-TTTCSEEEECHHH
T ss_pred HHHhc--CCCCEEEEcCCCCHHHHHHH-HccCchhehHHHH
Confidence 43321 25999999999999999775 5679999999988
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=9.3e-06 Score=69.39 Aligned_cols=102 Identities=13% Similarity=0.200 Sum_probs=71.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCC-CCCccCCCCcceEEE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNL-GKGTVGPDGKWMVGA 241 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~-~~~~~d~~~~l~v~a 241 (505)
+.++.++|++ +++++++++++.++++.|.+++.+.+||+|+|+++|+||..|+++....... ..+..+.-..-..
T Consensus 3 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~-- 78 (133)
T 2ef7_A 3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLI-- 78 (133)
T ss_dssp CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCC--
T ss_pred cccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCCCCE--
Confidence 3578999998 8999999999999999999999999999998999999999999876543211 0001111000000
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeC
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDS 268 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~ 268 (505)
.+.......+.++.+.+.+...+.+..
T Consensus 79 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd 105 (133)
T 2ef7_A 79 TIREDSPITGALALMRQFNIRHLPVVD 105 (133)
T ss_dssp CEETTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred EECCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 112233456677777778887665533
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.6e-06 Score=70.28 Aligned_cols=102 Identities=10% Similarity=-0.021 Sum_probs=70.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCC-CCCccCCCCcceE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNL-GKGTVGPDGKWMV 239 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~-~~~~~d~~~~l~v 239 (505)
+.++.++|++..+++++.+++++.+++++|.+++...+||+|+ |+++|+||..|+++....... ..+..+.-.. .+
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~-~~ 80 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRP-AT 80 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBC-CC
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCC-Ce
Confidence 3468899995448899999999999999999999999999987 699999999999987541110 0001111111 11
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEe
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
. +.......+.++.+.+.+...+.+-
T Consensus 81 ~--v~~~~~l~~~~~~m~~~~~~~~~Vv 106 (136)
T 3lfr_A 81 F--VPESKRLNVLLREFRANHNHMAIVI 106 (136)
T ss_dssp E--EETTCBHHHHHHHHHHHTCCEEEEE
T ss_pred E--ECCCCcHHHHHHHHHhcCCeEEEEE
Confidence 1 1123346666777777777766553
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-06 Score=72.98 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=53.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~ 222 (505)
+.++.++|++..+++++++++++.++++.|.+++...+||+|+ |+++|+||..|+++...
T Consensus 5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~ 66 (130)
T 3i8n_A 5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ 66 (130)
T ss_dssp --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH
T ss_pred cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh
Confidence 4578999997557889999999999999999999999999986 79999999999998764
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-06 Score=72.42 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=54.4
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.++.++|++..+++++.+++++.++++.|.+++...+||+|+ |+++|+||..|+++...
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 87 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFD 87 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHC
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHh
Confidence 479999986557899999999999999999999999999998 99999999999998764
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=73.33 Aligned_cols=123 Identities=19% Similarity=0.249 Sum_probs=85.6
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+++.. .. ..++++.++++|+++++. .+. ..+.++..++. +.+++.| +.|++++..+.+.|+|++.
T Consensus 62 ~~~~gag~-vl--~~d~~~~A~~~GAd~v~~--~~~----d~~v~~~~~~~--g~~~i~G-~~t~~e~~~A~~~Gad~v~ 129 (207)
T 2yw3_A 62 GLLLGAGT-VR--SPKEAEAALEAGAAFLVS--PGL----LEEVAALAQAR--GVPYLPG-VLTPTEVERALALGLSALK 129 (207)
T ss_dssp SCEEEEES-CC--SHHHHHHHHHHTCSEEEE--SSC----CHHHHHHHHHH--TCCEEEE-ECSHHHHHHHHHTTCCEEE
T ss_pred CCEEEeCe-Ee--eHHHHHHHHHcCCCEEEc--CCC----CHHHHHHHHHh--CCCEEec-CCCHHHHHHHHHCCCCEEE
Confidence 45565554 22 348889999999999964 221 13444555554 6788876 8899999999999999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+- + . ... ..++.+..++.... ++|+++.|||. ..++...+++||++|.+|+.+..
T Consensus 130 ~f--p-----a---~~~--gG~~~lk~l~~~~~--~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~ 184 (207)
T 2yw3_A 130 FF--P-----A---EPF--QGVRVLRAYAEVFP--EVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ 184 (207)
T ss_dssp ET--T-----T---TTT--THHHHHHHHHHHCT--TCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS
T ss_pred Ee--c-----C---ccc--cCHHHHHHHHhhCC--CCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC
Confidence 61 1 0 011 01233443333221 69999999996 79999999999999999998754
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-05 Score=72.09 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEee-chhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTR-EDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~-~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
.++.+.++.+.+.+.+.+=+..- |.....++. -++.+..... .+..+.+...+..++ +.++.+.+.|
T Consensus 16 ~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~--------~~~~~~v~l~v~d~~---~~i~~~~~~g 84 (220)
T 2fli_A 16 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKH--------SKLVFDCHLMVVDPE---RYVEAFAQAG 84 (220)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTT--------CCSEEEEEEESSSGG---GGHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHh--------CCCCEEEEEeecCHH---HHHHHHHHcC
Confidence 46788899999988887654432 443333332 2333333210 112344554544332 2457788899
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEE-ccCCcceeecccccccCcChHH
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
+|.+.+|...+. .....++.+++. +..+++. +..+..+.......++|++.+ +.++|.. +..+ +| ..+.
T Consensus 85 ad~v~vh~~~~~--~~~~~~~~~~~~--g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~--g~~~-~~--~~~~ 155 (220)
T 2fli_A 85 ADIMTIHTESTR--HIHGALQKIKAA--GMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFG--GQAF-IP--ECLE 155 (220)
T ss_dssp CSEEEEEGGGCS--CHHHHHHHHHHT--TSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCS--SCCC-CG--GGHH
T ss_pred CCEEEEccCccc--cHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCc--cccc-CH--HHHH
Confidence 999999876552 344566666664 5555442 223444333334567998865 4333211 1111 11 2233
Q ss_pred HHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 339 AVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 339 ~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
-+..+++.+... ++|++++|||. +.++.+++.+||++|.+|+.+..
T Consensus 156 ~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~ 203 (220)
T 2fli_A 156 KVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFK 203 (220)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred HHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhC
Confidence 444455544322 68999999999 88999999999999999999864
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.08 E-value=6.1e-05 Score=78.04 Aligned_cols=176 Identities=11% Similarity=0.093 Sum_probs=113.3
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
.++....+..+...+. ...+=|..| ..+.| +..||....... .+++-... -.-+..+ +..+..
T Consensus 65 ~~~~~~~~iA~~y~~~-A~~IsvLTd~~~F~g--s~~dL~~vr~~v-----------~lPvLrKD-FI~d~~Q-i~ea~~ 128 (452)
T 1pii_A 65 RDDFDPARIAAIYKHY-ASAISVLTDEKYFQG--SFNFLPIVSQIA-----------PQPILCKD-FIIDPYQ-IYLARY 128 (452)
T ss_dssp CSSCCHHHHHHHHTTT-CSEEEEECCSTTTCC--CTTHHHHHHHHC-----------CSCEEEES-CCCSHHH-HHHHHH
T ss_pred CCCCCHHHHHHHHHhh-CcEEEEEecccccCC--CHHHHHHHHHhc-----------CCCeEEEe-ccCCHHH-HHHHHH
Confidence 3445566666666666 777777655 55555 445554433211 01121111 1112333 445888
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
.|+|++.+..+.=......++++..++. +..+++ +|.+.+++..+.++|++.|-+- .+.+..+. +.+.
T Consensus 129 ~GAD~ILLi~a~l~~~~l~~l~~~a~~l--gm~~Lv-Evh~~eE~~~A~~lga~iIGin--------nr~L~t~~-~dl~ 196 (452)
T 1pii_A 129 YQADACLLMLSVLDDDQYRQLAAVAHSL--EMGVLT-EVSNEEEQERAIALGAKVVGIN--------NRDLRDLS-IDLN 196 (452)
T ss_dssp TTCSEEEEETTTCCHHHHHHHHHHHHHT--TCEEEE-EECSHHHHHHHHHTTCSEEEEE--------SEETTTTE-ECTH
T ss_pred cCCCEEEEEcccCCHHHHHHHHHHHHHc--CCeEEE-EeCCHHHHHHHHHCCCCEEEEe--------CCCCCCCC-CCHH
Confidence 9999998877643334456666666665 788888 8999999999999999988432 23333322 2344
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...++..... .++++|+.|||.++.|+.++..+ |++|.+|+.|..
T Consensus 197 ~~~~L~~~ip-~~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr 241 (452)
T 1pii_A 197 RTRELAPKLG-HNVTVISESGINTYAQVRELSHF-ANGFLIGSALMA 241 (452)
T ss_dssp HHHHHHHHHC-TTSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHT
T ss_pred HHHHHHHhCC-CCCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcC
Confidence 4444444443 26899999999999999999999 999999999864
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-05 Score=67.80 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=69.6
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-C--eeeeEEeechhhhhhcCCCC-CCCccCCCCcceE
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-G--ERLDVVTREDVERLKGYPNL-GKGTVGPDGKWMV 239 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g--~l~GiIt~~dil~~~~~~~~-~~~~~d~~~~l~v 239 (505)
.++.++|++ +++++++++++.++++.|.+++.+.+||+|+ + +++|+||..|+++....... ..+..+.-.+-.+
T Consensus 5 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~~~~ 82 (141)
T 2rih_A 5 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPIT 82 (141)
T ss_dssp CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCCE
T ss_pred eEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCCCCe
Confidence 468899998 9999999999999999999999999999998 7 99999999999987532211 0001111000111
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEe
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
.+... ...+.++.+.+.+...+.+.
T Consensus 83 --~v~~~-~l~~a~~~m~~~~~~~l~Vv 107 (141)
T 2rih_A 83 --VLDTD-PVHVAAEKMRRHNIRHVVVV 107 (141)
T ss_dssp --EETTS-BHHHHHHHHHHHTCSEEEEE
T ss_pred --EEcCC-CHHHHHHHHHHcCCeEEEEE
Confidence 12223 45666677777777666553
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.9e-05 Score=78.79 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=86.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc------------------------hhHHHHHHHHHHhCCCceEEEc--c---c-
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS------------------------SFQIEMIKYAKKTYPELDVIGG--N---V- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~------------------------~~~~~~i~~l~~~~~~~~Vi~g--~---V- 297 (505)
++.+.++.+.++|.|.|.|+..+|+- +...+.++.+|+.++.-||.++ . .
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~ 241 (365)
T 2gou_A 162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLN 241 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccC
Confidence 35566677788999999999866411 1346778888887632277662 1 0
Q ss_pred -----CCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 298 -----VTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 298 -----~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
.+.+ .++.+.++|+|+|.++.+. .. . ..+.| ...+. +..+..++|||+.||| ++.++.+
T Consensus 242 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~--~~-~----~~~~~-~~~~~---~i~~~~~iPvi~~Ggi-~~~~a~~ 309 (365)
T 2gou_A 242 GTVDADPILTYTAAAALLNKHRIVYLHIAEVD--WD-D----APDTP-VSFKR---ALREAYQGVLIYAGRY-NAEKAEQ 309 (365)
T ss_dssp SCCCSSHHHHHHHHHHHHHHTTCSEEEEECCB--TT-B----CCCCC-HHHHH---HHHHHCCSEEEEESSC-CHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--cC-C----CCCcc-HHHHH---HHHHHCCCcEEEeCCC-CHHHHHH
Confidence 1233 3788889999999986421 00 0 00112 22233 3334467999999999 9999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
++..| ||+|++|+.|+..
T Consensus 310 ~l~~g~aD~V~igR~~i~~ 328 (365)
T 2gou_A 310 AINDGLADMIGFGRPFIAN 328 (365)
T ss_dssp HHHTTSCSEEECCHHHHHC
T ss_pred HHHCCCcceehhcHHHHhC
Confidence 99999 9999999999863
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=75.71 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=86.1
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.+++.. .- ..+.++.++++|+++++. + +. ..+.++..++. +++++.| +.|++++..+.++|+|++.+
T Consensus 86 ~~iGaGT--Vl-t~~~a~~Ai~AGA~fIvs--P-~~---~~~vi~~~~~~--gi~~ipG-v~TptEi~~A~~~Gad~vK~ 153 (232)
T 4e38_A 86 MLIGAGT--IL-NGEQALAAKEAGATFVVS--P-GF---NPNTVRACQEI--GIDIVPG-VNNPSTVEAALEMGLTTLKF 153 (232)
T ss_dssp CEEEEEC--CC-SHHHHHHHHHHTCSEEEC--S-SC---CHHHHHHHHHH--TCEEECE-ECSHHHHHHHHHTTCCEEEE
T ss_pred CEEeECC--cC-CHHHHHHHHHcCCCEEEe--C-CC---CHHHHHHHHHc--CCCEEcC-CCCHHHHHHHHHcCCCEEEE
Confidence 4566553 22 478899999999999964 2 22 23556666666 7899885 78999999999999999976
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
= + .. . . +.+..+..++... -++|+++.||| +...+...+++||.++..|+.+.
T Consensus 154 F--P-----a~-~--~--gG~~~lkal~~p~--p~ip~~ptGGI-~~~n~~~~l~aGa~~~vgGs~l~ 206 (232)
T 4e38_A 154 F--P-----AE-A--S--GGISMVKSLVGPY--GDIRLMPTGGI-TPSNIDNYLAIPQVLACGGTWMV 206 (232)
T ss_dssp C--S-----TT-T--T--THHHHHHHHHTTC--TTCEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred C--c-----Cc-c--c--cCHHHHHHHHHHh--cCCCeeeEcCC-CHHHHHHHHHCCCeEEEECchhc
Confidence 1 1 10 0 1 1233343333222 25999999999 58999999999999999998775
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=67.39 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=67.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh-hhcCCCC-CCCccCCCCcceE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER-LKGYPNL-GKGTVGPDGKWMV 239 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~-~~~~~~~-~~~~~d~~~~l~v 239 (505)
..++.++|++ +++++++++++.++++.|.+++...+||+|+ |+++|+||..|+++ ....... ..+..+.-..-.+
T Consensus 6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~ 83 (138)
T 2yzi_A 6 KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLI 83 (138)
T ss_dssp TSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCC
T ss_pred hhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhCCCe
Confidence 4578999998 9999999999999999999999999999997 99999999999984 3221100 0001111000111
Q ss_pred EEeecCCccHHHHHHHHHHcCccEE
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVV 264 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I 264 (505)
.+.......+.++.+.+.+...+
T Consensus 84 --~v~~~~~l~~~~~~m~~~~~~~l 106 (138)
T 2yzi_A 84 --TANVNTPLGEVLRKMAEHRIKHI 106 (138)
T ss_dssp --EEETTSBHHHHHHHHHHHTCSEE
T ss_pred --EECCCCcHHHHHHHHHhcCCCEE
Confidence 11122345666777777777766
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.8e-06 Score=72.87 Aligned_cols=59 Identities=22% Similarity=0.244 Sum_probs=52.8
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhc
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKG 222 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~ 222 (505)
.+++++|++..+++++++++++.+++++|.++++..+||+++ |+++|+||..|+++...
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~ 62 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT 62 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence 357899986457899999999999999999999999999964 89999999999998864
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=86.17 Aligned_cols=137 Identities=17% Similarity=0.184 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhC-CCceEEEc----c--
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTY-PELDVIGG----N-- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~-~~~~Vi~g----~-- 296 (505)
++.+.++.+.++|.|.|.++.++|+ .....+.++.+|+.+ ++.|+.++ .
T Consensus 142 ~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~ 221 (671)
T 1ps9_A 142 NFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV 221 (671)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccC
Confidence 3556677788899999999876642 122577788888876 36777652 1
Q ss_pred --cCCH----HHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 297 --VVTM----YQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 297 --V~t~----e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
-.+. +.++.+.++|+|+|.++.+.-.... .......|....+..+.+..+..++|||+.|||.++.++.+++
T Consensus 222 ~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l 299 (671)
T 1ps9_A 222 EDGGTFAETVELAQAIEAAGATIINTGIGWHEARI--PTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDIL 299 (671)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSS--CSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEcCCCcccccc--ccccccCCcchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH
Confidence 1133 4567888999999988642110000 0000001111112223344455689999999999999999999
Q ss_pred HhC-CCEEEecccccCC
Q 010640 371 VLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~~ 386 (505)
..| ||+|++|++|+..
T Consensus 300 ~~g~aD~V~~gR~~l~~ 316 (671)
T 1ps9_A 300 SRGDADMVSMARPFLAD 316 (671)
T ss_dssp HTTSCSEEEESTHHHHC
T ss_pred HcCCCCEEEeCHHHHhC
Confidence 999 9999999998753
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.6e-05 Score=76.42 Aligned_cols=121 Identities=18% Similarity=0.164 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEcc-cC----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGGN-VV---- 298 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g~-V~---- 298 (505)
++.+.++.+.++|.|.|.|+.++|+ + +...+.++.+|+.++.-||.++- ..
T Consensus 154 ~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~ 233 (362)
T 4ab4_A 154 AYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAH 233 (362)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSS
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecccccc
Confidence 3556677788899999999987621 1 23567888888877422776631 00
Q ss_pred ----------CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 299 ----------TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 299 ----------t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
..+.++.|.++|+|+|.++.+. . +.+.. ..+++ ..++|||+.||+ ++.++.+
T Consensus 234 g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~---------~--~~~~~---~~ik~---~~~iPvi~~Ggi-t~e~a~~ 295 (362)
T 4ab4_A 234 DMGDADRAETFTYVARELGKRGIAFICSRERE---------A--DDSIG---PLIKE---AFGGPYIVNERF-DKASANA 295 (362)
T ss_dssp SCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC---------C--TTCCH---HHHHH---HHCSCEEEESSC-CHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC---------C--CHHHH---HHHHH---HCCCCEEEeCCC-CHHHHHH
Confidence 1234778889999999986432 0 11222 22333 346899999999 9999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
++..| ||+|++|++|+.-
T Consensus 296 ~l~~g~aD~V~iGR~~lan 314 (362)
T 4ab4_A 296 ALASGKADAVAFGVPFIAN 314 (362)
T ss_dssp HHHTTSCSEEEESHHHHHC
T ss_pred HHHcCCccEEEECHHhHhC
Confidence 99998 9999999998754
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=97.99 E-value=6.2e-05 Score=72.76 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=74.7
Q ss_pred HHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccC
Q 010640 256 LVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVG 333 (505)
Q Consensus 256 lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g 333 (505)
+.++|+|.+++.. .......+.++.+++. +++.+ +....+.+..+.+...+.+++.+....|... . ..+..
T Consensus 114 a~~aGadgv~v~d--~~~~~~~~~~~~~~~~--g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG-~--~~~~~ 186 (262)
T 1rd5_A 114 MKEAGVHGLIVPD--LPYVAAHSLWSEAKNN--NLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTG-P--RANVN 186 (262)
T ss_dssp HHHTTCCEEECTT--CBTTTHHHHHHHHHHT--TCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBC-T--TSCBC
T ss_pred HHHcCCCEEEEcC--CChhhHHHHHHHHHHc--CCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCC-C--CcCCC
Confidence 7889999887632 2123355666666665 44432 2333556677777777777665531111100 1 11111
Q ss_pred cChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 334 RGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 334 ~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
......+..+++ ..++||+++|||.++.++.+++.+|||+|.+||.|..
T Consensus 187 ~~~~~~i~~v~~---~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~ 235 (262)
T 1rd5_A 187 PRVESLIQEVKK---VTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 235 (262)
T ss_dssp THHHHHHHHHHH---HCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred chHHHHHHHHHh---hcCCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence 112233444433 3579999999999999999999999999999999854
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.1e-06 Score=73.07 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=54.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-C-eeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-G-ERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g-~l~GiIt~~dil~~~~ 222 (505)
..++.++|+++.+++++++++++.+++++|.+++...+||+|+ + +++|+||..|+++...
T Consensus 37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~ 98 (156)
T 3oi8_A 37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMF 98 (156)
T ss_dssp TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSS
T ss_pred CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHH
Confidence 5679999997557899999999999999999999999999998 5 9999999999998753
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-05 Score=68.86 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=51.6
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..++.++|++ + +++.+++++.++++.|.+++...+||+|+ |+++|+||..|+++..
T Consensus 16 ~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~ 72 (159)
T 3fv6_A 16 KLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRAS 72 (159)
T ss_dssp TCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred hCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHh
Confidence 4589999986 5 49999999999999999999999999998 9999999999999875
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.6e-05 Score=74.43 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCc
Q 010640 256 LVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR 334 (505)
Q Consensus 256 lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~ 334 (505)
+.+.|+|.+.+....- + . ..+|+.+. +..+.+ ++.|.+++..+.+.|+|+|.++. +..+....+...
T Consensus 108 A~~~gAdGVHLg~~dl-~---~---~~~r~~~~~~~~iG~-S~ht~~Ea~~A~~~GaDyI~vgp----vf~T~tK~~~~~ 175 (243)
T 3o63_A 108 ARAAGADVLHLGQRDL-P---V---NVARQILAPDTLIGR-STHDPDQVAAAAAGDADYFCVGP----CWPTPTKPGRAA 175 (243)
T ss_dssp HHHHTCSEEEECTTSS-C---H---HHHHHHSCTTCEEEE-EECSHHHHHHHHHSSCSEEEECC----SSCCCC-----C
T ss_pred HHHhCCCEEEecCCcC-C---H---HHHHHhhCCCCEEEE-eCCCHHHHHHHhhCCCCEEEEcC----ccCCCCCCCcch
Confidence 5567899887733211 1 1 23344442 344433 77899999999999999998752 111111111111
Q ss_pred ChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 335 p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
..+..+..+++.. ..++|+++.||| +..++..++.+||++|.+|+.|..+
T Consensus 176 ~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~a 225 (243)
T 3o63_A 176 PGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITSA 225 (243)
T ss_dssp CCHHHHHHHHTC----CCCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHTC
T ss_pred hhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhCC
Confidence 1233443333210 136999999999 9999999999999999999998653
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=5.9e-05 Score=70.89 Aligned_cols=125 Identities=16% Similarity=0.135 Sum_probs=83.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
....++.+.++|+|.+.++...+. ....+.++.+++. ++..+ +=++.|.+.+..+.+.|+|++.+..+ .+
T Consensus 72 p~~~~~~~~~aGad~i~vh~~~~~-~~~~~~~~~~~~~--g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~~-----~~ 143 (218)
T 3jr2_A 72 GAILSRMAFEAGADWITVSAAAHI-ATIAACKKVADEL--NGEIQIEIYGNWTMQDAKAWVDLGITQAIYHRS-----RD 143 (218)
T ss_dssp HHHHHHHHHHHTCSEEEEETTSCH-HHHHHHHHHHHHH--TCEEEEECCSSCCHHHHHHHHHTTCCEEEEECC-----HH
T ss_pred HHHHHHHHHhcCCCEEEEecCCCH-HHHHHHHHHHHHh--CCccceeeeecCCHHHHHHHHHcCccceeeeec-----cc
Confidence 344678889999999999875442 2234556666665 56554 33456788899998999998865211 00
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
....|. ......+..+++.+. .++|++++||| ++..+.+++.+||+++.+|+++.
T Consensus 144 ~~~~g~-~~~~~~l~~i~~~~~-~~~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~ 198 (218)
T 3jr2_A 144 AELAGI-GWTTDDLDKMRQLSA-LGIELSITGGI-VPEDIYLFEGIKTKTFIAGRALA 198 (218)
T ss_dssp HHHHTC-CSCHHHHHHHHHHHH-TTCEEEEESSC-CGGGGGGGTTSCEEEEEESGGGS
T ss_pred cccCCC-cCCHHHHHHHHHHhC-CCCCEEEECCC-CHHHHHHHHHcCCCEEEEchhhc
Confidence 011111 012233444444432 46999999999 69999999999999999999874
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.7e-05 Score=77.72 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCCCceEEEc-ccC----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYPELDVIGG-NVV---- 298 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~~~~Vi~g-~V~---- 298 (505)
++.+.++.+.++|.|.|.|+.++|+ .+...+.++.+|+.++.-||.++ +..
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~ 241 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAH 241 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSS
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccC
Confidence 3556677788899999999987631 12457788888888742277663 110
Q ss_pred ----------CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 299 ----------TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 299 ----------t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
..+.++.+.++|+|+|.++.+. .+.+.. ..+++ ..++|||+.||+ ++.++.+
T Consensus 242 g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-----------~~~~~~---~~ik~---~~~iPvi~~Ggi-t~e~a~~ 303 (361)
T 3gka_A 242 TMGDSDPAATFGHVARELGRRRIAFLFARESF-----------GGDAIG---QQLKA---AFGGPFIVNENF-TLDSAQA 303 (361)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC-----------STTCCH---HHHHH---HHCSCEEEESSC-CHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHcCCCEEEECCCC-----------CCHHHH---HHHHH---HcCCCEEEeCCC-CHHHHHH
Confidence 1335678888999999986432 011222 22333 346899999999 9999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
++..| ||+|++|+.|+.-
T Consensus 304 ~l~~G~aD~V~iGR~~lad 322 (361)
T 3gka_A 304 ALDAGQADAVAWGKLFIAN 322 (361)
T ss_dssp HHHTTSCSEEEESHHHHHC
T ss_pred HHHcCCccEEEECHHhHhC
Confidence 99998 9999999999764
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.98 E-value=9e-05 Score=70.00 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCC--ceEEE-cccCCHHHHHHH----HHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPE--LDVIG-GNVVTMYQAQNL----IEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~--~~Vi~-g~V~t~e~a~~l----~~aGad~I~v 316 (505)
....++.+++.|+|.|.+...- |+...+.+.++.+++..++ +++|. -...+.+....+ .++|+|+|+.
T Consensus 97 Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKT 176 (239)
T 3ngj_A 97 KAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKT 176 (239)
T ss_dssp HHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEEC
Confidence 4456677888999999776643 4456678888888887643 45555 122465554444 7899999998
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
+.|-+ .+..++..+...++.. ..+++|.++|||++..|+.+.+.+||+-++..+
T Consensus 177 STGf~----------~ggAt~~dv~lmr~~v-g~~v~VKasGGIrt~~da~~~i~aGA~riGtS~ 230 (239)
T 3ngj_A 177 STGFG----------THGATPEDVKLMKDTV-GDKALVKAAGGIRTFDDAMKMINNGASRIGASA 230 (239)
T ss_dssp CCSSS----------SCCCCHHHHHHHHHHH-GGGSEEEEESSCCSHHHHHHHHHTTEEEEEESC
T ss_pred CCCCC----------CCCCCHHHHHHHHHhh-CCCceEEEeCCCCCHHHHHHHHHhcccceeccc
Confidence 74311 0123444444445544 346999999999999999999999999766554
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=6.7e-06 Score=79.08 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=53.2
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++ +++++.+++++.++.++|.+++++.+||||+ ++++|+||+.||+.+..
T Consensus 12 ~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~ 72 (250)
T 2d4z_A 12 NIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ 72 (250)
T ss_dssp SCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred CCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHH
Confidence 4579999999 9999999999999999999999999999986 47999999999997643
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00018 Score=67.06 Aligned_cols=108 Identities=24% Similarity=0.252 Sum_probs=85.5
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+.++..+.++.+++.|++++.+..... ...+.++.+++ +++.+.+|.+.+.+.++.+.++|+|++..+.
T Consensus 23 ~~~~~~~~~~~l~~gGv~~iel~~k~~---~~~~~i~~~~~--~~~~~gag~vl~~d~~~~A~~~GAd~v~~~~------ 91 (207)
T 2yw3_A 23 GGEDLLGLARVLEEEGVGALEITLRTE---KGLEALKALRK--SGLLLGAGTVRSPKEAEAALEAGAAFLVSPG------ 91 (207)
T ss_dssp SCCCHHHHHHHHHHTTCCEEEEECSST---HHHHHHHHHTT--SSCEEEEESCCSHHHHHHHHHHTCSEEEESS------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCh---HHHHHHHHHhC--CCCEEEeCeEeeHHHHHHHHHcCCCEEEcCC------
Confidence 455688899999999999999975433 34577777777 6888889999999999999999999995321
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.. .++.+.++..++|++. |+.|+.++.+|+.+|||.|.+
T Consensus 92 ----------~d----~~v~~~~~~~g~~~i~--G~~t~~e~~~A~~~Gad~v~~ 130 (207)
T 2yw3_A 92 ----------LL----EEVAALAQARGVPYLP--GVLTPTEVERALALGLSALKF 130 (207)
T ss_dssp ----------CC----HHHHHHHHHHTCCEEE--EECSHHHHHHHHHTTCCEEEE
T ss_pred ----------CC----HHHHHHHHHhCCCEEe--cCCCHHHHHHHHHCCCCEEEE
Confidence 00 1334455557899998 799999999999999999988
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-06 Score=73.04 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=53.5
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++ +++++.+++++.+++++|.++++..+||+|+ |+++|+||..|+++...
T Consensus 4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~ 62 (160)
T 2o16_A 4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE 62 (160)
T ss_dssp CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Confidence 3578999998 9999999999999999999999999999998 99999999999988653
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00015 Score=70.23 Aligned_cols=123 Identities=19% Similarity=0.148 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCC--ceEEEc-ccCCHHH----HHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPE--LDVIGG-NVVTMYQ----AQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~--~~Vi~g-~V~t~e~----a~~l~~aGad~I~v 316 (505)
....++.+++.|+|.|.+...- |+...+.+.++.+++.... +.+|.- ...+.+. ++.+.++|+|+|+.
T Consensus 128 Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKT 207 (288)
T 3oa3_A 128 KVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKT 207 (288)
T ss_dssp HHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEc
Confidence 3456677889999999765542 4456778888888887633 455552 2346555 67778899999987
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
+.|-+ . +..++..+...++..+ ..+++|.++|||++..|+.+.+.+||+-++..+
T Consensus 208 STGf~-------~---~GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~RiGtS~ 264 (288)
T 3oa3_A 208 STGFN-------G---PGASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERLGASA 264 (288)
T ss_dssp CCSSS-------S---CCCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred CCCCC-------C---CCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence 74311 0 1133444444444443 246999999999999999999999999655443
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=7.9e-06 Score=68.87 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=51.3
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
++.++|++ +++++++++++.++++.|.+++.+.+||+|+|+++|+||.+|+++..
T Consensus 2 ~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~G~it~~dl~~~~ 56 (125)
T 1pbj_A 2 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAI 56 (125)
T ss_dssp CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHH
T ss_pred CHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEeCCeeEEEEeHHHHHHHH
Confidence 46789998 99999999999999999999999999999989999999999998764
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=97.96 E-value=4.5e-06 Score=73.08 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=54.3
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++..+++++.+++++.++++.|.++++..+||+|+ |+++|+||..|+++...
T Consensus 14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 74 (150)
T 3lqn_A 14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGIL 74 (150)
T ss_dssp HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTB
T ss_pred cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHH
Confidence 4578999995336999999999999999999999999999998 99999999999998764
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.5e-05 Score=67.99 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=53.0
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
..++.++|++..+++++.+++++.++++.|.+++...+||+|+ |+++|+||..|++..
T Consensus 4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~ 62 (152)
T 4gqw_A 4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL 62 (152)
T ss_dssp CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence 3468899987667999999999999999999999999999999 999999999999864
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-05 Score=78.77 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEcc-c-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGGN-V----- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g~-V----- 297 (505)
++.+.++.+.++|.|.|.|+.++|+ + +...+.++.+|+.++.-||.++- .
T Consensus 167 ~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~ 246 (377)
T 2r14_A 167 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF 246 (377)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccC
Confidence 3556667778899999999876531 0 12567788888877422777741 1
Q ss_pred -----C----CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 298 -----V----TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 298 -----~----t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
. ..+.++.|.++|+|+|.++.+. .... ..+ .....+..+ .+..++|||+.||| ++.++.+
T Consensus 247 ~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~--~~~~--~~~---~~~~~~~~i---k~~~~iPvi~~Ggi-~~~~a~~ 315 (377)
T 2r14_A 247 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPD--WIGG--DIT---YPEGFREQM---RQRFKGGLIYCGNY-DAGRAQA 315 (377)
T ss_dssp TCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC----------C---CCTTHHHHH---HHHCCSEEEEESSC-CHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc--ccCC--CCc---chHHHHHHH---HHHCCCCEEEECCC-CHHHHHH
Confidence 0 2334788889999999986421 1100 011 012223333 33467999999999 7999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
++..| ||+|++|+.|+.-
T Consensus 316 ~l~~g~aD~V~igR~~l~~ 334 (377)
T 2r14_A 316 RLDDNTADAVAFGRPFIAN 334 (377)
T ss_dssp HHHTTSCSEEEESHHHHHC
T ss_pred HHHCCCceEEeecHHHHhC
Confidence 99998 9999999999864
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=6.2e-05 Score=77.28 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc----cc--
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG----NV-- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g----~V-- 297 (505)
++.+.++.+.++|.|.|.|+.++|+ + +...+.++.+|+.++..||.++ ..
T Consensus 172 ~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~ 251 (402)
T 2hsa_B 172 DYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHL 251 (402)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCST
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3556677788899999999986531 1 2357788888888743377664 10
Q ss_pred --C-------CHHHHHHHHHcC------CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC
Q 010640 298 --V-------TMYQAQNLIEAG------VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN 362 (505)
Q Consensus 298 --~-------t~e~a~~l~~aG------ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~ 362 (505)
. ..+.++.|.++| +|+|.++.+.-.........-...+ ...+..+.+..+..++|||+.||| +
T Consensus 252 g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vk~~~~iPvi~~G~i-~ 329 (402)
T 2hsa_B 252 DAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSE-EEEARLMRTLRNAYQGTFICSGGY-T 329 (402)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHH-HHHHHHHHHHHHHCSSCEEEESSC-C
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCC-cchHHHHHHHHHHCCCCEEEeCCC-C
Confidence 0 234567888899 9999986431100000000000001 011222334444567999999999 9
Q ss_pred HHHHHHHHHhC-CCEEEecccccCC
Q 010640 363 SGHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 363 ~~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
+.++.++|..| ||+|++|++|+.-
T Consensus 330 ~~~a~~~l~~g~aD~V~igR~~l~d 354 (402)
T 2hsa_B 330 RELGIEAVAQGDADLVSYGRLFISN 354 (402)
T ss_dssp HHHHHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHHHHCCCCceeeecHHHHhC
Confidence 99999999998 9999999999764
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.4e-06 Score=72.58 Aligned_cols=101 Identities=10% Similarity=0.021 Sum_probs=70.0
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEe-eC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLE-KD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMV 239 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVv-d~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v 239 (505)
..++.++|+++.+++++++++++.+++++|.+++...+||+ |+ |+++|+||..|+++....... .+..+.- +-.+
T Consensus 19 ~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~~-~~v~~~m-~~~~ 96 (153)
T 3oco_A 19 DKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDDK-AKISTIM-RDIV 96 (153)
T ss_dssp HCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHTT-SBGGGTC-BCCE
T ss_pred CCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCCC-CcHHHHh-CCCe
Confidence 56799999865589999999999999999999999999999 53 899999999999976432111 0011111 1112
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEEe
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
.+. ......+.++.+.+.+...+.+.
T Consensus 97 ~v~--~~~~l~~~~~~m~~~~~~~lpVv 122 (153)
T 3oco_A 97 SVP--ENMKVPDVMEEMSAHRVPMAIVI 122 (153)
T ss_dssp EEE--TTSBHHHHHHHHHHTTCSCEEEE
T ss_pred EEC--CCCCHHHHHHHHHHcCCcEEEEE
Confidence 122 23345666777777776665553
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=6.9e-05 Score=69.84 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=74.8
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEcc-CCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM-GSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~-g~g~~~~~~~~~g 331 (505)
++.+.+.|++.+.+..... . .+.++.+. ++..+.+ .+.+.+++..+.+.|+|++.++. .++.. ..+
T Consensus 79 ~~~a~~~gad~v~l~~~~~-~---~~~~~~~~---~~~~~~v-~~~t~~e~~~~~~~g~d~i~~~~~~~~~~-----~~~ 145 (215)
T 1xi3_A 79 VDVALAVDADGVQLGPEDM-P---IEVAKEIA---PNLIIGA-SVYSLEEALEAEKKGADYLGAGSVFPTKT-----KED 145 (215)
T ss_dssp HHHHHHHTCSEEEECTTSC-C---HHHHHHHC---TTSEEEE-EESSHHHHHHHHHHTCSEEEEECSSCC---------C
T ss_pred HHHHHHcCCCEEEECCccC-C---HHHHHHhC---CCCEEEE-ecCCHHHHHHHHhcCCCEEEEcCCccCCC-----CCC
Confidence 4567788999997732211 1 23333332 2444433 56788888888899999998752 11110 011
Q ss_pred cCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 332 VGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 332 ~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
........+.++++ ..++|++++|||. +.++.+++.+||++|.+|+.|..+
T Consensus 146 ~~~~~~~~l~~l~~---~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~ 196 (215)
T 1xi3_A 146 ARVIGLEGLRKIVE---SVKIPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMGA 196 (215)
T ss_dssp CCCCHHHHHHHHHH---HCSSCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHTS
T ss_pred CCCcCHHHHHHHHH---hCCCCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhCC
Confidence 11123344444333 3479999999999 999999999999999999998643
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=72.93 Aligned_cols=100 Identities=11% Similarity=0.013 Sum_probs=69.0
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhhcCCCCCCCccCCCCcceE
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMV 239 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v 239 (505)
...++.++|++..+++++++++++.+++++|.++++..+||+|+ |+++|+||..|++.......... .. ..... +
T Consensus 34 ~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~~~~-v~-~~~~~-~ 110 (173)
T 3ocm_A 34 AERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVR-RN-RLRDP-I 110 (173)
T ss_dssp TTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSSCC-GG-GSBCC-C
T ss_pred CCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCCcch-hH-hcCCC-e
Confidence 45689999986557899999999999999999999999999976 79999999999998752110000 11 10111 1
Q ss_pred EEeecCCccHHHHHHHHHHcCccEEEE
Q 010640 240 GAAIGTRESDKERLEHLVKAGVNVVVL 266 (505)
Q Consensus 240 ~a~i~~~~~~~e~~~~lieaGad~I~i 266 (505)
.+.......+.++.+.+.+...+.+
T Consensus 111 --~v~~~~~l~~al~~m~~~~~~~~~V 135 (173)
T 3ocm_A 111 --IVHESIGILRLMDTLKRSRGQLVLV 135 (173)
T ss_dssp --EECGGGCHHHHHHHHHHSTTCCEEE
T ss_pred --EECCCCcHHHHHHHHHHcCCeEEEE
Confidence 1112233556666666777665544
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=4e-05 Score=78.05 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEccc------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGGNV------ 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g~V------ 297 (505)
++.+.++.+.++|.|.|.|+.++|+ + +...+.++.+|+.++.-||.++--
T Consensus 168 ~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~ 247 (376)
T 1icp_A 168 EFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYN 247 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccC
Confidence 4556677788899999999987642 0 125777888888874227766310
Q ss_pred ----C-----CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 298 ----V-----TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 298 ----~-----t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
. ..+.++.|.++|+|+|.+..+.-... ......+ +. +..+ .+..++|||+.||| ++.++.+
T Consensus 248 g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~-~~~~~~~--~~---~~~v---r~~~~iPvi~~G~i-~~~~a~~ 317 (376)
T 1icp_A 248 EAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA-WEKIECT--ES---LVPM---RKAYKGTFIVAGGY-DREDGNR 317 (376)
T ss_dssp TCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC-------CC--CC---SHHH---HHHCCSCEEEESSC-CHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCC-CCccccH--HH---HHHH---HHHcCCCEEEeCCC-CHHHHHH
Confidence 0 13456778889999999864311000 0000011 11 2222 33467999999999 9999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
+|..| ||+|++|+.|+.-
T Consensus 318 ~l~~g~aD~V~~gR~~l~~ 336 (376)
T 1icp_A 318 ALIEDRADLVAYGRLFISN 336 (376)
T ss_dssp HHHTTSCSEEEESHHHHHC
T ss_pred HHHCCCCcEEeecHHHHhC
Confidence 99998 9999999999764
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=69.34 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=53.3
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechh-hhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDV-ERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~di-l~~~~ 222 (505)
..++.++|++ +++++.+++++.++++.|.+++...+||+|+ |+++|+||.+|+ ++...
T Consensus 7 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~ 66 (138)
T 2p9m_A 7 NIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIR 66 (138)
T ss_dssp TCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTT
T ss_pred cCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 4578999998 9999999999999999999999999999998 999999999999 87643
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=97.87 E-value=5.4e-05 Score=68.78 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=53.0
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.+++++|++ +++++.+++++.+++++|.+++...+||+|+ |+++|+||.+||++...
T Consensus 9 ~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 9 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTG
T ss_pred cCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHh
Confidence 568899998 9999999999999999999999999999997 99999999999998643
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.1e-05 Score=71.03 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=53.9
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++..+++++.+++++.++++.|.+++++.+||+|+ |+++|+||..|+++...
T Consensus 10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~ 70 (157)
T 2emq_A 10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAIL 70 (157)
T ss_dssp CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSB
T ss_pred hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence 4578999985447889999999999999999999999999998 99999999999998754
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=1.4e-05 Score=68.41 Aligned_cols=54 Identities=11% Similarity=0.242 Sum_probs=50.7
Q ss_pred ccccccc---cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhh
Q 010640 165 KIFDYMR---DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERL 220 (505)
Q Consensus 165 ~v~~im~---~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~ 220 (505)
+++++|+ + +++++++++++.++++.|.+++...+||+|+|+++|+||..|+++.
T Consensus 7 ~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~Givt~~dl~~~ 63 (135)
T 2rc3_A 7 TVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRK 63 (135)
T ss_dssp BHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred eHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEECCEEEEEEehHHHHHH
Confidence 6889998 6 8999999999999999999999999999988999999999999863
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00027 Score=68.43 Aligned_cols=123 Identities=15% Similarity=0.185 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCce-E-EEcccCCHHHHHHHHHcCCCEEEE-ccCC-cce
Q 010640 249 DKERLEHLVKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELD-V-IGGNVVTMYQAQNLIEAGVDGLRV-GMGS-GSI 323 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~-V-i~g~V~t~e~a~~l~~aGad~I~v-~~g~-g~~ 323 (505)
....++.+.++|+|.+.+ |.+. +...++.+..++. ++. + ++....+.+..+.+.+.+.++|.. +.-| ++.
T Consensus 114 ~~~f~~~~~~aGvdGvIipDlp~---ee~~~~~~~~~~~--gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~ 188 (271)
T 3nav_A 114 IDDFYQRCQKAGVDSVLIADVPT---NESQPFVAAAEKF--GIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGA 188 (271)
T ss_dssp HHHHHHHHHHHTCCEEEETTSCG---GGCHHHHHHHHHT--TCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC-----
T ss_pred HHHHHHHHHHCCCCEEEECCCCH---HHHHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 456788899999999766 3332 2344555555555 443 2 344556788889999998888876 3211 111
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ .+...+....+..+ .+..++|++..+||.+++++.+++..|||+|.+||.|.
T Consensus 189 ---~--~~~~~~~~~~v~~v---r~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv 241 (271)
T 3nav_A 189 ---E--TKANMPVHALLERL---QQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVV 241 (271)
T ss_dssp --------CCHHHHHHHHHH---HHTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred ---c--cCCchhHHHHHHHH---HHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 1 01111112223333 33347999999999999999999999999999999985
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=9.8e-06 Score=71.75 Aligned_cols=60 Identities=10% Similarity=0.023 Sum_probs=54.3
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++..+++++.+++++.+++++|.++++..+||+|+ |+++|+||..|+++...
T Consensus 13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~ 73 (159)
T 1yav_A 13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF 73 (159)
T ss_dssp TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred HhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhh
Confidence 4578899986556899999999999999999999999999998 99999999999998764
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.85 E-value=8.9e-05 Score=70.33 Aligned_cols=174 Identities=11% Similarity=0.065 Sum_probs=106.2
Q ss_pred HHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE
Q 010640 185 LGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV 263 (505)
Q Consensus 185 l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~ 263 (505)
..+..+.. +.+...+-|..| ..+-|= .+|+....... .+++--..-.. ..-++......|+|+
T Consensus 66 p~~iA~~~-~~GA~aiSVLTd~~~F~Gs--~~~L~~vr~~v-----------~lPvLrKDFii--d~yQI~eAr~~GADa 129 (258)
T 4a29_A 66 PIEYAKFM-ERYAVGLSITTEEKYFNGS--YETLRKIASSV-----------SIPILMSDFIV--KESQIDDAYNLGADT 129 (258)
T ss_dssp HHHHHHHH-TTTCSEEEEECCSTTTCCC--HHHHHHHHTTC-----------SSCEEEESCCC--SHHHHHHHHHHTCSE
T ss_pred HHHHHHHH-hCCCeEEEEeCCCCCCCCC--HHHHHHHHHhc-----------CCCEeeccccc--cHHHHHHHHHcCCCe
Confidence 34444433 467778888766 556663 34544443221 12221111111 123344455679999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHH
Q 010640 264 VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV 343 (505)
Q Consensus 264 I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v 343 (505)
+-+-.+.=......++++..++. +..+++ +|.+.++...+.++|++.|-+- .|++..+.+. +.....+
T Consensus 130 ILLI~a~L~~~~l~~l~~~A~~l--Gl~~Lv-EVh~~~El~rAl~~~a~iIGIN--------NRnL~tf~vd-l~~t~~L 197 (258)
T 4a29_A 130 VLLIVKILTERELESLLEYARSY--GMEPLI-LINDENDLDIALRIGARFIGIM--------SRDFETGEIN-KENQRKL 197 (258)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHT--TCCCEE-EESSHHHHHHHHHTTCSEEEEC--------SBCTTTCCBC-HHHHHHH
T ss_pred eehHHhhcCHHHHHHHHHHHHHH--hHHHHH-hcchHHHHHHHhcCCCcEEEEe--------CCCccccccC-HHHHHHH
Confidence 87654332222344444444444 666666 8999999999999999988442 2444433332 2323333
Q ss_pred HHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCC
Q 010640 344 SSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGST 387 (505)
Q Consensus 344 ~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~ 387 (505)
....+ .++.+|+.+||.++.|+.++..+|+++|.+|..|+.+.
T Consensus 198 ~~~ip-~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~ 240 (258)
T 4a29_A 198 ISMIP-SNVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNP 240 (258)
T ss_dssp HTTSC-TTSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCT
T ss_pred HhhCC-CCCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCC
Confidence 33332 25889999999999999999999999999999997643
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=71.37 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=75.2
Q ss_pred HHHHHHHHHcCccEEEEe--CCCCCchhHHHHHHHHHHhC--CCceEEEccc---------CCH---HHH-HHHHHcCCC
Q 010640 250 KERLEHLVKAGVNVVVLD--SSQGNSSFQIEMIKYAKKTY--PELDVIGGNV---------VTM---YQA-QNLIEAGVD 312 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~--~~~g~~~~~~~~i~~l~~~~--~~~~Vi~g~V---------~t~---e~a-~~l~~aGad 312 (505)
.+.++.+++.|++.+.++ .........++.++.+.+.. .++++++... .+. +.+ +.+.++|+|
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad 181 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGAD 181 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCC
Confidence 456777889999999333 22222223333333333321 1677776320 233 344 778899999
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC--HHH----HHHHHHhCCCEEEecccccCC
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN--SGH----IVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~--~~d----i~kal~lGA~~V~~G~~f~~~ 386 (505)
+|.++.. ..+..+.++. +..++||++.|||.. ..| +.+++.+||++|.+|+.|..+
T Consensus 182 ~i~~~~~---------------~~~~~l~~i~---~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~ 243 (273)
T 2qjg_A 182 IVKTSYT---------------GDIDSFRDVV---KGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQH 243 (273)
T ss_dssp EEEECCC---------------SSHHHHHHHH---HHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTS
T ss_pred EEEECCC---------------CCHHHHHHHH---HhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCC
Confidence 9977520 1234444443 345799999999995 777 777778999999999998653
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=75.27 Aligned_cols=133 Identities=19% Similarity=0.163 Sum_probs=86.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c------hhHHHHHHHHHHhC-----CCceEEEcc-
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S------SFQIEMIKYAKKTY-----PELDVIGGN- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~------~~~~~~i~~l~~~~-----~~~~Vi~g~- 296 (505)
++.+.+..+.++|.|.|.|+.++|+ + +...+.++.+++.+ ++.||.++-
T Consensus 171 ~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis 250 (419)
T 3l5a_A 171 QYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRAT 250 (419)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecc
Confidence 3556677788999999999976521 1 23466777777764 255676531
Q ss_pred ---------cCC----HHHHHHHHH-cCCCEEEEccCCcc-eeecccccc--cCcChHHHHHHHHHHHhhcCCcEEecCC
Q 010640 297 ---------VVT----MYQAQNLIE-AGVDGLRVGMGSGS-ICTTQEVCA--VGRGQATAVYKVSSIAAQSGVPVIADGG 359 (505)
Q Consensus 297 ---------V~t----~e~a~~l~~-aGad~I~v~~g~g~-~~~~~~~~g--~g~p~~~~l~~v~~~~~~~~ipvIa~GG 359 (505)
-.+ .+-++.|.+ +|+|+|.++.+... ..+.....+ ...+. ...+++... .++|||+.||
T Consensus 251 ~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~---a~~Ik~~v~-~~iPVI~~Gg 326 (419)
T 3l5a_A 251 PEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPV---NQIVYEHLA-GRIPLIASGG 326 (419)
T ss_dssp SCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBH---HHHHHHHHT-TSSCEEECSS
T ss_pred cccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHH---HHHHHHHcC-CCCeEEEECC
Confidence 112 345677888 99999999753210 001100111 11222 223333321 1599999999
Q ss_pred CCCHHHHHHHHHhCCCEEEecccccC
Q 010640 360 ISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 360 I~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
|.++.++.+++.. ||+|++|+.|+.
T Consensus 327 I~t~e~Ae~~L~~-aDlVaiGR~~Ia 351 (419)
T 3l5a_A 327 INSPESALDALQH-ADMVGMSSPFVT 351 (419)
T ss_dssp CCSHHHHHHHGGG-CSEEEESTHHHH
T ss_pred CCCHHHHHHHHHh-CCcHHHHHHHHH
Confidence 9999999999999 999999999975
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=68.90 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=50.7
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVER 219 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~ 219 (505)
.++.++|++ +++++++++++.++++.|.+++...+||+|+ |+++|+||..|++.
T Consensus 8 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~ 62 (133)
T 1y5h_A 8 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI 62 (133)
T ss_dssp CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHH
T ss_pred cCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHH
Confidence 468899998 9999999999999999999999999999988 99999999999984
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.6e-05 Score=68.90 Aligned_cols=58 Identities=9% Similarity=0.150 Sum_probs=53.7
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHCCCCe-eEEeeCCeeeeEEeechhhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDF-VVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~-lpVvd~g~l~GiIt~~dil~~~ 221 (505)
...++.++|++ +++++.+++++.+|+++|.+++.+. +||+|+++++|+||..|+++..
T Consensus 14 ~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~~~vGivt~~dl~~~~ 72 (157)
T 1o50_A 14 KVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72 (157)
T ss_dssp BHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHH
T ss_pred ccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECCEEEEEEEHHHHHHHH
Confidence 34578999998 9999999999999999999999999 9999888999999999999864
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00016 Score=70.19 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc---------------------hhHHHHHHHHHHhCCCceEEE-c--c-c---CC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS---------------------SFQIEMIKYAKKTYPELDVIG-G--N-V---VT 299 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~---------------------~~~~~~i~~l~~~~~~~~Vi~-g--~-V---~t 299 (505)
...+.++.+.++ +|+|++..++..+ ....+.++.+|+. +++|+++ + + + ..
T Consensus 31 ~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~-~~~Pii~m~y~n~v~~~g~ 108 (271)
T 1ujp_A 31 GFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL-TEKPLFLMTYLNPVLAWGP 108 (271)
T ss_dssp HHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CCSCEEEECCHHHHHHHCH
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCEEEEecCcHHHHhhH
Confidence 355677778888 9999998755322 2356788889888 4788876 1 2 2 23
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcc--------------------eeeccc--------------------ccccCcChHH
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGS--------------------ICTTQE--------------------VCAVGRGQAT 338 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~--------------------~~~~~~--------------------~~g~g~p~~~ 338 (505)
...++.+.++|+|++.+. ..... .+.+.. .+|...+...
T Consensus 109 ~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~ 188 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPE 188 (271)
T ss_dssp HHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC------------
T ss_pred HHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCc
Confidence 456788999999988764 21000 000000 1111110000
Q ss_pred H-HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 339 A-VYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 339 ~-l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. ...+.+..+..++||++.|||.+++++.++ .|||+|.+|+.|.
T Consensus 189 ~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~ 233 (271)
T 1ujp_A 189 EVKDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALV 233 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHH
T ss_pred cHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHh
Confidence 0 112233333457999999999999999996 9999999999985
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=67.27 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=52.3
Q ss_pred cccccc---ccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFD---YMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~---im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+.++.+ +|.+ +++++.+++++.++++.|.+++...+||+|+ |+++|+||..|+++...
T Consensus 7 ~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~ 68 (144)
T 2nyc_A 7 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIK 68 (144)
T ss_dssp GSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred hcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhc
Confidence 446677 8887 8999999999999999999999999999998 99999999999998653
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0001 Score=69.45 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=72.6
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEcc-CCcceeecccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGM-GSGSICTTQEVCA 331 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~-g~g~~~~~~~~~g 331 (505)
++.+.+.|++.+.+.. ... . +..+++.+ +..++.-++.+.+++..+.+.|+|++.++. ..+. + ..+
T Consensus 87 ~~~a~~~gad~v~l~~--~~~-~----~~~~~~~~-g~~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~---~--~~~ 153 (227)
T 2tps_A 87 VELALNLKADGIHIGQ--EDA-N----AKEVRAAI-GDMILGVSAHTMSEVKQAEEDGADYVGLGPIYPTE---T--KKD 153 (227)
T ss_dssp HHHHHHHTCSEEEECT--TSS-C----HHHHHHHH-TTSEEEEEECSHHHHHHHHHHTCSEEEECCSSCCC---S--SSS
T ss_pred HHHHHHcCCCEEEECC--Ccc-C----HHHHHHhc-CCcEEEEecCCHHHHHHHHhCCCCEEEECCCcCCC---C--CCC
Confidence 4567788999998722 111 1 23344433 222222245788888889999999998741 1110 0 011
Q ss_pred cCc-ChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 332 VGR-GQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 332 ~g~-p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+. .....+.+++ +..+ +|++++|||. +.++.+++.+||++|.+|+.|..
T Consensus 154 ~~~~~~~~~l~~~~---~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~ 205 (227)
T 2tps_A 154 TRAVQGVSLIEAVR---RQGISIPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQ 205 (227)
T ss_dssp CCCCCTTHHHHHHH---HTTCCCCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHT
T ss_pred CCCccCHHHHHHHH---HhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhc
Confidence 011 1123333333 3345 9999999999 99999999999999999999864
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=9.1e-05 Score=69.84 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=82.5
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.+++.. .- ..+.++.++++|+|+++. .+. ..+.++..++. +.+++.| +.|++++..+.++|+|++.+
T Consensus 69 l~vgaGt--vl-~~d~~~~A~~aGAd~v~~--p~~----d~~v~~~ar~~--g~~~i~G-v~t~~e~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 69 FLIAAGT--VL-TAEQVVLAKSSGADFVVT--PGL----NPKIVKLCQDL--NFPITPG-VNNPMAIEIALEMGISAVKF 136 (224)
T ss_dssp CEEEEES--CC-SHHHHHHHHHHTCSEEEC--SSC----CHHHHHHHHHT--TCCEECE-ECSHHHHHHHHHTTCCEEEE
T ss_pred cEEeeCc--Ee-eHHHHHHHHHCCCCEEEE--CCC----CHHHHHHHHHh--CCCEEec-cCCHHHHHHHHHCCCCEEEE
Confidence 4555553 21 348889999999999954 221 23445555663 7788886 88999999999999999976
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
.+ ... ...+..+..++.... ++|+++.||| +...+...+++ |+++|. |+.+.
T Consensus 137 --Fp-----a~~-----~gG~~~lk~l~~~~~--~ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~ 189 (224)
T 1vhc_A 137 --FP-----AEA-----SGGVKMIKALLGPYA--QLQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFV 189 (224)
T ss_dssp --TT-----TTT-----TTHHHHHHHHHTTTT--TCEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGG
T ss_pred --ee-----Ccc-----ccCHHHHHHHHhhCC--CCeEEEECCc-CHHHHHHHHhcCCCEEEE-Echhc
Confidence 11 000 111334444433221 6999999999 56889999998 999999 88875
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.5e-05 Score=71.82 Aligned_cols=58 Identities=19% Similarity=0.143 Sum_probs=51.8
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++.++|++..+++++.+++++.+++++|.+++...+||+|+ |+++|+||..||++..
T Consensus 4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~ 62 (180)
T 3sl7_A 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALD 62 (180)
T ss_dssp CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-
T ss_pred eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhh
Confidence 357888987556899999999999999999999999999998 9999999999998753
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00019 Score=73.00 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=85.5
Q ss_pred cHHHHHHHHH-HcCccEEEEeCCCCC---------------------c-----hhHHHHHHHHHHhCCCceEEEc----c
Q 010640 248 SDKERLEHLV-KAGVNVVVLDSSQGN---------------------S-----SFQIEMIKYAKKTYPELDVIGG----N 296 (505)
Q Consensus 248 ~~~e~~~~li-eaGad~I~i~~~~g~---------------------~-----~~~~~~i~~l~~~~~~~~Vi~g----~ 296 (505)
++.+.++.+. ++|.|.|.|+.++|+ + +...+.++.+|+.++.-+|.++ .
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~ 254 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN 254 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence 3556677788 899999999876531 1 1346777888887643366662 1
Q ss_pred ----c---CC----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHH
Q 010640 297 ----V---VT----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH 365 (505)
Q Consensus 297 ----V---~t----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~d 365 (505)
. .+ .+.++.+.++|+|+|.++.+.-. . . +.|. . +.+..+..++|||+.||| ++.+
T Consensus 255 ~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~---~---~--~~~~-~----~~~ir~~~~iPvi~~G~i-t~~~ 320 (379)
T 3aty_A 255 GVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMV---N---Q--QIGD-V----VAWVRGSYSGVKISNLRY-DFEE 320 (379)
T ss_dssp CGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTT---S---C--CCCC-H----HHHHHTTCCSCEEEESSC-CHHH
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcC---C---C--CccH-H----HHHHHHHCCCcEEEECCC-CHHH
Confidence 0 12 34467777899999998743210 0 1 1232 2 333444567999999999 9999
Q ss_pred HHHHHHhC-CCEEEecccccCC
Q 010640 366 IVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 366 i~kal~lG-A~~V~~G~~f~~~ 386 (505)
+.+++..| ||+|++|+.|+.-
T Consensus 321 a~~~l~~g~aD~V~igR~~l~~ 342 (379)
T 3aty_A 321 ADQQIREGKVDAVAFGAKFIAN 342 (379)
T ss_dssp HHHHHHTTSCSEEEESHHHHHC
T ss_pred HHHHHHcCCCeEEEecHHHHhC
Confidence 99999998 9999999999863
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.74 E-value=2.4e-05 Score=69.79 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=53.1
Q ss_pred ccccccccccC-CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDC-SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~-~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
..++.++|++. .+++++.+++++.++++.|.++++..+||+|+ |+++|+||..|+++..
T Consensus 23 ~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~ 83 (165)
T 3fhm_A 23 ATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAV 83 (165)
T ss_dssp SCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred hcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 46799999852 26899999999999999999999999999998 9999999999998764
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=81.07 Aligned_cols=138 Identities=12% Similarity=0.073 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCC-CceEEEcc------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYP-ELDVIGGN------ 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~-~~~Vi~g~------ 296 (505)
++.+.++.+.++|.|.|.||.++|+ .+...+.++.+|+.++ +.||.++-
T Consensus 150 ~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~ 229 (729)
T 1o94_A 150 FYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVY 229 (729)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCc
Confidence 3556677788899999999987631 1236778888888763 66776631
Q ss_pred ----cC----CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 ----VV----TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 ----V~----t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
.. ..+.++.+.+ |+|++.++.+...............|....+..+.+..+..++|||+.|||.++.++.+
T Consensus 230 ~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~ 308 (729)
T 1o94_A 230 GPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIE 308 (729)
T ss_dssp CTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSSCEECCSCCCCHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCccccHHHHHHHHHHCCCEEEEeCCCCCHHHHHH
Confidence 11 1233444444 89999886432100000000000001100122233344456899999999999999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
++..| ||+|++|++|+.-
T Consensus 309 ~l~~g~aD~V~~gR~~l~~ 327 (729)
T 1o94_A 309 IVTKGYADIIGCARPSIAD 327 (729)
T ss_dssp HHHTTSCSBEEESHHHHHC
T ss_pred HHHCCCCCEEEeCchhhcC
Confidence 99998 9999999988753
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.8e-05 Score=68.75 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=53.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++ +++++++++++.+++++|.+++++.+||+|+ |+++|+||..|+++...
T Consensus 12 ~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~ 72 (164)
T 2pfi_A 12 HVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQ 72 (164)
T ss_dssp SCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred CCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHH
Confidence 4678999998 9999999999999999999999999999983 89999999999998764
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00078 Score=62.33 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHH-HHHHHHcCCCEEEEccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQ-AQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~-a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
...++.+.++|+|.+.+|...+. ....+.++.+++. +.++.+ -+..++++ ++.+.+.|+|++.+..+-.
T Consensus 67 ~~~~~~a~~~Gad~v~vh~~~~~-~~~~~~~~~~~~~--g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~~~~~----- 138 (207)
T 3ajx_A 67 ELEADIAFKAGADLVTVLGSADD-STIAGAVKAAQAH--NKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLD----- 138 (207)
T ss_dssp HHHHHHHHHTTCSEEEEETTSCH-HHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHTTCSEEEEECCHH-----
T ss_pred HHHHHHHHhCCCCEEEEeccCCh-HHHHHHHHHHHHc--CCceEEEEecCCChHHHHHHHHHhCCCEEEEEeccc-----
Confidence 34578888999999999875542 2233445555554 555533 12225555 6677788999984431100
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
... .|.+... ..+++.+.. ++|+++.|||. +..+.+++.+||++|.+|+.+..
T Consensus 139 ~~~--~g~~~~~--~~i~~~~~~-~~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~~ 191 (207)
T 3ajx_A 139 EQA--KPGFDLN--GLLAAGEKA-RVPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIYG 191 (207)
T ss_dssp HHT--STTCCTH--HHHHHHHHH-TSCEEEESSCC-GGGHHHHHHTTCSEEEESHHHHT
T ss_pred ccc--cCCCchH--HHHHHhhCC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEeeeccC
Confidence 001 1111111 233443332 58999999998 78899999999999999999864
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=68.03 Aligned_cols=119 Identities=21% Similarity=0.298 Sum_probs=80.9
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.+++.. . -..+.++.++++|+|+++. .+ .. .+.++..++ + +.+++.| +.|++++..+.++|+|++.+
T Consensus 68 ~~vgagt-v--i~~d~~~~A~~aGAd~v~~--p~-~d---~~v~~~~~~-~-g~~~i~G-~~t~~e~~~A~~~Gad~v~~ 135 (214)
T 1wbh_A 68 AIVGAGT-V--LNPQQLAEVTEAGAQFAIS--PG-LT---EPLLKAATE-G-TIPLIPG-ISTVSELMLGMDYGLKEFKF 135 (214)
T ss_dssp SEEEEES-C--CSHHHHHHHHHHTCSCEEE--SS-CC---HHHHHHHHH-S-SSCEEEE-ESSHHHHHHHHHTTCCEEEE
T ss_pred CEEeeCE-E--EEHHHHHHHHHcCCCEEEc--CC-CC---HHHHHHHHH-h-CCCEEEe-cCCHHHHHHHHHCCCCEEEE
Confidence 4555543 1 1348889999999999975 22 11 233344444 3 6788876 88999999999999999976
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHh-CCCEEEeccccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVL-GASTVMMGSFLA 384 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~f~ 384 (505)
.+ .. .. ..+..+..+ .... ++|+++.||| +...+...+.+ |+++|. |+.+.
T Consensus 136 --Fp-----a~---~~--gG~~~lk~i---~~~~~~ipvvaiGGI-~~~n~~~~l~agg~~~v~-gS~i~ 188 (214)
T 1wbh_A 136 --FP-----AE---AN--GGVKALQAI---AGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIG-GSWLV 188 (214)
T ss_dssp --TT-----TT---TT--THHHHHHHH---HTTCTTCEEEEBSSC-CTTTHHHHHTSTTBSCEE-EGGGS
T ss_pred --ec-----Cc---cc--cCHHHHHHH---hhhCCCCeEEEECCC-CHHHHHHHHhcCCCeEEE-ecccc
Confidence 11 00 00 113334333 3334 6999999999 56889999998 899999 88774
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=68.97 Aligned_cols=119 Identities=16% Similarity=0.241 Sum_probs=80.3
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v 316 (505)
+.+++.. . -..+.++.++++|+|+++. . +.. .+.++..++ + +.+++.| +.|++++..+.++|+|++.+
T Consensus 78 ~~igagt--v-l~~d~~~~A~~aGAd~v~~--p-~~d---~~v~~~~~~-~-g~~~i~G-~~t~~e~~~A~~~Gad~vk~ 145 (225)
T 1mxs_A 78 LCVGAGT--V-LDRSMFAAVEAAGAQFVVT--P-GIT---EDILEAGVD-S-EIPLLPG-ISTPSEIMMGYALGYRRFKL 145 (225)
T ss_dssp SEEEEEC--C-CSHHHHHHHHHHTCSSEEC--S-SCC---HHHHHHHHH-C-SSCEECE-ECSHHHHHHHHTTTCCEEEE
T ss_pred cEEeeCe--E-eeHHHHHHHHHCCCCEEEe--C-CCC---HHHHHHHHH-h-CCCEEEe-eCCHHHHHHHHHCCCCEEEE
Confidence 4555554 2 1448889999999999964 2 222 233333334 3 6788876 89999999999999999966
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHH-hCCCEEEeccccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALV-LGASTVMMGSFLA 384 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~~f~ 384 (505)
.+ ... . ..+..+. +.+... ++|+++.||| +...+...+. .||++|. |+.+.
T Consensus 146 --FP-----a~~---~--~G~~~lk---~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~ 198 (225)
T 1mxs_A 146 --FP-----AEI---S--GGVAAIK---AFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVG-TTWML 198 (225)
T ss_dssp --TT-----HHH---H--THHHHHH---HHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTS
T ss_pred --cc-----Ccc---c--cCHHHHH---HHHhhCCCCeEEEECCC-CHHHHHHHHhccCCEEEE-Echhc
Confidence 11 000 0 0122333 333334 6999999999 6678999999 6999999 98774
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00072 Score=65.55 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=94.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+..+.++.+.+.|++++.+.+..+...+..+.++.+++.. ++||+.+.. .+......+..+|+|+|.+...
T Consensus 73 ~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a------- 144 (272)
T 3qja_A 73 DPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLLLIVA------- 144 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGG-------
T ss_pred CHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEEEecc-------
Confidence 4678888899999999999777666666778888898886 899998765 4777788889999999976421
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. .+ ...+.++.+.++..++.++. .+.|..++.+|+.+||+.++++.+.+.
T Consensus 145 -~-----l~-~~~l~~l~~~a~~lGl~~lv--ev~t~ee~~~A~~~Gad~IGv~~r~l~ 194 (272)
T 3qja_A 145 -A-----LE-QSVLVSMLDRTESLGMTALV--EVHTEQEADRALKAGAKVIGVNARDLM 194 (272)
T ss_dssp -G-----SC-HHHHHHHHHHHHHTTCEEEE--EESSHHHHHHHHHHTCSEEEEESBCTT
T ss_pred -c-----CC-HHHHHHHHHHHHHCCCcEEE--EcCCHHHHHHHHHCCCCEEEECCCccc
Confidence 0 11 22345556667777888888 789999999999999999999865543
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00031 Score=65.84 Aligned_cols=123 Identities=22% Similarity=0.237 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCC--CceEEEc-ccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYP--ELDVIGG-NVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~--~~~Vi~g-~V~t~e----~a~~l~~aGad~I~v 316 (505)
....++.+++.|+|.+.+...- |+...+.+.+..+++... .+++|.- ...+.+ .++.+.++|+|+|+.
T Consensus 73 k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKT 152 (220)
T 1ub3_A 73 KALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKT 152 (220)
T ss_dssp HHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 3456778889999999876643 345667888888888763 3565552 223544 346677899999988
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCC--EEEeccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS--TVMMGSF 382 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~--~V~~G~~ 382 (505)
+.|-+. +..++..+...++.. ..++||-++|||++..|+.+.+.+||+ ++..|..
T Consensus 153 sTGf~~----------~gat~~dv~~m~~~v-g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~ 209 (220)
T 1ub3_A 153 STGFGP----------RGASLEDVALLVRVA-QGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVA 209 (220)
T ss_dssp CCSSSS----------CCCCHHHHHHHHHHH-TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHH
T ss_pred CCCCCC----------CCCCHHHHHHHHHhh-CCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHH
Confidence 743110 112444444444444 356999999999999999999999999 4444443
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00018 Score=70.66 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCccEEEEeC--------CCCC-chhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEE
Q 010640 250 KERLEHLVKAGVNVVVLDS--------SQGN-SSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~--------~~g~-~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v 316 (505)
.+.++.+.++|+.++..-. ..|. .....+.++.+++.. ++||+.+.- +..++++.+..+|+|+|+.
T Consensus 27 ~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~av-~iPV~~K~rig~~~e~qilea~GaD~Id~ 102 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAV-SIPVMAKCRIGHTTEALVLEAIGVDMIDE 102 (330)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHHC-SSCEEEEEETTCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHhc-CCCeEEEEeecchHHHHHHHHcCCCEEeh
Confidence 5678888889999984421 1221 122457778888887 899998744 4578888888899999875
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=2.9e-05 Score=70.27 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=52.4
Q ss_pred ccccccccccCCC--ceEe--cCCCCHHHHHHHHHHCCCCeeEEe--eC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSS--NVSV--PANYDLGQIDEVLEKNDVDFVVLE--KD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~--~~~v--~~~~~l~~a~~~l~~~~i~~lpVv--d~-g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++..+ ++++ .+++++.+|+++|.+++++.+||+ |+ |+++|+||..|+++...
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~ 76 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE 76 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHH
Confidence 4578999998211 7888 999999999999999999999999 67 99999999999988753
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0011 Score=63.34 Aligned_cols=161 Identities=12% Similarity=0.156 Sum_probs=98.6
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
.+..+.++.++++++.+.+.. +|++ +.|..+.+... -....++.+.
T Consensus 68 AL~~g~~~~~~~~~~~~~r~~-~Piv-------lm~Y~N~i~~~--------------------------G~e~F~~~~~ 113 (252)
T 3tha_A 68 ALDQGVDIHSVFELLARIKTK-KALV-------FMVYYNLIFSY--------------------------GLEKFVKKAK 113 (252)
T ss_dssp HHHTTCCHHHHHHHHHHCCCS-SEEE-------EECCHHHHHHH--------------------------CHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHhcC-CCEE-------EEeccCHHHHh--------------------------hHHHHHHHHH
Confidence 345678899999999987654 6664 34444433321 1446788899
Q ss_pred HcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCc
Q 010640 258 KAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR 334 (505)
Q Consensus 258 eaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~ 334 (505)
++|+|.+.+ |.+. +...++.+..++. ++.. ++....+.+..+.+.+.+-.++..-...| .+|...
T Consensus 114 ~aGvdG~IipDLP~---eE~~~~~~~~~~~--Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~G-------vTG~~~ 181 (252)
T 3tha_A 114 SLGICALIVPELSF---EESDDLIKECERY--NIALITLVSVTTPKERVKKLVKHAKGFIYLLASIG-------ITGTKS 181 (252)
T ss_dssp HTTEEEEECTTCCG---GGCHHHHHHHHHT--TCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSC-------SSSCSH
T ss_pred HcCCCEEEeCCCCH---HHHHHHHHHHHHc--CCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCC-------CCCccc
Confidence 999999877 3322 2233444444454 4322 23345568888888888777765421111 111111
Q ss_pred ChHHHHHH-HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 335 GQATAVYK-VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 335 p~~~~l~~-v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+....+.+ +.+..+..++|++..+||.+++++.++.. +||+|.+||+|..
T Consensus 182 ~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk 232 (252)
T 3tha_A 182 VEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVK 232 (252)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence 11111222 23333345799999999999999988766 6999999999864
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0002 Score=66.53 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=68.6
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHC---CCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccC-CCCc
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKN---DVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVG-PDGK 236 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~---~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~ 236 (505)
.+..++++|++ ++++++++.++.++++.|.+. ++..+||+|+ |+++|+||.+|++....... ..+ ....
T Consensus 52 ~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~----v~~im~~~ 125 (205)
T 3kxr_A 52 SENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHEPHEP----LISLLSED 125 (205)
T ss_dssp CTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSCTTSB----GGGGCCSS
T ss_pred CcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCCCcch----HHHHhcCC
Confidence 45679999999 999999999999999999997 8899999998 99999999999987532111 111 1111
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVL 266 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i 266 (505)
. + .+.......+.++.+.+.+...+.|
T Consensus 126 ~-~--~v~~~~~l~~a~~~m~~~~~~~lpV 152 (205)
T 3kxr_A 126 S-R--ALTANTTLLDAAEAIEHSREIELPV 152 (205)
T ss_dssp C-C--CEETTSCHHHHHHHHHTSSCSEEEE
T ss_pred C-e--EECCCCCHHHHHHHHHhcCCCEEEE
Confidence 1 1 1112234556667777777766644
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=69.69 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=82.6
Q ss_pred HHHHHHHHcCccEEEEeCC--CCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc-cCCcceeec
Q 010640 251 ERLEHLVKAGVNVVVLDSS--QGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG-MGSGSICTT 326 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~--~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~-~g~g~~~~~ 326 (505)
+.++.+.++|+|.++++.. .. ....+.++.+++. +..+++- +..|+.+.......++|+|.+. ..+|...
T Consensus 76 ~~i~~~~~aGadgv~vh~e~~~~--~~~~~~~~~i~~~--g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~gg-- 149 (230)
T 1tqj_A 76 KYVEDFAKAGADIISVHVEHNAS--PHLHRTLCQIREL--GKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGG-- 149 (230)
T ss_dssp GTHHHHHHHTCSEEEEECSTTTC--TTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC------
T ss_pred HHHHHHHHcCCCEEEECcccccc--hhHHHHHHHHHHc--CCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCC--
Confidence 4567888999999999875 33 2455677777765 5555441 3345555555555689988663 3333211
Q ss_pred ccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. .+....+.-+.++++...+ .++||.++|||.. ..+.++..+|||++.+||.+..
T Consensus 150 q---~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~ 206 (230)
T 1tqj_A 150 Q---SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN 206 (230)
T ss_dssp C---CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred c---cCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 1 1222245556666655532 2699999999997 8899999999999999999764
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00053 Score=66.25 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=79.8
Q ss_pred HHHHHHHHcCccEEEEeC--CCCCchhHHHHHHHHHHhCC--CceEEEcccC---------CHHH----HHHHHHcCCCE
Q 010640 251 ERLEHLVKAGVNVVVLDS--SQGNSSFQIEMIKYAKKTYP--ELDVIGGNVV---------TMYQ----AQNLIEAGVDG 313 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~--~~g~~~~~~~~i~~l~~~~~--~~~Vi~g~V~---------t~e~----a~~l~~aGad~ 313 (505)
..++.+++.|++.+.+.. ..+....+.+.++.+++... ++|+|+-... +.+. ++.+.++|+|+
T Consensus 96 ~~ve~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~ 175 (263)
T 1w8s_A 96 CSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADA 175 (263)
T ss_dssp SCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCE
Confidence 456778899999997765 33333455666666654321 6777663222 3332 46678899999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCC-cEEecCCCC--CHHHHHHHH----HhCCCEEEecccccCC
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGV-PVIADGGIS--NSGHIVKAL----VLGASTVMMGSFLAGS 386 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~i-pvIa~GGI~--~~~di~kal----~lGA~~V~~G~~f~~~ 386 (505)
|.++.. ..++.+.++++.+ +. ||+++|||. +..+..+.+ .+||+++.+|+.+..+
T Consensus 176 vkt~~~---------------~~~e~~~~~~~~~---~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~ 237 (263)
T 1w8s_A 176 MKIKYT---------------GDPKTFSWAVKVA---GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR 237 (263)
T ss_dssp EEEECC---------------SSHHHHHHHHHHT---TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred EEEcCC---------------CCHHHHHHHHHhC---CCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCC
Confidence 987620 1345555555443 45 999999999 888777666 8999999999987654
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00021 Score=67.59 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=80.1
Q ss_pred HHHHHHHHHHcCccEEEEeCC--CCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEE-ccCCccee
Q 010640 249 DKERLEHLVKAGVNVVVLDSS--QGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRV-GMGSGSIC 324 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~--~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v-~~g~g~~~ 324 (505)
..+.++.+.++|+|.+.+|.. .+ ....+.++.+++. +..+++. ...|..+.......++|++.+ +.++|..
T Consensus 80 ~~~~v~~~~~~Gad~v~vh~~~~~~--~~~~~~~~~~~~~--g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~- 154 (230)
T 1rpx_A 80 PDQRVPDFIKAGADIVSVHCEQSST--IHLHRTINQIKSL--GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFG- 154 (230)
T ss_dssp HHHHHHHHHHTTCSEEEEECSTTTC--SCHHHHHHHHHHT--TSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCS-
T ss_pred HHHHHHHHHHcCCCEEEEEecCccc--hhHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCC-
Confidence 446788888999999999876 43 2345666666665 5555442 113433333344578998854 3333211
Q ss_pred ecccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
+..+ .| ..+.-+..+++.... .++|++++|||. +..+.+++.+||++|.+|+.+..+
T Consensus 155 -g~~~-~~--~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a 213 (230)
T 1rpx_A 155 -GQSF-IE--SQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp -SCCC-CT--THHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTS
T ss_pred -Cccc-cH--HHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCC
Confidence 1111 11 233444455544421 268999999998 788989999999999999998643
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.4e-05 Score=67.23 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=51.6
Q ss_pred cccccccccC----CCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 164 VKIFDYMRDC----SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 164 ~~v~~im~~~----~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
.+++++|++. .+++++.+++++.+|++.|.+++...+||+|+|+++|+||..|+++...
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~~~~~~Givt~~dl~~~~~ 69 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDDIAGIVTERDYARKVV 69 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEESSSSEEEEEEHHHHHHHSG
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEeeCCEEEEEEEHHHHHHHHH
Confidence 3688999852 2679999999999999999999999999965599999999999998753
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=65.98 Aligned_cols=81 Identities=14% Similarity=0.039 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCc-ChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhC
Q 010640 297 VVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR-GQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLG 373 (505)
Q Consensus 297 V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~-p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lG 373 (505)
+.|.+++..+. .|+|++.++. +..+....+.+. -.+..+.. .+.. .++||++.|||. +.++..++.+|
T Consensus 95 ~~t~~e~~~A~-~GaDyv~~g~----vf~t~sk~~~~~~~g~~~l~~---~~~~~~~~iPviaiGGI~-~~nv~~~~~~G 165 (210)
T 3ceu_A 95 CHSVEEVKNRK-HFYDYVFMSP----IYDSISKVNYYSTYTAEELRE---AQKAKIIDSKVMALGGIN-EDNLLEIKDFG 165 (210)
T ss_dssp ECSHHHHHTTG-GGSSEEEECC----CC---------CCCCHHHHHH---HHHTTCSSTTEEEESSCC-TTTHHHHHHTT
T ss_pred cCCHHHHHHHh-hCCCEEEECC----cCCCCCCCCCCCCCCHHHHHH---HHHhcCCCCCEEEECCCC-HHHHHHHHHhC
Confidence 44677777766 7888876641 111111111110 11233333 3333 469999999998 89999999999
Q ss_pred CCEEEecccccCC
Q 010640 374 ASTVMMGSFLAGS 386 (505)
Q Consensus 374 A~~V~~G~~f~~~ 386 (505)
|++|.+++.+...
T Consensus 166 a~gVav~s~i~~~ 178 (210)
T 3ceu_A 166 FGGAVVLGDLWNK 178 (210)
T ss_dssp CSEEEESHHHHTT
T ss_pred CCEEEEhHHhHcC
Confidence 9999999998654
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=80.35 Aligned_cols=135 Identities=17% Similarity=0.176 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------c-------hhHHHHHHHHHHhCC-CceEEEcc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------S-------SFQIEMIKYAKKTYP-ELDVIGGN----- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------~-------~~~~~~i~~l~~~~~-~~~Vi~g~----- 296 (505)
++.+.+..+.++|.|.|.||.++|+ . +...+.++.+++.++ +.||.++-
T Consensus 157 ~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~ 236 (690)
T 3k30_A 157 WHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEE 236 (690)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 3556677788899999999988776 0 135678888888763 56776631
Q ss_pred ---cCCHH----HHHHHHHcCCCEEEEccCCcce-eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 ---VVTMY----QAQNLIEAGVDGLRVGMGSGSI-CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 ---V~t~e----~a~~l~~aGad~I~v~~g~g~~-~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
-.+.+ .++.+.+ |+|++.++.+.-.. .........+. ... .+.+..+..++|||+.|||.++.++.+
T Consensus 237 ~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~-~~~---~~~~i~~~~~~pvi~~G~i~~~~~a~~ 311 (690)
T 3k30_A 237 IDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGR-QEE---FVAGLKKLTTKPVVGVGRFTSPDAMVR 311 (690)
T ss_dssp STTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTT-THH---HHTTSGGGCSSCEEECSCCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccc-cHH---HHHHHHHHcCCeEEEeCCCCCHHHHHH
Confidence 01233 3455555 89999887432100 00000111110 111 222333446799999999999999999
Q ss_pred HHHhC-CCEEEecccccCCC
Q 010640 369 ALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~~ 387 (505)
++..| ||+|++|++|+.-.
T Consensus 312 ~l~~g~~d~v~~gR~~~~~P 331 (690)
T 3k30_A 312 QIKAGILDLIGAARPSIADP 331 (690)
T ss_dssp HHHTTSCSEEEESHHHHHCT
T ss_pred HHHCCCcceEEEcHHhHhCc
Confidence 99998 99999999987543
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00029 Score=66.18 Aligned_cols=125 Identities=21% Similarity=0.207 Sum_probs=75.0
Q ss_pred HHHHHHcCccEEEEeCCC-CCc-hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec---c
Q 010640 253 LEHLVKAGVNVVVLDSSQ-GNS-SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT---Q 327 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~-g~~-~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~---~ 327 (505)
++.+.+.|+|.+.+..+. -.+ ....+.++..++. ++.+++ .+.+.++...+.+.|.++|-+...- .+.++ +
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~--Gl~~iv-~v~~~~e~~~~~~~~~~~i~~~~~~-~iGtG~~~~ 150 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNL--GLETIV-CTNNINTSKAVAALSPDCIAVEPPE-LIGTGIPVS 150 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHH--TCEEEE-EESSSHHHHHHTTTCCSEEEECCCC----------
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHC--CCeEEE-EeCCchHHHHHHhCCCCEEEEEecc-ccccCCCCc
Confidence 466788999999883321 111 2344555555555 666655 4565566677777888877553100 00001 0
Q ss_pred cccccCcChHH-HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 328 EVCAVGRGQAT-AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 328 ~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
... ...+. ....+++.. .++||++.|||.++.++..+...|||+|.+|+.++.+
T Consensus 151 t~~---~~~~~~~~~~ir~~~--~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~ 205 (219)
T 2h6r_A 151 KAN---PEVVEGTVRAVKEIN--KDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA 205 (219)
T ss_dssp --------CSHHHHHHHHHHC--TTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred cCC---HHHHHHHHHHHHhcc--CCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence 000 00012 222222221 1689999999999999999999999999999998754
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00045 Score=66.59 Aligned_cols=173 Identities=15% Similarity=0.072 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGV 261 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGa 261 (505)
.+..+.++.+.+.+.+.+-++|= + . -.++++.... .....+.++..+. . . .++.++ +|+
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~-----~-n~~~i~~i~~--------~~~~pv~vgGGir-~--~--~~~~~l-~Ga 97 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP-----N-NDDAAREALQ--------ESPQFLQVGGGIN-D--T--NCLEWL-KWA 97 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS-----S-CHHHHHHHHH--------HSTTTSEEESSCC-T--T--THHHHT-TTC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC-----C-CHHHHHHHHh--------cCCceEEEeCCCC-H--H--HHHHHh-cCC
Confidence 45667778888889999988873 3 1 2233333211 1122355666663 2 2 555666 999
Q ss_pred cEEEEeCC-CCC-chhHHHHHHHHHHhCC-C-ceEEE--c-------cc-----------CCH-HHHHHHHHcCCCEEEE
Q 010640 262 NVVVLDSS-QGN-SSFQIEMIKYAKKTYP-E-LDVIG--G-------NV-----------VTM-YQAQNLIEAGVDGLRV 316 (505)
Q Consensus 262 d~I~i~~~-~g~-~~~~~~~i~~l~~~~~-~-~~Vi~--g-------~V-----------~t~-e~a~~l~~aGad~I~v 316 (505)
+.+.+.+. ..+ ...-.+.++.+.+.+. . +.+.+ + .| .-. +.++.+.++ ++.+.+
T Consensus 98 ~~Viigs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~ 176 (260)
T 2agk_A 98 SKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLI 176 (260)
T ss_dssp SCEEECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEE
T ss_pred CEEEECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEE
Confidence 99988664 122 0000234444444432 1 11111 1 11 113 788888889 998866
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHh-hcCCcEEecCCCCCHHHHHHHHHh--CCCEEEecccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAA-QSGVPVIADGGISNSGHIVKALVL--GASTVMMGSFL 383 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~-~~~ipvIa~GGI~~~~di~kal~l--GA~~V~~G~~f 383 (505)
- ..++.-...| |.++.+..+.+.+. ..++|||++|||.+..|+.+++.+ ||++|++|+.|
T Consensus 177 t------~i~~dG~~~G-~d~eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al 239 (260)
T 2agk_A 177 H------AADVEGLCGG-IDELLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL 239 (260)
T ss_dssp E------C-------CC-CCHHHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred E------eeccccCcCC-CCHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence 1 1111111112 45666666554321 006999999999999999999998 99999999986
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=97.54 E-value=8.8e-05 Score=71.01 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=56.6
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.++.+.++|++.|.+..-. ....+.+ +....+ .+.++..++||++.|||+++.|+.+++..|||+|.
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~------~~~~~~~-~~~~~i---~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ 106 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSID------RDGTKSG-YDTEMI---RFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVS 106 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETT------TTTCSSC-CCHHHH---HHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEC
T ss_pred HHHHHHHHHHcCCCEEEEEecC------cccCCCc-ccHHHH---HHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 4678888999999999764110 0001111 233333 44555678999999999999999999999999999
Q ss_pred ecccccCC
Q 010640 379 MGSFLAGS 386 (505)
Q Consensus 379 ~G~~f~~~ 386 (505)
+|+.++..
T Consensus 107 ig~~~l~d 114 (247)
T 3tdn_A 107 INTAAVEN 114 (247)
T ss_dssp CSHHHHHC
T ss_pred hhhHHhhC
Confidence 99987643
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00063 Score=65.25 Aligned_cols=129 Identities=22% Similarity=0.187 Sum_probs=81.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCC---------------CCCc-hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSS---------------QGNS-SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGV 311 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~---------------~g~~-~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGa 311 (505)
.....++.+.+.|+..+ ++.+ ++.. ....+.++..++. ++.-++ -+.+.++++.+.++|+
T Consensus 109 ~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~--gL~Ti~-~v~~~eeA~amA~agp 184 (286)
T 2p10_A 109 VMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL--DLLTTP-YVFSPEDAVAMAKAGA 184 (286)
T ss_dssp CHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCEECC-EECSHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHC--CCeEEE-ecCCHHHHHHHHHcCC
Confidence 35566788899999988 6543 1211 2345555555555 554433 5789999999999999
Q ss_pred CEEEEccCCcceeecccccccCc--Ch---HHHHHHHHHHHhhc--CCcEEecC-CCCCHHHHHHHHHh--CCCEEEecc
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGR--GQ---ATAVYKVSSIAAQS--GVPVIADG-GISNSGHIVKALVL--GASTVMMGS 381 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~--p~---~~~l~~v~~~~~~~--~ipvIa~G-GI~~~~di~kal~l--GA~~V~~G~ 381 (505)
|+|.+-.+- ++....|.+. .. .+.+.++.+++++. ++.|+..| ||.++.|+..++.+ |++++..++
T Consensus 185 DiI~~h~gl----T~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 185 DILVCHMGL----TTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp SEEEEECSC----C---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred CEEEECCCC----CCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeeh
Confidence 999874321 1111222221 11 33444455555444 45566554 99999999999999 999999998
Q ss_pred ccc
Q 010640 382 FLA 384 (505)
Q Consensus 382 ~f~ 384 (505)
.+.
T Consensus 261 sie 263 (286)
T 2p10_A 261 SME 263 (286)
T ss_dssp HHH
T ss_pred hhh
Confidence 763
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.47 E-value=0.001 Score=65.12 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=76.0
Q ss_pred HHHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhC--CCceEEEccc------CCHH----HHHHHHHcCCCEEEEc
Q 010640 252 RLEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTY--PELDVIGGNV------VTMY----QAQNLIEAGVDGLRVG 317 (505)
Q Consensus 252 ~~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~--~~~~Vi~g~V------~t~e----~a~~l~~aGad~I~v~ 317 (505)
.++.+++.|++.+.++...|. ....++.+..+++.. .++|+|+-.. .+.+ .++.+.++|+|+|.++
T Consensus 130 ~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~ 209 (295)
T 3glc_A 130 SMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY 209 (295)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 466788999999988766542 234555555555432 2678877211 1323 5677889999999875
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHH-----HHHHHHHhCCCEEEecccccCC
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG-----HIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~-----di~kal~lGA~~V~~G~~f~~~ 386 (505)
. + + ..+.++ +....+||+++||+.... .+..|+.+||+++.+|+.+..+
T Consensus 210 ~-------t----~------e~~~~v---v~~~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~ 263 (295)
T 3glc_A 210 Y-------V----E------KGFERI---VAGCPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQS 263 (295)
T ss_dssp C-------C----T------TTHHHH---HHTCSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred C-------C----H------HHHHHH---HHhCCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC
Confidence 1 1 0 112333 333569999999999543 5667889999999999987654
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=8.2e-05 Score=79.34 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=53.8
Q ss_pred ccccccccccCCCceEecCC-CCHHHHHHHHHHCCCCeeEEee-C-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPAN-YDLGQIDEVLEKNDVDFVVLEK-D-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~-~~l~~a~~~l~~~~i~~lpVvd-~-g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++ +++++.++ +++.+++++|.++++..+||+| + ++++|+||..||++...
T Consensus 383 ~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~ 443 (527)
T 3pc3_A 383 SLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIV 443 (527)
T ss_dssp TSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHH
T ss_pred CCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHH
Confidence 4689999998 99999999 9999999999999999999999 6 99999999999997653
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0003 Score=67.28 Aligned_cols=77 Identities=25% Similarity=0.223 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.++.+.++|+|+|.+.-. ...+.+....+..+.+.++..++|++..|||.+..++.+++.+|||+|.+
T Consensus 34 ~~~a~~~~~~Gad~i~v~d~----------~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 34 VEAARAYDEAGADELVFLDI----------SATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp HHHHHHHHHHTCSCEEEEEC----------CSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEEcC----------CccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 46678888999999866410 00111222333445566666789999999999999999999999999999
Q ss_pred cccccCC
Q 010640 380 GSFLAGS 386 (505)
Q Consensus 380 G~~f~~~ 386 (505)
|+.++..
T Consensus 104 g~~~l~~ 110 (252)
T 1ka9_F 104 NSAAVRR 110 (252)
T ss_dssp CHHHHHC
T ss_pred ChHHHhC
Confidence 9987653
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.002 Score=60.78 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=80.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cc--cC---------------------CHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GN--VV---------------------TMY 301 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~--V~---------------------t~e 301 (505)
...+.++.+.++|+|+|++..+.|.. ..+.+.++.+|+ . ++|++. .. .. ...
T Consensus 21 ~t~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~ir~-~-~~Pivl~~y~~n~i~~gvDg~iipdLp~ee~~~~~~g~ 98 (234)
T 2f6u_A 21 NTDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQ-Y-GLPIVVEPSDPSNVVYDVDYLFVPTVLNSADGDWITGK 98 (234)
T ss_dssp CCHHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHHHTT-S-CCCEEECCSSCCCCCCCSSEEEEEEETTBSBGGGTTHH
T ss_pred ccHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhcC-C-CCCEEEecCCcchhhcCCCEEEEcccCCCCCHHHHhhh
Confidence 45677889999999999998877755 568888888887 3 677655 11 00 111
Q ss_pred HHHHH-------HHcC-----CCEEE----EccCCcc--------eee------------------ccc-ccccCc-ChH
Q 010640 302 QAQNL-------IEAG-----VDGLR----VGMGSGS--------ICT------------------TQE-VCAVGR-GQA 337 (505)
Q Consensus 302 ~a~~l-------~~aG-----ad~I~----v~~g~g~--------~~~------------------~~~-~~g~g~-p~~ 337 (505)
....+ .+.| .+.|- +-...+. ... ... ..+.|. +..
T Consensus 99 ~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~~g~~~l~~~~Vyl~~~G~~~~~ 178 (234)
T 2f6u_A 99 HAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNP 178 (234)
T ss_dssp HHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEECTTSCCCH
T ss_pred HHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHHhhhhhcCCCEEEEeCCCCcchH
Confidence 11222 3345 55544 2111110 000 000 011122 233
Q ss_pred HHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 338 TAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 338 ~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+..++ +.. ++|++..|||++++++.+++. |||+|.+||++.
T Consensus 179 ~~i~~i~---~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v 222 (234)
T 2f6u_A 179 ELVAEVK---KVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIY 222 (234)
T ss_dssp HHHHHHH---HHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHH
T ss_pred HHHHHHH---HhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHH
Confidence 3444443 345 799999999999999999999 999999999985
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0042 Score=59.19 Aligned_cols=121 Identities=19% Similarity=0.163 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCCce--EEEc-ccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPELD--VIGG-NVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~~~--Vi~g-~V~t~e----~a~~l~~aGad~I~v 316 (505)
-...++.+++.|+|-|.+...- |+...+.+.++.+++...+.+ +|.= ...+.+ .++.+.++|+|+|+.
T Consensus 113 Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKT 192 (260)
T 3r12_A 113 KAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKT 192 (260)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEc
Confidence 3445677888999999776543 444667788888888765443 3431 223443 345567899999988
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+.|-+. +..++..+...++... .+++|-++|||++..|+.+.+.+||+-++..
T Consensus 193 STGf~~----------~GAT~edV~lm~~~vg-~~v~VKaAGGIrt~~~al~mi~aGA~RiGtS 245 (260)
T 3r12_A 193 STGFGT----------GGATAEDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADRIGTS 245 (260)
T ss_dssp CCSSSS----------CCCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCCCC----------CCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHcCCceeecc
Confidence 743110 1234444444444443 4699999999999999999999999955443
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=71.20 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=52.8
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHC-----CCCeeEEeeC-CeeeeEEeechhhhh
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKN-----DVDFVVLEKD-GERLDVVTREDVERL 220 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~-----~i~~lpVvd~-g~l~GiIt~~dil~~ 220 (505)
.+.+++++|++ ++++++++.++.++++.|.++ ++..+||+|+ |+++|+||.+|++..
T Consensus 135 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~ 197 (286)
T 2oux_A 135 EDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN 197 (286)
T ss_dssp CTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS
T ss_pred ChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC
Confidence 46789999998 999999999999999999997 7888999998 999999999999875
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00025 Score=77.31 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=55.8
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHH-HCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLE-KNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~-~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.+.+++++|+++.+++++++++++.++.+.|. +++.+.+||+|+ ++++|+||++|+++....
T Consensus 451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~ 514 (632)
T 3org_A 451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQH 514 (632)
T ss_dssp TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTT
T ss_pred ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHH
Confidence 45689999995449999999999999999999 799999999998 999999999999987643
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0015 Score=69.31 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=59.3
Q ss_pred ccCCHHHHHHHHHcC---CCEEEEccCCcceeecccccccC--cChHHHHHHHHHHHhh---cCCcEEecCCCCCHHHHH
Q 010640 296 NVVTMYQAQNLIEAG---VDGLRVGMGSGSICTTQEVCAVG--RGQATAVYKVSSIAAQ---SGVPVIADGGISNSGHIV 367 (505)
Q Consensus 296 ~V~t~e~a~~l~~aG---ad~I~v~~g~g~~~~~~~~~g~g--~p~~~~l~~v~~~~~~---~~ipvIa~GGI~~~~di~ 367 (505)
.+.+.++++.+.+.| +|+|-++ .+..+....+.. ...+..+.++.+.++. .++|+++.||| +..++.
T Consensus 114 S~ht~eea~~A~~~G~~~aDYv~~G----pvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~ 188 (540)
T 3nl6_A 114 SVGFPEEVDELSKMGPDMVDYIGVG----TLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIE 188 (540)
T ss_dssp EECSHHHHHHHHHTCC--CCEEEES----CCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHH
T ss_pred ECCCHHHHHHHHHcCCCCCCEEEEc----CCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHH
Confidence 566899999999999 9999775 122221111111 1124455555554422 36999999999 889999
Q ss_pred HHHH--------hCCCEEEecccccCC
Q 010640 368 KALV--------LGASTVMMGSFLAGS 386 (505)
Q Consensus 368 kal~--------lGA~~V~~G~~f~~~ 386 (505)
+.+. +||++|.+++.+..+
T Consensus 189 ~v~~~~~~~g~~~GadgvAVvsaI~~a 215 (540)
T 3nl6_A 189 RVLYQCVSSNGKRSLDGICVVSDIIAS 215 (540)
T ss_dssp HHHHHCBCTTSSCBCSCEEESHHHHTC
T ss_pred HHHHhhcccccccCceEEEEeHHHhcC
Confidence 9998 899999999998754
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00089 Score=63.17 Aligned_cols=123 Identities=22% Similarity=0.173 Sum_probs=78.8
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhH-HHHHHHHHHhCCCceEEEc-ccCCH-HHHHHHHHc--CCCEEEEc-cCCccee
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQ-IEMIKYAKKTYPELDVIGG-NVVTM-YQAQNLIEA--GVDGLRVG-MGSGSIC 324 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~-~~~i~~l~~~~~~~~Vi~g-~V~t~-e~a~~l~~a--Gad~I~v~-~g~g~~~ 324 (505)
+.++.+.++|+|.+.+|..... .. .+.++.+++. ++.+++. +..|. +..+.+... ++|++.+. ..+|...
T Consensus 78 ~~i~~~~~agad~v~vH~~~~~--~~~~~~~~~i~~~--g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g 153 (228)
T 1h1y_A 78 DYVEPLAKAGASGFTFHIEVSR--DNWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGG 153 (228)
T ss_dssp GGHHHHHHHTCSEEEEEGGGCT--TTHHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSS
T ss_pred HHHHHHHHcCCCEEEECCCCcc--cHHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCc
Confidence 4577778899999999875432 23 5667777665 5655542 22333 344455555 99999874 3322111
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.. +....+.-+.++++... ++|++++|||.. ..+.+++.+|||.+.+|+.+..
T Consensus 154 --~~---~~~~~l~~i~~~~~~~~--~~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~ 206 (228)
T 1h1y_A 154 --QK---FMPEMMEKVRALRKKYP--SLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFG 206 (228)
T ss_dssp --CC---CCGGGHHHHHHHHHHCT--TSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHT
T ss_pred --cc---CCHHHHHHHHHHHHhcC--CCCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence 11 11123444545544331 689999999987 7888999999999999999764
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0025 Score=60.42 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=81.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cc---cC---------------C-----H
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GN---VV---------------T-----M 300 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~---V~---------------t-----~ 300 (505)
+...+.++.+.++|+|++++..+.|.+ ....+.++.+|+ . ++|++. +. +. + .
T Consensus 20 ~~t~~~~~~l~~~GaD~ielG~S~Gvt~~~~~~~v~~ir~-~-~~Pivlm~y~~n~i~~G~dg~iiPdLp~ee~~~~~~g 97 (240)
T 1viz_A 20 DLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRR-F-LVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVG 97 (240)
T ss_dssp CCCHHHHHHHHTSCCSEEEECC----CHHHHHHHHHHHTT-S-SSCEEEECSCGGGCCSCCSEEEEEEETTBSSGGGTTH
T ss_pred cccHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhhC-c-CCCEEEecCccccccCCCCEEEEcccCcccChhhhcc
Confidence 345677889999999999998877765 448889999988 4 788874 11 10 1 1
Q ss_pred HHHHHHHHcC-----CCEEE----EccCCcc-----------------------------eeecccccccCc-ChHHHHH
Q 010640 301 YQAQNLIEAG-----VDGLR----VGMGSGS-----------------------------ICTTQEVCAVGR-GQATAVY 341 (505)
Q Consensus 301 e~a~~l~~aG-----ad~I~----v~~g~g~-----------------------------~~~~~~~~g~g~-p~~~~l~ 341 (505)
.+...+.+.| .+.|- +-...+. ..+. .+.|. +....+.
T Consensus 98 ~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl---~s~G~~~~~~~i~ 174 (240)
T 1viz_A 98 MHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYL---EYSGVLGDIEAVK 174 (240)
T ss_dssp HHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEE---ECTTSCCCHHHHH
T ss_pred hhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEE---eCCCccChHHHHH
Confidence 1234455566 56554 2110000 0000 11122 2333343
Q ss_pred HHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 342 KVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 342 ~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+ .+.. ++|++..|||++++++.+++. |||+|.+||++..
T Consensus 175 ~i---~~~~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~ 215 (240)
T 1viz_A 175 KT---KAVLETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYE 215 (240)
T ss_dssp HH---HHTCSSSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHH
T ss_pred HH---HHhcCCCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHh
Confidence 33 3445 799999999999999999988 9999999999863
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0008 Score=65.38 Aligned_cols=98 Identities=11% Similarity=0.111 Sum_probs=69.3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHC-----CCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCC
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKN-----DVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDG 235 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~-----~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~ 235 (505)
...++.++|++ ++++++++.++.++++.|.++ ++..+||+|+ |+++|+||.+|++....... ..+.-.
T Consensus 133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~~~~~----v~~im~ 206 (278)
T 2yvy_A 133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTR----VAEIMN 206 (278)
T ss_dssp CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSCTTCB----STTTSB
T ss_pred CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCCCCCc----HHHHhC
Confidence 45679999998 999999999999999999997 7899999998 99999999999997532110 111100
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEe
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
+-.+ .+.......+.++.+.+.+...+.|.
T Consensus 207 ~~~~--~v~~~~~l~~a~~~m~~~~~~~lpVv 236 (278)
T 2yvy_A 207 PKVV--YVRTDTDQEEVARLMADYDFTVLPVV 236 (278)
T ss_dssp SSCC--CEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred CCCe--EEeCCCCHHHHHHHHHhcCCCEEEEE
Confidence 0011 11123345667777777777666553
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0031 Score=60.94 Aligned_cols=124 Identities=13% Similarity=0.120 Sum_probs=92.5
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
..+..+.+..+.+.|++++.+-+..+...+..+.++.+++.. ++||+.+.. .+......+..+|||+|.+...
T Consensus 78 ~~dp~~~A~~y~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v-~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a----- 151 (272)
T 3tsm_A 78 DFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQAC-SLPALRKDFLFDPYQVYEARSWGADCILIIMA----- 151 (272)
T ss_dssp SCCHHHHHHHHHHTTCSEEEEECCSTTTCCCHHHHHHHHHTS-SSCEEEESCCCSTHHHHHHHHTTCSEEEEETT-----
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccccccCCCHHHHHHHHHhc-CCCEEECCccCCHHHHHHHHHcCCCEEEEccc-----
Confidence 345778899999999999988655444434567778888876 899998864 5667788899999999976421
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.+ + ...+.+..+.++..++.+++ =+.|..++.+|+.+||+.+++..+-+.+
T Consensus 152 ---~L-----~-~~~l~~l~~~a~~lGl~~lv--evh~~eEl~~A~~~ga~iIGinnr~l~t 202 (272)
T 3tsm_A 152 ---SV-----D-DDLAKELEDTAFALGMDALI--EVHDEAEMERALKLSSRLLGVNNRNLRS 202 (272)
T ss_dssp ---TS-----C-HHHHHHHHHHHHHTTCEEEE--EECSHHHHHHHTTSCCSEEEEECBCTTT
T ss_pred ---cc-----C-HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHhcCCCEEEECCCCCcc
Confidence 11 1 23355556667777888887 6789999999999999999988665443
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0032 Score=57.36 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=34.7
Q ss_pred HHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 346 IAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 346 ~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.++..++|||+.|+|++.+|+.+|+.+||++|..|+..+
T Consensus 145 i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~L 183 (192)
T 3kts_A 145 MTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHL 183 (192)
T ss_dssp HHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGG
T ss_pred HHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHH
Confidence 344568999999999999999999999999999998765
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.005 Score=57.80 Aligned_cols=121 Identities=20% Similarity=0.179 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCCce--EEEc-ccC----CHHH----HHHHHHcCCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPELD--VIGG-NVV----TMYQ----AQNLIEAGVD 312 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~~~--Vi~g-~V~----t~e~----a~~l~~aGad 312 (505)
-...++.+++.|+|-|.+...- |+...+.+.++.+++...+.+ +|.= ... +.+. ++.+.++|+|
T Consensus 82 K~~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGAD 161 (231)
T 3ndo_A 82 KATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGAD 161 (231)
T ss_dssp HHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcC
Confidence 3446677889999999776543 455667888888888875443 3331 122 4443 3556679999
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+|+.+.|-+ ..+..++..+...++... .+++|-++|||++..|..+.+.+||+-++.
T Consensus 162 fVKTSTGf~---------~~~gAt~edv~lm~~~v~-~~v~VKaaGGIrt~~~a~~~i~aGa~RiGt 218 (231)
T 3ndo_A 162 FVKTSTGFH---------PSGGASVQAVEIMARTVG-ERLGVKASGGIRTAEQAAAMLDAGATRLGL 218 (231)
T ss_dssp EEECCCSCC---------TTCSCCHHHHHHHHHHHT-TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred EEEcCCCCC---------CCCCCCHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHhcchhccc
Confidence 998874311 011234555555555544 469999999999999999999999995443
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.006 Score=57.20 Aligned_cols=125 Identities=9% Similarity=-0.005 Sum_probs=78.3
Q ss_pred HHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCC--ceEEEc-ccCCHH----HHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPE--LDVIGG-NVVTMY----QAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~--~~Vi~g-~V~t~e----~a~~l~~aGad~I~v~ 317 (505)
...++. ++.|+|.|.+... .|+...+.+.++.+++..++ +++|+- ...+.+ .++.+.++|+|+|+.+
T Consensus 70 ~~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTS 148 (226)
T 1vcv_A 70 IALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSS 148 (226)
T ss_dssp HHHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 355667 8999999977653 34556678888888887643 455552 223544 3466778999999987
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHh---CCC
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVL---GAS 375 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~l---GA~ 375 (505)
.|-+...+.......+..++..+...++..+. .+++|-++|||++..|+.+.+.+ ||+
T Consensus 149 TGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 149 TGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGED 211 (226)
T ss_dssp CSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred CCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 43220000000111122344444444444222 34999999999999999999999 988
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00087 Score=64.05 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.++.+.++|+|.+.+....+ .+......+..+.+.++..++|++..|||.++.++.+++.+|||+|.+
T Consensus 33 ~~~a~~~~~~Gad~i~v~d~~~----------~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 33 VELGKFYSEIGIDELVFLDITA----------SVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEESSC----------SSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCch----------hhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4567888899999987642111 111111223334455556789999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
|+..+.
T Consensus 103 g~~~l~ 108 (253)
T 1thf_D 103 NTAAVE 108 (253)
T ss_dssp SHHHHH
T ss_pred ChHHHh
Confidence 998764
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0019 Score=60.63 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.1
Q ss_pred Hhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 347 AAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 347 ~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
++.. ++|++..|||++++++.+++ .|||+|.+||++..
T Consensus 175 ~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~ 213 (228)
T 3vzx_A 175 KAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE 213 (228)
T ss_dssp HHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH
T ss_pred HHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc
Confidence 3345 69999999999999999988 79999999999853
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0025 Score=60.13 Aligned_cols=121 Identities=16% Similarity=0.129 Sum_probs=76.4
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
..++.+.++|+|.+.+|..... .....++.+++. ++.+.+ ..-...+..+.+.. .+|.|.+ +..+|... .
T Consensus 78 ~~i~~~~~aGad~itvH~Ea~~--~~~~~i~~i~~~--G~k~gval~p~t~~e~l~~~l~-~~D~Vl~msv~pGf~G--q 150 (228)
T 3ovp_A 78 QWVKPMAVAGANQYTFHLEATE--NPGALIKDIREN--GMKVGLAIKPGTSVEYLAPWAN-QIDMALVMTVEPGFGG--Q 150 (228)
T ss_dssp GGHHHHHHHTCSEEEEEGGGCS--CHHHHHHHHHHT--TCEEEEEECTTSCGGGTGGGGG-GCSEEEEESSCTTTCS--C
T ss_pred HHHHHHHHcCCCEEEEccCCch--hHHHHHHHHHHc--CCCEEEEEcCCCCHHHHHHHhc-cCCeEEEeeecCCCCC--c
Confidence 4567788999999999875432 356777888776 555433 22233444444433 4888765 33333211 1
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. |....+.-+..+++.. .+.+|.++||| ++..+..+..+|||.+.+|+.+.
T Consensus 151 ~---f~~~~l~ki~~lr~~~--~~~~I~VdGGI-~~~t~~~~~~aGAd~~VvGsaIf 201 (228)
T 3ovp_A 151 K---FMEDMMPKVHWLRTQF--PSLDIEVDGGV-GPDTVHKCAEAGANMIVSGSAIM 201 (228)
T ss_dssp C---CCGGGHHHHHHHHHHC--TTCEEEEESSC-STTTHHHHHHHTCCEEEESHHHH
T ss_pred c---cCHHHHHHHHHHHHhc--CCCCEEEeCCc-CHHHHHHHHHcCCCEEEEeHHHh
Confidence 1 1112334444444432 24899999999 58999999999999999999864
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0024 Score=62.46 Aligned_cols=89 Identities=11% Similarity=0.130 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
+.+.++..++.+|..++++ ++.+.++++.+.++|+|+|.+.+ .++..+.+..+... .+++|.
T Consensus 195 i~~ai~~~r~~~~~~kI~v-ev~tlee~~eA~~aGaD~I~ld~----------------~~~e~l~~~v~~~~-~~~~I~ 256 (296)
T 1qap_A 195 VRQAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN----------------FNTDQMREAVKRVN-GQARLE 256 (296)
T ss_dssp HHHHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS----------------CCHHHHHHHHHTTC-TTCCEE
T ss_pred HHHHHHHHHHhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhC-CCCeEE
Confidence 4567778888876546666 78899999999999999997753 12344444444332 259999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++||| +...+.+....|+|.+.+|+..
T Consensus 257 ASGGI-t~~~i~~~a~~GvD~isvGsli 283 (296)
T 1qap_A 257 VSGNV-TAETLREFAETGVDFISVGALT 283 (296)
T ss_dssp ECCCS-CHHHHHHHHHTTCSEEECSHHH
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEeHHH
Confidence 99999 9999999999999999999854
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0011 Score=64.41 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCC
Q 010640 276 QIEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGV 352 (505)
Q Consensus 276 ~~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~i 352 (505)
..+.++..++.+|. .++++ ++.+.++++.+.++|+|+|.+.+ ++ +..+..+.+..+. .++
T Consensus 168 ~~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~-------------~~---~~~l~~~v~~l~~~~~~~ 230 (273)
T 2b7n_A 168 LKSFLTHARKNLPFTAKIEI-ECESFEEAKNAMNAGADIVMCDN-------------LS---VLETKEIAAYRDAHYPFV 230 (273)
T ss_dssp HHHHHHHHGGGSCTTCCEEE-EESSHHHHHHHHHHTCSEEEEET-------------CC---HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCceEEE-EcCCHHHHHHHHHcCCCEEEECC-------------CC---HHHHHHHHHHhhccCCCc
Confidence 35677777887754 46666 88899999999999999998753 11 2344444443332 138
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
||.++||| +...+.+....|||.+.+|+.+.
T Consensus 231 ~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~ 261 (273)
T 2b7n_A 231 LLEASGNI-SLESINAYAKSGVDAISVGALIH 261 (273)
T ss_dssp EEEEESSC-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred EEEEECCC-CHHHHHHHHHcCCcEEEEcHHhc
Confidence 99999999 99999999999999999999754
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0043 Score=57.54 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
++..+.++.+.+.|++.+.++.... ...+.++.+++.+ ++++++ |++.+.+.+..+.++|+|+|.++.
T Consensus 19 ~~~~~~~~~~~~~G~~~i~l~~~~~---~~~~~i~~i~~~~-~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~------ 88 (212)
T 2v82_A 19 DEALAHVGAVIDAGFDAVEIPLNSP---QWEQSIPAIVDAY-GDKALIGAGTVLKPEQVDALARMGCQLIVTPN------ 88 (212)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETTST---THHHHHHHHHHHH-TTTSEEEEECCCSHHHHHHHHHTTCCEEECSS------
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHhC-CCCeEEEeccccCHHHHHHHHHcCCCEEEeCC------
Confidence 4466778888899999999866543 2346666676655 444444 677888999999999999995321
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
... ++.+.++..+.+++. |+.|+.++.++..+|||.|.+
T Consensus 89 ----------~~~----~~~~~~~~~g~~~~~--g~~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 89 ----------IHS----EVIRRAVGYGMTVCP--GCATATEAFTALEAGAQALKI 127 (212)
T ss_dssp ----------CCH----HHHHHHHHTTCEEEC--EECSHHHHHHHHHTTCSEEEE
T ss_pred ----------CCH----HHHHHHHHcCCCEEe--ecCCHHHHHHHHHCCCCEEEE
Confidence 111 123444556778877 499999999999999999986
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0022 Score=60.52 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCC--CceE--EE-cccCCHH----HHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYP--ELDV--IG-GNVVTMY----QAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~--~~~V--i~-g~V~t~e----~a~~l~~aGad~I~v~~ 318 (505)
....++.+++.|+|.+.+...-|.. ..+.+.+..+++... +.|+ |. -...+.+ .++.+.++|+|+|+.+.
T Consensus 90 k~~e~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfVKTsT 169 (234)
T 1n7k_A 90 KLVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTST 169 (234)
T ss_dssp HHHHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCC
T ss_pred HHHHHHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 4456778889999999887655432 245666666666432 3554 43 2223444 34667789999998874
Q ss_pred CCcceeecccccccCcChHHHHHH--HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYK--VSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~--v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
|-+ +.+..++..+.. .++. .++||-++|||++..|..+.+.+||+
T Consensus 170 G~~---------~~~gAt~~dv~l~~m~~~---v~v~VKaaGGirt~~~al~~i~aGa~ 216 (234)
T 1n7k_A 170 GVY---------TKGGDPVTVFRLASLAKP---LGMGVKASGGIRSGIDAVLAVGAGAD 216 (234)
T ss_dssp SSS---------CCCCSHHHHHHHHHHHGG---GTCEEEEESSCCSHHHHHHHHHTTCS
T ss_pred CCC---------CCCCCCHHHHHHHHHHHH---HCCCEEEecCCCCHHHHHHHHHcCcc
Confidence 311 001123333322 2222 23899999999999999999999999
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0094 Score=55.88 Aligned_cols=123 Identities=24% Similarity=0.314 Sum_probs=78.4
Q ss_pred HHHHHHcCccEEEEeCCCC--CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQG--NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g--~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+..+.+.|++++.+.-+.- ........++...+. +..+++ .|.+.++...+...+.+.|-+- .+...
T Consensus 78 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~--GL~~iv-cVge~~e~~~~~~~~~~iIaye--------p~wai 146 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSL--GLDVVV-CAPDPRTSLAAAALGPHAVAVE--------PPELI 146 (226)
T ss_dssp HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTCCSEEEEC--------CGGGT
T ss_pred HHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHC--CCEEEE-EeCCHHHHHHHhcCCCCEEEEc--------Chhhh
Confidence 4567788999998743331 112233333333333 666666 6787777777888888755331 12334
Q ss_pred ccCc----ChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 331 AVGR----GQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 331 g~g~----p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
|.|+ .+.+-+.++.+..+. .+++++..|||.++.|+..+...|+|++.+|+.++.+
T Consensus 147 GtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a 208 (226)
T 1w0m_A 147 GTGRAVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA 208 (226)
T ss_dssp TTSCCHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCC
Confidence 4442 222223333333332 2589999999999999999999999999999998753
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.004 Score=61.33 Aligned_cols=121 Identities=19% Similarity=0.215 Sum_probs=75.4
Q ss_pred HHHHHHHcCccEEEEeCCCCC---chhHHHHHHHHHHhC--CCceEEEc------ccC---C-----HHHHHHHHHcCCC
Q 010640 252 RLEHLVKAGVNVVVLDSSQGN---SSFQIEMIKYAKKTY--PELDVIGG------NVV---T-----MYQAQNLIEAGVD 312 (505)
Q Consensus 252 ~~~~lieaGad~I~i~~~~g~---~~~~~~~i~~l~~~~--~~~~Vi~g------~V~---t-----~e~a~~l~~aGad 312 (505)
.++.+++.|+|++.+....+. ....++.+..+.+.. .++|+++- .+. + .+.++.+.+.|+|
T Consensus 113 ~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD 192 (304)
T 1to3_A 113 NAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 192 (304)
T ss_dssp CHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred hHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCC
Confidence 356678899999975442221 234455555555442 27777662 121 1 2236778889999
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHhh-cCCc-EEecCCCCCH----HHHHHHHHhCCCEEEeccccc
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ-SGVP-VIADGGISNS----GHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~-~~ip-vIa~GGI~~~----~di~kal~lGA~~V~~G~~f~ 384 (505)
++.+... ..+. +....+.++.+.... +++| |+.+||+ +. ..+..++.+||++|.+|+.+.
T Consensus 193 ~iKv~~~---------~~~~--g~~~~~~~vv~~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~ 258 (304)
T 1to3_A 193 LYKVEMP---------LYGK--GARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVW 258 (304)
T ss_dssp EEEECCG---------GGGC--SCHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHH
T ss_pred EEEeCCC---------cCCC--CCHHHHHHHHHhccccCCCCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHh
Confidence 9988521 0011 133444444443222 5799 9999999 55 348889999999999998764
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0069 Score=58.01 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=89.9
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcc-cCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGN-VVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~-V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+..+.++.+.+.|++++.+-...+...+..+.++.+++.+ ++||..|. +.+......+..+|||+|.++.
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v-~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~------- 136 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIV------- 136 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEH-------
T ss_pred CCHHHHHHHHHHcCCCEEEEecchhhhccCHHHHHHHHHhc-CCCEEECCcCCCHHHHHHHHHcCCCEEEECc-------
Confidence 34678899999999999988654444444567788888887 89998876 4577688889999999997752
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+ + ..+.++.+.++..++.++. -+.+..++.+|+.+|++.++++.+++.
T Consensus 137 -~~l-----~--~~l~~l~~~a~~lGl~~lv--ev~~~~E~~~a~~~gad~IGvn~~~l~ 186 (254)
T 1vc4_A 137 -ALL-----G--ELTGAYLEEARRLGLEALV--EVHTERELEIALEAGAEVLGINNRDLA 186 (254)
T ss_dssp -HHH-----G--GGHHHHHHHHHHHTCEEEE--EECSHHHHHHHHHHTCSEEEEESBCTT
T ss_pred -cch-----H--HHHHHHHHHHHHCCCeEEE--EECCHHHHHHHHHcCCCEEEEccccCc
Confidence 111 1 2234444445556777666 678999999999999999999988764
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0035 Score=58.95 Aligned_cols=131 Identities=14% Similarity=0.235 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhCCCceEEE--cccC-----------------------CHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTYPELDVIG--GNVV-----------------------TMYQ 302 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~~~~~Vi~--g~V~-----------------------t~e~ 302 (505)
..+.++.+.+.|+|++.+..+.|.. ..+.+.++.+|+ + ++|++. ++.. ...+
T Consensus 25 ~~~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~-~~Piil~p~~~~~~~~gaD~il~pslln~~~~~~i~g~~ 102 (235)
T 3w01_A 25 SDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRR-Y-PLPLVLEISNIESVMPGFDFYFVPTVLNSTDVAFHNGTL 102 (235)
T ss_dssp CHHHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTT-S-CSCEEEECCCSTTCCTTCSEEEEEEETTBSSGGGTTHHH
T ss_pred CHHHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcC-c-CCCEEEecCCHHHhhcCCCEEEEccccCCCCcchhhhHH
Confidence 3456667788999999998887754 567888888887 4 777655 3221 1222
Q ss_pred HHHHHHcCC-----CEEE----EccCCccee----------------ecc--------c---ccccCcC-hHHHHHHHHH
Q 010640 303 AQNLIEAGV-----DGLR----VGMGSGSIC----------------TTQ--------E---VCAVGRG-QATAVYKVSS 345 (505)
Q Consensus 303 a~~l~~aGa-----d~I~----v~~g~g~~~----------------~~~--------~---~~g~g~p-~~~~l~~v~~ 345 (505)
.+.+.+.|. +.|- +-+..+... +.+ . ....|.+ ..+.+ .+
T Consensus 103 ~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~~vY~e~sG~~g~~~~v---~~ 179 (235)
T 3w01_A 103 LEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGIYGDVSKV---QA 179 (235)
T ss_dssp HHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEECTTSCCCHHHH---HH
T ss_pred HHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCCEEEEecCCCcCCHHHH---HH
Confidence 334455555 4443 211111100 000 0 0012222 22233 33
Q ss_pred HHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 346 IAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 346 ~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+.. ++|++..|||++++++.++.. |||+|.+|++|..
T Consensus 180 ir~~~~~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~ 219 (235)
T 3w01_A 180 VSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK 219 (235)
T ss_dssp HHTTCSSSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred HHHhcCCCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence 33334 689999999999999988777 9999999999853
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0092 Score=55.92 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=77.5
Q ss_pred HHHHHHcCccEEEEeCCC--CCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccc
Q 010640 253 LEHLVKAGVNVVVLDSSQ--GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~--g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
+..+.+.|++++.+.-+. -........++...+. +..+++ .|.+.++...+...+.+.|-+- .+...
T Consensus 81 ~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~--GL~~iv-cVge~~e~~~~~~~~~~iIaye--------p~wai 149 (225)
T 1hg3_A 81 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEV--GLMTMV-CSNNPAVSAAVAALNPDYVAVE--------PPELI 149 (225)
T ss_dssp HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHH--TCEEEE-EESSHHHHHHHHTTCCSEEEEC--------CTTTT
T ss_pred HHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHC--CCEEEE-EeCCHHHHHHHhcCCCCEEEEe--------Chhhh
Confidence 456778999999883322 1112233344444444 566666 6777777777777787755331 12233
Q ss_pred ccC----cChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 331 AVG----RGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 331 g~g----~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
|.| ..+.+-+.++.+..+. .+++++..|||.++.|+..+...|+|++.+|+.++.+
T Consensus 150 GtG~~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a 211 (225)
T 1hg3_A 150 GTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 211 (225)
T ss_dssp TTSCCTTTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCC
Confidence 333 2222223333333332 2589999999999999999999999999999998753
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0021 Score=65.62 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc--ccC----
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG--NVV---- 298 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g--~V~---- 298 (505)
+.+.+..+.++|.|.|.||.++|+ + ....+.++.+++.++.-+|.+. ...
T Consensus 170 ~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g 249 (407)
T 3tjl_A 170 YTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQN 249 (407)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCC
Confidence 556677788899999999986631 1 2357777788877643355442 100
Q ss_pred -----C--------HHHHHHH---HHcC--CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCC
Q 010640 299 -----T--------MYQAQNL---IEAG--VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI 360 (505)
Q Consensus 299 -----t--------~e~a~~l---~~aG--ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI 360 (505)
+ ..-++.| .++| +++|.+..+...... .....+..+.+. .+++ ..++|||+.|||
T Consensus 250 ~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~-~~~~~~~~~~~~---~ir~---~~~~PvI~~Ggi 322 (407)
T 3tjl_A 250 MKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNV-DVSEEDQAGDNE---FVSK---IWKGVILKAGNY 322 (407)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTE-ECCGGGCCCCSH---HHHH---HCCSEEEEESCG
T ss_pred CcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCC-cCCccchhHHHH---HHHH---HhCCCEEecCCC
Confidence 2 2345677 7789 999988632111000 000001011222 2222 246899999999
Q ss_pred CCHHHHHHHHHh---C-CCEEEecccccCC
Q 010640 361 SNSGHIVKALVL---G-ASTVMMGSFLAGS 386 (505)
Q Consensus 361 ~~~~di~kal~l---G-A~~V~~G~~f~~~ 386 (505)
.+..|..+++.. | ||+|++|+.|+..
T Consensus 323 ~~~~dA~~~i~~~~~g~aDlVa~GR~~iaN 352 (407)
T 3tjl_A 323 SYDAPEFKTLKEDIADKRTLVGFSRYFTSN 352 (407)
T ss_dssp GGGTTTTHHHHHHHTTSSEEEECSHHHHHC
T ss_pred CCHHHHHHHHHhhccCCCeEEEeChhhhhC
Confidence 999887777765 4 9999999999754
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.013 Score=54.30 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=78.7
Q ss_pred HHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCC--ceEEEcccCCHHHHHHHHHcCCCEEEEcc------------
Q 010640 253 LEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPE--LDVIGGNVVTMYQAQNLIEAGVDGLRVGM------------ 318 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~--~~Vi~g~V~t~e~a~~l~~aGad~I~v~~------------ 318 (505)
++.+.+..+|++.+|...... .-.+.++.+++..+. +|++... ...+....+.++|++.+....
T Consensus 18 ~~~~~~~~~dlvl~D~~~p~~-~g~~~~~~l~~~~~~~~i~vi~~~-~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i 95 (237)
T 3cwo_X 18 VEKYKELKPDIVTMDITMPEM-NGIDAIKEIMKIDPNAKIIVCSAM-GQQAMVIEAIKAGAKDFIVNTAAVENPSLITQI 95 (237)
T ss_dssp HHHHHHHCCSCEEEECCSTTS-SHHHHHHHHHHHSSSCCEEEECCS-STHHHHHHHHHTTCCEEEESHHHHHCTHHHHHH
T ss_pred HHHHHhcCCCEEEEeCCCCCC-CHHHHHHHHHHhCCCCCEEEEECC-CCHHHHHHHHHCCHHheEeCCcccChHHHHHHH
Confidence 444455678888887754332 235677777766543 5555432 237777888889988876421
Q ss_pred ----CCcce-------------------------------------------eecc-cccccCcChHHHHHHHHHHHhhc
Q 010640 319 ----GSGSI-------------------------------------------CTTQ-EVCAVGRGQATAVYKVSSIAAQS 350 (505)
Q Consensus 319 ----g~g~~-------------------------------------------~~~~-~~~g~g~p~~~~l~~v~~~~~~~ 350 (505)
+.... ..+. ...|.+-+. . ...+++.....
T Consensus 96 ~~~~~~~~~~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g~-~-~~~i~~~~~~~ 173 (237)
T 3cwo_X 96 AQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-D-TEMIRFVRPLT 173 (237)
T ss_dssp HHHHTGGGEEEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTCCSCC-C-HHHHHHHGGGC
T ss_pred HHHhCCCceEEEeeecccCCcEEEEEeCCccccccCHHHHHHHHhhcCCCeEEEEecCCCCccccc-c-HHHHHHHHHhc
Confidence 00000 0000 001111000 0 22334444455
Q ss_pred CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 351 GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 351 ~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++|+|+.||+.++.++.+++.+||++|++|++|.
T Consensus 174 ~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~ 207 (237)
T 3cwo_X 174 TLPIIASGGAGKMEHFLEAFLAGADAALAASVFH 207 (237)
T ss_dssp CSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred CCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHH
Confidence 7999999999999999999999999999999984
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0012 Score=63.61 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=54.9
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.++.+.++|++.|.+.--. ....+.+ +.+..+ .+.++..++|++..|||.+..++.+++.+||++|.
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~------~~~~~~g-~~~~~i---~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~ 101 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSID------RDGTKSG-YDTEMI---RFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKAL 101 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETT------TSSCSSC-CCHHHH---HHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHCCCCEEEEEecC------cccCCCc-ccHHHH---HHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhh
Confidence 4567888899999999874100 0001111 233333 44455678999999999999999999999999999
Q ss_pred eccccc
Q 010640 379 MGSFLA 384 (505)
Q Consensus 379 ~G~~f~ 384 (505)
+|+.++
T Consensus 102 lg~~~~ 107 (266)
T 2w6r_A 102 AASVFH 107 (266)
T ss_dssp CCCCC-
T ss_pred hhHHHH
Confidence 999887
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=62.29 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=81.1
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEE-ccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~ 326 (505)
...++.+.++|+|.+.++.... ......++.+|+. ++.+.+ ..-...+..+.+.. .+|.|.+ +..+|.. +
T Consensus 99 ~~~i~~~~~aGAd~itvH~Ea~--~~~~~~i~~ir~~--G~k~Gvalnp~Tp~e~l~~~l~-~vD~VlvMsV~PGfg--G 171 (246)
T 3inp_A 99 DALIESFAKAGATSIVFHPEAS--EHIDRSLQLIKSF--GIQAGLALNPATGIDCLKYVES-NIDRVLIMSVNPGFG--G 171 (246)
T ss_dssp HHHHHHHHHHTCSEEEECGGGC--SCHHHHHHHHHTT--TSEEEEEECTTCCSGGGTTTGG-GCSEEEEECSCTTC----
T ss_pred HHHHHHHHHcCCCEEEEccccc--hhHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHh-cCCEEEEeeecCCCC--C
Confidence 3567888999999999976443 2456777777776 555433 22233444444443 6898866 4444321 1
Q ss_pred ccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ .|...++.-+.++++...+ .+++|.++|||. ...+.++..+|||.+.+||.+.
T Consensus 172 Q---~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf 227 (246)
T 3inp_A 172 Q---KFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIF 227 (246)
T ss_dssp C---CCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHH
T ss_pred c---ccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHh
Confidence 1 1222345556666665543 358999999998 6789999999999999999864
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0041 Score=60.49 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=67.4
Q ss_pred HHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 277 IEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 277 ~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
...++..|+.++. .+|.+ ++.+.++++.+.++|+|+|.+++ ...+.+.++.+..+. ++|+.
T Consensus 183 ~~av~~ar~~~~~~~~IgV-ev~t~eea~eA~~aGaD~I~ld~----------------~~~~~~k~av~~v~~-~ipi~ 244 (286)
T 1x1o_A 183 GEAVRRAKARAPHYLKVEV-EVRSLEELEEALEAGADLILLDN----------------FPLEALREAVRRVGG-RVPLE 244 (286)
T ss_dssp HHHHHHHHHHSCTTSCEEE-EESSHHHHHHHHHHTCSEEEEES----------------CCHHHHHHHHHHHTT-SSCEE
T ss_pred HHHHHHHHHhCCCCCEEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhCC-CCeEE
Confidence 4567777887754 56666 88899999999999999997652 122334444444332 59999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++||| +...+......|+|++.+|+...
T Consensus 245 AsGGI-t~eni~~~a~tGvD~IsVgs~~~ 272 (286)
T 1x1o_A 245 ASGNM-TLERAKAAAEAGVDYVSVGALTH 272 (286)
T ss_dssp EESSC-CHHHHHHHHHHTCSEEECTHHHH
T ss_pred EEcCC-CHHHHHHHHHcCCCEEEEcHHHc
Confidence 99998 58999999999999999998654
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0065 Score=58.15 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCC--Cce--EEEcc--cCCHH----HHHHHHHcCCCE
Q 010640 249 DKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYP--ELD--VIGGN--VVTMY----QAQNLIEAGVDG 313 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~--~~~--Vi~g~--V~t~e----~a~~l~~aGad~ 313 (505)
....++.+++.|++.|.+... .|+...+.+.++.+++..+ +.+ ||+-+ ..+.+ .++.+.++|+|+
T Consensus 87 Kv~E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADf 166 (260)
T 1p1x_A 87 ALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADF 166 (260)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCE
Confidence 445667788899999876553 3555667788888877642 244 34421 12333 456678899999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHh----hcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA----QSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~----~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
|+.+.|-+. +..++..+...++..+ ..+++|-++|||++..|..+.+.+||+ .+|.-|
T Consensus 167 VKTSTGf~~----------~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~aga~--~lG~~w 228 (260)
T 1p1x_A 167 IKTSTGKVA----------VNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADE--LFGADW 228 (260)
T ss_dssp EECCCSCSS----------CCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHH--HHCTTS
T ss_pred EEeCCCCCC----------CCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhhhh--hccccc
Confidence 988743110 1124443333333322 235999999999999999999999886 344433
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0032 Score=59.47 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=80.1
Q ss_pred HHHHHHHHcCccEEEEeCCC-CCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEE-ccCCcceeecc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQ-GNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQ 327 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~-g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~ 327 (505)
..++.+.++|+|.+.++... .. .....++.+++. ++.+.+- +..|+.+...-...++|.+.+ +..+|.. ++
T Consensus 71 ~~i~~~~~aGAd~itvh~Ea~~~--~~~~~i~~i~~~--G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfg--gQ 144 (231)
T 3ctl_A 71 DYIAQLARAGADFITLHPETING--QAFRLIDEIRRH--DMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFA--GQ 144 (231)
T ss_dssp GTHHHHHHHTCSEEEECGGGCTT--THHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCS--SC
T ss_pred HHHHHHHHcCCCEEEECcccCCc--cHHHHHHHHHHc--CCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcC--Cc
Confidence 35688899999999998754 32 356777777776 5554331 344443332222348998865 4444321 11
Q ss_pred cccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEec-cccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMG-SFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G-~~f~ 384 (505)
.+....+.-+.++++.... .+++|.++|||. ...+.++..+|||.+.+| +.+.
T Consensus 145 ---~f~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif 200 (231)
T 3ctl_A 145 ---PFIPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLF 200 (231)
T ss_dssp ---CCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTG
T ss_pred ---cccHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHh
Confidence 1222345556666665543 368999999987 677889999999999999 8764
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00057 Score=64.99 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.++.+.++|+|.|.+.-- .....+. ...+..+. +.+ ..++|++..|||.+..++.+++.+|||+|+
T Consensus 32 ~~~~a~~~~~~Gad~i~v~d~------~~~~~~~-~~~~~~i~---~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~ 100 (241)
T 1qo2_A 32 PVELVEKLIEEGFTLIHVVDL------SNAIENS-GENLPVLE---KLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_dssp HHHHHHHHHHTTCCCEEEEEH------HHHHHCC-CTTHHHHH---HGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHcCCCEEEEecc------cccccCC-chhHHHHH---HHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEE
Confidence 456788899999999976410 0000011 13344443 333 467999999999999999999999999999
Q ss_pred ecccccCCC
Q 010640 379 MGSFLAGST 387 (505)
Q Consensus 379 ~G~~f~~~~ 387 (505)
+|+.++...
T Consensus 101 lg~~~l~~p 109 (241)
T 1qo2_A 101 VSSKVLEDP 109 (241)
T ss_dssp ECHHHHHCT
T ss_pred ECchHhhCh
Confidence 999876543
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0055 Score=59.15 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCch---hHHHHHHHHHHhCCCceE--EEc--ccCCHH----HHHHHHHcCCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSS---FQIEMIKYAKKTYPELDV--IGG--NVVTMY----QAQNLIEAGVD 312 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~---~~~~~i~~l~~~~~~~~V--i~g--~V~t~e----~a~~l~~aGad 312 (505)
....++.+++.|++.|.+...- |+.. .+.+.++.+++..++.++ |+- -..+.+ .++.+.++|+|
T Consensus 108 Kv~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGAD 187 (281)
T 2a4a_A 108 VLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNGNAD 187 (281)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCC
Confidence 4456677888999998776543 3334 567788888887644442 441 112333 34667789999
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHh---------hcCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA---------QSGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~---------~~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
+|+.+.|-+. +..++..+...++..+ ..+++|-++|||++..|+.+.+.+||+
T Consensus 188 fVKTSTGf~~----------~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 188 FIKTSTGKVQ----------INATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARR 249 (281)
T ss_dssp EEECCCSCSS----------CCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHH
T ss_pred EEEeCCCCCC----------CCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHHHHHHHHHHhhh
Confidence 9988743210 1123333333333332 346999999999999999999999886
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0017 Score=63.67 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=67.2
Q ss_pred HHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCCc
Q 010640 277 IEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGVP 353 (505)
Q Consensus 277 ~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ip 353 (505)
.+.++..++.+|. .++++ ++.|.++++.+.++|+|+|.+++ ++ +..+..+.+..+. .++|
T Consensus 184 ~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~-------------~~---~~~l~~~v~~l~~~~~~~~ 246 (299)
T 2jbm_A 184 EKAVRAARQAADFALKVEV-ECSSLQEAVQAAEAGADLVLLDN-------------FK---PEELHPTATVLKAQFPSVA 246 (299)
T ss_dssp HHHHHHHHHHHTTTSCEEE-EESSHHHHHHHHHTTCSEEEEES-------------CC---HHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHhCCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECC-------------CC---HHHHHHHHHHhhccCCCee
Confidence 4566677776653 56666 78899999999999999998753 11 2334444444332 1389
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|.++||| |...+......|||.+.+|+.+.
T Consensus 247 I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~ 276 (299)
T 2jbm_A 247 VEASGGI-TLDNLPQFCGPHIDVISMGMLTQ 276 (299)
T ss_dssp EEEESSC-CTTTHHHHCCTTCCEEECTHHHH
T ss_pred EEEECCC-CHHHHHHHHHCCCCEEEEChhhc
Confidence 9999999 99999999999999999999653
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0043 Score=58.74 Aligned_cols=130 Identities=14% Similarity=0.002 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-------CceEEE-cccCCHHHHHHHHHcCCCEEEE-cc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-------ELDVIG-GNVVTMYQAQNLIEAGVDGLRV-GM 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-------~~~Vi~-g~V~t~e~a~~l~~aGad~I~v-~~ 318 (505)
+....++.+.++|+|.+.+|..... .....++++++..+ +..+.+ =+..|+.+.......++|.|.+ +.
T Consensus 80 ~p~~~i~~~~~aGAd~itvH~ea~~--~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~D~vlvMsv 157 (237)
T 3cu2_A 80 NQLEVAKAVVANGANLVTLQLEQYH--DFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTL 157 (237)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTCTT--SHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTCSEEEEESE
T ss_pred CHHHHHHHHHHcCCCEEEEecCCcc--cHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcCceeeeeee
Confidence 3567888999999999999875542 34566666655410 222222 1334444443333458998866 44
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHH--hCCCEEEecccccC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALV--LGASTVMMGSFLAG 385 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~--lGA~~V~~G~~f~~ 385 (505)
++|..... +....+.-+.++++...+ .++||.++|||. ...+.++.. +|||.+.+|+.+..
T Consensus 158 ~pgfggq~-----f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~ 222 (237)
T 3cu2_A 158 DPRNGTKY-----PSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFS 222 (237)
T ss_dssp ETTTTEEC-----CHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGS
T ss_pred ccCcCCee-----cChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhC
Confidence 44322111 111234445556655533 258999999987 788999999 99999999998753
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.016 Score=54.01 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--c-ccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--G-NVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g-~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
...++.+.+.|+|.+.+|...+.. .....++.+++. +.++++ - .+. ......+.+.|.+.+++..+ .. +
T Consensus 70 ~t~~~~~~~~Gad~itvh~~~g~~-~l~~~~~~~~~~--g~~~~~~ll~~~t-~~~~~~l~~~~~~~~vl~~a--~~--~ 141 (216)
T 1q6o_A 70 KILSRMCFEANADWVTVICCADIN-TAKGALDVAKEF--NGDVQIELTGYWT-WEQAQQWRDAGIGQVVYHRS--RD--A 141 (216)
T ss_dssp HHHHHHHHHTTCSEEEEETTSCHH-HHHHHHHHHHHT--TCEEEEEECSCCC-HHHHHHHHHTTCCEEEEECC--HH--H
T ss_pred HHHHHHHHhCCCCEEEEeccCCHH-HHHHHHHHHHHc--CCCceeeeeeCCC-hhhHHHHHhcCcHHHHHHHH--HH--H
Confidence 344557889999999998876531 234555556654 555422 1 333 56667777778776655210 00 0
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...|.+. .+.-+..+++.+. .+.||+++|||. +..+.+++.+||+.+.+|+.+..
T Consensus 142 -~~~G~~g-~~~~i~~lr~~~~-~~~~i~v~GGI~-~~~~~~~~~aGad~ivvG~~I~~ 196 (216)
T 1q6o_A 142 -QAAGVAW-GEADITAIKRLSD-MGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRD 196 (216)
T ss_dssp -HHTTCCC-CHHHHHHHHHHHH-TTCEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHT
T ss_pred -HhcCCCC-CHHHHHHHHHhcC-CCCcEEEECCcC-hhhHHHHHHcCCCEEEEeehhcC
Confidence 0112111 2444555555553 368899999998 77789999999999999998754
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0035 Score=59.43 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=54.8
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.++.+.++|+|++.+..-.+ .+.+ ....+..+.+.++..++|+++.||+.++.++.+++.+|||+|.
T Consensus 35 ~~~~a~~~~~~G~d~i~v~~~~~--------~~~~--~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 35 PVEMAVRYEEEGADEIAILDITA--------APEG--RATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp HHHHHHHHHHTTCSCEEEEECCC--------CTTT--HHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCCCEEEEEeCCc--------cccC--CcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 45678888999999887641100 0011 1112233444455568999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+.++.
T Consensus 105 i~~~~~~ 111 (253)
T 1h5y_A 105 VNTAAVR 111 (253)
T ss_dssp ESHHHHH
T ss_pred EChHHhh
Confidence 9988753
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0027 Score=66.58 Aligned_cols=101 Identities=13% Similarity=0.158 Sum_probs=71.5
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHHC-----CCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCC-C
Q 010640 162 NKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKN-----DVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGP-D 234 (505)
Q Consensus 162 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~-----~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~-~ 234 (505)
.+.++.++|++ ++++++++.++.++++.|.++ ++..+||+|+ ++++|+||.+|++....... ..+. .
T Consensus 153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~~~~~----v~dim~ 226 (473)
T 2zy9_A 153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTR----VAEIMN 226 (473)
T ss_dssp CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSCTTSB----GGGTSB
T ss_pred CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCCCCCc----HHHHhC
Confidence 45689999998 999999999999999999986 5789999998 99999999999997532110 1111 1
Q ss_pred CcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCC
Q 010640 235 GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQG 271 (505)
Q Consensus 235 ~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g 271 (505)
... + .+.......+.++.+.+.+...+.+-...|
T Consensus 227 ~~~-~--~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g 260 (473)
T 2zy9_A 227 PKV-V--YVRTDTDQEEVARLMADYDFTVLPVVDEEG 260 (473)
T ss_dssp SSC-C--CEESSSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred CCC-e--EEeCCCcHHHHHHHHHhcCCcEEEEEcCCC
Confidence 111 1 111233466777777788877765543333
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.01 Score=55.00 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=73.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC-C---------HHHHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV-T---------MYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~-t---------~e~a~~l~~aGad~I~v~~ 318 (505)
....++.+.+.|+|++.+|...|. +.++.+++.. ++.+...+-. . ..-++...+.|+++++.+.
T Consensus 67 ~~~~v~~~~~~Gad~vtvh~~~g~-----~~i~~~~~~~-gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~ 140 (208)
T 2czd_A 67 NRLIARKVFGAGADYVIVHTFVGR-----DSVMAVKELG-EIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPG 140 (208)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTCH-----HHHHHHHTTS-EEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCC
T ss_pred HHHHHHHHHhcCCCEEEEeccCCH-----HHHHHHHHhC-CcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECC
Confidence 456677888999999999887652 3366666653 4444443211 0 1225567788999886541
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HHHHHHHHHhCCCEEEecccccC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+..+..+++.+. .-+++.+|||+. +.++.+++.+||+.+.+|+.+..
T Consensus 141 ----------------~~~~~i~~lr~~~~--~~~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~ 190 (208)
T 2czd_A 141 ----------------TRPERIGYIRDRLK--EGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYN 190 (208)
T ss_dssp ----------------SSTHHHHHHHHHSC--TTCEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHT
T ss_pred ----------------CChHHHHHHHHhCC--CCeEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhc
Confidence 11223344444432 135779999986 55899999999999999998764
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0091 Score=60.16 Aligned_cols=130 Identities=15% Similarity=0.087 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc--------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG-------- 295 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g-------- 295 (505)
.+.+.++.+.++|.|.|+||.+||+ + +-.++.++.+|+.++.-++.+.
T Consensus 153 ~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~ 232 (358)
T 4a3u_A 153 DYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQ 232 (358)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccC
Confidence 3566677888999999999986542 1 2457788888887643344431
Q ss_pred -ccC--C----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 296 -NVV--T----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 296 -~V~--t----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
... . ...++.+.+.|++.+.++.+.-.... ..+...+... .+++ ....||+ .||+.++..+.+
T Consensus 233 g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~a~---~ik~---~~~~~v~-~~g~~~~~~ae~ 302 (358)
T 4a3u_A 233 GTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGTF---GKTDQPKLSP---EIRK---VFKPPLV-LNQDYTFETAQA 302 (358)
T ss_dssp TBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCSS---SBCSSCCCHH---HHHH---HCCSCEE-EESSCCHHHHHH
T ss_pred CCcccchHHHHHHHHHhhhccCccccccccccccCcc---cccccHHHHH---HHHH---hcCCcEE-EeCCCCHHHHHH
Confidence 111 1 22356777899999988643211110 0111112221 2222 2445666 488999999999
Q ss_pred HHHhC-CCEEEecccccCCC
Q 010640 369 ALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~~ 387 (505)
+|+-| ||+|.+|++|+.-.
T Consensus 303 ~l~~G~aD~V~~gR~~ladP 322 (358)
T 4a3u_A 303 ALDSGVADAISFGRPFIGNP 322 (358)
T ss_dssp HHHHTSCSEEEESHHHHHCT
T ss_pred HHHcCCceEeHhhHHHHhCh
Confidence 99999 99999999998643
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0077 Score=59.13 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
..+.++..++.+|..++.+ .|.|.++++.+.++|+|+|.+.+ ..+..+.++.+..+ .++++.
T Consensus 218 i~~Av~~ar~~~p~~kIeV-EVdtldea~eAl~aGaD~I~LDn----------------~~~~~l~~av~~l~-~~v~ie 279 (320)
T 3paj_A 218 IRQAISTAKQLNPGKPVEV-ETETLAELEEAISAGADIIMLDN----------------FSLEMMREAVKINA-GRAALE 279 (320)
T ss_dssp HHHHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----------------CCHHHHHHHHHHHT-TSSEEE
T ss_pred HHHHHHHHHHhCCCCeEEE-EECCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhC-CCCeEE
Confidence 4567777888887777777 88999999999999999997753 12344555555443 369999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
++||| |...+......|+|.+.+|+.
T Consensus 280 aSGGI-t~~~I~~~a~tGVD~isvGal 305 (320)
T 3paj_A 280 NSGNI-TLDNLKECAETGVDYISVGAL 305 (320)
T ss_dssp EESSC-CHHHHHHHHTTTCSEEECTHH
T ss_pred EECCC-CHHHHHHHHHcCCCEEEECce
Confidence 99998 588888888999999999985
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0014 Score=64.13 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc----
Q 010640 276 QIEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS---- 350 (505)
Q Consensus 276 ~~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~---- 350 (505)
..+.++..++.+|. .++++ ++.|.++++.+.++|+|+|.+++. + +..+.++.+..+..
T Consensus 185 i~~ai~~~r~~~~~~~~i~v-ev~tlee~~~A~~aGaD~I~ld~~-------------~---~~~l~~~v~~l~~~~~g~ 247 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEV-ECLSEDEATEAIEAGADVIMLDNF-------------K---GDGLKMCAQSLKNKWNGK 247 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEE-ECSSSHHHHHHHHHTCSEEECCC------------------------------------
T ss_pred HHHHHHHHHHhcCcCCeEEE-ecCCHHHHHHHHHcCCCEEEECCC-------------C---HHHHHHHHHHhcccccCC
Confidence 45567777777653 56666 788889999999999999977531 1 12233333333221
Q ss_pred -CCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 351 -GVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 351 -~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++||.++||| |...+.+....|||.+.+|+..
T Consensus 248 ~~v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i 280 (294)
T 3c2e_A 248 KHFLLECSGGL-NLDNLEEYLCDDIDIYSTSSIH 280 (294)
T ss_dssp -CCEEEEECCC-CC------CCCSCSEEECGGGT
T ss_pred CCeEEEEECCC-CHHHHHHHHHcCCCEEEEechh
Confidence 2899999999 9999999999999999999975
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0053 Score=59.43 Aligned_cols=89 Identities=20% Similarity=0.160 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
..+.++..++..|..++.+ +|.|.++++.+.++|+|+|.+.+ ..+..+.++.+..+ .++++.
T Consensus 185 i~~Av~~ar~~~~~~~IeV-Ev~tl~ea~eAl~aGaD~I~LDn----------------~~~~~l~~av~~~~-~~v~ie 246 (287)
T 3tqv_A 185 IAKAVTKAKKLDSNKVVEV-EVTNLDELNQAIAAKADIVMLDN----------------FSGEDIDIAVSIAR-GKVALE 246 (287)
T ss_dssp HHHHHHHHHHHCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----------------CCHHHHHHHHHHHT-TTCEEE
T ss_pred HHHHHHHHHhhCCCCcEEE-EeCCHHHHHHHHHcCCCEEEEcC----------------CCHHHHHHHHHhhc-CCceEE
Confidence 4566777777766788877 89999999999999999997753 12344555555443 368999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++||| |...+......|+|.+.+|+..
T Consensus 247 aSGGI-t~~~i~~~a~tGVD~IsvGalt 273 (287)
T 3tqv_A 247 VSGNI-DRNSIVAIAKTGVDFISVGAIT 273 (287)
T ss_dssp EESSC-CTTTHHHHHTTTCSEEECSHHH
T ss_pred EECCC-CHHHHHHHHHcCCCEEEEChhh
Confidence 99998 7788888889999999999764
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0058 Score=59.38 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCCc
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGVP 353 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ip 353 (505)
....++..++.+|..++.+ ++.+.++++.+.++|+|.|.+.+ .++..+.++.+..+. .+++
T Consensus 181 i~~av~~ar~~~~~~~I~V-ev~t~eea~eal~aGaD~I~LDn----------------~~~~~~~~~v~~l~~~~~~v~ 243 (284)
T 1qpo_A 181 VVDALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDN----------------FAVWQTQTAVQRRDSRAPTVM 243 (284)
T ss_dssp HHHHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEET----------------CCHHHHHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhhccCCCeE
Confidence 3567777888876557777 88899999999999999997653 122334444444433 1589
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+.++||| |...+.+....|+|.+.+|+..
T Consensus 244 ieaSGGI-t~~~i~~~a~tGVD~isvG~l~ 272 (284)
T 1qpo_A 244 LESSGGL-SLQTAATYAETGVDYLAVGALT 272 (284)
T ss_dssp EEEESSC-CTTTHHHHHHTTCSEEECGGGT
T ss_pred EEEECCC-CHHHHHHHHhcCCCEEEECHHH
Confidence 9999998 7888999999999999999865
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.002 Score=61.15 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.++.+.++|+|.+.+..-.+ .+. +.+....+ .+.++.+++|++..|||.++.++..++.+|||.|.
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~------~~~--~~~~~~~i---~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~ 101 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDA------AFG--RGSNHELL---AEVVGKLDVQVELSGGIRDDESLAAALATGCARVN 101 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHH------HTT--SCCCHHHH---HHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHcCCCEEEEEcCcc------ccc--CCChHHHH---HHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 35667888899999997741000 011 11222333 34445568999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+..+.
T Consensus 102 lg~~~l~ 108 (244)
T 2y88_A 102 VGTAALE 108 (244)
T ss_dssp ECHHHHH
T ss_pred ECchHhh
Confidence 9987654
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0071 Score=58.68 Aligned_cols=89 Identities=12% Similarity=0.121 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
..+.++..|+..|..++.+ +|.|.++++.+.++|+|.|.+.+ .++..+.++.+..+. ++.+.
T Consensus 194 i~~Av~~ar~~~p~~kIeV-Ev~tl~e~~eAl~aGaDiImLDn----------------~s~~~l~~av~~~~~-~v~le 255 (300)
T 3l0g_A 194 ITLAIQRLRKNLKNEYIAI-ECDNISQVEESLSNNVDMILLDN----------------MSISEIKKAVDIVNG-KSVLE 255 (300)
T ss_dssp HHHHHHHHHHHSSSCCEEE-EESSHHHHHHHHHTTCSEEEEES----------------CCHHHHHHHHHHHTT-SSEEE
T ss_pred HHHHHHHHHHhCCCCCEEE-EECCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHhhcC-ceEEE
Confidence 4567777888777778877 89999999999999999997653 123455555554443 68999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+|||| |...+......|+|.+.+|+..
T Consensus 256 aSGGI-t~~~i~~~A~tGVD~IsvGalt 282 (300)
T 3l0g_A 256 VSGCV-NIRNVRNIALTGVDYISIGCIT 282 (300)
T ss_dssp EESSC-CTTTHHHHHTTTCSEEECGGGT
T ss_pred EECCC-CHHHHHHHHHcCCCEEEeCccc
Confidence 99998 7778888888999999999754
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.02 Score=53.51 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=79.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.....+.+.+.|+|.+.+|...|. ..+...++.+++.- +...+.+- +..+.+.++.+.+.|++.+.+..+..
T Consensus 71 p~t~~~~~~~~Gad~vtVH~~~g~-~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~~~~~~v~~~a~~---- 145 (221)
T 3exr_A 71 GGTVAKNNAVRGADWMTCICSATI-PTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRD---- 145 (221)
T ss_dssp HHHHHHHHHTTTCSEEEEETTSCH-HHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHH----
T ss_pred HHHHHHHHHHcCCCEEEEeccCCH-HHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcCCHHHHHHHHHHh----
Confidence 334445578899999999887663 22445555555542 11334332 22367788888888998776632110
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+ ...|. +....-+..+++.+. .+.+|..+||| ++.++..+..+|||.+.+|+++.
T Consensus 146 ~-~~~Gv-v~s~~e~~~ir~~~~-~~~~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~ 200 (221)
T 3exr_A 146 A-LLAGE-TWGEKDLNKVKKLIE-MGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGIT 200 (221)
T ss_dssp H-HHHTC-CCCHHHHHHHHHHHH-HTCEEEEESSC-CGGGGGGGTTCCCSEEEECHHHH
T ss_pred c-CCCcc-ccCHHHHHHHHHhhc-CCceEEEECCC-CHHHHHHHHHCCCCEEEECchhh
Confidence 0 01221 122333444455443 36889999999 66788899999999999999864
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0021 Score=61.02 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=53.7
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
..+.++.+.++|+|.+.+..-.+ .+. +.+....+ .+.++.+++|++..|||.++.++..++.+|||.|.
T Consensus 34 ~~~~a~~~~~~Gad~i~v~~~d~------~~~--~~~~~~~i---~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~ 102 (244)
T 1vzw_A 34 PLEAALAWQRSGAEWLHLVDLDA------AFG--TGDNRALI---AEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVN 102 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHH------HHT--SCCCHHHH---HHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHcCCCEEEEecCch------hhc--CCChHHHH---HHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 34567888899999997641000 011 11222333 34445568999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+..+.
T Consensus 103 lg~~~l~ 109 (244)
T 1vzw_A 103 LGTAALE 109 (244)
T ss_dssp ECHHHHH
T ss_pred ECchHhh
Confidence 9987653
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0031 Score=61.31 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCC-ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCC
Q 010640 276 QIEMIKYAKKTYPE-LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGV 352 (505)
Q Consensus 276 ~~~~i~~l~~~~~~-~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~i 352 (505)
....++..|+.+|. .+|.+ +|.|.++++.+.++|+|+|.+.+ -.+..+.++.+..+. .++
T Consensus 179 i~~av~~ar~~~~~~~~I~V-EV~tleea~eA~~aGaD~I~LDn----------------~~~e~l~~av~~l~~~~~~v 241 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDN----------------LSPEEVKDISRRIKDINPNV 241 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES----------------CCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCCCceEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhhccCCCc
Confidence 45677777777754 67777 78899999999999999997753 123444444444432 158
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
|+.++||| |...+......|+|.+.+|+...
T Consensus 242 ~ieASGGI-t~eni~~~a~tGVD~IsvGslt~ 272 (285)
T 1o4u_A 242 IVEVSGGI-TEENVSLYDFETVDVISSSRLTL 272 (285)
T ss_dssp EEEEEECC-CTTTGGGGCCTTCCEEEEGGGTS
T ss_pred eEEEECCC-CHHHHHHHHHcCCCEEEEeHHHc
Confidence 99999998 67888888899999999998653
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0059 Score=59.41 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
..+.++..++..|..++.+ +|.|.++++.+.++|+|+|.+.+ ..+..+.++.+... .++++.
T Consensus 196 i~~Av~~~r~~~p~~~ieV-Evdtlde~~eAl~aGaD~I~LDn----------------~~~~~l~~av~~i~-~~v~ie 257 (298)
T 3gnn_A 196 VGEALDAAFALNAEVPVQI-EVETLDQLRTALAHGARSVLLDN----------------FTLDMMRDAVRVTE-GRAVLE 257 (298)
T ss_dssp HHHHHHHHHHHC--CCCEE-EESSHHHHHHHHHTTCEEEEEES----------------CCHHHHHHHHHHHT-TSEEEE
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCHHHHHHHHHcCCCEEEECC----------------CCHHHHHHHHHHhC-CCCeEE
Confidence 4567777888877666666 78999999999999999997753 12344444444332 358999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++||| |...+......|+|.+.+|+.-
T Consensus 258 aSGGI-~~~~i~~~a~tGVD~isvG~lt 284 (298)
T 3gnn_A 258 VSGGV-NFDTVRAIAETGVDRISIGALT 284 (298)
T ss_dssp EESSC-STTTHHHHHHTTCSEEECGGGG
T ss_pred EEcCC-CHHHHHHHHHcCCCEEEECCee
Confidence 99998 7778888889999999999853
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0029 Score=60.85 Aligned_cols=69 Identities=12% Similarity=0.059 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 302 QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 302 ~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
-++.....|...+.+..++ + ......+..+++ .. ++|++..|||++.+|+.+++.+|||.|.+
T Consensus 191 Ya~~gad~G~~lV~LD~~~------~------~v~~e~V~~I~~---~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVV 255 (286)
T 3vk5_A 191 YLHVARAFGFHMVYLYSRN------E------HVPPEVVRHFRK---GLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGF 255 (286)
T ss_dssp HHHHHHHTTCSEEEEECSS------S------CCCHHHHHHHHH---HSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEEcCCC------C------cCCHHHHHHHHH---hcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 3444556788888876321 1 112344444444 35 69999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
||++..
T Consensus 256 GSAav~ 261 (286)
T 3vk5_A 256 AGALEQ 261 (286)
T ss_dssp SGGGSS
T ss_pred Cchhhc
Confidence 999853
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.025 Score=53.20 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cc------c---CCHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GN------V---VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~------V---~t~e~a~~l~~aGad~I~v 316 (505)
...+.+..+.++|+..+.+. ..+.++.+|+.. ++||+. +. + .+.+++..+.++|+|+|.+
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~~--------~~~~i~~ir~~v-~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l 107 (229)
T 3q58_A 37 IVAAMAQAAASAGAVAVRIE--------GIENLRTVRPHL-SVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAF 107 (229)
T ss_dssp HHHHHHHHHHHTTCSEEEEE--------SHHHHHHHGGGC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHHCCCcEEEEC--------CHHHHHHHHHhc-CCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEE
Confidence 46677888888999999762 246788888887 889863 21 2 2567899999999999976
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..... ..| ..+.+..+.+++.++++++ .+.+..++.+|..+|||.+.+.
T Consensus 108 ~~~~~-----------~~p--~~l~~~i~~~~~~g~~v~~--~v~t~eea~~a~~~Gad~Ig~~ 156 (229)
T 3q58_A 108 DASFR-----------SRP--VDIDSLLTRIRLHGLLAMA--DCSTVNEGISCHQKGIEFIGTT 156 (229)
T ss_dssp ECCSS-----------CCS--SCHHHHHHHHHHTTCEEEE--ECSSHHHHHHHHHTTCSEEECT
T ss_pred Ccccc-----------CCh--HHHHHHHHHHHHCCCEEEE--ecCCHHHHHHHHhCCCCEEEec
Confidence 42110 012 1233444555566888888 8999999999999999999653
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.46 E-value=0.027 Score=53.12 Aligned_cols=110 Identities=18% Similarity=0.160 Sum_probs=78.5
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--c----c--c---CCHHHHHHHHHcCCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--G----N--V---VTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g----~--V---~t~e~a~~l~~aGad~I~ 315 (505)
....+.+..+.+.|+..+.+. ..+.++.+|+.. ++||+. + + + .+.++++.+.++|+|+|.
T Consensus 36 ~~~~~~A~a~~~~Ga~~i~~~--------~~~~i~~ir~~v-~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~ 106 (232)
T 3igs_A 36 EIVAAMALAAEQAGAVAVRIE--------GIDNLRMTRSLV-SVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIA 106 (232)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE--------SHHHHHHHHTTC-CSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEE
T ss_pred chHHHHHHHHHHCCCeEEEEC--------CHHHHHHHHHhc-CCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEE
Confidence 346777888888999998762 246788888887 889863 2 1 2 256789999999999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+..... ..| ..+.+..+.+++.++++++ .+.+..++.++..+|||.+.++
T Consensus 107 l~~~~~-----------~~p--~~l~~~i~~~~~~g~~v~~--~v~t~eea~~a~~~Gad~Ig~~ 156 (232)
T 3igs_A 107 VDGTAR-----------QRP--VAVEALLARIHHHHLLTMA--DCSSVDDGLACQRLGADIIGTT 156 (232)
T ss_dssp EECCSS-----------CCS--SCHHHHHHHHHHTTCEEEE--ECCSHHHHHHHHHTTCSEEECT
T ss_pred ECcccc-----------CCH--HHHHHHHHHHHHCCCEEEE--eCCCHHHHHHHHhCCCCEEEEc
Confidence 642110 012 1233444555566788888 7999999999999999999653
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.034 Score=54.96 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=70.0
Q ss_pred HHHHHHcCccEEEEeCCCCC--ch----hHHHHHHHHHHhC--CCceEEE-----c-cc---CC-----------HHHHH
Q 010640 253 LEHLVKAGVNVVVLDSSQGN--SS----FQIEMIKYAKKTY--PELDVIG-----G-NV---VT-----------MYQAQ 304 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~--~~----~~~~~i~~l~~~~--~~~~Vi~-----g-~V---~t-----------~e~a~ 304 (505)
++.+++.|+|++.+....+. .. .....+.++.+.+ -++|+++ + .+ .+ .+.++
T Consensus 116 ve~a~~~GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R 195 (332)
T 3iv3_A 116 IKRLKEAGADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMK 195 (332)
T ss_dssp HHHHHHTTCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHH
Confidence 66788999999877653321 11 2344454444432 1677654 2 11 12 12345
Q ss_pred HH--HHcCCCEEEEccCCcceeecccccccC-----cChHHHHHHHHHHHhhcCCcEE-ecCCCCCHHH----HHHHHHh
Q 010640 305 NL--IEAGVDGLRVGMGSGSICTTQEVCAVG-----RGQATAVYKVSSIAAQSGVPVI-ADGGISNSGH----IVKALVL 372 (505)
Q Consensus 305 ~l--~~aGad~I~v~~g~g~~~~~~~~~g~g-----~p~~~~l~~v~~~~~~~~ipvI-a~GGI~~~~d----i~kal~l 372 (505)
.+ .+.|+|.+++-. +|...+ +.|++ ...-++.....+......+|+| .+||. +..+ +..|+.+
T Consensus 196 ~~~~~elGaDv~Kve~-p~~~~~---v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~A~~a 270 (332)
T 3iv3_A 196 VFSAERFGIDVLKVEV-PVNMVY---VEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVFAHKA 270 (332)
T ss_dssp HHTSGGGCCSEEEECC-SSCGGG---BTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHHHHHH
T ss_pred HHhhcCcCCcEEEEec-CCChhh---hcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 55 467999999862 111110 11221 1223333334444455679965 79997 4444 4467789
Q ss_pred CC--CEEEecccc
Q 010640 373 GA--STVMMGSFL 383 (505)
Q Consensus 373 GA--~~V~~G~~f 383 (505)
|| .+|.+|+..
T Consensus 271 Ga~f~Gv~~GRnv 283 (332)
T 3iv3_A 271 GAKFNGVLCGRAT 283 (332)
T ss_dssp TCCCCEEEECHHH
T ss_pred CCCcceEEeeHHH
Confidence 99 999999874
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.037 Score=50.95 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=80.1
Q ss_pred ceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC--CHHH-HHHHHHcCCCE
Q 010640 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV--TMYQ-AQNLIEAGVDG 313 (505)
Q Consensus 237 l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~--t~e~-a~~l~~aGad~ 313 (505)
++++.+....++..+.++.+. .++|++.+..+.- ...-.+.++.+|+.+++.|+.+.... ..+. ++.+.++|+|+
T Consensus 3 li~a~D~~~~~~~~~~~~~~~-~~~diie~G~p~~-~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~ 80 (211)
T 3f4w_A 3 LQLALDELTLPEAMVFMDKVV-DDVDIIEVGTPFL-IREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADY 80 (211)
T ss_dssp EEEEECSCCHHHHHHHHHHHG-GGCSEEEECHHHH-HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred EEEEeCCCCHHHHHHHHHHhh-cCccEEEeCcHHH-HhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCE
Confidence 445555444445666666663 6899998743110 11224678888888667888663322 3454 88999999999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-CCCCCH-HHHHHHHHhCCCEEEecc
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-GGISNS-GHIVKALVLGASTVMMGS 381 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-GGI~~~-~di~kal~lGA~~V~~G~ 381 (505)
+.+... +....+.++.+.+++.+++++.+ -+..++ ..+.++..+|++.|.+..
T Consensus 81 v~v~~~---------------~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~~ 135 (211)
T 3f4w_A 81 VTVLGV---------------TDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHT 135 (211)
T ss_dssp EEEETT---------------SCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEEEEC
T ss_pred EEEeCC---------------CChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 977311 11223345556666677887763 345666 447788899999987753
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.035 Score=54.20 Aligned_cols=111 Identities=23% Similarity=0.221 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCccEEEEeC--------CCC-CchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccC
Q 010640 250 KERLEHLVKAGVNVVVLDS--------SQG-NSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMG 319 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~--------~~g-~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g 319 (505)
.+.++...++|++.+.+-. ..| ......+.++.+++.. ++||+++ .+...+.++.+..+|||+|..+..
T Consensus 31 ~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~aaGAD~Id~s~~ 109 (297)
T 4adt_A 31 VEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCI-SINVLAKVRIGHFVEAQILEELKVDMLDESEV 109 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHHcCCCEEEcCCC
Confidence 3778888889999987641 122 2223578888999887 8999986 456689999999999999932210
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
.....+ .+.+++ .+++++. ++.+..+..+++.+||++|.+..
T Consensus 110 ----~~~~~l--------------i~~i~~~~~g~~vvv--~v~~~~Ea~~a~~~Gad~I~v~g 153 (297)
T 4adt_A 110 ----LTMADE--------------YNHINKHKFKTPFVC--GCTNLGEALRRISEGASMIRTKG 153 (297)
T ss_dssp ----SCCSCS--------------SCCCCGGGCSSCEEE--EESSHHHHHHHHHHTCSEEEECC
T ss_pred ----CCHHHH--------------HHHHHhcCCCCeEEE--EeCCHHHHHHHHhCCCCEEEECC
Confidence 000000 111112 4688988 79999999999999999987763
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.019 Score=54.37 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV 263 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~ 263 (505)
...++.+.+.+.++..+|++. +....++.+.+.|+++
T Consensus 123 ~tv~aa~~L~~~Gf~Vlpy~~-------------------------------------------dd~~~akrl~~~G~~a 159 (265)
T 1wv2_A 123 ETLKAAEQLVKDGFDVMVYTS-------------------------------------------DDPIIARQLAEIGCIA 159 (265)
T ss_dssp HHHHHHHHHHTTTCEEEEEEC-------------------------------------------SCHHHHHHHHHSCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEeC-------------------------------------------CCHHHHHHHHHhCCCE
Confidence 356788888888998888652 1346678888999999
Q ss_pred EEEeCC---CCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 264 VVLDSS---QGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 264 I~i~~~---~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+..... .|......+.++.+++.. ++|||+ |++.+++++..+.+.|+|++.|+
T Consensus 160 VmPlg~pIGsG~Gi~~~~lI~~I~e~~-~vPVI~eGGI~TPsDAa~AmeLGAdgVlVg 216 (265)
T 1wv2_A 160 VMPLAGLIGSGLGICNPYNLRIILEEA-KVPVLVDAGVGTASDAAIAMELGCEAVLMN 216 (265)
T ss_dssp EEECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred EEeCCccCCCCCCcCCHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 966332 122222367888888864 899877 69999999999999999999886
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.057 Score=50.62 Aligned_cols=177 Identities=11% Similarity=0.045 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHCCCCe--eEEeeCCeeeeEEee-chhhhhhcCCCCCCCccCCCCcceEEE--eecCCccHHHHHHHHH
Q 010640 183 YDLGQIDEVLEKNDVDF--VVLEKDGERLDVVTR-EDVERLKGYPNLGKGTVGPDGKWMVGA--AIGTRESDKERLEHLV 257 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~--lpVvd~g~l~GiIt~-~dil~~~~~~~~~~~~~d~~~~l~v~a--~i~~~~~~~e~~~~li 257 (505)
..+.+.++.+.+.+.+. +=|.| |.++=.+|. -.+++.+.. ..+...+-+ .+..++ ..++.+.
T Consensus 18 ~~l~~~i~~~~~~g~d~iHvDvmD-g~fvpn~t~G~~~v~~lr~---------~~p~~~~dvhLmv~dp~---~~i~~~~ 84 (227)
T 1tqx_A 18 SKLAEETQRMESLGAEWIHLDVMD-MHFVPNLSFGPPVINNLKK---------YTKSIFFDVHLMVEYPE---KYVPLLK 84 (227)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEB-SSSSSCBCCCHHHHHHHGG---------GCSSCEEEEEEESSCGG---GGGGGCT
T ss_pred hhHHHHHHHHHHcCCCEEEEEEEe-CCcCcchhcCHHHHHHHHH---------hCCCCcEEEEEEEcCHH---HHHHHHH
Confidence 35788889998888775 44554 443334444 344444321 110122222 332222 2334444
Q ss_pred HcCccEEEEeCCCCCchhHHHHHH---HHHHhCCCceEEEc-ccC-CHHHHHHHHHcC-CCEEEE-ccCCcceeeccccc
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIK---YAKKTYPELDVIGG-NVV-TMYQAQNLIEAG-VDGLRV-GMGSGSICTTQEVC 330 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~---~l~~~~~~~~Vi~g-~V~-t~e~a~~l~~aG-ad~I~v-~~g~g~~~~~~~~~ 330 (505)
+ +|.+.+|...... .....++ .+++. +..+.+. +.. ..+..+.+..+| +|.|.+ +..+|-. ++
T Consensus 85 ~--Ad~itvH~ea~~~-~~~~~i~~~~~i~~~--G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~--gq--- 154 (227)
T 1tqx_A 85 T--SNQLTFHFEALNE-DTERCIQLAKEIRDN--NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFG--GQ--- 154 (227)
T ss_dssp T--SSEEEEEGGGGTT-CHHHHHHHHHHHHTT--TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCS--SC---
T ss_pred h--CCEEEEeecCCcc-CHHHHHHHHHHHHHc--CCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCC--Cc---
Confidence 4 9999998754321 2345666 77776 5555442 333 345566676766 999966 3444321 11
Q ss_pred ccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 331 AVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 331 g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+....+.-+.++++... +++|.++|||. ...+.++..+|||.+.+||.+..
T Consensus 155 ~f~~~~l~ki~~lr~~~~--~~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaIf~ 206 (227)
T 1tqx_A 155 SFMHDMMGKVSFLRKKYK--NLNIQVDGGLN-IETTEISASHGANIIVAGTSIFN 206 (227)
T ss_dssp CCCGGGHHHHHHHHHHCT--TCEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHT
T ss_pred ccchHHHHHHHHHHHhcc--CCeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC
Confidence 122234455555555443 68999999997 67999999999999999998653
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=96.08 E-value=0.13 Score=48.61 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.++ ..++|+.++.|-+...+..+..+.++.+++.. ++||+-|.. .++-....+..+|||+|-+-. .
T Consensus 66 p~~iA~-~~~~GA~aiSVLTd~~~F~Gs~~~L~~vr~~v-~lPvLrKDFiid~yQI~eAr~~GADaILLI~--------a 135 (258)
T 4a29_A 66 PIEYAK-FMERYAVGLSITTEEKYFNGSYETLRKIASSV-SIPILMSDFIVKESQIDDAYNLGADTVLLIV--------K 135 (258)
T ss_dssp HHHHHH-HHTTTCSEEEEECCSTTTCCCHHHHHHHHTTC-SSCEEEESCCCSHHHHHHHHHHTCSEEEEEG--------G
T ss_pred HHHHHH-HHhCCCeEEEEeCCCCCCCCCHHHHHHHHHhc-CCCEeeccccccHHHHHHHHHcCCCeeehHH--------h
Confidence 445554 55789999988665544455677888888887 899999875 578888888899999996531 1
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTE 388 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~E 388 (505)
.+ + -..+.+..+.+...+..++. =+.|..++.+|+.+||+.+++=.+=+.+-|
T Consensus 136 ~L-----~-~~~l~~l~~~A~~lGl~~Lv--EVh~~~El~rAl~~~a~iIGINNRnL~tf~ 188 (258)
T 4a29_A 136 IL-----T-ERELESLLEYARSYGMEPLI--LINDENDLDIALRIGARFIGIMSRDFETGE 188 (258)
T ss_dssp GS-----C-HHHHHHHHHHHHHTTCCCEE--EESSHHHHHHHHHTTCSEEEECSBCTTTCC
T ss_pred hc-----C-HHHHHHHHHHHHHHhHHHHH--hcchHHHHHHHhcCCCcEEEEeCCCccccc
Confidence 11 1 12344556667778888888 699999999999999999988766554443
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.083 Score=49.04 Aligned_cols=114 Identities=19% Similarity=0.123 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--------cc---CCHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--------NV---VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--------~V---~t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+.++|++.+.++. .+.++.+++.+ ++|++.. .+ .+.+.+..+.++|+|++.+
T Consensus 24 ~~~~~a~~~~~~Ga~~i~~~~--------~~~i~~i~~~~-~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l 94 (223)
T 1y0e_A 24 IMSKMALAAYEGGAVGIRANT--------KEDILAIKETV-DLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIAL 94 (223)
T ss_dssp HHHHHHHHHHHHTCSEEEEES--------HHHHHHHHHHC-CSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHHCCCeeeccCC--------HHHHHHHHHhc-CCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEE
Confidence 456778888899999997742 35677788876 7887521 11 2567888899999999977
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.... ...........+..+++... +.+++. ++.+..++.++..+|++.++++..
T Consensus 95 ~~~~--------~~~p~~~~~~~i~~~~~~~~--~~~v~~--~~~t~~e~~~~~~~G~d~i~~~~~ 148 (223)
T 1y0e_A 95 DATL--------QQRPKETLDELVSYIRTHAP--NVEIMA--DIATVEEAKNAARLGFDYIGTTLH 148 (223)
T ss_dssp ECSC--------SCCSSSCHHHHHHHHHHHCT--TSEEEE--ECSSHHHHHHHHHTTCSEEECTTT
T ss_pred eeec--------ccCcccCHHHHHHHHHHhCC--CceEEe--cCCCHHHHHHHHHcCCCEEEeCCC
Confidence 5211 00000011223333333221 677776 788999999999999999987754
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.07 Score=50.75 Aligned_cols=117 Identities=8% Similarity=0.084 Sum_probs=85.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC-CHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV-TMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~-t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+..+.+..+.+. +.++.+-+...+..+..+.++.+++.. ++||+.+... +.-....+..+|||+|-+-.
T Consensus 62 ~~~~iA~~y~~~-A~~IsVlTd~~~F~gs~~dL~~ir~~v-~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~-------- 131 (251)
T 1i4n_A 62 SLEDFIRMYDEL-ADAISILTEKHYFKGDPAFVRAARNLT-CRPILAKDFYIDTVQVKLASSVGADAILIIA-------- 131 (251)
T ss_dssp CHHHHHHHHHHH-CSEEEEECCCSSSCCCTHHHHHHHTTC-CSCEEEECCCCSTHHHHHHHHTTCSEEEEEG--------
T ss_pred CHHHHHHHHHHh-CCceEEEecccccCCCHHHHHHHHHhC-CCCEEEeeCCCCHHHHHHHHHcCCCEEEEec--------
Confidence 466777777777 888887554443444567778888876 8999988653 44456778899999996631
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh-CCCEEEeccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL-GASTVMMGSF 382 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l-GA~~V~~G~~ 382 (505)
.. .+ ...+.+..+.+++.+..+++ =+.|..++.+|+.+ |++.+++=.+
T Consensus 132 a~-----l~-~~~l~~l~~~a~~lGl~~lv--Ev~~~eE~~~A~~l~g~~iIGinnr 180 (251)
T 1i4n_A 132 RI-----LT-AEQIKEIYEAAEELGMDSLV--EVHSREDLEKVFSVIRPKIIGINTR 180 (251)
T ss_dssp GG-----SC-HHHHHHHHHHHHTTTCEEEE--EECSHHHHHHHHTTCCCSEEEEECB
T ss_pred cc-----CC-HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHhcCCCCEEEEeCc
Confidence 11 11 13455666777778899999 78899999999999 9998887654
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.018 Score=58.93 Aligned_cols=133 Identities=18% Similarity=0.163 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC------------------------chhHHHHHHHHHHhCCCceEEEc----cc--
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN------------------------SSFQIEMIKYAKKTYPELDVIGG----NV-- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~------------------------~~~~~~~i~~l~~~~~~~~Vi~g----~V-- 297 (505)
++.+.+..+.++|.|.|+||.+||+ .+-.++.++.+|+.++.-+|.+. +.
T Consensus 173 ~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~ 252 (400)
T 4gbu_A 173 EYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFN 252 (400)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred HHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEeccccccC
Confidence 3667778888999999999986642 13457888888888754466552 00
Q ss_pred --C----C--H----HHHHHHHHcC-----CCEEEEccCCc-ceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCC
Q 010640 298 --V----T--M----YQAQNLIEAG-----VDGLRVGMGSG-SICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGG 359 (505)
Q Consensus 298 --~----t--~----e~a~~l~~aG-----ad~I~v~~g~g-~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GG 359 (505)
. + . +.+..+...+ .+.+.+..... ..........+..+.... ++ +..++|||+.||
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---ir---~~~~~pvi~~G~ 326 (400)
T 4gbu_A 253 SMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDF---VY---SIWKGPVIRAGN 326 (400)
T ss_dssp TCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCSCCSTH---HH---HHCCSCEEEESS
T ss_pred CCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhhHHHHH---HH---HHhCCCEEEeCC
Confidence 0 0 1 1222333322 22332221000 000000000111111111 12 235799999999
Q ss_pred CCCHHHHHHHHHh-CCCEEEecccccCC
Q 010640 360 ISNSGHIVKALVL-GASTVMMGSFLAGS 386 (505)
Q Consensus 360 I~~~~di~kal~l-GA~~V~~G~~f~~~ 386 (505)
+.+..++++++.. +||+|.+|++|+.-
T Consensus 327 ~~~~~~~~~~~~~~~aDlV~~gR~~iad 354 (400)
T 4gbu_A 327 FALHPEVVREEVKDKRTLIGYGRFFISN 354 (400)
T ss_dssp CTTCHHHHHHHTTSTTEEEECCHHHHHC
T ss_pred CCChHHHHHHHHcCCCeEhHHHHHHHHC
Confidence 9998888888765 59999999999864
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.11 Score=48.24 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=89.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+...+.++.+.+.+..++ |-.+. ...-+..++.+.+. ++++-+.-+.|...|..+.++|+++|.. ..+
T Consensus 67 e~mi~eA~~L~~~~~nv~-IKIP~--T~eGl~A~~~L~~~--GI~vn~TlifS~~QA~~Aa~AGa~yISP-------fvg 134 (223)
T 3s1x_A 67 EGMVEEARKIHGLGDNAV-VKIPM--TEDGLRAIKTLSSE--HINTNCTLVFNPIQALLAAKAGVTYVSP-------FVG 134 (223)
T ss_dssp HHHHHHHHHHHHTCTTEE-EEEES--SHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHTTCSEEEE-------BSH
T ss_pred HHHHHHHHHHHHhCCCEE-EEeCC--CHHHHHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHcCCeEEEe-------ecc
Confidence 345666777777765443 32221 12335666677666 7888777788999999999999998832 333
Q ss_pred ccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
| ..+||.+....+.++.++.+.++ ..|++ ..+++..++..|..+|||.+-+...++
T Consensus 135 R-i~d~g~dG~~~v~~i~~~~~~~~~~T~Ila-AS~Rn~~~v~~aa~~G~d~~Tip~~vl 192 (223)
T 3s1x_A 135 R-LDDIGEDGMQIIDMIRTIFNNYIIKTQILV-ASIRNPIHVLRSAVIGADVVTVPFNVL 192 (223)
T ss_dssp H-HHHTTSCTHHHHHHHHHHHHHTTCCSEEEE-BSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred h-HhhcCCCHHHHHHHHHHHHHHcCCCCEEEE-EeCCCHHHHHHHHHcCCCEEEeCHHHH
Confidence 3 45678888888888888877654 44554 579999999999999999998886543
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.085 Score=50.38 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCccEEEEeC--------CCCC-chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVVVLDS--------SQGN-SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~--------~~g~-~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
..+.++.+.++|+.++..-- ..|. .....+.++.+++.. .+|||.+ -+....+|+.+..+|+|+|+-+-
T Consensus 20 ~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aV-sIPVm~k~righ~~EAqilea~GaD~IDese 98 (291)
T 3o07_A 20 TPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSV-SIPVMAKVRIGHFVEAQIIEALEVDYIDESE 98 (291)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTC-SSCEEEEEETTCHHHHHHHHHTTCSEEEEET
T ss_pred CHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhC-CCCeEEEEecCcHHHHHHHHHcCCCEEeccc
Confidence 34777778888998886531 1121 123468888899988 8999986 45678999999999999997651
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.. ........ +.+ .+.++|+++ |++|-.+..+++..||+++.
T Consensus 99 vl---tpad~~~~-----------I~k--~~f~vpfv~--~~~~l~EAlrri~eGA~mIr 140 (291)
T 3o07_A 99 VL---TPADWTHH-----------IEK--DKFKVPFVC--GAKDLGEALRRINEGAAMIR 140 (291)
T ss_dssp TS---CCSCSSCC-----------CCG--GGCSSCEEE--EESSHHHHHHHHHHTCSEEE
T ss_pred CC---CHHHHHHH-----------hhh--hcCCCcEEe--eCCCHHHHHHHHHCCCCEEE
Confidence 10 00000000 000 135789999 99999999999999999765
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.12 Score=51.84 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=71.9
Q ss_pred HHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 250 KERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 250 ~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
.+.+..+.++ |+.++. . .-......+.++++++.. +.|+.+. .+.+.+.++.+.++|+|+|.+....
T Consensus 59 ~~lA~avA~~GGlgii~--~-~~s~e~~~~~I~~vk~~~-~~pvga~ig~~~~e~a~~l~eaGad~I~ld~a~------- 127 (361)
T 3khj_A 59 HLMAVGMARLGGIGIIH--K-NMDMESQVNEVLKVKNSG-GLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAH------- 127 (361)
T ss_dssp HHHHHHHHHTTCEEEEC--S-SSCHHHHHHHHHHHHHTT-CCCCEEEECTTCHHHHHHHHHTTCSEEEECCSC-------
T ss_pred HHHHHHHHHcCCCeEEe--c-CCCHHHHHHHHHHHHhcc-CceEEEEeCCCHHHHHHHHHHcCcCeEEEeCCC-------
Confidence 3555555544 565553 2 112345666777777653 5665552 2334788999999999999874221
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
|.|. ..+..+.+..+..++|||+ |++.+..++.++..+|||+|.+|
T Consensus 128 -----G~~~-~~~~~i~~i~~~~~~~Viv-g~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 128 -----GHSL-NIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp -----CSBH-HHHHHHHHHHHHCCCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred -----CCcH-HHHHHHHHHHHhcCCcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence 1121 1112233333344799998 78899999999999999999986
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.13 Score=47.50 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+...+.++.+.+.+..++ |-.+. ...-+..++.+.+. ++++-+.-+.|...|..+.++|+++|.. ..+
T Consensus 65 e~mi~ea~~l~~~~~nv~-IKIP~--T~eGl~A~~~L~~~--GI~vn~TlifS~~Qa~~Aa~AGa~yISP-------fvg 132 (212)
T 3r8r_A 65 EEMIEEGKELAKIAPNIT-VKIPM--TSDGLKAVRALTDL--GIKTNVTLIFNANQALLAARAGATYVSP-------FLG 132 (212)
T ss_dssp HHHHHHHHHHHTTCTTEE-EEEES--SHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHHTCSEEEE-------BHH
T ss_pred HHHHHHHHHHHHhCCCEE-EEeCC--CHHHHHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHcCCeEEEe-------ccc
Confidence 345566667777665443 32221 12235666677666 7888777788999999999999998832 333
Q ss_pred ccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
| ..+||.|....+.++.++.+.++ -.-|..-.+++..++..|..+|||.+-+...++
T Consensus 133 R-i~d~~~dG~~~v~~i~~~~~~~~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip~~vl 190 (212)
T 3r8r_A 133 R-LDDIGHNGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVI 190 (212)
T ss_dssp H-HHHTTSCHHHHHHHHHHHHHHHTCCCEEEEBSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred h-hhhcCCChHHHHHHHHHHHHHcCCCCEEEEecCCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 3 45678888888999888877664 233434689999999999999999998886543
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.036 Score=64.46 Aligned_cols=69 Identities=10% Similarity=0.101 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc------------hhHHHHHHHHHHhC------CCceEEE-cccCCHHHHHHHHHc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS------------SFQIEMIKYAKKTY------PELDVIG-GNVVTMYQAQNLIEA 309 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~------------~~~~~~i~~l~~~~------~~~~Vi~-g~V~t~e~a~~l~~a 309 (505)
....+..+.++|+|+|.++...|.. ..+...+..+++.+ .++||++ |++.+..++.+++.+
T Consensus 1006 i~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaL 1085 (1479)
T 1ea0_A 1006 IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAML 1085 (1479)
T ss_dssp HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHc
Confidence 4456777889999999997754321 12345555555532 2588877 899999999999999
Q ss_pred CCCEEEEc
Q 010640 310 GVDGLRVG 317 (505)
Q Consensus 310 Gad~I~v~ 317 (505)
||+++-++
T Consensus 1086 GAdaV~iG 1093 (1479)
T 1ea0_A 1086 GAEEFGIG 1093 (1479)
T ss_dssp TCSEEECC
T ss_pred CCCeeeEc
Confidence 99999775
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.2 Score=46.40 Aligned_cols=128 Identities=9% Similarity=0.027 Sum_probs=80.0
Q ss_pred CcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHH-HHHHHHHcCC
Q 010640 235 GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMY-QAQNLIEAGV 311 (505)
Q Consensus 235 ~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e-~a~~l~~aGa 311 (505)
.+++++.+....++..+.++.+ +.++|++.++...-. ..-.+.++.+|+.+++.+++. +-...++ .++.+.++|+
T Consensus 7 ~~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~~~~~-~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGa 84 (218)
T 3jr2_A 7 PMIQIALDQTNLTDAVAVASNV-ASYVDVIEVGTILAF-AEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGA 84 (218)
T ss_dssp CEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHH-HHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTC
T ss_pred CCeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCcHHHH-hcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCC
Confidence 4567777765555566666664 668999988542100 111467888888876666643 2112233 4688899999
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEe-cCCCCCHHHHHHHHHhCCCEEEe
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIA-DGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa-~GGI~~~~di~kal~lGA~~V~~ 379 (505)
|++.+-. .+....+.++.+.+++.++..+. .=|+.|+.++..+..+|++.+.+
T Consensus 85 d~i~vh~---------------~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~ 138 (218)
T 3jr2_A 85 DWITVSA---------------AAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIY 138 (218)
T ss_dssp SEEEEET---------------TSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHHHTTCCEEEE
T ss_pred CEEEEec---------------CCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHHHHHcCccceee
Confidence 9996621 11122344455555666776653 33677899999999999997755
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.1 Score=47.84 Aligned_cols=125 Identities=19% Similarity=0.149 Sum_probs=72.3
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCC-HHH-HHHHHHcCCCE
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVT-MYQ-AQNLIEAGVDG 313 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t-~e~-a~~l~~aGad~ 313 (505)
+++.+....++..+.++.+.+ +++++.+...+- ...-.+.++.+++.+|+.|+++ + +.+ ++. ++.+.++|+|+
T Consensus 4 i~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~~-~~~g~~~i~~l~~~~~~~~i~~~l~-~~di~~~~~~~a~~~Gad~ 80 (207)
T 3ajx_A 4 QVAIDLLSTEAALELAGKVAE-YVDIIELGTPLI-KAEGLSVITAVKKAHPDKIVFADMK-TMDAGELEADIAFKAGADL 80 (207)
T ss_dssp EEEECCSCHHHHHHHHHHHGG-GCSEEEECHHHH-HHHCTHHHHHHHHHSTTSEEEEEEE-ECSCHHHHHHHHHHTTCSE
T ss_pred EEEeCCCCHHHHHHHHHHhhc-cCCEEEECcHHH-HhhCHHHHHHHHHhCCCCeEEEEEE-ecCccHHHHHHHHhCCCCE
Confidence 444443333445566666655 789988844210 1112356778888876777765 4 345 566 88899999999
Q ss_pred EEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEe-cCCCCCHHHHH-HHHHhCCCEEEec
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIA-DGGISNSGHIV-KALVLGASTVMMG 380 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa-~GGI~~~~di~-kal~lGA~~V~~G 380 (505)
+.+.... ....+..+.+.+++.+.++-. --...|+.+.+ .+..+|++.|.+.
T Consensus 81 v~vh~~~---------------~~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~ 134 (207)
T 3ajx_A 81 VTVLGSA---------------DDSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALGAKFVEMH 134 (207)
T ss_dssp EEEETTS---------------CHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHTTCSEEEEE
T ss_pred EEEeccC---------------ChHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHhCCCEEEEE
Confidence 9663111 112233455556555666522 11233777744 4457799998554
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.15 Score=52.72 Aligned_cols=119 Identities=10% Similarity=0.064 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC-CHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV-TMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~-t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+..+.+....+. +.+|.+-+...+..+..+.++.+++.. ++||+.+... +.-....+..+|||+|-+-.
T Consensus 69 ~~~~iA~~y~~~-A~~IsvLTd~~~F~gs~~dL~~vr~~v-~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~-------- 138 (452)
T 1pii_A 69 DPARIAAIYKHY-ASAISVLTDEKYFQGSFNFLPIVSQIA-PQPILCKDFIIDPYQIYLARYYQADACLLML-------- 138 (452)
T ss_dssp CHHHHHHHHTTT-CSEEEEECCSTTTCCCTTHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEET--------
T ss_pred CHHHHHHHHHhh-CcEEEEEecccccCCCHHHHHHHHHhc-CCCeEEEeccCCHHHHHHHHHcCCCEEEEEc--------
Confidence 456667766666 999988654443444456777888887 8999988653 55567778899999996631
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
..+ + ...+.+..+.+++.+..+++ =+.|..++.+|+.+||+.+++=.+=+
T Consensus 139 a~l-----~-~~~l~~l~~~a~~lgm~~Lv--Evh~~eE~~~A~~lga~iIGinnr~L 188 (452)
T 1pii_A 139 SVL-----D-DDQYRQLAAVAHSLEMGVLT--EVSNEEEQERAIALGAKVVGINNRDL 188 (452)
T ss_dssp TTC-----C-HHHHHHHHHHHHHTTCEEEE--EECSHHHHHHHHHTTCSEEEEESEET
T ss_pred ccC-----C-HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHHCCCCEEEEeCCCC
Confidence 111 1 13455666677778999999 89999999999999999998875533
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.079 Score=53.94 Aligned_cols=97 Identities=20% Similarity=0.188 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcC
Q 010640 274 SFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG 351 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ 351 (505)
....+.++++++. ++++++ +.-...+.++.+.++|+|++.+...+ . ...+..|.. ...++.+.++..+
T Consensus 142 ~~~~~~i~~~~~~--g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~---~----~~~~~~~~~-~~~~i~~l~~~~~ 211 (393)
T 2qr6_A 142 ELLSERIAQVRDS--GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTL---I----SAEHVNTGG-EALNLKEFIGSLD 211 (393)
T ss_dssp HHHHHHHHHHHHT--TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSS---C----CSSCCCC------CHHHHHHHCS
T ss_pred HHHHHHHHHHhhc--CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCc---c----ccccCCCcc-cHHHHHHHHHhcC
Confidence 3445566666665 566554 22224566777888999999764111 0 011212211 1112344445568
Q ss_pred CcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 352 VPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 352 ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
+|||+ ||+.++.++.+++.+|||+|.+|.
T Consensus 212 ~pvi~-ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 212 VPVIA-GGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp SCEEE-ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred CCEEE-CCcCCHHHHHHHHHcCCCEEEECC
Confidence 99999 999999999999999999999975
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.17 Score=48.68 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=76.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCC--------CCchhHHHHHHHHHHhCCC--ceEEE--cccCCHH----HHHHHHHcCCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ--------GNSSFQIEMIKYAKKTYPE--LDVIG--GNVVTMY----QAQNLIEAGVD 312 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~--------g~~~~~~~~i~~l~~~~~~--~~Vi~--g~V~t~e----~a~~l~~aGad 312 (505)
....++.+++.|++-|-+...- |+...+.+.++.+++...+ +.||+ +...+.+ ..+.+.++|+|
T Consensus 102 K~~Ea~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGAD 181 (297)
T 4eiv_A 102 VSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQGGDIISRAAVAALEGGAD 181 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCcHHHHHHHHHHHHHhCCC
Confidence 4455667888899988665543 2233455666677776533 34455 2233444 33557789999
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHh---------------------hcCCcEEec-CCCCCHHHHHHHH
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA---------------------QSGVPVIAD-GGISNSGHIVKAL 370 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~---------------------~~~ipvIa~-GGI~~~~di~kal 370 (505)
+|+-|.|-+. +..++..+...++..+ ..++.|=++ |||++..|..+.+
T Consensus 182 FVKTSTGf~~----------~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i 251 (297)
T 4eiv_A 182 FLQTSSGLGA----------THATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLM 251 (297)
T ss_dssp EEECCCSSSS----------CCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCCHHHHHHHHH
T ss_pred EEEcCCCCCC----------CCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHH
Confidence 9988744211 1133444443344332 235889999 9999999999999
Q ss_pred HhCCCEEEeccccc
Q 010640 371 VLGASTVMMGSFLA 384 (505)
Q Consensus 371 ~lGA~~V~~G~~f~ 384 (505)
.+... +|.-++
T Consensus 252 ~~~~e---lG~~wl 262 (297)
T 4eiv_A 252 QMIFE---NGPRSI 262 (297)
T ss_dssp HHHHH---HCGGGC
T ss_pred HHHHH---hCcccc
Confidence 98666 776665
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.2 Score=50.36 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=69.4
Q ss_pred HHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc---ccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 250 KERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG---NVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 250 ~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g---~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+.+..+.++ |+-++. .. -......+.++.+++.- ...+.++ +....+.++.+.++|+|+|.+....
T Consensus 60 ~~lA~avA~aGGlg~i~--~~-~s~e~~~~~i~~vk~~~-~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~----- 130 (366)
T 4fo4_A 60 ARLAIALAQEGGIGFIH--KN-MSIEQQAAQVHQVKISG-GLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSH----- 130 (366)
T ss_dssp HHHHHHHHHTTCEEEEC--SS-SCHHHHHHHHHHHHTTT-SCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSC-----
T ss_pred HHHHHHHHHcCCceEee--cC-CCHHHHHHHHHHHHhcC-ceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCC-----
Confidence 4555555555 555443 22 12355667777777642 2333332 1245789999999999999773111
Q ss_pred cccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
|.+. ..+..+.+..+.. ++|||+ |.+.+..++.++..+|||+|.+|
T Consensus 131 -------G~~~-~~~~~I~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 131 -------GHSE-GVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp -------TTSH-HHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred -------CCCH-HHHHHHHHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence 1121 1222223333333 688888 66999999999999999999995
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.23 Score=46.33 Aligned_cols=110 Identities=18% Similarity=0.133 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE---cc-----c---CCHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG---GN-----V---VTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~---g~-----V---~t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+.++|++.+.++. .+.++.+++.. ++|++. +. + .+.+.++.+.++|+|+|.+
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~~--------~~~i~~i~~~~-~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l 107 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRANS--------VRDIKEIQAIT-DLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAM 107 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEES--------HHHHHHHHTTC-CSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEE
T ss_pred hHHHHHHHHHHCCCcEeecCC--------HHHHHHHHHhC-CCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEE
Confidence 567889999999999998752 25677777776 788742 11 1 2567899999999999977
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
..... .+. .+......+..+++... +.+++. ++.+..++.+++.+|||.+
T Consensus 108 ~~~~~----~~~---~~~~~~~~i~~i~~~~~--~~~v~~--~~~t~~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 108 DCTKR----DRH---DGLDIASFIRQVKEKYP--NQLLMA--DISTFDEGLVAHQAGIDFV 157 (234)
T ss_dssp ECCSS----CCT---TCCCHHHHHHHHHHHCT--TCEEEE--ECSSHHHHHHHHHTTCSEE
T ss_pred ccccc----CCC---CCccHHHHHHHHHHhCC--CCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence 52110 000 01122334444444321 577777 8899999999999999999
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.078 Score=53.10 Aligned_cols=69 Identities=23% Similarity=0.433 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC---CCc--------hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ---GNS--------SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~---g~~--------~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~ 315 (505)
+..+.++.+.++|++.+.++... |.+ ...++.++.+++.++++||++ |++.|.+++..+.+ |+|++.
T Consensus 145 ~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 145 GLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 35677888899999999997632 211 124788899999877899877 88899999999998 999998
Q ss_pred Ec
Q 010640 316 VG 317 (505)
Q Consensus 316 v~ 317 (505)
++
T Consensus 224 iG 225 (350)
T 3b0p_A 224 LG 225 (350)
T ss_dssp EC
T ss_pred EC
Confidence 86
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.046 Score=51.85 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+...+.|+|.+.+- ..+. ..+ ..+....+. +.++...+|+-..|||++-.++.+.|.+||+-|.
T Consensus 34 ~~~a~~~~~~gad~lhvvDld~a-------~~~-~~~~~~~i~---~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVi 102 (243)
T 4gj1_A 34 LKKFKEYEKAGAKELHLVDLTGA-------KDP-SKRQFALIE---KLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV 102 (243)
T ss_dssp HHHHHHHHHHTCCEEEEEEHHHH-------HCG-GGCCHHHHH---HHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHCCCCEEEEEecCcc-------ccc-chhHHHHHH---HHHHhcCCCeEeccccccHHHHHHHHHcCCCEEE
Confidence 356777888999987552 1110 011 112334443 3444567999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+||....
T Consensus 103 i~t~a~~ 109 (243)
T 4gj1_A 103 IGSMAIK 109 (243)
T ss_dssp ECTTTTT
T ss_pred Ecccccc
Confidence 9997654
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.24 Score=49.33 Aligned_cols=70 Identities=16% Similarity=0.323 Sum_probs=55.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC--C-----CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ--G-----NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~--g-----~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
++..+.++.+.++|+|++.++... . .....++.++.+++.+ ++||++ |.+.+.+++..+++.| +|+|.++
T Consensus 229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iG 307 (340)
T 3gr7_A 229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREA-DIPTGAVGLITSGWQAEEILQNGRADLVFLG 307 (340)
T ss_dssp GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEEec
Confidence 457788899999999999986421 0 1123567888899987 788877 7888999999999999 9999775
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.29 Score=48.34 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=52.0
Q ss_pred HHHHHHHHcCccEEEEeCC--CCC--chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 251 ERLEHLVKAGVNVVVLDSS--QGN--SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~--~g~--~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+.+..+.+.|+|.+.++.. .|+ ....++.+..+++.. ++||++ |++.+.+++..+..+|++++.++
T Consensus 135 ~~a~~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vG 205 (326)
T 3bo9_A 135 SLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMG 205 (326)
T ss_dssp HHHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 5566778899999999762 222 124677888888776 788876 88999999999999999999986
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.19 Score=49.81 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC----------------CCc-----hhHHHHHHHHHHhCC-CceEEE-cccCCHHHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ----------------GNS-----SFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQ 304 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~----------------g~~-----~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~ 304 (505)
+..+.++.+.++|+|.|.++... |.+ ...++.++.+++..+ ++||++ |++.+.+++.
T Consensus 226 ~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~ 305 (336)
T 1f76_A 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAR 305 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHH
Confidence 35667888999999999986431 111 123577778887764 688876 8999999999
Q ss_pred HHHHcCCCEEEEc
Q 010640 305 NLIEAGVDGLRVG 317 (505)
Q Consensus 305 ~l~~aGad~I~v~ 317 (505)
+++.+|||+|.++
T Consensus 306 ~~l~~GAd~V~ig 318 (336)
T 1f76_A 306 EKIAAGASLVQIY 318 (336)
T ss_dssp HHHHHTCSEEEES
T ss_pred HHHHCCCCEEEee
Confidence 9999999999775
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=94.29 E-value=0.3 Score=49.15 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC----------------CCc-----hhHHHHHHHHHHhCC-CceEEE-cccCCHHHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ----------------GNS-----SFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQ 304 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~----------------g~~-----~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~ 304 (505)
+..+.++.+.++|+|.++++.+. |.+ ...++.++.+++.++ ++|||+ |++.|.+++.
T Consensus 235 ~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~ 314 (367)
T 3zwt_A 235 DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL 314 (367)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHH
Confidence 45667888889999999986432 111 113578888988875 688876 8999999999
Q ss_pred HHHHcCCCEEEEc
Q 010640 305 NLIEAGVDGLRVG 317 (505)
Q Consensus 305 ~l~~aGad~I~v~ 317 (505)
+++.+|||++.++
T Consensus 315 ~~l~~GAd~V~vg 327 (367)
T 3zwt_A 315 EKIRAGASLVQLY 327 (367)
T ss_dssp HHHHHTCSEEEES
T ss_pred HHHHcCCCEEEEC
Confidence 9999999999886
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.031 Score=50.47 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.5
Q ss_pred cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 350 SGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 350 ~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.++|+|+.|+|++.+|+.+ +.+||++|.-|+.=
T Consensus 148 ~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~ 180 (188)
T 1vkf_A 148 PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRI 180 (188)
T ss_dssp TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHH
T ss_pred cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHH
Confidence 5789999999999999999 99999999999763
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.27 Score=50.12 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCC--------------Cc-----hhHHHHHHHHHHhCC-CceEEE-cccCCHHHHHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQG--------------NS-----SFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNL 306 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g--------------~~-----~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l 306 (505)
+..+.++.+.++|+|.|+++.+.. .+ ...++.++.+++... ++|||. |+|.+.++|.++
T Consensus 284 ~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~ 363 (415)
T 3i65_A 284 QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEK 363 (415)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH
Confidence 356778888999999998865321 11 123578888888764 588876 899999999999
Q ss_pred HHcCCCEEEEc
Q 010640 307 IEAGVDGLRVG 317 (505)
Q Consensus 307 ~~aGad~I~v~ 317 (505)
+.+|||++.++
T Consensus 364 l~aGAd~VqIg 374 (415)
T 3i65_A 364 IEAGASVCQLY 374 (415)
T ss_dssp HHHTEEEEEES
T ss_pred HHcCCCEEEEc
Confidence 99999999886
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.17 Score=50.33 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCch----------h--HHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEE
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSS----------F--QIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~----------~--~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v 316 (505)
.+.++.+.++|+|.|.+....|... . .++.+.++++.. ++||++ |++.+..++.+++.+|||++.+
T Consensus 160 ~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 160 PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp HHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 4678889999999999843222110 1 477788888876 899987 8999999999999999999988
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
+
T Consensus 239 G 239 (336)
T 1ypf_A 239 G 239 (336)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.54 Score=46.96 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcc--cCCHHHH----HHHHHcCCCEEEEccC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGN--VVTMYQA----QNLIEAGVDGLRVGMG 319 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~--V~t~e~a----~~l~~aGad~I~v~~g 319 (505)
++..+.+..+.++|.+.+-++..++......+.++.+|+.+ ++.++.+.- --+.+++ +.+.+.|++.|.-..
T Consensus 146 ~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P~- 224 (359)
T 1mdl_A 146 KLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIEEPT- 224 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEECCS-
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEECCC-
Confidence 44556677788899999999876544456788889999887 578887731 1255544 556678888774211
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
.......+. +..+..++||++++.+.+..++.+++..| +|+|++...
T Consensus 225 -------------~~~~~~~~~---~l~~~~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~ 272 (359)
T 1mdl_A 225 -------------LQHDYEGHQ---RIQSKLNVPVQMGENWLGPEEMFKALSIGACRLAMPDAM 272 (359)
T ss_dssp -------------CTTCHHHHH---HHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred -------------ChhhHHHHH---HHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecch
Confidence 011233333 33445679999999999999999999987 888888643
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.37 Score=48.41 Aligned_cols=119 Identities=8% Similarity=0.058 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEccC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGMG 319 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~g 319 (505)
++..+.+..+.+.|.+.+-+...++......+.++.+|+.+ ++.++.+. .--+.+++ +.+.+.|++.|.-..
T Consensus 148 e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP~- 226 (371)
T 2ovl_A 148 ADLKTQADRFLAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIEEPT- 226 (371)
T ss_dssp HHHHHHHHHHHHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEECCS-
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCC-
Confidence 44566777788899999998876544456778889999887 57888773 12255554 445557888774211
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
.......+..++ +..++||++++.+.+..++.+++..| +|+|++...
T Consensus 227 -------------~~~d~~~~~~l~---~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 274 (371)
T 2ovl_A 227 -------------IPDDLVGNARIV---RESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVS 274 (371)
T ss_dssp -------------CTTCHHHHHHHH---HHHCSCEEECTTCCSHHHHHHHHHHTCCSEECCCTT
T ss_pred -------------CcccHHHHHHHH---hhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCcc
Confidence 011233343333 34579999999999999999999887 889888643
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.54 Score=46.36 Aligned_cols=183 Identities=17% Similarity=0.179 Sum_probs=112.6
Q ss_pred eeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcC-CCC-HHHHHHHHHhhhccCCccccCCCee--EeCC--
Q 010640 46 STRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHS-NCT-AADQARLVVSAKSRRVPIFSSSLDV--FKAP-- 119 (505)
Q Consensus 46 ~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~-~~~-~~~~~~~v~~v~~~~~~~~~~p~~~--~v~~-- 119 (505)
.+++|..+.+++|+|++||.+++..+++.++++.|++|++.. ..+ ++...+.++++++..+ .|..+ .+++
T Consensus 5 ~~~~~~~l~~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~----~p~~v~l~v~~~~ 80 (328)
T 2gjl_A 5 RTRFTETFGVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTD----RPFGVNLTLLPTQ 80 (328)
T ss_dssp CCHHHHHHTCSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCS----SCCEEEEEECCCS
T ss_pred hhhHHHHhCCCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcC----CCeEEEEeccccc
Confidence 456788888999999999999999999999999999999853 344 7776666776654332 23111 1110
Q ss_pred -CCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCC
Q 010640 120 -DGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVD 198 (505)
Q Consensus 120 -~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~ 198 (505)
+....+.++.+.+ ...+.+.++.+.+ .+..+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~---------------------------------------~g~d~V~~~~g~p-~~~~~~l~~~gi- 119 (328)
T 2gjl_A 81 KPVPYAEYRAAIIE---------------------------------------AGIRVVETAGNDP-GEHIAEFRRHGV- 119 (328)
T ss_dssp SCCCHHHHHHHHHH---------------------------------------TTCCEEEEEESCC-HHHHHHHHHTTC-
T ss_pred cCccHHHHHHHHHh---------------------------------------cCCCEEEEcCCCc-HHHHHHHHHcCC-
Confidence 1112222222111 0001222222222 233333333322
Q ss_pred eeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCC--CCc---
Q 010640 199 FVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQ--GNS--- 273 (505)
Q Consensus 199 ~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~--g~~--- 273 (505)
.+...+. ..+.+..+.+.|+|.+.++... |+.
T Consensus 120 ---------------------------------------~vi~~v~----t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~ 156 (328)
T 2gjl_A 120 ---------------------------------------KVIHKCT----AVRHALKAERLGVDAVSIDGFECAGHPGED 156 (328)
T ss_dssp ---------------------------------------EEEEEES----SHHHHHHHHHTTCSEEEEECTTCSBCCCSS
T ss_pred ---------------------------------------CEEeeCC----CHHHHHHHHHcCCCEEEEECCCCCcCCCCc
Confidence 2222332 2245666788999999996532 231
Q ss_pred -hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 274 -SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 274 -~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
...++.++.+++.. ++||++ |++.+.+++..+..+|+|++.++
T Consensus 157 ~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~vG 201 (328)
T 2gjl_A 157 DIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINMG 201 (328)
T ss_dssp CCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred cccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 24567888888776 788876 78889999999999999999986
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.45 Score=47.78 Aligned_cols=211 Identities=18% Similarity=0.189 Sum_probs=123.0
Q ss_pred eeeecCcccccceEEEccchh-hhHHHHHHHHHHcCCeeEEcCC-CCHHHHHHHHHhhhccCCccccCCCeeE--eCCCC
Q 010640 46 STRLTRNIDLSLPCVASPMDT-VTEDYMAAAMAALGGIGIVHSN-CTAADQARLVVSAKSRRVPIFSSSLDVF--KAPDG 121 (505)
Q Consensus 46 ~~~lt~~~~l~~Pli~a~m~~-vt~~~ma~al~~~Gg~g~i~~~-~~~~~~~~~v~~v~~~~~~~~~~p~~~~--v~~~~ 121 (505)
+|++|..+ .+|+|++||.. ++..+|+.++++.||+|++... .+++...+.+++++...+ .|+.+. +....
T Consensus 2 ~t~~~~~~--~~Pii~apMaggvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~~----~p~gVnl~~~~~~ 75 (369)
T 3bw2_A 2 SSALTDLF--PLPIVQAPMAGGVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLTG----RPFGVNVFMPQPE 75 (369)
T ss_dssp -CTTTTSS--SSSEEECCCTTTTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHCC----SCEEEEEECCCCC
T ss_pred CchhhhhC--cCCEEeCCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhCC----CCeEEEEecCCCC
Confidence 56777766 89999999984 9999999999999999999754 588888788877765432 331121 11110
Q ss_pred -----CHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCC
Q 010640 122 -----CINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKND 196 (505)
Q Consensus 122 -----tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~ 196 (505)
...+..+.+... .. ....+ +..+ .+..+..+.+.++.+.+.+
T Consensus 76 ~~~~~~~~~~~~~l~~~----~~---------------------~~g~~---~~~~-----~~~~~~~~~~~~~~~~~~g 122 (369)
T 3bw2_A 76 LAESGAVEVYAHQLAGE----AA---------------------WYETE---LGDP-----DGGRDDGYDAKLAVLLDDP 122 (369)
T ss_dssp C---CHHHHHHHHTHHH----HH---------------------HTTCC---CCCS-----CSCSSTTHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHH----HH---------------------HcCCC---cCcc-----cccccccHHHHHHHHHhcC
Confidence 011111111110 00 00000 0000 0112334567777777766
Q ss_pred CCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCC--CC--
Q 010640 197 VDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQ--GN-- 272 (505)
Q Consensus 197 i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~--g~-- 272 (505)
.+.+-+- -+.. ..++++.... . .+.+...+.+ .+.+..+.+.|+|++.++... |+
T Consensus 123 ~~~V~~~-~g~~-----~~~~i~~~~~---------~--g~~v~~~v~t----~~~a~~a~~~GaD~i~v~g~~~GGh~g 181 (369)
T 3bw2_A 123 VPVVSFH-FGVP-----DREVIARLRR---------A--GTLTLVTATT----PEEARAVEAAGADAVIAQGVEAGGHQG 181 (369)
T ss_dssp CSEEEEE-SSCC-----CHHHHHHHHH---------T--TCEEEEEESS----HHHHHHHHHTTCSEEEEECTTCSEECC
T ss_pred CCEEEEe-CCCC-----cHHHHHHHHH---------C--CCeEEEECCC----HHHHHHHHHcCCCEEEEeCCCcCCcCC
Confidence 6533221 0100 1123332211 1 1344444432 345677888999999996531 11
Q ss_pred -c----------hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 273 -S----------SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 273 -~----------~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
. ...++.++.+++.. ++||++ |++.+.+.+..++.+|+|++.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~~~~~~l~~GAd~V~vG 237 (369)
T 3bw2_A 182 THRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGGQIAAVLAAGADAAQLG 237 (369)
T ss_dssp CSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred CcccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 1 23478888888876 788876 78889999999999999999886
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.7 Score=46.61 Aligned_cols=119 Identities=13% Similarity=0.108 Sum_probs=82.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCCHHHH----HHHHHcCCCEEEEccC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGMG 319 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~g 319 (505)
.+...+.+..+.++|.+.+-+.... ......+.++.+|+.+++.++.+. .--+.+++ +.+.+.|++.|.-..
T Consensus 148 ~e~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iEqP~- 225 (384)
T 2pgw_A 148 AEELARDAAVGHAQGERVFYLKVGR-GEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIEQPT- 225 (384)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCS-
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCC-CHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEeCCC-
Confidence 4456677778888999999987643 345567888889988766777663 11255554 455567888874211
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
. ......+..+ .+..++||++++.+.+..++.+++..| +|+|++...
T Consensus 226 ----------~---~~~~~~~~~l---~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~ 273 (384)
T 2pgw_A 226 ----------V---SWSIPAMAHV---REKVGIPIVADQAAFTLYDVYEICRQRAADMICIGPR 273 (384)
T ss_dssp ----------C---TTCHHHHHHH---HHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred ----------C---hhhHHHHHHH---HhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcch
Confidence 0 1123333333 344679999999999999999999987 899998543
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.49 Score=45.43 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCccEEEEeCC---CC----CchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSS---QG----NSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~---~g----~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+.+..++-..+. .| .+....+.++.+|+.. ++|+++| ++.++++++.+...|+|+++||
T Consensus 162 ~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 162 SDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD-APPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp CHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 447787787777666644221 22 2345678889998886 7899885 7789999998999999999996
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.23 Score=51.18 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=58.4
Q ss_pred EEEeecCCc---cHHHHHHHHHHcCccEEEEeCCCC--------------Cc-----hhHHHHHHHHHHhCC-CceEEE-
Q 010640 239 VGAAIGTRE---SDKERLEHLVKAGVNVVVLDSSQG--------------NS-----SFQIEMIKYAKKTYP-ELDVIG- 294 (505)
Q Consensus 239 v~a~i~~~~---~~~e~~~~lieaGad~I~i~~~~g--------------~~-----~~~~~~i~~l~~~~~-~~~Vi~- 294 (505)
+.+.+.... +..+.++.+.++|+|.|.++.... .+ ...++.++.+++..+ ++|||.
T Consensus 300 V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~ 379 (443)
T 1tv5_A 300 VFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIAS 379 (443)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEE
Confidence 555554321 456678888999999998865422 11 113678888888864 688876
Q ss_pred cccCCHHHHHHHHHcCCCEEEEc
Q 010640 295 GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 295 g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|+|.+.++|.+.+.+|||+|.++
T Consensus 380 GGI~s~~DA~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 380 GGIFSGLDALEKIEAGASVCQLY 402 (443)
T ss_dssp SSCCSHHHHHHHHHTTEEEEEES
T ss_pred CCCCCHHHHHHHHHcCCCEEEEc
Confidence 89999999999999999999775
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.28 Score=46.56 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=49.0
Q ss_pred HHHHHHHHcCccEEEEeCC---CCCchhHHHHHHHHHHhCCC-ceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 251 ERLEHLVKAGVNVVVLDSS---QGNSSFQIEMIKYAKKTYPE-LDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~---~g~~~~~~~~i~~l~~~~~~-~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++.+.+.|++++.--.+ .|......+.++.+++..++ +|||+ |++.+++++..+.+.|+|++.|+
T Consensus 136 ~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 136 VLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp HHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6677788889999844221 12222235667888883346 88876 79999999999999999999886
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.48 Score=46.28 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCccEE-EEe-----C-C-CCC-chhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVV-VLD-----S-S-QGN-SSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I-~i~-----~-~-~g~-~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~ 318 (505)
..+.++.+.++|++++ .++ . . .|. .....+.++.+++.+ ++|++++.- ...+.++.+.++|+|+|...
T Consensus 30 ~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~-~iPv~~k~r~g~~~~~~~~~a~GAd~V~~~- 107 (305)
T 2nv1_A 30 NAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAV-SIPVMAKARIGHIVEARVLEAMGVDYIDES- 107 (305)
T ss_dssp SHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHC-SSCEEEEECTTCHHHHHHHHHHTCSEEEEC-
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhC-CCCEEecccccchHHHHHHHHCCCCEEEEe-
Confidence 4578888899999999 443 1 1 120 112356777788776 789887532 33788888999999999521
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
..... .... ...+ +...+++++. ++.+..++.+++.+||+.|.+
T Consensus 108 ~~l~~---~~~~-----------~~i~-~~~~g~~v~~--~~~~~~e~~~a~~~Gad~V~~ 151 (305)
T 2nv1_A 108 EVLTP---ADEE-----------FHLN-KNEYTVPFVC--GCRDLGEATRRIAEGASMLRT 151 (305)
T ss_dssp TTSCC---SCSS-----------CCCC-GGGCSSCEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred ccCCH---HHHH-----------HHHH-HhccCCcEEE--EeCCHHHHHHHHHCCCCEEEe
Confidence 10000 0000 0011 2245688888 889999999999999999988
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.078 Score=56.53 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH-----------HHHH
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS-----------GHIV 367 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~-----------~di~ 367 (505)
.+.|+.+.+.|+|.+.+. ..+..... ...+ ..+..+.+.++...+||+..|||++. .++.
T Consensus 283 ~~~A~~~~~~Ga~~l~~~dl~~~~~~~------~~~~--~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~ 354 (555)
T 1jvn_A 283 VQLAQKYYQQGADEVTFLNITSFRDCP------LKDT--PMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVAS 354 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCC------GGGC--HHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccccc------CCCc--hHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHH
Confidence 356788888999988663 21110000 0011 12333445555678999999999998 4499
Q ss_pred HHHHhCCCEEEeccccc
Q 010640 368 KALVLGASTVMMGSFLA 384 (505)
Q Consensus 368 kal~lGA~~V~~G~~f~ 384 (505)
+.+.+||+.|.+|+...
T Consensus 355 ~~l~aGad~V~igt~~~ 371 (555)
T 1jvn_A 355 LYFRSGADKVSIGTDAV 371 (555)
T ss_dssp HHHHHTCSEEEECHHHH
T ss_pred HHHHcCCCEEEECCHHh
Confidence 99999999999998753
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=93.43 E-value=1.1 Score=44.64 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHcCccEEEEeC--------C----C----------------CCchhHHHHHHHHHHhCCCceEEEcccC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDS--------S----Q----------------GNSSFQIEMIKYAKKTYPELDVIGGNVV 298 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~--------~----~----------------g~~~~~~~~i~~l~~~~~~~~Vi~g~V~ 298 (505)
+...+.++.+.++|+|++-++. . . +.+......++..++.. +++++. ++.
T Consensus 35 e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~-Gi~~~s-t~~ 112 (349)
T 2wqp_A 35 KTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESK-GMIFIS-TLF 112 (349)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT-TCEEEE-EEC
T ss_pred HHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHh-CCeEEE-eeC
Confidence 3456667778889999998852 1 1 12223344444445454 677765 899
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH----HhCC
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL----VLGA 374 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal----~lGA 374 (505)
+.+.+..+.+.|+|++.++. ++..+ +..|.. +.+.+.|||.+=|..|-.++..|. ..|.
T Consensus 113 d~~svd~l~~~~v~~~KI~S--------~~~~n-----~~LL~~----va~~gkPviLstGmat~~Ei~~Ave~i~~~G~ 175 (349)
T 2wqp_A 113 SRAAALRLQRMDIPAYKIGS--------GECNN-----YPLIKL----VASFGKPIILSTGMNSIESIKKSVEIIREAGV 175 (349)
T ss_dssp SHHHHHHHHHHTCSCEEECG--------GGTTC-----HHHHHH----HHTTCSCEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhcCCCEEEECc--------ccccC-----HHHHHH----HHhcCCeEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999963 22222 222322 234689999999999999998876 3566
Q ss_pred CEEEe
Q 010640 375 STVMM 379 (505)
Q Consensus 375 ~~V~~ 379 (505)
+.+.+
T Consensus 176 ~iiLl 180 (349)
T 2wqp_A 176 PYALL 180 (349)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 54444
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.37 Score=44.58 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=68.5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhH---HHHHHHHHH---hCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQ---IEMIKYAKK---TYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGS 322 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~---~~~i~~l~~---~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~ 322 (505)
..+.++.+.+.|++++.+....+..... .+.++.+++ .+ ++++++- +.+..+.++|+|++.++..
T Consensus 33 ~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~v~v~v~-----~~~~~a~~~gad~v~l~~~--- 103 (227)
T 2tps_A 33 PVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREA-GVPFIVN-----DDVELALNLKADGIHIGQE--- 103 (227)
T ss_dssp HHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHH-TCCEEEE-----SCHHHHHHHTCSEEEECTT---
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHc-CCeEEEc-----CHHHHHHHcCCCEEEECCC---
Confidence 6678889999999999987544433333 444444443 22 5777763 2345677899999966310
Q ss_pred eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 323 ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 323 ~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. +. +.++++ ..+. ++..-.+.+..++.++...|||.+.+|..|-
T Consensus 104 ----------~-~~---~~~~~~---~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~ 147 (227)
T 2tps_A 104 ----------D-AN---AKEVRA---AIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYP 147 (227)
T ss_dssp ----------S-SC---HHHHHH---HHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSC
T ss_pred ----------c-cC---HHHHHH---hcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcC
Confidence 0 11 222222 2233 3331124789999999999999999987663
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.45 Score=47.44 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=121.3
Q ss_pred CCcccceeecCCC-CCCCCCCeeeeeeecCcccccceEEEccchhhh-------HHHHHHHHHHcCCeeEEcCCCCH--H
Q 010640 23 SYTYDDVIFLPHY-IDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVT-------EDYMAAAMAALGGIGIVHSNCTA--A 92 (505)
Q Consensus 23 ~~~~~d~~l~p~~-~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt-------~~~ma~al~~~Gg~g~i~~~~~~--~ 92 (505)
...|+++.|+|.. +++..+++++.+++. +.++..|++.|||..++ +..++.+..+.| +++....++. +
T Consensus 22 ~~~f~~~~l~p~~l~~~~~~~~d~~~~i~-g~~~~~P~~iApm~g~~~~~~~~~~~~~a~aa~~~G-~~~~~~~~~~~l~ 99 (349)
T 1p0k_A 22 ETGLDDITFVHVSLPDLALEQVDISTKIG-ELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAG-IPLAVGSQMSALK 99 (349)
T ss_dssp CCSGGGEEECCCSCCCCCGGGCBCCEEET-TEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHT-CCEECCCCTTTTT
T ss_pred cCccceEEEEccccCCCCcccCCceeEEC-CcccCCceEEcCccccchhhhhHHHHHHHHHHHHcC-CcEEeccchhccc
Confidence 5679999999986 445557789999987 78899999999996555 445666655555 5544333211 1
Q ss_pred H--HHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce-EEEEeCCCCCCeEEEEEecccccccccccccccc
Q 010640 93 D--QARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY-VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFD 168 (505)
Q Consensus 93 ~--~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~-~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~ 168 (505)
+ ....++.++... ...|....+..+.+..+..+.+.. +. ...++- . . ..+
T Consensus 100 ~~~~~~~~~~~~~~~---~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~--------------------~--~-~~~ 153 (349)
T 1p0k_A 100 DPSERLSYEIVRKEN---PNGLIFANLGSEATAAQAKEAVEMIGANALQIHL--------------------N--V-IQE 153 (349)
T ss_dssp CHHHHHHHHHHHHHC---SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEE--------------------C--T-TTT
T ss_pred CcccccceehhhhhC---CCceeEEeecCCCCHHHHHHHHHhcCCCeEEecc--------------------c--c-hhh
Confidence 1 111122122111 013411234434455555554443 33 222210 0 0 000
Q ss_pred ccccCCCceEecCCC-CHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCc
Q 010640 169 YMRDCSSNVSVPANY-DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRE 247 (505)
Q Consensus 169 im~~~~~~~~v~~~~-~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~ 247 (505)
...+ ...++. ...+.++.+.+. . .+||+ .......
T Consensus 154 ~~~~-----~~~~~~~~~~~~i~~vr~~-~-~~Pv~-------------------------------------vK~~~~~ 189 (349)
T 1p0k_A 154 IVMP-----EGDRSFSGALKRIEQICSR-V-SVPVI-------------------------------------VKEVGFG 189 (349)
T ss_dssp C-------------CTTHHHHHHHHHHH-C-SSCEE-------------------------------------EEEESSC
T ss_pred hcCC-----CCCcchHHHHHHHHHHHHH-c-CCCEE-------------------------------------EEecCCC
Confidence 1110 001111 144555555432 1 23432 1110010
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCC--------------------CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQG--------------------NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNL 306 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g--------------------~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l 306 (505)
...+.+..+.++|+|.|.+....| ......+.+..+++..+++||++ |++.+.+++.++
T Consensus 190 ~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~ 269 (349)
T 1p0k_A 190 MSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKA 269 (349)
T ss_dssp CCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 124667888899999998853211 11234556777777655789877 899999999999
Q ss_pred HHcCCCEEEEc
Q 010640 307 IEAGVDGLRVG 317 (505)
Q Consensus 307 ~~aGad~I~v~ 317 (505)
+.+|||++.++
T Consensus 270 l~~GAd~V~iG 280 (349)
T 1p0k_A 270 IALGASCTGMA 280 (349)
T ss_dssp HHTTCSEEEEC
T ss_pred HHcCCCEEEEc
Confidence 99999999875
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.88 Score=45.79 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=82.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC------CchhHHHHHHHHHHhC-CCceEEEcc--cCCHHHH----HHHHHcCCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG------NSSFQIEMIKYAKKTY-PELDVIGGN--VVTMYQA----QNLIEAGVD 312 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g------~~~~~~~~i~~l~~~~-~~~~Vi~g~--V~t~e~a----~~l~~aGad 312 (505)
+++..+.++.+.++|.+.+-++..++ ......+.++.+|+.+ +++++++.. --+.+++ +.+.+.|++
T Consensus 150 ~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~ 229 (382)
T 1rvk_A 150 PEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFD 229 (382)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 34466777778888999999987654 3456778888898877 578888731 1255554 445567888
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC-HHHHHHHHHhC-CCEEEecc
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN-SGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~-~~di~kal~lG-A~~V~~G~ 381 (505)
.|.-.. . ......+..+ .+..++||++++.+.+ ..++.+++..| +|+|++-.
T Consensus 230 ~iE~P~-----------~---~~~~~~~~~l---~~~~~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~ 283 (382)
T 1rvk_A 230 WIEEPM-----------D---EQSLSSYKWL---SDNLDIPVVGPESAAGKHWHRAEWIKAGACDILRTGV 283 (382)
T ss_dssp EEECCS-----------C---TTCHHHHHHH---HHHCSSCEEECSSCSSHHHHHHHHHHTTCCSEEEECH
T ss_pred EEeCCC-----------C---hhhHHHHHHH---HhhCCCCEEEeCCccCcHHHHHHHHHcCCCCEEeeCc
Confidence 774221 0 0123333333 3446799999999999 99999999988 78988753
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.18 Score=61.49 Aligned_cols=101 Identities=11% Similarity=0.157 Sum_probs=74.0
Q ss_pred eEecCCC-CHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHH
Q 010640 177 VSVPANY-DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEH 255 (505)
Q Consensus 177 ~~v~~~~-~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~ 255 (505)
+++..+. +.+++.+++.+.++..++++. ...+..+.+..
T Consensus 672 v~~~~G~p~~e~~~~~l~~~gi~~i~~v~----------------------------------------~~~~a~~~v~~ 711 (2060)
T 2uva_G 672 LTIGAGVPSIEVANEYIQTLGIRHISFKP----------------------------------------GSVDAIQQVIN 711 (2060)
T ss_dssp EEEESSCCCHHHHHHHHHHSCCSEEEECC----------------------------------------CSHHHHHHHHH
T ss_pred EeecCCCCCHHHHHHHHHHcCCeEEEecC----------------------------------------CHHHHHHHHHH
Confidence 3334444 456789999999988777652 12234555567
Q ss_pred HHHcCccEEE---EeC--CCCC-c-----hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHH-----------HcCCC
Q 010640 256 LVKAGVNVVV---LDS--SQGN-S-----SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLI-----------EAGVD 312 (505)
Q Consensus 256 lieaGad~I~---i~~--~~g~-~-----~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~-----------~aGad 312 (505)
+.++|+|+++ +.. +.|| + ...+..+..+++.+ ++||++ |++.+.+++..++ .+|||
T Consensus 712 l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~-~ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAd 790 (2060)
T 2uva_G 712 IAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCS-NIVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFD 790 (2060)
T ss_dssp HHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTST-TEEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCS
T ss_pred HHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCC
Confidence 7899999988 543 2233 2 45678889998887 788876 8999999999999 99999
Q ss_pred EEEEcc
Q 010640 313 GLRVGM 318 (505)
Q Consensus 313 ~I~v~~ 318 (505)
++.+|.
T Consensus 791 gV~~GT 796 (2060)
T 2uva_G 791 GCMFGS 796 (2060)
T ss_dssp CEEESG
T ss_pred EEEEch
Confidence 999873
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.82 Score=46.30 Aligned_cols=118 Identities=9% Similarity=0.043 Sum_probs=81.7
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEcc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGM 318 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~ 318 (505)
.++..+.+..+.++|.+.+-+....+.....++.++.+|+.+ ++.++.+. .--+.+++ +.+.+.|++.|.-..
T Consensus 163 ~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE~P~ 242 (393)
T 2og9_A 163 IDQLMVNASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIEEPL 242 (393)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEECCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEECCC
Confidence 344667777888899999998776544456788889999886 57888773 12255555 444556888774211
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. ......+. +..+..++||++++.+.+..++.+++..| +|+|++-
T Consensus 243 -----------~---~~~~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 243 -----------D---AYDHEGHA---ALALQFDTPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp -----------C---TTCHHHHH---HHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred -----------C---cccHHHHH---HHHHhCCCCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 0 01233333 33345679999999999999999999988 8888874
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.65 Score=44.49 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=64.0
Q ss_pred HHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEE
Q 010640 277 IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVI 355 (505)
Q Consensus 277 ~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvI 355 (505)
+..++.+++. +-++..-++-+.-.|+.+.++|+|+|-++-..+....+..-. ..++.-..+..++..++.. +.||+
T Consensus 18 ~~~lr~~~~~--g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt-~~vtldem~~h~~aV~r~~~~~~vv 94 (275)
T 3vav_A 18 VPKLQAMREA--GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTT-LPVTLDDIAYHTACVARAQPRALIV 94 (275)
T ss_dssp HHHHHHHHHH--TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSS-TTCCHHHHHHHHHHHHHTCCSSEEE
T ss_pred HHHHHHHHHC--CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCC-CccCHHHHHHHHHHHHhcCCCCCEE
Confidence 4445555555 456656688999999999999999997753222222221111 1123333444456666665 38999
Q ss_pred ec---CCCCCHHHHH----HHHHhCCCEEEec
Q 010640 356 AD---GGISNSGHIV----KALVLGASTVMMG 380 (505)
Q Consensus 356 a~---GGI~~~~di~----kal~lGA~~V~~G 380 (505)
+| ||-.++.+++ +.+..||++|.+=
T Consensus 95 aD~pfgsY~s~~~a~~~a~rl~kaGa~aVklE 126 (275)
T 3vav_A 95 ADLPFGTYGTPADAFASAVKLMRAGAQMVKFE 126 (275)
T ss_dssp EECCTTSCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EecCCCCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 99 4567888864 5677899999763
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.21 Score=50.25 Aligned_cols=68 Identities=10% Similarity=0.164 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----chhHHHHHHHHHHhCC-CceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----SSFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----~~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|+|.+....|. ....++.+..+++..+ ++||++ |++.+.+++.+++.+|||++.++
T Consensus 240 ~e~a~~a~~~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 240 PEDADMAIKRGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG 313 (368)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 46678889999999999543221 1345677888877654 588877 89999999999999999999775
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=93.16 E-value=1.1 Score=45.19 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=80.7
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHH----HHcCCCEEEEc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNL----IEAGVDGLRVG 317 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l----~~aGad~I~v~ 317 (505)
.++...+.++.+.++|.+.+-++..+ ......+.++.+|+.+ ++.++.+. .--+.+++..+ .+.|+ .|.-
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE~- 221 (379)
T 2rdx_A 145 SEAETRAELARHRAAGYRQFQIKVGA-DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILEQ- 221 (379)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEEC-
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEeC-
Confidence 45557777888889999999987654 2345678888899888 47888773 12366665443 33566 5521
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
. .+....+ ++..+..++||++++.+.+..++.+++..| +|+|++...
T Consensus 222 ----------P-----~~~~~~~---~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~ 269 (379)
T 2rdx_A 222 ----------P-----CRSYEEC---QQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKIS 269 (379)
T ss_dssp ----------C-----SSSHHHH---HHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETT
T ss_pred ----------C-----cCCHHHH---HHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecc
Confidence 0 1123333 344455689999999999999999999987 899988543
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.32 Score=48.14 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----------------------chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHH
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----------------------SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNL 306 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----------------------~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l 306 (505)
.+.+..+.++|+|+|.+....|. ....++.+..+++..+++||++ |++.+.+++.++
T Consensus 195 ~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~ka 274 (332)
T 1vcf_A 195 REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKA 274 (332)
T ss_dssp HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 45577888999999998543221 1234667777888765688877 899999999999
Q ss_pred HHcCCCEEEEc
Q 010640 307 IEAGVDGLRVG 317 (505)
Q Consensus 307 ~~aGad~I~v~ 317 (505)
+.+|||++.++
T Consensus 275 l~~GAd~V~ig 285 (332)
T 1vcf_A 275 LALGADLLAVA 285 (332)
T ss_dssp HHHTCSEEEEC
T ss_pred HHhCCChHhhh
Confidence 99999999775
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.35 Score=48.04 Aligned_cols=69 Identities=13% Similarity=0.246 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC--C-----CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ--G-----NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~--g-----~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
+..+.++.+.+.|+|++.++... . .....++.++.+++.+ ++||++ |++.+.+++..+++.| +|+|.++
T Consensus 230 ~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iG 307 (338)
T 1z41_A 230 DHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIG 307 (338)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEEeec
Confidence 45677888889999999986531 0 1112467888888887 789887 6778999999999998 9999775
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=92.99 E-value=1.2 Score=44.48 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCccHHHHHHHHHH-cCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEc-c-cCCHHHH----HHHHHcCCCEEEE
Q 010640 245 TRESDKERLEHLVK-AGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGG-N-VVTMYQA----QNLIEAGVDGLRV 316 (505)
Q Consensus 245 ~~~~~~e~~~~lie-aGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g-~-V~t~e~a----~~l~~aGad~I~v 316 (505)
.++...+.+..+.+ +|.+.+-+...++.....++.++.+|+.++ +.++.+. + --+.+++ +.+.+.|++.|.-
T Consensus 142 ~~e~~~~~a~~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq 221 (370)
T 1nu5_A 142 DTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVEQ 221 (370)
T ss_dssp CHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEEC
T ss_pred CHHHHHHHHHHHHHhCCccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEeC
Confidence 34456667777888 999999988765544556788888888763 6777773 1 1255544 5566788888742
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. +. ......+..+ .+..++||++++.+.+..++.+++..| +|.|++-
T Consensus 222 P-----------~~---~~~~~~~~~l---~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (370)
T 1nu5_A 222 P-----------VP---RANFGALRRL---TEQNGVAILADESLSSLSSAFELARDHAVDAFSLK 269 (370)
T ss_dssp C-----------SC---TTCHHHHHHH---HHHCSSEEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred C-----------CC---cccHHHHHHH---HHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEc
Confidence 1 10 1123333333 344679999999999999999999988 8888885
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.41 Score=47.74 Aligned_cols=69 Identities=25% Similarity=0.285 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCC-C-C------CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSS-Q-G------NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~-~-g------~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
+..+.++.+.+.|+|++.+... . . .....++.++.+++.+ ++||++ |.+.+.+++..+++.| +|+|.++
T Consensus 240 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iG 318 (349)
T 3hgj_A 240 DTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRV-GLRTGAVGLITTPEQAETLLQAGSADLVLLG 318 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCCHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHc-CceEEEECCCCCHHHHHHHHHCCCceEEEec
Confidence 4566788888899999998741 1 1 1123567788888876 789877 6678999999999999 9999775
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=92.90 E-value=1 Score=42.73 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCccEEEEeCCC---C----CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQ---G----NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~---g----~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.++++.+.+.+.+++.+.+.. | ......+.++.+++.. ++||++ |++.+.+.+..+.++|+|++.|+
T Consensus 156 ~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 156 EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 355555555555555443221 2 1234667888888876 788877 57778999999999999999886
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.47 Score=47.72 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC---------------------------chhHHHHHHHHHHhCCCceEEE-cccCCHH
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN---------------------------SSFQIEMIKYAKKTYPELDVIG-GNVVTMY 301 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~---------------------------~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e 301 (505)
.+.++.+.++|+|+|.+....|. .......+.++++..+++||++ |++.+..
T Consensus 201 ~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~ 280 (368)
T 3vkj_A 201 METAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGL 280 (368)
T ss_dssp HHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEEEESSCCSHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHH
Confidence 46788899999999998654441 0112234566777766689887 8999999
Q ss_pred HHHHHHHcCCCEEEEc
Q 010640 302 QAQNLIEAGVDGLRVG 317 (505)
Q Consensus 302 ~a~~l~~aGad~I~v~ 317 (505)
++.+++.+|||++.++
T Consensus 281 d~~kal~lGA~~v~ig 296 (368)
T 3vkj_A 281 DAAKAIALGADIAGMA 296 (368)
T ss_dssp HHHHHHHHTCSEEEEC
T ss_pred HHHHHHHcCCCEEEEc
Confidence 9999999999999775
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.48 Score=46.30 Aligned_cols=69 Identities=20% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCC----------------------CCc-----hhHHHHHHHHHHhCC-CceEEE-cccCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ----------------------GNS-----SFQIEMIKYAKKTYP-ELDVIG-GNVVT 299 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~----------------------g~~-----~~~~~~i~~l~~~~~-~~~Vi~-g~V~t 299 (505)
..+.++.+.++|+|.+.++... |.+ ...++.++.+++..+ ++||++ |++.+
T Consensus 174 ~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~ 253 (311)
T 1jub_A 174 FDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIET 253 (311)
T ss_dssp HHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCS
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 3445778888899999875431 100 123678888888764 789876 89999
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 010640 300 MYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~ 317 (505)
.+++.+++.+|||++.++
T Consensus 254 ~~da~~~l~~GAd~V~vg 271 (311)
T 1jub_A 254 GQDAFEHLLCGATMLQIG 271 (311)
T ss_dssp HHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999875
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=92.75 E-value=0.96 Score=45.45 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC-----------------------------CCchhHHHHHHHHHHhCCCceEEEcccC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ-----------------------------GNSSFQIEMIKYAKKTYPELDVIGGNVV 298 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~-----------------------------g~~~~~~~~i~~l~~~~~~~~Vi~g~V~ 298 (505)
...+.++.+.++|+|++-++... +.+......++..++.. +++++. ++.
T Consensus 45 ~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~-Gi~~~s-tpf 122 (385)
T 1vli_A 45 QAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREK-QVIFLS-TVC 122 (385)
T ss_dssp HHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHT-TCEEEC-BCC
T ss_pred HHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHc-CCcEEE-ccC
Confidence 35666777888999999875310 12233445555555554 667654 899
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
+.+.+..+.+.|+|++.++. ++..+ +..|.. +.+.+.|||.+=|..|-.++..|..
T Consensus 123 D~~svd~l~~~~vd~~KIgS--------~~~~N-----~pLL~~----va~~gKPViLStGmaTl~Ei~~Ave 178 (385)
T 1vli_A 123 DEGSADLLQSTSPSAFKIAS--------YEINH-----LPLLKY----VARLNRPMIFSTAGAEISDVHEAWR 178 (385)
T ss_dssp SHHHHHHHHTTCCSCEEECG--------GGTTC-----HHHHHH----HHTTCSCEEEECTTCCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCEEEECc--------ccccC-----HHHHHH----HHhcCCeEEEECCCCCHHHHHHHHH
Confidence 99999999999999999963 22222 222322 2346899999999999999988873
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.29 Score=49.72 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----chhHHHHHHHHHHhCC-CceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----SSFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----~~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|+|.+....|. ....++.+..+++... ++||++ |++.+.+++.+++.+|||++.++
T Consensus 263 ~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 263 GDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp HHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCCCHHHHHHHHHhCCCeeEEC
Confidence 46688899999999999543321 1345677777777653 589887 89999999999999999999775
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.71 E-value=1.7 Score=43.87 Aligned_cols=116 Identities=9% Similarity=0.016 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc-c-cCCHHHH----HHHHH--cCCCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG-N-VVTMYQA----QNLIE--AGVDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g-~-V~t~e~a----~~l~~--aGad~I~v~ 317 (505)
++..+.+..+.+.|.+.+-+...++.....++.++.+|+.+ +++++.+. + --+.+++ +.+.+ .+++.|.-.
T Consensus 147 ~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iEqP 226 (389)
T 2oz8_A 147 DAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVEDP 226 (389)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEESC
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEeCC
Confidence 44566777788899999998876544456678899999987 57888773 1 1255544 45566 566655211
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
+. ......+. +..+.. ++||++++.+ +..++.+++..| +|+|++.
T Consensus 227 -----------~~---~~~~~~~~---~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 227 -----------IL---RHDHDGLR---TLRHAVTWTQINSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp -----------BC---TTCHHHHH---HHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred -----------CC---CcCHHHHH---HHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 10 01233333 333456 7999999999 999999999988 8999995
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.45 Score=46.32 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=51.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCC---------C----------CCc-h----hHHHHHHHHHHhCCCceEEE-cccCCHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSS---------Q----------GNS-S----FQIEMIKYAKKTYPELDVIG-GNVVTMYQ 302 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~---------~----------g~~-~----~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~ 302 (505)
+..+.++.+.++|+|.+.+... . +.+ . ..++.++.+++.+ ++||++ |++.+.++
T Consensus 177 ~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~~d 255 (311)
T 1ep3_A 177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQD 255 (311)
T ss_dssp CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-CCCEEEECCcCCHHH
Confidence 3457788899999999988320 0 011 0 1257788888876 789887 78889999
Q ss_pred HHHHHHcCCCEEEEc
Q 010640 303 AQNLIEAGVDGLRVG 317 (505)
Q Consensus 303 a~~l~~aGad~I~v~ 317 (505)
+.+++++|||++.++
T Consensus 256 ~~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 256 VLEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHHTCSEEEEC
T ss_pred HHHHHHcCCCEEEEC
Confidence 999999999999876
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.31 Score=48.26 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=115.2
Q ss_pred eeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEc-CCCCHHHHHHHHHhhhccCCccccCCCeeEeCC-CCCHH
Q 010640 47 TRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH-SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAP-DGCIN 124 (505)
Q Consensus 47 ~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~-~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~-~~tv~ 124 (505)
|+|+..+.++.|+|++||.+++..+++.++++.|++|++. ...+++...+.++++++..+ .|..+.+-- +....
T Consensus 3 t~~~~~l~~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~----~p~gvnl~~~~~~~~ 78 (332)
T 2z6i_A 3 TRITELLKIDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTD----KPFGVNIMLLSPFVE 78 (332)
T ss_dssp CHHHHHHTCSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCC----SCEEEEECTTSTTHH
T ss_pred ChhhHHhCCCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcC----CCEEEEecCCCCCHH
Confidence 5677778899999999999999999999999999999884 45577776666766655332 341122221 22344
Q ss_pred HHHHHhcC-Ce-EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEE
Q 010640 125 DANDFDGS-NY-VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVL 202 (505)
Q Consensus 125 ~a~~~~~~-~~-~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpV 202 (505)
+.++...+ +. +..+. .+.+ .+.++.+++.+
T Consensus 79 ~~~~~a~~~g~d~V~~~-----------------------------------------~g~p-~~~i~~l~~~g------ 110 (332)
T 2z6i_A 79 DIVDLVIEEGVKVVTTG-----------------------------------------AGNP-SKYMERFHEAG------ 110 (332)
T ss_dssp HHHHHHHHTTCSEEEEC-----------------------------------------SSCG-GGTHHHHHHTT------
T ss_pred HHHHHHHHCCCCEEEEC-----------------------------------------CCCh-HHHHHHHHHcC------
Confidence 44444433 33 21111 0000 11222233322
Q ss_pred eeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCC--CCC--chhHHH
Q 010640 203 EKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSS--QGN--SSFQIE 278 (505)
Q Consensus 203 vd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~--~g~--~~~~~~ 278 (505)
+.+...+. ..+.++.+.+.|+|++.++.. .|+ ....++
T Consensus 111 ----------------------------------~~v~~~v~----~~~~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ 152 (332)
T 2z6i_A 111 ----------------------------------IIVIPVVP----SVALAKRMEKIGADAVIAEGMEAGGHIGKLTTMT 152 (332)
T ss_dssp ----------------------------------CEEEEEES----SHHHHHHHHHTTCSCEEEECTTSSEECCSSCHHH
T ss_pred ----------------------------------CeEEEEeC----CHHHHHHHHHcCCCEEEEECCCCCCCCCCccHHH
Confidence 12222332 235567788899999999753 222 134568
Q ss_pred HHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 279 MIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 279 ~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.++.+++.. ++||++ |++.+.+.+..++.+|+|++.++
T Consensus 153 ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vG 191 (332)
T 2z6i_A 153 LVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVG 191 (332)
T ss_dssp HHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEec
Confidence 888888876 788876 88889999999999999999886
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.67 Score=44.44 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
...+......|..++-++.+. .....+.++.+++... ++|+++ |++.+.++++.+.++|||.|.++
T Consensus 189 ~aYa~~gad~G~~lV~LD~~~--~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVG 256 (286)
T 3vk5_A 189 DRYLHVARAFGFHMVYLYSRN--EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFA 256 (286)
T ss_dssp HHHHHHHHHTTCSEEEEECSS--SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEcCCC--CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 345555566788999888654 3345688888888864 688877 58899999999999999999886
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=92.49 E-value=0.73 Score=42.01 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH---hCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK---TYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~---~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
+..+.++.+.+.|++++.+...........+.++.+++ .+ ++++++. +....+.++|+|++.++..
T Consensus 27 ~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~-~v~v~v~-----~~~~~a~~~gad~v~l~~~----- 95 (215)
T 1xi3_A 27 PEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREY-DALFFVD-----DRVDVALAVDADGVQLGPE----- 95 (215)
T ss_dssp CHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHT-TCEEEEE-----SCHHHHHHHTCSEEEECTT-----
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHc-CCeEEEc-----ChHHHHHHcCCCEEEECCc-----
Confidence 46688889999999999886543333334555555544 33 6777763 3446677899999965311
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
..+ .. ++++.. .++ +..-.+.+..++.++...|+|.+.+++.|
T Consensus 96 --------~~~-~~---~~~~~~--~~~--~~~v~~~t~~e~~~~~~~g~d~i~~~~~~ 138 (215)
T 1xi3_A 96 --------DMP-IE---VAKEIA--PNL--IIGASVYSLEEALEAEKKGADYLGAGSVF 138 (215)
T ss_dssp --------SCC-HH---HHHHHC--TTS--EEEEEESSHHHHHHHHHHTCSEEEEECSS
T ss_pred --------cCC-HH---HHHHhC--CCC--EEEEecCCHHHHHHHHhcCCCEEEEcCCc
Confidence 011 11 222221 122 32123689999999999999999998765
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.41 Score=46.85 Aligned_cols=69 Identities=23% Similarity=0.167 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcC-ccEEEEeCCC----------------------CCc-----hhHHHHHHHHHHhCCCceEEE-cccCC
Q 010640 249 DKERLEHLVKAG-VNVVVLDSSQ----------------------GNS-----SFQIEMIKYAKKTYPELDVIG-GNVVT 299 (505)
Q Consensus 249 ~~e~~~~lieaG-ad~I~i~~~~----------------------g~~-----~~~~~~i~~l~~~~~~~~Vi~-g~V~t 299 (505)
..+.++.+.++| +|.+.++... |.+ ...++.++.+++..+++||++ |+|.+
T Consensus 176 ~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~ 255 (314)
T 2e6f_A 176 FDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYS 255 (314)
T ss_dssp HHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCS
T ss_pred HHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 445577888999 9999875422 111 123678888888876799876 89999
Q ss_pred HHHHHHHHHcCCCEEEEc
Q 010640 300 MYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~ 317 (505)
.+++.+++.+|||++.++
T Consensus 256 ~~da~~~l~~GAd~V~ig 273 (314)
T 2e6f_A 256 GEDAFLHILAGASMVQVG 273 (314)
T ss_dssp HHHHHHHHHHTCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999775
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.35 Score=48.20 Aligned_cols=68 Identities=22% Similarity=0.269 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----chhHHHHHHHHHHhC-CCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----SSFQIEMIKYAKKTY-PELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----~~~~~~~i~~l~~~~-~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|.|.++...|. ....++.+..+++.. .++||++ |++.+.+++.+++.+|||++.++
T Consensus 228 ~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 228 KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 46688899999999999653331 124567777776654 3688877 89999999999999999999875
|
| >1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.45 E-value=2.1 Score=39.66 Aligned_cols=123 Identities=18% Similarity=0.153 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+...+.++.+.+....++ |-.+. ...-+..++.+.+. ++++-+.-+.|...+..+.++|++++. +..+
T Consensus 73 e~~i~eA~~l~~~~~nv~-IKIP~--T~eGl~A~~~L~~~--GI~vN~TliFS~~Qa~~aa~AGa~~iS-------pFVg 140 (223)
T 1wx0_A 73 EAMVAEGRRLAAIHPNIV-VKLPT--TEEGLKACKRLSAE--GIKVNMTLIFSANQALLAARAGASYVS-------PFLG 140 (223)
T ss_dssp HHHHHHHHHHHHHCTTEE-EEEES--SHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHTTCSEEE-------EBHH
T ss_pred HHHHHHHHHHHhhCCCEE-EEeCC--CHHHHHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHCCCeEEE-------eccc
Confidence 345566666766654433 32221 12335666667666 788877778899999999999999773 2333
Q ss_pred ccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
| ...||.+....+.++.++.+.++ ..+++ -+++++.++..+..+|+|.+-+....
T Consensus 141 R-idd~g~~G~~~v~~i~~~~~~~~~~t~vl~-AS~r~~~~v~~~~l~G~d~~Tip~~~ 197 (223)
T 1wx0_A 141 R-VDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAALLGADIATMPHAV 197 (223)
T ss_dssp H-HHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred h-HhhcCCCHHHHHHHHHHHHHHcCCCeEEee-cccCCHHHHHHHHHhCCCEEECCHHH
Confidence 3 45577788888888888877665 34555 48999999999999999998776544
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=92.44 E-value=2.4 Score=43.14 Aligned_cols=120 Identities=11% Similarity=0.005 Sum_probs=82.9
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCC------chhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGN------SSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVD 312 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~------~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad 312 (505)
++...+.++.+.+.|.+.+-+...++. ....++.++.+|+.+ ++.++++- .--+.++| +.+.+.|++
T Consensus 180 ~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~ 259 (412)
T 3stp_A 180 IEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPR 259 (412)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 345667777888899999999875541 145678888889887 57888883 12355555 445567888
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
.|.-.. . ...+..+. +..+..++||++++.+.+..++.+++..| +|.|++-..
T Consensus 260 ~iEeP~-----------~---~~d~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~li~~~a~D~v~ik~~ 313 (412)
T 3stp_A 260 WLEEPV-----------I---ADDVAGYA---ELNAMNIVPISGGEHEFSVIGCAELINRKAVSVLQYDTN 313 (412)
T ss_dssp EEECCS-----------C---TTCHHHHH---HHHHTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHH
T ss_pred EEECCC-----------C---cccHHHHH---HHHhCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecChh
Confidence 884321 0 01233333 33445689999999999999999999987 788887543
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=92.40 E-value=0.65 Score=46.97 Aligned_cols=117 Identities=9% Similarity=0.026 Sum_probs=80.9
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEcc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGM 318 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~ 318 (505)
.++..+.++.+.++|.+.+-++........ .+.++.+|+.+ ++.++.+. .--+.+++ +.+.+.|++.|.-.
T Consensus 165 ~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP- 242 (388)
T 2nql_A 165 LKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAEAP- 242 (388)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEECC-
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEECC-
Confidence 445667777888899999998765433456 88899999877 57888773 11255554 44555788877321
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. .......+ ++..+..++||++++.+.+..++.+++..| +|+|++-
T Consensus 243 ----------~---~~~d~~~~---~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 289 (388)
T 2nql_A 243 ----------V---WTEDIAGL---EKVSKNTDVPIAVGEEWRTHWDMRARIERCRIAIVQPE 289 (388)
T ss_dssp ----------S---CTTCHHHH---HHHHTSCCSCEEECTTCCSHHHHHHHHTTSCCSEECCC
T ss_pred ----------C---ChhhHHHH---HHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence 1 01123333 344445689999999999999999999887 8888874
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.30 E-value=3.1 Score=41.79 Aligned_cols=121 Identities=12% Similarity=0.136 Sum_probs=82.6
Q ss_pred CCccHHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCC-CceEEEc--ccCCHHHH----HHHHHcCCCEEEE
Q 010640 245 TRESDKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDVIGG--NVVTMYQA----QNLIEAGVDGLRV 316 (505)
Q Consensus 245 ~~~~~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v 316 (505)
.++...+.++.+++. |...+-+..........++.++.+|+.++ +.++++- .--+.++| +.+.+.|++.|.-
T Consensus 148 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEq 227 (383)
T 3i4k_A 148 PLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFEQ 227 (383)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEES
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC
Confidence 344456666777777 99998887654345667888999999884 6788773 11255554 5566789888842
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
. +. ......+..+ .+..++||.+++.+.+..|+.+++..| +|.|++-..
T Consensus 228 P-----------~~---~~d~~~~~~l---~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~ 277 (383)
T 3i4k_A 228 P-----------TP---ADDLETLREI---TRRTNVSVMADESVWTPAEALAVVKAQAADVIALKTT 277 (383)
T ss_dssp C-----------SC---TTCHHHHHHH---HHHHCCEEEESTTCSSHHHHHHHHHHTCCSEEEECTT
T ss_pred C-----------CC---hhhHHHHHHH---HhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEEccc
Confidence 1 10 0123333333 334579999999999999999999988 788888643
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.92 Score=43.96 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCccEEEEeC--------CCCC-chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccC
Q 010640 250 KERLEHLVKAGVNVVVLDS--------SQGN-SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMG 319 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~--------~~g~-~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g 319 (505)
.+.++.+.++|++.+.+.. ..|. .....+.++.+++.+ ++|++++ ...+.+.++.+.++|+|++.....
T Consensus 31 ~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~-~~Pvi~~~~~~~~~~~~~~~~aGad~v~~~~~ 109 (297)
T 2zbt_A 31 PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAV-SIPVMAKVRIGHFVEAMILEAIGVDFIDESEV 109 (297)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTC-SSCEEEEEETTCHHHHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhc-CCCeEEEeccCCHHHHHHHHHCCCCEEeeeCC
Confidence 5788889999999997621 0110 112356777888776 7888763 456789999999999999932110
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAA--QSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~--~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
... +. +.+.++ ..++++++ ++.++.+..++..+||+.|.+
T Consensus 110 ---~~~---------~~------~~~~~~~~~~~i~l~~--~v~~~~~~~~a~~~Gad~I~v 151 (297)
T 2zbt_A 110 ---LTP---------AD------EEHHIDKWKFKVPFVC--GARNLGEALRRIAEGAAMIRT 151 (297)
T ss_dssp ---SCC---------SC------SSCCCCGGGCSSCEEE--EESSHHHHHHHHHTTCSEEEE
T ss_pred ---CCh---------HH------HHHHHHHhCCCceEEe--ecCCHHHHHHHHHcCCCEEEE
Confidence 000 00 001111 12678887 589999999999999999844
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=2.6 Score=42.65 Aligned_cols=118 Identities=11% Similarity=0.038 Sum_probs=81.7
Q ss_pred ccHHHHH-HHHHHcCccEEEEeCCCC------CchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCC
Q 010640 247 ESDKERL-EHLVKAGVNVVVLDSSQG------NSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVD 312 (505)
Q Consensus 247 ~~~~e~~-~~lieaGad~I~i~~~~g------~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad 312 (505)
++..+.+ +.+.+.|...+-+..... .....++.++.+|+.+ ++.++++- .--+.++| +.+.+.|++
T Consensus 141 e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~ 220 (393)
T 4dwd_A 141 DEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYS 220 (393)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 4455666 777888999988866432 3456788888999987 57888773 12255554 556678888
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
.|.-.. . ......+. +..+..++||.+++.+.+..|+.+++..|+|.|++--
T Consensus 221 ~iEqP~-----------~---~~d~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~d~v~~k~ 272 (393)
T 4dwd_A 221 WFEEPV-----------Q---HYHVGAMG---EVAQRLDITVSAGEQTYTLQALKDLILSGVRMVQPDI 272 (393)
T ss_dssp EEECCS-----------C---TTCHHHHH---HHHHHCSSEEEBCTTCCSHHHHHHHHHHTCCEECCCT
T ss_pred EEECCC-----------C---cccHHHHH---HHHhhCCCCEEecCCcCCHHHHHHHHHcCCCEEEeCc
Confidence 884211 0 01233333 3344568999999999999999999999999998753
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=92.14 E-value=0.43 Score=48.06 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----chhHHHHHHHHHHhCC-CceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----SSFQIEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----~~~~~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|.|.+....|. ....++.+..+++..+ ++||++ |+|.+.+++.+++.+|+|++.++
T Consensus 236 ~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 236 AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEEeec
Confidence 46778889999999999432221 1246777888888764 688877 89999999999999999999775
|
| >1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=91.99 E-value=2.1 Score=39.82 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=85.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+...+.++.+.+....+ .|-.+. ...-+..++.+.+. ++++-+.-+.|...|..+.++|++++. +..+
T Consensus 76 e~mi~eA~~L~~~~~nv-~IKIP~--T~eGl~Ai~~L~~e--GI~vNvTliFS~~QA~laa~AGa~~iS-------pFVg 143 (230)
T 1vpx_A 76 EGMVREARELAQISEYV-VIKIPM--TPDGIKAVKTLSAE--GIKTNVTLVFSPAQAILAAKAGATYVS-------PFVG 143 (230)
T ss_dssp HHHHHHHHHHHTTCTTE-EEEEES--SHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHHTCSEEE-------EBHH
T ss_pred HHHHHHHHHHHHhCCCE-EEEeCC--CHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHhCCCeEEE-------eccc
Confidence 34556666776665443 332221 12335666777666 788877778899999999999999773 2333
Q ss_pred ccccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
| ...||.+....+.++.++.+.++ ..++++ +++++.++..+..+||+.+-+....
T Consensus 144 R-idd~g~dG~~~v~~i~~~~~~~~~~t~iL~A-S~r~~~~v~~~~l~G~d~~Tip~~~ 200 (230)
T 1vpx_A 144 R-MDDLSNDGMRMLGEIVEIYNNYGFETEIIAA-SIRHPMHVVEAALMGVDIVTMPFAV 200 (230)
T ss_dssp H-HHHTTSCHHHHHHHHHHHHHHHTCSCEEEEB-SCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred h-hhhccccHHHHHHHHHHHHHHcCCCeEEEee-ccCCHHHHHHHHHhCCCEEECCHHH
Confidence 3 45577777888888887776554 446664 6999999999999999987766443
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=91.97 E-value=0.36 Score=44.97 Aligned_cols=67 Identities=21% Similarity=0.333 Sum_probs=47.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEE-cccCCHHHHHHHHHcCCCEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIG-GNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~-g~V~t~e~a~~l~~aGad~I 314 (505)
+..+.++.+.++|+|++...+........++.++.+++.. .++||++ |++.|.+++.+++++|+|.|
T Consensus 133 ~~~~~a~~a~eaGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~i 201 (225)
T 1mzh_A 133 EIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence 3556678888899999954331111112456677777654 2688866 89999999999999999976
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.73 Score=42.50 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=47.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCC------chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGN------SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~------~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+.+..+.+.|+|++.+...++. ....++.++.+++.. ++|+++ |++ +.+.+..+.++|++++.++
T Consensus 121 ~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~Ga~gv~vg 192 (221)
T 1yad_A 121 EEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAGADGIAVM 192 (221)
T ss_dssp HHHHHHHHTTCSEEEEECCC----------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTTCSEEEES
T ss_pred HHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEEh
Confidence 4456677889999988653211 122467788887776 788866 777 8999999999999999886
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=91.88 E-value=0.98 Score=43.22 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCCC----chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQGN----SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g~----~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-+-+ ..|. .....+.++.+|+.. +.|+++| ++.++++++....+|+|+++||
T Consensus 160 ~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~-~~pv~vGfGI~~~e~~~~~~~~gADgvVVG 235 (267)
T 3vnd_A 160 DADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN-APPPLLGFGIAEPEQVRAAIKAGAAGAISG 235 (267)
T ss_dssp CHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 34677777776655554422 2232 234678888888876 7899885 6778999998999999999986
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=91.81 E-value=2 Score=40.00 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCC-----------HHHHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVT-----------MYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t-----------~e~a~~l~~aGad~I~v 316 (505)
....++.+.+.|+|.+.+|...|. ..+...++.+++. +..|.+ ....+ ..-++.+.++|++++++
T Consensus 80 v~~~~~~~~~~gad~vtvh~~~G~-~~l~~~~~~~~~~--g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~ 156 (228)
T 3m47_A 80 NEKICRATFKAGADAIIVHGFPGA-DSVRACLNVAEEM--GREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVG 156 (228)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTCH-HHHHHHHHHHHHH--TCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHhCCCCEEEEeccCCH-HHHHHHHHHHHhc--CCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 445778888999999999887663 2233445545444 222322 21111 12456677899998865
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH-HHHHHHHHhCCCEEEecccccC
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS-GHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~-~di~kal~lGA~~V~~G~~f~~ 385 (505)
+. ..+..+..+++.+.. +.++ .++||+-. .+. .++.+||+.+.+|+.+..
T Consensus 157 ~a----------------t~~~e~~~ir~~~~~-~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~ 207 (228)
T 3m47_A 157 PS----------------TRPERLSRLREIIGQ-DSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYL 207 (228)
T ss_dssp CS----------------SCHHHHHHHHHHHCS-SSEE-EECC----------CGGGTCSEEEECHHHHT
T ss_pred CC----------------CChHHHHHHHHhcCC-CCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhC
Confidence 41 012233444444321 2444 66787643 367 899999999999998753
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=91.79 E-value=0.53 Score=43.80 Aligned_cols=122 Identities=13% Similarity=0.081 Sum_probs=73.6
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc----hhHHHHHHHHHHhCCCceEEEcc-cC-CHHHHHHHHHcCCCEEEEccCC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS----SFQIEMIKYAKKTYPELDVIGGN-VV-TMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~----~~~~~~i~~l~~~~~~~~Vi~g~-V~-t~e~a~~l~~aGad~I~v~~g~ 320 (505)
....+.++.+.+.|+|++.++...|+. ....+.++.+++.+ +.++.+.- +. ..+....+.++|+|++.+-.+.
T Consensus 19 ~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~-~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~ 97 (228)
T 1h1y_A 19 ANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHT-KAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEV 97 (228)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTC-CSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCC
Confidence 346678888889999999887543331 12247788888765 33333211 11 2334777788999999663110
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHh---CCCEEEeccccc
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVL---GASTVMMGSFLA 384 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~l---GA~~V~~G~~f~ 384 (505)
. +. .+..+.+.+++.++.++.+=.-.++.+..+++.. |+|.|.+++.+-
T Consensus 98 ---------~----~~--~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~p 149 (228)
T 1h1y_A 98 ---------S----RD--NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEP 149 (228)
T ss_dssp ---------C----TT--THHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCT
T ss_pred ---------c----cc--HHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecC
Confidence 0 11 1112233344456666664444566666777766 999999988763
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=91.74 E-value=0.63 Score=46.68 Aligned_cols=216 Identities=13% Similarity=0.166 Sum_probs=118.0
Q ss_pred CcccceeecCCC-CCCCCCCeeeeeeecCcccccceEEEccchhh------hHHHHHHHHHHcCCeeEEcCCCCH--HH-
Q 010640 24 YTYDDVIFLPHY-IDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV------TEDYMAAAMAALGGIGIVHSNCTA--AD- 93 (505)
Q Consensus 24 ~~~~d~~l~p~~-~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~v------t~~~ma~al~~~Gg~g~i~~~~~~--~~- 93 (505)
-.|||+.|+|.. |.+..+++|++++|. ++++..|++.++|... .+..++.+..+.|-.-.+ ..+.+ ++
T Consensus 54 ~~fd~i~l~~~~lP~~~~~~vd~st~i~-g~~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~v-Gs~~~~le~~ 131 (365)
T 3sr7_A 54 NSFDDIELIHHSLPDYDLAEIDLSTHFA-GQDFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVT-GSYSTALKNP 131 (365)
T ss_dssp CGGGGEEECCCSSCCSCGGGCCCCEEET-TEEESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC-----------
T ss_pred CCcceEEEECCCCCcCCcccccceEEEC-CEEccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeec-ccccccccCc
Confidence 469999999986 455667899999998 7899999999999543 234566666666543222 22211 10
Q ss_pred HHHHHHhhhcc-CCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccc
Q 010640 94 QARLVVSAKSR-RVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDY 169 (505)
Q Consensus 94 ~~~~v~~v~~~-~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~i 169 (505)
....+ .+.+. .+ .+...++..+.+++++.+.+.. +- +.+-=+ ++.++
T Consensus 132 ~~~~~-~v~r~~P~----~~~ianig~~~~~e~~~~~ve~~~adal~ihln------------------------~~qe~ 182 (365)
T 3sr7_A 132 DDTSY-QVKKSRPH----LLLATNIGLDKPYQAGLQAVRDLQPLFLQVHIN------------------------LMQEL 182 (365)
T ss_dssp ------------------CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEEC------------------------HHHHH
T ss_pred cccce-EehhhCCC----CcEEEEeCCCCCHHHHHHHHHhcCCCEEEEecc------------------------ccccc
Confidence 00111 11111 11 1211346666777777776655 33 222110 12232
Q ss_pred cccCCCceEecCCCC---HHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEe-ecC
Q 010640 170 MRDCSSNVSVPANYD---LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAA-IGT 245 (505)
Q Consensus 170 m~~~~~~~~v~~~~~---l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~-i~~ 245 (505)
..+ .-+.+ ..+.++.+.+. ..+||+ +. ++
T Consensus 183 ~~p-------~Gd~~~~~~~~~I~~l~~~--~~~PVi-------------------------------------vK~vg- 215 (365)
T 3sr7_A 183 LMP-------EGEREFRSWKKHLSDYAKK--LQLPFI-------------------------------------LKEVG- 215 (365)
T ss_dssp TSS-------SSCCCCHHHHHHHHHHHHH--CCSCEE-------------------------------------EEECS-
T ss_pred cCC-------CCCCcHHHHHHHHHHHHHh--hCCCEE-------------------------------------EEECC-
Confidence 222 11111 23445555442 124443 12 11
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCc-------------------hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNS-------------------SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQN 305 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~-------------------~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~ 305 (505)
.....+.++.+.++|+|+|.++...|.. ......+..++...+++||++ |++.+..++.+
T Consensus 216 ~g~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~K 295 (365)
T 3sr7_A 216 FGMDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIK 295 (365)
T ss_dssp SCCCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHH
Confidence 1123467888999999999986543321 112234444444434688887 89999999999
Q ss_pred HHHcCCCEEEEc
Q 010640 306 LIEAGVDGLRVG 317 (505)
Q Consensus 306 l~~aGad~I~v~ 317 (505)
++.+|||++.++
T Consensus 296 aLalGAdaV~ig 307 (365)
T 3sr7_A 296 ALVLGAKAVGLS 307 (365)
T ss_dssp HHHHTCSEEEES
T ss_pred HHHcCCCEEEEC
Confidence 999999999775
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=91.70 E-value=1.6 Score=44.01 Aligned_cols=117 Identities=13% Similarity=0.095 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHH----HHHHc-CCCEEEEcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQ----NLIEA-GVDGLRVGM 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~----~l~~a-Gad~I~v~~ 318 (505)
+...+.+..+.++|.+.+-+...++.....++.++.+|+.+ ++.++++. .--+.+++. .+.+. |++.|.-.
T Consensus 141 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iEqP- 219 (382)
T 2gdq_A 141 SRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLEEP- 219 (382)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEECC-
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEECC-
Confidence 45667777788899999998876544466788899999887 57888773 123666653 34445 66655311
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
.. ......+ ++..+..++||++++.+.+..++.+++..| +|.|++-
T Consensus 220 ----------~~---~~d~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 266 (382)
T 2gdq_A 220 ----------LP---FDQPQDY---AMLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPD 266 (382)
T ss_dssp ----------SC---SSCHHHH---HHHHTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred ----------CC---cccHHHH---HHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 10 0123333 344445689999999999999999999987 7888774
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.36 Score=45.35 Aligned_cols=126 Identities=13% Similarity=0.123 Sum_probs=75.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceE--EEc----ccC---CHHHHHHHHHcCCCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV--IGG----NVV---TMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g----~V~---t~e~a~~l~~aGad~I~v~ 317 (505)
++..+.++.+.+.+...+++.. .++...+..-+.. ++.| ++| ... -..+++.+++.|||.|++-
T Consensus 43 ~~i~~lc~eA~~~~~~aVcV~p------~~v~~a~~~L~~s-~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmV 115 (239)
T 3ngj_A 43 EQIRKLCSEAAEYKFASVCVNP------TWVPLCAELLKGT-GVKVCTVIGFPLGATPSEVKAYETKVAVEQGAEEVDMV 115 (239)
T ss_dssp HHHHHHHHHHHHHTCSEEEECG------GGHHHHHHHHTTS-SCEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEECH------HHHHHHHHHhCCC-CCeEEEEeccCCCCCchHHHHHHHHHHHHcCCCEEEEE
Confidence 3455666777778999998832 2333332222111 3333 222 111 2347888999999999875
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH----HHhCCCEEEeccccc
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA----LVLGASTVMMGSFLA 384 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ka----l~lGA~~V~~G~~f~ 384 (505)
+.-|... ...|. -...-+..+.+.|...-+++|..-|..+...+.+| ..+|||+|--.|-|.
T Consensus 116 iNig~lk----~g~~~-~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf~ 181 (239)
T 3ngj_A 116 INIGMVK----AKKYD-DVEKDVKAVVDASGKALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGFG 181 (239)
T ss_dssp CCHHHHH----TTCHH-HHHHHHHHHHHHHTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS
T ss_pred eehHHhc----cccHH-HHHHHHHHHHHHhcCCceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCCC
Confidence 3211100 01111 12334455555554333788888888999999998 889999999998774
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.47 Score=42.97 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
....++.+.+..+|++++- .|. +-+.++++++.. ++|+++| -+.+.+++..+.++||++|..+.
T Consensus 116 l~~~~~~i~~~~PD~iEiL--PGi---~p~iI~~i~~~~-~~PiIaGGlI~~~edv~~al~aGA~aVsTs~ 180 (192)
T 3kts_A 116 YNKGVALIQKVQPDCIELL--PGI---IPEQVQKMTQKL-HIPVIAGGLIETSEQVNQVIASGAIAVTTSN 180 (192)
T ss_dssp HHHHHHHHHHHCCSEEEEE--CTT---CHHHHHHHHHHH-CCCEEEESSCCSHHHHHHHHTTTEEEEEECC
T ss_pred HHHHHHHHhhcCCCEEEEC--Cch---hHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCeEEEeCC
Confidence 3445566666789999873 232 236777788876 8999996 55799999999999999997763
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=1.9 Score=43.74 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=80.7
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEcc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGM 318 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~ 318 (505)
.++..+.+..+.++|.+.+-+....+......+.++.+|+.+ +++++.+. .--+.+++ +.+.+.|++.|.-..
T Consensus 176 ~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iEqP~ 255 (398)
T 2pp0_A 176 LDQVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEEPL 255 (398)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEECCS
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceeeCCC
Confidence 344566777788899999988765444456788889999886 57888773 12355555 344456777763211
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. ......+..+ .+..++||++++.+.+..++.+++..| +|.|++-
T Consensus 256 -----------~---~~d~~~~~~l---~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 256 -----------D---AYDIEGHAQL---AAALDTPIATGEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp -----------C---TTCHHHHHHH---HHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred -----------C---hhhHHHHHHH---HhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 0 0123333333 344679999999999999999999988 7888774
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=91.50 E-value=2.5 Score=42.43 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=79.7
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcc--cCCHHHHHHHHHc---CCCEEEEcc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGN--VVTMYQAQNLIEA---GVDGLRVGM 318 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~--V~t~e~a~~l~~a---Gad~I~v~~ 318 (505)
.++...+.++.+.++|.+.+-+...++......+.++.+|+.+ ++.++.+.. --+.+++..+.+. |+ .|.
T Consensus 145 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~i-~iE--- 220 (378)
T 2qdd_A 145 TPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVRARD-WIE--- 220 (378)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCCCCC-EEE---
T ss_pred CHHHHHHHHHHHHHHhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhCCCc-EEE---
Confidence 3444566777788889999998776544456788899999987 478887731 2366776554432 33 321
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
.. .+....+ ++..+..++||++++-+.+..++.+++..| +|+|++-.
T Consensus 221 --------qP-----~~d~~~~---~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 268 (378)
T 2qdd_A 221 --------QP-----CQTLDQC---AHVARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKP 268 (378)
T ss_dssp --------CC-----SSSHHHH---HHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred --------cC-----CCCHHHH---HHHHHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecc
Confidence 11 1223333 344445689999999999999999999877 89998853
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=91.47 E-value=1.3 Score=44.82 Aligned_cols=118 Identities=8% Similarity=0.031 Sum_probs=80.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEcc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGM 318 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~ 318 (505)
+++..+.+..+.++|.+.+-+..........++.++.+|+.+ ++.++.+. .--+.+++ +.+.+.|++.|.-..
T Consensus 150 ~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP~ 229 (391)
T 2qgy_A 150 TNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIEEPV 229 (391)
T ss_dssp HHHHHHHHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEECSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEeCCC
Confidence 344667777788899999988653221255678888998876 57888773 12355554 445557888774211
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. ......+..+ .+..++||++++.+.+..++.+++..| +|+|++-
T Consensus 230 -----------~---~~d~~~~~~l---~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 230 -----------D---GENISLLTEI---KNTFNMKVVTGEKQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp -----------C---TTCHHHHHHH---HHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred -----------C---hhhHHHHHHH---HhhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 0 0123333333 344679999999999999999999988 7888874
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=91.46 E-value=2.7 Score=41.89 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc-c-cCCHHHH----HHHHH--cCCCEEE
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG-N-VVTMYQA----QNLIE--AGVDGLR 315 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g-~-V~t~e~a----~~l~~--aGad~I~ 315 (505)
.+++..+.+..+.+.|.+.+-+...++.....++.++.+|+.+ +++++.+. + --+.+++ +.+.+ .|++.|.
T Consensus 140 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iE 219 (366)
T 1tkk_A 140 SPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVE 219 (366)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEE
Confidence 3445566777788889999988765534456778888899887 57888773 1 1255554 45556 6666663
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
-. +. ......+..+ .+..++||++++.+.+..++.+++..| +|.|++-.
T Consensus 220 qP-----------~~---~~d~~~~~~l---~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 269 (366)
T 1tkk_A 220 QP-----------VH---KDDLAGLKKV---TDATDTPIMADESVFTPRQAFEVLQTRSADLINIKL 269 (366)
T ss_dssp CC-----------SC---TTCHHHHHHH---HHHCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred CC-----------CC---cccHHHHHHH---HhhCCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeeh
Confidence 11 10 1123333333 344679999999999999999999877 88888853
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=91.41 E-value=2.3 Score=42.18 Aligned_cols=105 Identities=12% Similarity=0.096 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHcCcc-----EEEEeCCC----------C--------------CchhHHHHHHHHHHhCCCceEEEcccC
Q 010640 248 SDKERLEHLVKAGVN-----VVVLDSSQ----------G--------------NSSFQIEMIKYAKKTYPELDVIGGNVV 298 (505)
Q Consensus 248 ~~~e~~~~lieaGad-----~I~i~~~~----------g--------------~~~~~~~~i~~l~~~~~~~~Vi~g~V~ 298 (505)
...+.++.+.++|+| ++-++.-. + .+......++..++.. +++++. ++.
T Consensus 22 ~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~-Gi~~~s-t~f 99 (350)
T 3g8r_A 22 HGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLVAEMKAN-GFKAIC-TPF 99 (350)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHHHHHHHT-TCEEEE-EEC
T ss_pred HHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCcEEe-ccC
Confidence 356667777778988 88886310 0 1112223333333343 677765 899
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
+.+.+..+.+.|++++.++. ++..+ +..|.. +.+.+.|||.+=|..|-.++..|..
T Consensus 100 D~~svd~l~~~~v~~~KI~S--------~~~~N-----~pLL~~----va~~gKPviLstGmstl~Ei~~Ave 155 (350)
T 3g8r_A 100 DEESVDLIEAHGIEIIKIAS--------CSFTD-----WPLLER----IARSDKPVVASTAGARREDIDKVVS 155 (350)
T ss_dssp SHHHHHHHHHTTCCEEEECS--------SSTTC-----HHHHHH----HHTSCSCEEEECTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECc--------ccccC-----HHHHHH----HHhhCCcEEEECCCCCHHHHHHHHH
Confidence 99999999999999999963 22222 222322 2347899999999999999998864
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=1.9 Score=43.58 Aligned_cols=118 Identities=8% Similarity=-0.026 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEccC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGMG 319 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~g 319 (505)
++..+.++.+.+.|.+.+-+...++......+.++.+|+.+ +++++.+- .--+.+++ +.+.+.|++.|.-.
T Consensus 167 ~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEqP-- 244 (392)
T 1tzz_A 167 SMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEEV-- 244 (392)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEECC--
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeecCC--
Confidence 44566677788889999998876544456778888898876 57888773 12255555 33444677776321
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-----CCEEEecc
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-----ASTVMMGS 381 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-----A~~V~~G~ 381 (505)
+. ......+ ++..+..++||++++.+.+..++.+++..| +|+|++-.
T Consensus 245 ---------~~---~~d~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~ 296 (392)
T 1tzz_A 245 ---------GD---PLDYALQ---AALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDC 296 (392)
T ss_dssp ---------SC---TTCHHHH---HHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred ---------CC---hhhHHHH---HHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECc
Confidence 10 0122223 344455689999999999999999999998 89888753
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.62 Score=48.97 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----chhHHHHHHHHHHhC------CCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----SSFQIEMIKYAKKTY------PELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----~~~~~~~i~~l~~~~------~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.+..+.++|+|+|.+....|. ....++.+..+++.+ .++||++ |++.+.+++.+++.+|||++.++
T Consensus 354 ~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 354 TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 46678889999999999543231 123456666666654 3688877 89999999999999999999775
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=0.53 Score=47.23 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC--C------CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ--G------NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~--g------~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
+..+.++.+.+.|+|++.+.... . .....++.++.+++.+ ++||++ |.+.+.+.+..+++.| +|.|.++
T Consensus 247 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iG 325 (363)
T 3l5l_A 247 ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREA-KLPVTSAWGFGTPQLAEAALQANQLDLVSVG 325 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-TCCEEECSSTTSHHHHHHHHHTTSCSEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHCCCccEEEec
Confidence 45566788888999999986421 0 1123467788888877 788877 6778999999999999 9999664
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=91.01 E-value=4.5 Score=40.51 Aligned_cols=118 Identities=10% Similarity=0.106 Sum_probs=82.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC--CCchhHHHHHHHHHHhC-CCceEEEc--ccCC-HHHHHH----HHHcCCCEEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ--GNSSFQIEMIKYAKKTY-PELDVIGG--NVVT-MYQAQN----LIEAGVDGLRV 316 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~--g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t-~e~a~~----l~~aGad~I~v 316 (505)
++..+.++.+.+.|.+.+-+...+ +.....++.++.+|+.+ ++.++++- .--+ .++|.. +.+.|++.|.-
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~iEq 227 (374)
T 3sjn_A 148 EDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWIEE 227 (374)
T ss_dssp GGGHHHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEEEC
Confidence 567788888899999999987753 23466788889999986 57888873 1235 666544 44467777742
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
.. . ......+. +..+..++||++++.+.+..++.+++..| +|.|++-.
T Consensus 228 P~-----------~---~~~~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 276 (374)
T 3sjn_A 228 PV-----------L---ADSLISYE---KLSRQVSQKIAGGESLTTRYEFQEFITKSNADIVQPDI 276 (374)
T ss_dssp SS-----------C---TTCHHHHH---HHHHHCSSEEEECTTCCHHHHHHHHHHHHCCSEECCBT
T ss_pred CC-----------C---cccHHHHH---HHHhhCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 11 0 01233333 33445689999999999999999999876 78887654
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.51 Score=47.90 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC----------chhHHHHHHHHHHhC--CCceEEE-cccCCHHHHHHHHHcCCCEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN----------SSFQIEMIKYAKKTY--PELDVIG-GNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~----------~~~~~~~i~~l~~~~--~~~~Vi~-g~V~t~e~a~~l~~aGad~I~ 315 (505)
..+.++.+.++|+|+|.+....|+ ....++.+.++.+.. .++|||+ |++.+.+++.+++.+||+++.
T Consensus 194 t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 194 TEEATKELIENGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp SHHHHHHHHHTTCSEEEECC---------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 357788899999999998322111 123456666666542 2789988 889999999999999999998
Q ss_pred Ec
Q 010640 316 VG 317 (505)
Q Consensus 316 v~ 317 (505)
++
T Consensus 274 vG 275 (400)
T 3ffs_A 274 IG 275 (400)
T ss_dssp EC
T ss_pred EC
Confidence 86
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=90.99 E-value=1.3 Score=42.98 Aligned_cols=96 Identities=20% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccC-cChHHHHHHHHHHHhhcCCcEEecC
Q 010640 280 IKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADG 358 (505)
Q Consensus 280 i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~G 358 (505)
++.+++. +-++..-++.+.-.|+.+.++|+|+|.++..+ ........+.+ ++.-+.+..++..++..++||++|.
T Consensus 7 lr~l~~~--~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~--~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~ 82 (290)
T 2hjp_A 7 LRAALDS--GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFE--LSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADI 82 (290)
T ss_dssp HHHHHHH--CCCEEEEECSSHHHHHHHHHHTCSEEEECHHH--HHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEEC
T ss_pred HHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEEChHH--HHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3344444 34666668899999999999999999987311 11111111112 3333455566677777789999996
Q ss_pred --CCCCHHHH----HHHHHhCCCEEEe
Q 010640 359 --GISNSGHI----VKALVLGASTVMM 379 (505)
Q Consensus 359 --GI~~~~di----~kal~lGA~~V~~ 379 (505)
|-.++.++ .+.+.+||++|.+
T Consensus 83 d~Gyg~~~~~~~~v~~l~~aGa~gv~i 109 (290)
T 2hjp_A 83 DTGFGNAVNVHYVVPQYEAAGASAIVM 109 (290)
T ss_dssp TTTTSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 54465544 3456799999976
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=1.1 Score=45.15 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHHcCccEEEEeCC---------CCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSS---------QGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~---------~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+...+.++.+.++|++++-...- .|.+...+..++..++.+ ++|++. ++.+.+.+..+.+. +|++.++
T Consensus 156 e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~-Gl~~~t-e~~d~~~~~~l~~~-vd~lkIg 232 (385)
T 3nvt_A 156 EQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEY-GLGVIS-EIVTPADIEVALDY-VDVIQIG 232 (385)
T ss_dssp HHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH-TCEEEE-ECCSGGGHHHHTTT-CSEEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHc-CCEEEE-ecCCHHHHHHHHhh-CCEEEEC
Confidence 34667788888999999977541 122334455555555554 788876 88899999988888 9999886
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCC-CCHHHHHHHHH----hCCCEEE
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGI-SNSGHIVKALV----LGASTVM 378 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI-~~~~di~kal~----lGA~~V~ 378 (505)
.+ ...+ ... .+.+...+.||+.+-|. .+..++..|.. .|..-+.
T Consensus 233 s~--------~~~n-----~~L----L~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~ 281 (385)
T 3nvt_A 233 AR--------NMQN-----FEL----LKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKII 281 (385)
T ss_dssp GG--------GTTC-----HHH----HHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEE
T ss_pred cc--------cccC-----HHH----HHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 21 1111 111 23334578999999999 89999988864 4654343
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.69 E-value=1.1 Score=42.35 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCC---------CchhHHHHHHHHH---HhCCCceEEEcccCCHHHHHHHHHcCCCEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQG---------NSSFQIEMIKYAK---KTYPELDVIGGNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g---------~~~~~~~~i~~l~---~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I 314 (505)
.+..+.++.+++.|++++.+-.-.. ......+..+.++ +.+ ++++++-. ....+..+|+|+|
T Consensus 43 ~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~-~~~liInd-----~~~lA~~~gAdGV 116 (243)
T 3o63_A 43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRY-GALFAVND-----RADIARAAGADVL 116 (243)
T ss_dssp CCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHT-TCEEEEES-----CHHHHHHHTCSEE
T ss_pred chHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhh-CCEEEEeC-----HHHHHHHhCCCEE
Confidence 3477889999999999998844331 1233444444443 344 78888731 2233567899998
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
-++. .. .|. .++++... .+..|-. .+.|..++.+|...|||.|.+|..|-
T Consensus 117 HLg~--------~d-----l~~----~~~r~~~~-~~~~iG~--S~ht~~Ea~~A~~~GaDyI~vgpvf~ 166 (243)
T 3o63_A 117 HLGQ--------RD-----LPV----NVARQILA-PDTLIGR--STHDPDQVAAAAAGDADYFCVGPCWP 166 (243)
T ss_dssp EECT--------TS-----SCH----HHHHHHSC-TTCEEEE--EECSHHHHHHHHHSSCSEEEECCSSC
T ss_pred EecC--------Cc-----CCH----HHHHHhhC-CCCEEEE--eCCCHHHHHHHhhCCCCEEEEcCccC
Confidence 5542 11 121 12233221 1222222 57999999999999999999998774
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=90.59 E-value=1.3 Score=43.41 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=49.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCC---CC--Cc-----hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEE
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSS---QG--NS-----SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~---~g--~~-----~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I 314 (505)
.+...++++.++++|+|+|-|... .| .+ ..++..++.+++.++++||.+ .-...+.++.+.++|++.|
T Consensus 64 ~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI-DT~~~~VaeaAl~aGa~iI 141 (318)
T 2vp8_A 64 DAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV-DTWRAQVAKAACAAGADLI 141 (318)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE-ECSCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE-eCCCHHHHHHHHHhCCCEE
Confidence 345678889999999999988642 12 11 134555777777766788866 5668899999999999977
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=90.54 E-value=1.2 Score=43.16 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=61.8
Q ss_pred HHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC-cceeecccccccC-cChHHHHHHHHHHHhhcCCcEEe
Q 010640 279 MIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS-GSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIA 356 (505)
Q Consensus 279 ~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~-g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa 356 (505)
.++.+++. +-++..-++.+.-.|+.+.++|.|+|.++..+ +....+ ..+.+ ++.-+.+..++..++..++||++
T Consensus 13 ~lr~l~~~--~~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G--~pD~~~vt~~em~~~~~~I~r~~~~Pvia 88 (298)
T 3eoo_A 13 KFRAAVAA--EQPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLG--IPDLGISTMDDVLVDANRITNATNLPLLV 88 (298)
T ss_dssp HHHHHHHH--SSSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTC--CCSSSCCCHHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHhC--CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcC--CCCCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 34444444 45666668899999999999999999987311 111111 11112 23333455566667777899999
Q ss_pred cC--CCCCHHHHH----HHHHhCCCEEEec
Q 010640 357 DG--GISNSGHIV----KALVLGASTVMMG 380 (505)
Q Consensus 357 ~G--GI~~~~di~----kal~lGA~~V~~G 380 (505)
|+ |-.++.++. ....+||++|.+=
T Consensus 89 D~d~Gyg~~~~v~~~v~~l~~aGaagv~iE 118 (298)
T 3eoo_A 89 DIDTGWGGAFNIARTIRSFIKAGVGAVHLE 118 (298)
T ss_dssp ECTTCSSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred ECCCCCCCHHHHHHHHHHHHHhCCeEEEEC
Confidence 96 544665543 3456999999764
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=5.1 Score=39.95 Aligned_cols=119 Identities=8% Similarity=0.147 Sum_probs=79.5
Q ss_pred CCccHHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHH----HHcCCCEEEE
Q 010640 245 TRESDKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNL----IEAGVDGLRV 316 (505)
Q Consensus 245 ~~~~~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l----~~aGad~I~v 316 (505)
+++...+.++.+++. |...+-+..........++.++.+|+.+ ++.++++- .--+.++|..+ .+.|++.|.-
T Consensus 139 ~~~~~~~~a~~~~~~~G~~~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq 218 (367)
T 3dg3_A 139 DPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAEE 218 (367)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEES
T ss_pred CHHHHHHHHHHHHHhcCccEEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEC
Confidence 445566777788888 9999888664322225688889999987 57888773 22366665443 3456666631
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. +. ...+..+ ++..+..++||.+++.+.+..|+.+++..| +|.|++-
T Consensus 219 P-----------~~---~~d~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k 266 (367)
T 3dg3_A 219 L-----------CP---ADDVLSR---RRLVGQLDMPFIADESVPTPADVTREVLGGSATAISIK 266 (367)
T ss_dssp C-----------SC---TTSHHHH---HHHHHHCSSCEEECTTCSSHHHHHHHHHHTSCSEEEEC
T ss_pred C-----------CC---cccHHHH---HHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEEee
Confidence 1 10 0123333 333445689999999999999999999988 7888874
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=90.47 E-value=5.3 Score=39.36 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=79.2
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-c-cCCHHHH----HHHHHcCCC--EEEE
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-N-VVTMYQA----QNLIEAGVD--GLRV 316 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~-V~t~e~a----~~l~~aGad--~I~v 316 (505)
.+++..+.+..+.+.|.+.+-+...+ .....++.++.+|+.-++.++.+- + --+.+++ +.+.+.|++ .|.-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE~ 217 (345)
T 2zad_A 139 TVENRVKEAKKIFEEGFRVIKIKVGE-NLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQ 217 (345)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEEC
T ss_pred CHHHHHHHHHHHHHcCcCEEEEeecC-CHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeeeC
Confidence 34456667777888999999887654 234467788888887457888772 1 1255554 556667888 7632
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEe
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMM 379 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~ 379 (505)
. +. ......+..+ .+..++||.+++.+.+..++.+++..| +|.|++
T Consensus 218 P-----------~~---~~~~~~~~~l---~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 218 P-----------VR---REDIEGLKFV---RFHSPFPVAADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp C-----------SC---TTCHHHHHHH---HHHSSSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred C-----------CC---cccHHHHHHH---HHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 1 10 1123333333 344679999999999999999999888 788887
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.41 E-value=1.6 Score=42.35 Aligned_cols=113 Identities=15% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHHHHcCccEEE--EeCCCCC--chhHHHHHHHHHHhC--CCceEEEc---------cc---CCHH----HHHHHHHc
Q 010640 252 RLEHLVKAGVNVVV--LDSSQGN--SSFQIEMIKYAKKTY--PELDVIGG---------NV---VTMY----QAQNLIEA 309 (505)
Q Consensus 252 ~~~~lieaGad~I~--i~~~~g~--~~~~~~~i~~l~~~~--~~~~Vi~g---------~V---~t~e----~a~~l~~a 309 (505)
.++.+++.|+|++. ++...|. ...+++.+.++.+.+ -++|+++- .+ .+++ .++.+.++
T Consensus 133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL 212 (307)
T 3fok_A 133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL 212 (307)
T ss_dssp CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 46677888999976 4444332 234444444444322 16776652 12 2443 45667778
Q ss_pred CCC----EEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCC--HHH----HHHHHH-hCCCEEE
Q 010640 310 GVD----GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISN--SGH----IVKALV-LGASTVM 378 (505)
Q Consensus 310 Gad----~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~--~~d----i~kal~-lGA~~V~ 378 (505)
|+| .+++-. + +.+ .+..+.+.+||+.+||=.. ..+ +..|+. .||.++.
T Consensus 213 GADs~~tivK~~y-------~-----------e~f---~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~ 271 (307)
T 3fok_A 213 GNDSSYTWMKLPV-------V-----------EEM---ERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLT 271 (307)
T ss_dssp SSCCSSEEEEEEC-------C-----------TTH---HHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEE
T ss_pred CCCcCCCEEEeCC-------c-----------HHH---HHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEe
Confidence 999 998731 1 112 3334445699999998774 344 456778 6999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+|+-+..
T Consensus 272 vGRNIfQ 278 (307)
T 3fok_A 272 VGRTLLY 278 (307)
T ss_dssp ECTTTSS
T ss_pred echhhcc
Confidence 9987543
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=90.37 E-value=1.7 Score=41.42 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCccEEEEeC---CCCC----chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDS---SQGN----SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~---~~g~----~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.++++.+.+....++.+.+ ..|. .....+.++.+++.. ++||.+ +++.+++++..+..+|+|+++||
T Consensus 160 ~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 160 DDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3556666665444443322 1222 233468888898876 788877 56778999999999999999986
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=90.37 E-value=1.4 Score=42.80 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=61.2
Q ss_pred HHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC-cceeecccccccC-cChHHHHHHHHHHHhhcCCcEEec
Q 010640 280 IKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS-GSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIAD 357 (505)
Q Consensus 280 i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~-g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~ 357 (505)
++.+++. +-++..-++.+.-.|+.+.++|.|+|.++..+ +....+ ..+.+ ++.-+.+..++..++..++||++|
T Consensus 9 lr~l~~~--~~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G--~pD~~~vt~~em~~~~~~I~~~~~~PviaD 84 (295)
T 1xg4_A 9 FRAALTK--ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLG--LPDLGISTLDDVLTDIRRITDVCSLPLLVD 84 (295)
T ss_dssp HHHHHHH--SSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTC--CCSSSCSCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHhC--CCcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcC--CCCCCCCCHHHHHHHHHHHHhhCCCCEEec
Confidence 3444444 34666668899999999999999999987321 111111 11112 333344555666777778999999
Q ss_pred C--CCC-CHHHHH----HHHHhCCCEEEe
Q 010640 358 G--GIS-NSGHIV----KALVLGASTVMM 379 (505)
Q Consensus 358 G--GI~-~~~di~----kal~lGA~~V~~ 379 (505)
. |-. ++.++. +...+||++|.+
T Consensus 85 ~d~Gyg~~~~~~~~~v~~l~~aGa~gv~i 113 (295)
T 1xg4_A 85 ADIGFGSSAFNVARTVKSMIKAGAAGLHI 113 (295)
T ss_dssp CTTCSSSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCcccCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 6 544 555443 456789999976
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=2.4 Score=41.23 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 113 (301)
T 1xky_A 34 KTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVML 113 (301)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 36677888999999999987766532 23344444444433 36899886432 355667788899999977
Q ss_pred ccCCcceeecccccccCcChHHH-HHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQATA-VYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~-l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
.. +.+. .|+-.. +.-....++..++|||.= .|+.=..+..+-|+
T Consensus 114 ~~----P~y~-------~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 163 (301)
T 1xky_A 114 VA----PYYN-------KPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLS 163 (301)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred cC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHH
Confidence 41 1111 122232 333344555567888763 25543444444443
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=90.34 E-value=1.7 Score=42.41 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 30 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 109 (309)
T 3fkr_A 30 SQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMA 109 (309)
T ss_dssp HHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEE
Confidence 46677888999999999887665532 23344444444433 36899986332 355678888999999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 110 ~ 110 (309)
T 3fkr_A 110 M 110 (309)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.31 E-value=2 Score=39.69 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
...+.++.+.+....+ .|-.+. ...-+..++.+.+. ++++-+.-+.|...|..+.++|++++. +..+|
T Consensus 67 ~mi~eA~~l~~~~~nv-~IKIP~--T~eGl~A~~~L~~~--GI~vn~TliFS~~QA~~aa~AGa~~iS-------pfvgR 134 (220)
T 1l6w_A 67 GMVNDALKLRSIIADI-VVKVPV--TAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVA-------PYVNR 134 (220)
T ss_dssp HHHHHHHHHHHHSTTC-EEEEEC--SHHHHHHHHHHHHH--TCCEEEEEECSHHHHHHHHHHTCSEEE-------EBHHH
T ss_pred HHHHHHHHHHHhCCCE-EEEeCC--CHHHHHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHCCCeEEE-------eccch
Confidence 3555566666655443 222211 12335666777676 788877778899999999999999873 23333
Q ss_pred cccccCcChHHHHHHHHHHHhhcC--CcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSG--VPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~--ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
...||.+....+.++.++.+.++ ..++++ +++++.++..|..+|++.+-+....
T Consensus 135 -idd~g~~G~~~i~~~~~~y~~~~~~t~il~A-S~r~~~~v~~~~l~G~d~~Tip~~~ 190 (220)
T 1l6w_A 135 -IDAQGGSGIQTVTDLHQLLKMHAPQAKVLAA-SFKTPRQALDCLLAGCESITLPLDV 190 (220)
T ss_dssp -HHHTTSCHHHHHHHHHHHHHHHCTTCEEEEB-CCSSHHHHHHHHHTTCSEEEECHHH
T ss_pred -hhcccccHHHHHHHHHHHHHhcCCCeEEeec-ccCCHHHHHHHHHhCCCeEECCHHH
Confidence 45577788888888887776654 445554 8999999999999999997776544
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=90.27 E-value=2.5 Score=40.77 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 101 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLS 101 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46678888999999999987766532 23344444444433 36899986432 345677788899999977
Q ss_pred ccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCC-CHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGIS-NSGHIVKA 369 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~-~~~di~ka 369 (505)
.. +.+. .|+-. .+....+.++..++||+.= .|+. ++..+.+.
T Consensus 102 ~~----P~y~-------~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L 150 (289)
T 2yxg_A 102 IT----PYYN-------KPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLL 150 (289)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred CC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHH
Confidence 41 1111 12222 2333344455567888763 2554 44444443
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=90.12 E-value=5.6 Score=40.70 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=81.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCC------CC------chhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HH
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQ------GN------SSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QN 305 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~------g~------~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~ 305 (505)
++++..+.++.+++.|...+-+.... |. ....++.++.+|+.+ ++.++++. .--+.++| +.
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~ 225 (433)
T 3rcy_A 146 SADMAAESAADCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQA 225 (433)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHH
Confidence 34556777888888999999886532 11 134577888888887 57888883 12356655 44
Q ss_pred HHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 306 LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 306 l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
+.+.|++.|.-.. . ......+.. ..+..++||++++.+.+..|+.+++..| +|.|++-
T Consensus 226 Le~~~i~~iEeP~-----------~---~~~~~~~~~---l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d 284 (433)
T 3rcy_A 226 IEPYSPLWYEEPV-----------P---PDNVGAMAQ---VARAVRIPVATGERLTTKAEFAPVLREGAAAILQPA 284 (433)
T ss_dssp HGGGCCSEEECCS-----------C---TTCHHHHHH---HHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred hhhcCCCEEECCC-----------C---hhhHHHHHH---HHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 5567888884221 0 012333433 3445689999999999999999999987 7888775
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.10 E-value=2.6 Score=40.76 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (294)
T 2ehh_A 22 ALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALV 101 (294)
T ss_dssp HHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 36677888999999999987766532 23344444444433 36899986432 345667788899999977
Q ss_pred ccCCcceeecccccccCcChHHH-HHHHHHHHhhcCCcEEec-----CCC-CCHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQATA-VYKVSSIAAQSGVPVIAD-----GGI-SNSGHIVKA 369 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~-l~~v~~~~~~~~ipvIa~-----GGI-~~~~di~ka 369 (505)
.. +.+. .|+-.. +......++..++||+.= .|+ .++..+.+.
T Consensus 102 ~~----P~y~-------~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 150 (294)
T 2ehh_A 102 VV----PYYN-------KPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKL 150 (294)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred CC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHH
Confidence 41 1111 122222 333344455567888763 255 344444444
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.82 Score=45.87 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCC--CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ--GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~--g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
..+.++.+.+.|+|++.++... +.....++.++.+++.+ ++||++ |.+ +.+.+..+++.| +|+|.++
T Consensus 252 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~-~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~ig 322 (365)
T 2gou_A 252 YTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAY-QGVLIYAGRY-NAEKAEQAINDGLADMIGFG 322 (365)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTTSCSEEECC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHC-CCcEEEeCCC-CHHHHHHHHHCCCcceehhc
Confidence 4556788888999999996531 11112356788889988 788877 667 999999999998 9999664
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.4 Score=41.92 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=59.9
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc-CcChHHHHHHHHHHHhhcCCcEEecC--CCCC--H
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV-GRGQATAVYKVSSIAAQSGVPVIADG--GISN--S 363 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~-g~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~--~ 363 (505)
+-+++.-++.+.-.|+.+.++|+|+|.++..+-+...+ ..+. .++.-+.+..++..++..++||++|. |-.+ .
T Consensus 19 ~~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G--~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~~ 96 (255)
T 2qiw_A 19 GKLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATG--SSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSPA 96 (255)
T ss_dssp CCCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTT--CCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCHH
T ss_pred CCcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCC--CCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHHH
Confidence 45677778899999999999999999986311111111 1111 23434455566667777789999995 4222 5
Q ss_pred HHHHHHHHhCCCEEEec
Q 010640 364 GHIVKALVLGASTVMMG 380 (505)
Q Consensus 364 ~di~kal~lGA~~V~~G 380 (505)
.-+.+.+..||++|.+=
T Consensus 97 ~~~~~l~~aGa~gv~iE 113 (255)
T 2qiw_A 97 DLIAQILEAGAVGINVE 113 (255)
T ss_dssp HHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHcCCcEEEEC
Confidence 56667778999999773
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.00 E-value=2.9 Score=40.67 Aligned_cols=70 Identities=27% Similarity=0.400 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 38 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv 117 (304)
T 3cpr_A 38 AGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLV 117 (304)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 36678888999999999987766532 23344455444443 36899986432 355677788899999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 118 ~ 118 (304)
T 3cpr_A 118 V 118 (304)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=2.4 Score=42.77 Aligned_cols=120 Identities=10% Similarity=0.108 Sum_probs=83.5
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc-c-cCCHHHH----HHHHHcCCCEEEEc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG-N-VVTMYQA----QNLIEAGVDGLRVG 317 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g-~-V~t~e~a----~~l~~aGad~I~v~ 317 (505)
++++..+.++.+.+.|.+.+-+.... .....++.++.+|+.+ ++.++++. | --+.++| +.+.+.|++.|.-.
T Consensus 151 ~~e~~~~~a~~~~~~G~~~iKiKvG~-~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEqP 229 (389)
T 3ozy_A 151 TPDQAADELAGWVEQGFTAAKLKVGR-APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFEEP 229 (389)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEESC
T ss_pred CHHHHHHHHHHHHHCCCCEEeeccCC-CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEECC
Confidence 34556677788888999999887643 2456788889999987 57888873 1 1255554 55667899888421
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIA-AQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~-~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
. . ......+ ++.. +..++||++++.+.+..|+.+++..| +|.|++-..
T Consensus 230 ~-----------~---~~d~~~~---~~l~~~~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~ 279 (389)
T 3ozy_A 230 L-----------S---IDDIEGH---RILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQADAS 279 (389)
T ss_dssp S-----------C---TTCHHHH---HHHHTTCCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTT
T ss_pred C-----------C---cccHHHH---HHHHhcCCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcc
Confidence 1 0 0122333 3444 55689999999999999999999887 788887643
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.96 E-value=1.1 Score=43.27 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=59.8
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCC-cceeecccccccC-cChHHHHHHHHHHHhhcCCcEEecC--CCCCHH
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS-GSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADG--GISNSG 364 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~-g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~ 364 (505)
+-++..-++.+.-.|+.+.++|+|+|.++..+ +....+ ..+.+ ++.-+.+..++..++..++||++|. |-.++.
T Consensus 20 ~~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG--~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~ 97 (287)
T 3b8i_A 20 SRCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLA--APDFALITLSEFVEQATRIGRVARLPVIADADHGYGNAL 97 (287)
T ss_dssp SCCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHS--CCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcC--CCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHH
Confidence 44666668899999999999999999987321 111111 11112 3444455566777777789999996 544665
Q ss_pred HH----HHHHHhCCCEEEec
Q 010640 365 HI----VKALVLGASTVMMG 380 (505)
Q Consensus 365 di----~kal~lGA~~V~~G 380 (505)
++ .+.+.+||++|.+=
T Consensus 98 ~~~~~v~~l~~aGa~gv~iE 117 (287)
T 3b8i_A 98 NVMRTVVELERAGIAALTIE 117 (287)
T ss_dssp HHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHhCCeEEEEc
Confidence 54 34567999999873
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=89.94 E-value=3.8 Score=41.39 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=81.4
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCC-CC-Cc-hhHHHHHHHHHHhC-CCceEEEc--ccC--CHHHH----HHHHHcCCC
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSS-QG-NS-SFQIEMIKYAKKTY-PELDVIGG--NVV--TMYQA----QNLIEAGVD 312 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~-~g-~~-~~~~~~i~~l~~~~-~~~~Vi~g--~V~--t~e~a----~~l~~aGad 312 (505)
..++..+.+..+.++|.+.+-+..+ .| .. ....+.++.+|+.+ ++.++.+. .-- +.+++ +.+.+.|++
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~spvG~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~ 224 (401)
T 2hzg_A 145 TPQETLERARAARRDGFAAVKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVL 224 (401)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEESTTTTSSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCC
Confidence 3445667777888899999988721 12 23 45678888899887 57888773 123 55554 556678988
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHh-hcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA-QSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~-~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
.|.-.. . ......+ ++..+ ..++||++++.+.+..++.+++..| +|+|++-
T Consensus 225 ~iEqP~-----------~---~~d~~~~---~~l~~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 277 (401)
T 2hzg_A 225 WLEEPF-----------D---AGALAAH---AALAGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQID 277 (401)
T ss_dssp EEECCS-----------C---TTCHHHH---HHHHTTCCSSEEEECTTCSSHHHHHHHHHHSCCSEEEEC
T ss_pred EEECCC-----------C---ccCHHHH---HHHHhhCCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeC
Confidence 874221 0 0122333 33344 4679999999999999999999887 8999884
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=89.91 E-value=0.98 Score=45.13 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|+|.+....|.. ...++.+..+.+.. . |||+ |++.+..++.+++.+|||++.++
T Consensus 152 ~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~-~-PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 152 YAGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRAD-R-SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp HHHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSS-S-EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhC-C-CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 356788999999999984332221 12344444444332 2 8877 89999999999999999999886
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=89.89 E-value=2.6 Score=41.03 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=67.6
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~ 315 (505)
+...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.
T Consensus 36 ~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavl 115 (304)
T 3l21_A 36 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLL 115 (304)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 346678889999999999987766632 33344444444433 36899996432 35567888889999997
Q ss_pred EccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 316 VGMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
+.. +.+. .|+.. .+......++..++||+.= -|+.=..+....|+
T Consensus 116 v~~----P~y~-------~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 116 VVT----PYYS-------KPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp EEC----CCSS-------CCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred ECC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 741 1111 12222 2333344555567888754 14444444444444
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.88 E-value=0.2 Score=47.95 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.+.|+.+.+.|++.+.+- .+.+ .....+.++ ++...+|+...|||++- |+.+.+ +||+-|.+
T Consensus 41 ~~~A~~~~~~Ga~~l~vv----------DL~~---~n~~~i~~i---~~~~~~pv~vgGGir~~-~~~~~l-~Ga~~Vii 102 (260)
T 2agk_A 41 SYYAKLYKDRDVQGCHVI----------KLGP---NNDDAAREA---LQESPQFLQVGGGINDT-NCLEWL-KWASKVIV 102 (260)
T ss_dssp HHHHHHHHHTTCTTCEEE----------EESS---SCHHHHHHH---HHHSTTTSEEESSCCTT-THHHHT-TTCSCEEE
T ss_pred HHHHHHHHHcCCCEEEEE----------eCCC---CCHHHHHHH---HhcCCceEEEeCCCCHH-HHHHHh-cCCCEEEE
Confidence 456788888999877542 0111 233444443 44467999999999987 999999 99999999
Q ss_pred cccccCC
Q 010640 380 GSFLAGS 386 (505)
Q Consensus 380 G~~f~~~ 386 (505)
|+..+..
T Consensus 103 gs~a~~~ 109 (260)
T 2agk_A 103 TSWLFTK 109 (260)
T ss_dssp CGGGBCT
T ss_pred CcHHHhh
Confidence 9987643
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=4.8 Score=40.49 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=81.9
Q ss_pred CCccHHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEE
Q 010640 245 TRESDKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRV 316 (505)
Q Consensus 245 ~~~~~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v 316 (505)
+++...+.++.+++. |...+-+..........++.++.+|+.+ +++++++- .--+.++| +.+.+.|++.|.-
T Consensus 167 ~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe 246 (383)
T 3toy_A 167 DARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIEE 246 (383)
T ss_dssp CHHHHHHHHHHHHHTSCCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEEC
T ss_pred CHHHHHHHHHHHHHccCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEEC
Confidence 344566777888888 9999888665434456788899999987 67888873 12355555 4455578877732
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
. +. ...+..+. +..+..++||.++..+.+..|+.+++..| +|.|++--
T Consensus 247 P-----------~~---~~d~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik~ 295 (383)
T 3toy_A 247 P-----------VP---QENLSGHA---AVRERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDL 295 (383)
T ss_dssp C-----------SC---TTCHHHHH---HHHHHCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCT
T ss_pred C-----------CC---cchHHHHH---HHHhhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 1 10 01233333 33445689999999999999999999988 67777653
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.86 E-value=2.5 Score=41.73 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 56 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 135 (332)
T 2r8w_A 56 AFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLL 135 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 36678888999999999987766532 23344455444443 36899886332 345667788899999977
Q ss_pred ccCCcceeecccccccCcChHHH-HHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQATA-VYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~-l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
.. +.+. .|+-.. +.-....++..++|||.= .|+.=..+..+-|+
T Consensus 136 ~~----P~Y~-------~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La 185 (332)
T 2r8w_A 136 AP----VSYT-------PLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLA 185 (332)
T ss_dssp CC----CCSS-------CCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHH
T ss_pred CC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 42 1111 122222 333344555567888763 25543344444443
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=89.85 E-value=0.64 Score=44.40 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHHcCccEEEEeC-CCCC--chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 251 ERLEHLVKAGVNVVVLDS-SQGN--SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~-~~g~--~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++++.+.+.|++++.... ..|. .....+.++++++.. ++|+++ |++.+++++..+.++|+|++.|+
T Consensus 138 ~~a~~~~~~gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~-~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 138 VLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQA-KVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHhCCCEEEECCcccCCCCCCCCHHHHHHHHhcC-CCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 567778888999884311 1121 111256777888765 789877 58889999999999999999886
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=89.84 E-value=2.2 Score=40.64 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=71.7
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC---------CCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ---------GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~---------g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+...+.++.+.++|++++-+..-. |.....+..++.+++.+ ++|++. ++.+.+.+..+.+. +|++.++
T Consensus 37 e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~-Gl~~~t-e~~d~~~~~~l~~~-vd~~kIg 113 (262)
T 1zco_A 37 EQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEY-GLVTVT-EVMDTRHVELVAKY-SDILQIG 113 (262)
T ss_dssp HHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH-TCEEEE-ECCCGGGHHHHHHH-CSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHc-CCcEEE-eeCCHHhHHHHHhh-CCEEEEC
Confidence 346777888889999998775421 11133445555555554 788876 88888889999999 9999886
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC-CHHHHHHHHH
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS-NSGHIVKALV 371 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~-~~~di~kal~ 371 (505)
.+ ... ....+ ++. .+.+.||+..-|.. +..++..|..
T Consensus 114 a~--------~~~-----n~~ll---~~~-a~~~kPV~lk~G~~~t~~e~~~Av~ 151 (262)
T 1zco_A 114 AR--------NSQ-----NFELL---KEV-GKVENPVLLKRGMGNTIQELLYSAE 151 (262)
T ss_dssp GG--------GTT-----CHHHH---HHH-TTSSSCEEEECCTTCCHHHHHHHHH
T ss_pred cc--------ccc-----CHHHH---HHH-HhcCCcEEEecCCCCCHHHHHHHHH
Confidence 21 111 11122 222 33789999999997 9999998884
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=0.68 Score=42.95 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=74.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEEE--ccc---CC----HHHHHHHHHcCCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVIG--GNV---VT----MYQAQNLIEAGVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi~--g~V---~t----~e~a~~l~~aGad~I~ 315 (505)
++..+.++.+.+.+++.++++. .+... .++.+. ++.+.. +-- .+ ..+++.+++.|||.|+
T Consensus 19 ~~i~~l~~~a~~~~~~aVcv~p------~~v~~---~~~~l~~~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~GAdevd 89 (220)
T 1ub3_A 19 EEVAKAAEEALEYGFYGLCIPP------SYVAW---VRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVD 89 (220)
T ss_dssp HHHHHHHHHHHHHTCSEEECCG------GGHHH---HHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECH------HHHHH---HHHHhCCCCceEEEEecCCCCCCchHHHHHHHHHHHHcCCCEEE
Confidence 4456677777788999998732 23333 233332 344322 110 11 2577889999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH----HhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL----VLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal----~lGA~~V~~G~~f~ 384 (505)
+-..-|. ...+.---...-+..+.+.|....+|+|..-+..+...+.+|- .+|||+|--.|-|.
T Consensus 90 ~vinig~-----~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsTGf~ 157 (220)
T 1ub3_A 90 MVLHLGR-----AKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG 157 (220)
T ss_dssp EECCHHH-----HHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS
T ss_pred ecccchh-----hhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC
Confidence 8532111 1111001123445555666654468988888888988887764 67999998887664
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=89.75 E-value=0.86 Score=46.34 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCccEEEEeCCC----------CCchhHHHHHHHHHHhC--CCceEEE-cccCCHHHHHHHHHcCCCEEEE
Q 010640 250 KERLEHLVKAGVNVVVLDSSQ----------GNSSFQIEMIKYAKKTY--PELDVIG-GNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~----------g~~~~~~~~i~~l~~~~--~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v 316 (505)
.+.++.+.++|+|+|.+.... ++....++.+..+++.. .++||++ |++.+.+++.+++.+|||++.+
T Consensus 205 ~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 205 KEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 467788889999999982211 11112345555565532 2789887 8999999999999999999988
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
+
T Consensus 285 G 285 (404)
T 1eep_A 285 G 285 (404)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=89.62 E-value=1.1 Score=45.00 Aligned_cols=67 Identities=22% Similarity=0.430 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCC--CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ--GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~--g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
..+.++.+.+.|+|++.++... +.....++.++.+++.+ ++||++ |.+ +.+.+..+++.| +|+|.++
T Consensus 253 ~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~-~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~g 323 (364)
T 1vyr_A 253 ALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERF-HGVIIGAGAY-TAEKAEDLIGKGLIDAVAFG 323 (364)
T ss_dssp HHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHC-CCCEEEECCc-CHHHHHHHHHCCCccEEEEC
Confidence 4456778888999999997521 11112356788888888 789877 566 999999999998 9999775
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.59 E-value=3 Score=40.35 Aligned_cols=113 Identities=17% Similarity=0.193 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 29 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 108 (297)
T 3flu_A 29 QLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLS 108 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 46677888999999999987766632 23344444444433 36899986432 345677888999999976
Q ss_pred ccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
.. +.+. .|+-. .+......++..++||+.= -|+.=..+..+-|+
T Consensus 109 ~~----P~y~-------~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 158 (297)
T 3flu_A 109 VV----PYYN-------KPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLA 158 (297)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred CC----CCCC-------CCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHH
Confidence 41 1111 12222 2333344555567888764 25544444444443
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=2.7 Score=40.85 Aligned_cols=70 Identities=23% Similarity=0.257 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-C-CceEEEcccC-----CHHHHHHHHHcCCCEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-P-ELDVIGGNVV-----TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~-~~~Vi~g~V~-----t~e~a~~l~~aGad~I~ 315 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. . ++||++|.-. +.+.++.+.++|+|++.
T Consensus 29 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavl 108 (301)
T 3m5v_A 29 SYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGIL 108 (301)
T ss_dssp HHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 46677888999999999987766632 23344455444443 3 5899996432 35567788889999997
Q ss_pred Ec
Q 010640 316 VG 317 (505)
Q Consensus 316 v~ 317 (505)
+.
T Consensus 109 v~ 110 (301)
T 3m5v_A 109 SV 110 (301)
T ss_dssp EE
T ss_pred Ec
Confidence 74
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.46 Score=48.04 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|.|.+....|. ....++.+..+++.+ +.||++ |++.+.+++.+++.+|+|++.++
T Consensus 236 ~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~-~~pVia~GGI~~~~dv~kal~~GAdaV~iG 307 (380)
T 1p4c_A 236 AEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAKT-GKPVLIDSGFRRGSDIVKALALGAEAVLLG 307 (380)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHHH-CSCEEECSSCCSHHHHHHHHHTTCSCEEES
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHc-CCeEEEECCCCCHHHHHHHHHhCCcHhheh
Confidence 46788899999999999332121 112356677777765 558877 89999999999999999999775
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=89.30 E-value=5.8 Score=39.84 Aligned_cols=117 Identities=19% Similarity=0.297 Sum_probs=79.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-c-cCCHH----HHHHHHHcCCCEEEEccCC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-N-VVTMY----QAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~-V~t~e----~a~~l~~aGad~I~v~~g~ 320 (505)
+...+.++.+++.|...+-+..........++.++.+|+.++++++++- | --+.+ -++.+.+.|++.|.-.
T Consensus 150 ~~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iEqP--- 226 (385)
T 3i6e_A 150 DADIALMERLRADGVGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIEQP--- 226 (385)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSCHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCEECC---
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEECC---
Confidence 3455667777788999988866443335668888899998888888883 1 11333 4455666788777321
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
+. ......+ ++..+..++||.++.-+.+..|+.+++..| +|.|++-
T Consensus 227 --------~~---~~d~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k 273 (385)
T 3i6e_A 227 --------VR---AHHFELM---ARLRGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIK 273 (385)
T ss_dssp --------SC---TTCHHHH---HHHHTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred --------CC---cccHHHH---HHHHHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence 10 0122333 344455689999999999999999999887 7888764
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=89.20 E-value=3.1 Score=40.19 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (291)
T 3tak_A 23 SLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALL 102 (291)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46677888999999999887766632 33344444444433 36899986432 345667888899999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 103 ~ 103 (291)
T 3tak_A 103 V 103 (291)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.20 E-value=3.2 Score=40.52 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhCCCceEEEcccC-----CHHHHHHHHHcCCCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTYPELDVIGGNVV-----TMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v~ 317 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+...++||++|.-. +.+.++.+.++|+|++.+.
T Consensus 30 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 109 (313)
T 3dz1_A 30 SIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIA 109 (313)
T ss_dssp HHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 46677888999999999887665532 3334555555554457899996432 3556788888999999774
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=6.2 Score=39.08 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=80.1
Q ss_pred cCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHHH----HcCCCEEEE
Q 010640 244 GTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNLI----EAGVDGLRV 316 (505)
Q Consensus 244 ~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l~----~aGad~I~v 316 (505)
.+++...+.++.+.+.|...+-+..... ....++.++.+|+.+ +++++++- .--+.+++..+. +.|++.|.-
T Consensus 138 ~~~~~~~~~a~~~~~~G~~~~K~K~g~~-~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iEq 216 (354)
T 3jva_A 138 DEPNVMAQKAVEKVKLGFDTLKIKVGTG-IEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQ 216 (354)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEECCSC-HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCCC-HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEC
Confidence 3445566777888889999988865432 345688889999987 67888873 223666664433 345555521
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
. +. ......+. +..+..++||.+++.+.+..|+.+++..| +|.|++--
T Consensus 217 P-----------~~---~~d~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~ 265 (354)
T 3jva_A 217 P-----------VK---RRDLEGLK---YVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKL 265 (354)
T ss_dssp C-----------SC---TTCHHHHH---HHHHHCSSEEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred C-----------CC---hhhHHHHH---HHHHhCCCCEEEcCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 1 11 11233333 33445689999999999999999999886 68888864
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=89.11 E-value=2.7 Score=42.20 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=79.5
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHHH----HcCCCEEEEc
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNLI----EAGVDGLRVG 317 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l~----~aGad~I~v~ 317 (505)
+++...+.++.+.+.|.+.+-+.... .....++.++.+|+.+ +++++++. .--+.+++..+. +.|+ .|.-
T Consensus 145 ~~e~~~~~a~~~~~~G~~~iKiK~G~-~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iEq- 221 (378)
T 3eez_A 145 SVEETRAVIDRYRQRGYVAHSVKIGG-DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFEQ- 221 (378)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEEC-
T ss_pred CHHHHHHHHHHHHhCCCCEEEeccCC-CHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEec-
Confidence 34456667777888999999886643 2345678888888887 57888873 123666654433 3454 4421
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEeccc
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGSF 382 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~ 382 (505)
. .+... ..++..+..++||++++.+.+..|+.+++..| +|.|++...
T Consensus 222 ----------P-----~~~~~---~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~ 269 (378)
T 3eez_A 222 ----------P-----GETLD---DIAAIRPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLN 269 (378)
T ss_dssp ----------C-----SSSHH---HHHHTGGGCCCCEEECTTCCSHHHHHHHHHTTCCSEEEEEHH
T ss_pred ----------C-----CCCHH---HHHHHHhhCCCCEEECCCCCCHHHHHHHHHcCCCCEEEeCch
Confidence 1 12222 33444556789999999999999999999987 799988643
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=89.07 E-value=4.6 Score=40.72 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=81.6
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEcc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGM 318 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~ 318 (505)
+++..+.++.+.+.|...+-+.... .....++.++.+|+.+ ++.++++- .--+.++| +.+.+.|++.|.-..
T Consensus 156 ~e~~~~~a~~~~~~G~~~iKlK~g~-~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iEeP~ 234 (392)
T 3ddm_A 156 PENPEDVVARKAAEGYRAFKLKVGF-DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLEEPL 234 (392)
T ss_dssp SSSHHHHHHHHHHHTCCCEEEECSS-CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEECCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEECCC
Confidence 5667888888999999998887654 3456788889999987 57788773 12355555 445557888774211
Q ss_pred CCcceeecccccccCcCh-HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQ-ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~-~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. ... +..+. +..+..++||.+++.+.+..|+.+++..| +|.|++-
T Consensus 235 -----------~---~~d~~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 281 (392)
T 3ddm_A 235 -----------R---ADRPAAEWA---ELAQAAPMPLAGGENIAGVAAFETALAARSLRVMQPD 281 (392)
T ss_dssp -----------C---TTSCHHHHH---HHHHHCSSCEEECTTCCSHHHHHHHHHHTCEEEECCC
T ss_pred -----------C---ccchHHHHH---HHHHhcCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 0 011 33333 33445689999999999999999999887 6777764
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=89.06 E-value=3.6 Score=41.09 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=77.4
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHH-----HHcCCCEEEE
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNL-----IEAGVDGLRV 316 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l-----~~aGad~I~v 316 (505)
.+++..+.+..+.++|.+.+-++... ......+.++.+|+.+ ++.++.+. .--+.+++..+ .+.|+ .|.-
T Consensus 146 ~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~iE~ 223 (371)
T 2ps2_A 146 EPEDMRARVAKYRAKGYKGQSVKISG-EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-ALEA 223 (371)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECCS-CHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EEEC
T ss_pred CHHHHHHHHHHHHHhChheEEeecCC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cCcC
Confidence 34456677777888999999887643 2345678888888877 46888773 12366665443 33455 4421
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. .+....+ ++..+..++||++++.+.+..++.+++..| +|+|++-
T Consensus 224 -----------P-----~~~~~~~---~~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (371)
T 2ps2_A 224 -----------P-----CATWREC---ISLRRKTDIPIIYDELATNEMSIVKILADDAAEGIDLK 269 (371)
T ss_dssp -----------C-----BSSHHHH---HHHHTTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred -----------C-----cCCHHHH---HHHHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEec
Confidence 1 1123333 344445689999999999999999999987 7888884
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=1.1 Score=51.26 Aligned_cols=70 Identities=11% Similarity=0.183 Sum_probs=53.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCC-------------------CC------Cc-hhH----HHHHHHHHHhCCCceEEE-cc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSS-------------------QG------NS-SFQ----IEMIKYAKKTYPELDVIG-GN 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~-------------------~g------~~-~~~----~~~i~~l~~~~~~~~Vi~-g~ 296 (505)
+..+.++.+.+.|+|.+.+..+ ++ .+ ... ++.+..+++.++++|||+ |+
T Consensus 716 ~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GG 795 (1025)
T 1gte_A 716 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGG 795 (1025)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred HHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecC
Confidence 4677888999999999988210 11 11 111 467888888876788876 89
Q ss_pred cCCHHHHHHHHHcCCCEEEEc
Q 010640 297 VVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 297 V~t~e~a~~l~~aGad~I~v~ 317 (505)
+.+.+++.+++.+|+|++.++
T Consensus 796 I~s~~da~~~l~~Ga~~v~vg 816 (1025)
T 1gte_A 796 IDSAESGLQFLHSGASVLQVC 816 (1025)
T ss_dssp CCSHHHHHHHHHTTCSEEEES
T ss_pred cCCHHHHHHHHHcCCCEEEEe
Confidence 999999999999999999886
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=89.04 E-value=1.4 Score=42.75 Aligned_cols=90 Identities=19% Similarity=0.069 Sum_probs=56.2
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccC-cChHHHHHHHHHHHhhcCCcEEecC--CCCCHHH
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADG--GISNSGH 365 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~d 365 (505)
+-++..-++.+.-.|+.+.++|.|+|.++..+-+...+ ..+.+ ++.-+.+..++..++..++|||+|. |-.+..+
T Consensus 18 ~~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG--~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~ 95 (295)
T 1s2w_A 18 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLG--VRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNN 95 (295)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC-----------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCC--CCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHH
Confidence 44666668899999999999999999987311111111 11111 2333345556666777789999996 5445544
Q ss_pred H----HHHHHhCCCEEEec
Q 010640 366 I----VKALVLGASTVMMG 380 (505)
Q Consensus 366 i----~kal~lGA~~V~~G 380 (505)
+ .+...+||++|.+=
T Consensus 96 v~~~v~~l~~aGaagv~iE 114 (295)
T 1s2w_A 96 ARRLVRKLEDRGVAGACLE 114 (295)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHcCCcEEEEC
Confidence 4 34557999999763
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=89.03 E-value=2.8 Score=40.79 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 36 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 115 (307)
T 3s5o_A 36 KLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMV 115 (307)
T ss_dssp HHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 35667888899999999987766532 33445555555554 36899886432 355677888999999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 116 ~ 116 (307)
T 3s5o_A 116 V 116 (307)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.01 E-value=2.7 Score=41.06 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=48.8
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCc---------------hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNS---------------SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAG 310 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~---------------~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aG 310 (505)
.+...++++.++++|+|+|-|......+ ..+...++.+++.+ ++||-+ .-..++.++.+.++|
T Consensus 48 ~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~vpISI-DT~~~~Va~aAl~aG 125 (314)
T 3tr9_A 48 LNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-PQLISV-DTSRPRVMREAVNTG 125 (314)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-CSEEEE-ECSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-CCeEEE-eCCCHHHHHHHHHcC
Confidence 3457788999999999999886522111 11455666777765 788866 556789999999999
Q ss_pred CCEE
Q 010640 311 VDGL 314 (505)
Q Consensus 311 ad~I 314 (505)
++.|
T Consensus 126 a~iI 129 (314)
T 3tr9_A 126 ADMI 129 (314)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 9987
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=89.01 E-value=5.6 Score=39.59 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=79.0
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcc--cCCHHHHH-HHH----HcCCCEEEE
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGN--VVTMYQAQ-NLI----EAGVDGLRV 316 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~--V~t~e~a~-~l~----~aGad~I~v 316 (505)
.+++..+.+..+.+.|.+.+-++..+. .....+.++.+|+.+ ++.++.+.. --+.+++. .+. +.|++.|.-
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~iKik~g~~-~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iEq 219 (369)
T 2p8b_A 141 DPENMAEEAASMIQKGYQSFKMKVGTN-VKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIEQ 219 (369)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSC-HHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEEC
T ss_pred ChHHHHHHHHHHHHcCcCEEEEEeCCC-HHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEC
Confidence 344566777778889999998876432 345678888888887 578887731 12445554 333 356665531
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
. +. ......+. +..+..++||++++.+.+..++.+++..| +|+|++-.
T Consensus 220 P-----------~~---~~d~~~~~---~l~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 268 (369)
T 2p8b_A 220 P-----------VI---ADDIDAMA---HIRSKTDLPLMIDEGLKSSREMRQIIKLEAADKVNIKL 268 (369)
T ss_dssp C-----------BC---TTCHHHHH---HHHHTCCSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred C-----------CC---cccHHHHH---HHHHhCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeec
Confidence 1 10 11233333 33445689999999999999999999887 89998853
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.98 E-value=0.7 Score=42.92 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCC----chhHHHHHHHHHHhCCCceEEEc-ccCCH-HHHHHHHHcCCCEEEEccCC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGN----SSFQIEMIKYAKKTYPELDVIGG-NVVTM-YQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~----~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~-e~a~~l~~aGad~I~v~~g~ 320 (505)
....+.++.+.+.|++++.++...|+ .....+.++.+++.+ +.++.+. -+.++ +.++.+.++|+|++.+....
T Consensus 23 ~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~-~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~ 101 (230)
T 1rpx_A 23 SKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPIT-DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ 101 (230)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGC-CSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred HHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhcc-CCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecC
Confidence 45677888889999999999742221 112257788888875 4444332 23344 36788889999999663210
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
.. .+.. .++.+.+++.++.++.+=--.++.+..+++..|+|.|.+.+.
T Consensus 102 --------~~---~~~~---~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~ 149 (230)
T 1rpx_A 102 --------SS---TIHL---HRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSV 149 (230)
T ss_dssp --------TT---CSCH---HHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESS
T ss_pred --------cc---chhH---HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEE
Confidence 00 0121 123344444556665542224666777777788998865543
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=1.7 Score=43.26 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 276 QIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.++.+..+++..+++||+. |++.+.+++.+++.+|||++.++
T Consensus 264 a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vg 306 (354)
T 4ef8_A 264 ALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG 306 (354)
T ss_dssp HHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEh
Confidence 4788888988866799876 89999999999999999999876
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=2.7 Score=41.70 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 132 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVV 132 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 36678888999999999987766532 23344445444443 36899886432 345667788899999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 133 ~ 133 (343)
T 2v9d_A 133 I 133 (343)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=88.92 E-value=3.4 Score=40.15 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=48.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 33 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 112 (303)
T 2wkj_A 33 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSA 112 (303)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 35677888999999999987766532 23344444444433 36899986332 345667788899999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 113 ~ 113 (303)
T 2wkj_A 113 V 113 (303)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=0.98 Score=42.29 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=49.7
Q ss_pred HHHHHHHHcCc-----cEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 251 ERLEHLVKAGV-----NVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 251 e~~~~lieaGa-----d~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++++...+.+. .++-++. .|. ....+.++++++...++|+++ |++.+.++++.+.+ |+|.++++
T Consensus 149 e~~~~~a~~g~~~l~~~~Vyl~~-~G~-~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVG 218 (234)
T 2f6u_A 149 ELAASYALVGEKLFNLPIIYIEY-SGT-YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVG 218 (234)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEC-TTS-CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEEC
T ss_pred HHHHHHHHhhhhhcCCCEEEEeC-CCC-cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEEC
Confidence 66666666665 7777766 453 345788888988865688877 58899999999999 99999886
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.88 E-value=3.6 Score=39.81 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 25 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 104 (294)
T 3b4u_A 25 AMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILL 104 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 36678888999999999987766532 23445555555554 35789886332 355677788899999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 105 ~ 105 (294)
T 3b4u_A 105 A 105 (294)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=88.73 E-value=3.2 Score=39.43 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcC-CcEEe
Q 010640 278 EMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG-VPVIA 356 (505)
Q Consensus 278 ~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa 356 (505)
..++.+++. +-++..-++.+.-.|+.+.++|+|+|.++-..+....+..-+ ..++.-..+..++..++..+ .+|++
T Consensus 7 ~~lr~~k~~--g~~i~~~tayD~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt-~~vtldemi~h~~aV~r~~~~~~vva 83 (264)
T 1m3u_A 7 SLLQKYKQE--KKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDST-LPVTVADIAYHTAAVRRGAPNCLLLA 83 (264)
T ss_dssp HHHHHHHHH--TCCEEEEECCSHHHHHHHHHHTCCEEEECTTHHHHTTCCSSS-TTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHHC--CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhhCCCCcEEE
Confidence 344455554 446656688899999999999999998852222211111111 11222334445555666555 56888
Q ss_pred cCC---CCCHHHHH----HHHHhCCCEEEe
Q 010640 357 DGG---ISNSGHIV----KALVLGASTVMM 379 (505)
Q Consensus 357 ~GG---I~~~~di~----kal~lGA~~V~~ 379 (505)
|=+ -.++.+.+ +.+..||++|.+
T Consensus 84 D~pfgsy~~~~~a~~~a~rl~kaGa~aVkl 113 (264)
T 1m3u_A 84 DLPFMAYATPEQAFENAATVMRAGANMVKI 113 (264)
T ss_dssp ECCTTSSSSHHHHHHHHHHHHHTTCSEEEC
T ss_pred ECCCCCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 844 44777776 577899999987
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=88.73 E-value=2.7 Score=40.89 Aligned_cols=98 Identities=14% Similarity=0.195 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv 113 (306)
T 1o5k_A 34 SYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLV 113 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 36677888999999999887665522 23344444444433 36899886432 345667788899999977
Q ss_pred ccCCcceeecccccccCcChHHH-HHHHHHHHhhcCCcEEe
Q 010640 317 GMGSGSICTTQEVCAVGRGQATA-VYKVSSIAAQSGVPVIA 356 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~-l~~v~~~~~~~~ipvIa 356 (505)
.. +.+. .|+-.. +.-....++..++||+.
T Consensus 114 ~~----P~y~-------~~s~~~l~~~f~~va~a~~lPiil 143 (306)
T 1o5k_A 114 VT----PYYN-------KPTQEGLYQHYKYISERTDLGIVV 143 (306)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHTTCSSCEEE
T ss_pred CC----CCCC-------CCCHHHHHHHHHHHHHhCCCCEEE
Confidence 41 1111 122232 22334445556788876
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=88.72 E-value=5.7 Score=39.98 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=80.1
Q ss_pred CccHHHHHHHHHHc---CccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEE
Q 010640 246 RESDKERLEHLVKA---GVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLR 315 (505)
Q Consensus 246 ~~~~~e~~~~liea---Gad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~ 315 (505)
+++..+.++.+++. |...+-+..........++.++.+|+.+ +++++++- .--+.++| +.+.+.|++.|.
T Consensus 172 ~e~~~~~a~~~~~~~~~G~~~iKlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE 251 (390)
T 3ugv_A 172 AEVAAEAVELKAEGQGTGFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIE 251 (390)
T ss_dssp HHHHHHHHHHHHTTCTTCCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEE
T ss_pred HHHHHHHHHHHHHhhhCCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEE
Confidence 34556677777888 9999888665434456788889999987 57888873 12356655 344456777773
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
-. +. ...+..+. +..+..++||.++..+.+..|+.+++..| +|.|++-
T Consensus 252 qP-----------~~---~~d~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik 300 (390)
T 3ugv_A 252 EP-----------VV---YDNFDGYA---QLRHDLKTPLMIGENFYGPREMHQALQAGACDLVMPD 300 (390)
T ss_dssp CC-----------SC---TTCHHHHH---HHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred CC-----------CC---cccHHHHH---HHHHhcCCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 21 10 01233333 33445689999999999999999999987 6777765
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=88.67 E-value=2.9 Score=40.90 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 45 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 124 (314)
T 3qze_A 45 SLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLL 124 (314)
T ss_dssp HHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 46677888999999999887665532 23344444444433 36899986432 345667888899999977
Q ss_pred ccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
.. +.+. .|+-. .+.-....++..++||+.= -|+.=..+..+.|+
T Consensus 125 ~~----P~y~-------~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 174 (314)
T 3qze_A 125 VT----PYYN-------KPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLS 174 (314)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred cC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 41 1111 12222 2333344555567888764 24443344444444
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=1.8 Score=43.14 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCccEEEEeCCCCC----------chhHHHHHHHHHHhC--CCceEEE-cccCCHHHHHHHHHcCCCEEEE
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGN----------SSFQIEMIKYAKKTY--PELDVIG-GNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~----------~~~~~~~i~~l~~~~--~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v 316 (505)
.+.++.+.++|+|+|.+....|. ....+..+..+.+.. .++|||+ |++.+..++.+++.+|||++.+
T Consensus 172 ~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~v 251 (351)
T 2c6q_A 172 GEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVML 251 (351)
T ss_dssp HHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhCCCEEEECCCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceec
Confidence 46778899999999988432221 111233333333221 1689887 8999999999999999999988
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
+
T Consensus 252 G 252 (351)
T 2c6q_A 252 G 252 (351)
T ss_dssp S
T ss_pred c
Confidence 6
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=88.59 E-value=3 Score=40.50 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=62.9
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCce-EEEcccC---CH----------------HHHHHHHHcC
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELD-VIGGNVV---TM----------------YQAQNLIEAG 310 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~-Vi~g~V~---t~----------------e~a~~l~~aG 310 (505)
..++.+.+.|+|++.++...|.. .+...++.. +.+..-| +++=.+. +. +.|+.+.++|
T Consensus 94 ~av~~~a~lGaD~vTVHa~~G~~-~m~aa~e~a-~~~~~~~~llaVtvLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G 171 (303)
T 3ru6_A 94 DACEEVSKLGVDMINIHASAGKI-AIQEVMTRL-SKFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENG 171 (303)
T ss_dssp HHHHHHHTTTCSEEEEEGGGCHH-HHHHHHHHH-TTSSSCCEEEEECSCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCEEEEeccCCHH-HHHHHHHHH-HhcCCCceEEEEEEecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 34566777899999998866631 222222222 2221212 2221221 11 2345566789
Q ss_pred CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHH----------HHHHHHHhCCCEEEec
Q 010640 311 VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSG----------HIVKALVLGASTVMMG 380 (505)
Q Consensus 311 ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~----------di~kal~lGA~~V~~G 380 (505)
+++++.+ .. . +..+++.+. .-.++..+||+-.. .+..++.+|||.+.+|
T Consensus 172 ~dGvV~s--------~~--------E---~~~IR~~~~--~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvG 230 (303)
T 3ru6_A 172 LDGMVCS--------VF--------E---SKKIKEHTS--SNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVG 230 (303)
T ss_dssp CSEEECC--------TT--------T---HHHHHHHSC--TTSEEEECCCCTTC--------CCSHHHHHHTTCSEEEEC
T ss_pred CCEEEEC--------HH--------H---HHHHHHhCC--CccEEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEC
Confidence 9887432 11 1 123334332 23577788998332 4667889999999999
Q ss_pred ccccCC
Q 010640 381 SFLAGS 386 (505)
Q Consensus 381 ~~f~~~ 386 (505)
+++..+
T Consensus 231 r~I~~a 236 (303)
T 3ru6_A 231 RPIYKN 236 (303)
T ss_dssp HHHHTS
T ss_pred hHHhCC
Confidence 987653
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=2.4 Score=39.80 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=64.6
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh--CC-Cce-EEEcccCCHHHHHHH-HHc----------------
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT--YP-ELD-VIGGNVVTMYQAQNL-IEA---------------- 309 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~--~~-~~~-Vi~g~V~t~e~a~~l-~~a---------------- 309 (505)
..++.+.+.|+|++.+|...|.. .....++.+++. +. ..+ +++=+..|......+ .+.
T Consensus 73 ~~~~~~~~~Gad~vTvH~~~g~~-~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~ 151 (246)
T 2yyu_A 73 QAMKGLARVGADLVNVHAAGGRR-MMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAAL 151 (246)
T ss_dssp HHHHHHHHTTCSEEEEEGGGCHH-HHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCCHH-HHHHHHHHHHhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 36778889999999998876632 234566666662 21 123 332233222112222 222
Q ss_pred ----CCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH-H---------HHHHHHHhCCC
Q 010640 310 ----GVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS-G---------HIVKALVLGAS 375 (505)
Q Consensus 310 ----Gad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~-~---------di~kal~lGA~ 375 (505)
|.++++. +... +..+++.+. ..+++.+|||.-. . .+..++.+||+
T Consensus 152 ~~~~G~~g~V~------------------~~~e-i~~lr~~~~--~~~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad 210 (246)
T 2yyu_A 152 AKESGLDGVVC------------------SANE-AAFIKERCG--ASFLAVTPGIRFADDAAHDQVRVVTPRKARALGSD 210 (246)
T ss_dssp HHHHTCCEEEC------------------CHHH-HHHHHHHHC--TTSEEEECCCCCCC-------CCCCHHHHHHHTCS
T ss_pred HHHhCCCEEEe------------------CHHH-HHHHHHhcC--CCCEEEeCCcCCCCCCcccccccCCHHHHHHcCCC
Confidence 3332211 1222 445555443 2469999999843 2 37788899999
Q ss_pred EEEecccccC
Q 010640 376 TVMMGSFLAG 385 (505)
Q Consensus 376 ~V~~G~~f~~ 385 (505)
.+.+|+.+..
T Consensus 211 ~iVvGr~I~~ 220 (246)
T 2yyu_A 211 YIVIGRSLTR 220 (246)
T ss_dssp EEEECHHHHT
T ss_pred EEEECHhhcC
Confidence 9999998754
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.57 E-value=2.6 Score=41.27 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 33 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 112 (318)
T 3qfe_A 33 SQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLV 112 (318)
T ss_dssp HHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 46677889999999999987766532 23344444444433 36899986432 355678888899999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 113 ~ 113 (318)
T 3qfe_A 113 L 113 (318)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=88.51 E-value=0.27 Score=46.50 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCcEEecCCCCCHH----------HHHHHHHhCCCEEEecccccC
Q 010640 340 VYKVSSIAAQSGVPVIADGGISNSG----------HIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 340 l~~v~~~~~~~~ipvIa~GGI~~~~----------di~kal~lGA~~V~~G~~f~~ 385 (505)
+..+++.+. +.+++.+|||.-.. .+.+++.+||+.+.+|+.+..
T Consensus 173 i~~lr~~~~--~~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~ 226 (245)
T 1eix_A 173 AVRFKQVFG--QEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQ 226 (245)
T ss_dssp HHHHHHHHC--SSSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred HHHHHHhcC--CCCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcC
Confidence 444555443 35899999998532 377788999999999998754
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.49 E-value=0.75 Score=42.94 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc----hhHHHHHHHHHHhCCCce----EEEcccCCHHHHHHHHHcCCCEEEEcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS----SFQIEMIKYAKKTYPELD----VIGGNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~----~~~~~~i~~l~~~~~~~~----Vi~g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
....+.++.+.+.|+++++++...|+. ..-.+.++.+|+.+ +.+ +++-+. ......+.++|+|++.+..
T Consensus 17 ~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~-~~~~~vhlmv~dp--~~~i~~~~~aGadgv~vh~ 93 (230)
T 1tqj_A 17 SRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT-KKTLDVHLMIVEP--EKYVEDFAKAGADIISVHV 93 (230)
T ss_dssp GGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGC-CSEEEEEEESSSG--GGTHHHHHHHTCSEEEEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhc-CCcEEEEEEccCH--HHHHHHHHHcCCCEEEECc
Confidence 346678888889999999998755431 12237788888765 333 444221 2246778889999997742
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
... .. .. ...+.+.+++.++-+..+=.-.|+.+..+++..++|.|.+++.+-.
T Consensus 94 e~~-------~~----~~---~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg 146 (230)
T 1tqj_A 94 EHN-------AS----PH---LHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPG 146 (230)
T ss_dssp STT-------TC----TT---HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC-
T ss_pred ccc-------cc----hh---HHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccc
Confidence 100 00 11 1123344445565555544557888888888889999999988743
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=88.48 E-value=2.1 Score=41.93 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=58.5
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccC-CcceeecccccccC-cChHHHHHHHHHHHhhc-CCcEEecC--CCCCH
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMG-SGSICTTQEVCAVG-RGQATAVYKVSSIAAQS-GVPVIADG--GISNS 363 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g-~g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~-~ipvIa~G--GI~~~ 363 (505)
+-++..-++.+.-.|+.+.++|.|+|.++.. -+....+ ..+.+ ++.-+.+..++..++.. ++|||+|. |-.++
T Consensus 38 ~~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG--~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~ 115 (318)
T 1zlp_A 38 HGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLG--LPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGP 115 (318)
T ss_dssp SSSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHC--CCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSH
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcC--CCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCH
Confidence 3456566889999999999999999998731 1111111 11112 33334455566666667 79999996 54465
Q ss_pred HHH----HHHHHhCCCEEEec
Q 010640 364 GHI----VKALVLGASTVMMG 380 (505)
Q Consensus 364 ~di----~kal~lGA~~V~~G 380 (505)
.++ .+.+.+||++|.+=
T Consensus 116 ~~v~~tv~~l~~aGaagv~iE 136 (318)
T 1zlp_A 116 LNVQRFIRELISAGAKGVFLE 136 (318)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEC
Confidence 544 34567999999773
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=88.46 E-value=6.9 Score=39.05 Aligned_cols=118 Identities=8% Similarity=0.097 Sum_probs=78.9
Q ss_pred CccHHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHHHH----cCCCEEEEc
Q 010640 246 RESDKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNLIE----AGVDGLRVG 317 (505)
Q Consensus 246 ~~~~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l~~----aGad~I~v~ 317 (505)
+++..+.++.+++. |...+-+..........++.++.+|+.+ ++.++++- .--+.++|..+.+ .|++.|.-
T Consensus 152 ~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEq- 230 (372)
T 3tj4_A 152 LEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFEE- 230 (372)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEES-
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEEC-
Confidence 34456677778888 9999988765434456788899999988 67888773 2236666654433 44444421
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
.+. ...+..+ ++..+..++||.+++.+.+..|+.+++..| +|.|++-
T Consensus 231 ----------P~~---~~d~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k 278 (372)
T 3tj4_A 231 ----------PLW---YDDVTSH---ARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPD 278 (372)
T ss_dssp ----------CSC---TTCHHHH---HHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred ----------CCC---chhHHHH---HHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeC
Confidence 111 0123333 333445689999999999999999999988 6877764
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.43 E-value=1.1 Score=43.22 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC--CceEE--Ec---ccC----CHHHHHHHHHcCCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP--ELDVI--GG---NVV----TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~--~~~Vi--~g---~V~----t~e~a~~l~~aGad~I~ 315 (505)
++..+.++.+.+.|+..+++.. .++ +..++.+. +++|. +| +.. -..+++.+++.|||.|+
T Consensus 74 ~dI~~lc~eA~~~g~aaVCV~P------~~V---~~a~~~L~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEID 144 (288)
T 3oa3_A 74 SQIDVLCAEAKEYGFATVCVRP------DYV---SRAVQYLQGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELD 144 (288)
T ss_dssp HHHHHHHHHHHHHTCSEEEECG------GGH---HHHHHHTTTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHhcCCcEEEECH------HHH---HHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 3455667777778999999832 223 33334432 33432 22 111 23478889999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH----HHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK----ALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k----al~lGA~~V~~G~~f~ 384 (505)
+-+.-| ....+-.--...-+..++++|...-+.+|..-|..+..++.+ |..+|||+|--.|-|.
T Consensus 145 mVINig-----~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~ 212 (288)
T 3oa3_A 145 MVMNYP-----WLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFN 212 (288)
T ss_dssp EECCHH-----HHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS
T ss_pred EEeehh-----hhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC
Confidence 752111 111110011233444555555433367888888889988555 4568999999888774
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=88.39 E-value=2.9 Score=40.36 Aligned_cols=113 Identities=14% Similarity=0.188 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 24 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 103 (292)
T 3daq_A 24 ALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIML 103 (292)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEE
Confidence 36677888999999999987765532 23334444444433 36899986432 345667888899999977
Q ss_pred ccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
.. +.+. .|+-. .+......++..++||+.= .|+.=..+...-|+
T Consensus 104 ~~----P~y~-------~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 153 (292)
T 3daq_A 104 IT----PYYN-------KTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILS 153 (292)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred CC----CCCC-------CCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHh
Confidence 41 1111 12222 2223344455557888754 25544444444444
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=88.38 E-value=8.9 Score=36.53 Aligned_cols=67 Identities=7% Similarity=0.050 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCC---chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHc--CCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGN---SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEA--GVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~---~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~a--Gad~I~ 315 (505)
+...++++.+++.|+++|-|...... ...+...++.+++.+ ++|+.+ .-..++.++.+.++ |++.|.
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~-~~pisI-DT~~~~v~~aal~a~~Ga~iIN 105 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVV-DLPCCL-DSTNPDAIEAGLKVHRGHAMIN 105 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHC-CCCEEE-ECSCHHHHHHHHHHCCSCCEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhC-CCeEEE-eCCCHHHHHHHHHhCCCCCEEE
Confidence 45677888899999999998764322 245677788888776 788877 45688999999999 999885
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=1.9 Score=42.78 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC-------CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ-------GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~-------g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
+..+.++.|.+. +|++.+.... ......++.++.+++.+ ++||++ |.+.+.++|..+++.| +|+|.++
T Consensus 231 ~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iG 307 (343)
T 3kru_A 231 MMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRC-NIKTSAVGLITTQELAEEILSNERADLVALG 307 (343)
T ss_dssp HHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-TCEEEEESSCCCHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhc-CcccceeeeeeHHHHHHHHHhchhhHHHHHH
Confidence 456677788888 9999884211 01123567788888887 788876 7788999999999998 9999765
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=3.3 Score=39.99 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=47.7
Q ss_pred cHHHHHHHHHH-cCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEE
Q 010640 248 SDKERLEHLVK-AGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 248 ~~~e~~~~lie-aGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~ 315 (505)
...+.++.+++ .|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.
T Consensus 25 ~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavl 104 (293)
T 1f6k_A 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLS 104 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 36678889999 999999887665532 23344444444433 36899986432 34566778889999997
Q ss_pred Ec
Q 010640 316 VG 317 (505)
Q Consensus 316 v~ 317 (505)
+.
T Consensus 105 v~ 106 (293)
T 1f6k_A 105 AV 106 (293)
T ss_dssp EE
T ss_pred EC
Confidence 74
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=88.21 E-value=6.2 Score=39.86 Aligned_cols=115 Identities=11% Similarity=0.174 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHHc-CccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc--ccCCHHHHHH----HHHcCCCEEEEccC
Q 010640 247 ESDKERLEHLVKA-GVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG--NVVTMYQAQN----LIEAGVDGLRVGMG 319 (505)
Q Consensus 247 ~~~~e~~~~liea-Gad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g--~V~t~e~a~~----l~~aGad~I~v~~g 319 (505)
++..+.++.+++. |...+-+... ......++.++.+|+.++++++++- .--+.++|.. +.+.|++.|.-.
T Consensus 170 e~~~~~a~~~~~~~G~~~~K~KvG-~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iEqP-- 246 (398)
T 4dye_A 170 KAMAEHAVRVVEEGGFDAVKLKGT-TDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLEDP-- 246 (398)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECC-SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEECC--
T ss_pred HHHHHHHHHHHHhcCCCEEEEecC-CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEEcCC--
Confidence 4456677778888 9999988664 3345668888999998888888883 2236666644 444677776311
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
.|.+..+ ++..+..++||.++.-+.+..|+.+++..| +|.+++--
T Consensus 247 --------------~~d~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~ 292 (398)
T 4dye_A 247 --------------CVGIEGM---AQVKAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDV 292 (398)
T ss_dssp --------------SSHHHHH---HHHHHHCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECH
T ss_pred --------------CCCHHHH---HHHHhhCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCc
Confidence 1233333 444455789999999999999999999987 78887653
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=88.19 E-value=5.1 Score=40.09 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=79.1
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc-cc-CCH----HHHHHHHHcCCCEEEEcc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG-NV-VTM----YQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g-~V-~t~----e~a~~l~~aGad~I~v~~ 318 (505)
++...+.++.+++.|...+-+..........++.++.+|+.+ +++++++- |- -+. +-++.+.+.|++.|.-.
T Consensus 147 ~~~~~~~a~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEqP- 225 (377)
T 3my9_A 147 FDADLERMRAMVPAGHTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFIEQP- 225 (377)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCEECC-
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCCCcHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEEECC-
Confidence 344456666777789999888665433356678888899887 57888773 11 122 34566667788877421
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
+. ......+. +..+..++||.+++-+.+..|+.+++..| +|.|++-
T Consensus 226 ----------~~---~~d~~~~~---~l~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k 272 (377)
T 3my9_A 226 ----------VP---RRHLDAMA---GFAAALDTPILADESCFDAVDLMEVVRRQAADAISVK 272 (377)
T ss_dssp ----------SC---TTCHHHHH---HHHHHCSSCEEESTTCSSHHHHHHHHHHTCCSEEECC
T ss_pred ----------CC---ccCHHHHH---HHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEec
Confidence 10 01233333 33445689999999999999999999887 7888764
|
| >1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A | Back alignment and structure |
|---|
Probab=88.11 E-value=3.4 Score=43.02 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHH---HHHHHcCCCEEEEccCCccee
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQA---QNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a---~~l~~aGad~I~v~~g~g~~~ 324 (505)
...+.+...++.|+|.+.+..-.. ........+.+.+.-..+.++++ +-+.+.. ....++ +|+|.++-|-
T Consensus 194 ~D~~DI~~~l~~g~d~I~lpfV~s-aeDv~~~~~~l~~~~~~i~Iiak-IEt~eav~nldeI~~~-~DgImvgrgD---- 266 (500)
T 1a3w_A 194 KDKEDLRFGVKNGVHMVFASFIRT-ANDVLTIREVLGEQGKDVKIIVK-IENQQGVNNFDEILKV-TDGVMVARGD---- 266 (500)
T ss_dssp HHHHHHHHHHHHTCSEEEECSCCS-HHHHHHHHHHHHHHHTTSEEEEE-ECSSHHHHSHHHHHHH-SSEEEECHHH----
T ss_pred hHHHHHHHHHHcCCCEEEECCCCC-HHHHHHHHHHHHhcCCCcEEEEE-ECChHHHHhHHHHHHh-CCEEEECchH----
Confidence 456667888899999998833211 22233333333322125677774 3333332 333334 7999886311
Q ss_pred ecccccccCcCh-HHHHHHHHHHHhhcCCcEEec---------CCCCCHH---HHHHHHHhCCCEEEecc
Q 010640 325 TTQEVCAVGRGQ-ATAVYKVSSIAAQSGVPVIAD---------GGISNSG---HIVKALVLGASTVMMGS 381 (505)
Q Consensus 325 ~~~~~~g~g~p~-~~~l~~v~~~~~~~~ipvIa~---------GGI~~~~---di~kal~lGA~~V~~G~ 381 (505)
-....|.+. ..+...+...|+..++|+|.+ ...-+.. |++.++..|+|+||++.
T Consensus 267 ---Lgvelg~~~v~~aqk~ii~aaraaGkpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~ 333 (500)
T 1a3w_A 267 ---LGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSG 333 (500)
T ss_dssp ---HHHHTTGGGHHHHHHHHHHHHHHHTCCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBST
T ss_pred ---hhhhcCcHHHHHHHHHHHHHHHhcCCCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecc
Confidence 001112232 234455667777789999953 3433422 99999999999999974
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.06 E-value=2.6 Score=41.22 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
.....++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 46 ~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv 125 (315)
T 3na8_A 46 ALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMV 125 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46677888999999999887665532 23344454444433 36899886332 355677888999999977
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 126 ~ 126 (315)
T 3na8_A 126 L 126 (315)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=88.05 E-value=3.1 Score=40.71 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 44 ~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv 123 (315)
T 3si9_A 44 AFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLV 123 (315)
T ss_dssp HHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46677888999999999887766632 23344444444433 36899886332 345677888999999976
Q ss_pred c
Q 010640 317 G 317 (505)
Q Consensus 317 ~ 317 (505)
.
T Consensus 124 ~ 124 (315)
T 3si9_A 124 V 124 (315)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=88.01 E-value=3 Score=41.19 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
...+++..|.++|+|++-+.... ....+.++.+++.. ++|+++---.++..|..+.++|+|.+.+- +|++.
T Consensus 47 atv~Qi~~l~~aG~diVRvavp~---~~~a~al~~I~~~~-~vPlvaDiHf~~~lal~a~e~G~dklRIN--PGNig--- 117 (366)
T 3noy_A 47 ATLNQIKRLYEAGCEIVRVAVPH---KEDVEALEEIVKKS-PMPVIADIHFAPSYAFLSMEKGVHGIRIN--PGNIG--- 117 (366)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCS---HHHHHHHHHHHHHC-SSCEEEECCSCHHHHHHHHHTTCSEEEEC--HHHHS---
T ss_pred HHHHHHHHHHHcCCCEEEeCCCC---hHHHHHHHHHHhcC-CCCEEEeCCCCHHHHHHHHHhCCCeEEEC--CcccC---
Confidence 46678889999999999875542 34567888888887 79998844489999999999999998763 22221
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEe
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIA 356 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa 356 (505)
.-+-+.++.+.+++.++||-.
T Consensus 118 --------~~~~~~~vv~~ak~~~~piRI 138 (366)
T 3noy_A 118 --------KEEIVREIVEEAKRRGVAVRI 138 (366)
T ss_dssp --------CHHHHHHHHHHHHHHTCEEEE
T ss_pred --------chhHHHHHHHHHHHcCCCEEE
Confidence 123345666777778888766
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=87.94 E-value=4.3 Score=41.49 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHHHHcCCCEEEEccC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNLIEAGVDGLRVGMG 319 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l~~aGad~I~v~~g 319 (505)
+...+.+..+.++|.+.+-+...+ .....++.++.+|+.+ ++.++.+. .--+.+++ +.+.+.|++.|.-..
T Consensus 187 e~~~~~a~~~~~~Gf~~vKik~g~-~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~iEqP~- 264 (428)
T 3bjs_A 187 ESLAEEAQEYIARGYKALKLRIGD-AARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWLEEPF- 264 (428)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCEECCS-
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEECCC-
Confidence 556677788888999999887654 2345678888888876 57888773 12255554 556667888774211
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcC-CcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSG-VPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
. ......+ ++..+..+ +||++++.+.+..++.+++..| +|+|++-
T Consensus 265 ----------~---~~d~~~~---~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 265 ----------A---CNDFASY---REVAKITPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp ----------C---TTCHHHH---HHHTTTCSSSCEEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred ----------C---ccCHHHH---HHHHHhCCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 0 0122223 34445567 9999999999999999999888 6777764
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=87.92 E-value=4.4 Score=38.67 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcC-CcEEe
Q 010640 278 EMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG-VPVIA 356 (505)
Q Consensus 278 ~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~-ipvIa 356 (505)
..++.+++. +-++..-++.+.-.|+.+.++|+|+|.++-..+....+..-+ ..++.-..+..++..++..+ .+|++
T Consensus 7 ~~lr~~k~~--g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt-~~vTldemi~h~~aV~r~~~~~~vva 83 (275)
T 1o66_A 7 NTLQKMKAA--GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKST-LPVSLRDMCYHTECVARGAKNAMIVS 83 (275)
T ss_dssp HHHHHHHHH--TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSS-TTCCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHHHhC--CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence 344455554 446656688999999999999999997753222221111111 11233334445556666555 56888
Q ss_pred c---CCC-CCHHHHH----HHHHhCCCEEEe
Q 010640 357 D---GGI-SNSGHIV----KALVLGASTVMM 379 (505)
Q Consensus 357 ~---GGI-~~~~di~----kal~lGA~~V~~ 379 (505)
| |+- .++.+.+ +.+..||++|.+
T Consensus 84 D~pfgsy~~s~~~a~~na~rl~kaGa~aVkl 114 (275)
T 1o66_A 84 DLPFGAYQQSKEQAFAAAAELMAAGAHMVKL 114 (275)
T ss_dssp ECCTTSSSSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred ECCCCCccCCHHHHHHHHHHHHHcCCcEEEE
Confidence 8 444 3677666 577899999977
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=87.90 E-value=2.6 Score=40.82 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 22 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (297)
T 2rfg_A 22 ALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLC 101 (297)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 36677888999999999886665522 23344444444433 25888886332 345667788899999977
Q ss_pred ccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
.. +.+. .|+-. .+.-....++..++|||.= .|+.=..+..+-|+
T Consensus 102 ~~----P~y~-------~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (297)
T 2rfg_A 102 VA----GYYN-------RPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLA 151 (297)
T ss_dssp CC----CTTT-------CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred cC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHH
Confidence 41 1111 12222 2333344455567888763 25543344444443
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=87.75 E-value=1.2 Score=44.22 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCC-CceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 277 IEMIKYAKKTYP-ELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 277 ~~~i~~l~~~~~-~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
++.+..+++.++ ++||++ |+|.+.+++.+++.+|||++.++
T Consensus 262 ~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~ig 304 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIG 304 (345)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEC
Confidence 678888888875 688876 89999999999999999999875
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=87.71 E-value=2.3 Score=39.52 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=44.2
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.|..++-++. .|.. ...+.++++++...++|+++ |++.++++++.+. .|||++++|
T Consensus 152 ~g~~~VYld~-sG~~-~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVG 208 (228)
T 3vzx_A 152 LQLPIFYLEY-SGVL-GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVG 208 (228)
T ss_dssp TTCSEEEEEC-TTSC-CCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEEC
T ss_pred cCCCEEEecC-CCCc-CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEC
Confidence 4678887777 4433 25788899988864588877 5889999999988 799999986
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=87.55 E-value=2 Score=41.49 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=81.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC-C--c--hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG-N--S--SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g-~--~--~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
.++..+.++.|.+.|++.|++..... . + ....+.++.+++. +++++.+- +.+.+..+.+.++|++.|.+...+
T Consensus 25 ~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~-~~~~v~~l-~~n~~~i~~a~~~G~~~V~i~~~~ 102 (295)
T 1ydn_A 25 TADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRA-DGVRYSVL-VPNMKGYEAAAAAHADEIAVFISA 102 (295)
T ss_dssp HHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCC-SSSEEEEE-CSSHHHHHHHHHTTCSEEEEEEES
T ss_pred HHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhC-CCCEEEEE-eCCHHHHHHHHHCCCCEEEEEEec
Confidence 34567788889899999998864211 1 1 1355666666543 46776442 367899999999999998775311
Q ss_pred cceeecccccccCcC---hHHHHHHHHHHHhhcCCcEEe---------cCCCCCHHHHHHHH----HhCCCEEEecc
Q 010640 321 GSICTTQEVCAVGRG---QATAVYKVSSIAAQSGVPVIA---------DGGISNSGHIVKAL----VLGASTVMMGS 381 (505)
Q Consensus 321 g~~~~~~~~~g~g~p---~~~~l~~v~~~~~~~~ipvIa---------~GGI~~~~di~kal----~lGA~~V~~G~ 381 (505)
+. .........+ .+..+.++.+++++.+++|-+ +++-.++..+.+.. .+||+.+.++.
T Consensus 103 -S~--~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~D 176 (295)
T 1ydn_A 103 -SE--GFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGD 176 (295)
T ss_dssp -CH--HHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred -CH--HHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecC
Confidence 10 0111111222 234445556777777877741 13566777776655 69999998874
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=87.54 E-value=2.7 Score=40.60 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (292)
T 2ojp_A 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT 102 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 46678888999999999987766532 23344444444433 36899886432 244556667799999976
Q ss_pred ccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
.. +.+. .|+-. .+......++..++||+.= .|+.=..+..+-|+
T Consensus 103 ~~----P~y~-------~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 152 (292)
T 2ojp_A 103 VT----PYYN-------RPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLA 152 (292)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHH
T ss_pred CC----CCCC-------CCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHH
Confidence 41 1111 12223 2333345555567888763 25543444444443
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=87.43 E-value=8.8 Score=38.92 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=80.0
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC------C------chhHHHHHHHHHHhC-CCceEEEc--ccCCHHHH----HHH
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG------N------SSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQA----QNL 306 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g------~------~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a----~~l 306 (505)
+++..+.++.+.+.|...+-+..... . ....++.++.+|+.+ ++.++++- .--+.++| +.+
T Consensus 145 ~e~~~~~a~~~~~~G~~~iKlK~g~~~~~~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L 224 (412)
T 4e4u_A 145 PDLAAECAAENVKLGFTAVKFDPAGPYTAYSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRL 224 (412)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCccccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 44566677788889999998854321 0 234577888888887 57888883 12256655 445
Q ss_pred HHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 307 IEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 307 ~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
.+.|++.|.-.. . ...+..+ ++..+..++||++++.+.+..++.+++..| +|.|++--
T Consensus 225 ~~~~i~~iEeP~-----------~---~~d~~~~---~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~ 283 (412)
T 4e4u_A 225 EKYDPLWFEEPV-----------P---PGQEEAI---AQVAKHTSIPIATGERLTTKYEFHKLLQAGGASILQLNV 283 (412)
T ss_dssp GGGCCSEEECCS-----------C---SSCHHHH---HHHHHTCSSCEEECTTCCHHHHHHHHHHTTCCSEECCCT
T ss_pred hhcCCcEEECCC-----------C---hhhHHHH---HHHHhhCCCCEEecCccCCHHHHHHHHHcCCCCEEEeCc
Confidence 567888884221 0 0123333 334445689999999999999999999988 78887753
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=87.43 E-value=4.1 Score=41.20 Aligned_cols=115 Identities=9% Similarity=0.064 Sum_probs=78.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc-----ccCCHHHHHHHHHcCCCEEEEccC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG-----NVVTMYQAQNLIEAGVDGLRVGMG 319 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g-----~V~t~e~a~~l~~aGad~I~v~~g 319 (505)
++...+.++.+++.|...+-+... ....++.++.+|+.+ +++++++- +..+.+.++.+.+.|++.|.-.
T Consensus 164 ~e~~~~~a~~~~~~G~~~iKlKv~---~~~d~~~v~avR~a~G~~~~L~vDaN~~w~~~~~~~~~~l~~~~i~~iEqP-- 238 (400)
T 3mwc_A 164 IETLIHQVEESLQEGYRRIKIKIK---PGWDVEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCLFHEQP-- 238 (400)
T ss_dssp HHHHHHHHHHHHHHTCSCEEEECB---TTBSHHHHHHHHHHHCTTSCEEEECTTCCCGGGHHHHHHHGGGCCSCEESC--
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeC---cchHHHHHHHHHHhcCCCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEeCC--
Confidence 344566777788889888877653 234578888899987 67888873 2223455666667788877311
Q ss_pred CcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 320 SGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 320 ~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
+. ......+. +..+..++||.++.-+.+..|+.+++..| +|.|++-
T Consensus 239 ---------~~---~~d~~~~~---~l~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k 285 (400)
T 3mwc_A 239 ---------LH---YEALLDLK---ELGERIETPICLDESLISSRVAEFVAKLGISNIWNIK 285 (400)
T ss_dssp ---------SC---TTCHHHHH---HHHHHSSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred ---------CC---hhhHHHHH---HHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCCEEEEc
Confidence 10 01233333 33445679999999999999999999987 7888874
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.35 E-value=3.4 Score=36.08 Aligned_cols=68 Identities=12% Similarity=0.196 Sum_probs=51.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
...+.++.+.+.+++++.+....+ +...+.+.++.+++.- ++++|++|+....++...+.+.|+|++.
T Consensus 57 p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~ 126 (161)
T 2yxb_A 57 TPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIF 126 (161)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEE
Confidence 356778888889999998866543 3356677778888864 3689999887766666678899999763
|
| >3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* | Back alignment and structure |
|---|
Probab=87.05 E-value=4.4 Score=42.09 Aligned_cols=123 Identities=22% Similarity=0.248 Sum_probs=71.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHH-HHHhCCCceEEEcccCCHHHHH---HHHHcCCCEEEEccCCcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKY-AKKTYPELDVIGGNVVTMYQAQ---NLIEAGVDGLRVGMGSGS 322 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~-l~~~~~~~~Vi~g~V~t~e~a~---~l~~aGad~I~v~~g~g~ 322 (505)
+.+.+.+...++.|+|++.+ ++=.+...+..++. +.+.-.++.++++ +-+.+... ..+++ +|+|.++-|-=+
T Consensus 192 ekD~~dl~~~~~~~vD~i~~--sfVr~a~dv~~~r~~l~~~~~~i~IiaK-IE~~eav~nldeIl~~-sDgImVaRGDLg 267 (499)
T 3hqn_D 192 AKDRVDLQFGVEQGVDMIFA--SFIRSAEQVGDVRKALGPKGRDIMIICK-IENHQGVQNIDSIIEE-SDGIMVARGDLG 267 (499)
T ss_dssp HHHHHHHHHHHHTTCSEEEE--TTCCSHHHHHHHHHHHCGGGTTSEEEEE-ECSHHHHHTHHHHHHH-SSEEEEEHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEe--cCCCCHHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHhHHHHHHh-CCcEEEcccccc
Confidence 34666778888999999988 44333223333332 2222135677774 44544433 33334 799988632101
Q ss_pred eeecccccccCcCh-HHHHHHHHHHHhhcCCcEEecC---------CCCCH---HHHHHHHHhCCCEEEec
Q 010640 323 ICTTQEVCAVGRGQ-ATAVYKVSSIAAQSGVPVIADG---------GISNS---GHIVKALVLGASTVMMG 380 (505)
Q Consensus 323 ~~~~~~~~g~g~p~-~~~l~~v~~~~~~~~ipvIa~G---------GI~~~---~di~kal~lGA~~V~~G 380 (505)
... +.+. +..-..+...|+..++|+|.+- ..-|. .|++.|+.-|||+||+.
T Consensus 268 vEi-------~~e~vp~~Qk~iI~~c~~agkpVi~ATQmLeSMi~~p~PTRAEvsDVanaV~dG~DavMLS 331 (499)
T 3hqn_D 268 VEI-------PAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLS 331 (499)
T ss_dssp HHS-------CHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEES
T ss_pred CcC-------CHHHHHHHHHHHHHHHHHcCCCeEEeehhHHHhccCCCccHHHHHHHHHHHHcCCcEEEEe
Confidence 111 1111 2233445566777789999743 33333 58999999999999995
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=87.04 E-value=3.4 Score=38.38 Aligned_cols=69 Identities=14% Similarity=0.262 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcC-ccEEEEeC---CCC---CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAG-VNVVVLDS---SQG---NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaG-ad~I~i~~---~~g---~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..+.++.+++.| +|.+.+-+ .++ .....++.++++++..++.++.+-+-.+.+.+..+.++|+|.+++|
T Consensus 126 p~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 126 DVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp CGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred cHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 345666777765 99985533 222 2245678888888886667776644456889999999999999886
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=86.92 E-value=3.4 Score=39.03 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCCCch----hHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQGNSS----FQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g~~~----~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+.+-.++-..+ ..|... ...+.++++|+.. +.|+++| ++.++++++.+.+ ++|+++||
T Consensus 153 ~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~a~~~~~-~ADGVIVG 227 (252)
T 3tha_A 153 PKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT-NLPIFVGFGIQNNQDVKRMRK-VADGVIVG 227 (252)
T ss_dssp CHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHTT-TSSEEEEC
T ss_pred cHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc-CCcEEEEcCcCCHHHHHHHHh-cCCEEEEC
Confidence 35778877777655553332 234332 3466788888875 7899875 7889999998866 69999996
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=86.87 E-value=13 Score=35.65 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHcCccEEEEeC-CC--CC-----c---hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDS-SQ--GN-----S---SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~-~~--g~-----~---~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
+...++++.+++.|+|+|-|.. +. |. . ..+...++.+++.+ ++||.+ .-..++.++.+.++|++.|.
T Consensus 38 ~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSI-DT~~~~va~aAl~aGa~iIN 115 (282)
T 1aj0_A 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISV-DTSKPEVIRESAKVGAHIIN 115 (282)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEE-ECCCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEE-eCCCHHHHHHHHHcCCCEEE
Confidence 4567788899999999999976 21 21 1 23566677777766 788866 55789999999999999884
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=86.87 E-value=3.8 Score=39.23 Aligned_cols=105 Identities=18% Similarity=0.255 Sum_probs=71.1
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC---------CCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ---------GNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~---------g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+...+.++.+.++|++++-+..-. |.....+..+++.++.+ ++|++. ++.+.+.+..+.+. +|++.++
T Consensus 52 e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~~~~~~-Gl~~~t-e~~d~~~~~~l~~~-vd~~kIg 128 (276)
T 1vs1_A 52 EQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRRAGDEA-GLPVVT-EVLDPRHVETVSRY-ADMLQIG 128 (276)
T ss_dssp HHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHH-TCCEEE-ECCCGGGHHHHHHH-CSEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHHHHHHc-CCcEEE-ecCCHHHHHHHHHh-CCeEEEC
Confidence 346667788888999998764311 11233455555555554 788866 89999999999999 9999886
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC-CHHHHHHHHH
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS-NSGHIVKALV 371 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~-~~~di~kal~ 371 (505)
. +... ....+.++ ...+.||+.+=|.. +..++..|..
T Consensus 129 s--------~~~~-----n~~ll~~~----a~~~kPV~lk~G~~~t~~ei~~Ave 166 (276)
T 1vs1_A 129 A--------RNMQ-----NFPLLREV----GRSGKPVLLKRGFGNTVEELLAAAE 166 (276)
T ss_dssp G--------GGTT-----CHHHHHHH----HHHTCCEEEECCTTCCHHHHHHHHH
T ss_pred c--------cccc-----CHHHHHHH----HccCCeEEEcCCCCCCHHHHHHHHH
Confidence 2 1111 11223232 24689999999997 9999988875
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=86.83 E-value=1.2 Score=44.67 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
..+.++.|.+.|+|++.+..... .. +.++.+++.+ ++||++ |.+ +.+.+..+++.| +|+|.++
T Consensus 252 ~~~la~~l~~~Gvd~i~v~~~~~-~~---~~~~~ik~~~-~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iG 316 (361)
T 3gka_A 252 FGHVARELGRRRIAFLFARESFG-GD---AIGQQLKAAF-GGPFIVNENF-TLDSAQAALDAGQADAVAWG 316 (361)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCS-TT---CCHHHHHHHH-CSCEEEESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHHcCCCEEEECCCCC-CH---HHHHHHHHHc-CCCEEEeCCC-CHHHHHHHHHcCCccEEEEC
Confidence 56677888889999999865431 11 4456777776 677766 666 999999999988 9999765
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=86.82 E-value=1.2 Score=44.63 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
..+.++.|.+.|+|++.++..... . +.++.+++.+ ++||++ |.+ +.+.+..+++.| +|+|.++
T Consensus 244 ~~~la~~l~~~Gvd~i~v~~~~~~-~---~~~~~ik~~~-~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iG 308 (362)
T 4ab4_A 244 FTYVARELGKRGIAFICSREREAD-D---SIGPLIKEAF-GGPYIVNERF-DKASANAALASGKADAVAFG 308 (362)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCT-T---CCHHHHHHHH-CSCEEEESSC-CHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHHhCCCEEEECCCCCC-H---HHHHHHHHHC-CCCEEEeCCC-CHHHHHHHHHcCCccEEEEC
Confidence 456778888899999998654311 1 3456777776 678766 666 999999999988 9999765
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=2.4 Score=40.55 Aligned_cols=65 Identities=25% Similarity=0.265 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCccEEEEeCC---CCC----chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSS---QGN----SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~---~g~----~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.++++.+.+.+..++.+.+. .|. .....++++.+++.. ++||++| ++.++++++.+ .|+|+++||
T Consensus 157 ~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~--~~ADgVIVG 229 (271)
T 1ujp_A 157 DARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp HHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh--cCCCEEEEC
Confidence 45666666655444433221 121 223357888888876 7899875 77789999997 999999996
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=86.80 E-value=5.9 Score=38.61 Aligned_cols=115 Identities=15% Similarity=0.146 Sum_probs=67.8
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCC-CE
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGV-DG 313 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGa-d~ 313 (505)
.+...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+ |+
T Consensus 27 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~da 106 (311)
T 3h5d_A 27 FDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAA 106 (311)
T ss_dssp TTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcE
Confidence 3457788899999999999987766632 33445555555554 36899986432 3455677888897 99
Q ss_pred EEEccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 314 LRVGMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 314 I~v~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
+.+.. +.+. .|+-. .+......++..++||+.= -|+.=..+....|+
T Consensus 107 vlv~~----P~y~-------~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 159 (311)
T 3h5d_A 107 GLAIV----PYYN-------KPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLA 159 (311)
T ss_dssp EEEEC----CCSS-------CCCHHHHHHHHHHHHHSCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred EEEcC----CCCC-------CCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHh
Confidence 97641 1111 12222 2333344455567888764 25443344444443
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=1.7 Score=43.92 Aligned_cols=118 Identities=10% Similarity=0.094 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCC--------CchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHHHH----cCC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQG--------NSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNLIE----AGV 311 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g--------~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l~~----aGa 311 (505)
+...+.+..+.++|.+.+-+....+ .....++.++.+|+.+ ++.++++- .--+.+++..+.+ .|+
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i 229 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNL 229 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 4456677778888999998876542 2245677888888876 57788772 2236666654443 344
Q ss_pred CEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 312 DGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 312 d~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
+.+.- .+. ..+..+..+++...+ .++||++++ +.+..++.+++..| +|+|++-
T Consensus 230 ~~iE~-----------P~~----~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik 285 (392)
T 3p3b_A 230 YWLEE-----------AFH----EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYD 285 (392)
T ss_dssp EEEEC-----------SSS----CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred CEEec-----------CCc----ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence 44421 111 133444444332111 579999999 99999999999998 7888774
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.77 E-value=2.8 Score=40.45 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-.+.++...+.. .++||++|.-. +.+.++.+.++|+|++.+
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv 101 (292)
T 2vc6_A 22 ALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLI 101 (292)
T ss_dssp HHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 46678888999999999886655422 23344444444433 36888886332 345677788899999977
Q ss_pred ccCCcceeecccccccCcChHHH-HHHHHHHHhhcCCcEEe------cCCCCCHHHHHHHH
Q 010640 317 GMGSGSICTTQEVCAVGRGQATA-VYKVSSIAAQSGVPVIA------DGGISNSGHIVKAL 370 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~-l~~v~~~~~~~~ipvIa------~GGI~~~~di~kal 370 (505)
.. +.+. .|+-.. +......++..++|||. .|--.++..+.+..
T Consensus 102 ~~----P~y~-------~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (292)
T 2vc6_A 102 VS----PYYN-------KPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIF 151 (292)
T ss_dssp EC----CCSS-------CCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred cC----CCCC-------CCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 41 1111 122222 33334455556789887 33334555554443
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.76 E-value=19 Score=34.58 Aligned_cols=169 Identities=13% Similarity=0.101 Sum_probs=99.4
Q ss_pred HHHHHHHHHHCCCCeeEEeeC-CeeeeE--EeechhhhhhcCCCCCCCccCCCCcceEEEeec--CCccHHHHHHHHHHc
Q 010640 185 LGQIDEVLEKNDVDFVVLEKD-GERLDV--VTREDVERLKGYPNLGKGTVGPDGKWMVGAAIG--TRESDKERLEHLVKA 259 (505)
Q Consensus 185 l~~a~~~l~~~~i~~lpVvd~-g~l~Gi--It~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~--~~~~~~e~~~~liea 259 (505)
+.+.++.+.+.+++.+.|.-- |+..-+ =.+..+++.... ...+++.+.+..+ ...+..+.++.+.+.
T Consensus 26 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~--------~~~gr~pviaGvg~~~t~~ai~la~~A~~~ 97 (294)
T 3b4u_A 26 MIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIA--------AGIAPSRIVTGVLVDSIEDAADQSAEALNA 97 (294)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHH--------TTCCGGGEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHH--------HhCCCCcEEEeCCCccHHHHHHHHHHHHhc
Confidence 556777888889988777644 543221 112223332211 1234444444443 345677788888889
Q ss_pred CccEEEEeCCCC----CchhHHHHHHHHHHhCC--CceEEEccc-------CCHHHHHHHH-HcC--CCEEEEccCCcce
Q 010640 260 GVNVVVLDSSQG----NSSFQIEMIKYAKKTYP--ELDVIGGNV-------VTMYQAQNLI-EAG--VDGLRVGMGSGSI 323 (505)
Q Consensus 260 Gad~I~i~~~~g----~~~~~~~~i~~l~~~~~--~~~Vi~g~V-------~t~e~a~~l~-~aG--ad~I~v~~g~g~~ 323 (505)
|+|.+.+-.+.- ...+..+..+.+.+..| ++|+++=++ .+.+...+|. +.. +-+|+-+.
T Consensus 98 Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiKds~----- 172 (294)
T 3b4u_A 98 GARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSS----- 172 (294)
T ss_dssp TCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEEECC-----
T ss_pred CCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEEECC-----
Confidence 999998754332 23566777777777765 789888332 4788888887 542 23333221
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+.+.-+.++.+.+. +..|+. | +..-+..++.+||+++.-|..-
T Consensus 173 -----------gd~~~~~~~~~~~~--~f~v~~--G--~d~~~l~~l~~G~~G~is~~~n 215 (294)
T 3b4u_A 173 -----------GNWSHTERLLKEHG--DLAILI--G--DERDLARGVRLGGQGAISGVAN 215 (294)
T ss_dssp -----------CCHHHHHHHHHHHT--TSEEEE--C--CHHHHHHHHHTTCCEEEESGGG
T ss_pred -----------CCHHHHHHHHHhCC--CeEEEE--c--cHHHHHHHHHCCCCEEEeCHHH
Confidence 12223333333333 455655 3 4556788999999999888653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 505 | ||||
| d1zfja1 | 365 | c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate d | 1e-63 | |
| d1zfja1 | 365 | c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate d | 9e-20 | |
| d1jr1a1 | 378 | c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate | 1e-62 | |
| d1jr1a1 | 378 | c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate | 2e-27 | |
| d1vrda1 | 330 | c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate d | 2e-56 | |
| d1vrda1 | 330 | c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate d | 1e-17 | |
| d1eepa_ | 388 | c.1.5.1 (A:) Inosine monophosphate dehydrogenase ( | 5e-47 | |
| d2cu0a1 | 368 | c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate d | 1e-44 | |
| d2cu0a1 | 368 | c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate d | 1e-20 | |
| d1pvna1 | 362 | c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate d | 3e-41 | |
| d1pvna1 | 362 | c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate d | 2e-17 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 3e-17 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 6e-16 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 2e-10 | |
| d1p0ka_ | 329 | c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera | 1e-04 | |
| d1vcfa1 | 310 | c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i | 6e-09 | |
| d1kbia1 | 414 | c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal | 7e-07 | |
| d1p4ca_ | 353 | c.1.4.1 (A:) Membrane-associated (S)-mandelate deh | 7e-07 | |
| d1pkla2 | 258 | c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter | 2e-04 | |
| d1tb3a1 | 349 | c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus | 3e-04 | |
| d2j9la1 | 169 | d.37.1.1 (A:578-746) Chloride channel protein 5, C | 4e-04 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 0.001 | |
| d1a3xa2 | 265 | c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter | 0.001 | |
| d2g50a2 | 282 | c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t | 0.002 | |
| d1ofda2 | 809 | c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy | 0.003 |
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 209 bits (533), Expect = 1e-63
Identities = 101/269 (37%), Positives = 151/269 (56%), Gaps = 8/269 (2%)
Query: 233 PDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV 292
+G+ +V AA+G ER E L +AG + +V+D++ G+S+ + I + +P +
Sbjct: 92 SEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTL 151
Query: 293 IGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGV 352
I GN+ T A+ L +AGVD ++VG+G GSICTT+ V VG Q TA+Y +++A + G
Sbjct: 152 IAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGK 211
Query: 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEA 412
+IADGGI SG IVKAL G + VM+GS AG+ EAPG GR+ K YRGMGS+ A
Sbjct: 212 TIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAA 271
Query: 413 MTKGSDQRYLG---DKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQS 469
M KGS RY ++A + +G+ G VA KG+ + + ++ G +GA +Q
Sbjct: 272 MKKGSSDRYFQGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQE 331
Query: 470 AHDLLRSRTLRLEVRTGAAQVEGGVHGLV 498
L + +GA +E H +
Sbjct: 332 ----LHENA-QFVEMSGAGLIESHPHDVQ 355
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Score = 88.6 bits (219), Expect = 9e-20
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGI 82
YT+DDV+ +P + V L T+L N+ L++P + + MDTVT MA A+A GG+
Sbjct: 11 GYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGL 70
Query: 83 GIVHSNCTAADQAR 96
G++H N + +QA
Sbjct: 71 GVIHKNMSITEQAE 84
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 206 bits (526), Expect = 1e-62
Identities = 177/293 (60%), Positives = 208/293 (70%), Gaps = 2/293 (0%)
Query: 215 EDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSS 274
+V ++K Y + + + GAAIGT E DK RL+ L AGV+VVVLDSSQGNS
Sbjct: 86 NEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSI 145
Query: 275 FQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGR 334
FQI MIKY K+ YP L VIGGNVVT QA+NLI+AGVD LRVGMG GSIC TQEV A GR
Sbjct: 146 FQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGR 205
Query: 335 GQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYV 394
QATAVYKVS A + GVPVIADGGI N GHI KAL LGASTVMMGS LA +TEAPG Y
Sbjct: 206 PQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYF 265
Query: 395 YQNGRRVKKYRGMGSLEAMTKGSDQ--RYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTM 452
+ +G R+KKYRGMGSL+AM K RY + K+K+AQGV GAV DKGS+ KF+PY +
Sbjct: 266 FSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLI 325
Query: 453 QAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVSYEKKSF 505
++ QD+GA SL ++ S L+ E RT +AQVEGGVH L SYEK+ F
Sbjct: 326 AGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 378
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 378 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 110 bits (277), Expect = 2e-27
Identities = 47/88 (53%), Positives = 57/88 (64%)
Query: 11 GFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTED 70
G +A +LF+ G TY+D + LP YIDF D V L++ LT+ I L P V+SPMDTVTE
Sbjct: 1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEA 60
Query: 71 YMAAAMAALGGIGIVHSNCTAADQARLV 98
MA AMA GGIG +H NCT QA V
Sbjct: 61 GMAIAMALTGGIGFIHHNCTPEFQANEV 88
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Score = 189 bits (480), Expect = 2e-56
Identities = 106/237 (44%), Positives = 149/237 (62%)
Query: 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG 295
+ +VGAA+GT ER+E LVKAGV+V+V+D++ G+S IE ++ K YP+L V+ G
Sbjct: 86 RLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG 145
Query: 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355
NV T + LI+AG D ++VG+G GSICTT+ V VG Q TAV + S +A + VP+I
Sbjct: 146 NVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPII 205
Query: 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTK 415
ADGGI SG IVKAL GA +VM+GS AG+ EAPG + GR+ K YRGMGSL AM
Sbjct: 206 ADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRS 265
Query: 416 GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472
GS RY + + +G+ G V KG+V + + ++ G +GA +++ +
Sbjct: 266 GSADRYGQEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQE 322
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Score = 82.0 bits (202), Expect = 1e-17
Identities = 38/89 (42%), Positives = 57/89 (64%)
Query: 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGI 82
+ T+DDV+ +P Y + V + TRLTR I +++P V++ MDTVTE +A A+A GGI
Sbjct: 4 ALTFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGI 63
Query: 83 GIVHSNCTAADQARLVVSAKSRRVPIFSS 111
GI+H N T +QAR V K R+ + ++
Sbjct: 64 GIIHKNLTPDEQARQVSIVKKTRLLVGAA 92
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Score = 166 bits (420), Expect = 5e-47
Identities = 101/263 (38%), Positives = 149/263 (56%), Gaps = 6/263 (2%)
Query: 213 TREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGN 272
++ E + +PN K + K VGAA+ ER+E LVKA V+++V+DS+ G+
Sbjct: 119 AYKNAEHKEDFPNACKD---LNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGH 175
Query: 273 SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV 332
S+ IE+IK K YP LD+I GN+VT A +LI G D L+VG+G GSICTT+ V V
Sbjct: 176 STRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGV 235
Query: 333 GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGA 392
G Q TA+ V + + +IADGGI SG +VKA+ GA +VM+G+ AG+ E+P
Sbjct: 236 GVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSE 295
Query: 393 YVYQNGRRVKKYRGMGSLEAMTKGSDQRYL---GDKAKLKIAQGVVGAVADKGSVLKFIP 449
+ NG++ K Y GMGS+ AM +GS RY ++ K + +G+ G V G + +
Sbjct: 296 EIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILT 355
Query: 450 YTMQAVKQGFQDLGASSLQSAHD 472
+ G LGA+++
Sbjct: 356 QLKGGLMSGMGYLGAATISDLKI 378
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Score = 159 bits (402), Expect = 1e-44
Identities = 98/268 (36%), Positives = 145/268 (54%), Gaps = 11/268 (4%)
Query: 234 DGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI 293
D + A D +R L KAGV+V+V+D++ ++ I+ +K ++ D I
Sbjct: 102 DENGELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVD-ADFI 160
Query: 294 GGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP 353
GN+ +L D ++VG+G GSICTT+ V VG Q TAV V+ A + G+
Sbjct: 161 VGNIANPKAVDDLT--FADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLY 218
Query: 354 VIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAM 413
VIADGGI SG IVKA+ GA VM+G+ LAG+ EAPG V NGR+ K+YRGMGSL AM
Sbjct: 219 VIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAM 278
Query: 414 TKGSDQRYL---GDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSA 470
KG +RY K + + +GV G V +G+V + + + +K G +GA +++
Sbjct: 279 MKGGAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRE- 337
Query: 471 HDLLRSRTLRLEVRTGAAQVEGGVHGLV 498
L+ + + T A E H ++
Sbjct: 338 ---LKEKG-EFVIITHAGIKESHPHDII 361
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Score = 91.0 bits (225), Expect = 1e-20
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 24 YTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIG 83
YT+DDV+ +P + V +STR+T N+ L++P +++ MDTVTE MA AMA GG+G
Sbjct: 13 YTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLG 72
Query: 84 IVHSNCTAADQARLVVSAK 102
++H N +Q V K
Sbjct: 73 VIHRNMGIEEQVEQVKRVK 91
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Score = 149 bits (377), Expect = 3e-41
Identities = 85/269 (31%), Positives = 135/269 (50%), Gaps = 14/269 (5%)
Query: 237 WMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYA-KKTYPELDVIGG 295
+ A +ER+ LV+AG +V+ +DSS G S +Q I + +K ++ V G
Sbjct: 99 RYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAG 158
Query: 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS----- 350
N+V + L +AG D +++G+G GSIC T+E +GRGQATAV V + +
Sbjct: 159 NIVDGEGFRYLADAGADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETG 218
Query: 351 -GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGS 409
+PV +DGGI H+ AL +GA +M+G + A E+P V NG +K+Y G GS
Sbjct: 219 IYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGS 278
Query: 410 LEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQS 469
A G K KL +GV V G + + ++ VK + GA ++
Sbjct: 279 SRARNWQRYDL--GGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQ 336
Query: 470 AHDLLRSRTLRLEVRTGAAQVEGGVHGLV 498
L+S+ ++ + + + VEGG H ++
Sbjct: 337 ----LQSKA-KITLVSSVSIVEGGAHDVI 360
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Score = 81.4 bits (200), Expect = 2e-17
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 18 FSQGYSYTYDDVIFLPHY--IDFPIDAVSLSTRLTR-------NIDLSLPCVASPMDTVT 68
+ +T+++ + +P +D V+LST L + I+L +P V++ M +V+
Sbjct: 3 YYNEPCHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVS 62
Query: 69 EDYMAAAMAALGGIGIVHSNCTAADQA 95
+ MA A+A GGI + + + QA
Sbjct: 63 GEKMAIALAREGGISFIFGSQSIESQA 89
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 78.4 bits (192), Expect = 3e-17
Identities = 25/188 (13%), Positives = 71/188 (37%), Gaps = 13/188 (6%)
Query: 209 LDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDS 268
+ + D++ ++ +L +G K + ++ L + V+ +D
Sbjct: 50 IRANSVRDIKEIQAITDLPI--IGIIKKDYPPQEPF-ITATMTEVDQLAALNIAVIAMDC 106
Query: 269 SQGNSSFQIEMIKYAKKTYPELD--VIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326
++ + +++ + ++ + ++ ++ T + +AG+D + T
Sbjct: 107 TKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVG--------TTL 158
Query: 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386
R +A + ++G+ VIA+G I + K LG + +++G +
Sbjct: 159 SGYTPYSRQEAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRP 218
Query: 387 TEAPGAYV 394
E ++
Sbjct: 219 KEIAERFI 226
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 74.9 bits (183), Expect = 6e-16
Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 11/188 (5%)
Query: 209 LDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDS 268
+ T+ED+ +K +L V K + + + ++ L+++ V+ LD+
Sbjct: 40 IRANTKEDILAIKETVDL---PVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDA 96
Query: 269 SQGNSSFQ--IEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326
+ + E++ Y + P + I ++ T+ +A+N G D + + + T
Sbjct: 97 TLQQRPKETLDELVSYIRTHAPNV-EIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQ 155
Query: 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386
++ + + VIA+G + + + LG ++G +
Sbjct: 156 GQLL-----YQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRP 210
Query: 387 TEAPGAYV 394
E +V
Sbjct: 211 KEITKRFV 218
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 60.2 bits (145), Expect = 2e-10
Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 20/169 (11%)
Query: 234 DGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQ----------IEMIKYA 283
+ ++ A +G+ + + E + G N + + + ++ I+
Sbjct: 94 NPNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQI 153
Query: 284 KKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRVGMGSG----SICTTQEVCAVGRGQA 337
++ G ++ A L EAG + +G G I + + +
Sbjct: 154 CSRVSVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNS 213
Query: 338 TAVYKVSSI----AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382
+ +S+ + +IA GG+ ++ + KA+ LGAS M
Sbjct: 214 WGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGH 262
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Score = 42.1 bits (98), Expect = 1e-04
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 26 YDDVIFLPHYI-DFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDY-------MAAAMA 77
DD+ F+ + D ++ V +ST++ + S P + M +A A +
Sbjct: 5 LDDITFVHVSLPDLALEQVDISTKIG-ELSSSSPIFINAMTGGGGKLTYEINKSLARAAS 63
Query: 78 ALGGIGIVHSNCTAADQA 95
G V S +A
Sbjct: 64 QAGIPLAVGSQMSALKDP 81
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Score = 55.3 bits (132), Expect = 6e-09
Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 18/220 (8%)
Query: 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVG 232
S + + + V + ++ +L R+D+ RL
Sbjct: 71 LGSGRILLERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFH 130
Query: 233 PD-GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELD 291
+ + V ERL L+ V+V + G S ++ ++
Sbjct: 131 VNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVA 190
Query: 292 VIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSG 351
GG + + G + E+C +G A A+ +V +
Sbjct: 191 GAGG-------------TSWARVEEWVRFGEVRHP-ELCEIGIPTARAILEVREVL--PH 234
Query: 352 VPVIADGGISNSGHIVKALVLGASTVMMGS-FLAGSTEAP 390
+P++A GG+ KAL LGA + + L + E
Sbjct: 235 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALEGA 274
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.2 bits (116), Expect = 7e-07
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 4/119 (3%)
Query: 268 SSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327
S + S + I+ KK ++ V E GV G+ + G
Sbjct: 226 SKFIDPSLTWKDIEELKKKTKL-PIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFS 284
Query: 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG-SFLAG 385
+ + + ++ + + V DGG+ ++KAL LGA V +G FL
Sbjct: 285 RAPIEVLAETMPILEQRNLKDK--LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA 341
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 48.8 bits (115), Expect = 7e-07
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 10/113 (8%)
Query: 268 SSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327
S Q ++SF E +++ + ++ +++ A I G DG+ + G
Sbjct: 202 SRQMDASFNWEALRWLRD-LWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDCA 260
Query: 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
+ ++ A++G PV+ D G IVKAL LGA V++G
Sbjct: 261 ISP---------MEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVLLG 304
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Score = 40.7 bits (95), Expect = 2e-04
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTM 300
IG E L+ L+++G++V ++ S G+ + I ++ EL G N+
Sbjct: 25 CTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAEL---GVNIAIA 81
Query: 301 YQAQN 305
+
Sbjct: 82 LDTKG 86
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 8/111 (7%)
Query: 270 QGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEV 329
+SF + + +I ++T A+ ++ V G+ V G
Sbjct: 199 FPKASFCWNDLSLLQSITRL-PIILKGILTKEDAELAMKHNVQGIVVSNHGGRQLDEVSA 257
Query: 330 CAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380
+ A + + V DGG+ ++KAL LGA + +G
Sbjct: 258 S-------IDALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLG 301
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 4e-04
Identities = 20/155 (12%), Positives = 52/155 (33%), Gaps = 5/155 (3%)
Query: 66 TVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCIND 125
T+ D M + + T D ++ P+ S + G +
Sbjct: 3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES--QRLVGFVLR 60
Query: 126 ANDFDGSNYVFVTESGTRRSRILGYVTKSDW-ENLSDNKVKIFDYMRDCSSNVSVPANYD 184
+ + G + I+ + S + +K+ + + S +V
Sbjct: 61 RDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNIL--DLSPFTVTDLTP 118
Query: 185 LGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVER 219
+ + ++ K + ++ +G L ++T++DV +
Sbjct: 119 MEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLK 153
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.8 bits (89), Expect = 0.001
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 347 AAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381
A G P++A GGI ++ ++ L GAS + + S
Sbjct: 251 RALPGFPILATGGIDSAESGLQFLHSGASVLQVCS 285
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (88), Expect = 0.001
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK 285
IG + ++ E L L KAG+N+V ++ S G+ + +I A+K
Sbjct: 25 GTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARK 69
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 38.1 bits (88), Expect = 0.002
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPEL 290
IG E L+ ++K+G+NV ++ S G + E IK +
Sbjct: 37 CTIGPASRSVETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVRTATESF 86
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Score = 37.6 bits (87), Expect = 0.003
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 352 VPVIADGGISNSGHIVKALVLGASTVMMGS 381
V + ADGG+ +V A ++GA GS
Sbjct: 670 VLLRADGGLKTGWDVVMAALMGAEEYGFGS 699
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 505 | |||
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 100.0 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 100.0 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 100.0 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 100.0 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 100.0 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 100.0 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 99.93 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 99.88 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 99.88 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 99.82 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 99.82 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 99.82 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.74 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.71 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.68 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.67 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.66 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.66 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.65 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.65 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.64 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.64 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.63 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.62 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.62 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.62 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.56 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.56 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.54 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.54 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.53 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.52 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.47 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.47 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.46 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.36 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.35 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.29 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 99.26 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.22 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 99.2 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.19 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.18 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.15 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.08 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 99.04 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.89 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 98.88 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 98.88 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 98.84 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.62 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.51 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 98.51 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 98.44 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 98.39 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 98.36 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 98.34 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.33 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 98.31 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.31 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 98.31 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 98.3 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 98.28 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 98.27 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 98.24 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.23 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 98.2 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 98.2 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.16 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 98.15 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 98.12 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 98.1 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 98.08 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.05 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 98.04 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.02 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.01 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 98.01 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 97.98 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 97.92 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 97.91 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 97.85 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.84 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 97.83 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 97.8 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 97.79 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 97.76 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.75 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 97.75 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 97.74 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 97.71 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 97.7 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 97.68 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 97.67 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 97.64 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 97.61 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 97.57 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 97.53 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.52 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.49 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 97.46 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.44 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 97.38 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 97.23 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.21 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 97.19 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.17 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.16 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 97.05 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.04 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 96.99 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 96.98 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 96.96 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 96.91 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 96.91 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 96.82 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 96.29 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.19 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 96.12 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 96.1 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 96.08 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 95.96 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 95.93 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 95.84 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 95.73 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 95.68 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 95.39 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.18 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 95.16 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 95.09 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 94.96 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 94.95 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 94.94 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 94.67 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 94.65 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 94.56 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.55 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.51 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 94.49 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 94.41 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 94.37 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 94.27 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 94.2 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 94.15 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 94.09 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 93.94 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 93.94 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 93.89 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 93.83 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 93.71 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 93.51 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 93.33 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 93.29 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 93.23 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 92.89 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 92.87 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 92.83 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 92.63 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 92.49 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 91.44 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 90.99 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 90.91 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 90.89 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 90.75 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 90.39 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 90.24 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 89.65 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 89.29 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 88.82 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 88.15 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 88.11 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 87.97 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 87.68 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 87.4 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 86.94 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 86.64 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 85.75 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 85.65 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 85.35 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 85.34 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 85.29 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 85.29 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 85.1 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 85.07 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 84.98 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 84.88 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 84.37 | |
| d2basa1 | 261 | Hypothetical protein YkuI, N-terminal domain {Baci | 84.34 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 84.26 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 84.07 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 83.96 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 83.86 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 83.55 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 83.54 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 83.35 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 83.17 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 83.01 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 82.19 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 82.08 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 82.06 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 81.3 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 81.25 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 80.88 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 80.63 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 80.62 |
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=100.00 E-value=3e-73 Score=577.74 Aligned_cols=376 Identities=59% Similarity=0.892 Sum_probs=340.3
Q ss_pred CccHHHhhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCC
Q 010640 11 GFSADRLFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCT 90 (505)
Q Consensus 11 ~~~~~~~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~ 90 (505)
||+++++|+.+.+||||||+|+|+++++.++++++.|++|+.+.+.+|+|+||||++++.+|+++|++.||+|+||++++
T Consensus 1 ~~~~~~~~~~~~~LtfdDVllvP~~st~~sr~V~l~t~lt~~~~l~iPIIsApMdtVt~~~mA~als~~GGLGvLhr~~~ 80 (378)
T d1jr1a1 1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVTEAGMAIAMALTGGIGFIHHNCT 80 (378)
T ss_dssp CBCHHHHTSSCCCCCGGGEEECCCCCCSCGGGCBCCEESSSSCEESSCEEECCCTTTCSHHHHHHHHHHTCEEEECCSSC
T ss_pred CCCHHHhhccCCCCCcccEEEeCCCCCCcHHHceeeeEEECCccCCCCEEECCCCCcCCHHHHHHHHHCCCeeEEcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEecccccccccccccccccc
Q 010640 91 AADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYM 170 (505)
Q Consensus 91 ~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im 170 (505)
++++.+++++++...+ .| . .
T Consensus 81 ~e~~~~ev~~v~~~~~----~p--~------------------------------------------------------~ 100 (378)
T d1jr1a1 81 PEFQANEVRKVKKYEQ----YP--L------------------------------------------------------A 100 (378)
T ss_dssp HHHHHHHHHHHHTSCC----CT--T------------------------------------------------------C
T ss_pred HHHHHHHHheehhhhh----Cc--c------------------------------------------------------c
Confidence 9999999988776542 22 0 0
Q ss_pred ccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHH
Q 010640 171 RDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDK 250 (505)
Q Consensus 171 ~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~ 250 (505)
..+...++.+++.++..++..
T Consensus 101 -----------------------------------------------------------~~~~~~~l~v~aavg~~~~~~ 121 (378)
T d1jr1a1 101 -----------------------------------------------------------SKDAKKQLLCGAAIGTHEDDK 121 (378)
T ss_dssp -----------------------------------------------------------CBCTTSCBCCEEEECSSTHHH
T ss_pred -----------------------------------------------------------ccccccCEEEEEEeccCHHHH
Confidence 111223456677887777888
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVC 330 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~ 330 (505)
++++.+.++|+++++++.++|++..+.+.++++++.+|++++++|+|.|.+.++.|.++|||+|.|++|+|+.|+++...
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~t 201 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVL 201 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHH
T ss_pred HHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeecccccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcH
Q 010640 331 AVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSL 410 (505)
Q Consensus 331 g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~ 410 (505)
|.|.|+++++.+|+++++.+++||||||||+++.|++|||++|||+||||++|+.|.|||++.++++|++||.||||+|.
T Consensus 202 GvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~ 281 (378)
T d1jr1a1 202 ACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSL 281 (378)
T ss_dssp CCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTST
T ss_pred ccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc--cccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccc
Q 010640 411 EAMTK--GSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAA 488 (505)
Q Consensus 411 ~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~ 488 (505)
.||.+ ++..|||++..+.+++||+++.+||+|++.+++.+|.++||++|+|+|++||+|||+..+++.++|+++|.++
T Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~~~~~~~~~f~~~t~~~ 361 (378)
T d1jr1a1 282 DAMDKHLSSQNRYFSEADKIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSA 361 (378)
T ss_dssp TTC----------------CCCCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHHHHSCSCEEECCHHH
T ss_pred hhhhcccchhhhhccccccccCCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHhhhccCCceEEEEChhh
Confidence 99976 6778999988888899999999999999999999999999999999999999999999889999999999999
Q ss_pred cccCccCcceeccccCC
Q 010640 489 QVEGGVHGLVSYEKKSF 505 (505)
Q Consensus 489 ~~e~~~~~~~~~~~~~~ 505 (505)
++||+|||+++++++-|
T Consensus 362 ~~e~~~h~~~~~~~~~~ 378 (378)
T d1jr1a1 362 QVEGGVHSLHSYEKRLF 378 (378)
T ss_dssp HHHHSCCSCSCCCCCCC
T ss_pred hhccCCCcccccccccC
Confidence 99999999999999876
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=100.00 E-value=8.1e-69 Score=548.56 Aligned_cols=379 Identities=36% Similarity=0.553 Sum_probs=298.2
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++++.++++++.|++|+++.+.+|||+||||++++.+||++|++.||+|+||+++++++|.+++++++
T Consensus 7 ~LtfDDVlLvP~~st~~~~~vdl~~~~t~~~~l~iPIisA~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~~v~~Vk 86 (388)
T d1eepa_ 7 ALTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVK 86 (388)
T ss_dssp CCCGGGEEECCCCCCSCGGGCCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHH
T ss_pred CCCcccEEEeCCCCCCCHHHceeeEEeeCCEecCCCEEecCCCCCCCHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
++... .+ +.. .+|... ...++|+. ..
T Consensus 87 ~~~~~---~~--~~~-----------------------------------~~d~~~------~~~~~~t~-------~~- 112 (388)
T d1eepa_ 87 TYKFQ---KT--INT-----------------------------------NGDTNE------QKPEIFTA-------KQ- 112 (388)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred hcccc---cc--ccc-----------------------------------cCcccc------ccchhhhh-------hh-
Confidence 76521 11 000 001100 00011111 00
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
++....+..|+.+...++.. .+|..+++.++++++.+++..++++.|+++|+|
T Consensus 113 ------------------------~~~~~~a~~d~~~~~~~p~~---~~d~~~~l~vgaAvg~~~~~~~ra~~L~~aG~D 165 (388)
T d1eepa_ 113 ------------------------HLEKSDAYKNAEHKEDFPNA---CKDLNNKLRVGAAVSIDIDTIERVEELVKAHVD 165 (388)
T ss_dssp ---------------------------------------CCTTC---CBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCS
T ss_pred ------------------------hhhhhHHHHhHHHHhhhhHH---HhhhhccchhhhccCCCHHHHHHHHHHHhhccc
Confidence 11111233444445555655 678889999999999999999999999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
++++|.++|++..+++.++++++.+|+++||+|||.|.+.++.|+++|||+|.|++|+|+.|+|+...|.|.|+++++.+
T Consensus 166 ~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG~pq~sai~~ 245 (388)
T d1eepa_ 166 ILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICD 245 (388)
T ss_dssp EEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHH
T ss_pred eeeeeccccchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeeccccccccccccccccCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
|.+.+...++|||+||||+++.||+|||++|||+||+|++|+.|.|||++.++++|++||.||||||..||.+++.+||+
T Consensus 246 ~~~~~~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~ 325 (388)
T d1eepa_ 246 VYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYF 325 (388)
T ss_dssp HHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC-------------------
T ss_pred HHHHhccCCceEEeccccCcCCceeeeEEeccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhcccccccc
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999889999998
Q ss_pred ccc---cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEeccc
Q 010640 423 GDK---AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGA 487 (505)
Q Consensus 423 ~~~---~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~ 487 (505)
+.. .+.+++||+++.+|++|++.+++.+|.++||++|+|+|++||+|||++ ++|+++|.|
T Consensus 326 ~~~~~~~~~~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~~-----~~fv~vt~~ 388 (388)
T d1eepa_ 326 QLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN-----SKFVKISHS 388 (388)
T ss_dssp -----------------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS-----CCEEECCCC
T ss_pred ccccccccccccCceEEEeCCCCCHHHHHHHHHHHHHHHhhccCcccHHHHhhC-----CEEEEECCC
Confidence 532 356689999999999999999999999999999999999999999998 699999975
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=3.2e-67 Score=529.82 Aligned_cols=344 Identities=38% Similarity=0.635 Sum_probs=310.8
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+|+||||+|+|+++.+.++++++.|++|+++.+.+|+|+||||++++.+|+++|++.||+|++|++++++++.+.++..+
T Consensus 11 ~l~fdDVllvP~~st~~s~~vdl~~~it~~~~~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e~~~~~~~~~ 90 (365)
T d1zfja1 11 GYTFDDVLLIPAESHVLPNEVDLKTKLADNLTLNIPIITAAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQAEEVRKVK 90 (365)
T ss_dssp CCCGGGEEECCCCCCSCGGGCCCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHH
T ss_pred cCCcceEEEeCCCCCcCHhHceeeEEeeCCcccCCCEEECCCCCcCCHHHHHHHHHCCCceEEcCccCHHHHHHHhhhhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988766655432
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+..
T Consensus 91 ~~~----------------------------------------------------------------------------- 93 (365)
T d1zfja1 91 RSE----------------------------------------------------------------------------- 93 (365)
T ss_dssp HHT-----------------------------------------------------------------------------
T ss_pred hcc-----------------------------------------------------------------------------
Confidence 211
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
.++.+++.++..++..++++.++++|+|
T Consensus 94 ----------------------------------------------------~~~~v~aavGv~~~~~er~~~l~~agvd 121 (365)
T d1zfja1 94 ----------------------------------------------------GRLLVAAAVGVTSDTFERAEALFEAGAD 121 (365)
T ss_dssp ----------------------------------------------------SCBCCEEEECSSTTHHHHHHHHHHHTCS
T ss_pred ----------------------------------------------------CceEEEEEeccCchHHHHHHHHHHcCCC
Confidence 0123444555666788999999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+++||.++|++..+.+.++++|+.+|+++||+|||.|.+.++.|.++|||+|.|++|+|+.|+|+...|.|+|+++++.+
T Consensus 122 ~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~ 201 (365)
T d1zfja1 122 AIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYD 201 (365)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHH
T ss_pred EEEEECCcccccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcceeeeeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
|+.+++.+++|||+||||+++.|++|||++|||+||+|++|+.|.|||++.++++|+++|.||||+|..||..++.+||+
T Consensus 202 ~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~ 281 (365)
T d1zfja1 202 AAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYF 281 (365)
T ss_dssp HHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC-------
T ss_pred HHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred ccc---cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCccCccee
Q 010640 423 GDK---AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGGVHGLVS 499 (505)
Q Consensus 423 ~~~---~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 499 (505)
.+. .+.+++||+++.+|++|++.+.+.+|.++||++|+|+|++||+|||++ ++|+++|+|+++||+|||+..
T Consensus 282 ~~~~~~~~~~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~~-----~~fv~vt~~~~~E~~~h~~~~ 356 (365)
T d1zfja1 282 QGSVNEANKLVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHEN-----AQFVEMSGAGLIESHPHDVQI 356 (365)
T ss_dssp -------CCCCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH-----CCEEECCHHHHHHHSCCSSCC
T ss_pred cccccccccccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhhC-----CEEEEECcccccccCCcceEE
Confidence 543 355789999999999999999999999999999999999999999998 699999999999999999975
Q ss_pred c
Q 010640 500 Y 500 (505)
Q Consensus 500 ~ 500 (505)
-
T Consensus 357 ~ 357 (365)
T d1zfja1 357 T 357 (365)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.8e-65 Score=519.27 Aligned_cols=356 Identities=37% Similarity=0.548 Sum_probs=311.7
Q ss_pred hhccCCCCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHH
Q 010640 17 LFSQGYSYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQAR 96 (505)
Q Consensus 17 ~~~~~~~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~ 96 (505)
+-..-.+||||||+|+|+++.+.++++++.|++++++.+.+|+|+||||++++.+|+++|++.||+|+||++++++++.+
T Consensus 6 ~~~~~k~ltfdDVlLvP~~sti~srdVdls~~~~~~~~l~iPIiss~MDtV~~~~mA~~la~~Gglgvlhr~~~~e~~~~ 85 (368)
T d2cu0a1 6 LEKAIKGYTFDDVLLIPQATEVEPKDVDVSTRITPNVKLNIPILSAAMDTVTEWEMAVAMAREGGLGVIHRNMGIEEQVE 85 (368)
T ss_dssp HHTCCCCCCGGGEEECCCCCSSCSTTCBCCEEEETTEEESSSEEECCCTTTCSHHHHHHHHHTTCEEEECSSSCHHHHHH
T ss_pred HHHHHhcCCcccEEEeCCCCcCchhhceeeEEeeCCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeeEecccCCHHHHHH
Confidence 33444589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCc
Q 010640 97 LVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 97 ~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~ 176 (505)
++.++++.+.. .++
T Consensus 86 ~v~~v~~~e~~--~~~---------------------------------------------------------------- 99 (368)
T d2cu0a1 86 QVKRVKRAEKY--KNA---------------------------------------------------------------- 99 (368)
T ss_dssp HHHHHHTCCCC--TTC----------------------------------------------------------------
T ss_pred HHHhhhhhhhc--ccc----------------------------------------------------------------
Confidence 99887665421 000
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHH
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHL 256 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~l 256 (505)
.++..+.+.+++... ++..++++.+
T Consensus 100 -----------------------------------------------------~~d~~~~~~v~~~~~--~~~~~r~~~l 124 (368)
T d2cu0a1 100 -----------------------------------------------------VRDENGELLVAAAVS--PFDIKRAIEL 124 (368)
T ss_dssp -----------------------------------------------------CBCTTSCBCCEEEEC--TTCHHHHHHH
T ss_pred -----------------------------------------------------ccccCccEEEEeccC--hHHHHHHHHH
Confidence 111223344445543 3356788899
Q ss_pred HHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcCh
Q 010640 257 VKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
Q Consensus 257 ieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~ 336 (505)
+++|+|+++||.++|+.....+.++++++.+ ++++|+|||.|.+.+..+ .|+|+|.|++|+|+.|+|+...|.|.|+
T Consensus 125 ~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~-~~~vIaGNVaT~e~~~~l--~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq 201 (368)
T d2cu0a1 125 DKAGVDVIVVDTAHAHNLKAIKSMKEMRQKV-DADFIVGNIANPKAVDDL--TFADAVKVGIGPGSICTTRIVAGVGVPQ 201 (368)
T ss_dssp HHTTCSEEEEECSCCCCHHHHHHHHHHHHTC-CSEEEEEEECCHHHHTTC--TTSSEEEECSSCSTTBCHHHHTCCCCCH
T ss_pred HHcCCCEEEecCcccchhhhhhhhhhhhhhc-ccceeeccccCHHHHHhh--hcCcceeecccCcccccchhhcccccch
Confidence 9999999999999999999999999999998 689999999999998765 6999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcc
Q 010640 337 ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKG 416 (505)
Q Consensus 337 ~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~ 416 (505)
++++.+|+..++..++|||+||||+++.|++|||++|||+||+|++|+.+.|||++.++++|++||.||||+|+.+|..+
T Consensus 202 ~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~ 281 (368)
T d2cu0a1 202 ITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKG 281 (368)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC-
T ss_pred HHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCcccccccccC
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccccccc---cccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEecccccccCc
Q 010640 417 SDQRYLGDK---AKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRTGAAQVEGG 493 (505)
Q Consensus 417 ~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 493 (505)
+..|++.+. ....++||+++.+|++|++++++.+|.++||++|+|+|++||+|||++ ++|+++|.++++||+
T Consensus 282 ~~~~~~~~~~~~~~~~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~~-----~~f~~vt~a~~~E~~ 356 (368)
T d2cu0a1 282 GAERYYQGGYMKTRKFVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEK-----GEFVIITHAGIKESH 356 (368)
T ss_dssp ---------CCCCSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH-----CCEEECCHHHHHHHS
T ss_pred CcccccccccccccccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhhC-----CEEEEECcccccccC
Confidence 888887543 245689999999999999999999999999999999999999999998 699999999999999
Q ss_pred cCcceecc
Q 010640 494 VHGLVSYE 501 (505)
Q Consensus 494 ~~~~~~~~ 501 (505)
|||+....
T Consensus 357 ~h~~~~~~ 364 (368)
T d2cu0a1 357 PHDIIITN 364 (368)
T ss_dssp CCSSCCSC
T ss_pred CCCeeeec
Confidence 99986543
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=100.00 E-value=1.6e-65 Score=519.59 Aligned_cols=343 Identities=33% Similarity=0.508 Sum_probs=307.4
Q ss_pred HhhccCCCCcccceeecCCCCCCC--CCCeeeeeeecC-------cccccceEEEccchhhhHHHHHHHHHHcCCeeEEc
Q 010640 16 RLFSQGYSYTYDDVIFLPHYIDFP--IDAVSLSTRLTR-------NIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVH 86 (505)
Q Consensus 16 ~~~~~~~~~~~~d~~l~p~~~~~~--~~~~~~~~~lt~-------~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~ 86 (505)
+||++. .||||||+|+|+++.+. |+++++.|++|. ++.+.+|||+||||++++.+|+++|++.|++|+||
T Consensus 2 ~~~~e~-~ltFdDVlLvP~~Sti~s~r~dVdl~~~l~~~~~~~~~~i~l~iPIIsAnMDTVt~~~mA~~la~~Gglgvih 80 (362)
T d1pvna1 2 KYYNEP-CHTFNEYLLIPGLSTVDCIPSNVNLSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKMAIALAREGGISFIF 80 (362)
T ss_dssp EECSSC-BCCGGGEEECCCCBCTTCCGGGCBCCEECSCEETTSCCSCEESSSEEECSCTTTCSHHHHHHHHHTTCEEEEC
T ss_pred ccccCC-CCCccceEEeCCCCcCCCCccceeeeeEEEeeccccccccccCCcEEecCCCCcCCHHHHHHHHHCCCEEEEe
Confidence 578888 89999999999999774 799999999974 77899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEecccccccccccccc
Q 010640 87 SNCTAADQARLVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKI 166 (505)
Q Consensus 87 ~~~~~~~~~~~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v 166 (505)
++++++++.+++...+.... ..
T Consensus 81 R~~~ie~~~~~~~~~~~~~~----~~------------------------------------------------------ 102 (362)
T d1pvna1 81 GSQSIESQAAMVHAVKNFRY----LV------------------------------------------------------ 102 (362)
T ss_dssp CSSCHHHHHHHHHHHHTCCC----CC------------------------------------------------------
T ss_pred ecCCHHHHHHHhhhhhhccc----cc------------------------------------------------------
Confidence 99999998777665433220 00
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCC
Q 010640 167 FDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTR 246 (505)
Q Consensus 167 ~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~ 246 (505)
.... ..
T Consensus 103 -------------------------------------------------------------------------~~~~-~~ 108 (362)
T d1pvna1 103 -------------------------------------------------------------------------GAGI-NT 108 (362)
T ss_dssp -------------------------------------------------------------------------EEEE-CS
T ss_pred -------------------------------------------------------------------------cccc-ch
Confidence 0000 12
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.+..++++.+.++|++++++|.++|+...+.+.++.+++.+ +..+|++|||.|++.++.|+++|+|+|.|++|+|+.|+
T Consensus 109 ~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CT 188 (362)
T d1pvna1 109 RDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICI 188 (362)
T ss_dssp SSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBC
T ss_pred hhhHHHHHHHhhcCceEEeechhccchhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEeccccccccc
Confidence 23667888899999999999999999999999999998766 56899999999999999999999999999999999999
Q ss_pred cccccccCcChHHHHHHHHHHHhhc------CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCe
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS------GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGR 399 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~------~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~ 399 (505)
|+..+|.|+|+++++.+|+.+++++ ++|||+||||+++.|++|||++|||+||+|++|+.|+|||++.++++|+
T Consensus 189 Tr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~ 268 (362)
T d1pvna1 189 TREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGS 268 (362)
T ss_dssp HHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTE
T ss_pred chhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeeccc
Confidence 9999999999999999999887753 5999999999999999999999999999999999999999999999999
Q ss_pred EeeeecccCcHHHHhcccccccc-ccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCc
Q 010640 400 RVKKYRGMGSLEAMTKGSDQRYL-GDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRT 478 (505)
Q Consensus 400 ~~k~~~g~~s~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~ 478 (505)
+||.||||||..||. .+||+ ++..+.+++||+++.+|++|++.+++.+|.++||++|+|+|++||+|||++
T Consensus 269 ~~k~~~Gm~S~~a~~---~~~~~~~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~----- 340 (362)
T d1pvna1 269 VMKEYWGEGSSRARN---WQRYDLGGKQKLSFEEGVDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK----- 340 (362)
T ss_dssp EEEEEECTTSTTTCC---GGGGCSSSCSSCSSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH-----
T ss_pred eeeeeeccccccccc---cccccccccccccCCCCcEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhC-----
Confidence 999999999999863 46675 455677899999999999999999999999999999999999999999998
Q ss_pred eeEEEecccccccCccCccee
Q 010640 479 LRLEVRTGAAQVEGGVHGLVS 499 (505)
Q Consensus 479 ~~~~~~~~~~~~e~~~~~~~~ 499 (505)
++|+++|.++++||+|||++.
T Consensus 341 ~~f~~~t~~~~~E~~~H~~~~ 361 (362)
T d1pvna1 341 AKITLVSSVSIVEGGAHDVIV 361 (362)
T ss_dssp CEEEEBCHHHHHHHSCCSSEE
T ss_pred CEEEEECccccccccCCceEe
Confidence 699999999999999999963
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-62 Score=489.71 Aligned_cols=327 Identities=44% Similarity=0.696 Sum_probs=282.0
Q ss_pred CCcccceeecCCCCCCCCCCeeeeeeecCcccccceEEEccchhhhHHHHHHHHHHcCCeeEEcCCCCHHHHHHHHHhhh
Q 010640 23 SYTYDDVIFLPHYIDFPIDAVSLSTRLTRNIDLSLPCVASPMDTVTEDYMAAAMAALGGIGIVHSNCTAADQARLVVSAK 102 (505)
Q Consensus 23 ~~~~~d~~l~p~~~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~vt~~~ma~al~~~Gg~g~i~~~~~~~~~~~~v~~v~ 102 (505)
+||||||+|+|+++.+.++++++.|++|+.+++++|+|+|+|+++++++|++++++.||+|++|++.+++++.+.+++++
T Consensus 4 ~LtfdDVllvP~~s~~~sr~vdl~t~lt~~l~~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~r~~~~e~~~~~i~~vk 83 (330)
T d1vrda1 4 ALTFDDVLLVPQYSEVLPKDVKIDTRLTRQIRINIPLVSAAMDTVTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVK 83 (330)
T ss_dssp CCCGGGEEECCCCCCCCGGGSCCCEESSSSCEESSSEEECCCTTTCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHH
T ss_pred ccccccEEEeCCCCCcccccceEEEEEecCcccCCCEEeCCCCCcCCHHHHHHHHHCCCeEEeecccchhhhHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998877776654
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcCCeEEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEecCC
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGSNYVFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVPAN 182 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~~~~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~~~ 182 (505)
+.. .
T Consensus 84 ~~~-----~----------------------------------------------------------------------- 87 (330)
T d1vrda1 84 KTR-----L----------------------------------------------------------------------- 87 (330)
T ss_dssp TCC-----B-----------------------------------------------------------------------
T ss_pred hhc-----c-----------------------------------------------------------------------
Confidence 322 0
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
.+++.++..++..++++.++++|+|
T Consensus 88 -------------------------------------------------------~v~~~vgv~~~~~e~~~~li~agvd 112 (330)
T d1vrda1 88 -------------------------------------------------------LVGAAVGTSPETMERVEKLVKAGVD 112 (330)
T ss_dssp -------------------------------------------------------CCEEEECSSTTHHHHHHHHHHTTCS
T ss_pred -------------------------------------------------------EEEEEEecCHHHHHHHHHHHHCCCC
Confidence 1112333344577889999999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
++++|.++|++..+.+.++.+++.+|+++|++|+|.|.+.++.|.++|||+|.|++|+|+.|+++...|.|.|+++++.+
T Consensus 113 ~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g~p~~sai~~ 192 (330)
T d1vrda1 113 VIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVME 192 (330)
T ss_dssp EEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHH
T ss_pred EEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccceeccccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYL 422 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~ 422 (505)
|+++++..++|||+||||+++.|++|||++|||+||||++|+.|.|||++..+++|++||.||||+|..++..+..+||+
T Consensus 193 ~~~~~~~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~ 272 (330)
T d1vrda1 193 CSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYG 272 (330)
T ss_dssp HHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC--------------
T ss_pred HHHHHHhcCceEEecCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccCchhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998878889999
Q ss_pred ccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhhhcCceeEEEec
Q 010640 423 GDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLLRSRTLRLEVRT 485 (505)
Q Consensus 423 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~~~~~~~~~~~~ 485 (505)
.+.+...++||+++.+||+|++.+++++|.++||++|+|+|++||+|||++ .+|+|+|
T Consensus 273 ~~~~~~~~~eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~-----~~fvrvt 330 (330)
T d1vrda1 273 QEGENKFVPEGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEK-----AVFVKIT 330 (330)
T ss_dssp -----------CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH-----CCEEECC
T ss_pred ccccccccCCCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcC-----CEEEEeC
Confidence 888777899999999999999999999999999999999999999999998 5999986
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=7.8e-25 Score=219.14 Aligned_cols=148 Identities=23% Similarity=0.282 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhCCCceEEE---cccCCHHHHHHHHHcCCCEEEEccCCcc----eeecc------cccccCcChHHHH
Q 010640 274 SFQIEMIKYAKKTYPELDVIG---GNVVTMYQAQNLIEAGVDGLRVGMGSGS----ICTTQ------EVCAVGRGQATAV 340 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~---g~V~t~e~a~~l~~aGad~I~v~~g~g~----~~~~~------~~~g~g~p~~~~l 340 (505)
...++.++++++.+ +.|+++ +++.+.+++..+.++|+|+|.+++++|+ .+..+ ....+++|.+.++
T Consensus 144 ~~~~~~i~~i~~~~-~~~vivk~v~~~~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 222 (329)
T d1p0ka_ 144 SGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 222 (329)
T ss_dssp TTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred cchHHHHHHHHHHc-CCCcEEEecCCcchHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHH
Confidence 45678889999988 667665 4557999999999999999999977664 22222 2456778888888
Q ss_pred HHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccc
Q 010640 341 YKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQR 420 (505)
Q Consensus 341 ~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~ 420 (505)
.++..... ++|||+||||+++.|++|||++|||+|++|++|+ |+++.
T Consensus 223 ~~~~~~~~--~v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l--------------------~al~~----------- 269 (329)
T d1p0ka_ 223 AEIRSEFP--ASTMIASGGLQDALDVAKAIALGASCTGMAGHFL--------------------KALTD----------- 269 (329)
T ss_dssp HHHHHHCT--TSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH--------------------HHHHH-----------
T ss_pred HHHHhhcC--CceEEEcCCcccHHHHHHHHHcCCCchhccHHHH--------------------HHhcc-----------
Confidence 88776553 5999999999999999999999999999999986 22221
Q ss_pred ccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 421 YLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 421 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.|.+ .|.++++.|.++|+++|.++||++++||++.
T Consensus 270 -----------~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 304 (329)
T d1p0ka_ 270 -----------SGEE-------GLLEEIQLILEELKLIMTVLGARTIADLQKA 304 (329)
T ss_dssp -----------HHHH-------HHHHHHHHHHHHHHHHHHHHTCCBHHHHTTC
T ss_pred -----------CCHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 2222 4789999999999999999999999999875
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=99.88 E-value=4.7e-22 Score=196.82 Aligned_cols=133 Identities=22% Similarity=0.332 Sum_probs=109.2
Q ss_pred CceEEEccc---CCHHHHHHHHHcCCCEEEEccCCccee------------ecccccccCcChHHHHHHHHHHHhhcCCc
Q 010640 289 ELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGSIC------------TTQEVCAVGRGQATAVYKVSSIAAQSGVP 353 (505)
Q Consensus 289 ~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~~~------------~~~~~~g~g~p~~~~l~~v~~~~~~~~ip 353 (505)
+.|++++.+ .+.++++.+.++|+|+|.+++++|... .+....++|+|++.++.++.++.. ++|
T Consensus 159 ~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~--~i~ 236 (310)
T d1vcfa1 159 PFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP--HLP 236 (310)
T ss_dssp SSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS--SSC
T ss_pred cCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcC--CCe
Confidence 678888655 689999999999999999997766311 112256788999999999887653 599
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQG 433 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g 433 (505)
||+||||+++.|++|||++||++|++|++|+.. . ..|
T Consensus 237 Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~--------------------~-----------------------~~G 273 (310)
T d1vcfa1 237 LVASGGVYTGTDGAKALALGADLLAVARPLLRP--------------------A-----------------------LEG 273 (310)
T ss_dssp EEEESSCCSHHHHHHHHHHTCSEEEECGGGHHH--------------------H-----------------------TTC
T ss_pred EEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHH--------------------h-----------------------ccC
Confidence 999999999999999999999999999998621 0 122
Q ss_pred eeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 434 VVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 434 ~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.+ .|+++++.|.++|+.+|.++|++|++||+.+
T Consensus 274 ~~-------gv~~~l~~l~~El~~~m~~~G~~~i~el~g~ 306 (310)
T d1vcfa1 274 AE-------RVAAWIGDYLEELRTALFAIGARNPKEARGR 306 (310)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHTCSSGGGGTTC
T ss_pred HH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHHhhh
Confidence 22 3789999999999999999999999999876
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=2.6e-22 Score=201.90 Aligned_cols=142 Identities=19% Similarity=0.250 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.+.++++.+ +.|++++++.+.+++..+.++|+|++++++++|... .++.+++.++.++++... .++|||
T Consensus 205 ~~~~i~~l~~~~-~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~~------d~~~~~~~~l~~i~~~~~-~~~~ii 276 (349)
T d1tb3a1 205 CWNDLSLLQSIT-RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQL------DEVSASIDALREVVAAVK-GKIEVY 276 (349)
T ss_dssp CHHHHHHHHTTC-CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSS------CSBCCHHHHHHHHHHHHT-TSSEEE
T ss_pred CHHHHHHHHHhc-CCCcccchhhhhHHHHHHHHhhccceeeeccccccc------cccccchhhcceeeeccC-CCeeEE
Confidence 467889999988 899999999999999999999999999998877533 245688889999887664 469999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
+||||++|.||+|||+|||++|++|++|+. |++ ..|.+
T Consensus 277 adGGIR~G~Dv~KALALGA~~V~igrp~L~--------------------~la----------------------~~G~~ 314 (349)
T d1tb3a1 277 MDGGVRTGTDVLKALALGARCIFLGRPILW--------------------GLA----------------------CKGED 314 (349)
T ss_dssp EESSCCSHHHHHHHHHTTCSCEEESHHHHH--------------------HHH----------------------HHHHH
T ss_pred eccCcCcHHHHHHHHHcCCCEEEEChHHHH--------------------HHH----------------------hccHH
Confidence 999999999999999999999999999962 221 12222
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+|+++|+.|+.+||++|+++|++|++||++..
T Consensus 315 -------gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~~~ 346 (349)
T d1tb3a1 315 -------GVKEVLDILTAELHRCMTLSGCQSVAEISPDL 346 (349)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGG
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHhh
Confidence 48899999999999999999999999997653
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.82 E-value=1.4e-20 Score=193.33 Aligned_cols=143 Identities=22% Similarity=0.254 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHh----hcC
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA----QSG 351 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~----~~~ 351 (505)
.++.+++++..+ +.|++++.+.+.+++..+.++|++++.+++++|..... ..++.+.+.++..++. ..+
T Consensus 234 ~~~~i~~i~~~~-~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~d~------~~~~~~~l~~i~~~~~~~~v~~~ 306 (414)
T d1kbia1 234 TWKDIEELKKKT-KLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDF------SRAPIEVLAETMPILEQRNLKDK 306 (414)
T ss_dssp CHHHHHHHHHHC-SSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSSTT------CCCHHHHHHHHHHHHHTTTCBTT
T ss_pred CHHHHHHHhccC-CceEEeeccchhHHHHHHHhcCCcceeecccccccccc------ccccccchhhhhhhhhhhccCCc
Confidence 357788899988 78999999999999999999999999999887754332 3445555555555443 125
Q ss_pred CcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccc
Q 010640 352 VPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIA 431 (505)
Q Consensus 352 ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~ 431 (505)
+|||+||||++|.||+|||+|||++|++|++|+. +++ .
T Consensus 307 ~~viadGGIR~G~DVaKALALGAdaVgigrp~L~--------------------~la----------------------~ 344 (414)
T d1kbia1 307 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLY--------------------ANS----------------------C 344 (414)
T ss_dssp BEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH--------------------HHH----------------------H
T ss_pred eeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHH--------------------HHH----------------------h
Confidence 8999999999999999999999999999999972 211 1
Q ss_pred cceeeeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 432 QGVVGAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 432 ~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
.|.+ +|..+|+.|+.+||.+|+++||+|++||++..
T Consensus 345 ~G~e-------gv~~~l~~l~~EL~~~M~l~G~~si~eL~~~~ 380 (414)
T d1kbia1 345 YGRN-------GVEKAIEILRDEIEMSMRLLGVTSIAELKPDL 380 (414)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGG
T ss_pred ccHH-------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHH
Confidence 2222 48899999999999999999999999998753
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=99.82 E-value=1.3e-19 Score=182.87 Aligned_cols=141 Identities=21% Similarity=0.290 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.+ +.|++++++.+.+++..+.+.|++.+.+++++|. . ..++.++..++.++.+.+. .++|||
T Consensus 212 ~~~~v~~l~~~~-~~~~~~kg~~~~~da~~a~~~g~~~~~vsnhggr-----~-ld~~~~~~~~l~~i~~~~~-~~~~ii 283 (359)
T d1goxa_ 212 SWKDVAWLQTIT-SLPILVKGVITAEDARLAVQHGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKAAQ-GRIPVF 283 (359)
T ss_dssp CHHHHHHHHHHC-CSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGT-----S-STTCCCHHHHHHHHHHHTT-TSSCEE
T ss_pred CHHHHHHHHhhc-ccceeeecccchHHHHHHHHccccceeccccccc-----c-cccccchhhhchhhhhccC-Ccccee
Confidence 356788898887 7899999999999999999999999999987653 2 2345788888888887665 369999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
+||||++|.||+|||+|||++|++|++|+. +++ ..|.+
T Consensus 284 adGGIR~G~Di~KALaLGAd~vgigrp~L~--------------------~la----------------------~~g~~ 321 (359)
T d1goxa_ 284 LDGGVRRGTDVFKALALGAAGVFIGRPVVF--------------------SLA----------------------AEGEA 321 (359)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEEECHHHHH--------------------HHH----------------------HHHHH
T ss_pred eccCcCcHHHHHHHHHcCCCEEEEcHHHHH--------------------HHH----------------------hccHH
Confidence 999999999999999999999999999972 111 11222
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
+|+++|+.|+.+||.+|+++|++|++||++.
T Consensus 322 -------gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~ 352 (359)
T d1goxa_ 322 -------GVKKVLQMMRDEFELTMALSGCRSLKEISRS 352 (359)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCSBTTTCCGG
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHh
Confidence 4889999999999999999999999999876
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=2.6e-19 Score=180.23 Aligned_cols=140 Identities=20% Similarity=0.346 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++.++++++.. +.|++++++.+.+++..+.+.|++++.+++++|....+ ..++..++.++... .++|||
T Consensus 210 ~~~~i~~l~~~~-~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~~~~~------~~~~~~~l~~i~~~---~~~~vi 279 (353)
T d1p4ca_ 210 NWEALRWLRDLW-PHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQLDC------AISPMEVLAQSVAK---TGKPVL 279 (353)
T ss_dssp CHHHHHHHHHHC-CSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSCTT------CCCGGGTHHHHHHH---HCSCEE
T ss_pred CHHHHHHHHhcc-ccchhhhcchhhhhHHHHHhcCCchhhhcccccccccc------cccchhcccchhcc---ccccee
Confidence 467888898887 78999999999999999999999999999877654432 34555666665443 468999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccccccccccccee
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVV 435 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (505)
+||||++|.||+|||+|||++|++|++|+. +++ .+|.+
T Consensus 280 asGGIR~G~Dv~KALaLGAd~vgigrp~L~--------------------~l~----------------------~~G~e 317 (353)
T d1p4ca_ 280 IDSGFRRGSDIVKALALGAEAVLLGRATLY--------------------GLA----------------------ARGET 317 (353)
T ss_dssp ECSSCCSHHHHHHHHHTTCSCEEESHHHHH--------------------HHH----------------------HHHHH
T ss_pred ecCCcCchHHHHHHHHcCCCEEEEcHHHHH--------------------HHH----------------------hccHH
Confidence 999999999999999999999999999972 111 12222
Q ss_pred eeeccCCchhhHHHHHHHHHHHHhhccCCCCHHHHHHhh
Q 010640 436 GAVADKGSVLKFIPYTMQAVKQGFQDLGASSLQSAHDLL 474 (505)
Q Consensus 436 ~~~~~~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~~~ 474 (505)
+|+++|+.|+.+||.+|+++||+|++||++..
T Consensus 318 -------gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~ 349 (353)
T d1p4ca_ 318 -------GVDEVLTLLKADIDRTLAQIGCPDITSLSPDY 349 (353)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGG
T ss_pred -------HHHHHHHHHHHHHHHHHHHhCCCCHHHcCHHh
Confidence 48899999999999999999999999997653
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.74 E-value=3.6e-18 Score=146.02 Aligned_cols=116 Identities=18% Similarity=0.340 Sum_probs=100.4
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccccccccc-ccccccCCCceEecC
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKI-FDYMRDCSSNVSVPA 181 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v-~~im~~~~~~~~v~~ 181 (505)
++|+.+| +++++++|+.+|+++|.+ ++ +||+|+. .+++++|+||.+|+......+.+. ..+|+. +++++++
T Consensus 1 ~gmi~dp--vtv~~~~tv~~a~~~m~~~~~~~~pVvD~~-~~~~lvGivt~~Di~~~~~~~~~~~~~~~~~--~~~~~~~ 75 (126)
T d1zfja4 1 NGVIIDP--FFLTPEHKVSEAEELMQRYRISGVPIVETL-ANRKLVGIITNRDMRFISDYNAPISEHMTSE--HLVTAAV 75 (126)
T ss_dssp TTTSSSC--CCBCSSSBHHHHHHHHHHTTCSEEEEESCT-TTCBEEEEEEHHHHHHCSCSSSBTTTSCCCS--CCCCEET
T ss_pred CCCEeCc--eEECCCCCHHHHHHHHHHhCCCcEEEEeec-cCCeEEEEeEHHHHHHhhccCCceeeeeecc--ceeecCC
Confidence 4688899 999999999999999999 77 9999851 157899999999997554444444 445565 8899999
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCC
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNL 226 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~ 226 (505)
++++.+++++|.+++++++||||+ |+++|+||++||+++..++.+
T Consensus 76 ~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~p~a 121 (126)
T d1zfja4 76 GTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHA 121 (126)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhCccc
Confidence 999999999999999999999998 999999999999999998776
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.71 E-value=5.9e-19 Score=149.69 Aligned_cols=113 Identities=18% Similarity=0.365 Sum_probs=65.6
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc--ccccccccccccCCCceEecC
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS--DNKVKIFDYMRDCSSNVSVPA 181 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~--~~~~~v~~im~~~~~~~~v~~ 181 (505)
+|+.+| ++++|++|+.||+++|.+ ++ +||+|++..+++++|+||.+|+++.. ..+.++.++|....+++++++
T Consensus 1 gm~~~p--vtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~ 78 (120)
T d1jr1a4 1 GFITDP--VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMTKREDLVVAPA 78 (120)
T ss_dssp SEECTT--CC----CCCC--CCBC---------------CTTCCC----------------------CCSBTTTSCCEET
T ss_pred CcccCC--EEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccCceeEEEEeeccCceEECC
Confidence 478899 999999999999999999 87 99998644468999999999997543 345567777766558999999
Q ss_pred CCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 182 NYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 182 ~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++++.+|+++|.+++++++||||+ |+++|+||++||+++.
T Consensus 79 ~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~~ 119 (120)
T d1jr1a4 79 GITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKNR 119 (120)
T ss_dssp TCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhcc
Confidence 999999999999999999999999 9999999999999874
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.68 E-value=2e-17 Score=140.44 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=83.9
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEec
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~ 180 (505)
++++|.++| +++++++|+.+|+++|.+ ++ +||+|+ +|+++|+||.+|+... ....++.++|.+ ++++++
T Consensus 3 v~diM~~~~--v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~~~~G~it~~dl~~~-~~~~~~~~~~~~--~~~~v~ 74 (122)
T d2yzqa2 3 VKTIMTQNP--VTITLPATRNYALELFKKYKVRSFPVVNK---EGKLVGIISVKRILVN-PDEEQLAMLVKR--DVPVVK 74 (122)
T ss_dssp HHHHSEESC--CCEESSCC------------CCEEEEECT---TCCEEEEEESSCC-----------CCCBS--CCCEEE
T ss_pred cccccCCCC--EEECCcCcHHHHHHHHHHcCCcEEEEEec---cccchhhhhcchhhhh-hcccchhhcccc--ceeecc
Confidence 345688888 999999999999999999 76 999998 8999999999999753 345678999999 999999
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++.+++++|.+++++++||||+ |+++|+||++||+++..
T Consensus 75 ~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~ 117 (122)
T d2yzqa2 75 ENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF 117 (122)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence 9999999999999999999999999 99999999999998754
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=2.6e-17 Score=139.88 Aligned_cols=109 Identities=18% Similarity=0.193 Sum_probs=97.2
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---c---ccccccccccccCCCc
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---S---DNKVKIFDYMRDCSSN 176 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~---~~~~~v~~im~~~~~~ 176 (505)
++|.+++ +++++++++.+|+++|.+ ++ +||+|+ +|+++|+||.+|+... . .....+.++|++ ++
T Consensus 5 diM~~~~--~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~--~~ 77 (123)
T d1y5ha3 5 DIMNAGV--TCVGEHETLTAAAQYMREHDIGALPICGD---DDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SI 77 (123)
T ss_dssp HHSEETC--CCEETTSBHHHHHHHHHHHTCSEEEEECG---GGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CC
T ss_pred HhcCCCC--cEECCcCcHHHHHHHHHHcCCCceEEEec---cchhhhhhhhhhHhhhhhhcCCCcccceEEEEeec--cc
Confidence 4577777 899999999999999999 77 999998 8999999999998521 1 234578899998 99
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
+++.+++++.+++++|.+++++++||+|+|+++|+||++||++++
T Consensus 78 ~~v~~~~~~~~~~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~l 122 (123)
T d1y5ha3 78 YYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTEADIARHL 122 (123)
T ss_dssp CCEETTCCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHTC
T ss_pred eeeeecchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHhhC
Confidence 999999999999999999999999999999999999999999875
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.66 E-value=5.2e-17 Score=141.09 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=101.6
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-------------cccccc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-------------DNKVKI 166 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-------------~~~~~v 166 (505)
+.+++|.+++ +++++++|+.+|++.|.+ ++ +||+|+ +++++|+||.+|+.... ....++
T Consensus 3 ~v~diM~~~~--~~v~~~~tl~~a~~~m~~~~~~~lpVvd~---~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v 77 (139)
T d2o16a3 3 KVEDMMTRHP--HTLLRTHTLNDAKHLMEALDIRHVPIVDA---NKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPL 77 (139)
T ss_dssp BGGGTSEESC--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHHHCC---------CCCBH
T ss_pred EHHHhCcCCC--eEECCcCCHHHHHHHHHHcCCCeeeeecc---cccccccccHHHHHHHHHhhhhhhhcccccccccch
Confidence 5667888888 999999999999999999 77 999998 89999999999985110 135689
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 167 FDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 167 ~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
.++|++ +++++++++++.+++++|.+++++++||+|+|+++|+||+.||+++..
T Consensus 78 ~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~lvGiit~~Dil~~~~ 131 (139)
T d2o16a3 78 FEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKDVLVGIITDSDFVTIAI 131 (139)
T ss_dssp HHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEEEETTEEEEEECHHHHHHHHH
T ss_pred hHhhcc--ccccccccchHHHHHHHHHHcCceEEEEEECCEEEEEEEHHHHHHHHH
Confidence 999998 999999999999999999999999999999999999999999998753
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.66 E-value=7.7e-17 Score=137.80 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=97.4
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-C-----e--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceE
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-N-----Y--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVS 178 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~-----~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~ 178 (505)
+|.+++ +++++++|+.+|++.|++ + + +||+|+ +++++|+++.+++... ..+.++.++|++ ++++
T Consensus 6 iM~~d~--i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~~l~G~v~~~~l~~~-~~~~~v~~im~~--~~~~ 77 (127)
T d2ouxa2 6 IMTTEF--VSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---ENHLVGVISLRDLIVN-DDDTLIADILNE--RVIS 77 (127)
T ss_dssp HCBSCC--CEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TCBEEEEEEHHHHTTS-CTTSBHHHHSBS--CCCC
T ss_pred hCCCCc--EEECCCCcHHHHHHHhHhhcccccceeeeEEEec---CCeEEEEEEeeccccc-cccEEhhhhccC--CCcc
Confidence 577778 999999999999999955 3 3 899998 9999999999999643 346789999999 9999
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++++.+++++|.+++++++||||+ |+++|+||.+||++...
T Consensus 78 v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ 122 (127)
T d2ouxa2 78 VHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID 122 (127)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence 999999999999999999999999998 99999999999998753
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.65 E-value=1.1e-16 Score=139.48 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=101.6
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc--ccc----cccccccccccc
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE--NLS----DNKVKIFDYMRD 172 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~--~~~----~~~~~v~~im~~ 172 (505)
.+++++|..++ +++++++|+.+|++.|.+ ++ +||+|+ +++++|+||.+|+. +.. ....++.++|++
T Consensus 3 m~v~dim~~~~--~~v~~~~tl~~a~~~m~~~~~~~~~V~d~---~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~ 77 (142)
T d1pvma4 3 MRVEKIMNSNF--KTVNWNTTVFDAVKIMNENHLYGLVVKDD---NGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK 77 (142)
T ss_dssp CBGGGTSBTTC--CEEETTCBHHHHHHHHHHHTCCEEEEECT---TSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS
T ss_pred EEHHHhCCCCC--cEECCcCcHHHHHHHHHHCCCceEeeecc---CCcccceEEeechhhhhhhhccccccccccccccc
Confidence 45677888888 999999999999999999 76 999997 89999999999984 211 235689999998
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 173 CSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 173 ~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++.+++++.+++++|.+++++++||+|+ |+++|+||+.||+++.
T Consensus 78 --~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l 125 (142)
T d1pvma4 78 --PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL 125 (142)
T ss_dssp --SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred --ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999965
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=2.2e-16 Score=133.64 Aligned_cols=111 Identities=10% Similarity=0.066 Sum_probs=100.6
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCceEec
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNVSVP 180 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~~v~ 180 (505)
..+.|.+++ +++++++|+.+|++.|.+ ++ +||+|+ +++++|+||.+|++.. ....++.++|+. ++++++
T Consensus 3 v~~~m~~~~--~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~---~~~~~Gii~~~dl~~~-~~~~~v~~~~~~--~~~~v~ 74 (121)
T d1vr9a3 3 VKKWVTQDF--PMVEESATVRECLHRMRQYQTNECIVKDR---EGHFRGVVNKEDLLDL-DLDSSVFNKVSL--PDFFVH 74 (121)
T ss_dssp GGGGCBSCS--CEEETTCBHHHHHHHHHHTTSSEEEEECT---TSBEEEEEEGGGGTTS-CTTSBSGGGCBC--TTCCEE
T ss_pred chhhhcCCC--eEECCCCCHHHHHHhhhhcCcEEEEEEeC---CceeEEEeehhhhhhh-hccccccccccC--ccEEEC
Confidence 445777888 999999999999999998 66 999987 8999999999999743 345689999998 999999
Q ss_pred CCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 181 ANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 181 ~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++.++++.|.+++...+||||+ |+++|+||+.|++++..
T Consensus 75 ~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~ 117 (121)
T d1vr9a3 75 EEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117 (121)
T ss_dssp TTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHH
Confidence 9999999999999999999999999 99999999999999864
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.64 E-value=1e-16 Score=140.12 Aligned_cols=109 Identities=16% Similarity=0.238 Sum_probs=98.9
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-C-----e--EEEEeCCCCCCeEEEEEeccccccccccccccccccccCCCce
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-N-----Y--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFDYMRDCSSNV 177 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~-----~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~im~~~~~~~ 177 (505)
.+|.+++ +++++++|+.+|++.|++ + + +||+|+ +++++|+++.+|+... ....++.++|++ +++
T Consensus 5 ~iM~~~~--itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~---~~~l~G~v~~~dl~~~-~~~~~v~~im~~--~~~ 76 (144)
T d2yvxa2 5 GLMTPEY--VAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KGRLKGVLSLRDLIVA-DPRTRVAEIMNP--KVV 76 (144)
T ss_dssp GGCBSCC--CEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT---TCBBCCBCBHHHHTTS-CTTCBSTTTSBS--SCC
T ss_pred cccCCCC--EEECCCCcHHHHHHHHHHhcccccceeeeEEecC---CCCEecccchhhhhhc-ccccchHHhccc--CCc
Confidence 4788888 999999999999999976 3 3 899998 8999999999999643 346789999999 999
Q ss_pred EecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 178 SVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 178 ~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++++++++.+|+++|.+++++++||||+ |+++|+||++||++...
T Consensus 77 ~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~ 122 (144)
T d2yvxa2 77 YVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLE 122 (144)
T ss_dssp CEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHH
Confidence 9999999999999999999999999999 99999999999998753
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.64 E-value=1.5e-16 Score=134.56 Aligned_cols=109 Identities=19% Similarity=0.174 Sum_probs=96.3
Q ss_pred CCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---c--ccccccccccccCCCc
Q 010640 105 RVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---S--DNKVKIFDYMRDCSSN 176 (505)
Q Consensus 105 ~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~--~~~~~v~~im~~~~~~ 176 (505)
+++|.+++ +++++++|+.+|++.|.+ ++ +||++ +++++|+||.+|++.. . ..+.++.++|++ ++
T Consensus 3 ~diM~~~~--~~v~~~~sl~ea~~~~~~~~~~~~~V~~----~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~--~~ 74 (120)
T d1pbja3 3 EDVMVTDV--DTIDITASLEDVLRNYVENAKGSSVVVK----EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DL 74 (120)
T ss_dssp HHHCBCSC--CEEETTCBHHHHHHHHHHHCCCEEEEEE----TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GG
T ss_pred HHhCCCCC--eEECCcCcHHHHHHHHHHcCceEEEEEe----CCcEEEEEEeeeccccccccccccceeEeeeccc--cc
Confidence 35677788 999999999999999998 77 77776 6899999999999731 1 235689999999 99
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
+++++++++.+|+++|.+++++++||+++|+++|+||++|++++.
T Consensus 75 ~~v~~~~~l~~a~~~m~~~~~~~l~V~~~~~l~Givt~~Dil~A~ 119 (120)
T d1pbja3 75 VTISPRATIKEAAEKMVKNVVWRLLVEEDDEIIGVISATDILRAK 119 (120)
T ss_dssp GEECTTSCHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHhcC
Confidence 999999999999999999999999998889999999999999874
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=5.5e-16 Score=133.28 Aligned_cols=113 Identities=15% Similarity=0.260 Sum_probs=101.3
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---c--ccccccccccccCCC
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---S--DNKVKIFDYMRDCSS 175 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~--~~~~~v~~im~~~~~ 175 (505)
+.++|.+++ +++++++|+.+|++.|.+ ++ +||+|+ +++++|+||.+|++.. . ..+.++.++|.+ +
T Consensus 7 V~~im~~~~--~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~--~ 79 (132)
T d2yzia1 7 IKVYMTKKL--LGVKPSTSVQEASRLMMEFDVGSLVVIND---DGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR--N 79 (132)
T ss_dssp GGGTCBCCC--CEECTTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--S
T ss_pred HHHHcCCCC--eEECCcCcHHHHHHHHHHcCCcEEEEecc---cceeeeeeeHHHHHHHHhhccCccceeEeecccc--c
Confidence 456788888 999999999999999999 77 999998 8999999999998621 1 245689999999 9
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 176 NVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 176 ~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
+.++.+++++.++++.|.+++++++||+++|+++|+||.+|++++...
T Consensus 80 ~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~~~~vGivt~~Dil~a~~~ 127 (132)
T d2yzia1 80 LITANVNTPLGEVLRKMAEHRIKHILIEEEGKIVGIFTLSDLLEASRR 127 (132)
T ss_dssp CCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC
T ss_pred ccccCcchHHHHHHHHHHHcCCCEEEEEECCEEEEEEEHHHHHHHHHH
Confidence 999999999999999999999999999877999999999999998754
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=6.3e-16 Score=136.55 Aligned_cols=112 Identities=10% Similarity=0.063 Sum_probs=99.5
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc--------------------
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL-------------------- 159 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~-------------------- 159 (505)
+.+++|.+++ +++.+++++.+|+++|.+ ++ +||+|+ +|+++|+||..|+...
T Consensus 5 ~v~~~m~r~v--~~v~~~~~l~~a~~~m~~~~~~~lPVvd~---~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T d2yzqa1 5 EIEPYYQRYV--SIVWEGTPLKAALKALLLSNSMALPVVDS---EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEW 79 (156)
T ss_dssp BSTTTSBSCC--CCEETTSBHHHHHHHHHTCSSSEEEEECT---TSCEEEEEEGGGGGGCGGGCC---------------
T ss_pred CHHHHhcCCC--eEECCcCcHHHHHHHHHHcCCCEEEEEeC---CCCceeEEeeeechhhhcccccccccccccchhhhh
Confidence 4556788888 999999999999999999 77 999998 8999999999998410
Q ss_pred ---------------cccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 160 ---------------SDNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 160 ---------------~~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.....++.++|++ +++++.+++++.++++.|.+++++++||+|+ |+++|+||++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l 155 (156)
T d2yzqa1 80 ILESHPTLLFEKFELQLPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVL 155 (156)
T ss_dssp -----------------CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGG
T ss_pred hhhhhhhhhHHHhhhcccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHh
Confidence 0124478999999 9999999999999999999999999999998 9999999999999875
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.62 E-value=3.2e-16 Score=133.83 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=99.5
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc----cccccccccccccCCCc
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL----SDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~----~~~~~~v~~im~~~~~~ 176 (505)
+++.|.+++ +++++++|+.+|.++|.+ ++ +||++ +++++|+||.+|++.. .....++.++|.+ ++
T Consensus 6 V~d~m~~~~--v~v~~~~tl~~a~~~m~~~~~~~~pV~d----~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~ 77 (127)
T d2ef7a1 6 VKEYMKTQV--ISVTKDAKLNDIAKVMTEKNIGSVIVVD----GNKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SL 77 (127)
T ss_dssp GGGTSBCSC--CEEETTCBHHHHHHHHHHHTCSEEEEEE----TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CC
T ss_pred HHHhCCCCC--eEECCcCcHHHHHHHHHHcCCceEEeec----ccchhhhcchhHHHHHHHhhccccchhhhhhhh--hc
Confidence 446788888 999999999999999988 77 99998 6899999999999732 2346789999999 99
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.++++++++.++++.|.+++++++||+|+ |+++|+||+.||++++.
T Consensus 78 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~ 124 (127)
T d2ef7a1 78 ITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAID 124 (127)
T ss_dssp CCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999998763
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.62 E-value=3.2e-16 Score=133.86 Aligned_cols=101 Identities=17% Similarity=0.243 Sum_probs=91.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccc---cc---ccccccccccccCCCceEecCCCCH
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWEN---LS---DNKVKIFDYMRDCSSNVSVPANYDL 185 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~---~~---~~~~~v~~im~~~~~~~~v~~~~~l 185 (505)
+++++++|+.+|+++|.+ ++ +||++ +++++|++|.+|+.. .. ..+.++.++|++ +++++.+++++
T Consensus 16 ~~i~~~~tl~~a~~~m~~~~~~~vpV~~----~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l 89 (127)
T d2rc3a1 16 VAIGPDDSVFNAMQKMAADNIGALLVMK----DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTN 89 (127)
T ss_dssp CEECTTSBHHHHHHHHHHHTCSEEEEEE----TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBH
T ss_pred EEECCcCcHHHHHHHHHHcCCCEEEEEE----CCeEEEEEEccchhhhhhhhcccccceeEeeeccc--eeEEeccCccH
Confidence 889999999999999999 77 99987 689999999999852 11 235689999999 99999999999
Q ss_pred HHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 186 GQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 186 ~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
.+++++|.+++++++||+|+|+++|+||+.|++++.
T Consensus 90 ~~a~~~m~~~~~~~lpVvd~~~~~GiIt~~Dil~~~ 125 (127)
T d2rc3a1 90 EDCMALITEMRVRHLPVLDDGKVIGLLSIGDLVKDA 125 (127)
T ss_dssp HHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEEEECCEEEEEEEHHHHHHHH
Confidence 999999999999999999999999999999999874
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.56 E-value=3.4e-15 Score=128.50 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=98.2
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc---------------cccc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS---------------DNKV 164 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~---------------~~~~ 164 (505)
+++++|.++| +++++++|+.+|++.|.+ ++ +||+| ++++|++|..|+.... ....
T Consensus 2 ~V~~lM~~~~--~~v~~~~tl~~a~~~m~~~~~~~l~V~d-----~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (135)
T d3ddja2 2 NIETLMIKNP--PILSKEDRLGSAFKKINEGGIGRIIVAN-----EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTT 74 (135)
T ss_dssp SGGGTCEESC--CEECTTSBHHHHHHHTTGGGCCEEEEES-----SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTS
T ss_pred EeeEEeeCCC--eEECCCCcHHHHHHHHHHhCCeEEEEEe-----cceeceeeccchhhhhccccccchhhhhccccccC
Confidence 3567888899 999999999999999988 77 89986 4699999999975210 1356
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
++.++|++ +++++++++++.+++++|.+++++++||+|+ |+++|+||++||++...
T Consensus 75 ~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~ 131 (135)
T d3ddja2 75 PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK 131 (135)
T ss_dssp BGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred CHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence 89999999 9999999999999999999999999999999 99999999999999865
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.56 E-value=9.4e-16 Score=133.03 Aligned_cols=110 Identities=10% Similarity=0.038 Sum_probs=98.6
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----------ccccccccccc
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----------DNKVKIFDYMR 171 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----------~~~~~v~~im~ 171 (505)
++|+.++ +++++++|+.+|+++|.+ ++ +||+++ +++++|+++.+|+.... ....++.++|+
T Consensus 6 ~iMt~~v--~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~ 80 (141)
T d3ddja1 6 VFMSTKV--QTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMV 80 (141)
T ss_dssp HHSBCSC--CCEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSB
T ss_pred HhCcCCC--eEEcCcCcHHHHHHHHHHcCCCeeecccc---cCccccccccccchhhhhccccccccccccCCCHHHHhC
Confidence 4677778 999999999999999999 77 999998 89999999999985211 13568999999
Q ss_pred cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 172 DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 172 ~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+ +++++.+++++.+++++|.+++++++||+|+ |+++|+||++||++...
T Consensus 81 ~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~ 130 (141)
T d3ddja1 81 T--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALH 130 (141)
T ss_dssp C--CCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred c--ccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHH
Confidence 8 9999999999999999999999999999998 99999999999998763
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.54 E-value=3.6e-15 Score=127.70 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=95.0
Q ss_pred ccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc---cccccccccccccCCCc
Q 010640 103 SRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL---SDNKVKIFDYMRDCSSN 176 (505)
Q Consensus 103 ~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~---~~~~~~v~~im~~~~~~ 176 (505)
++.++|.++| +++++++|+.||++.|.+ ++ +||++.+ .+++++|+++..|++.. ..........|.+ ++
T Consensus 2 ~V~dim~~~~--v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d-~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~--~~ 76 (131)
T d2riha1 2 RTSELLKRPP--VSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLDLDGPAMPIAN--SP 76 (131)
T ss_dssp BGGGGCCSCC--EEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCB--CC
T ss_pred CHHHhccCCC--EEECCCCcHHHHHHHHHHhCCCcEEEEEEc-CCCEEEEEEeeeccccccccccccccccccccc--cc
Confidence 4567888899 999999999999999998 76 8888421 16889999999999732 1223334455555 78
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.++.+++++.+++++|.+++++++||+|+ |+++|+||++||+++.
T Consensus 77 ~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~ 122 (131)
T d2riha1 77 ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 122 (131)
T ss_dssp CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred eeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence 89999999999999999999999999999 9999999999999875
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=5.4e-15 Score=128.74 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=97.2
Q ss_pred hhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----------------
Q 010640 101 AKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS----------------- 160 (505)
Q Consensus 101 v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~----------------- 160 (505)
+++..+.|..+| +++++++++.+|++.|.+ ++ +||+|+ +++++|+||.+|+....
T Consensus 3 ~~~v~~~m~~~p--~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~ 77 (145)
T d1o50a3 3 VKDVCKLISLKP--TVVEEDTPIEEIVDRILEDPVTRTVYVAR---DNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSS 77 (145)
T ss_dssp HHHHTTSSCCCC--EEECTTCBHHHHHHHHHHSTTCCEEEEEE---TTEEEEEEEHHHHHHHHHHHHHCCCC-------C
T ss_pred ceEhHHhCCCCC--EEECCcCcHHHHHHHHHHcCCceEEEecc---CcceeeeeccchhhhhhhcccccccchhHHHHhh
Confidence 344556778899 999999999999999999 77 999998 89999999999985210
Q ss_pred ---ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 161 ---DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 161 ---~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
....++.++|. +++++.+++++.+|+++|.+++++++||||+ |+++|+||.+||++.+.
T Consensus 78 ~~~~~~~~~~~~~~---~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~ 140 (145)
T d1o50a3 78 MKRLIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW 140 (145)
T ss_dssp CCCCSSCBHHHHCB---CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred hhhccccCHHHHcC---CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence 12345666665 5788999999999999999999999999998 99999999999999864
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.53 E-value=6.9e-15 Score=129.91 Aligned_cols=116 Identities=10% Similarity=0.035 Sum_probs=99.2
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------------------
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------------------ 160 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------------------ 160 (505)
.++.++|.+++ +++++++|+.+++++|.+ ++ +||+|++ .++.++|+++..|++...
T Consensus 11 ~~V~diM~~~~--~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~-~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~ 87 (160)
T d2d4za3 11 IQVGDIMVRDV--TSIASTSTYGDLLHVLRQTKLKFFPFVDTP-DTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTL 87 (160)
T ss_dssp CBTTSSSBSSC--CCEETTCBHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBH
T ss_pred eEHHHhcCCCC--eEECCCCcHHHHHHHHHhcCCCcccccccc-ccccccccchHHHHHHHHhhccccccccchhhcccc
Confidence 36678999999 999999999999999999 77 9999851 157899999999985110
Q ss_pred ------------ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 161 ------------DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 161 ------------~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
.....+.++|.+ +++++.+++++.+++++|.+++++++||+|+|+++||||++||+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~g~lvGiIt~~Di~k~I~ 159 (160)
T d2d4za3 88 EEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIE 159 (160)
T ss_dssp HHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred chhhhhhhhhcccccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEECCEEEEEEEHHHHHHHhC
Confidence 112346678998 999999999999999999999999999998899999999999999863
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.52 E-value=3.3e-15 Score=128.23 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=92.2
Q ss_pred ccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc----------cccccccccccccC
Q 010640 107 PIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL----------SDNKVKIFDYMRDC 173 (505)
Q Consensus 107 ~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~----------~~~~~~v~~im~~~ 173 (505)
+|++.-+.+.+++++|+.+|++.|.+ ++ +||+|+ +++++|++|.+|+... .....++.++|++
T Consensus 7 ~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~---~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~~- 82 (132)
T d1yava3 7 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT- 82 (132)
T ss_dssp HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC-
T ss_pred ccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec---ccccccEEEcchhHHHhhccccccccccccccccccccc-
Confidence 44332233789999999999999999 88 999997 8999999999999611 1235689999998
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
+++++.+++++.+++++|.+++ .+||+|+ |+++|+||++|++++.
T Consensus 83 -~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l 128 (132)
T d1yava3 83 -DIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKEL 128 (132)
T ss_dssp -SCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHH
T ss_pred -cccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHH
Confidence 9999999999999999998764 5999999 9999999999999875
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.47 E-value=5.9e-14 Score=123.43 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=93.7
Q ss_pred cCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------cccccccccccc----CCCc
Q 010640 110 SSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------DNKVKIFDYMRD----CSSN 176 (505)
Q Consensus 110 ~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~v~~im~~----~~~~ 176 (505)
.++ +++.++.|+.+|+++|.+ ++ +||+|+ +++++|+||.+|++... ..+.++.++|+. ..++
T Consensus 12 ~~v--v~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 86 (153)
T d2ooxe2 12 SNL--ATASMETKVYDVIKMLAEKNISAVPIVNS---EGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGV 86 (153)
T ss_dssp SSC--CCBCTTSBHHHHHHHHHHTTCSEEEEECG---GGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCC
T ss_pred CCC--eEEeCcCcHHHHHHHHHHcCcceEeeecc---cceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCC
Confidence 467 899999999999999999 77 999998 89999999999986221 234466666642 1267
Q ss_pred eEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCC
Q 010640 177 VSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPN 225 (505)
Q Consensus 177 ~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~ 225 (505)
+++.+++++.++++.|.+++++++||||+ |+++|+||++|++++.....
T Consensus 87 ~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~ 136 (153)
T d2ooxe2 87 HTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK 136 (153)
T ss_dssp CEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCT
T ss_pred eEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCc
Confidence 78999999999999999999999999998 99999999999999876543
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=8e-14 Score=121.28 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=91.9
Q ss_pred ccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------cccc------ccccccccC
Q 010640 109 FSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------DNKV------KIFDYMRDC 173 (505)
Q Consensus 109 ~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~------~v~~im~~~ 173 (505)
.+++ +++++++|+.||+++|.+ ++ +||+|+ +++++|+||..|++... .... .....|.+
T Consensus 19 ~~~v--~~v~~~~tv~eal~~m~~~~~~~lpVvd~---~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~- 92 (145)
T d2v8qe1 19 YANI--AMVRTTTPVYVALGIFVQHRVSALPVVDE---KGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE- 92 (145)
T ss_dssp CSSC--CCEETTCBHHHHHHHHHHHCCSEEEEECT---TSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC-
T ss_pred CCCc--eEEcCcCcHHHHHHHHHHcCCCccccccc---CCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC-
Confidence 3466 899999999999999999 87 999998 89999999999996221 1122 33445666
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 174 SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 174 ~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+++++.+++++.+++++|.+++++++||+|+ |+++|+||++||++++..
T Consensus 93 -~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~ 142 (145)
T d2v8qe1 93 -GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL 142 (145)
T ss_dssp -SCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred -CCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence 8899999999999999999999999999998 999999999999998743
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=4.2e-14 Score=122.43 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=87.5
Q ss_pred CccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------ccccc------ccccc
Q 010640 106 VPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------DNKVK------IFDYM 170 (505)
Q Consensus 106 ~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------~~~~~------v~~im 170 (505)
.++..++ +++.+++|+.+|++.|.+ ++ +||+|+ +++++|+||.+|+.... ..... ....+
T Consensus 13 ~~~~~~v--~tv~~~~~v~~a~~~m~~~~~~~ipVvd~---~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (140)
T d2nyca1 13 IITQDNM--KSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDD 87 (140)
T ss_dssp CCBCSSC--CCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC--
T ss_pred CccCCCC--EEEcCcCcHHHHHHHHHHcCCcEEEEEec---CCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhc
Confidence 3555667 899999999999999998 77 999998 89999999999986211 11111 22334
Q ss_pred ccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 171 RDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 171 ~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
.. +++++++++++.++++.|.+++++.+||||+ |+++|+||++||++++
T Consensus 88 ~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l 137 (140)
T d2nyca1 88 FE--GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI 137 (140)
T ss_dssp ------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred cc--ccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence 44 7889999999999999999999999999998 9999999999999875
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=5.6e-13 Score=118.96 Aligned_cols=105 Identities=17% Similarity=0.256 Sum_probs=89.6
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc-----------------------------cc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS-----------------------------DN 162 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~-----------------------------~~ 162 (505)
+.+.+++|++|+.++|.+ ++ +||++++ ++++++|+||.+||.... ..
T Consensus 20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~-~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (169)
T d2j9la1 20 VLTQDSMTVEDVETIISETTYSGFPVVVSR-ESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPP 98 (169)
T ss_dssp CEESSCEEHHHHHHHHHHCCCSEEEEESCT-TTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCC
T ss_pred EECCCcCCHHHHHHHHHHcCCCceeeeecC-CCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhcccc
Confidence 456788999999999999 87 9999431 178999999999985100 12
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~ 222 (505)
..++.++|++ +++++.+++++.+++++|.+++.+.+||+|+|+++|+||++||+++..
T Consensus 99 ~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~g~lvGiIt~~Dil~~l~ 156 (169)
T d2j9la1 99 TLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNGRLLGIITKKDVLKHIA 156 (169)
T ss_dssp CEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred ccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEECCEEEEEEEHHHHHHHHH
Confidence 4468999999 999999999999999999999999999998899999999999999764
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=4.5e-13 Score=118.16 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=95.9
Q ss_pred hccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccc------------------
Q 010640 102 KSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLS------------------ 160 (505)
Q Consensus 102 ~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~------------------ 160 (505)
++..|.|....+.+.++.++++.+|++.|.+ ++ +||+++. +++++|+||.+|+....
T Consensus 13 ~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~--~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (159)
T d2v8qe2 13 HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK--KQSFVGMLTITDFINILHRYYKSALVQIYELEEHK 90 (159)
T ss_dssp SBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT--TTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCB
T ss_pred CEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECC--CCcEEEEEEHHHHHHHHHhccccccchhhhhhhhh
Confidence 4556666443334789999999999999999 87 9999852 68999999999985210
Q ss_pred --ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEee-C-CeeeeEEeechhhhhhc
Q 010640 161 --DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEK-D-GERLDVVTREDVERLKG 222 (505)
Q Consensus 161 --~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd-~-g~l~GiIt~~dil~~~~ 222 (505)
.......++|.+ +++++++++++.+++++|.+++++++||+| + |+++|+||.+||++.+.
T Consensus 91 ~~~~~~~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~ 154 (159)
T d2v8qe2 91 IETWREVYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK 154 (159)
T ss_dssp HHHHHHHHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred cccccceeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence 012245678888 999999999999999999999999999998 5 89999999999998763
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.29 E-value=1.3e-12 Score=117.41 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=93.6
Q ss_pred cCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccccc----------c----------
Q 010640 104 RRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENL----------S---------- 160 (505)
Q Consensus 104 ~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~----------~---------- 160 (505)
..|+|....+.++++++.++.+|++.|.+ ++ +||+|++ +++++|++|.+|+... .
T Consensus 22 ~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~--~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~ 99 (179)
T d2ooxe1 22 SYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE--ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFR 99 (179)
T ss_dssp HHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETT--TTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSB
T ss_pred eeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCC--CCeeEEEEeechHHHHHHhccccccchhhhhhhhccc
Confidence 33566533233899999999999999999 88 9999952 6899999999998511 0
Q ss_pred ----ccccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-C-----eeeeEEeechhhhhhcC
Q 010640 161 ----DNKVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-G-----ERLDVVTREDVERLKGY 223 (505)
Q Consensus 161 ----~~~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g-----~l~GiIt~~dil~~~~~ 223 (505)
....+....|.+ +++++.+++++.+++++|.+++++++||+|+ | +++|+||++||++.+..
T Consensus 100 ~~~~~~~~~~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~ 170 (179)
T d2ooxe1 100 LLGLREVERKIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM 170 (179)
T ss_dssp HHHHHHHHHHTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred hhhhcccceeeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence 011234456887 9999999999999999999999999999985 4 79999999999998753
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=99.26 E-value=1.8e-11 Score=130.36 Aligned_cols=169 Identities=20% Similarity=0.183 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHhCCCceEEEccc---CCHHHHHHHHHcCCCEEEEccCCcc--eeecccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNV---VTMYQAQNLIEAGVDGLRVGMGSGS--ICTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V---~t~e~a~~l~~aGad~I~v~~g~g~--~~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
+.+...+.++|+..++.||.+|-+ .-...+..+.++|+|+|.++.+.|+ ..........|.|+...|.++.+.+.
T Consensus 583 edL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~ 662 (809)
T d1ofda2 583 EDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLM 662 (809)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHH
Confidence 677888889999888889888644 2344555566899999999743332 22223355678999999999998877
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++.+|++||++|+.|+++|++||||+|.+||.++.+.=|- .+-.
T Consensus 663 ~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi------------------------------~~r~ 712 (809)
T d1ofda2 663 ENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCI------------------------------MARV 712 (809)
T ss_dssp HTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCC------------------------------CCCC
T ss_pred HcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCH------------------------------HhHh
Confidence 65 4999999999999999999999999999999875432111 0112
Q ss_pred ccccccccceeeeec-----cCC---chhhHHHHHHHHHHHHhhccCCCCHHHHHH
Q 010640 425 KAKLKIAQGVVGAVA-----DKG---SVLKFIPYTMQAVKQGFQDLGASSLQSAHD 472 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~-----~~~---~~~~~~~~l~~~l~~~m~~~G~~~~~~l~~ 472 (505)
|+++.+|-||.++.| +.+ .|.+++..+..++|..|..+|.+++.||..
T Consensus 713 Ch~n~CP~GIaTqd~~l~~~~~~~~~~v~n~~~~~~~e~~~~~a~~G~~s~~elvG 768 (809)
T d1ofda2 713 CHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEVRSLLAHLGYRSLDDIIG 768 (809)
T ss_dssp GGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCGGGTTT
T ss_pred hCCCCCCCcccCCCHHHHhhCcCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhcC
Confidence 455566777666553 222 478889999999999999999999999843
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.22 E-value=4.8e-11 Score=110.64 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC--CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG--NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g--~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
..+..+.+.++|++.+.++.... ......+.++.+++... ..++..++.+.+++..+.+.|+|+|.++.+++.....
T Consensus 77 ~~~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~ 155 (222)
T d1y0ea_ 77 TSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAP-NVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQ 155 (222)
T ss_dssp SHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTST
T ss_pred cHHHHHhHHHcCCCEEEeeccccccccchHHHHHHHHHHhCC-ceEEeecCCCHHHHHHHHHcCCCeEEEeccCCccccc
Confidence 45667778889999998876432 22345677777777763 4455668999999999999999999776443221111
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
...+....+..+.+..+..++|||++|||.|++|+.+++++|||+|++||+|..
T Consensus 156 -----~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r 209 (222)
T d1y0ea_ 156 -----GQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR 209 (222)
T ss_dssp -----TCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred -----CccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcC
Confidence 112333334445555566789999999999999999999999999999999853
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=99.20 E-value=2.5e-11 Score=128.75 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEcccC---CHHHHHHHHHcCCCEEEEccCCcc--eeecccccccCcChHHHHHHHHHHHh
Q 010640 274 SFQIEMIKYAKKTYPELDVIGGNVV---TMYQAQNLIEAGVDGLRVGMGSGS--ICTTQEVCAVGRGQATAVYKVSSIAA 348 (505)
Q Consensus 274 ~~~~~~i~~l~~~~~~~~Vi~g~V~---t~e~a~~l~~aGad~I~v~~g~g~--~~~~~~~~g~g~p~~~~l~~v~~~~~ 348 (505)
..+...+.++|+..++.||.+|-+. -...+..+.++|+|+|.++.+.|+ ..........|.|+..++.++.+.+.
T Consensus 556 edL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~ 635 (771)
T d1ea0a2 556 EDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLT 635 (771)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHH
Confidence 5678888888988778899887543 234455567899999999643332 22223355678999999999999887
Q ss_pred hc----CCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhcccccccccc
Q 010640 349 QS----GVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGD 424 (505)
Q Consensus 349 ~~----~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~ 424 (505)
.. ++.+|++||++++.|+++|++||||+|.+||.++.+.=|- -+-.
T Consensus 636 ~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi------------------------------~~r~ 685 (771)
T d1ea0a2 636 LNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCI------------------------------MVRQ 685 (771)
T ss_dssp TTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCC------------------------------CCCC
T ss_pred HcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCH------------------------------Hhhh
Confidence 65 3999999999999999999999999999999875321110 0112
Q ss_pred ccccccccceeeeecc--------CCchhhHHHHHHHHHHHHhhccCCCCHHHHH
Q 010640 425 KAKLKIAQGVVGAVAD--------KGSVLKFIPYTMQAVKQGFQDLGASSLQSAH 471 (505)
Q Consensus 425 ~~~~~~~~g~~~~~~~--------~~~~~~~~~~l~~~l~~~m~~~G~~~~~~l~ 471 (505)
|+++.+|-||.++.|. ...+.+++..+..++|..|..+|.+++.||-
T Consensus 686 Ch~~~CP~GIaTqd~~lr~~~~~~~~~v~n~~~~~~~e~~~~~~~~G~~s~~~lv 740 (771)
T d1ea0a2 686 CHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVI 740 (771)
T ss_dssp TTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHHHHHHHHHHHTCSCSGGGT
T ss_pred ccCCCCCCeeecCCHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHhc
Confidence 3444455555544421 1257788999999999999999999999984
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.19 E-value=4.3e-11 Score=111.67 Aligned_cols=127 Identities=17% Similarity=0.317 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC---CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG---NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g---~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
..+....+...|+|.+.+..... .....++.++.++..++. .++.+++.|.++++.+.++|+|+|.+.+.++....
T Consensus 87 ~~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~ 165 (230)
T d1yxya1 87 TMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPN-QLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS 165 (230)
T ss_dssp SHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTT-CEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTS
T ss_pred hHHHHHHHHhcCCCEEEEecccccccchhhHHHHHHHHHhcCCC-ceEecCCCCHHHHHHHHhcCCCEEEeecccccccc
Confidence 45667778889999998876443 234567888888888744 45556899999999999999999987643221111
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
. +.. +... .+...+...++|||++|||+|++|+.+++++|||+|++||++.
T Consensus 166 ~----~~~-~~~~---~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~ 216 (230)
T d1yxya1 166 R----QEA-GPDV---ALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT 216 (230)
T ss_dssp C----CSS-SCCH---HHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred c----ccc-hHHH---HHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc
Confidence 1 011 1112 2233334468999999999999999999999999999999874
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.18 E-value=3.1e-10 Score=110.99 Aligned_cols=137 Identities=20% Similarity=0.270 Sum_probs=90.9
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc--------------hhHHHHHHHHHHhCCCceEEEc---ccCCH-HHHHHHHH
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS--------------SFQIEMIKYAKKTYPELDVIGG---NVVTM-YQAQNLIE 308 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~--------------~~~~~~i~~l~~~~~~~~Vi~g---~V~t~-e~a~~l~~ 308 (505)
+++.+.++.+.+.|+|+++++.++.+. ..+.+.++.+++.. ++||++| ...+. +.++.+.+
T Consensus 116 ~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~-~~pv~vKl~~~~~~~~~i~~~~~~ 194 (312)
T d1gtea2 116 NDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAV-QIPFFAKLTPNVTDIVSIARAAKE 194 (312)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhcc-CCceeecccccchhHHHHHHHHHH
Confidence 346667777778899999998765321 23456667777775 7899886 33443 44777889
Q ss_pred cCCCEEEEccCCccee---ec------------ccccccCcCh--HHHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHH
Q 010640 309 AGVDGLRVGMGSGSIC---TT------------QEVCAVGRGQ--ATAVYKVSSIAAQS-GVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 309 aGad~I~v~~g~g~~~---~~------------~~~~g~g~p~--~~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal 370 (505)
+|+|++.+.+.-++.. .. ....|...+. ..++..+++..+.. ++|||+.|||.++.|+.+++
T Consensus 195 ~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l 274 (312)
T d1gtea2 195 GGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFL 274 (312)
T ss_dssp HTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHH
T ss_pred hcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHH
Confidence 9999998864311100 00 0011111121 22344444444434 49999999999999999999
Q ss_pred HhCCCEEEeccccc
Q 010640 371 VLGASTVMMGSFLA 384 (505)
Q Consensus 371 ~lGA~~V~~G~~f~ 384 (505)
.+|||+||+||.|.
T Consensus 275 ~aGA~~Vqv~ta~~ 288 (312)
T d1gtea2 275 HSGASVLQVCSAVQ 288 (312)
T ss_dssp HTTCSEEEESHHHH
T ss_pred HcCCCeeEECHhhh
Confidence 99999999999874
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.15 E-value=1e-10 Score=114.35 Aligned_cols=169 Identities=15% Similarity=0.178 Sum_probs=111.7
Q ss_pred ccHHHHHHHHHHcC-ccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEcccC--CH-H---HHHHHHHc
Q 010640 247 ESDKERLEHLVKAG-VNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGGNVV--TM-Y---QAQNLIEA 309 (505)
Q Consensus 247 ~~~~e~~~~lieaG-ad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g~V~--t~-e---~a~~l~~a 309 (505)
.++.+.++.+.+++ +|+++++.++.+. ....+.++++++.. +.|+++|-.. +. + .++.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~-~~pv~vKl~p~~~~~~~~~~~~~~~~~ 184 (311)
T d1juba_ 106 AENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYFDLVHFDIMAEILNQF 184 (311)
T ss_dssp HHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCCSHHHHHHHHHHHTTS
T ss_pred chhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhccc-ccceeecccccchhhHHHHHHHHHHhh
Confidence 44556666666665 8999998765322 23455566666665 7888886443 22 2 24445567
Q ss_pred CCCEEEEccCCcc---eeec------c---cccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhC
Q 010640 310 GVDGLRVGMGSGS---ICTT------Q---EVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLG 373 (505)
Q Consensus 310 Gad~I~v~~g~g~---~~~~------~---~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lG 373 (505)
|++++...+.... .... . ...|...+. ..++..+.+.++.. ++|||++|||.++.|+.+++.+|
T Consensus 185 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aG 264 (311)
T d1juba_ 185 PLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCG 264 (311)
T ss_dssp CCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHT
T ss_pred ccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcC
Confidence 7887765432111 0000 0 112222222 23455555555444 49999999999999999999999
Q ss_pred CCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHH
Q 010640 374 ASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQ 453 (505)
Q Consensus 374 A~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 453 (505)
|++||++|.|.. +| ..++..+..
T Consensus 265 A~~Vql~tal~~----------------------------------------------~G-----------p~~i~~i~~ 287 (311)
T d1juba_ 265 ATMLQIGTALHK----------------------------------------------EG-----------PAIFDRIIK 287 (311)
T ss_dssp CSEEEECHHHHH----------------------------------------------HC-----------THHHHHHHH
T ss_pred CCceeeeHhhHh----------------------------------------------cC-----------hHHHHHHHH
Confidence 999999998731 12 156789999
Q ss_pred HHHHHhhccCCCCHHHHHHh
Q 010640 454 AVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 454 ~l~~~m~~~G~~~~~~l~~~ 473 (505)
+|+..|...|++++.||+.+
T Consensus 288 ~L~~~m~~~G~~si~e~~G~ 307 (311)
T d1juba_ 288 ELEEIMNQKGYQSIADFHGK 307 (311)
T ss_dssp HHHHHHHHHTCCSGGGTTTC
T ss_pred HHHHHHHHcCCCCHHHhcCc
Confidence 99999999999999999865
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.08 E-value=1.6e-09 Score=105.52 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=111.9
Q ss_pred HHHHHHHHHH-cCccEEEEeCCCCCc-----------hhHHHHHHHHHHhCCCceEEEc---cc-CCHHHHHHHHHcCCC
Q 010640 249 DKERLEHLVK-AGVNVVVLDSSQGNS-----------SFQIEMIKYAKKTYPELDVIGG---NV-VTMYQAQNLIEAGVD 312 (505)
Q Consensus 249 ~~e~~~~lie-aGad~I~i~~~~g~~-----------~~~~~~i~~l~~~~~~~~Vi~g---~V-~t~e~a~~l~~aGad 312 (505)
..+.++.+.+ +|+|.+.++.++.+. ....+.+..+++.. +.|+.++ .+ ...+.++.+.++|++
T Consensus 113 ~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~p~~vkl~~~~~~~~~~a~~~~~~~~~ 191 (311)
T d1ep3a_ 113 YVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVS-KVPLYVKLSPNVTDIVPIAKAVEAAGAD 191 (311)
T ss_dssp HHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHC-SSCEEEEECSCSSCSHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHhcc-CCCeeeeecccccchHHHHHHHHHhhhh
Confidence 4444555544 489999998765321 12333444455554 6777664 22 356778888899999
Q ss_pred EEEEccCCcceee---------ccccccc-CcC-hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 313 GLRVGMGSGSICT---------TQEVCAV-GRG-QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 313 ~I~v~~g~g~~~~---------~~~~~g~-g~p-~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
++.+.+..+.... .....+. |.+ ...++..+.+.++..++|||+.|||.++.|+.+++.+|||+||+||
T Consensus 192 ~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~ 271 (311)
T d1ep3a_ 192 GLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGT 271 (311)
T ss_dssp EEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECT
T ss_pred eeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHHcCCCEEEecH
Confidence 9988642211100 0001111 111 1234555666666678999999999999999999999999999999
Q ss_pred cccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhc
Q 010640 382 FLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQD 461 (505)
Q Consensus 382 ~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~ 461 (505)
.+.. . + -++.++..+|+..|..
T Consensus 272 ~~~~-------------------------------------------------------~-P--~i~~~I~~~L~~~m~~ 293 (311)
T d1ep3a_ 272 ANFA-------------------------------------------------------D-P--FVCPKIIDKLPELMDQ 293 (311)
T ss_dssp HHHH-------------------------------------------------------C-T--THHHHHHHHHHHHHHH
T ss_pred HHHc-------------------------------------------------------C-C--hHHHHHHHHHHHHHHH
Confidence 7631 0 1 2566788999999999
Q ss_pred cCCCCHHHHHHhh
Q 010640 462 LGASSLQSAHDLL 474 (505)
Q Consensus 462 ~G~~~~~~l~~~~ 474 (505)
.|.++++||..++
T Consensus 294 ~g~~si~e~~g~~ 306 (311)
T d1ep3a_ 294 YRIESLESLIQEV 306 (311)
T ss_dssp TTCSCHHHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 9999999999874
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=99.04 E-value=3.3e-09 Score=96.70 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=92.3
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
.++..+.++.+++.|+.++++..... ...+.++.+++.+|++.+.+|+|.+.++++.+.++|+++++-. ..
T Consensus 25 ~~~~~~~~~al~~~Gi~~iEitl~~~---~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP------~~ 95 (212)
T d1vhca_ 25 ADDILPLADTLAKNGLSVAEITFRSE---AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP------GL 95 (212)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS------SC
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEECC------CC
Confidence 45677889999999999999987543 5678889999999999999999999999999999999999421 11
Q ss_pred cccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
-.++.++|.+.++|.+. |+.|+.++..|+.+||+.|-+
T Consensus 96 --------------~~~v~~~a~~~~i~~iP--Gv~TpsEi~~A~~~G~~~vK~ 133 (212)
T d1vhca_ 96 --------------NPKIVKLCQDLNFPITP--GVNNPMAIEIALEMGISAVKF 133 (212)
T ss_dssp --------------CHHHHHHHHHTTCCEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred --------------CHHHHHHHHhcCCCccC--CcCCHHHHHHHHHCCCCEEEE
Confidence 02456777788999999 999999999999999998864
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.7e-08 Score=91.89 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=93.9
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
..++..+.++.+++.|+.++++..... ...+.++.+++.+|++.+.+|+|.+.++++.+.++|+++++-. +
T Consensus 25 ~~~~a~~~~~al~~~Gi~~iEitl~tp---~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP------~ 95 (213)
T d1wbha1 25 KLEHAVPMAKALVAGGVRVLNVTLRTE---CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP------G 95 (213)
T ss_dssp SGGGHHHHHHHHHHTTCCEEEEESCST---THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES------S
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECC------C
Confidence 456688999999999999999987543 5688999999999999999999999999999999999999432 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. -.++.+++.+.++|+|. |+.|+.++..|+.+||+.|-+
T Consensus 96 ~--------------~~~v~~~a~~~~i~~iP--Gv~TpsEi~~A~~~G~~~vKl 134 (213)
T d1wbha1 96 L--------------TEPLLKAATEGTIPLIP--GISTVSELMLGMDYGLKEFKF 134 (213)
T ss_dssp C--------------CHHHHHHHHHSSSCEEE--EESSHHHHHHHHHTTCCEEEE
T ss_pred C--------------CHHHHHHHHhcCCCccC--CcCCHHHHHHHHHCCCCEEEe
Confidence 1 02456777788999999 999999999999999999864
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=1.7e-08 Score=100.53 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCch---------hHHHHHHHH---HHhC---CCceEEEcccC--CH----HHHHHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSS---------FQIEMIKYA---KKTY---PELDVIGGNVV--TM----YQAQNLI 307 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~---------~~~~~i~~l---~~~~---~~~~Vi~g~V~--t~----e~a~~l~ 307 (505)
+...+....+.++|+++++.++.+.. ......... .... .++|+++|--. +. +.++.+.
T Consensus 165 ~~~~~~~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~ 244 (367)
T d1d3ga_ 165 DYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVK 244 (367)
T ss_dssp HHHHHHHHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhhcccccCCccccccCcccchhhhhhhHHHHH
Confidence 33444555677999999998765431 111111111 1111 14688886332 32 2467788
Q ss_pred HcCCCEEEEccCCcc----eeec-----ccccccCcC--hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCE
Q 010640 308 EAGVDGLRVGMGSGS----ICTT-----QEVCAVGRG--QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAST 376 (505)
Q Consensus 308 ~aGad~I~v~~g~g~----~~~~-----~~~~g~g~p--~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~ 376 (505)
++|++++...+.... .... ....|.... .+..+..+++... .++|||+.|||.+++|+.+.+.+||++
T Consensus 245 ~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~-~~ipIig~GGI~s~~Da~e~i~aGAs~ 323 (367)
T d1d3ga_ 245 ELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQ-GRVPIIGVGGVSSGQDALEKIRAGASL 323 (367)
T ss_dssp HHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTT-TCSCEEEESSCCSHHHHHHHHHHTCSE
T ss_pred hhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhC-CCccEEEECCCCCHHHHHHHHHcCCCH
Confidence 899999988642110 0000 001111111 2223444443332 369999999999999999999999999
Q ss_pred EEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHH
Q 010640 377 VMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVK 456 (505)
Q Consensus 377 V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~ 456 (505)
||+||.|.. +| -.++.++..+|+
T Consensus 324 VQi~Ta~~~----------------------------------------------~G-----------p~ii~~I~~~L~ 346 (367)
T d1d3ga_ 324 VQLYTALTF----------------------------------------------WG-----------PPVVGKVKRELE 346 (367)
T ss_dssp EEESHHHHH----------------------------------------------HC-----------THHHHHHHHHHH
T ss_pred HHhhHHHHh----------------------------------------------cC-----------cHHHHHHHHHHH
Confidence 999998631 11 167789999999
Q ss_pred HHhhccCCCCHHHHHHh
Q 010640 457 QGFQDLGASSLQSAHDL 473 (505)
Q Consensus 457 ~~m~~~G~~~~~~l~~~ 473 (505)
..|..-|.++++||+..
T Consensus 347 ~~l~~~G~~si~dl~G~ 363 (367)
T d1d3ga_ 347 ALLKEQGFGGVTDAIGA 363 (367)
T ss_dssp HHHHHTTCSSHHHHTTG
T ss_pred HHHHHcCCCCHHHhcCh
Confidence 99999999999999865
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.88 E-value=8.4e-09 Score=104.16 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCCEEEEccCCccee----ecccccccCcChH--HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHH
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSIC----TTQEVCAVGRGQA--TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~----~~~~~~g~g~p~~--~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~ 371 (505)
.+.+..+.+.|+|++.+.+...... ......|...+.+ .++..+.+..+.. ++|||+.|||.+++|+.+.+.
T Consensus 283 ~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~ 362 (409)
T d1tv5a1 283 KEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE 362 (409)
T ss_dssp HHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH
Confidence 4456777789999999875322111 1111222222222 2444455554444 499999999999999999999
Q ss_pred hCCCEEEecccccCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHH
Q 010640 372 LGASTVMMGSFLAGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYT 451 (505)
Q Consensus 372 lGA~~V~~G~~f~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 451 (505)
+||++||++|.|. | +|. .++.++
T Consensus 363 AGAs~VQv~T~li-------------------~---------------------------~Gp-----------~~v~~I 385 (409)
T d1tv5a1 363 AGASVCQLYSCLV-------------------F---------------------------NGM-----------KSAVQI 385 (409)
T ss_dssp TTEEEEEESHHHH-------------------H---------------------------HGG-----------GHHHHH
T ss_pred cCCCHHhhhhHHH-------------------h---------------------------cCh-----------HHHHHH
Confidence 9999999999873 1 121 567789
Q ss_pred HHHHHHHhhccCCCCHHHHHHh
Q 010640 452 MQAVKQGFQDLGASSLQSAHDL 473 (505)
Q Consensus 452 ~~~l~~~m~~~G~~~~~~l~~~ 473 (505)
.++|...|..-|.++++|++.+
T Consensus 386 ~~~L~~~l~~~g~~~i~e~iG~ 407 (409)
T d1tv5a1 386 KRELNHLLYQRGYYNLKEAIGR 407 (409)
T ss_dssp HHHHHHHHHHHTCSSSGGGTTT
T ss_pred HHHHHHHHHHcCCCCHHHhcCC
Confidence 9999999999999999998754
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=98.84 E-value=2.1e-08 Score=91.41 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=93.7
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
..++..+.++.+++.|+.++++..... ...+.++.+++.+|++.|.+|+|.+.++++.+.++|+++++-. +
T Consensus 27 ~~~~a~~~~~al~~~Gi~~iEitl~~p---~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP------~ 97 (216)
T d1mxsa_ 27 REEDILPLADALAAGGIRTLEVTLRSQ---HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP------G 97 (216)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEESSST---HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS------S
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECC------C
Confidence 456688999999999999999977533 5688999999999999999999999999999999999999421 1
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. -.++.+++.+.++|.|. |+.|+.++.+|+.+||+.|-+
T Consensus 98 ~--------------~~~v~~~a~~~~i~~iP--Gv~TpsEi~~A~~~G~~~vKl 136 (216)
T d1mxsa_ 98 I--------------TEDILEAGVDSEIPLLP--GISTPSEIMMGYALGYRRFKL 136 (216)
T ss_dssp C--------------CHHHHHHHHHCSSCEEC--EECSHHHHHHHHTTTCCEEEE
T ss_pred C--------------cHHHHHHHHhcCCCccC--CcCCHHHHHHHHHCCCCEEEe
Confidence 1 12556777888999999 999999999999999999864
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.62 E-value=9e-08 Score=93.02 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=99.3
Q ss_pred HHHcCccEEEEeCCCCCc----------hhHHHHHHHHHHhCCCceEEEccc--CCHHH----HHHHHHc-CCCEEEEcc
Q 010640 256 LVKAGVNVVVLDSSQGNS----------SFQIEMIKYAKKTYPELDVIGGNV--VTMYQ----AQNLIEA-GVDGLRVGM 318 (505)
Q Consensus 256 lieaGad~I~i~~~~g~~----------~~~~~~i~~l~~~~~~~~Vi~g~V--~t~e~----a~~l~~a-Gad~I~v~~ 318 (505)
..+.++|+++++.++.+. ....+.++.+++.. +.|++++-- .+... +..+.+. +++++..-+
T Consensus 116 ~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~n 194 (312)
T d2b4ga1 116 ITKEKGTILELNLSCPNVPGKPQVGYDFDTTRTYLQKVSEAY-GLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVN 194 (312)
T ss_dssp HHHHHCCEEEEECCCCCSTTCCCGGGCHHHHHHHHHHHHHHH-CSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECC
T ss_pred hhhhcccceeeccccCCcCcchhhhccHHHHHHHHHHhhccc-cccceeccccccchhHHHHHHHHHHhhhhhhhhhhcc
Confidence 355689999998865432 23445566666654 678777532 23322 1222222 333443222
Q ss_pred CCcc---eeec---------ccccccCcChH--HHHHHHHHHHhhc-CCcEEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 319 GSGS---ICTT---------QEVCAVGRGQA--TAVYKVSSIAAQS-GVPVIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 319 g~g~---~~~~---------~~~~g~g~p~~--~~l~~v~~~~~~~-~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
.-+. .... ....|...+.+ .++..+.+..+.. +.|||+.|||.++.|+.+.+.+||++||++|.|
T Consensus 195 t~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal 274 (312)
T d2b4ga1 195 SIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTAL 274 (312)
T ss_dssp CEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHH
T ss_pred cccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhh
Confidence 1110 0000 01122222322 2444555544443 478999999999999999999999999999987
Q ss_pred cCCCCCCccceeecCeEeeeecccCcHHHHhccccccccccccccccccceeeeeccCCchhhHHHHHHHHHHHHhhccC
Q 010640 384 AGSTEAPGAYVYQNGRRVKKYRGMGSLEAMTKGSDQRYLGDKAKLKIAQGVVGAVADKGSVLKFIPYTMQAVKQGFQDLG 463 (505)
Q Consensus 384 ~~~~Es~~~~~~~~~~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~m~~~G 463 (505)
.. +| + .++.++..+|+..|...|
T Consensus 275 ~~----------------------------------------------~G---------p--~~i~~i~~~L~~~l~~~G 297 (312)
T d2b4ga1 275 HD----------------------------------------------EG---------P--IIFARLNKELQEIMTNKG 297 (312)
T ss_dssp HH----------------------------------------------HC---------T--THHHHHHHHHHHHHHHHT
T ss_pred Hh----------------------------------------------cC---------c--HHHHHHHHHHHHHHHHcC
Confidence 31 12 1 677899999999999999
Q ss_pred CCCHHHHHHhh
Q 010640 464 ASSLQSAHDLL 474 (505)
Q Consensus 464 ~~~~~~l~~~~ 474 (505)
.++++|++.++
T Consensus 298 ~~si~e~~G~~ 308 (312)
T d2b4ga1 298 YKTLDEFRGRV 308 (312)
T ss_dssp CCSGGGTTTCC
T ss_pred CCCHHHHcCee
Confidence 99999998763
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=5e-07 Score=81.49 Aligned_cols=110 Identities=19% Similarity=0.239 Sum_probs=88.4
Q ss_pred CCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcce
Q 010640 245 TRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 245 ~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
+.++....++.+++.|++++++..... ...+.++.+++.+ +++.+.+|+|.+.++++.+.++|+++++-.
T Consensus 19 ~~~~a~~~~~al~~~Gi~~iEitlr~p---~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP------ 89 (202)
T d1wa3a1 19 SVEEAKEKALAVFEGGVHLIEITFTVP---DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSP------ 89 (202)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEETTST---THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEECS------
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc---cHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeCC------
Confidence 345577889999999999999977644 4566777776543 688899999999999999999999999421
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
. .. .++.+++.+.++|++. |+.|+.++.+|+.+||+.+-+
T Consensus 90 ~---------~~-----~~v~~~~~~~~i~~iP--Gv~TpsEi~~A~~~G~~~lK~ 129 (202)
T d1wa3a1 90 H---------LD-----EEISQFCKEKGVFYMP--GVMTPTELVKAMKLGHTILKL 129 (202)
T ss_dssp S---------CC-----HHHHHHHHHHTCEEEC--EECSHHHHHHHHHTTCCEEEE
T ss_pred C---------Cc-----HHHHHHHHhcCCceeC--CcCcHHHHHHHHHCCCCEEEe
Confidence 1 11 2455667778899999 999999999999999999976
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.51 E-value=2.1e-07 Score=78.46 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCC--CCCccCC-CCcce
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNL--GKGTVGP-DGKWM 238 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~--~~~~~d~-~~~l~ 238 (505)
..||+++|++ +++++++++++.+|++.|.+++++.+||+|+ |+++|+||..|+++....... ..+..+. ...+.
T Consensus 4 ~~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~ 81 (132)
T d2yzia1 4 KAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLI 81 (132)
T ss_dssp TSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCC
T ss_pred CCcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeeccccccc
Confidence 4589999999 9999999999999999999999999999999 999999999999986543221 0001111 11111
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEe
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLD 267 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~ 267 (505)
. +.......+.++.+.+.+...+.++
T Consensus 82 -~--v~~~~~~~~~~~~m~~~~~~~l~V~ 107 (132)
T d2yzia1 82 -T--ANVNTPLGEVLRKMAEHRIKHILIE 107 (132)
T ss_dssp -E--EETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -c--cCcchHHHHHHHHHHHcCCCEEEEE
Confidence 1 2223346666777777777777664
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.44 E-value=8.4e-07 Score=74.00 Aligned_cols=102 Identities=13% Similarity=0.210 Sum_probs=72.8
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCC-CccCC-CCcceEE
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGK-GTVGP-DGKWMVG 240 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~-~~~d~-~~~l~v~ 240 (505)
+..|+++|++ +++++.+++++.+++++|.+++++.+||+|+|+++|+||..|+++......... +..+. .... .
T Consensus 3 ~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~-~- 78 (127)
T d2ef7a1 3 EEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKAEEFMTASL-I- 78 (127)
T ss_dssp CCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECC-C-
T ss_pred ccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecccchhhhcchhHHHHHHHhhccccchhhhhhhhhc-c-
Confidence 3568999999 999999999999999999999999999999999999999999998765332200 00110 0000 0
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCC
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSS 269 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~ 269 (505)
.+.......+.++.+.+.++..+.+...
T Consensus 79 -~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 106 (127)
T d2ef7a1 79 -TIREDSPITGALALMRQFNIRHLPVVDD 106 (127)
T ss_dssp -CEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred -ccccccchhHHHHHHHHcCceEEEEEeC
Confidence 1222334667777777778777755433
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.39 E-value=2.3e-07 Score=77.08 Aligned_cols=100 Identities=12% Similarity=0.125 Sum_probs=57.2
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEee
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i 243 (505)
+++++|++ +++++++++++.+|+++|.++++..+||+|+ |+++|+||..|++........ ..-....+. .+
T Consensus 2 ~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~~~~---~~~~~~~~~---~v 73 (122)
T d2yzqa2 2 RVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQL---AMLVKRDVP---VV 73 (122)
T ss_dssp BHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-------------CCCBSCCC---EE
T ss_pred CcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhcccch---hhcccccee---ec
Confidence 47889999 9999999999999999999999999999999 999999999999986543321 110111111 12
Q ss_pred cCCccHHHHHHHHHHcCccEEEEeCCCCC
Q 010640 244 GTRESDKERLEHLVKAGVNVVVLDSSQGN 272 (505)
Q Consensus 244 ~~~~~~~e~~~~lieaGad~I~i~~~~g~ 272 (505)
.......+.++.+.+.+.+.+.+-..+|.
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~lpVvd~~~~ 102 (122)
T d2yzqa2 74 KENDTLKKAAKLMLEYDYRRVVVVDSKGK 102 (122)
T ss_dssp ETTSBHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred chhhHHHHHHHHHHHcCcEEEEEEeCCCE
Confidence 23345777788888888887755434443
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.36 E-value=2e-07 Score=80.67 Aligned_cols=58 Identities=17% Similarity=0.087 Sum_probs=54.3
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+.++.++|++ +++++++++++.+|+++|.+++++++||+|+ |+++|+||..|+++...
T Consensus 3 ~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~ 61 (156)
T d2yzqa1 3 GVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSE 61 (156)
T ss_dssp GCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGG
T ss_pred CCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhc
Confidence 4578999999 9999999999999999999999999999999 99999999999987654
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=98.34 E-value=1.3e-07 Score=79.71 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=55.6
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
.+++++|.+.++++++.+++++.+|+++|.+++.+++||+|+ |+++|+||..|+++....
T Consensus 2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~ 62 (132)
T d1yava3 2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 62 (132)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBC
T ss_pred CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhc
Confidence 468899977779999999999999999999999999999999 999999999999998754
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.33 E-value=4.4e-06 Score=78.14 Aligned_cols=134 Identities=22% Similarity=0.320 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHHcCccEEEE-eCCC--CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEccCC--
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DSSQ--GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGMGS-- 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~~~--g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~g~-- 320 (505)
.+..+.++.+.+.|++-+++ +... .......+.++.+.+.+ .+|+.+ |++.+.++++.+.++|++.++++...
T Consensus 30 gdP~~~a~~~~~~g~dei~iiDl~~~~~~~~~~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~ 108 (251)
T d1ka9f_ 30 GDPVEAARAYDEAGADELVFLDISATHEERAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 108 (251)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEecccccccchhHHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEEECchhhh
Confidence 34678888888999988766 3322 22234567778887776 688844 78999999999999999999886300
Q ss_pred ------------cc--ee-------------------------------------------ecc-cccccC-cChHHHHH
Q 010640 321 ------------GS--IC-------------------------------------------TTQ-EVCAVG-RGQATAVY 341 (505)
Q Consensus 321 ------------g~--~~-------------------------------------------~~~-~~~g~g-~p~~~~l~ 341 (505)
|. .. .+. ...|.. .|.++.+.
T Consensus 109 n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~~ 188 (251)
T d1ka9f_ 109 RPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTR 188 (251)
T ss_dssp CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHH
T ss_pred CHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHHH
Confidence 00 00 000 011111 14455554
Q ss_pred HHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 342 KVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 342 ~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+. +..++|+|++||+.+..|+.+++..|+++|.+|++|.
T Consensus 189 ~i~---~~~~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~ 228 (251)
T d1ka9f_ 189 MVA---EAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFH 228 (251)
T ss_dssp HHH---HHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHH---hhcceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHH
Confidence 443 3457999999999999999999999999999999884
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.31 E-value=1.5e-07 Score=78.29 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=52.0
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 164 VKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 164 ~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
++++++|++ +++++.+++++.+|++.|.+++++.+||+|+ |+++|+||..|++...
T Consensus 1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~ 57 (123)
T d1y5ha3 1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG 57 (123)
T ss_dssp CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTT
T ss_pred CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhh
Confidence 357899999 9999999999999999999999999999998 9999999999998653
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.31 E-value=3e-06 Score=79.41 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=93.6
Q ss_pred ccHHHHHHHHHHcCccEEEE-eCCC--CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc----
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DSSQ--GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM---- 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~~~--g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~---- 318 (505)
.+..+.++.+.+.|++.+++ +... +......+.++.+.+.. .+|+.+ |++.+.++++.+.++|++.|+++.
T Consensus 30 gdP~~~a~~~~~~g~dei~ivDld~~~~~~~~~~~~i~~i~~~~-~~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~ 108 (253)
T d1thfd_ 30 GDPVELGKFYSEIGIDELVFLDITASVEKRKTMLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKVSINTAAVE 108 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecccccCcccHHHHHHHHHhcc-CccceeecccccchhhhhHHhcCCCEEEEChHHhh
Confidence 34778899999999999866 4322 22234567777777765 788855 688999999999999999998864
Q ss_pred ------------CCccee-------------------------------------------eccc-ccccC-cChHHHHH
Q 010640 319 ------------GSGSIC-------------------------------------------TTQE-VCAVG-RGQATAVY 341 (505)
Q Consensus 319 ------------g~g~~~-------------------------------------------~~~~-~~g~g-~p~~~~l~ 341 (505)
|.-.+. .+.. ..|.. .|.++.+.
T Consensus 109 n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll~ 188 (253)
T d1thfd_ 109 NPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIR 188 (253)
T ss_dssp CTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHH
T ss_pred ChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCccccccc
Confidence 100000 0000 11111 13444443
Q ss_pred HHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 342 KVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 342 ~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+ ....++|+|++||+.+..|+.+++.+|+++|.+|++|.
T Consensus 189 ~i---~~~~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~ 228 (253)
T d1thfd_ 189 FV---RPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFH 228 (253)
T ss_dssp HH---GGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred cc---cccccceEEEecCCCCHHHHHHHHHCCCCEEEEchHHH
Confidence 33 34457999999999999999999999999999999884
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=2.2e-06 Score=83.82 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=78.9
Q ss_pred HHHHHcCccEEEEeCCCCCchh---------HHHHHHHH--------HHhCCCceEEEcccC--C----HHHHHHHHHcC
Q 010640 254 EHLVKAGVNVVVLDSSQGNSSF---------QIEMIKYA--------KKTYPELDVIGGNVV--T----MYQAQNLIEAG 310 (505)
Q Consensus 254 ~~lieaGad~I~i~~~~g~~~~---------~~~~i~~l--------~~~~~~~~Vi~g~V~--t----~e~a~~l~~aG 310 (505)
...++.++|+++++.++.+..+ ....+..+ .....++|+++|--. + .+.+..+...|
T Consensus 159 ~~~~~~~ad~iElNiScPN~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g 238 (336)
T d1f76a_ 159 MEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHN 238 (336)
T ss_dssp HHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccceeeecccchhhhcccccccchhhccchhhhhhhhhhhhhhccCcCCcccccchhhhhhhhhhhHHHHHhcC
Confidence 3445678999999987754311 11111111 111136799987332 2 23456667789
Q ss_pred CCEEEEccCCcce-ee-----cccccccCcCh--HHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 311 VDGLRVGMGSGSI-CT-----TQEVCAVGRGQ--ATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 311 ad~I~v~~g~g~~-~~-----~~~~~g~g~p~--~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
++++...+..... .. .....|.+.+. ..++..+++..+.. ++|||+.|||.+++|+.+.+.+||++||+|
T Consensus 239 ~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~ 318 (336)
T d1f76a_ 239 IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIY 318 (336)
T ss_dssp CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred ccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHH
Confidence 9999876421110 00 00111221222 23455555554444 599999999999999999999999999999
Q ss_pred cccc
Q 010640 381 SFLA 384 (505)
Q Consensus 381 ~~f~ 384 (505)
|.|.
T Consensus 319 Tal~ 322 (336)
T d1f76a_ 319 SGFI 322 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.30 E-value=4.9e-07 Score=74.75 Aligned_cols=97 Identities=21% Similarity=0.149 Sum_probs=67.9
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCC--CccC-CCCcceEEE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGK--GTVG-PDGKWMVGA 241 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~--~~~d-~~~~l~v~a 241 (505)
+++++|++ +++++++++++.+|++.|.+++...+||+++|+++|+||..||++......... +..+ ......
T Consensus 1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~--- 75 (120)
T d1pbja3 1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV--- 75 (120)
T ss_dssp CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEETTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG---
T ss_pred ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEeCCcEEEEEEeeeccccccccccccceeEeeecccccc---
Confidence 47899999 999999999999999999999999999998899999999999998755332200 0000 001111
Q ss_pred eecCCccHHHHHHHHHHcCccEEEE
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVL 266 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i 266 (505)
.+.......+.++.+.+.+...+.+
T Consensus 76 ~v~~~~~l~~a~~~m~~~~~~~l~V 100 (120)
T d1pbja3 76 TISPRATIKEAAEKMVKNVVWRLLV 100 (120)
T ss_dssp EECTTSCHHHHHHHHHHHTCSEEEE
T ss_pred cccchhHHHHHHHHHHHcCCeEEEE
Confidence 1222334556666666666666655
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=98.28 E-value=3.2e-07 Score=77.99 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=52.8
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
+++++|++ +++++.+++++.+|+++|.+++++.+||+|+ |+++|+||..|+++...
T Consensus 3 ~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~ 59 (139)
T d2o16a3 3 KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE 59 (139)
T ss_dssp BGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred EHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHH
Confidence 57899999 9999999999999999999999999999998 99999999999988754
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=98.27 E-value=2e-06 Score=70.98 Aligned_cols=99 Identities=9% Similarity=0.035 Sum_probs=72.3
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEee
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAI 243 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i 243 (505)
++.++|++ +++++.+++++.+|+++|.+++.+.+||+|+ |+++|+||..|+++....... ..-...... .+
T Consensus 2 ~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~~~~v---~~~~~~~~~---~v 73 (121)
T d1vr9a3 2 KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSV---FNKVSLPDF---FV 73 (121)
T ss_dssp BGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBS---GGGCBCTTC---CE
T ss_pred CchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhccccc---cccccCccE---EE
Confidence 47889999 9999999999999999999999999999998 999999999999876432211 100111111 12
Q ss_pred cCCccHHHHHHHHHHcCccEEEEeCCCC
Q 010640 244 GTRESDKERLEHLVKAGVNVVVLDSSQG 271 (505)
Q Consensus 244 ~~~~~~~e~~~~lieaGad~I~i~~~~g 271 (505)
.......+.++.+.+.+...+.+....|
T Consensus 74 ~~~~~l~~~~~~~~~~~~~~lpVvde~g 101 (121)
T d1vr9a3 74 HEEDNITHALLLFLEHQEPYLPVVDEEM 101 (121)
T ss_dssp ETTSBHHHHHHHHHHCCCSEEEEECTTC
T ss_pred CCCCCHHHHHHHHHhcCceeeeeECCCC
Confidence 2234577777888888888776544444
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.24 E-value=2.3e-06 Score=72.76 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=71.7
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCC--CC-CCCccCCCCcceEE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYP--NL-GKGTVGPDGKWMVG 240 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~--~~-~~~~~d~~~~l~v~ 240 (505)
+++++|++ +++++++++++.+|++.|.+++...+||+|+ |+++|+||..|+++..... .. ..+..+.-.+-++.
T Consensus 4 ~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~~~ 81 (142)
T d1pvma4 4 RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPK 81 (142)
T ss_dssp BGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSCCE
T ss_pred EHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccccc
Confidence 58899999 9999999999999999999999999999999 9999999999998754321 10 00011110011111
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCC
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQG 271 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g 271 (505)
.. ......+.++.+.+.+...+.+-...|
T Consensus 82 v~--~~~~l~~~~~~m~~~~~~~lpVvd~~g 110 (142)
T d1pvma4 82 VK--SDYDVKDVAAYLSENGLERCAVVDDPG 110 (142)
T ss_dssp EE--TTCBHHHHHHHHHHHTCSEEEEECTTC
T ss_pred cc--chhhHHHHHHHHHHcCCcEEEEEecCC
Confidence 12 233466777777788888775544334
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.23 E-value=1.2e-05 Score=75.07 Aligned_cols=133 Identities=23% Similarity=0.348 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHcCccEEEE-eCCC--CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc-----
Q 010640 248 SDKERLEHLVKAGVNVVVL-DSSQ--GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM----- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~~~--g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~----- 318 (505)
+..+.++.+.+.|++.+++ |... .......+.++.+.+.. .+|+.+ |++.+.++++.+..+|++.|.++.
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~~~~~~~~~i~~i~~~~-~~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~ 111 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPEGRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 111 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccccccccHHHHHHHHHhhc-CCcceeecccchhhhhhhHhhcCCcEEEecccccCC
Confidence 3667888888999998755 4322 22234567788887776 789865 688899999999999999998863
Q ss_pred -----------CCcce--------------eecc--------c----------------------ccccC-cChHHHHHH
Q 010640 319 -----------GSGSI--------------CTTQ--------E----------------------VCAVG-RGQATAVYK 342 (505)
Q Consensus 319 -----------g~g~~--------------~~~~--------~----------------------~~g~g-~p~~~~l~~ 342 (505)
|.-.+ ..+. . ..|.. .|.++.+..
T Consensus 112 ~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~~~~ 191 (252)
T d1h5ya_ 112 PQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRR 191 (252)
T ss_dssp THHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHH
T ss_pred cchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHHHHH
Confidence 10000 0000 0 01111 144555544
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.+ ..++|++++||+.+..|+.++..+|+++|.+|++|.
T Consensus 192 i~~---~~~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~ 230 (252)
T d1h5ya_ 192 VAD---SVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFH 230 (252)
T ss_dssp HHH---HCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHH---hcCCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHH
Confidence 433 356999999999999999999999999999999984
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.20 E-value=3.5e-06 Score=82.49 Aligned_cols=138 Identities=13% Similarity=0.135 Sum_probs=88.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc----c--
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG----N-- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g----~-- 296 (505)
++.+.++.+.++|.|.|.||.++|+ + +-.++.++.+|+.++ +.+|.+. .
T Consensus 150 ~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~ 229 (340)
T d1djqa1 150 FYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVY 229 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSS
T ss_pred HHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccccc
Confidence 3566778888999999999985532 1 245788888888873 5566543 1
Q ss_pred ---cC----CHHHHHHHHHcCCCEEEEccCCccee-ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 ---VV----TMYQAQNLIEAGVDGLRVGMGSGSIC-TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 ---V~----t~e~a~~l~~aGad~I~v~~g~g~~~-~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
.. +......+.+.|+|.+.++.+.-... .......+ .+....+..+....+..++|||+.|||.++.++.+
T Consensus 230 ~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~ 308 (340)
T d1djqa1 230 GPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRF-YQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIE 308 (340)
T ss_dssp CTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTT-CCTTTTHHHHHHHHTTCSSCEEECSCCCCHHHHHH
T ss_pred cCCCCchhhhHHHHHHHHhhccceeeeeeccccccccccccccc-CCccccHHHHHHHHHHcCCeEEEECCCCCHHHHHH
Confidence 11 12345667789999999875321100 00000000 01111122223333446799999999999999999
Q ss_pred HHHhC-CCEEEecccccCC
Q 010640 369 ALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~ 386 (505)
+|+-| ||+|++|++|+.-
T Consensus 309 ~l~~G~aDlV~~gR~~iad 327 (340)
T d1djqa1 309 IVTKGYADIIGCARPSIAD 327 (340)
T ss_dssp HHHTTSCSBEEESHHHHHC
T ss_pred HHHCCCccchhhHHHHHHC
Confidence 99999 9999999999753
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=98.20 E-value=5.4e-06 Score=80.92 Aligned_cols=132 Identities=20% Similarity=0.203 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc--------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG-------- 295 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g-------- 295 (505)
.+.+.+..+.++|.|.|+||.++|+ + +-..+.++.+++.. +-++++.
T Consensus 144 ~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~-~~~~~vr~~~~~~~~ 222 (337)
T d1z41a1 144 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD 222 (337)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST
T ss_pred HHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhh-cccceEEeccccccc
Confidence 3566677888999999999975532 1 23577888888887 4455442
Q ss_pred ccCC----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 296 NVVT----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 296 ~V~t----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
+-.+ .+.++.+.++|+|++.++.|.-.........++. .. .+....+..++||++.|||.++.++.++|+
T Consensus 223 ~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~---~~---~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~ 296 (337)
T d1z41a1 223 KGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQ---VS---FAEKIREQADMATGAVGMITDGSMAEEILQ 296 (337)
T ss_dssp TSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTT---HH---HHHHHHHHHCCEEEECSSCCSHHHHHHHHH
T ss_pred CccchhhhHHHHHHHHHcCCcccccccccccccccccCCccc---HH---HHHHHHHhcCceEEEeCCcCCHHHHHHHHH
Confidence 0112 3456778899999999975432111111111221 11 122233345799999999999999999999
Q ss_pred hC-CCEEEecccccCC
Q 010640 372 LG-ASTVMMGSFLAGS 386 (505)
Q Consensus 372 lG-A~~V~~G~~f~~~ 386 (505)
-| ||+|++|++|+.-
T Consensus 297 ~g~~D~V~~gR~~iad 312 (337)
T d1z41a1 297 NGRADLIFIGRELLRD 312 (337)
T ss_dssp TTSCSEEEECHHHHHC
T ss_pred CCCcceehhhHHHHhC
Confidence 99 9999999999753
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.16 E-value=1.2e-05 Score=74.50 Aligned_cols=132 Identities=18% Similarity=0.201 Sum_probs=90.8
Q ss_pred cHHHHHHHHHHcCccEEEEe-C--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc-----
Q 010640 248 SDKERLEHLVKAGVNVVVLD-S--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM----- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~-~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~----- 318 (505)
+..+.++.+.+.|++.+.+- . ..+.. ...+.++.+.+.+ .+|+.+ |++.+.++++.+.+.|++.+.++.
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~~~~~-~~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~ 109 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAAFGTG-DNRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET 109 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSC-CCHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred CHHHHHHHHHHcCCCEEEEEeeccccccc-chHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccchhhHHhhhc
Confidence 46788888889999998763 2 12222 2356777787776 789866 688999999999999999998863
Q ss_pred ------------------------------------------------CCcceeeccc-ccccC-cChHHHHHHHHHHHh
Q 010640 319 ------------------------------------------------GSGSICTTQE-VCAVG-RGQATAVYKVSSIAA 348 (505)
Q Consensus 319 ------------------------------------------------g~g~~~~~~~-~~g~g-~p~~~~l~~v~~~~~ 348 (505)
+.+.+..+.. ..|.. .|.+..+..+ ++
T Consensus 110 ~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i---~~ 186 (239)
T d1vzwa1 110 PEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNV---CA 186 (239)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHH---HH
T ss_pred cccchhhhccCCceeeeeeccceeeecCccceeeccccchhhhhhhhccccEEEEEeecccceecCCcchhhhhh---hh
Confidence 0000000000 11111 1445544443 34
Q ss_pred hcCCcEEecCCCCCHHHHHHHHHh---CCCEEEeccccc
Q 010640 349 QSGVPVIADGGISNSGHIVKALVL---GASTVMMGSFLA 384 (505)
Q Consensus 349 ~~~ipvIa~GGI~~~~di~kal~l---GA~~V~~G~~f~ 384 (505)
..++|+|++|||++..|+.++-.+ |+++|.+|++|.
T Consensus 187 ~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~ 225 (239)
T d1vzwa1 187 ATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALY 225 (239)
T ss_dssp TCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHH
T ss_pred ccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHH
Confidence 457999999999999999988765 999999999983
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.15 E-value=3.6e-06 Score=69.93 Aligned_cols=96 Identities=11% Similarity=0.137 Sum_probs=65.3
Q ss_pred cccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCC
Q 010640 170 MRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTR 246 (505)
Q Consensus 170 m~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~ 246 (505)
|.. +++++++++++.+|+++|.++++..+||+|+ ++++|+||..|++......... .......-.+.+. ..
T Consensus 3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~~~--~~~~~~~~~~~~~--~~ 76 (126)
T d1zfja4 3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPI--SEHMTSEHLVTAA--VG 76 (126)
T ss_dssp TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSSBT--TTSCCCSCCCCEE--TT
T ss_pred CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCCce--eeeeeccceeecC--CC
Confidence 445 7889999999999999999999999999984 6899999999998876543221 1111111111111 22
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQG 271 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g 271 (505)
....+.++.+.+.+...+.+-...|
T Consensus 77 ~~l~~a~~~m~~~~~~~lpVVd~~g 101 (126)
T d1zfja4 77 TDLETAERILHEHRIEKLPLVDNSG 101 (126)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECTTS
T ss_pred CCHHHHHHHHHhcCCcEEEEEcCCC
Confidence 3466667777778888775543333
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.12 E-value=5.9e-06 Score=68.87 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=72.4
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEe--eC-CeeeeEEeechhhhhhcCCCCCCCc-cCCCCcceEE
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLE--KD-GERLDVVTREDVERLKGYPNLGKGT-VGPDGKWMVG 240 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVv--d~-g~l~GiIt~~dil~~~~~~~~~~~~-~d~~~~l~v~ 240 (505)
+++++|++ +++++++++++.++++.|.+++...+||+ |+ ++++|++|..|+.+........... ........
T Consensus 2 ~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~~~~~~-- 77 (131)
T d2riha1 2 RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANSPI-- 77 (131)
T ss_dssp BGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBCCC--
T ss_pred CHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccccccce--
Confidence 57899999 99999999999999999999999999999 44 8999999999999876543321001 11001111
Q ss_pred EeecCCccHHHHHHHHHHcCccEEEEeCCCC
Q 010640 241 AAIGTRESDKERLEHLVKAGVNVVVLDSSQG 271 (505)
Q Consensus 241 a~i~~~~~~~e~~~~lieaGad~I~i~~~~g 271 (505)
.+.......+.++.+.+.+...+.+...+|
T Consensus 78 -~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g 107 (131)
T d2riha1 78 -TVLDTDPVHVAAEKMRRHNIRHVVVVNKNG 107 (131)
T ss_dssp -EEETTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred -eEeeecchHHHHHHHHHCCeEEEEEEcCCC
Confidence 122334466777777778887776644444
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.10 E-value=7.2e-06 Score=79.78 Aligned_cols=137 Identities=16% Similarity=0.179 Sum_probs=89.7
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCC-CceEEEc-------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYP-ELDVIGG------- 295 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~-~~~Vi~g------- 295 (505)
++.+.++.+.++|.|.|+||..+|+ + +-.++.++.+|+.++ +.+|.+.
T Consensus 142 ~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~ 221 (330)
T d1ps9a1 142 NFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV 221 (330)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS
T ss_pred HHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccc
Confidence 3566677888999999999875432 1 245778888888874 5565542
Q ss_pred -ccCC----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH
Q 010640 296 -NVVT----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKAL 370 (505)
Q Consensus 296 -~V~t----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal 370 (505)
.-.+ .+.++.+.++|+|++.++.+.-........ ...|.......+.+.....++|||+.|||.++.++.++|
T Consensus 222 ~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l 299 (330)
T d1ps9a1 222 EDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIA--TPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDIL 299 (330)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSS--TTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccC--CCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHH
Confidence 1113 445577778999999886432111111100 011111111122333444579999999999999999999
Q ss_pred HhC-CCEEEecccccCC
Q 010640 371 VLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 371 ~lG-A~~V~~G~~f~~~ 386 (505)
+-| ||+|++|++|+.-
T Consensus 300 ~~g~~D~V~~gR~~iad 316 (330)
T d1ps9a1 300 SRGDADMVSMARPFLAD 316 (330)
T ss_dssp HTTSCSEEEESTHHHHC
T ss_pred HCCCcchhHhhHHHHhC
Confidence 999 9999999999753
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=98.08 E-value=1.6e-06 Score=72.28 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=50.2
Q ss_pred ccccccccC-CCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhh
Q 010640 165 KIFDYMRDC-SSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLK 221 (505)
Q Consensus 165 ~v~~im~~~-~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~ 221 (505)
+++++|+.. .+++++++++++.+|+++|.++++..+||+|+|+++|++|..|+++..
T Consensus 3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~~~~vGiit~~Di~~~~ 60 (127)
T d2rc3a1 3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKS 60 (127)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHG
T ss_pred cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEECCeEEEEEEccchhhhh
Confidence 467777631 278999999999999999999999999999989999999999998764
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.05 E-value=1.7e-05 Score=73.12 Aligned_cols=174 Identities=11% Similarity=0.112 Sum_probs=113.6
Q ss_pred HHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE
Q 010640 185 LGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV 263 (505)
Q Consensus 185 l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~ 263 (505)
..+..+ +.+.+...+-|..| ..+-| +.+|+........ +++-...-.. ...++......|+|+
T Consensus 65 ~~~~a~-~~~~gA~aiSVLTd~~~F~G--s~~dl~~v~~~~~-----------~PiLrKDFIi--d~~QI~ea~~~GADa 128 (247)
T d1a53a_ 65 PIEYSK-FMERYAVGLSILTEEKYFNG--SYETLRKIASSVS-----------IPILMKDFIV--KESQIDDAYNLGADT 128 (247)
T ss_dssp HHHHHH-HHTTTCSEEEEECCCTTTCC--CHHHHHHHHHHCC-----------SCEEEESCCC--SHHHHHHHHHHTCSE
T ss_pred HHHHHH-HHHhCCCeEEEecCcccccc--chHHHHHHHhccc-----------cceeeccccc--ChHHHHHHHHhhcch
Confidence 445444 55678888888877 67777 6677765433211 1221121111 234556677789999
Q ss_pred EEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHH
Q 010640 264 VVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKV 343 (505)
Q Consensus 264 I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v 343 (505)
+.+-.+.=......++++..++. +..+++ +|.+.++...+.++|++.|-+- .|.+..+.+.. .....+
T Consensus 129 iLLI~~~L~~~~l~~l~~~a~~l--gl~~Lv-Evh~~~El~~a~~~~a~iIGIN--------nRnL~t~~vd~-~~~~~L 196 (247)
T d1a53a_ 129 VLLIVKILTERELESLLEYARSY--GMEPLI-EINDENDLDIALRIGARFIGIN--------SRDLETLEINK-ENQRKL 196 (247)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHTT--TCCCEE-EECSHHHHHHHHHTTCSEEEEE--------SBCTTTCCBCH-HHHHHH
T ss_pred hhhhhhhccHHHHHHHHHHHHHH--hhhHHh-hcCCHHHHHHHHhCCCCeEeee--------ccChhhhhhhh-hHHHHH
Confidence 97754332223344555544444 666666 8999999999999999988442 35554444433 223334
Q ss_pred HHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCC
Q 010640 344 SSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGST 387 (505)
Q Consensus 344 ~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~ 387 (505)
....++ ++.+|+.|||.++.|+.+...+||++|.+|+.|+.+.
T Consensus 197 ~~~ip~-~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~ 239 (247)
T d1a53a_ 197 ISMIPS-NVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNP 239 (247)
T ss_dssp HHHSCT-TSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCT
T ss_pred HhhCCC-CCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCC
Confidence 444443 6899999999999999999999999999999997643
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.04 E-value=1.6e-06 Score=73.47 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=52.3
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhh
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLK 221 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~ 221 (505)
||+++|++ +++++++++++.+|+++|.+++.+++||+|+ ++++|++|..|+++..
T Consensus 3 ~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~ 58 (141)
T d3ddja1 3 PVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQL 58 (141)
T ss_dssp BHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred eeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhh
Confidence 68899999 9999999999999999999999999999999 9999999999998765
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.02 E-value=5.5e-05 Score=72.59 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHcCccEEEE-eC--CCC-C--chhHHHHHHHHHHhCCCceEEE-cccCC-----------HHHHHHHHHc
Q 010640 248 SDKERLEHLVKAGVNVVVL-DS--SQG-N--SSFQIEMIKYAKKTYPELDVIG-GNVVT-----------MYQAQNLIEA 309 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i-~~--~~g-~--~~~~~~~i~~l~~~~~~~~Vi~-g~V~t-----------~e~a~~l~~a 309 (505)
+..+.++...+.|+|-+++ |. +.+ . .....+.++.+.+.+ .+|+.+ |++.+ .+.|+.+.++
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~ 127 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVASLYFRS 127 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHHHHHHHc
Confidence 5678888899999999866 33 222 1 234677788777765 789866 56666 5779999999
Q ss_pred CCCEEEEc
Q 010640 310 GVDGLRVG 317 (505)
Q Consensus 310 Gad~I~v~ 317 (505)
|||-|.++
T Consensus 128 GadKVvI~ 135 (323)
T d1jvna1 128 GADKVSIG 135 (323)
T ss_dssp TCSEEEEC
T ss_pred CCCeEEec
Confidence 99999886
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.01 E-value=3.5e-05 Score=69.45 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=85.1
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. ++|.+- ++.|+.++..+.++|++.++
T Consensus 65 ~~~vGaGTV~---~~~~~~~a~~aGa~Fiv---SP~~~---~~v~~~a~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~vK 132 (212)
T d1vhca_ 65 DFLIAAGTVL---TAEQVVLAKSSGADFVV---TPGLN---PKIVKLCQDL--NFPITP-GVNNPMAIEIALEMGISAVK 132 (212)
T ss_dssp TCEEEEESCC---SHHHHHHHHHHTCSEEE---CSSCC---HHHHHHHHHT--TCCEEC-EECSHHHHHHHHHTTCCEEE
T ss_pred CceEeeeecc---cHHHHHHHHhhCCcEEE---CCCCC---HHHHHHHHhc--CCCccC-CcCCHHHHHHHHHCCCCEEE
Confidence 4667666422 45788889999999996 33333 3555556665 788876 69999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- .... ..+.-+..+..-. -++++++.|||. ..++.+.|++|+.++.+|+.+.
T Consensus 133 ~FP----------A~~~--gG~~~lkal~~p~--p~~~~~ptGGV~-~~N~~~yl~~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 133 FFP----------AEAS--GGVKMIKALLGPY--AQLQIMPTGGIG-LHNIRDYLAIPNIVACGGSWFV 186 (212)
T ss_dssp ETT----------TTTT--THHHHHHHHHTTT--TTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred Ecc----------cccc--chHHHHHHHhccc--cCCeEEecCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 720 0001 1112222222222 259999999995 6889999999999999999875
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=1.3e-05 Score=72.37 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
.++..+.+.+. +..|+.=.-.++..+++|.++||.++.--.. ..-.|-|+-....+..+.+ +.++|||
T Consensus 114 tl~Aae~Lv~e--GF~VlpY~~~D~v~ak~Le~~Gc~avMPlgs-------PIGSg~Gl~n~~~l~~i~~---~~~vPvI 181 (251)
T d1xm3a_ 114 TLKASEQLLEE--GFIVLPYTSDDVVLARKLEELGVHAIMPGAS-------PIGSGQGILNPLNLSFIIE---QAKVPVI 181 (251)
T ss_dssp HHHHHHHHHHT--TCCEEEEECSCHHHHHHHHHHTCSCBEECSS-------STTCCCCCSCHHHHHHHHH---HCSSCBE
T ss_pred HHHHHHHHHhC--CcEEEEecCCCHHHHHHHHHcCChhHHHhhh-------hhhcCCCcCChHHHHHHHh---cCCccEE
Confidence 34444444443 4445443446788999999999999865311 1112334555566655544 3579999
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.|+||.++.|.+.|+.+|||+|.+.|+.+.+
T Consensus 182 vDAGIG~pSdAa~AMElG~daVLvNTAIA~a 212 (251)
T d1xm3a_ 182 VDAGIGSPKDAAYAMELGADGVLLNTAVSGA 212 (251)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred EecCCCCHHHHHHHHHccCCEEEechhhhcC
Confidence 9999999999999999999999999999754
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=97.98 E-value=3.7e-06 Score=71.39 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=51.5
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
.+.++|++ +++++.+++++.++++.|.++++..+||+|+ |+++|+||..|+++...
T Consensus 5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~ 61 (145)
T d1o50a3 5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSG 61 (145)
T ss_dssp HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhh
Confidence 35678998 9999999999999999999999999999998 99999999999988653
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=1.6e-05 Score=66.98 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=48.7
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 169 YMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 169 im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+|.+ +++++.+++++.+|+++|.++++..+||+|+ |+++|+||..|+++....
T Consensus 14 ~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~ 67 (140)
T d2nyca1 14 ITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 67 (140)
T ss_dssp CBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred ccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhh
Confidence 4555 9999999999999999999999999999999 999999999999987654
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=97.91 E-value=0.00013 Score=68.07 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC---------------------chhHHHHHHHHHHhCCCceEEEccc-------CC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN---------------------SSFQIEMIKYAKKTYPELDVIGGNV-------VT 299 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~---------------------~~~~~~~i~~l~~~~~~~~Vi~g~V-------~t 299 (505)
...+.++.+.++|+|++++..++.+ .....+.++.+++..++.|++.=+. +-
T Consensus 32 ~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~ 111 (267)
T d1qopa_ 32 QSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGI 111 (267)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhhcCc
Confidence 4577888889999999999764321 1345778888888765778766332 22
Q ss_pred HHHHHHHHHcCCCEEEEc-cC--------------------------------------Ccce-eecc-cccccCcChHH
Q 010640 300 MYQAQNLIEAGVDGLRVG-MG--------------------------------------SGSI-CTTQ-EVCAVGRGQAT 338 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g--------------------------------------~g~~-~~~~-~~~g~g~p~~~ 338 (505)
.+-++.+.++|+|++.+. .- .|-+ +.+. ..+|.......
T Consensus 112 ~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~ 191 (267)
T d1qopa_ 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGAL 191 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--
T ss_pred hHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccCCcccccch
Confidence 455788889999999874 20 0000 0000 02222211111
Q ss_pred HHHH-HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 339 AVYK-VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 339 ~l~~-v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.+ +.+..+..++||+..-||.+++|+.+++..|||+|.+||+|..
T Consensus 192 ~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk 239 (267)
T d1qopa_ 192 PLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (267)
T ss_dssp CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hHHHHHHHHhhhccCCceeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 1112 2233334579999989999999999999999999999999963
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=97.85 E-value=8.2e-06 Score=70.09 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=53.4
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC---CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD---GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~---g~l~GiIt~~dil~~~~ 222 (505)
+.+++++|++ +++++++++++.+++++|.+++.+.+||+|+ +.++|++|..|++....
T Consensus 10 ~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~ 70 (160)
T d2d4za3 10 NIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ 70 (160)
T ss_dssp SCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred ceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHh
Confidence 5689999999 9999999999999999999999999999984 68999999999988654
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.84 E-value=2.6e-05 Score=72.28 Aligned_cols=133 Identities=18% Similarity=0.185 Sum_probs=87.4
Q ss_pred ccHHHHHHHHHHcCccEEEE-eC--CCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEcc----
Q 010640 247 ESDKERLEHLVKAGVNVVVL-DS--SQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM---- 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i-~~--~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~---- 318 (505)
.+..+.++.+.+.|++.+++ |. +..........+..+++. ..|+.+ |++.+.++++.+.+.|++.+.++.
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~~~~~~~~~~~~~~~~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~ 107 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEKLSEF--AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE 107 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHHGGGG--GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccccCCcchhheehhccc--ccchhhhhhhhhhhhhhhccccccceEecCccccc
Confidence 45778888899999999865 43 111122233445555555 357754 678999999999999999998753
Q ss_pred ----------CCcceee---------------------------------------ccc-ccccC-cChHHHHHHHHHHH
Q 010640 319 ----------GSGSICT---------------------------------------TQE-VCAVG-RGQATAVYKVSSIA 347 (505)
Q Consensus 319 ----------g~g~~~~---------------------------------------~~~-~~g~g-~p~~~~l~~v~~~~ 347 (505)
.++.... +.. ..|.. .|.++.+..+.+
T Consensus 108 ~~~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~d~~l~~~i~~-- 185 (241)
T d1qo2a_ 108 DPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAI-- 185 (241)
T ss_dssp CTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHH--
T ss_pred CchhhhhhcccccceeeecccccccccccCcccceeeehhHHHHHhhccccceEEEeehhhhhhccccchhhhhhhhc--
Confidence 1111000 000 01111 134445544433
Q ss_pred hhcCCcEEecCCCCCHHHHHHHHHhC------CCEEEeccccc
Q 010640 348 AQSGVPVIADGGISNSGHIVKALVLG------ASTVMMGSFLA 384 (505)
Q Consensus 348 ~~~~ipvIa~GGI~~~~di~kal~lG------A~~V~~G~~f~ 384 (505)
..++|+|++||+.+..|+.++..+| +++|.+|++|.
T Consensus 186 -~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~ 227 (241)
T d1qo2a_ 186 -EAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFL 227 (241)
T ss_dssp -HHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHH
T ss_pred -cCCceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHH
Confidence 3569999999999999999999876 88999999983
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=97.83 E-value=0.00015 Score=66.85 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEcc--------
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGM-------- 318 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~-------- 318 (505)
+..+.+....+.|+.++.+-+...+..+..+.+..+++.. ++||+.+.. .+......+..+|||+|-+-.
T Consensus 66 dp~~~A~~y~~~GA~aiSVLTe~~~F~Gs~~dl~~v~~~~-~iPvLrKDFIid~~QI~ea~~~GADaVLLIaall~~~l~ 144 (254)
T d1vc4a_ 66 DPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGELTG 144 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCSSSCCCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHGGGHH
T ss_pred CHHHHHHHHHhcCCceEEEEcCcccccccHHHHHHHHHHc-CCCcccCCccccHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4567888899999999988775444455677788888887 899999876 588888889999999996532
Q ss_pred -----------------------------CCccee-ecccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHH
Q 010640 319 -----------------------------GSGSIC-TTQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHI 366 (505)
Q Consensus 319 -----------------------------g~g~~~-~~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di 366 (505)
+.--+. ..|++..+.+..-.+ ..+.+..+. .++.+|+.+||.++.|+
T Consensus 145 ~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~-~~l~~~i~~~~~~~i~IsESGI~~~~dv 223 (254)
T d1vc4a_ 145 AYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETA-PRLGRLARKRGFGGVLVAESGYSRKEEL 223 (254)
T ss_dssp HHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTTCCBCTTHH-HHHHHHHHHTTCCSEEEEESCCCSHHHH
T ss_pred HHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEEeccchhhhhcchHHH-HHhhhcccccCCCCEEEEccCCCCHHHH
Confidence 000000 112233232221111 122233332 25789999999999997
Q ss_pred HHHHHhCCCEEEecccccCC
Q 010640 367 VKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 367 ~kal~lGA~~V~~G~~f~~~ 386 (505)
. .+..|+++|.+|+.|+.+
T Consensus 224 ~-~l~~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 224 K-ALEGLFDAVLIGTSLMRA 242 (254)
T ss_dssp H-TTTTTCSEEEECHHHHTS
T ss_pred H-HHHcCCCEEEEChhhcCC
Confidence 5 567899999999999754
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=97.80 E-value=0.00029 Score=65.39 Aligned_cols=138 Identities=22% Similarity=0.283 Sum_probs=84.1
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC--------------------CCc-hhHHHHHHHHHHhCCCceEEEcccCCHH---H
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ--------------------GNS-SFQIEMIKYAKKTYPELDVIGGNVVTMY---Q 302 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~--------------------g~~-~~~~~~i~~l~~~~~~~~Vi~g~V~t~e---~ 302 (505)
+...+.++.+.++|+|++++..++ |.. ....+.++.+++.. ..|++.=...+.- .
T Consensus 31 ~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~-~~p~ilm~Y~n~~~~~~ 109 (261)
T d1rd5a_ 31 ATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPEL-SCPVVLLSYYKPIMFRS 109 (261)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGC-SSCEEEECCSHHHHSCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccc-cCceeeeeeecchhhHH
Confidence 346788888999999999997643 211 35677777777665 5666542221111 1
Q ss_pred HHHHHHcCCCEEEEc-c--------------------------------------CCccee-ecc-cccccCcChHHHHH
Q 010640 303 AQNLIEAGVDGLRVG-M--------------------------------------GSGSIC-TTQ-EVCAVGRGQATAVY 341 (505)
Q Consensus 303 a~~l~~aGad~I~v~-~--------------------------------------g~g~~~-~~~-~~~g~g~p~~~~l~ 341 (505)
..++.++|+|++.+- . ..|-+. .++ ..+|...+....+.
T Consensus 110 ~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~ 189 (261)
T d1rd5a_ 110 LAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVE 189 (261)
T ss_dssp THHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHH
T ss_pred HHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCcccccccchhHHH
Confidence 345677899988763 1 000000 000 12222211111111
Q ss_pred -HHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 342 -KVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 342 -~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.+.+..+..++||+..-||.++.|+.+....|||+|.+|++|..
T Consensus 190 ~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 190 SLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR 234 (261)
T ss_dssp HHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHhhhccCCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 22222333579999988999999999999999999999999863
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=97.79 E-value=1.1e-05 Score=68.61 Aligned_cols=99 Identities=12% Similarity=0.136 Sum_probs=70.1
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCC-----CCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcce
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKND-----VDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWM 238 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~-----i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~ 238 (505)
.+..+|++ +++++++++++.+|+++|++++ +..+||+|+ |+++|+|+.+|+........ ..+.-.+-.
T Consensus 2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~~~~----v~~im~~~~ 75 (144)
T d2yvxa2 2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADPRTR----VAEIMNPKV 75 (144)
T ss_dssp SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCTTCB----STTTSBSSC
T ss_pred CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcccccc----hHHhcccCC
Confidence 36789999 9999999999999999998874 778999999 99999999999987643221 111101111
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEeCCCC
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQG 271 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g 271 (505)
+. +.......+.++.+.+.+...+.+-...|
T Consensus 76 ~~--v~~~~~~~~a~~~m~~~~~~~lPVVd~~g 106 (144)
T d2yvxa2 76 VY--VRTDTDQEEVARLMADYDFTVLPVVDEEG 106 (144)
T ss_dssp CC--EESSCCHHHHHHHHHHSCCSEEEEECSSC
T ss_pred cc--CCCCChHHHHHHHHHHcCCCEEEEEeECC
Confidence 11 11233467777888888888875544444
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.76 E-value=2.6e-05 Score=66.01 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=46.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcC
Q 010640 175 SNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGY 223 (505)
Q Consensus 175 ~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~ 223 (505)
+++++.+++++.+|+++|.++++..+||+|+ |+++|+||..|+++....
T Consensus 21 ~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~ 70 (145)
T d2v8qe1 21 NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE 70 (145)
T ss_dssp SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGS
T ss_pred CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhc
Confidence 7899999999999999999999999999998 999999999999987754
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.75 E-value=9.6e-05 Score=67.27 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=61.4
Q ss_pred ceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHH
Q 010640 290 LDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKA 369 (505)
Q Consensus 290 ~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~ka 369 (505)
..|+.=.-.++..++.+.+.|+.++.--..+ .-.|.|+-....+..+.+ ..++|||.|+||.++.|+++|
T Consensus 128 F~Vlpy~~~D~v~ak~le~~Gc~~vMplgsP-------IGsg~Gi~n~~~l~~i~~---~~~vpvivdAGIg~psdaa~A 197 (243)
T d1wv2a_ 128 FDVMVYTSDDPIIARQLAEIGCIAVMPLAGL-------IGSGLGICNPYNLRIILE---EAKVPVLVDAGVGTASDAAIA 197 (243)
T ss_dssp CEEEEEECSCHHHHHHHHHSCCSEEEECSSS-------TTCCCCCSCHHHHHHHHH---HCSSCBEEESCCCSHHHHHHH
T ss_pred eEEEeccCCCHHHHhHHHHcCceeeeecccc-------cccccccccHHHHHhccc---cCCcceEeecccCCHHHHHHH
Confidence 3444323357788999999999998653211 112233334444443332 357999999999999999999
Q ss_pred HHhCCCEEEecccccCC
Q 010640 370 LVLGASTVMMGSFLAGS 386 (505)
Q Consensus 370 l~lGA~~V~~G~~f~~~ 386 (505)
+.+|||+|.+.|....+
T Consensus 198 MElG~dgVLvnsaIa~A 214 (243)
T d1wv2a_ 198 MELGCEAVLMNTAIAHA 214 (243)
T ss_dssp HHHTCSEEEESHHHHTS
T ss_pred HHccCCEEEechHhhcC
Confidence 99999999999998654
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=2.1e-05 Score=70.58 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=85.0
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+|+..-. ..+.++.++++|+++++ +.+.. .+.++..++. +++++. ++.|+.++..+.++|++.++
T Consensus 61 ~~~vGaGTV~---~~~~~~~a~~aGa~fiv---sP~~~---~~v~~~~~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~lK 128 (202)
T d1wa3a1 61 GAIIGAGTVT---SVEQCRKAVESGAEFIV---SPHLD---EEISQFCKEK--GVFYMP-GVMTPTELVKAMKLGHTILK 128 (202)
T ss_dssp TCEEEEESCC---SHHHHHHHHHHTCSEEE---CSSCC---HHHHHHHHHH--TCEEEC-EECSHHHHHHHHHTTCCEEE
T ss_pred CcEEEecccc---cHHHHHHHHhhcccEEe---CCCCc---HHHHHHHHhc--CCceeC-CcCcHHHHHHHHHCCCCEEE
Confidence 3556655322 35778889999999996 33433 3555666666 688766 78999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+= ++ .. .|. ..+..+.... -++|+++.||| +..++...+.+||.+|.+|+.+.
T Consensus 129 ~f--Pa------~~--~G~---~~lk~l~~p~--p~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~ 181 (202)
T d1wa3a1 129 LF--PG------EV--VGP---QFVKAMKGPF--PNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALV 181 (202)
T ss_dssp ET--TH------HH--HHH---HHHHHHHTTC--TTCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHH
T ss_pred ec--ch------hh--cCH---HHHHHHhCcc--cCCcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhc
Confidence 72 11 01 111 1222222222 25999999999 88999999999999999999774
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=97.74 E-value=0.00011 Score=70.38 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=82.2
Q ss_pred HHHHHHHHHcCccEEEEeCCCC---------------CchhHHHHHHHHHHhCCCceEEEccc------CCHHHHHHHHH
Q 010640 250 KERLEHLVKAGVNVVVLDSSQG---------------NSSFQIEMIKYAKKTYPELDVIGGNV------VTMYQAQNLIE 308 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g---------------~~~~~~~~i~~l~~~~~~~~Vi~g~V------~t~e~a~~l~~ 308 (505)
...+..+++.|++.|-++..+. ++..+.+.++.+++.. ++||-+|.- .+.+.++.+.+
T Consensus 69 ~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~-~~pvsvK~RlG~d~~~~~~~~~~l~~ 147 (305)
T d1vhna_ 69 LSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV-SGKFSVKTRLGWEKNEVEEIYRILVE 147 (305)
T ss_dssp HHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC-SSEEEEEEESCSSSCCHHHHHHHHHH
T ss_pred hhhhhhhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhc-ccccccccccCcccchhhHHHHHHHH
Confidence 3344456677999988876442 2245677777888776 788877521 24677889999
Q ss_pred cCCCEEEEccCCcc-eeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEEecccccC
Q 010640 309 AGVDGLRVGMGSGS-ICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVMMGSFLAG 385 (505)
Q Consensus 309 aGad~I~v~~g~g~-~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~~f~~ 385 (505)
+|++.|.| |+-. ....+....| ..+.. ++ .++|||+-|||.+..|+.+++. -|+|+||+|+..+.
T Consensus 148 ~G~~~itv--H~Rt~~q~~~~~a~~-----~~i~~----~~-~~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~ 214 (305)
T d1vhna_ 148 EGVDEVFI--HTRTVVQSFTGRAEW-----KALSV----LE-KRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIG 214 (305)
T ss_dssp TTCCEEEE--ESSCTTTTTSSCCCG-----GGGGG----SC-CSSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTT
T ss_pred hCCcEEEe--chhhhhhccccchhh-----hHHHh----hh-hhhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHH
Confidence 99999977 2210 0001111222 12211 12 2599999999999999999996 59999999987653
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=97.71 E-value=0.00013 Score=65.57 Aligned_cols=84 Identities=24% Similarity=0.292 Sum_probs=57.5
Q ss_pred EcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC
Q 010640 294 GGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG 373 (505)
Q Consensus 294 ~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG 373 (505)
.....+.+++..+...|+|++.+|- +..+....+...-.+..+. +.++..++||++-||| +..++..++.+|
T Consensus 103 g~s~h~~~e~~~a~~~g~DYi~~gp----vf~T~tk~~~~~~g~~~l~---~~~~~~~~Pv~AiGGI-~~~ni~~~~~~G 174 (206)
T d1xi3a_ 103 GASVYSLEEALEAEKKGADYLGAGS----VFPTKTKEDARVIGLEGLR---KIVESVKIPVVAIGGI-NKDNAREVLKTG 174 (206)
T ss_dssp EEEESSHHHHHHHHHHTCSEEEEEC----SSCC----CCCCCHHHHHH---HHHHHCSSCEEEESSC-CTTTHHHHHTTT
T ss_pred ccccCCHHHHHHHHhcCCCEEEecc----ccccccccccccccHHHHH---HHHHhcCCCEEEECCC-CHHHHHHHHHhC
Confidence 3456788999999999999998761 1111111111111233343 3444567999999998 888999999999
Q ss_pred CCEEEecccccC
Q 010640 374 ASTVMMGSFLAG 385 (505)
Q Consensus 374 A~~V~~G~~f~~ 385 (505)
|++|.+.+.+..
T Consensus 175 a~gvAvis~I~~ 186 (206)
T d1xi3a_ 175 VDGIAVISAVMG 186 (206)
T ss_dssp CSEEEESHHHHT
T ss_pred CCEEEEhHHHHC
Confidence 999999998764
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.70 E-value=1.8e-05 Score=67.86 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=50.0
Q ss_pred ccccccc-cCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhc
Q 010640 165 KIFDYMR-DCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 165 ~v~~im~-~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~ 222 (505)
|+.+++- ...+++++.+++++.+|++.|.++++.++||+|+ |+++|+||..|+++...
T Consensus 2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~ 61 (153)
T d2ooxe2 2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQ 61 (153)
T ss_dssp BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHG
T ss_pred CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhc
Confidence 4555542 1348999999999999999999999999999999 99999999999988764
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=97.68 E-value=0.00029 Score=64.22 Aligned_cols=124 Identities=23% Similarity=0.306 Sum_probs=79.8
Q ss_pred HHHHHHcCccEEEEeCCCC-C-chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc----cCCcceeec
Q 010640 253 LEHLVKAGVNVVVLDSSQG-N-SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG----MGSGSICTT 326 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g-~-~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~----~g~g~~~~~ 326 (505)
.+.+.+.|++.+.+.-+.- . .....+.++..++. +..+++ .+.+.+.++.+.+.+.+.|-.- +|.|.....
T Consensus 78 ~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~--gl~~iv-cvge~~~~~~~~~~~~~iIayep~waIGtg~~~~~ 154 (226)
T d1w0ma_ 78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSL--GLDVVV-CAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSR 154 (226)
T ss_dssp HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHT--TCEEEE-EESSHHHHHHHHHTCCSEEEECCGGGTTTSCCHHH
T ss_pred HhhhcccccceEEeechhhhhhccchHHHHHHHHHc--CCEEEE-ecCchHHhhhhhccccceeeecchhhccCCCCCCh
Confidence 5567788999998722221 1 12334444444444 566666 6788999999999999988652 111110000
Q ss_pred ccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGST 387 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~ 387 (505)
.....+....+..++ .++||+..|||.++.++..++..|+|+|.+|++++.+.
T Consensus 155 --------~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~ 209 (226)
T d1w0ma_ 155 --------YKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAK 209 (226)
T ss_dssp --------HCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCS
T ss_pred --------hhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCC
Confidence 011222222222222 36999999999999999999999999999999998653
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.67 E-value=1.8e-05 Score=68.05 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=52.6
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeC--CeeeeEEeechhhhhh
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKD--GERLDVVTREDVERLK 221 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~--g~l~GiIt~~dil~~~ 221 (505)
...+.|+|.+..+++++..++++.+|++.|.++++..+||+|+ ++++|+||..|+++..
T Consensus 12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~ 72 (159)
T d2v8qe2 12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINIL 72 (159)
T ss_dssp HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHH
T ss_pred CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHH
Confidence 3468899966558899999999999999999999999999974 8999999999998865
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.64 E-value=1.3e-05 Score=70.54 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=53.1
Q ss_pred ccccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEee-C-CeeeeEEeechhhhhhc
Q 010640 163 KVKIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEK-D-GERLDVVTREDVERLKG 222 (505)
Q Consensus 163 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd-~-g~l~GiIt~~dil~~~~ 222 (505)
...+.++|.+..+++++.++.++.+|++.|.++++..+||+| + ++++|++|..|+++...
T Consensus 19 ~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~ 80 (179)
T d2ooxe1 19 SRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 80 (179)
T ss_dssp HSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred CCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHH
Confidence 346889997545899999999999999999999999999998 4 89999999999988653
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.00015 Score=65.10 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=84.9
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEE
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~ 315 (505)
.+.+|+..-. ..+.++.++++|+++++- .+.. .+.++..++. +++++- ++.|+.++..+.++|++.++
T Consensus 66 ~~~vGaGTV~---~~~~~~~a~~aGa~FivS---P~~~---~~v~~~a~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~vK 133 (213)
T d1wbha1 66 EAIVGAGTVL---NPQQLAEVTEAGAQFAIS---PGLT---EPLLKAATEG--TIPLIP-GISTVSELMLGMDYGLKEFK 133 (213)
T ss_dssp TSEEEEESCC---SHHHHHHHHHHTCSCEEE---SSCC---HHHHHHHHHS--SSCEEE-EESSHHHHHHHHHTTCCEEE
T ss_pred CCeeeccccc---cHHHHHHHHHCCCcEEEC---CCCC---HHHHHHHHhc--CCCccC-CcCCHHHHHHHHHCCCCEEE
Confidence 4667766422 457788899999999964 3322 3555556665 788877 68999999999999999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+=- ....| ....+..+.... -++++++.|||. ..++...|.+|+.++.+|+.+.
T Consensus 134 lFP----------A~~~G--g~~~lkal~~p~--p~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 134 FFP----------AEANG--GVKALQAIAGPF--SQVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLV 187 (213)
T ss_dssp ETT----------TTTTT--HHHHHHHHHTTC--TTCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGS
T ss_pred ecc----------chhcC--hHHHHHHhcCcc--cCCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhC
Confidence 720 00011 122222222222 258999999986 5799999999999999998764
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=97.57 E-value=0.00026 Score=58.29 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=66.3
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCC-----CCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccC-CCCcc
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKND-----VDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVG-PDGKW 237 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~-----i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d-~~~~l 237 (505)
.+..+|++ ++++++++.++.+|++.|++++ +..+||+|+ |+++|+++..+++....... ..+ .....
T Consensus 2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~~~~~----v~~im~~~~ 75 (127)
T d2ouxa2 2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDDDTL----IADILNERV 75 (127)
T ss_dssp BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSCTTSB----HHHHSBSCC
T ss_pred ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeeccccccccEE----hhhhccCCC
Confidence 36779999 9999999999999999998874 789999999 99999999999987543211 011 01111
Q ss_pred eEEEeecCCccHHHHHHHHHHcCccEEEE
Q 010640 238 MVGAAIGTRESDKERLEHLVKAGVNVVVL 266 (505)
Q Consensus 238 ~v~a~i~~~~~~~e~~~~lieaGad~I~i 266 (505)
. .+.......+.++.+.+.+...+.+
T Consensus 76 ~---~v~~~~~l~~a~~~m~~~~~~~lPV 101 (127)
T d2ouxa2 76 I---SVHVGDDQEDVAQTIRDYDFLAVPV 101 (127)
T ss_dssp C---CEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred c---cCCCCCCHHHHHHHHHHhCCEEEEE
Confidence 1 1222344667777777778777744
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.53 E-value=3.2e-05 Score=64.50 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=51.2
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcC
Q 010640 165 KIFDYMRDCSSNVSVPANYDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGY 223 (505)
Q Consensus 165 ~v~~im~~~~~~~~v~~~~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~ 223 (505)
+++++|++ +++++.+++++.+|++.|.+++++++||+|+ +++|++|..|+++....
T Consensus 2 ~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-~lvg~~~~~~~~~~~~~ 57 (135)
T d3ddja2 2 NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE-KIEGLLTTRDLLSTVES 57 (135)
T ss_dssp SGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS-SEEEEEEHHHHHGGGTT
T ss_pred EeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec-ceeceeeccchhhhhcc
Confidence 47899999 9999999999999999999999999999965 79999999999987643
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=0.00065 Score=62.27 Aligned_cols=178 Identities=13% Similarity=0.088 Sum_probs=110.4
Q ss_pred cCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHH
Q 010640 180 PANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVK 258 (505)
Q Consensus 180 ~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lie 258 (505)
..+.+..++.+ ..+.+...+-|.-| ..+-|= .+|+-...... .+++-...-.. ...++.....
T Consensus 65 ~~~~~p~~~a~-~~~~gA~aiSVLTe~~~F~Gs--~~~l~~v~~~~-----------~~PiLrKDFIi--d~~QI~ear~ 128 (254)
T d1piia2 65 RDDFDPARIAA-IYKHYASAISVLTDEKYFQGS--FNFLPIVSQIA-----------PQPILCKDFII--DPYQIYLARY 128 (254)
T ss_dssp CSSCCHHHHHH-HHTTTCSEEEEECCSTTTCCC--TTHHHHHHHHC-----------CSCEEEESCCC--SHHHHHHHHH
T ss_pred cccchhHHHHH-HHHhccCceEEecccccCCCC--HHHHHHHHhcc-----------ccccchhcccC--cHHHHHHHHh
Confidence 44555666665 55678888888877 666664 34443332211 01121111011 2345556677
Q ss_pred cCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHH
Q 010640 259 AGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQAT 338 (505)
Q Consensus 259 aGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~ 338 (505)
.|+|++.+-.+.=......++++..++. +..+++ +|.+.++...+.++|++.|-+- .|.+..+.+.. .
T Consensus 129 ~GADavLLI~~~L~~~~l~~l~~~a~~l--gl~~LV-Evh~~~El~~a~~~~a~iIGIN--------nRnL~tf~vd~-~ 196 (254)
T d1piia2 129 YQADACLLMLSVLDDDQYRQLAAVAHSL--EMGVLT-EVSNEEEQERAIALGAKVVGIN--------NRDLRDLSIDL-N 196 (254)
T ss_dssp TTCSEEEEETTTCCHHHHHHHHHHHHHT--TCEEEE-EECSHHHHHHHHHTTCSEEEEE--------SEETTTTEECT-H
T ss_pred hccchhhhhHhhhcccHHHHHHHHHHHH--hhhHHH-hhccHHHHHHHHhhcccccCcc--------ccchhhhhhhh-H
Confidence 8999987744332222344444444444 777777 8999999999999999988442 34444443332 2
Q ss_pred HHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCCC
Q 010640 339 AVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGST 387 (505)
Q Consensus 339 ~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~~ 387 (505)
....+....+ .+..+|+.+||.++.|+.. +..|+++|.+|+.|+.+.
T Consensus 197 ~t~~L~~~ip-~~~~~VsESGI~~~~d~~~-l~~g~davLiGeslm~~~ 243 (254)
T d1piia2 197 RTRELAPKLG-HNVTVISESGINTYAQVRE-LSHFANGFLIGSALMAHD 243 (254)
T ss_dssp HHHHHHHHHC-TTSEEEEESCCCCHHHHHH-HTTTCSEEEECHHHHTCS
T ss_pred HHHHHHHhCC-CCCEEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhCCC
Confidence 2223334443 3678999999999999866 578999999999997543
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.49 E-value=0.00058 Score=62.04 Aligned_cols=123 Identities=19% Similarity=0.217 Sum_probs=78.1
Q ss_pred HHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc----cCCcceeec
Q 010640 253 LEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG----MGSGSICTT 326 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~----~g~g~~~~~ 326 (505)
++.+.+.|++.+.+.-+... .....+.++..++. +..++. .+.+...++.+.+.+.+.|-.- +|.|.....
T Consensus 80 ~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~--gl~~i~-cv~~~~~~~~~~~~~~~iiAyEpvwaIGtg~~~~~ 156 (224)
T d1hg3a_ 80 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEV--GLMTMV-CSNNPAVSAAVAALNPDYVAVEPPELIGTGIPVSK 156 (224)
T ss_dssp HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHH--TCEEEE-EESSHHHHHHHHTTCCSEEEECCTTTTTTSCCTTT
T ss_pred hhhccccCcceeeeccccccccccchhHHHHHHHHc--CCceee-chhhHHHHHhhhhcccceEEecchHhhccccCCCc
Confidence 45677889999988322111 12334455555555 455544 4678888898989998887652 222211100
Q ss_pred ccccccCcChHHHHHHHHHHHh--hcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAA--QSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~--~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.....+....+..+ ..++||+..|||.++.|+..++.+|+|+|.+|++++.+
T Consensus 157 --------~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a 210 (224)
T d1hg3a_ 157 --------AKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA 210 (224)
T ss_dssp --------SCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred --------hhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecC
Confidence 11122222222221 12589999999999999999999999999999998864
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.46 E-value=0.0024 Score=58.44 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEEccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~ 325 (505)
..+.++.+.++|++.+.+ |... +...+....+++. ++.. ++....+.+..+.+.+..-.+|......|-..
T Consensus 97 ~~~f~~~~~~~Gv~GliipDLP~---eE~~~~~~~~~~~--gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG- 170 (248)
T d1geqa_ 97 VRNFLAEAKASGVDGILVVDLPV---FHAKEFTEIAREE--GIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTG- 170 (248)
T ss_dssp HHHHHHHHHHHTCCEEEETTCCG---GGHHHHHHHHHHH--TCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-----
T ss_pred HHHHhhhhcccCeeEEeccCCcH---HHHHHHHhhcccc--CcceEEEecccchhHHHHHHHhcCCCeEEEEecccccc-
Confidence 457788888999999877 3322 2334455555555 3332 33455677788887777777776631111100
Q ss_pred cccccccCcC--hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRG--QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p--~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+. ..+ ....+..+ .+..++|++..-||.+++|+.+++..|||+|.+||+|.
T Consensus 171 ~~~----~~~~~~~~~v~~v---k~~t~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv 224 (248)
T d1geqa_ 171 ARE----EIPKTAYDLLRRA---KRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV 224 (248)
T ss_dssp -------CCCHHHHHHHHHH---HHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred cch----hhhhhHHHHHHHH---hhhcccceeeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence 000 012 12223333 33357999998899999999999999999999999996
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.44 E-value=0.001 Score=59.50 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=33.3
Q ss_pred cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 350 SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 350 ~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
..+|++++|||.++.|.+.++.+|||+|.+||.+..
T Consensus 188 l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~ 223 (254)
T d1znna1 188 LPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK 223 (254)
T ss_dssp CSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred CCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhc
Confidence 469999999999999999999999999999998754
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.38 E-value=8e-05 Score=64.64 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=46.8
Q ss_pred ccccccccCC--Cc--eEecCCCCHHHHHHHHHHCCCCeeEEe--eC-CeeeeEEeechhhhhhc
Q 010640 165 KIFDYMRDCS--SN--VSVPANYDLGQIDEVLEKNDVDFVVLE--KD-GERLDVVTREDVERLKG 222 (505)
Q Consensus 165 ~v~~im~~~~--~~--~~v~~~~~l~~a~~~l~~~~i~~lpVv--d~-g~l~GiIt~~dil~~~~ 222 (505)
.+.|+|.++. ++ +++.++.++.++.++|.+++++.+||| ++ ++++|+||.+||+....
T Consensus 4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~ 68 (169)
T d2j9la1 4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE 68 (169)
T ss_dssp BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHh
Confidence 4677886532 22 445678899999999999999999999 44 78999999999998764
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=97.23 E-value=0.00085 Score=65.48 Aligned_cols=127 Identities=15% Similarity=0.180 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEE--c------c
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIG--G------N 296 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~--g------~ 296 (505)
+.+.++.+.++|.|.|+||.++|+ + +-..+.++.+|+.++.-+|.+ . .
T Consensus 162 f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~ 241 (363)
T d1vyra_ 162 FRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN 241 (363)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT
T ss_pred HHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccc
Confidence 566677888999999999976532 1 246788888899875333322 1 1
Q ss_pred ----cCCHH----HHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 ----VVTMY----QAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 ----V~t~e----~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
..+.+ .++.+.++|+|++.++.+. ... +.|....+. .......++||+..| +.++..+.+
T Consensus 242 ~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~--~~~-------~~~~~~~~~--~~~~~~~~~~vi~~G-~~t~~~ae~ 309 (363)
T d1vyra_ 242 VDNGPNEEADALYLIEELAKRGIAYLHMSETD--LAG-------GKPYSEAFR--QKVRERFHGVIIGAG-AYTAEKAED 309 (363)
T ss_dssp BCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB--TTB-------CCCCCHHHH--HHHHHHCCSEEEEES-SCCHHHHHH
T ss_pred hhhcccchHHHHHHHHHHHhcCCeeeecccCC--ccC-------CccccHHHH--HHHHHhcCceEEecC-CCCHHHHHH
Confidence 11223 3567778999999997431 111 112112222 122233567888755 669999999
Q ss_pred HHHhC-CCEEEecccccCCC
Q 010640 369 ALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~~ 387 (505)
+|+-| ||+|.+|++|+.-.
T Consensus 310 ~l~~G~~DlV~~gR~liadP 329 (363)
T d1vyra_ 310 LIGKGLIDAVAFGRDYIANP 329 (363)
T ss_dssp HHHTTSCSEEEESHHHHHCT
T ss_pred HHHCCCcceehhhHHHHHCc
Confidence 99999 89999999998643
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.002 Score=58.82 Aligned_cols=178 Identities=11% Similarity=0.116 Sum_probs=109.9
Q ss_pred ecCCCCHHHHHHHHHHCCCCeeEEeeC-CeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHH
Q 010640 179 VPANYDLGQIDEVLEKNDVDFVVLEKD-GERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLV 257 (505)
Q Consensus 179 v~~~~~l~~a~~~l~~~~i~~lpVvd~-g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~li 257 (505)
+.++.+..+..+... .+...+-|..| ..+-| +..|+........ +++-...-.. ...++....
T Consensus 57 i~~~~d~~~~a~~ye-~GA~aiSVLTd~~~F~G--s~~~l~~vr~~~~-----------~PiLrKDFIi--d~~QI~ea~ 120 (251)
T d1i4na_ 57 INADASLEDFIRMYD-ELADAISILTEKHYFKG--DPAFVRAARNLTC-----------RPILAKDFYI--DTVQVKLAS 120 (251)
T ss_dssp SCTTCCHHHHHHHHH-HHCSEEEEECCCSSSCC--CTHHHHHHHTTCC-----------SCEEEECCCC--STHHHHHHH
T ss_pred CcCCccHHHHHHHHh-cCCcceEEecccCCCCC--CHHHHHHHhhccc-----------Cchhhhhhhh--CHHHHHHHH
Confidence 345567777777774 58899999987 77888 5667666553311 2222221111 224455566
Q ss_pred HcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHH-cCCCEEEEccCCcceeecccccccCcCh
Q 010640 258 KAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIE-AGVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
Q Consensus 258 eaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~-aGad~I~v~~g~g~~~~~~~~~g~g~p~ 336 (505)
..|+|++.+-.+.=......+.++..+.. +..+++ +|.+.++...+.+ .|++.|-+- .|.+..+-+..
T Consensus 121 ~~GADaiLLI~~~L~~~~l~~l~~~a~~l--gle~Lv-Evh~~~El~~al~~~~a~iiGIN--------nRdL~t~~vd~ 189 (251)
T d1i4na_ 121 SVGADAILIIARILTAEQIKEIYEAAEEL--GMDSLV-EVHSREDLEKVFSVIRPKIIGIN--------TRDLDTFEIKK 189 (251)
T ss_dssp HTTCSEEEEEGGGSCHHHHHHHHHHHHTT--TCEEEE-EECSHHHHHHHHTTCCCSEEEEE--------CBCTTTCCBCT
T ss_pred hhccceEEeecccccHHHHHHHHHHHHHh--CCeeec-ccCCHHHHHHHhcccccceeeee--------ecchhccchhh
Confidence 78999987644322122334444444443 777777 8999999998875 579988443 23333332221
Q ss_pred HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 337 ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 337 ~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
-. ...+....+ .+..+|+.+||.++.|+.. +..|+++|.+|+.|+.+
T Consensus 190 ~~-~~~L~~~ip-~~~~~IaESGI~~~~d~~~-l~~G~davLIG~sLm~~ 236 (251)
T d1i4na_ 190 NV-LWELLPLVP-DDTVVVAESGIKDPRELKD-LRGKVNAVLVGTSIMKA 236 (251)
T ss_dssp TH-HHHHGGGSC-TTSEEEEESCCCCGGGHHH-HTTTCSEEEECHHHHHC
T ss_pred hH-HHHHHhhCC-CCCEEEEcCCCCCHHHHHH-HHhCCCEEEEChHHhCC
Confidence 11 122222233 2578999999999999855 57899999999998753
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.19 E-value=9.8e-05 Score=60.35 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=36.8
Q ss_pred eEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEeccccc
Q 010640 115 VFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWE 157 (505)
Q Consensus 115 ~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~ 157 (505)
++++++.++.+|.++|.+ ++ +||+|+ +|+++|+||.+|+.
T Consensus 74 ~~v~~~~~~~~a~~~m~~~~i~~lpVVd~---~~~lvGiiT~~Di~ 116 (120)
T d1jr1a4 74 VVAPAGITLKEANEILQRSKKGKLPIVNE---NDELVAIIARTDLK 116 (120)
T ss_dssp CCEETTCCHHHHHHHTCSCC---CEEEET---TTEEEEEECHHHHH
T ss_pred eEECCCCCHHHHHHHHHHcCccEEEEEcC---CCEEEEEEEHHHhh
Confidence 889999999999999999 76 999998 89999999999984
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.17 E-value=0.0046 Score=55.62 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCC-----CCchhHHHHHHHHHHhCCCce--EEE-cccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ-----GNSSFQIEMIKYAKKTYPELD--VIG-GNVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~-----g~~~~~~~~i~~l~~~~~~~~--Vi~-g~V~t~e----~a~~l~~aGad~I~v 316 (505)
....++.+++.|++-+-+.... |....+.+.++.+++..++.+ ||. ....+.+ .++.+.++|+|+|+.
T Consensus 72 K~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKT 151 (225)
T d1mzha_ 72 KVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKT 151 (225)
T ss_dssp HHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHHHHcccceEee
Confidence 4456678888999998665532 444556677777777664443 333 2223444 346677899999998
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccc
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSF 382 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~ 382 (505)
+.|-+.. ..++..+...++... .++.|=++|||++..++.+.+.+||+-++..+.
T Consensus 152 STG~~~~----------gat~e~v~~m~~~~~-~~~~iKasGGIrt~~~a~~~i~~Ga~RiGtSs~ 206 (225)
T d1mzha_ 152 STGFAPR----------GTTLEEVRLIKSSAK-GRIKVKASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp CCSCSSS----------CCCHHHHHHHHHHHT-TSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred cCCCCCC----------CCCHHHHHHHHHHhC-CCceEECcCCCCCHHHHHHHHHhchhheecCcH
Confidence 7542211 134455555555543 358999999999999999999999996655543
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.16 E-value=0.00049 Score=61.81 Aligned_cols=161 Identities=12% Similarity=0.156 Sum_probs=100.3
Q ss_pred CCHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCcc
Q 010640 183 YDLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVN 262 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad 262 (505)
+...+..+.+.+.+++.+=|.-. -.+-++.+.. .++.-+.+.+|+..-. ..+.++.++++|++
T Consensus 29 ~~a~~~~~al~~~Gi~~iEitl~--------~p~a~~~i~~------l~~~~p~~~vGaGTV~---~~~~~~~a~~aGa~ 91 (216)
T d1mxsa_ 29 EDILPLADALAAGGIRTLEVTLR--------SQHGLKAIQV------LREQRPELCVGAGTVL---DRSMFAAVEAAGAQ 91 (216)
T ss_dssp GGHHHHHHHHHHTTCCEEEEESS--------STHHHHHHHH------HHHHCTTSEEEEECCC---SHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHCCCCEEEEeCC--------ChhHHHHHHH------HHHhCCCcceeeeeee---cHHHHHHHHhCCCC
Confidence 44566677777777776555421 0111111110 1112234677776432 45778889999999
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHH
Q 010640 263 VVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYK 342 (505)
Q Consensus 263 ~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~ 342 (505)
+++ +.+.. .+.++..++. ++|.+- ++.|+.++..+.++|++.+++=- .... .....+..
T Consensus 92 Fiv---sP~~~---~~v~~~a~~~--~i~~iP-Gv~TpsEi~~A~~~G~~~vKlFP-------A~~~-----~g~~~ika 150 (216)
T d1mxsa_ 92 FVV---TPGIT---EDILEAGVDS--EIPLLP-GISTPSEIMMGYALGYRRFKLFP-------AEIS-----GGVAAIKA 150 (216)
T ss_dssp SEE---CSSCC---HHHHHHHHHC--SSCEEC-EECSHHHHHHHHTTTCCEEEETT-------HHHH-----THHHHHHH
T ss_pred EEE---CCCCc---HHHHHHHHhc--CCCccC-CcCCHHHHHHHHHCCCCEEEecc-------cccc-----ccHHHHHH
Confidence 986 33333 3455555565 788766 69999999999999999998720 0000 01122222
Q ss_pred HHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 343 VSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 343 v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
+.... -++++++.|||. ..++...|++|+.++..|+.++
T Consensus 151 l~~p~--p~~~fiptGGV~-~~n~~~yl~~~~v~avggs~l~ 189 (216)
T d1mxsa_ 151 FGGPF--GDIRFCPTGGVN-PANVRNYMALPNVMCVGTTWML 189 (216)
T ss_dssp HHTTT--TTCEEEEBSSCC-TTTHHHHHHSTTBCCEEECTTS
T ss_pred Hhccc--ccCceeccCCCC-HHHHHHHHhcCCeEEEEccccC
Confidence 22222 259999999996 5799999999998888888764
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=97.05 E-value=0.0018 Score=63.28 Aligned_cols=129 Identities=15% Similarity=0.165 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc--c-----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG--N----- 296 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g--~----- 296 (505)
.+.+.++.+.++|.|.|+||.++|+ + +-.++.++.+|+.+++..+++. .
T Consensus 164 ~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~ 243 (374)
T d1gwja_ 164 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF 243 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred HHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeecccc
Confidence 3666677888999999999976532 1 2457888888888743333321 0
Q ss_pred -cC--C-----HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 297 -VV--T-----MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 297 -V~--t-----~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
.. . ...+..+...|++++.++... ... .....|.. + .....+..++|||..|++ ++..+.+
T Consensus 244 g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~---~~~---~~~~~~~~--~--~~~i~~~~~~pvi~~G~i-~~~~ae~ 312 (374)
T d1gwja_ 244 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPD---WIG---GDITYPEG--F--REQMRQRFKGGLIYCGNY-DAGRAQA 312 (374)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHTCSEEEEECSC---BTT---BCCCCCTT--H--HHHHHHHCCSEEEEESSC-CHHHHHH
T ss_pred CCcccchHHHHHHhhccccccCceEEEeccCc---ccC---CCcchhHH--H--HHHHHHHcCCCEEEECCc-CHHHHHH
Confidence 01 1 223455677899999775321 000 01112211 1 122334567999999999 8999999
Q ss_pred HHHhC-CCEEEecccccCCC
Q 010640 369 ALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~~ 387 (505)
+|+-| ||+|+||++|+.-.
T Consensus 313 ~l~~g~aDlV~~gR~~iadP 332 (374)
T d1gwja_ 313 RLDDNTADAVAFGRPFIANP 332 (374)
T ss_dssp HHHTTSCSEEEESHHHHHCT
T ss_pred HHHcCCCcEehhhHHHHHCc
Confidence 99998 99999999998643
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.04 E-value=0.013 Score=52.03 Aligned_cols=122 Identities=20% Similarity=0.223 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCCce--EEE-cccCCHHH----HHHHHHcCCCEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPELD--VIG-GNVVTMYQ----AQNLIEAGVDGLR 315 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~~~--Vi~-g~V~t~e~----a~~l~~aGad~I~ 315 (505)
.....++.+++.|++-+-+... .|+...+.+.++.+++..++.+ ||. -...+.+. ++.+.++|+|+|+
T Consensus 71 ~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiK 150 (211)
T d1ub3a_ 71 VKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLK 150 (211)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHHHHHHHHHHhccceEE
Confidence 3455677788899999866543 2555667778888888775443 444 12235443 3566779999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
.+.|-+. +..++..+...++... .++.|=++|||+|..++.+.+.+||+-++..
T Consensus 151 TSTG~~~----------~gat~e~v~~m~~~~~-~~~~iKasGGIrt~~~a~~~l~aGa~riGtS 204 (211)
T d1ub3a_ 151 TSTGFGP----------RGASLEDVALLVRVAQ-GRAQVKAAGGIRDRETALRMLKAGASRLGTS 204 (211)
T ss_dssp CCCSSSS----------CCCCHHHHHHHHHHHT-TSSEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred ecCCCCC----------CCCCHHHHHHHHHHhC-CCceEECcCCCCCHHHHHHHHHHhhhHhccC
Confidence 8743211 1134555555555554 3588999999999999999999999865543
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0033 Score=55.67 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
.....+.+.++|+|.+.+|...|. ......++..++. +..+ ..-+..+.+.+..+.+.+++.+.+..+. .
T Consensus 67 ~~~~~~~~~~~gad~vtvh~~~g~-~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 138 (213)
T d1q6oa_ 67 GKILSRMCFEANADWVTVICCADI-NTAKGALDVAKEF--NGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSR-----D 138 (213)
T ss_dssp HHHHHHHHHHTTCSEEEEETTSCH-HHHHHHHHHHHHT--TCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCH-----H
T ss_pred hHHHHHHHHHcCCCEEEEeccCCc-hHHHHHHHHHHHc--CCceecccCCCCCHHHHHHHHHhHHHHHHHHHhc-----c
Confidence 344566778899999999876553 2334444444444 3333 3345678889999999999988653210 0
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
....+. .+....+..+++.. ..+.++..+||+ ++.++.+++.+|||.+.+|+++..
T Consensus 139 ~g~~~~-~~~~~~l~~i~~~~-~~~~~i~~~gGi-~~~~~~~~~~~Gad~iVVGr~I~~ 194 (213)
T d1q6oa_ 139 AQAAGV-AWGEADITAIKRLS-DMGFKVTVTGGL-ALEDLPLFKGIPIHVFIAGRSIRD 194 (213)
T ss_dssp HHHTTC-CCCHHHHHHHHHHH-HTTCEEEEESSC-CGGGGGGGTTSCCSEEEESHHHHT
T ss_pred cCcCCe-eCCHHHHHHHHHhh-ccCceEecCCCc-CcCCHHHHHHcCCCEEEEChhhcC
Confidence 011111 12233444444443 356889998887 578999999999999999998754
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=96.98 E-value=0.021 Score=52.01 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCCce--EEE-cccCCHH----HHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPELD--VIG-GNVVTMY----QAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~~~--Vi~-g~V~t~e----~a~~l~~aGad~I~v 316 (505)
....++.+++.|++-+.+... .|....+.+.++.+++..++.+ ||. ....+.+ .++.+.++|+|+|+.
T Consensus 105 K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKT 184 (251)
T d1o0ya_ 105 KAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKT 184 (251)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHHHHHHHHHHhCcceeec
Confidence 455677888999999876553 2455667778888888764443 333 1222333 345677899999988
Q ss_pred ccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 317 GMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.|-+. +..++..+...++... .++.|=++|||+|..++.+.+.+||+-++-
T Consensus 185 STGf~~----------~gat~e~V~~m~~~~~-~~~giKasGGIrt~~~a~~~i~aGa~riGt 236 (251)
T d1o0ya_ 185 STGFGT----------GGATAEDVHLMKWIVG-DEMGVKASGGIRTFEDAVKMIMYGADRIGT 236 (251)
T ss_dssp CCSSSS----------CCCCHHHHHHHHHHHC-TTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCCC----------CCcCHHHHHHHHHHhC-CCceEeccCCcCCHHHHHHHHHHhhHHhCC
Confidence 744211 1134444444444443 358899999999999999999999996543
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.96 E-value=0.0082 Score=54.32 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=71.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhC--CC--ceEEE-cccCCHHH----HHHHHHcCCCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTY--PE--LDVIG-GNVVTMYQ----AQNLIEAGVDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~--~~--~~Vi~-g~V~t~e~----a~~l~~aGad~I~v~ 317 (505)
.....++.+++.|++-+-+....+.. ....+.+..+.+.. .+ +.||. ....+.+. ++.+.++|+|+|+-+
T Consensus 89 ~k~~E~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTS 168 (234)
T d1n7ka_ 89 VKLVEAQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTS 168 (234)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESC
T ss_pred HHHHHHHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeec
Confidence 35566778888999987664433211 23333333333321 12 33444 22335443 345667999999876
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
.|-+. .| .+...+..+.+.....++.|=++|||+|..|..+.+.+||+-++-
T Consensus 169 TG~~~---------~g-at~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGt 220 (234)
T d1n7ka_ 169 TGVYT---------KG-GDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGT 220 (234)
T ss_dssp CSSSC---------CC-CSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred ccccC---------CC-CCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceeec
Confidence 43211 11 122333333344444568999999999999999999999995443
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.91 E-value=0.0016 Score=59.12 Aligned_cols=117 Identities=18% Similarity=0.233 Sum_probs=73.4
Q ss_pred HHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccccccc-
Q 010640 254 EHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAV- 332 (505)
Q Consensus 254 ~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~- 332 (505)
+.+.+.++|.+++...... .. ..|+.++. .++...+.+.+++..+.+.|+|++.+|. +..+....+.
T Consensus 87 ~lA~~~~adGvHl~~~d~~----~~---~~r~~~~~-~iig~S~h~~~e~~~a~~~g~DYi~~gp----vf~T~sK~~~~ 154 (226)
T d2tpsa_ 87 ELALNLKADGIHIGQEDAN----AK---EVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGP----IYPTETKKDTR 154 (226)
T ss_dssp HHHHHHTCSEEEECTTSSC----HH---HHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECC----SSCCCSSSSCC
T ss_pred HHHhhccCCEEEeccccch----hh---hhhhcccc-eeeeeeccchHHHHHHHhCcCCeEEEec----ccccccccccc
Confidence 3455668888877332211 12 23344333 3555577899999999999999998762 1111111111
Q ss_pred CcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 333 GRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 333 g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.......+..+.+ ...++||++-||| |..++.+++.+||++|.+.+.+..
T Consensus 155 ~~~~~~~~~~~~~--~~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~ 204 (226)
T d2tpsa_ 155 AVQGVSLIEAVRR--QGISIPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQ 204 (226)
T ss_dssp CCCTTHHHHHHHH--TTCCCCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHT
T ss_pred cccccchhHHHHH--hcCCCCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhc
Confidence 1112222322221 2257999999999 889999999999999999988764
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=96.91 E-value=0.0029 Score=62.00 Aligned_cols=137 Identities=13% Similarity=0.082 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEE-c-cc-----
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIG-G-NV----- 297 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~-g-~V----- 297 (505)
+.+.+..+.++|.|.|+|+.++|+ + +-.++.++.+|+.+++-.++. - +.
T Consensus 161 f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~ 240 (380)
T d1q45a_ 161 YCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAIDHLD 240 (380)
T ss_dssp HHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGG
T ss_pred HHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeecccccc
Confidence 556677888899999999975532 1 345788888888764322222 1 10
Q ss_pred ---CC-HH----HHHH------HHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCH
Q 010640 298 ---VT-MY----QAQN------LIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNS 363 (505)
Q Consensus 298 ---~t-~e----~a~~------l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~ 363 (505)
.. .+ .+.. +...+++++.++.+... .......+...+.......+.......++||+..||+ ++
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~ 318 (380)
T d1q45a_ 241 ATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYH-AYGQTESGRQGSDEEEAKLMKSLRMAYNGTFMSSGGF-NK 318 (380)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC----------------CHHHHHHHHHHHHSCSCEEEESSC-CH
T ss_pred cccccchhhhhhhhhhhhHhhhhccccceeEEeccCccc-ccccccccccCchhhhHHHHHHHhhccCCcEEeCCCC-CH
Confidence 01 11 1111 12257778877632211 1001111111111111212222233457999999997 79
Q ss_pred HHHHHHHHhC-CCEEEecccccCCC
Q 010640 364 GHIVKALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 364 ~di~kal~lG-A~~V~~G~~f~~~~ 387 (505)
....++|+.| ||+|.+|++|+.-.
T Consensus 319 ~~ae~~l~~G~~DlV~~gR~liaDP 343 (380)
T d1q45a_ 319 ELGMQAVQQGDADLVSYGRLFIANP 343 (380)
T ss_dssp HHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHHHHHcCCccchhhhHHHHHCc
Confidence 9999999998 99999999998643
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.82 E-value=0.0083 Score=53.77 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHCCCCeeEE-eeCCeeeeEEeec-hhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcC
Q 010640 183 YDLGQIDEVLEKNDVDFVVL-EKDGERLDVVTRE-DVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAG 260 (505)
Q Consensus 183 ~~l~~a~~~l~~~~i~~lpV-vd~g~l~GiIt~~-dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaG 260 (505)
..+.+.++.+.+.+++.+=+ +-||+++==+|.. +.++..... ..+.+-+-+- ..+....++.+.++|
T Consensus 14 ~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~----------t~~~~dvHLM-v~~P~~~i~~~~~~g 82 (217)
T d2flia1 14 ANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKH----------SKLVFDCHLM-VVDPERYVEAFAQAG 82 (217)
T ss_dssp GGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTT----------CCSEEEEEEE-SSSGGGGHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhc----------CCCceEeEEE-ecCHHHHHHHHHHcC
Confidence 35788888999989986654 3233332112221 333333221 1122222111 112345678888999
Q ss_pred ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cccCCHHHHHHHHHcCCCEEEE-ccCCcceeecccccccCcChH
Q 010640 261 VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GNVVTMYQAQNLIEAGVDGLRV-GMGSGSICTTQEVCAVGRGQA 337 (505)
Q Consensus 261 ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~~~~~~g~g~p~~ 337 (505)
++.+.+|..... ...+.++.+++. ++.+.+ ..-+..+....... -+|.+.+ +..+|.... . +-...+
T Consensus 83 a~~i~~H~E~~~--~~~~~i~~i~~~--g~~~Gial~p~T~~~~~~~~l~-~id~vliM~V~pG~~Gq--~---f~~~~~ 152 (217)
T d2flia1 83 ADIMTIHTESTR--HIHGALQKIKAA--GMKAGVVINPGTPATALEPLLD-LVDQVLIMTVNPGFGGQ--A---FIPECL 152 (217)
T ss_dssp CSEEEEEGGGCS--CHHHHHHHHHHT--TSEEEEEECTTSCGGGGGGGTT-TCSEEEEESSCTTCSSC--C---CCGGGH
T ss_pred CcEEEecccccc--CHHHHHHHHHhc--CCeEEEEecCCcchhHHHhHHh-hcCEEEEEEEcCccccc--c---cchhhH
Confidence 999999875432 356677777776 444322 22234444444433 3777655 444432111 1 112345
Q ss_pred HHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 338 TAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 338 ~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.-+.++++..++. +++|..||||. ...+.++..+|||.+.+|+.+.
T Consensus 153 ~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif 200 (217)
T d2flia1 153 EKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLF 200 (217)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHh
Confidence 5566666665543 58899999995 5579999999999999998764
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=96.29 E-value=0.005 Score=59.85 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCC-------------------c-----hhHHHHHHHHHHhCCCceEEEc--cc----
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGN-------------------S-----SFQIEMIKYAKKTYPELDVIGG--NV---- 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~-------------------~-----~~~~~~i~~l~~~~~~~~Vi~g--~V---- 297 (505)
.+.+.+..+.++|.|.|.||.++|. + +-.++.++.+|+.++.-++++. ..
T Consensus 159 ~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~ 238 (364)
T d1icpa_ 159 EFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYN 238 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTT
T ss_pred HHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEeccccccc
Confidence 3566677888999999999976542 1 2347888888888753344331 10
Q ss_pred ---CCHHH------HHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHH
Q 010640 298 ---VTMYQ------AQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVK 368 (505)
Q Consensus 298 ---~t~e~------a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~k 368 (505)
.+.++ +..+...+++.+.+..+.-.... ......+. . ....+..+.|+|+.||+ ++.++.+
T Consensus 239 ~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~---~---~~i~~~~~~~vi~~g~~-~~~~ae~ 308 (364)
T d1icpa_ 239 EAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAW---EKIECTES---L---VPMRKAYKGTFIVAGGY-DREDGNR 308 (364)
T ss_dssp TCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC---------CCCC---S---HHHHHHCCSCEEEESSC-CHHHHHH
T ss_pred CCcCcchHHHHHHHHHHhhccceeeeeeecCcccccc---cccccHHH---H---HHHHHhcCCCEEEECCC-CHHHHHH
Confidence 12222 22333455555554321100000 00000111 1 12223457899997775 8899999
Q ss_pred HHHhC-CCEEEecccccCCC
Q 010640 369 ALVLG-ASTVMMGSFLAGST 387 (505)
Q Consensus 369 al~lG-A~~V~~G~~f~~~~ 387 (505)
+++-| ||+|++|++|+.-.
T Consensus 309 ~l~~g~aD~V~~gR~~iadP 328 (364)
T d1icpa_ 309 ALIEDRADLVAYGRLFISNP 328 (364)
T ss_dssp HHHTTSCSEEEESHHHHHCT
T ss_pred HHHcCCCceehhHHHHHHCc
Confidence 99987 99999999998643
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.19 E-value=0.015 Score=52.46 Aligned_cols=129 Identities=19% Similarity=0.273 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHcCCCEEEE-ccCCccee
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEAGVDGLRV-GMGSGSIC 324 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~ 324 (505)
+....++.+.++|++.+.+|..........+.++.+++. ++.+ ....-+..+....+... +|.|.+ +..+|...
T Consensus 79 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~--g~k~Gialnp~T~~~~l~~~l~~-vD~VllM~V~PGf~G 155 (230)
T d1rpxa_ 79 EPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSL--GAKAGVVLNPGTPLTAIEYVLDA-VDLVLIMSVNPGFGG 155 (230)
T ss_dssp SHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHT--TSEEEEEECTTCCGGGGTTTTTT-CSEEEEESSCTTCSS
T ss_pred chhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHHhh-CCEEEEEEecCCccc
Confidence 466888999999999999998654444566778888887 4443 22333445555554443 888765 44333211
Q ss_pred ecccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
+ .+-..++.-+.++++...+ .++.|-.||||... .+.++..+||+.+.+|+.+..
T Consensus 156 --Q---~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~-~i~~l~~~Gad~~V~GS~if~ 212 (230)
T d1rpxa_ 156 --Q---SFIESQVKKISDLRKICAERGLNPWIEVDGGVGPK-NAYKVIEAGANALVAGSAVFG 212 (230)
T ss_dssp --C---CCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTT-THHHHHHHTCCEEEESHHHHT
T ss_pred --c---hhhhhhHHHHHHHHHHHHhcCCceEEEEECCcCHH-HHHHHHHcCCCEEEEChHHHC
Confidence 1 1112355566666655543 35889999998654 788889999999999998653
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.073 Score=48.10 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=89.7
Q ss_pred EEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC----CCceEEE---cccCC---HHHHHHHHH
Q 010640 239 VGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY----PELDVIG---GNVVT---MYQAQNLIE 308 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~----~~~~Vi~---g~V~t---~e~a~~l~~ 308 (505)
+.+-+|+.-...+.+..++++|++++=++.+||......+.++.+|+.. ..+.+.. |...| .++...+.+
T Consensus 6 IIaTiGPas~~~~~l~~li~aGvdv~RlN~SHg~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~ 85 (246)
T d1e0ta2 6 IVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCE 85 (246)
T ss_dssp EEEECCGGGCSHHHHHHHHHHTEEEEEEETTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHH
T ss_pred EEEeeCCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHH
Confidence 4456666666788999999999999999999997766666777666542 1334443 33334 445566779
Q ss_pred cCCCEEEEcc-----------------CCcce-eec------------------------ccccccCcCh---HHHHHHH
Q 010640 309 AGVDGLRVGM-----------------GSGSI-CTT------------------------QEVCAVGRGQ---ATAVYKV 343 (505)
Q Consensus 309 aGad~I~v~~-----------------g~g~~-~~~------------------------~~~~g~g~p~---~~~l~~v 343 (505)
.|+|+|.++. ++... ... |.-.|.-+|. +..-..+
T Consensus 86 ~~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImIaRGDLg~ei~~e~vp~~Qk~i 165 (246)
T d1e0ta2 86 QGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMM 165 (246)
T ss_dssp HTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEEEccchhhhCCHHHHHHHHHHH
Confidence 9999998873 11110 000 0000110121 1111233
Q ss_pred HHHHhhcCCcEEecCCCCC------------HHHHHHHHHhCCCEEEecc
Q 010640 344 SSIAAQSGVPVIADGGISN------------SGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 344 ~~~~~~~~ipvIa~GGI~~------------~~di~kal~lGA~~V~~G~ 381 (505)
.+.|...+.|+|.+..+.. -.|++.|+..|||+||+..
T Consensus 166 i~~~~~~~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~ 215 (246)
T d1e0ta2 166 IEKCIRARKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSG 215 (246)
T ss_dssp HHHHHHHTCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHhCCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEcc
Confidence 4556667899999987765 4699999999999999873
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.10 E-value=0.046 Score=49.47 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.+ ...+.|+.++.|-+...+..+..+.+..+++.+ ++||+.+.. .+......+..+|||+|-+-. .
T Consensus 65 ~~~~a-~~~~~gA~aiSVLTd~~~F~Gs~~dl~~v~~~~-~~PiLrKDFIid~~QI~ea~~~GADaiLLI~--------~ 134 (247)
T d1a53a_ 65 PIEYS-KFMERYAVGLSILTEEKYFNGSYETLRKIASSV-SIPILMKDFIVKESQIDDAYNLGADTVLLIV--------K 134 (247)
T ss_dssp HHHHH-HHHTTTCSEEEEECCCTTTCCCHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHHTCSEEEEEG--------G
T ss_pred HHHHH-HHHHhCCCeEEEecCccccccchHHHHHHHhcc-ccceeecccccChHHHHHHHHhhcchhhhhh--------h
Confidence 34444 466789999988665444445577888888887 899999865 588899999999999996531 1
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+ + ...+.+..+.++..++.++. =++|..|+.+|+.+||+.+++=.+=+
T Consensus 135 ~L-----~-~~~l~~l~~~a~~lgl~~Lv--Evh~~~El~~a~~~~a~iIGINnRnL 183 (247)
T d1a53a_ 135 IL-----T-ERELESLLEYARSYGMEPLI--EINDENDLDIALRIGARFIGINSRDL 183 (247)
T ss_dssp GS-----C-HHHHHHHHHHHHTTTCCCEE--EECSHHHHHHHHHTTCSEEEEESBCT
T ss_pred hc-----c-HHHHHHHHHHHHHHhhhHHh--hcCCHHHHHHHHhCCCCeEeeeccCh
Confidence 11 1 23455667778888888888 79999999999999999998875533
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.08 E-value=0.01 Score=50.82 Aligned_cols=90 Identities=11% Similarity=0.139 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhh--cCCc
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ--SGVP 353 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~--~~ip 353 (505)
+.+.++.+++..|..++.+ +|.+.++++.+.++|+|.|.+.+ ++..+ +.++.+..+. -.+.
T Consensus 66 i~~~i~~~k~~~~~~~I~V-Ev~s~~q~~~a~~~~~diImLDN-------------~sp~~---~k~~v~~~~~~~~~i~ 128 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEV-EVDSLEQLDAVLPEKPELILLDN-------------FAVWQ---TQTAVQRRDSRAPTVM 128 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEE-EESSHHHHHHHGGGCCSEEEEET-------------CCHHH---HHHHHHHHHHHCTTCE
T ss_pred hhhhhhhhhhhcCCCceEE-EeccHHHhhhhhhcCCcEEEecC-------------cChHh---HHHHHHHhhccCCeeE
Confidence 4567777788777777776 89999999999999999997653 22222 2233332222 2377
Q ss_pred EEecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 354 VIADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 354 vIa~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
+-++||| +...+.+....|+|.+.+|...
T Consensus 129 lEaSGgI-~~~ni~~ya~~GvD~IS~galt 157 (169)
T d1qpoa1 129 LESSGGL-SLQTAATYAETGVDYLAVGALT 157 (169)
T ss_dssp EEEESSC-CTTTHHHHHHTTCSEEECGGGT
T ss_pred EEEeCCC-CHHHHHHHHHcCCCEEECCccc
Confidence 8899998 8888999999999999999764
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=95.96 E-value=0.013 Score=57.38 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.3
Q ss_pred cCCcEEecCCCCCHHHHHHHHHhC-CCEEEecccccCC
Q 010640 350 SGVPVIADGGISNSGHIVKALVLG-ASTVMMGSFLAGS 386 (505)
Q Consensus 350 ~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~~f~~~ 386 (505)
.++|||+.|||.+..++.+.+..| ||+|.+|++|+.-
T Consensus 316 ~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaD 353 (399)
T d1oyaa_ 316 WKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISN 353 (399)
T ss_dssp CCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHC
T ss_pred hCCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHC
Confidence 579999999999988888888664 9999999999753
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=95.93 E-value=0.11 Score=47.15 Aligned_cols=146 Identities=21% Similarity=0.272 Sum_probs=93.1
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh---C-CCceEEEccc----CC---HHHHH
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT---Y-PELDVIGGNV----VT---MYQAQ 304 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~---~-~~~~Vi~g~V----~t---~e~a~ 304 (505)
+..+.+-+|+.-...+.+..++++|++++=++.+||......+.++.+|+. . ..+.++.... .+ .++..
T Consensus 20 ~TKIIaTiGPas~~~~~l~~li~aGvdv~RiN~SHg~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~ 99 (258)
T d1pkla2 20 AARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQ 99 (258)
T ss_dssp CSEEEEECCGGGCSHHHHHHHHHHTEEEEEEETTSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHH
T ss_pred CCcEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHH
Confidence 345666777766678899999999999999999999876666666666663 3 2344554322 23 44566
Q ss_pred HHHHcCCCEEEEcc-CC--------------cc-e-------------------------eecccccccCcChHH---HH
Q 010640 305 NLIEAGVDGLRVGM-GS--------------GS-I-------------------------CTTQEVCAVGRGQAT---AV 340 (505)
Q Consensus 305 ~l~~aGad~I~v~~-g~--------------g~-~-------------------------~~~~~~~g~g~p~~~---~l 340 (505)
.+.+.|+|++.++. .. |. + -..|.-.|.-+|.-. .=
T Consensus 100 ~a~~~~vD~ialSFVrs~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~sDgImIaRGDLg~ei~~e~vp~~Q 179 (258)
T d1pkla2 100 FGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQ 179 (258)
T ss_dssp HHHHHTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEEEECHHHHTTTSCHHHHHHHH
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhhCCeeeEechhhhhhcchhhhhhHH
Confidence 77889999998873 11 10 0 000111112122111 11
Q ss_pred HHHHHHHhhcCCcEEecCCCC------------CHHHHHHHHHhCCCEEEecc
Q 010640 341 YKVSSIAAQSGVPVIADGGIS------------NSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 341 ~~v~~~~~~~~ipvIa~GGI~------------~~~di~kal~lGA~~V~~G~ 381 (505)
..+.+.|+..+.|+|.+.-+. --.|++.|+..|||+||+..
T Consensus 180 k~Ii~~~~~~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs~ 232 (258)
T d1pkla2 180 KILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSG 232 (258)
T ss_dssp HHHHHHHHHHTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESH
T ss_pred HHHHHHHHHcCCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEcc
Confidence 233455667789999987443 24699999999999999973
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.018 Score=52.47 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhC--CCc--eEEE--cccCCHHH---H-HHHHHcCCC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTY--PEL--DVIG--GNVVTMYQ---A-QNLIEAGVD 312 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~--~~~--~Vi~--g~V~t~e~---a-~~l~~aGad 312 (505)
.....++.+++.|++-|-+... .|....+.+.++.+++.+ .+. .||. +...+.+. + +.+.++|+|
T Consensus 85 ~K~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGad 164 (250)
T d1p1xa_ 85 IALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGAD 164 (250)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCCeEEEeecchhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcC
Confidence 3556677888999998866543 244455566666666542 133 4444 22233332 2 445789999
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHhh----cCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQ----SGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~----~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+|+.+.|-+.. ..+...+....+..+. .++.|=++|||+|..++.+.+.+||+-.
T Consensus 165 FvKTSTG~~~~----------gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~i 223 (250)
T d1p1xa_ 165 FIKTSTGKVAV----------NATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELF 223 (250)
T ss_dssp EEECCCSCSSC----------CCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHH
T ss_pred eEEecCCcCCC----------CCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHHh
Confidence 99887542211 1233444434444332 2588999999999999999999998743
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.73 E-value=0.041 Score=46.76 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEE
Q 010640 276 QIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVI 355 (505)
Q Consensus 276 ~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvI 355 (505)
..+.+..+++..|..+|.+ ++.+.++++.+.++|+|.|.+.+ +. ++.+.++.+... .++.+-
T Consensus 66 ~~~~~~~~~~~~~~~~IeV-Ev~~~~~~~~a~~~g~diImLDN-------------~~---pe~~~~av~~i~-~~~~lE 127 (167)
T d1qapa1 66 VRQAVEKAFWLHPDVPVEV-EVENLDELDDALKAGADIIMLDN-------------FN---TDQMREAVKRVN-GQARLE 127 (167)
T ss_dssp HHHHHHHHHHHSTTSCEEE-EESSHHHHHHHHHTTCSEEEESS-------------CC---HHHHHHHHHTTC-TTCCEE
T ss_pred hhhhhHHHhhcCCCceEEE-ecCcHHHHHHHHhcCCcEEEecC-------------CC---HHHHHHHHHhcC-CceEEE
Confidence 4466666777767777766 89999999999999999997653 22 223333333322 247888
Q ss_pred ecCCCCCHHHHHHHHHhCCCEEEecccc
Q 010640 356 ADGGISNSGHIVKALVLGASTVMMGSFL 383 (505)
Q Consensus 356 a~GGI~~~~di~kal~lGA~~V~~G~~f 383 (505)
++||| +...+.+.-..|+|.+.+|.+.
T Consensus 128 aSGgI-~~~ni~~ya~~GVD~IS~galt 154 (167)
T d1qapa1 128 VSGNV-TAETLREFAETGVDFISVGALT 154 (167)
T ss_dssp ECCCS-CHHHHHHHHHTTCSEEECSHHH
T ss_pred EeCCC-CHHHHHHHHHcCCCEEECCccc
Confidence 99886 7788989999999999999864
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.097 Score=47.34 Aligned_cols=120 Identities=11% Similarity=0.074 Sum_probs=88.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.+ ...+.|+.++.+-+...+..+..+.++.+++.. ++|++.+.. .+......+..+|||+|-+-. .
T Consensus 70 p~~~a-~~~~~gA~aiSVLTe~~~F~Gs~~~l~~v~~~~-~~PiLrKDFIid~~QI~ear~~GADavLLI~--------~ 139 (254)
T d1piia2 70 PARIA-AIYKHYASAISVLTDEKYFQGSFNFLPIVSQIA-PQPILCKDFIIDPYQIYLARYYQADACLLML--------S 139 (254)
T ss_dssp HHHHH-HHHTTTCSEEEEECCSTTTCCCTTHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEEET--------T
T ss_pred hHHHH-HHHHhccCceEEecccccCCCCHHHHHHHHhcc-ccccchhcccCcHHHHHHHHhhccchhhhhH--------h
Confidence 44444 467889999988765444445567777788886 799999865 588899999999999996531 1
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.+ + -..+.+..+.+...+..++. =+++..++.+|+.+||+.+++=.+=+.+
T Consensus 140 ~L-----~-~~~l~~l~~~a~~lgl~~LV--Evh~~~El~~a~~~~a~iIGINnRnL~t 190 (254)
T d1piia2 140 VL-----D-DDQYRQLAAVAHSLEMGVLT--EVSNEEEQERAIALGAKVVGINNRDLRD 190 (254)
T ss_dssp TC-----C-HHHHHHHHHHHHHTTCEEEE--EECSHHHHHHHHHTTCSEEEEESEETTT
T ss_pred hh-----c-ccHHHHHHHHHHHHhhhHHH--hhccHHHHHHHHhhcccccCccccchhh
Confidence 11 1 12344556667778888888 8999999999999999998887664433
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.083 Score=46.93 Aligned_cols=123 Identities=16% Similarity=0.121 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
+..+.++.+...+.+++ |-.+. ...-+..++.+++. ++++-+..+.|.+.+..+.++|+++|.. ..+|
T Consensus 67 ~m~~~a~~l~~~~~ni~-VKIP~--t~~G~~ai~~L~~~--Gi~~n~Tavfs~~Qa~~Aa~aga~yisp-------y~gR 134 (218)
T d1vpxa_ 67 GMVREARELAQISEYVV-IKIPM--TPDGIKAVKTLSAE--GIKTNVTLVFSPAQAILAAKAGATYVSP-------FVGR 134 (218)
T ss_dssp HHHHHHHHHHTTCTTEE-EEEES--SHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHHTCSEEEE-------BHHH
T ss_pred HHHHHHHHHhccccceE-EEecc--cccchHHHHHHHHc--CCceeeEEecCHHHHHHHHhcCCCEEEe-------eecc
Confidence 34455555655555543 22221 12345677778777 7899888889999999999999998832 2233
Q ss_pred cccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
..++|......+.++.+..+.. +..|++ +.+++..++.+|+.+|||.+-+...++
T Consensus 135 -~~d~g~d~~~~i~~~~~~~~~~~~~tkil~-AS~r~~~~v~~a~~~G~d~iTip~~v~ 191 (218)
T d1vpxa_ 135 -MDDLSNDGMRMLGEIVEIYNNYGFETEIIA-ASIRHPMHVVEAALMGVDIVTMPFAVL 191 (218)
T ss_dssp -HHHTTSCHHHHHHHHHHHHHHHTCSCEEEE-BSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred -hhhhcccchhhHHHHHHHHhhhcccceeee-eccCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 3345666777777777766544 456666 689999999999999999999886654
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.18 E-value=0.035 Score=49.59 Aligned_cols=127 Identities=12% Similarity=0.139 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHHHHHHHcCCCEEEE-ccCCcceee
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQAQNLIEAGVDGLRV-GMGSGSICT 325 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a~~l~~aGad~I~v-~~g~g~~~~ 325 (505)
....++.+.++|++.+.+|............+.++++. ++.+. ...-+..+....+++ -+|.+.+ +..+|....
T Consensus 72 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~--g~~~Gial~p~T~~~~l~~~l~-~~d~vlvM~V~pG~~GQ 148 (221)
T d1tqja_ 72 PEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIREL--GKKAGAVLNPSTPLDFLEYVLP-VCDLILIMSVNPGFGGQ 148 (221)
T ss_dssp GGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGG-GCSEEEEESSCC----C
T ss_pred HHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHC--CCCEEEEecCCCcHHHHHHHHh-hhcEEEEEEecCCCCCc
Confidence 34678888999999999988544333466777777776 44432 222334455544444 3787766 444432111
Q ss_pred cccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 326 TQEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 326 ~~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+-..++.-+.+.++..++. ++.|-.||||... .+.++..+||+.+.+|+.+.
T Consensus 149 -----~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~~-~i~~l~~~Gad~~V~GS~if 203 (221)
T d1tqja_ 149 -----SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPN-NTWQVLEAGANAIVAGSAVF 203 (221)
T ss_dssp -----CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTT-TTHHHHHHTCCEEEESHHHH
T ss_pred -----ccchhhHHHHHHHHhhhhccccceEEEEECCcCHH-HHHHHHHcCCCEEEEChHHh
Confidence 11123455666666665543 4789999998754 67788889999999999864
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.089 Score=46.78 Aligned_cols=122 Identities=15% Similarity=0.141 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHcCccEE-EEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVV-VLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I-~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+..+.+..+.+.+.+++ -|-. ...-+..++.+.+. ++++-+..+.+...+..+.++|++++.. ..+
T Consensus 67 ~mi~~A~~l~~~~~nv~IKIP~----t~~g~~ai~~L~~~--Gi~vn~Tavfs~~Qa~~Aa~aga~yvsp-------y~g 133 (220)
T d1l6wa_ 67 GMVNDALKLRSIIADIVVKVPV----TAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAP-------YVN 133 (220)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEC----SHHHHHHHHHHHHH--TCCEEEEEECSHHHHHHHHHHTCSEEEE-------BHH
T ss_pred hhHHHHHHHHHhccccEEEeec----cccccchhhhhhhc--ccchhhhhcccHHHHHHhhhcCCcEEee-------eee
Confidence 34455556655554432 2222 23446777788777 7888888889999999999999998843 223
Q ss_pred ccccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
| ...+|.+....+.++.+..+.. +..|++ +.+++..++..+..+|||.+-+...++
T Consensus 134 R-~~d~g~dg~~~i~~~~~~~~~~~~~tkIl~-AS~R~~~~v~~~~~~G~d~iTip~~v~ 191 (220)
T d1l6wa_ 134 R-IDAQGGSGIQTVTDLHQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_dssp H-HHHTTSCHHHHHHHHHHHHHHHCTTCEEEE-BCCSSHHHHHHHHHTTCSEEEECHHHH
T ss_pred e-hhhcccCChHHHHHHHHHHHhcCCCceEee-hhcCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 3 3446667777777777665433 355555 799999999999999999999987654
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=95.09 E-value=0.033 Score=50.06 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 351 GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 351 ~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
++|++..+||++++++.++ +.|||+|.+|++|.
T Consensus 181 ~~Pl~VGFGIst~e~a~~v-~~~ADgVVVGSAiv 213 (229)
T d1viza_ 181 TSTLFYGGGIKDAETAKQY-AEHADVIVVGNAVY 213 (229)
T ss_dssp SSEEEEESSCCSHHHHHHH-HTTCSEEEECTHHH
T ss_pred CcceEEEcccCCHHHHHHH-HcCCCEEEECHHHH
Confidence 5899999999999998665 57999999999984
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.43 Score=43.02 Aligned_cols=141 Identities=17% Similarity=0.151 Sum_probs=90.2
Q ss_pred CcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCC
Q 010640 235 GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGV 311 (505)
Q Consensus 235 ~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGa 311 (505)
++..+|.-+..+ ....++.+..+|.|++++|..||.. ......+..++.. +++.++ =.-.+...++++.++|+
T Consensus 14 g~~~~G~~~~~~--~p~~~ei~a~~G~Dfv~iD~EHg~~~~~~~~~~i~a~~~~--g~~~~VRvp~~~~~~i~~~LD~Ga 89 (253)
T d1dxea_ 14 KQVQIGCWSALS--NPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGS--ASAPVVRVPTNEPVIIKRLLDIGF 89 (253)
T ss_dssp TCCEEEEEECSC--SHHHHHHHTTSCCSEEEEESSSSSCCHHHHHHHHHHTTTC--SSEEEEECSSSCHHHHHHHHHTTC
T ss_pred CCCEEEEEecCC--CHHHHHHHHcCCCCEEEEecccCCCChhHHHHHHHHHhcc--CCCceecCCCCCHHHHHHHHhcCc
Confidence 445566555433 4567777888999999999988743 2223333322222 555555 23368899999999999
Q ss_pred CEEEEcc-------------------CCcceeec-----------------cc---------------------------
Q 010640 312 DGLRVGM-------------------GSGSICTT-----------------QE--------------------------- 328 (505)
Q Consensus 312 d~I~v~~-------------------g~g~~~~~-----------------~~--------------------------- 328 (505)
++|.+.. |..+.... ..
T Consensus 90 ~GIivP~v~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~~IEt~~av~nleeI~av~giD~ 169 (253)
T d1dxea_ 90 YNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDG 169 (253)
T ss_dssp CEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTTCCE
T ss_pred cEEEecccCCHHHHHHHHHhheeCCCCCcCcCcceeccccccccccccccccceEEEeecccHHHHHHHHHHhccCCCce
Confidence 9998863 10000000 00
Q ss_pred ----------ccc----cCcCh-HHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecc
Q 010640 329 ----------VCA----VGRGQ-ATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 329 ----------~~g----~g~p~-~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~ 381 (505)
..| +..|. ..++.++.+.+++.++|+-. -..++.++.+.+..|++++.+|+
T Consensus 170 i~iGp~DLs~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~--~~~~~~~~~~~~~~G~~~i~~g~ 235 (253)
T d1dxea_ 170 IFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGI--LAPVEADARRYLEWGATFVAVGS 235 (253)
T ss_dssp EEECHHHHHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEE--ECCSHHHHHHHHHTTCCEEEEEE
T ss_pred EEEecCcHHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEE--ecCCHHHHHHHHHcCCCEEEehH
Confidence 111 22233 34777888888888888744 23589999999999999999996
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.95 E-value=0.078 Score=48.40 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=91.1
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHH---hCCCceE--EE---cccCC---HHHHH
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKK---TYPELDV--IG---GNVVT---MYQAQ 304 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~---~~~~~~V--i~---g~V~t---~e~a~ 304 (505)
+..+.+-+|+.-...+.++.++++|++++=++.+||......+.++.+|+ ..++-++ .. +...+ .++..
T Consensus 20 rTKIIaTiGPas~~~e~l~~li~aG~dv~RlN~SHg~~~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~~di~ 99 (265)
T d1a3xa2 20 RTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLR 99 (265)
T ss_dssp CSEEEEECCTTTCSHHHHHHHHHHTEEEEEEETTSCCHHHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHhhhccCCceeeeccccchhcccchHHHHH
Confidence 34566677777678899999999999999999999977666666666654 3333333 22 22233 44566
Q ss_pred HHHHcCCCEEEEcc-CC---------------cce-eec------------------------ccccccCcChH---HHH
Q 010640 305 NLIEAGVDGLRVGM-GS---------------GSI-CTT------------------------QEVCAVGRGQA---TAV 340 (505)
Q Consensus 305 ~l~~aGad~I~v~~-g~---------------g~~-~~~------------------------~~~~g~g~p~~---~~l 340 (505)
.+.+.|+|+|.++. .. ... ... |.-.|.-+|.- ..-
T Consensus 100 ~a~~~~vD~ialSFVrs~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgimIaRGDLgvei~~e~vp~~Q 179 (265)
T d1a3xa2 100 FGVKNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAVQ 179 (265)
T ss_dssp HHHHTTCCEECCTTCCSHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEEEEEHHHHHHHSCHHHHHHHH
T ss_pred HhhhcccceEeeccCCCHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhhcceeEEEccchhhhccHHHHHHHH
Confidence 78889999998873 10 000 000 00011111211 112
Q ss_pred HHHHHHHhhcCCcEEecCCCC------------CHHHHHHHHHhCCCEEEec
Q 010640 341 YKVSSIAAQSGVPVIADGGIS------------NSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 341 ~~v~~~~~~~~ipvIa~GGI~------------~~~di~kal~lGA~~V~~G 380 (505)
..+...|...+.|+|.+.-+. --.|++.|+..|||+||+.
T Consensus 180 k~Ii~~~~~~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs 231 (265)
T d1a3xa2 180 KKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLS 231 (265)
T ss_dssp HHHHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCS
T ss_pred HHHHHHHHHcCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEc
Confidence 234455666789999986443 2468999999999999987
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=94.94 E-value=0.16 Score=46.51 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCccEEEE-eCCCCCchhHHHHHHHHHHhCCCceEE--EcccCCHHHHHHHHHcCCCEEEE-cc-CCcce
Q 010640 249 DKERLEHLVKAGVNVVVL-DSSQGNSSFQIEMIKYAKKTYPELDVI--GGNVVTMYQAQNLIEAGVDGLRV-GM-GSGSI 323 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i-~~~~g~~~~~~~~i~~l~~~~~~~~Vi--~g~V~t~e~a~~l~~aGad~I~v-~~-g~g~~ 323 (505)
..+.++.+.++|++.+.+ |.+.. ...+....+++. ++..+ +..-.+.+..+.+.+..-.+|.+ +. |-++.
T Consensus 108 ~~~F~~~~~~aGvdGliipDLP~e---e~~~~~~~~~~~--gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~ 182 (271)
T d1ujpa_ 108 PERFFGLFKQAGATGVILPDLPPD---EDPGLVRLAQEI--GLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGM 182 (271)
T ss_dssp HHHHHHHHHHHTCCEEECTTCCGG---GCHHHHHHHHHH--TCEEECEECTTCCHHHHHHHHTTCCSCEEEECC------
T ss_pred chhHhHHHhhcCceeEeccchhhh---hHHHHHHHhhcc--ccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCc
Confidence 456788889999999876 33322 223444555555 44332 44556777888887777677764 52 21111
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
... .. ......+..+ ....++|+...=||.++.|+.++ .|||+|.+||+|..
T Consensus 183 ~~~--~~---~~~~~~i~~i---k~~t~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 183 RER--LP---EEVKDLVRRI---KARTALPVAVGFGVSGKATAAQA--AVADGVVVGSALVR 234 (271)
T ss_dssp -----------CCHHHHHHH---HTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHH
T ss_pred ccc--ch---HHHHHHHHhh---hccccCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHH
Confidence 110 00 0112223222 33457999986699999998764 59999999999963
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=94.67 E-value=0.21 Score=43.91 Aligned_cols=122 Identities=17% Similarity=0.133 Sum_probs=84.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeeccc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQE 328 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~ 328 (505)
..+.++.+.....+++ +-.+. ...-+..++.+++. ++++-+..+.|...+..+.++|++++.. ..+|
T Consensus 75 m~~~a~~l~~~~~ni~-iKIP~--t~~G~~a~~~L~~~--Gi~vn~T~vfs~~Qa~~Aa~aga~yisp-------yvgR- 141 (211)
T d1wx0a1 75 MVAEGRRLAAIHPNIV-VKLPT--TEEGLKACKRLSAE--GIKVNMTLIFSANQALLAARAGASYVSP-------FLGR- 141 (211)
T ss_dssp HHHHHHHHHHHCTTEE-EEEES--SHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHTTCSEEEE-------BHHH-
T ss_pred HHHHHHHHhhcCCceE-EEecc--chhhhHHHHHHhhc--CCceeEEEecCHHHHHHHHHcCCCEEEE-------eeec-
Confidence 3444555545444543 22221 22345667777777 7888888889999999999999998843 3333
Q ss_pred ccccCcChHHHHHHHHHHHhhc--CCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 329 VCAVGRGQATAVYKVSSIAAQS--GVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 329 ~~g~g~p~~~~l~~v~~~~~~~--~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
...+|......+.++.+..+.. +..|++ ..+++..++.++..+|||.+-+...++
T Consensus 142 ~~d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~~~~~~~~~~G~d~vTi~~~v~ 198 (211)
T d1wx0a1 142 VDDISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAALLGADIATMPHAVF 198 (211)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred chhccccchhHHHHHHHHHHhccccceeEe-eecCCHHHHHHHHHcCCCEEEeCHHHH
Confidence 3445667777777777766543 456666 679999999999999999998886553
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.65 E-value=0.03 Score=50.11 Aligned_cols=125 Identities=10% Similarity=0.075 Sum_probs=77.2
Q ss_pred HHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHH-cCCCEEEE-ccCCcceeec
Q 010640 251 ERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIE-AGVDGLRV-GMGSGSICTT 326 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~-aGad~I~v-~~g~g~~~~~ 326 (505)
..++.+.++|++.++++............++.+++. ++.+ ....-+..+....... ..+|.+.+ +..+|....
T Consensus 75 ~~i~~~~~~~~~~i~~~~~~~~~~~~~~~i~~i~~~--g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ- 151 (221)
T d1tqxa_ 75 KYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDN--NLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQ- 151 (221)
T ss_dssp GGGGGCTTSSEEEEEGGGGTTCHHHHHHHHHHHHTT--TCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSC-
T ss_pred hhhhhhhhcCceeEEeehhccccchhhHHHHHHHhc--CCeEEEeeccccccccchhhcccccccEEEEEeeccccccc-
Confidence 345566677888777655433344566667777776 4443 3333345566666554 46888865 444432111
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. +....+.-+.++++.. .++.|-.||||.. ..+.++..+||+.+.+|+.+..
T Consensus 152 -~---f~~~~l~KI~~lr~~~--~~~~I~VDGGIn~-~~i~~l~~aGad~iV~GS~if~ 203 (221)
T d1tqxa_ 152 -S---FMHDMMGKVSFLRKKY--KNLNIQVDGGLNI-ETTEISASHGANIIVAGTSIFN 203 (221)
T ss_dssp -C---CCGGGHHHHHHHHHHC--TTCEEEEESSCCH-HHHHHHHHHTCCEEEESHHHHT
T ss_pred -c---cCcchhHHHHHHHHhc--CCcceEEEcccCH-HhHHHHHHcCCCEEEEChHHHC
Confidence 1 1123455555554432 2478999999954 6799999999999999998643
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=94.56 E-value=0.17 Score=46.01 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCC----CchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQG----NSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g----~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-..+ ..| ......+.++.+|+.. +.|+.+| ++.++++++.+.+.|+|+++||
T Consensus 154 ~~~Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVG 229 (261)
T d1rd5a_ 154 PEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIG 229 (261)
T ss_dssp CHHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred chhHHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCCEEEEC
Confidence 45677777776444443322 222 2346778999999986 8999997 8889999999999999999996
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=94.55 E-value=0.041 Score=50.12 Aligned_cols=74 Identities=24% Similarity=0.252 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 301 YQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 301 e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.|+.+.+.|+|.+.+- ..+.. . ....-...+.+.+....+|+..+|||++.+++.+.+.+||+-|.+
T Consensus 34 ~~a~~~~~~g~dei~iiDl~~~~-------~----~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii 102 (251)
T d1ka9f_ 34 EAARAYDEAGADELVFLDISATH-------E----ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSV 102 (251)
T ss_dssp HHHHHHHHHTCSCEEEEECCSST-------T----CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEEeccccc-------c----cchhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCEEEE
Confidence 45677888899987653 21110 0 011112233455556679999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
||....
T Consensus 103 ~s~~~~ 108 (251)
T d1ka9f_ 103 NSAAVR 108 (251)
T ss_dssp CHHHHH
T ss_pred Cchhhh
Confidence 997643
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=94.51 E-value=0.054 Score=49.32 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 301 YQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 301 e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.|+.+.+.|+|.+.+- .-+. .. +....+..+.+.++..++|+...|||++-.++.+.+.+||+-|.+
T Consensus 34 ~~a~~~~~~g~dei~ivDld~~-------~~----~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kvii 102 (253)
T d1thfd_ 34 ELGKFYSEIGIDELVFLDITAS-------VE----KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp HHHHHHHHTTCCEEEEEESSCS-------SS----HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEEEeeccc-------cc----CcccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEEE
Confidence 56778888999988662 1110 00 111122334455666789999999999999999999999999999
Q ss_pred cccccC
Q 010640 380 GSFLAG 385 (505)
Q Consensus 380 G~~f~~ 385 (505)
||....
T Consensus 103 gs~~~~ 108 (253)
T d1thfd_ 103 NTAAVE 108 (253)
T ss_dssp SHHHHH
T ss_pred ChHHhh
Confidence 997653
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=94.49 E-value=0.068 Score=47.04 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=50.1
Q ss_pred HHHHHHHHcCccEEEEeCCC------C--CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 251 ERLEHLVKAGVNVVVLDSSQ------G--NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 251 e~~~~lieaGad~I~i~~~~------g--~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+.+..+.+.|++.+.+.... + .....++.+.++++.. ++||++ |++.|.+++.++.++|||++.+|
T Consensus 130 ~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~iPVia~GGI~t~~d~~~~~~~GAdgV~iG 204 (222)
T d1y0ea_ 130 EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (222)
T ss_dssp HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 44566778999998763211 1 1123467788888776 899877 78999999999999999999886
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.41 E-value=0.15 Score=48.78 Aligned_cols=116 Identities=22% Similarity=0.274 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcC-ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE--cc-cCCHHHHHHHHHcCCCEEEEccCCccee
Q 010640 249 DKERLEHLVKAG-VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG--GN-VVTMYQAQNLIEAGVDGLRVGMGSGSIC 324 (505)
Q Consensus 249 ~~e~~~~lieaG-ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~--g~-V~t~e~a~~l~~aGad~I~v~~g~g~~~ 324 (505)
..+.+..+.+.| .-++. . +.......+..+..++......+.+ |. -...+.+..+.++|+|.|++....|
T Consensus 57 ~~~mA~~ls~~Gglgvlh--r-~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivID~A~G--- 130 (365)
T d1zfja1 57 GSKMAIAIARAGGLGVIH--K-NMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDTAHG--- 130 (365)
T ss_dssp SHHHHHHHHHTTCEEEEC--C-SSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECCSCT---
T ss_pred CHHHHHHHHHCCCceEEc--C-ccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCCEEEEECCcc---
Confidence 456666777765 44432 2 1222344455555555432222222 21 1245778889999999998863211
Q ss_pred ecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 325 TTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 325 ~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+.......+.++++.. .++|||+ |.+.|++...+++..|||+|-+|
T Consensus 131 -------~s~~~~~~i~~ik~~~--~~~~iIa-GNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 131 -------HSAGVLRKIAEIRAHF--PNRTLIA-GNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp -------TCHHHHHHHHHHHHHC--SSSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred -------cccchhHHHHHHHhhC--CCcceee-cccccHHHHHHHHhcCCceEEee
Confidence 1112233343443322 2578886 99999999999999999999877
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=94.37 E-value=0.28 Score=44.11 Aligned_cols=122 Identities=7% Similarity=0.089 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEccc-CCHHHHHHHHHcCCCEEEEccCCcceeec
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNV-VTMYQAQNLIEAGVDGLRVGMGSGSICTT 326 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V-~t~e~a~~l~~aGad~I~v~~g~g~~~~~ 326 (505)
+..+.++.. +.|+.++.|-+...+..+..+.+..+++.. ++||+.+.. .++.....+..+|||+|-+-.
T Consensus 62 d~~~~a~~y-e~GA~aiSVLTd~~~F~Gs~~~l~~vr~~~-~~PiLrKDFIid~~QI~ea~~~GADaiLLI~-------- 131 (251)
T d1i4na_ 62 SLEDFIRMY-DELADAISILTEKHYFKGDPAFVRAARNLT-CRPILAKDFYIDTVQVKLASSVGADAILIIA-------- 131 (251)
T ss_dssp CHHHHHHHH-HHHCSEEEEECCCSSSCCCTHHHHHHHTTC-CSCEEEECCCCSTHHHHHHHHTTCSEEEEEG--------
T ss_pred cHHHHHHHH-hcCCcceEEecccCCCCCCHHHHHHHhhcc-cCchhhhhhhhCHHHHHHHHhhccceEEeec--------
Confidence 355666544 679999988665444444567777788765 899999875 588888889999999996531
Q ss_pred ccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-hCCCEEEecccccCCC
Q 010640 327 QEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV-LGASTVMMGSFLAGST 387 (505)
Q Consensus 327 ~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~-lGA~~V~~G~~f~~~~ 387 (505)
..+. -..+.+..+.+...++.++. =+++..++.+|+. .||+.+++=.+=+.+.
T Consensus 132 ~~L~------~~~l~~l~~~a~~lgle~Lv--Evh~~~El~~al~~~~a~iiGINnRdL~t~ 185 (251)
T d1i4na_ 132 RILT------AEQIKEIYEAAEELGMDSLV--EVHSREDLEKVFSVIRPKIIGINTRDLDTF 185 (251)
T ss_dssp GGSC------HHHHHHHHHHHHTTTCEEEE--EECSHHHHHHHHTTCCCSEEEEECBCTTTC
T ss_pred cccc------HHHHHHHHHHHHHhCCeeec--ccCCHHHHHHHhcccccceeeeeecchhcc
Confidence 1111 12345566777788998888 6999999999995 5899999877655443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.27 E-value=0.17 Score=44.89 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=78.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceE--EEcccCCHHHHHHHHHc--CCCEEEE-ccCCcce
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDV--IGGNVVTMYQAQNLIEA--GVDGLRV-GMGSGSI 323 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~V--i~g~V~t~e~a~~l~~a--Gad~I~v-~~g~g~~ 323 (505)
..+.++.+.++|++.+.+|..... ......+..+++. ++.. ....-...+....+... .+|.+.+ +..+|..
T Consensus 71 p~~~i~~~~~~g~~~I~~H~E~~~-~~~~~~i~~i~~~--g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~ 147 (220)
T d1h1ya_ 71 PSDYVEPLAKAGASGFTFHIEVSR-DNWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFG 147 (220)
T ss_dssp GGGGHHHHHHHTCSEEEEEGGGCT-TTHHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCS
T ss_pred hhhhhHHhhhcccceeeecccccc-hhHHHHHHHHHHc--CCCcceeeccccchhHHHHHHhcccccceEEEEecCCCCc
Confidence 335677888999999999885321 1244566777776 4433 33333455555555543 4787765 3333321
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.. .+ -..++.-+.++++.. .+++|.+||||... .+..+..+||+.+.+|+.+..
T Consensus 148 GQ--~f---~~~~l~kI~~l~~~~--~~~~I~VDGGIn~~-~i~~l~~aGad~~V~GS~if~ 201 (220)
T d1h1ya_ 148 GQ--KF---MPEMMEKVRALRKKY--PSLDIEVDGGLGPS-TIDVAASAGANCIVAGSSIFG 201 (220)
T ss_dssp SC--CC---CGGGHHHHHHHHHHC--TTSEEEEESSCSTT-THHHHHHHTCCEEEESHHHHT
T ss_pred cc--cc---chhhhHHHHHHHhcC--CCceEEEEecCCHH-HHHHHHHCCCCEEEECHHHHC
Confidence 11 11 113344455554432 25899999999765 788889999999999998643
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.20 E-value=0.076 Score=48.29 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|+|.+.+- ..+. ..+ ..+....+ .+.+....+|+..+|||++-+++.+++.+||+-|.
T Consensus 35 ~~~a~~~~~~gadei~ivDl~~~-------~~~-~~~~~~~i---~~i~~~~~~pi~~gGGIr~~e~~~~ll~~G~~kVi 103 (252)
T d1h5ya_ 35 VEMAVRYEEEGADEIAILDITAA-------PEG-RATFIDSV---KRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVS 103 (252)
T ss_dssp HHHHHHHHHTTCSCEEEEECCCC-------TTT-HHHHHHHH---HHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHCCCCEEEEEecccc-------ccc-cccHHHHH---HHHHhhcCCcceeecccchhhhhhhHhhcCCcEEE
Confidence 356778888999977552 2111 000 01222333 34445567999999999999999999999999999
Q ss_pred ecccccC
Q 010640 379 MGSFLAG 385 (505)
Q Consensus 379 ~G~~f~~ 385 (505)
+||....
T Consensus 104 i~s~~~~ 110 (252)
T d1h5ya_ 104 VNTAAVR 110 (252)
T ss_dssp ESHHHHH
T ss_pred ecccccC
Confidence 9987543
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.15 E-value=0.047 Score=46.58 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCC-CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhc--CC
Q 010640 276 QIEMIKYAKKTYP-ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQS--GV 352 (505)
Q Consensus 276 ~~~~i~~l~~~~~-~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~--~i 352 (505)
..+.++.+++..| ..++.+ ++.+.+++..+.++|+|.|.+.+ +. ++.+.++.+..+.. ++
T Consensus 64 ~~~~~~~~~~~~~~~~~I~V-Ev~~~~e~~~a~~~g~d~i~LDn-------------~~---pe~~k~~~~~lk~~~~~i 126 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEV-EVENLEDALRAVEAGADIVMLDN-------------LS---PEEVKDISRRIKDINPNV 126 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEE-EESSHHHHHHHHHTTCSEEEEES-------------CC---HHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhhCCCCceEEE-EeCcHHHHHHHHhcCccEEEEcC-------------cC---hhhHhHHHHHHHhhCCcE
Confidence 4566677776654 345655 88999999999999999996642 21 23333333333322 47
Q ss_pred cEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 353 PVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 353 pvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
.+-+|||| +...+.+.-..|+|.+.+|.+..
T Consensus 127 ~lEaSGGI-~~~ni~~~a~~GVD~Is~g~lt~ 157 (170)
T d1o4ua1 127 IVEVSGGI-TEENVSLYDFETVDVISSSRLTL 157 (170)
T ss_dssp EEEEEECC-CTTTGGGGCCTTCCEEEEGGGTS
T ss_pred EEEEECCC-CHHHHHHHHHcCCCEEEcCcccc
Confidence 78898997 55666666779999999998753
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.09 E-value=0.24 Score=44.69 Aligned_cols=68 Identities=25% Similarity=0.334 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCccEEEEeCC---CC----CchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSS---QG----NSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~---~g----~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-+.+. .| .+....+.++++|+.. +.|+.+| ++.++++++.+.+.|+|+++||
T Consensus 145 ~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 220 (248)
T d1geqa_ 145 PDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred hhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhc-ccceeeecccCCHHHHHHHHhcCCCEEEEC
Confidence 446777676655445433221 22 2356788999999986 8999997 7889999999999999999996
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=93.94 E-value=0.29 Score=46.11 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEccCCcceeecc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQ 327 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~ 327 (505)
..+.+..+.++|--.+ ++. +.......+.++.+++....+.+-+| +-.+.+.+..+.++|+|.+++....|
T Consensus 50 ~~~mA~als~~GGlGv-i~r-~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G------ 121 (330)
T d1vrda1 50 EAALAKALAREGGIGI-IHK-NLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHG------ 121 (330)
T ss_dssp SHHHHHHHHTTTCEEE-ECS-SSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCC------
T ss_pred CHHHHHHHHHCCCeEE-eec-ccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEEEEecCCC------
Confidence 4567777777764332 222 22234455556666554211222222 22357788889999999998863222
Q ss_pred cccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 328 EVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 328 ~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
+.......+..+++.. .++|||+ |.+.++....++..+|||+|-+|
T Consensus 122 ----~~~~~~~~ik~ik~~~--~~~~via-GnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 122 ----HSRRVIETLEMIKADY--PDLPVVA-GNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp ----SSHHHHHHHHHHHHHC--TTSCEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred ----CchhHHHHHHHHHHhC--CCCCEEe-echhHHHHHHHHHHcCCCEEeec
Confidence 1112233344443322 2588888 88999999999899999999775
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=93.94 E-value=0.034 Score=54.09 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=50.2
Q ss_pred CHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 299 TMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 299 t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
+.+.+..|.++|+|++++... .|+.......+..+++.. .++|||+ |++.|++.....+..|||+|-
T Consensus 152 ~~~ra~~L~~aG~D~ivID~A----------hG~s~~~~~~i~~ik~~~--~~v~vIa-GNV~T~e~a~~L~~~GaD~Vk 218 (388)
T d1eepa_ 152 TIERVEELVKAHVDILVIDSA----------HGHSTRIIELIKKIKTKY--PNLDLIA-GNIVTKEAALDLISVGADCLK 218 (388)
T ss_dssp HHHHHHHHHHTTCSEEEECCS----------CCSSHHHHHHHHHHHHHC--TTCEEEE-EEECSHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHhhccceeeeecc----------ccchHHHHHHHHHHHHHC--CCCceee-ccccCHHHHHHHHhcCCCeee
Confidence 578889999999999998631 122222334444443322 2588888 999999999999999999997
Q ss_pred ec
Q 010640 379 MG 380 (505)
Q Consensus 379 ~G 380 (505)
+|
T Consensus 219 VG 220 (388)
T d1eepa_ 219 VG 220 (388)
T ss_dssp EC
T ss_pred ec
Confidence 77
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=93.89 E-value=0.34 Score=43.71 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=71.0
Q ss_pred HHHHHHcCccEEEEeCCCCC--chhHHHHHHHHHHhC--CCceEEEccc---------CCH----HHHHHHHHcCCCEEE
Q 010640 253 LEHLVKAGVNVVVLDSSQGN--SSFQIEMIKYAKKTY--PELDVIGGNV---------VTM----YQAQNLIEAGVDGLR 315 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~~g~--~~~~~~~i~~l~~~~--~~~~Vi~g~V---------~t~----e~a~~l~~aGad~I~ 315 (505)
++.+++.|++++.+....|. ....++.+.++.+.+ -++|+++-.+ .++ ..++.+.+.|+|.++
T Consensus 96 ve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK 175 (251)
T d1ojxa_ 96 VEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMK 175 (251)
T ss_dssp HHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHhchhceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEE
Confidence 55677899999987665442 234455555554432 1778766221 133 346778899999998
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC--CHHHH----HHHHHhCCCEEEecccccC
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS--NSGHI----VKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~--~~~di----~kal~lGA~~V~~G~~f~~ 385 (505)
+..- ........+... ...+||+..||-. +..++ ..|+..||.++.+|+....
T Consensus 176 ~~~p---------------~~~~~~~~~v~~--a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q 234 (251)
T d1ojxa_ 176 IKYT---------------GDPKTFSWAVKV--AGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQ 234 (251)
T ss_dssp ECCC---------------SSHHHHHHHHHH--TTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHT
T ss_pred ecCC---------------CcHHHHHHHHHh--cCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhC
Confidence 8521 012222222222 2357888887754 45555 4567889999999998654
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.83 E-value=0.56 Score=42.95 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=89.9
Q ss_pred cceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHh---CC-------CceEEEc---ccC---C
Q 010640 236 KWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKT---YP-------ELDVIGG---NVV---T 299 (505)
Q Consensus 236 ~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~---~~-------~~~Vi~g---~V~---t 299 (505)
+..+.+-+|+.-...+.++.|+++|++++=++.+||........++.+|+. +. ++.+... ... +
T Consensus 32 kTKIIaTiGPas~~~e~l~~Li~aGvnv~RiN~SHg~~e~h~~~i~~iR~~~~~~~~~~il~~~~~I~~d~~~~~l~~~d 111 (282)
T d2g50a2 32 NTGIICTIGPASRSVETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKD 111 (282)
T ss_dssp CSEEEEECSTTTCSHHHHHHHHHHTCCEEEEETTSSCHHHHHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCCSSCHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCceeccccccccccccccccchH
Confidence 445666777777788999999999999999999999766555666666554 31 1222221 112 3
Q ss_pred HHHHHHHHHcCCCEEEEcc-C---------------Ccc-eeeccc---------------cc---------ccCcC--h
Q 010640 300 MYQAQNLIEAGVDGLRVGM-G---------------SGS-ICTTQE---------------VC---------AVGRG--Q 336 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~-g---------------~g~-~~~~~~---------------~~---------g~g~p--~ 336 (505)
.++...+.+.|+|++.++. . +.. .-.... .+ +.-+| .
T Consensus 112 i~di~~a~~~~vD~ialSFVrs~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIMIaRGDLg~ei~~e~ 191 (282)
T d2g50a2 112 IQDLKFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEK 191 (282)
T ss_dssp HHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGG
T ss_pred HHHHHHhhhccccceeecccCCHHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccccceeeeeccccccccCHHH
Confidence 4566778889999999873 1 111 000000 00 00011 1
Q ss_pred H-HHHHHHHHHHhhcCCcEEecCCCC---------C---HHHHHHHHHhCCCEEEecc
Q 010640 337 A-TAVYKVSSIAAQSGVPVIADGGIS---------N---SGHIVKALVLGASTVMMGS 381 (505)
Q Consensus 337 ~-~~l~~v~~~~~~~~ipvIa~GGI~---------~---~~di~kal~lGA~~V~~G~ 381 (505)
+ ..-..+.+.|+..+.|+|.+.-+. | -.|++.|+..|||++|+..
T Consensus 192 vp~~Qk~Ii~~~~~~~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imLs~ 249 (282)
T d2g50a2 192 VFLAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSG 249 (282)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESH
T ss_pred hHHHHHHHHHHHHhcCCcEEEecccccccccCCCCCHHHHHHHHHHHHhCCCEEEECc
Confidence 1 112234455666789999765333 3 3578889999999999984
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.71 E-value=0.62 Score=41.14 Aligned_cols=118 Identities=9% Similarity=-0.001 Sum_probs=66.3
Q ss_pred HHHHHHcCccEEEEeCC-----CCCchhHHHHHHHHHHhCCCc--eEEE-cccCCHH----HHHHHHHcCCCEEEEccCC
Q 010640 253 LEHLVKAGVNVVVLDSS-----QGNSSFQIEMIKYAKKTYPEL--DVIG-GNVVTMY----QAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 253 ~~~lieaGad~I~i~~~-----~g~~~~~~~~i~~l~~~~~~~--~Vi~-g~V~t~e----~a~~l~~aGad~I~v~~g~ 320 (505)
.+. +..|+|-|-+... .|.-..+.+.++.+++...+. .||. -...+.+ .++.+.++|+|+|+-|.|-
T Consensus 73 ~~a-~~~GAdEID~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf 151 (226)
T d1vcva1 73 VSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGF 151 (226)
T ss_dssp HHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSC
T ss_pred HHH-HHcCCCeeEEEecHHHHhCCCHHHHHHHHHHHHhccCCCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccc
Confidence 443 4559988866443 244445566677777765433 3333 1122333 3455667999999987542
Q ss_pred cceeec-ccccccCcChHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHh
Q 010640 321 GSICTT-QEVCAVGRGQATAVYKVSSIAAQ--SGVPVIADGGISNSGHIVKALVL 372 (505)
Q Consensus 321 g~~~~~-~~~~g~g~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~~~di~kal~l 372 (505)
+....+ +.....| .++..+..+++..+. .++.|=++|||++..+..+.+.+
T Consensus 152 ~~~g~~~~~~~~~~-at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a 205 (226)
T d1vcva1 152 AEEAYAARQGNPVH-STPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA 205 (226)
T ss_dssp CCHHHHHHTTCCSS-CCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred cCCcccccccCccc-CcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHh
Confidence 211100 0000001 234444444444433 25889999999999999988877
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=93.51 E-value=0.37 Score=45.96 Aligned_cols=126 Identities=20% Similarity=0.143 Sum_probs=71.5
Q ss_pred EEEeecCCccHHHHHHHHHHcC-ccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 239 VGAAIGTRESDKERLEHLVKAG-VNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lieaG-ad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+++++.+. -..+.+..+.+.| .-++ |-. ...+.....+...+............-...+.+..+.++|+|++++.
T Consensus 54 IsAnMDTV-t~~~mA~~la~~Gglgvi--hR~-~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~ID 129 (362)
T d1pvna1 54 VSAIMQSV-SGEKMAIALAREGGISFI--FGS-QSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCID 129 (362)
T ss_dssp EECSCTTT-CSHHHHHHHHHTTCEEEE--CCS-SCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEEC
T ss_pred EecCCCCc-CCHHHHHHHHHCCCEEEE--eec-CCHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCceEEeec
Confidence 44454333 2456666777765 3333 221 11233333443333332122222223345667888999999999886
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEec
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMG 380 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G 380 (505)
..-| +..-....+..+++... ..+|||+ |.|.|++.+...+.+|||+|-+|
T Consensus 130 vAhG----------~~~~v~~~i~~ir~~~~-~~~~IiA-GNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 130 SSDG----------FSEWQKITIGWIREKYG-DKVKVGA-GNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp CSCC----------CBHHHHHHHHHHHHHHG-GGSCEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred hhcc----------chhHHHHHHHHHHHhhc-cceeeec-ccccCHHHHHHHHHhCCcEEEec
Confidence 3211 11122334444433221 2477776 99999999999999999999888
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=93.33 E-value=0.24 Score=41.91 Aligned_cols=69 Identities=22% Similarity=0.257 Sum_probs=54.4
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCC-CchhHHHHHHHHHHh-CCCceEEEcccCCHHHHHHHHHcCCCEE
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQG-NSSFQIEMIKYAKKT-YPELDVIGGNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g-~~~~~~~~i~~l~~~-~~~~~Vi~g~V~t~e~a~~l~~aGad~I 314 (505)
.....+.++.+.+.++|++.+.+..+ +...+.+.++.+++. .++++|++|++...++...+.++|+|.+
T Consensus 74 ~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~i 144 (168)
T d7reqa2 74 FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEI 144 (168)
T ss_dssp TBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHHTEEEE
T ss_pred cCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEE
Confidence 34467889999999999999976544 345666777777776 3579999998877788888999999986
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.29 E-value=0.088 Score=46.65 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCccEEEEeCCCC------CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 250 KERLEHLVKAGVNVVVLDSSQG------NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g------~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.++.+.++|+|++.++.... ...... .+...+... ++|+++ |++.|++++.++.++|||++.+|
T Consensus 140 ~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ipvia~GGI~t~~d~~~al~~GAd~V~vG 212 (230)
T d1yxya1 140 FDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDV-ALIEALCKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVG 212 (230)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCH-HHHHHHHHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEeecccccccccccchHHH-HHHHHHhcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 4667778899999998754221 111222 233344443 788877 78899999999999999999886
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=93.23 E-value=0.14 Score=47.11 Aligned_cols=90 Identities=18% Similarity=0.099 Sum_probs=59.2
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccC-cChHHHHHHHHHHHhhcCCcEEecC--CCCCHHH
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVG-RGQATAVYKVSSIAAQSGVPVIADG--GISNSGH 365 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~~~d 365 (505)
+-++++.++-+.-.|+.+.++|.+++.++..+ ........+.+ ++.-+.+..+++.++..++||++|+ |-.++.+
T Consensus 15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~--~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~ 92 (275)
T d1s2wa_ 15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLS--VSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNN 92 (275)
T ss_dssp SSCEEEEEECSHHHHHHHHHHTCSCEEECCHH--HHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHH
T ss_pred CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHH--HHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccchH
Confidence 45666668999999999999999999886322 11111222222 3434455556677777899999995 6667665
Q ss_pred HH----HHHHhCCCEEEec
Q 010640 366 IV----KALVLGASTVMMG 380 (505)
Q Consensus 366 i~----kal~lGA~~V~~G 380 (505)
+. ....+||.++.+=
T Consensus 93 v~~tv~~~~~aGaagi~iE 111 (275)
T d1s2wa_ 93 ARRLVRKLEDRGVAGACLE 111 (275)
T ss_dssp HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhccceeEee
Confidence 54 5557899999765
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=92.89 E-value=0.29 Score=44.57 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHcCccEEEEeC---CCCC----chhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 248 SDKERLEHLVKAGVNVVVLDS---SQGN----SSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~---~~g~----~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
...++++.+.+..-.++-+-+ ..|. .....+.++++|+.. ++|+++| ++.+++++..+.+.|+|+++||
T Consensus 158 t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG 234 (267)
T d1qopa_ 158 ADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (267)
T ss_dssp CCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred ccHHHHHHHHhhCchhhhhhcccccCCcccccchhHHHHHHHHhhhc-cCCceeecccCCHHHHHHHHhcCCCEEEEC
Confidence 355777777776544442222 2221 244678899998886 8999887 8899999999999999999996
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=92.87 E-value=0.19 Score=43.65 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=58.4
Q ss_pred HHHHHHHhC-CCceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec--c--cccccCcChHHHHHHHHHHHhh-cCC
Q 010640 279 MIKYAKKTY-PELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT--Q--EVCAVGRGQATAVYKVSSIAAQ-SGV 352 (505)
Q Consensus 279 ~i~~l~~~~-~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~--~--~~~g~g~p~~~~l~~v~~~~~~-~~i 352 (505)
..+.+|+.+ ++-|+++.++.+.-.|+.+.++|.|++.++..+-....+ . ...+.+......+....+.... .++
T Consensus 8 ~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~~g~l~~~d~~~~~~~~a~~i~~~v~~i 87 (197)
T d2p10a1 8 LVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHT 87 (197)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSS
T ss_pred HHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCcccccccChhHHHHHHHHHHHHHHHhcccC
Confidence 334444433 256888889999999999999999999886322100000 0 0111111112233333444333 369
Q ss_pred cEEecC----CCCCHHHHHH-HHHhCCCEEEe
Q 010640 353 PVIADG----GISNSGHIVK-ALVLGASTVMM 379 (505)
Q Consensus 353 pvIa~G----GI~~~~di~k-al~lGA~~V~~ 379 (505)
|||+|. +..+-...++ ...+|+.+|++
T Consensus 88 PviaD~dG~g~~~nv~rtv~~~~~aG~agI~~ 119 (197)
T d2p10a1 88 PVLAGVNGTDPFMVMSTFLRELKEIGFAGVQN 119 (197)
T ss_dssp CEEEEECTTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred ceEEecCCCCcchhHHHHHHHHHHcCCeEEec
Confidence 999983 4555555444 45799999974
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.83 E-value=0.26 Score=45.91 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=57.2
Q ss_pred eEEEeecCC-ccHHHHHHHHHHcCccEEEEeCCC-------------------------CCc-----hhHHHHHHHHHHh
Q 010640 238 MVGAAIGTR-ESDKERLEHLVKAGVNVVVLDSSQ-------------------------GNS-----SFQIEMIKYAKKT 286 (505)
Q Consensus 238 ~v~a~i~~~-~~~~e~~~~lieaGad~I~i~~~~-------------------------g~~-----~~~~~~i~~l~~~ 286 (505)
++...+... .+..+.++.+.+.|++.+.+..+. |.+ ...+++++.+++.
T Consensus 173 pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~ 252 (312)
T d1gtea2 173 PFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARA 252 (312)
T ss_dssp CEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHH
T ss_pred ceeecccccchhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHH
Confidence 344444332 345677788889999998763210 000 1236788888888
Q ss_pred CCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 287 YPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 287 ~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+++||++ |+|.+.+++.+.+.+|||++.++
T Consensus 253 ~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ 284 (312)
T d1gtea2 253 LPGFPILATGGIDSAESGLQFLHSGASVLQVC 284 (312)
T ss_dssp STTCCEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred cCCCcEEEEcCCCCHHHHHHHHHcCCCeeEEC
Confidence 87788866 88999999999999999999875
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=92.63 E-value=0.21 Score=44.26 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHCCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCccHHHHHHHHHHcCccE
Q 010640 184 DLGQIDEVLEKNDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRESDKERLEHLVKAGVNV 263 (505)
Q Consensus 184 ~l~~a~~~l~~~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~~~~e~~~~lieaGad~ 263 (505)
...+|.+.|.+.+..-+|=+. ++.-.++.|.+.|+.+
T Consensus 113 etl~Aae~Lv~eGF~VlpY~~-------------------------------------------~D~v~ak~Le~~Gc~a 149 (251)
T d1xm3a_ 113 ETLKASEQLLEEGFIVLPYTS-------------------------------------------DDVVLARKLEELGVHA 149 (251)
T ss_dssp HHHHHHHHHHHTTCCEEEEEC-------------------------------------------SCHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhCCcEEEEecC-------------------------------------------CCHHHHHHHHHcCChh
Confidence 356888999998888777542 1346788899999988
Q ss_pred EEEeCC---CCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 264 VVLDSS---QGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 264 I~i~~~---~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+---.+ .|........++.+++.. ++|||+ .+++++.+|..+.+.|+|++-+.
T Consensus 150 vMPlgsPIGSg~Gl~n~~~l~~i~~~~-~vPvIvDAGIG~pSdAa~AMElG~daVLvN 206 (251)
T d1xm3a_ 150 IMPGASPIGSGQGILNPLNLSFIIEQA-KVPVIVDAGIGSPKDAAYAMELGADGVLLN 206 (251)
T ss_dssp BEECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHhhhhhhcCCCcCChHHHHHHHhcC-CccEEEecCCCCHHHHHHHHHccCCEEEec
Confidence 755332 122223456778888885 899988 78999999999999999999663
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=92.49 E-value=0.17 Score=45.42 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEE
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVM 378 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~ 378 (505)
.+.|+.+.+.|+|.+.+. ..+ ..+ +.+....+.. .+....+|+..+|||++..++.+.+.+||+-|.
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~--------~~~-~~~~~~~i~~---i~~~~~~pi~vGGGIrs~~~~~~ll~~Ga~kVv 101 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDA--------AFG-TGDNRALIAE---VAQAMDIKVELSGGIRDDDTLAAALATGCTRVN 101 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHH--------HHT-SCCCHHHHHH---HHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCCEEEEEeecc--------ccc-ccchHHHHHH---HHhhcCcceEeecccccchhhhhhhccccccch
Confidence 356677788999988764 211 001 1123333433 344567999999999999999999999999999
Q ss_pred eccccc
Q 010640 379 MGSFLA 384 (505)
Q Consensus 379 ~G~~f~ 384 (505)
+|+...
T Consensus 102 i~s~~~ 107 (239)
T d1vzwa1 102 LGTAAL 107 (239)
T ss_dssp ECHHHH
T ss_pred hhHHhh
Confidence 998754
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.44 E-value=0.079 Score=47.45 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEeccccc
Q 010640 336 QATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLA 384 (505)
Q Consensus 336 ~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~ 384 (505)
....+..+.+.. .++|++..+||++++++.++.. +||+|.+|++|.
T Consensus 174 ~~~~~~~~~k~~--~~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaiv 219 (231)
T d2f6ua1 174 NPELVAEVKKVL--DKARLFYGGGIDSREKAREMLR-YADTIIVGNVIY 219 (231)
T ss_dssp CHHHHHHHHHHC--SSSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHH
T ss_pred hhhHHHHHHHhc--CCCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHh
Confidence 334444444332 3599999999999999987665 899999999984
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=90.99 E-value=0.56 Score=43.71 Aligned_cols=223 Identities=15% Similarity=0.147 Sum_probs=119.2
Q ss_pred CCcccceeecCCC-CCCCCCCeeeeeeecCcccccceEEEccchhh-------hHHHHHHHHHHcCCeeEEcC--CCCHH
Q 010640 23 SYTYDDVIFLPHY-IDFPIDAVSLSTRLTRNIDLSLPCVASPMDTV-------TEDYMAAAMAALGGIGIVHS--NCTAA 92 (505)
Q Consensus 23 ~~~~~d~~l~p~~-~~~~~~~~~~~~~lt~~~~l~~Pli~a~m~~v-------t~~~ma~al~~~Gg~g~i~~--~~~~~ 92 (505)
+..|||+.|+|.+ +.+..++++++|+|. ++++.+|++.|+|+.. .+..++.+..+.|....+.. ....+
T Consensus 2 ~tgfddi~lvP~~l~~~d~~~vdlst~i~-G~~l~~Pi~is~Ms~g~~~~~~~~~~alA~aA~~~g~~~~~~~~~~~~~~ 80 (329)
T d1p0ka_ 2 ETGLDDITFVHVSLPDLALEQVDISTKIG-ELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKD 80 (329)
T ss_dssp CCSGGGEEECCCSCCCCCGGGCBCCEEET-TEEESCSEEEECCCCSCHHHHHHHHHHHHHHHHHHTCCEECCCCTTTTTC
T ss_pred CCCcceEEEECCCCCCCChhhCCCCEEEC-CEEcCCceEECCHHHhhhhccHHHHHHHHHHHHHcCCCeecccccccchh
Confidence 4569999999987 567778999999998 7999999999999432 12345666555554433321 11222
Q ss_pred HHHH-HHHhhhccCCccccCCCeeEeCCCCCHHHHHHHhcC-Ce--EEEEeCCCCCCeEEEEEecccccccccccccccc
Q 010640 93 DQAR-LVVSAKSRRVPIFSSSLDVFKAPDGCINDANDFDGS-NY--VFVTESGTRRSRILGYVTKSDWENLSDNKVKIFD 168 (505)
Q Consensus 93 ~~~~-~v~~v~~~~~~~~~~p~~~~v~~~~tv~~a~~~~~~-~~--~pVvd~~~~~g~lvGivt~~Dl~~~~~~~~~v~~ 168 (505)
+... ..+.++... . ..+.......+....+..+...+ +. +.+.-+ . ...
T Consensus 81 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~---~---------------------~~~ 133 (329)
T d1p0ka_ 81 PSERLSYEIVRKEN-P--NGLIFANLGSEATAAQAKEAVEMIGANALQIHLN---V---------------------IQE 133 (329)
T ss_dssp HHHHHHHHHHHHHC-S--SSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEEC---T---------------------TTT
T ss_pred HHHHhhhhhHhhhC-C--cceEEEeeccchhHHHHHHHHHHcCCCEEEeccc---c---------------------cch
Confidence 2222 222221111 0 01111334455666666666555 44 222211 0 000
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHH-CCCCeeEEeeCCeeeeEEeechhhhhhcCCCCCCCccCCCCcceEEEeecCCc
Q 010640 169 YMRDCSSNVSVPANYDLGQIDEVLEK-NDVDFVVLEKDGERLDVVTREDVERLKGYPNLGKGTVGPDGKWMVGAAIGTRE 247 (505)
Q Consensus 169 im~~~~~~~~v~~~~~l~~a~~~l~~-~~i~~lpVvd~g~l~GiIt~~dil~~~~~~~~~~~~~d~~~~l~v~a~i~~~~ 247 (505)
.... ..........+.++.+.+ .+. |+ .+ -.++..
T Consensus 134 ~~~~----~~~~~~~~~~~~i~~i~~~~~~---~v-----------------------------------iv-k~v~~~- 169 (329)
T d1p0ka_ 134 IVMP----EGDRSFSGALKRIEQICSRVSV---PV-----------------------------------IV-KEVGFG- 169 (329)
T ss_dssp C------------CTTHHHHHHHHHHHCSS---CE-----------------------------------EE-EEESSC-
T ss_pred hhhc----cccccccchHHHHHHHHHHcCC---Cc-----------------------------------EE-EecCCc-
Confidence 0000 000111122233333332 111 11 11 111111
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc--------------------hhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS--------------------SFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNL 306 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~--------------------~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l 306 (505)
...+.+..+.++|+|.+.+....|.. ......+..++...++++|++ |++.+..++.++
T Consensus 170 ~~~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~v~viadGGIr~g~Dv~KA 249 (329)
T d1p0ka_ 170 MSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKA 249 (329)
T ss_dssp CCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred chHHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhcCCceEEEcCCcccHHHHHHH
Confidence 23466677889999999997644321 112344445555556789887 899999999999
Q ss_pred HHcCCCEEEEc
Q 010640 307 IEAGVDGLRVG 317 (505)
Q Consensus 307 ~~aGad~I~v~ 317 (505)
+.+|||++.++
T Consensus 250 lalGAdaV~iG 260 (329)
T d1p0ka_ 250 IALGASCTGMA 260 (329)
T ss_dssp HHTTCSEEEEC
T ss_pred HHcCCCchhcc
Confidence 99999999875
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=90.91 E-value=0.13 Score=48.39 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHH-----------HH
Q 010640 300 MYQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGH-----------IV 367 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~d-----------i~ 367 (505)
.+.|+...+.|||-+.+- ..+. ..+ .......+..+.+.+....+|+-..|||++-.| +.
T Consensus 51 ~~~a~~~~~~gaDeL~ivDidas-------~~~-~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~ 122 (323)
T d1jvna1 51 VQLAQKYYQQGADEVTFLNITSF-------RDC-PLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVAS 122 (323)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC----------CC-CGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEECcCC-------CCC-cCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHH
Confidence 456788889999988652 1110 000 001111223345556677899999999999766 47
Q ss_pred HHHHhCCCEEEeccccc
Q 010640 368 KALVLGASTVMMGSFLA 384 (505)
Q Consensus 368 kal~lGA~~V~~G~~f~ 384 (505)
+.+.+|||-|.+||...
T Consensus 123 ~ll~~GadKVvI~T~ai 139 (323)
T d1jvna1 123 LYFRSGADKVSIGTDAV 139 (323)
T ss_dssp HHHHHTCSEEEECHHHH
T ss_pred HHHHcCCCeEEechHHh
Confidence 88999999999999764
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=90.89 E-value=2 Score=39.43 Aligned_cols=70 Identities=16% Similarity=0.049 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc--hhHHHHHHHHHHhC-CCceEEE-cccCCHHHHHHHHHcCCCEEEEcc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS--SFQIEMIKYAKKTY-PELDVIG-GNVVTMYQAQNLIEAGVDGLRVGM 318 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~--~~~~~~i~~l~~~~-~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~~ 318 (505)
....++.+..+|.|+++||..||.. ......+..++..- ..++.++ =.-.+....+++.++|+++|.+..
T Consensus 51 s~~~~e~~a~~g~D~v~iD~EHg~~~~~~~~~~i~a~~~~~~~~~~~iVRvp~~~~~~I~~~LD~Ga~GIivP~ 124 (299)
T d1izca_ 51 STFVTKVLAATKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPH 124 (299)
T ss_dssp CHHHHHHHHHTCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETT
T ss_pred CHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEeCCCCChHHHHHHHHhCcCeeeccc
Confidence 3467788889999999999988743 33444455554431 1233344 233577888889999999998763
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=90.75 E-value=0.42 Score=44.00 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCC----------------------chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHH
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGN----------------------SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQN 305 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~----------------------~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~ 305 (505)
..+.++.+.++|++.+.+....|. ....++.+..+++..+++||++ |++.+..++.+
T Consensus 172 ~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~K 251 (310)
T d1vcfa1 172 SREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAK 251 (310)
T ss_dssp CHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHH
T ss_pred cHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHHH
Confidence 356677788899999987543221 1123455666666666889877 89999999999
Q ss_pred HHHcCCCEEEEc
Q 010640 306 LIEAGVDGLRVG 317 (505)
Q Consensus 306 l~~aGad~I~v~ 317 (505)
++.+|||++.++
T Consensus 252 ALalGAdaV~iG 263 (310)
T d1vcfa1 252 ALALGADLLAVA 263 (310)
T ss_dssp HHHHTCSEEEEC
T ss_pred HHHhCCCEeeEh
Confidence 999999999775
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=90.39 E-value=0.81 Score=41.18 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCccEEEEeCCCC-----CchhHHHH---HHHHHHhCCCc--eEEEc--ccCCHHH---HHH-HHHcCCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQG-----NSSFQIEM---IKYAKKTYPEL--DVIGG--NVVTMYQ---AQN-LIEAGVD 312 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g-----~~~~~~~~---i~~l~~~~~~~--~Vi~g--~V~t~e~---a~~-l~~aGad 312 (505)
....++.+++.|++-|-+....+ ....+.+. +..+++...+. .||.= -..+.+. +.. ..++|+|
T Consensus 87 K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~~e~i~~~~~~~~~aGad 166 (256)
T d2a4aa1 87 VLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTEDLIIKTTLAVLNGNAD 166 (256)
T ss_dssp HHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHcCCCeEEEeccHHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCcHHHHHHHHHHHHhcccH
Confidence 44566778889999886655432 11122222 33333333232 44441 1234343 323 3568999
Q ss_pred EEEEccCCcceeecccccccCcChHHHHHHHHHHHh---------hcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 313 GLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAA---------QSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 313 ~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~---------~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
+|+-+.|-+.. ..++..+....+..+ ..++.|=++|||++..++.+.+.+||+.+
T Consensus 167 FVKTSTG~~~~----------gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i~~g~~~l 230 (256)
T d2a4aa1 167 FIKTSTGKVQI----------NATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYILLARRFL 230 (256)
T ss_dssp EEECCCSCSSC----------CCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCCC----------CCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHHHHHHHhc
Confidence 99877442111 122333332222222 23588999999999999999999999864
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=90.24 E-value=1 Score=41.33 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=64.5
Q ss_pred HHHHHcCccEEEEeCCC---CCchhHHHHHHHHHHhC--CCceEEEccc------C---C-----HHHHHHHHHcCCCEE
Q 010640 254 EHLVKAGVNVVVLDSSQ---GNSSFQIEMIKYAKKTY--PELDVIGGNV------V---T-----MYQAQNLIEAGVDGL 314 (505)
Q Consensus 254 ~~lieaGad~I~i~~~~---g~~~~~~~~i~~l~~~~--~~~~Vi~g~V------~---t-----~e~a~~l~~aGad~I 314 (505)
+.+.+.|++++-+..-. .......+.++++.+.+ .++|+++=.+ . + .+.++.+.+.|+|.+
T Consensus 113 ~~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~ 192 (291)
T d1to3a_ 113 QAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLY 192 (291)
T ss_dssp HHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEE
T ss_pred HHHHhccCceEEEEEeeCCcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEE
Confidence 44567788887553322 12233344555554432 2677655211 1 1 234567778999999
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCc-EEecCCCCCHHHHHH----HHHhCCCEEEecccc
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVP-VIADGGISNSGHIVK----ALVLGASTVMMGSFL 383 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ip-vIa~GGI~~~~di~k----al~lGA~~V~~G~~f 383 (505)
++-.- |. ..+ ..-..+....+.....++| |+.+||. +..++.+ |+..||.++.+|+.+
T Consensus 193 K~~~p-~~------~~~---~~~~~~~~~~~~~~~~~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~i 255 (291)
T d1to3a_ 193 KVEMP-LY------GKG---ARSDLLTASQRLNGHINMPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAV 255 (291)
T ss_dssp EECCG-GG------GCS---CHHHHHHHHHHHHHTCCSCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHH
T ss_pred EEecC-CC------chh---hhHHHHHHHHHHhhcCCCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhh
Confidence 87521 00 000 1111222233444456788 7777775 5555555 566999999999864
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.65 E-value=0.77 Score=43.85 Aligned_cols=68 Identities=16% Similarity=0.308 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc----------hhHHHHHHHH---HHhCCCceEEE-cccCCHHHHHHHHHcCCCEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS----------SFQIEMIKYA---KKTYPELDVIG-GNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~----------~~~~~~i~~l---~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I 314 (505)
..+.++.|.++|+|++.+....|.. ...+..+..+ ++.+ ++|||+ |++.+..+..+++.+|||++
T Consensus 170 T~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~-~vpIIADGGi~~~gdiakAla~GAd~V 248 (378)
T d1jr1a1 170 TAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRF-GVPVIADGGIQNVGHIAKALALGASTV 248 (378)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred cHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhccc-CCceecccccccCCceeeEEEeeccee
Confidence 3466788999999999997644321 1233343333 3333 789988 89999999999999999999
Q ss_pred EEc
Q 010640 315 RVG 317 (505)
Q Consensus 315 ~v~ 317 (505)
.++
T Consensus 249 MmG 251 (378)
T d1jr1a1 249 MMG 251 (378)
T ss_dssp EES
T ss_pred eec
Confidence 997
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=89.29 E-value=0.89 Score=41.69 Aligned_cols=90 Identities=13% Similarity=0.197 Sum_probs=60.4
Q ss_pred CceEEEcccCCHHHHHHHHHcCCCEEEEccCCcceeec-ccccccC-cChHHHHHHHHHHHhhcCCcEEecC--CCCC-H
Q 010640 289 ELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGSGSICTT-QEVCAVG-RGQATAVYKVSSIAAQSGVPVIADG--GISN-S 363 (505)
Q Consensus 289 ~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~-~~~~g~g-~p~~~~l~~v~~~~~~~~ipvIa~G--GI~~-~ 363 (505)
+-++..-++-+.-.|+.+.++|.+++.++..+ .... ....+.+ ++.-+.+..+++.++..++|||+|+ |-.+ +
T Consensus 15 ~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~--~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~ 92 (289)
T d1muma_ 15 ENPLQIVGTINANHALLAQRAGYQAIYLSGGG--VAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSA 92 (289)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTCSCEEECHHH--HHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSH
T ss_pred CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHH--HHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccc
Confidence 45677778999999999999999999886221 1111 1122223 3444455566777777899999996 4443 3
Q ss_pred H----HHHHHHHhCCCEEEec
Q 010640 364 G----HIVKALVLGASTVMMG 380 (505)
Q Consensus 364 ~----di~kal~lGA~~V~~G 380 (505)
. -+.+...+||.++.+=
T Consensus 93 ~~v~~~v~~~~~aGvagi~iE 113 (289)
T d1muma_ 93 FNVARTVKSMIKAGAAGLHIE 113 (289)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHCCCCEEEec
Confidence 3 3455668999999765
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=88.82 E-value=0.93 Score=40.20 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCccEEEEeCCC---CCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ---GNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~---g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
+.-.++.+.+.|+.++.--.+. |........++.+++. +++||++ .+++++.+|..+.+.|+|++-+.
T Consensus 137 D~v~ak~le~~Gc~~vMplgsPIGsg~Gi~n~~~l~~i~~~-~~vpvivdAGIg~psdaa~AMElG~dgVLvn 208 (243)
T d1wv2a_ 137 DPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEE-AKVPVLVDAGVGTASDAAIAMELGCEAVLMN 208 (243)
T ss_dssp CHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHH-CSSCBEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred CHHHHhHHHHcCceeeeecccccccccccccHHHHHhcccc-CCcceEeecccCCHHHHHHHHHccCCEEEec
Confidence 3466788899999888664432 2222334566667776 4899888 58999999999999999999764
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=88.15 E-value=1.7 Score=39.41 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=60.6
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~ 315 (505)
+...+.++.+++.|++.+.+..+.|-. .+-...++...+.. .++|+++|... +.+.++.+.++|+|++.
T Consensus 24 ~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~il 103 (292)
T d1xkya1 24 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVM 103 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEE
Confidence 346778899999999999997655421 23344444444433 36899886432 34667888999999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEe
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIA 356 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa 356 (505)
+.. +.+ +..+.-..+....+.+...++|++.
T Consensus 104 v~p----P~~------~~~s~~~i~~~~~~v~~~~~~pi~i 134 (292)
T d1xkya1 104 LVA----PYY------NKPSQEGMYQHFKAIAESTPLPVML 134 (292)
T ss_dssp EEC----CCS------SCCCHHHHHHHHHHHHHTCSSCEEE
T ss_pred ECC----CCC------CCCCHHHHHHHHHHHhccCCCcEEE
Confidence 741 000 1112222233344455566788876
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=88.11 E-value=0.49 Score=42.19 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCCEEEEc-cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEe
Q 010640 301 YQAQNLIEAGVDGLRVG-MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMM 379 (505)
Q Consensus 301 e~a~~l~~aGad~I~v~-~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~ 379 (505)
+.|+.+.+.|+|.+.+. ..+ ... +.+....+ .+.......|+-..|||++-.++.+.+..||+-|.+
T Consensus 34 ~~a~~~~~~g~~~l~ivDLda-------~~~--~~~~~~~~---~~~~~~~~~pl~~gGGI~s~~~~~~~~~~Ga~kVvi 101 (241)
T d1qo2a_ 34 ELVEKLIEEGFTLIHVVDLSN-------AIE--NSGENLPV---LEKLSEFAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHHHTTCCCEEEEEHHH-------HHH--CCCTTHHH---HHHGGGGGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEEEeccc-------ccc--cCCcchhh---eehhcccccchhhhhhhhhhhhhhhccccccceEec
Confidence 56777888899988553 210 000 11222222 222334458999999999999999999999999999
Q ss_pred cccccCC
Q 010640 380 GSFLAGS 386 (505)
Q Consensus 380 G~~f~~~ 386 (505)
++.+...
T Consensus 102 ~s~~~~~ 108 (241)
T d1qo2a_ 102 SSKVLED 108 (241)
T ss_dssp CHHHHHC
T ss_pred CcccccC
Confidence 9976543
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=87.97 E-value=0.23 Score=46.32 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCC---CC-chhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHH-cCCCEEEEcc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQ---GN-SSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIE-AGVDGLRVGM 318 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~---g~-~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~-aGad~I~v~~ 318 (505)
....+.+..+.++|++.+.||.-. +. ....++.++.+++ ++||++ |++.+.+++..+.+ .|+|++.+|-
T Consensus 136 ~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~~~a~~~~i~~~~~---~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGR 210 (305)
T d1vhna_ 136 NEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVAR 210 (305)
T ss_dssp CCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESG
T ss_pred chhhHHHHHHHHhCCcEEEechhhhhhccccchhhhHHHhhhh---hhhhhcccccccHHHHHHHHHhcCCCeEehhH
Confidence 346678889999999999999733 11 1223455554443 578877 89999999998765 7999999974
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=87.68 E-value=1.6 Score=45.15 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=56.0
Q ss_pred CcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCc------------hhHHHHHHHHHHhC------CCceEEE-c
Q 010640 235 GKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNS------------SFQIEMIKYAKKTY------PELDVIG-G 295 (505)
Q Consensus 235 ~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~------------~~~~~~i~~l~~~~------~~~~Vi~-g 295 (505)
+..+|++.+.........+..+.++|+|+|.|+...|.+ ..+...+...++.+ .++.+++ |
T Consensus 570 ~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~G 649 (771)
T d1ea0a2 570 PDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDG 649 (771)
T ss_dssp TTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEES
T ss_pred CCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeC
Confidence 345666666544446667777788999999999865421 12333333333322 2467766 7
Q ss_pred ccCCHHHHHHHHHcCCCEEEEc
Q 010640 296 NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 296 ~V~t~e~a~~l~~aGad~I~v~ 317 (505)
.+.|+.++..+..+|||++..+
T Consensus 650 gl~t~~Dv~ka~aLGAD~v~~g 671 (771)
T d1ea0a2 650 GLKTGRDIVIAAMLGAEEFGIG 671 (771)
T ss_dssp SCCSHHHHHHHHHTTCSEEECC
T ss_pred CCCCHHHHHHHHHhCCCchHHh
Confidence 8899999999999999999654
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=87.40 E-value=1 Score=41.35 Aligned_cols=69 Identities=19% Similarity=0.316 Sum_probs=52.1
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC-------------------CCc-----hhHHHHHHHHHHhCCCceEEE-cccCCHHH
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ-------------------GNS-----SFQIEMIKYAKKTYPELDVIG-GNVVTMYQ 302 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~-------------------g~~-----~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~ 302 (505)
+..+.++.+.+.+++.+.+..+. |.+ ...++.++.+++.. ++||+. |+|.+.++
T Consensus 177 ~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~-~ipIig~GGI~s~~D 255 (311)
T d1ep3a_ 177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQD 255 (311)
T ss_dssp CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHH
T ss_pred chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhc-ceeEEEeCCcCCHHH
Confidence 35577788888999998774311 000 12367888888876 788876 89999999
Q ss_pred HHHHHHcCCCEEEEc
Q 010640 303 AQNLIEAGVDGLRVG 317 (505)
Q Consensus 303 a~~l~~aGad~I~v~ 317 (505)
+.+.+.+|||++.++
T Consensus 256 a~~~i~~GAd~V~ig 270 (311)
T d1ep3a_ 256 VLEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHHTCSEEEEC
T ss_pred HHHHHHcCCCEEEec
Confidence 999999999999875
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.94 E-value=2.7 Score=38.14 Aligned_cols=115 Identities=18% Similarity=0.266 Sum_probs=69.3
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCCC--c---hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEE
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQGN--S---SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g~--~---~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~ 315 (505)
+...+.++.+++.|++.+.+..+.|- . .+..+.++...+.. .++|+++|... +.+.++.+.++|+|++.
T Consensus 28 ~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~ 107 (296)
T d1xxxa1 28 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLL 107 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCCeEE
Confidence 34677889999999999988655442 1 22333344433333 36899886443 45667888899999997
Q ss_pred EccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEec-----CCCCCHHHHHHHHH
Q 010640 316 VGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIAD-----GGISNSGHIVKALV 371 (505)
Q Consensus 316 v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~-----GGI~~~~di~kal~ 371 (505)
+..- .+ +..+.-.......+.++..++||+.= +|..-..++.+.|+
T Consensus 108 i~~P----~~------~~~~~~~l~~~~~~v~~~~~~pi~lYn~p~~~g~~~~~~~~~~L~ 158 (296)
T d1xxxa1 108 VVTP----YY------SKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA 158 (296)
T ss_dssp EECC----CS------SCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred EEec----cC------CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCHHHHHHhc
Confidence 7421 10 01122223333445555667888763 46666666666665
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=86.64 E-value=1.2 Score=40.32 Aligned_cols=66 Identities=24% Similarity=0.257 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCccEEEEeC---CCC----CchhHHHHHHHHHHhCCCceEEEc-ccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDS---SQG----NSSFQIEMIKYAKKTYPELDVIGG-NVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~---~~g----~~~~~~~~i~~l~~~~~~~~Vi~g-~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..++++.+.+..-.++-+.+ ..| ......+.++.+|+.. ++|+.+| ++.++++++.+ .++|+++||
T Consensus 156 ~~eRi~~i~~~s~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGIs~~e~v~~~--~~ADGvIVG 229 (271)
T d1ujpa_ 156 TDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA--AVADGVVVG 229 (271)
T ss_dssp CHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH--TTSSEEEEC
T ss_pred chHHHHHHHHhCcchhhhhcccCccCccccchHHHHHHHHhhhccc-cCCeEEeCCCCCHHHHHHh--CCCCEEEEc
Confidence 55777777776544443222 222 2245678888888775 8999998 78899999875 599999996
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=85.75 E-value=2.3 Score=40.76 Aligned_cols=84 Identities=18% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCcceEEEeecCC---ccHHHHHHHHHHcCccEEEEeCCC-C-------------Cc-----hhHHHHHHHHHHhC-CCc
Q 010640 234 DGKWMVGAAIGTR---ESDKERLEHLVKAGVNVVVLDSSQ-G-------------NS-----SFQIEMIKYAKKTY-PEL 290 (505)
Q Consensus 234 ~~~l~v~a~i~~~---~~~~e~~~~lieaGad~I~i~~~~-g-------------~~-----~~~~~~i~~l~~~~-~~~ 290 (505)
..+.++.+.+.+. ++..+.++.+.+.|+|.+.+..+. + .+ ......+.++++.+ +++
T Consensus 264 ~~~ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~i 343 (409)
T d1tv5a1 264 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 343 (409)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred ccCCceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCc
Confidence 3455666676542 235677788888999999885422 1 11 12466777787776 457
Q ss_pred eEE-EcccCCHHHHHHHHHcCCCEEEEc
Q 010640 291 DVI-GGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 291 ~Vi-~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
||| +|+|.+.++|.+.+.+||+.|.+.
T Consensus 344 pIIGvGGI~s~~Da~e~i~AGAs~VQv~ 371 (409)
T d1tv5a1 344 PIIASGGIFSGLDALEKIEAGASVCQLY 371 (409)
T ss_dssp CEEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred eEEEECCCCCHHHHHHHHHcCCCHHhhh
Confidence 765 499999999999999999999774
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=85.65 E-value=1.2 Score=41.58 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCC-------CchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcC-CCEEEEc
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQG-------NSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAG-VDGLRVG 317 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g-------~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aG-ad~I~v~ 317 (505)
++..+.+..+.+.|+|++.+..... .+....+..+.+|+.. ++||++ |.+.+++.|.++++.| +|.|.++
T Consensus 228 ~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~g 306 (337)
T d1z41a1 228 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIG 306 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEEC
T ss_pred hhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc-CceEEEeCCcCCHHHHHHHHHCCCcceehhh
Confidence 3466778888899999998854211 1124566777888876 789876 7888999999999998 9988654
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=85.35 E-value=0.54 Score=41.54 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceE-EEcccCCHHHHHHHHHcCCCEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDV-IGGNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~V-i~g~V~t~e~a~~l~~aGad~I 314 (505)
+.....+.++++|+|++-..+..+......+.++.+++..+ ++.| ..|++.|.++|..++++|++.|
T Consensus 133 ei~~a~~~a~~aGadfiKTSTG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~Ri 201 (225)
T d1mzha_ 133 EIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHcccceEeecCCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhhe
Confidence 35556677888999999764433222233466666666653 5677 4589999999999999999977
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=2.3 Score=37.94 Aligned_cols=73 Identities=12% Similarity=0.019 Sum_probs=53.0
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 296 ~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
...++..++.+..+|.|++.+... ||.-....+..+.++++..+++.+.==--.++..+.++|.+||+
T Consensus 23 ~~~~p~~~ei~a~~G~Dfv~iD~E------------Hg~~~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~LD~Ga~ 90 (253)
T d1dxea_ 23 ALSNPISTEVLGLAGFDWLVLDGE------------HAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFY 90 (253)
T ss_dssp CSCSHHHHHHHTTSCCSEEEEESS------------SSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHcCCCCEEEEecc------------cCCCChhHHHHHHHHHhccCCCceecCCCCCHHHHHHHHhcCcc
Confidence 456899999999999999988631 23233445555566677667665552233699999999999999
Q ss_pred EEEec
Q 010640 376 TVMMG 380 (505)
Q Consensus 376 ~V~~G 380 (505)
+|++=
T Consensus 91 GIivP 95 (253)
T d1dxea_ 91 NFLIP 95 (253)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99864
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=85.29 E-value=2.1 Score=44.41 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=56.6
Q ss_pred CCCcceEEEeecCCccHHHHHHHHHHcCccEEEEeCCCCCc------------hhHHHHH----HHHHHhC--CCceEEE
Q 010640 233 PDGKWMVGAAIGTRESDKERLEHLVKAGVNVVVLDSSQGNS------------SFQIEMI----KYAKKTY--PELDVIG 294 (505)
Q Consensus 233 ~~~~l~v~a~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~------------~~~~~~i----~~l~~~~--~~~~Vi~ 294 (505)
.++..+|++.+.........+..+.++++|+|.|+...|.+ ..+...+ +.+...- .++.+++
T Consensus 595 ~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia 674 (809)
T d1ofda2 595 INPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRA 674 (809)
T ss_dssp HCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEE
T ss_pred hCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 34456677776544445566677778999999999865432 1222223 3333321 1466666
Q ss_pred -cccCCHHHHHHHHHcCCCEEEEc
Q 010640 295 -GNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 295 -g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
|.+.|+.++..+..+|||.+..+
T Consensus 675 ~Ggl~t~~Dv~ka~aLGAD~v~~g 698 (809)
T d1ofda2 675 DGGLKTGWDVVMAALMGAEEYGFG 698 (809)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEECS
T ss_pred eCCCCCHHHHHHHHHhCCCchhHh
Confidence 78899999999999999999765
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=85.29 E-value=0.99 Score=36.46 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCc-hhHHHHHHHHHHhC-CCceEEEcccC------CHHHHHHHHHcCCCEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNS-SFQIEMIKYAKKTY-PELDVIGGNVV------TMYQAQNLIEAGVDGL 314 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~-~~~~~~i~~l~~~~-~~~~Vi~g~V~------t~e~a~~l~~aGad~I 314 (505)
..+.++.+.+.++|++.+....+.. ..+.+.++.+++.. .++++++|+.. -.+.+..+.+.|+|.|
T Consensus 43 ~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~i 116 (137)
T d1ccwa_ 43 QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRV 116 (137)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhcCCCEEEEeeccccchHHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEE
Confidence 6678888999999999997655433 44555666676654 47899887653 2557778889999988
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.10 E-value=5.5 Score=33.88 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccC-----------CHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVV-----------TMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~-----------t~e~a~~l~~aGad~I~v~ 317 (505)
....++.+.+.|+|.+.++...|. +.++..++. ...+++.... .....+.+..++..+++.+
T Consensus 67 ~~~~~~~~~~~gad~~Tvh~~~g~-----~~i~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 139 (206)
T d2czda1 67 NRLIARKVFGAGADYVIVHTFVGR-----DSVMAVKEL--GEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAP 139 (206)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTCH-----HHHHHHHTT--SEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECC
T ss_pred chheehhhccccccEEEeeecccH-----HHHHHhhhc--ccceEEEeccCCcccccccHHHHHHHHHHHhccccccccc
Confidence 345677778899999999876653 344445444 2222221111 1112344455677666432
Q ss_pred cCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCC-CHHHHHHHHHhCCCEEEecccccC
Q 010640 318 MGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGIS-NSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 318 ~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~-~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
. .....+..+++.+. .+..++.. ||+ .+.+..+|+.+|||.+.+|+++..
T Consensus 140 ~----------------~~~~~~~~~r~~~~-~~~~i~~p-GI~~~~~~~~~ai~~Gad~iVvGR~I~~ 190 (206)
T d2czda1 140 G----------------TRPERIGYIRDRLK-EGIKILAP-GIGAQGGKAKDAVKAGADYIIVGRAIYN 190 (206)
T ss_dssp C----------------SSTHHHHHHHHHSC-TTCEEEEC-CCCSSTTHHHHHHHHTCSEEEECHHHHT
T ss_pred c----------------cCchhhhhhhhhhc-ccceEECC-CccccCCCHHHHHHhCCCEEEEChhhcc
Confidence 1 01122333333332 23555554 443 455788899999999999999854
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=85.07 E-value=1.7 Score=38.80 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=54.1
Q ss_pred ccCCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCC
Q 010640 296 NVVTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGAS 375 (505)
Q Consensus 296 ~V~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~ 375 (505)
+..-.+.|+...+.||++|.|-... .-+. +.+.-+..+ ....++||+.---|.++.+|..|..+|||
T Consensus 64 ~~dp~~~A~~y~~~GA~aiSVLTe~------~~F~----Gs~~dl~~v---~~~~~iPvLrKDFIid~~QI~ea~~~GAD 130 (254)
T d1vc4a_ 64 EVDPVEAALAYARGGARAVSVLTEP------HRFG----GSLLDLKRV---REAVDLPLLRKDFVVDPFMLEEARAFGAS 130 (254)
T ss_dssp SCCHHHHHHHHHHTTCSEEEEECCC------SSSC----CCHHHHHHH---HHHCCSCEEEESCCCSHHHHHHHHHTTCS
T ss_pred cCCHHHHHHHHHhcCCceEEEEcCc------cccc----ccHHHHHHH---HHHcCCCcccCCccccHHHHHHHHhccch
Confidence 3334567888899999999764210 1121 233444444 34468999999999999999999999999
Q ss_pred EEEeccccc
Q 010640 376 TVMMGSFLA 384 (505)
Q Consensus 376 ~V~~G~~f~ 384 (505)
+|.+-..++
T Consensus 131 aVLLIaall 139 (254)
T d1vc4a_ 131 AALLIVALL 139 (254)
T ss_dssp EEEEEHHHH
T ss_pred HHHHHHHHH
Confidence 997776654
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=84.98 E-value=11 Score=32.65 Aligned_cols=118 Identities=8% Similarity=-0.040 Sum_probs=79.2
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEEc--ccCCHHHHHHHH----HcCCCEEEEcc
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIGG--NVVTMYQAQNLI----EAGVDGLRVGM 318 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~g--~V~t~e~a~~l~----~aGad~I~v~~ 318 (505)
+++..+.++.+++.|...+-+..........++.++.+|+.+ +++.+++- .--+.++|..+. +.+...+.-.
T Consensus 21 ~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai~~~~~l~~~~i~wiEeP- 99 (247)
T d1tzza1 21 LSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYEEV- 99 (247)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEECC-
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhHHHHHhhcchhhhhhhccc-
Confidence 344667788889999999988765444456678888888876 67788772 123666654443 4555544211
Q ss_pred CCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCC-----CEEEec
Q 010640 319 GSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGA-----STVMMG 380 (505)
Q Consensus 319 g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA-----~~V~~G 380 (505)
+.. -.+. ..++.+...++||.++-.+.+..|....+..|| |.+++.
T Consensus 100 ----------~~~---~d~~---~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d 150 (247)
T d1tzza1 100 ----------GDP---LDYA---LQAALAEFYPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 150 (247)
T ss_dssp ----------SCT---TCHH---HHHHHTTTCCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred ----------ccc---ccch---hhhhhhhccccccccchhhhhhHHHHHHHHccCCcCcceeEeec
Confidence 110 0122 334455567899999889999999999999997 577764
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=84.88 E-value=3.1 Score=32.98 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v 316 (505)
..+.++.+.+..+|++.+|..-+.. +-++.++.+|+..|..++++ ....+.+.+..+.++|++.+..
T Consensus 37 ~~~al~~~~~~~~DlvllD~~mP~~-~G~el~~~ir~~~~~~~vivlt~~~~~~~~~~a~~~Ga~~yl~ 104 (138)
T d1a04a2 37 GEQGIELAESLDPDLILLDLNMPGM-NGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLL 104 (138)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSTTS-CHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCC-CHHHHHHHHHhhCCCCCEEEEEEECCHHHHHHHHHcCCCEEEE
Confidence 5566666677789999998865433 34788899998888887755 4556888899999999998743
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=84.37 E-value=9.1 Score=32.91 Aligned_cols=125 Identities=16% Similarity=0.206 Sum_probs=82.5
Q ss_pred eecCCccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhC-CCceEEE-ccc-CCHHHHHHHHH----cCCCEE
Q 010640 242 AIGTRESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTY-PELDVIG-GNV-VTMYQAQNLIE----AGVDGL 314 (505)
Q Consensus 242 ~i~~~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~-~~~~Vi~-g~V-~t~e~a~~l~~----aGad~I 314 (505)
.++++++..+.++.+.+.|...+-+..........++.+..+|+.+ +++.+++ .+- .+.++|..+.+ .+.+..
T Consensus 12 ~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~~le~~~~~i~ 91 (234)
T d1jpma1 12 SVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIE 91 (234)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHHHHHhccCcee
Confidence 4445667788899999999999988765444456678888888877 5677876 222 36666654443 333332
Q ss_pred EEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEecc
Q 010640 315 RVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMGS 381 (505)
Q Consensus 315 ~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G~ 381 (505)
.+- .... .-.+..+ .+.++..++||..+.-+.+..+....+..| +|.+++..
T Consensus 92 ~~E---------eP~~---~~d~~~~---~~l~~~~~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~ 144 (234)
T d1jpma1 92 LVE---------QPVH---KDDLAGL---KKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKL 144 (234)
T ss_dssp EEE---------CCSC---TTCHHHH---HHHHHHCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECH
T ss_pred eec---------CCcc---ccCHHHH---HHhhccccceeecccccccchhhhhhhccCCcCeEEEee
Confidence 221 0110 0123333 334445689999999999999999999988 78888764
|
| >d2basa1 c.1.33.1 (A:2-262) Hypothetical protein YkuI, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: EAL domain-like family: EAL domain domain: Hypothetical protein YkuI, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=84.34 E-value=1.9 Score=38.44 Aligned_cols=126 Identities=16% Similarity=0.230 Sum_probs=78.8
Q ss_pred HHHHHHHHcC--ccEEEEeCCC----CCchhHHHHHHHHHHhCCCceEEEcccCC-HHHHHHHHHcCCCEEEEccCCcce
Q 010640 251 ERLEHLVKAG--VNVVVLDSSQ----GNSSFQIEMIKYAKKTYPELDVIGGNVVT-MYQAQNLIEAGVDGLRVGMGSGSI 323 (505)
Q Consensus 251 e~~~~lieaG--ad~I~i~~~~----g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t-~e~a~~l~~aGad~I~v~~g~g~~ 323 (505)
+.+..+.+.+ +.-+++..+. .+.....+.++.+++. ++.+.+.++++ ......+...++|+|++...-
T Consensus 103 ~~l~~l~~~~l~~~~lvlEi~E~~~~~~~~~~~~~l~~L~~~--G~~lalddfG~~~~sl~~L~~l~~d~IKld~s~--- 177 (261)
T d2basa1 103 ELLKEYEAKGIELHRFVLEITEHNFEGDIEQLYHMLAYYRTY--GIKIAVDNIGKESSNLDRIALLSPDLLKIDLQA--- 177 (261)
T ss_dssp HHHHHHHHTTCCGGGEEEEECCTTCCSCHHHHHHHHHHHHTT--TCEEEEEEETTTBCCHHHHHHHCCSEEEEECTT---
T ss_pred HHHHHHhhhCCCcccceeeeehhhhhhhHHHHHHHHHHHhhc--CceeeecCCccCccchhHHhhhhhhhhhccccc---
Confidence 3444555555 3335554432 2334566777777776 78887766643 234456777899999986211
Q ss_pred eecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccCC
Q 010640 324 CTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAGS 386 (505)
Q Consensus 324 ~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~~ 386 (505)
.+.... .......+..+...++..++++|+ .||-+..+...+..+|++.+| |-.|..+
T Consensus 178 --i~~~~~-~~~~~~~l~~l~~~a~~~~~~vIa-eGVE~~~~~~~l~~lg~d~~Q-G~~~~~P 235 (261)
T d2basa1 178 --LKVSQP-SPSYEHVLYSISLLARKIGAALLY-EDIEANFQLQYAWRNGGRYFQ-GYYLVSP 235 (261)
T ss_dssp --TC-----CCHHHHHHHHHHHHHHHHTCEEEE-ECCCSHHHHHHHHHTTEEEEC-STTTCCC
T ss_pred --cccccc-chhhHHHHHHHHHHHHHcCCEEEE-EeCCcHHHHHHHHHcCCCEEE-CCccccc
Confidence 111110 011222345556667778899988 799999999999999999997 7766543
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=84.26 E-value=11 Score=33.18 Aligned_cols=120 Identities=15% Similarity=0.202 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC--C--CchhHHHHHHHHHHhCCCceEEEc-------cc--CCHHH----HHHHHHcC
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ--G--NSSFQIEMIKYAKKTYPELDVIGG-------NV--VTMYQ----AQNLIEAG 310 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~--g--~~~~~~~~i~~l~~~~~~~~Vi~g-------~V--~t~e~----a~~l~~aG 310 (505)
+..+.+..+.+.|+|++++-... . ....+.+.++.+++.+.++|++.. +. .+.+. -+.+.++|
T Consensus 29 ~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~ 108 (252)
T d1gqna_ 29 SVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSG 108 (252)
T ss_dssp HHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcC
Confidence 34455666667799999995532 2 235667788888888777999871 11 12222 24455678
Q ss_pred -CCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecC----CCCCHHHH----HHHHHhCCCEEEecc
Q 010640 311 -VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADG----GISNSGHI----VKALVLGASTVMMGS 381 (505)
Q Consensus 311 -ad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~G----GI~~~~di----~kal~lGA~~V~~G~ 381 (505)
+|++++-.. .+. ..+..+.+.++..++.+|.|= +--+..++ .++..+|||.|-+..
T Consensus 109 ~~d~iDiEl~--------------~~~-~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDivKia~ 173 (252)
T d1gqna_ 109 LVDMIDLELF--------------TGD-ADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAV 173 (252)
T ss_dssp CCSEEEEEGG--------------GCH-HHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCceEecccc--------------ccH-HHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 899987410 010 112233344455678888873 33333444 345578999987765
Q ss_pred c
Q 010640 382 F 382 (505)
Q Consensus 382 ~ 382 (505)
+
T Consensus 174 ~ 174 (252)
T d1gqna_ 174 M 174 (252)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=84.07 E-value=1.5 Score=38.57 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHcCccEEEEeCCCC---CchhHHHHHHHHHH---hCCCceEEEcccCCHHHHHHHHHcCCCEEEEccCC
Q 010640 247 ESDKERLEHLVKAGVNVVVLDSSQG---NSSFQIEMIKYAKK---TYPELDVIGGNVVTMYQAQNLIEAGVDGLRVGMGS 320 (505)
Q Consensus 247 ~~~~e~~~~lieaGad~I~i~~~~g---~~~~~~~~i~~l~~---~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~~g~ 320 (505)
.+..+.++.+++.|++++.+-.-.. ......+..+.+++ .+ ++++++- .+. ..+.+.|+|+|-++.
T Consensus 30 ~~~~~~v~~al~~Gv~~iqlR~K~~~~~~~~~~~~~a~~l~~lc~~~-~~~liIn--d~~---~lA~~~~adGvHl~~-- 101 (226)
T d2tpsa_ 30 ADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREA-GVPFIVN--DDV---ELALNLKADGIHIGQ-- 101 (226)
T ss_dssp SCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHH-TCCEEEE--SCH---HHHHHHTCSEEEECT--
T ss_pred cCHHHHHHHHHHCCCCEEEEcCCCccchhHHHHHHHHHHHHHHHHHh-CCeEEEc--CCH---HHHhhccCCEEEecc--
Confidence 3467889999999999998843211 11233333344333 33 6777763 233 445567999885531
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEEEecccccC
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTVMMGSFLAG 385 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V~~G~~f~~ 385 (505)
.. .+ ..+++.... -.++ .+.+.+..++.+|...|||.+.+|..|-.
T Consensus 102 ------~d-----~~----~~~~r~~~~---~~ii-g~S~h~~~e~~~a~~~g~DYi~~gpvf~T 147 (226)
T d2tpsa_ 102 ------ED-----AN----AKEVRAAIG---DMIL-GVSAHTMSEVKQAEEDGADYVGLGPIYPT 147 (226)
T ss_dssp ------TS-----SC----HHHHHHHHT---TSEE-EEEECSHHHHHHHHHHTCSEEEECCSSCC
T ss_pred ------cc-----ch----hhhhhhccc---ceee-eeeccchHHHHHHHhCcCCeEEEeccccc
Confidence 11 12 122333322 1233 34578999999999999999999998853
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.96 E-value=3.1 Score=33.02 Aligned_cols=67 Identities=27% Similarity=0.322 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v 316 (505)
..+..+.+.+..+|++.+|..-+... -.+.++.+++..|++||++ ....+.+.+..+.++|++.+..
T Consensus 33 ~~eAl~~l~~~~~dlvilD~~mp~~~-G~e~~~~lr~~~~~~piI~lT~~~~~~~~~~a~~~Ga~dyl~ 100 (137)
T d1ny5a1 33 GKEAYKLLSEKHFNVVLLDLLLPDVN-GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLT 100 (137)
T ss_dssp HHHHHHHHHHSCCSEEEEESBCSSSB-HHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhhccccccchHHHhhhhhh-HHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 45666667777899999987554333 3688888988888898766 4456889999999999987744
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=83.86 E-value=4.6 Score=36.30 Aligned_cols=110 Identities=19% Similarity=0.274 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCC----------------C------------Cc-hhHHHHHHHHHHhCCCceEEEcccCC
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQ----------------G------------NS-SFQIEMIKYAKKTYPELDVIGGNVVT 299 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~----------------g------------~~-~~~~~~i~~l~~~~~~~~Vi~g~V~t 299 (505)
..+.++.+.++|+|++-++.-. . .+ ..+.+..+..++. ++..++ ++.+
T Consensus 36 a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~--~i~~~~-s~fd 112 (280)
T d2zdra2 36 AFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESK--GMIFIS-TPFS 112 (280)
T ss_dssp HHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHT--TCEEEE-EECS
T ss_pred HHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhc--CCcccc-ccch
Confidence 5566677778899999887521 0 00 1122223333333 667666 7888
Q ss_pred HHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH----hCCC
Q 010640 300 MYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV----LGAS 375 (505)
Q Consensus 300 ~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~----lGA~ 375 (505)
.+.+..+...|++++.++.+ .... ...+. .+...+.|||.+=|..+-.++.+++. .|.+
T Consensus 113 ~~s~~~~~~~~~~~~KIaS~--------d~~n-----~~Li~----~i~k~~kpiiiStG~s~~~EI~~av~~~~~~~~~ 175 (280)
T d2zdra2 113 RAAALRLQRMDIPAYKIGSG--------ECNN-----YPLIK----LVASFGKPIILSTGMNSIESIKKSVEIIREAGVP 175 (280)
T ss_dssp HHHHHHHHHHTCSCEEECGG--------GTTC-----HHHHH----HHHTTCSCEEEECTTCCHHHHHHHHHHHHHHTCC
T ss_pred hhcccccccccccceeccch--------hccc-----cHhhh----hhhhccCceeecccccchhHhhhhhhhhhhcccc
Confidence 99999999999999998631 1211 22222 23346899999999999999999997 3655
Q ss_pred EEE
Q 010640 376 TVM 378 (505)
Q Consensus 376 ~V~ 378 (505)
.+.
T Consensus 176 ~~l 178 (280)
T d2zdra2 176 YAL 178 (280)
T ss_dssp EEE
T ss_pred ceE
Confidence 443
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=83.55 E-value=3.4 Score=31.79 Aligned_cols=67 Identities=21% Similarity=0.229 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v 316 (505)
..+.++.+.+..+|++.+|..-... .-++.++.+++..+++|+++ ....+.+....+.++|++.+..
T Consensus 35 ~~~al~~~~~~~~dliilD~~mp~~-~G~e~~~~ir~~~~~~pvi~ls~~~~~~~~~~a~~~Ga~~yl~ 102 (118)
T d1u0sy_ 35 GREAVEKYKELKPDIVTMDITMPEM-NGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIV 102 (118)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCGGG-CHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhccCCEEEEecCCCCC-CHHHHHHHHHHhCCCCcEEEEEccCCHHHHHHHHHcCCCEEEE
Confidence 5566777777889999998765433 34678888888888888755 4556888899999999998743
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=83.54 E-value=6.5 Score=35.05 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=43.3
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCC---CC---c-----hhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEE
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQ---GN---S-----SFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~---g~---~-----~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I 314 (505)
.+....+++.+++.|||+|-|.... |. + ..+...++.+++. ++++=+ .-..++.++.+.++|++.|
T Consensus 25 ~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~--~~~iSI-DT~~~eVa~~al~~Ga~iI 101 (264)
T d1ad1a_ 25 VESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGF--DVKISV-DTFRSEVAEACLKLGVDII 101 (264)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTS--SSEEEE-ECSCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhccc--Ccccch-hhhhHHHHHHHHhcCCcEe
Confidence 3457788999999999999985421 11 1 1222333333322 444422 4457999999999999999
Q ss_pred E
Q 010640 315 R 315 (505)
Q Consensus 315 ~ 315 (505)
.
T Consensus 102 N 102 (264)
T d1ad1a_ 102 N 102 (264)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=83.35 E-value=5.2 Score=36.31 Aligned_cols=104 Identities=13% Similarity=0.203 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHcCccEEEEeCCC---------C--------------------Cc-hhHHHHHHHHHHhCCCceEEEccc
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQ---------G--------------------NS-SFQIEMIKYAKKTYPELDVIGGNV 297 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~---------g--------------------~~-~~~~~~i~~l~~~~~~~~Vi~g~V 297 (505)
...+.++.+.++|+|++-++.-. + .+ ..+.+..+..++. ++..++ ++
T Consensus 32 ~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~~k~~--gi~~~~-s~ 108 (295)
T d1vlia2 32 QAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREK--QVIFLS-TV 108 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHT--TCEEEC-BC
T ss_pred HHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHHhhhc--ccceee-ec
Confidence 35566777778899999887511 0 01 2233333434333 677666 88
Q ss_pred CCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Q 010640 298 VTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALV 371 (505)
Q Consensus 298 ~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~ 371 (505)
.+.+.+..+.+.|++++.++. ..... ...+ +.+...+.|||.+-|..+..++.+++.
T Consensus 109 fd~~s~~~l~~l~~~~iKIaS--------~d~~n-----~~Li----~~i~k~~kpviistG~~~~~ei~~~~~ 165 (295)
T d1vlia2 109 CDEGSADLLQSTSPSAFKIAS--------YEINH-----LPLL----KYVARLNRPMIFSTAGAEISDVHEAWR 165 (295)
T ss_dssp CSHHHHHHHHTTCCSCEEECG--------GGTTC-----HHHH----HHHHTTCSCEEEECTTCCHHHHHHHHH
T ss_pred ccceeeeeecccCcceeEecc--------ccccc-----HHHH----HHHHhcCCchheechhhhhhhHHHHHh
Confidence 899999999999999999862 11211 2222 233446799999988899999988874
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=83.17 E-value=0.78 Score=40.03 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCC-CceE-EEcccCCHHHHHHHHHcCCCEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYP-ELDV-IGGNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~-~~~V-i~g~V~t~e~a~~l~~aGad~I 314 (505)
+.....+.+.++|+|++-..+..+......+.++.+++..+ .+.| ..|++.|.++|..++++|++.|
T Consensus 133 ei~~a~~~a~~aGadfiKTSTG~~~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~ri 201 (211)
T d1ub3a_ 133 EIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRL 201 (211)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHhccceEEecCCCCCCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhHh
Confidence 35556677888999999764433222223455566666543 4566 5589999999999999999977
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=83.01 E-value=10 Score=33.89 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHcCccEEEEeCCCCCc-----hhHHHHHHHHHHhC-CCceEEEcccC-----CHHHHHHHHHcCCCEEEE
Q 010640 248 SDKERLEHLVKAGVNVVVLDSSQGNS-----SFQIEMIKYAKKTY-PELDVIGGNVV-----TMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 248 ~~~e~~~~lieaGad~I~i~~~~g~~-----~~~~~~i~~l~~~~-~~~~Vi~g~V~-----t~e~a~~l~~aGad~I~v 316 (505)
...+.++.+++.|++.+.+..+.|-. .+-...++...+.. .++||++|... +.+.++.+.++|+|++.+
T Consensus 23 ~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad~v~v 102 (295)
T d1o5ka_ 23 SYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLV 102 (295)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCCEEEE
Confidence 46778889999999999886655421 22233333333333 36889886432 355678888999999977
Q ss_pred ccCCcceeecccccccCcChHH-HHHHHHHHHhhcCCcEEe------cCCCCCHHHHHHHHHh
Q 010640 317 GMGSGSICTTQEVCAVGRGQAT-AVYKVSSIAAQSGVPVIA------DGGISNSGHIVKALVL 372 (505)
Q Consensus 317 ~~g~g~~~~~~~~~g~g~p~~~-~l~~v~~~~~~~~ipvIa------~GGI~~~~di~kal~l 372 (505)
.. + .+ ..|+-. .+......++..++|++. .|--.++..+.+.++-
T Consensus 103 ~p-P---~y-------~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~ 154 (295)
T d1o5ka_ 103 VT-P---YY-------NKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD 154 (295)
T ss_dssp EC-C---CS-------SCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred eC-C---CC-------CCCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhh
Confidence 42 0 11 112222 222334445556788776 2555566666666553
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.19 E-value=1.4 Score=36.94 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..+.+..+++.|+|++-+|.- .+....+.++.++...+.+.+-+.+-.+.+........|+|+|.+|
T Consensus 88 s~~q~~~a~~~~~diImLDN~--sp~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ya~~GvD~IS~g 154 (169)
T d1qpoa1 88 SLEQLDAVLPEKPELILLDNF--AVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAETGVDYLAVG 154 (169)
T ss_dssp SHHHHHHHGGGCCSEEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHHHHHTTCSEEECG
T ss_pred cHHHhhhhhhcCCcEEEecCc--ChHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHHHHHcCCCEEECC
Confidence 457778888999999999753 2345667777777776677775533347777888889999999875
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=82.08 E-value=5.5 Score=30.55 Aligned_cols=66 Identities=21% Similarity=0.106 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLR 315 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~ 315 (505)
..+.++.+.+...|++.+|..-... .-++.++++|+..+++|+++ ....+.+.+..+.++|++.+.
T Consensus 34 g~eal~~~~~~~~dlillD~~mP~~-~G~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl 100 (119)
T d1peya_ 34 GLQALDIVTKERPDLVLLDMKIPGM-DGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHF 100 (119)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTC-CHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhCCCCEEEEeccCCCC-CHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCCCCEEE
Confidence 4455666677789999998765433 23678888888888888866 445678889999999999774
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=82.06 E-value=4.2 Score=35.31 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=52.7
Q ss_pred EEEeecCCccHHHHHHHHHH-cCccEEEEeC-CCC-----CchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCC
Q 010640 239 VGAAIGTRESDKERLEHLVK-AGVNVVVLDS-SQG-----NSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGV 311 (505)
Q Consensus 239 v~a~i~~~~~~~e~~~~lie-aGad~I~i~~-~~g-----~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGa 311 (505)
+|.++... ...+.+..+++ ..+|.+.+-+ ..| .....++.++.+|+..++..+.+-+-.+.+.+..+.++||
T Consensus 114 ~Gial~p~-t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~VDGGIn~~~i~~l~~aGa 192 (221)
T d1tqxa_ 114 CGISIKPK-TDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGA 192 (221)
T ss_dssp EEEEECTT-SCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTC
T ss_pred EEEeeccc-cccccchhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEEEcccCHHhHHHHHHcCC
Confidence 44444322 23344444554 4688876643 112 2367889999999998888887744557789999999999
Q ss_pred CEEEEc
Q 010640 312 DGLRVG 317 (505)
Q Consensus 312 d~I~v~ 317 (505)
|.+++|
T Consensus 193 d~iV~G 198 (221)
T d1tqxa_ 193 NIIVAG 198 (221)
T ss_dssp CEEEES
T ss_pred CEEEEC
Confidence 999875
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=81.30 E-value=5.4 Score=30.59 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEEEE
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGLRV 316 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I~v 316 (505)
..+..+.+.+...|++.+|..-+... -++.++++++..+.+|+++ ..-.+.+....+.++|++.+..
T Consensus 33 g~eal~~l~~~~~dliilD~~mP~~~-G~e~~~~i~~~~~~~pvi~lt~~~~~~~~~~a~~~Ga~~yl~ 100 (119)
T d2pl1a1 33 AKEADYYLNEHIPDIAIVDLGLPDED-GLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT 100 (119)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSSC-HHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhcccceeehhccCCCch-hHHHHHHHHhcCcccceEeeeccCCHHHHHHHHHcCCCEEEE
Confidence 45666667777899999987654332 3678888888877888766 4456788889999999998743
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=81.25 E-value=6.3 Score=34.31 Aligned_cols=115 Identities=14% Similarity=0.186 Sum_probs=76.0
Q ss_pred CccHHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEc-c-cCCHHHHHHH---HHcCCCEEEEccCC
Q 010640 246 RESDKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGG-N-VVTMYQAQNL---IEAGVDGLRVGMGS 320 (505)
Q Consensus 246 ~~~~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g-~-V~t~e~a~~l---~~aGad~I~v~~g~ 320 (505)
+++..+.++.+.+.|...+-+..... ..++.++.+|+.+++..+++- + --+.++|..+ .+.+...+.-
T Consensus 17 ~e~~~~~~~~~~~~Gf~~~Kikvg~~---~D~~~v~~ir~~~~~~~l~vDaN~~~~~~~a~~~~~l~~~~~~wiEe---- 89 (244)
T d1wufa1 17 VETLLQLVNQYVDQGYERVKLKIAPN---KDIQFVEAVRKSFPKLSLMADANSAYNREDFLLLKELDQYDLEMIEQ---- 89 (244)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECBTT---BSHHHHHHHHTTCTTSEEEEECTTCCCGGGHHHHHTTGGGTCSEEEC----
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCc---HHHHHHHHHHHhccchhhhhhhhccccchhhhhhhcccccchhhhcC----
Confidence 34567778888889999988865432 347888999999888888872 1 1255555433 3344444321
Q ss_pred cceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhC-CCEEEec
Q 010640 321 GSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLG-ASTVMMG 380 (505)
Q Consensus 321 g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lG-A~~V~~G 380 (505)
.+.. ..+. ..++.++..++||.++..+.+..++..++..| +|.+++-
T Consensus 90 -------P~~~---~d~~---~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d 137 (244)
T d1wufa1 90 -------PFGT---KDFV---DHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLK 137 (244)
T ss_dssp -------CSCS---SCSH---HHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred -------cccc---cchh---hhhccccccccccccCccccchhhhhhhccccccceeecc
Confidence 1100 1122 23444556789999999999999999999999 5888864
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.88 E-value=1.1 Score=42.45 Aligned_cols=67 Identities=24% Similarity=0.290 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHcCCCEEEEccCCcceeecccccccCcChHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHhCCCEE
Q 010640 298 VTMYQAQNLIEAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGVPVIADGGISNSGHIVKALVLGASTV 377 (505)
Q Consensus 298 ~t~e~a~~l~~aGad~I~v~~g~g~~~~~~~~~g~g~p~~~~l~~v~~~~~~~~ipvIa~GGI~~~~di~kal~lGA~~V 377 (505)
...+.+..+.++|+|.|++...-| +. ...+..+.+....+++|||+ |++.|+.-+.. + .|||+|
T Consensus 116 ~~~~r~~~l~~aGvd~ivID~A~G----------h~---~~~i~~lK~ir~~~~~~vIa-GNVaT~e~~~~-l-~gaD~V 179 (368)
T d2cu0a1 116 FDIKRAIELDKAGVDVIVVDTAHA----------HN---LKAIKSMKEMRQKVDADFIV-GNIANPKAVDD-L-TFADAV 179 (368)
T ss_dssp TCHHHHHHHHHTTCSEEEEECSCC----------CC---HHHHHHHHHHHHTCCSEEEE-EEECCHHHHTT-C-TTSSEE
T ss_pred HHHHHHHHHHHcCCCEEEecCccc----------ch---hhhhhhhhhhhhhcccceee-ccccCHHHHHh-h-hcCcce
Confidence 456788889999999998863222 11 11233344555566789988 99999987643 3 699999
Q ss_pred Eec
Q 010640 378 MMG 380 (505)
Q Consensus 378 ~~G 380 (505)
-+|
T Consensus 180 kVG 182 (368)
T d2cu0a1 180 KVG 182 (368)
T ss_dssp EEC
T ss_pred eec
Confidence 877
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.63 E-value=0.66 Score=39.07 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEEcccCCHHHHHHHHHcCCCEEEEc
Q 010640 249 DKERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIGGNVVTMYQAQNLIEAGVDGLRVG 317 (505)
Q Consensus 249 ~~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~g~V~t~e~a~~l~~aGad~I~v~ 317 (505)
..+.+..+++.|+|.+-+|.- .++...+.++.++...|.+.+-+.+-.+.+.+....+.|+|+|.+|
T Consensus 87 ~~~e~~~a~~~g~d~i~LDn~--~pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~~~a~~GVD~Is~g 153 (170)
T d1o4ua1 87 NLEDALRAVEAGADIVMLDNL--SPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSS 153 (170)
T ss_dssp SHHHHHHHHHTTCSEEEEESC--CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGGGGCCTTCCEEEEG
T ss_pred cHHHHHHHHhcCccEEEEcCc--ChhhHhHHHHHHHhhCCcEEEEEECCCCHHHHHHHHHcCCCEEEcC
Confidence 346677788999999998742 2345556667777777777776644556677777888999999876
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=80.62 E-value=2.3 Score=33.10 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCccEEEEeCCCCCchhHHHHHHHHHHhCCCceEEE-cccCCHHHHHHHHHcCCCEE
Q 010640 250 KERLEHLVKAGVNVVVLDSSQGNSSFQIEMIKYAKKTYPELDVIG-GNVVTMYQAQNLIEAGVDGL 314 (505)
Q Consensus 250 ~e~~~~lieaGad~I~i~~~~g~~~~~~~~i~~l~~~~~~~~Vi~-g~V~t~e~a~~l~~aGad~I 314 (505)
.+..+.+.+..+|++.+|..-+... -++.++++++..|++|+++ ....+.+.+..+.++|++.+
T Consensus 37 ~~a~~~l~~~~~dlii~D~~mp~~~-G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~dy 101 (123)
T d1krwa_ 37 NEVLAALASKTPDVLLSDIRMPGMD-GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDY 101 (123)
T ss_dssp HHHHHHHTTCCCSEEEECCSSSSST-THHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHhCCCCEEEehhhcCCch-HHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCeE
Confidence 3555556667899999987544332 3577888888888889876 45568888999999998766
|