Citrus Sinensis ID: 010660

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-----
Protein Sequence
MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPSLKRQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccccccHEEEEEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHHHHcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFergpfafinGTAQILRDCMaeggsvqhLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGhlhatrqgdssidgshsfpvlfeklpevnqegsqwtdceIKDSINLIYQNLQKLDVYLSHMvakhqkprkitRYWVHYTCGAVGLSFCSIWLLRhsslmgssdlENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFseqtkgqklpenasdQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFkqdsraegrGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYdcllpslkrq
Flexible Loop (DISEMBL)
MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSeqtkgqklpenasdqEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKqdsraegrgrvariqrrlIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERmydcllpslkrq
Low Complexity Region (SEG)
MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPSLKRQ
Disordered region (IsUnstruct)
***IFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHAT***********SFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEV************************************EIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLL******
Disordered Region (DISOPRED)
*EHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDC*A**GSV*HLCQSASVHISERITVLTTLRSSLATFLAQVYMEV*****************LLVTINDLFSKLEA***************DGSHSFPVLF******************KDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFET******************NSLHRMLLAFS*******************IVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFK****************RLIIVEVEKR****************HCMFGLVLYSLDRLLHAVKGH*K*TGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPSL***
Disordered Region (DISEMBL)
MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPSLKRQ
Disordered Region (DISPRO)
MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHL************SHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQxxxxxxxxxxxxxxxxxxxxxNEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPSLKRQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	505	2.2.26 [Sep-21-2011]
O74963	573	Nuclear control of ATPase	yes	no	0.558	0.492	0.253	2e-20
Q55GJ3	923	Nuclear control of ATPase	yes	no	0.415	0.227	0.251	1e-18
Q12374	616	Nuclear control of ATPase	yes	no	0.566	0.464	0.246	5e-12
Q753J1	569	Nuclear control of ATPase	yes	no	0.350	0.311	0.273	9e-11

>sp|O74963|NCA2_SCHPO Nuclear control of ATPase protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nca2 PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 144/308 (46%), Gaps = 26/308 (8%)

Query: 197 KPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQP 256
           +P  I R W       + ++  S WL         + +  WI     + V F+ + +++P
Sbjct: 279 RPSAIERNW-----PKIFVTLLSAWLSTQIITKNRTSIRLWIDYLYSTAVDFYTNWIQKP 333

Query: 257 LLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEM--- 313
           +L I D +          +++ + ++    SL RM++ F   T    +  +   QE+   
Sbjct: 334 ILGIFDTIRSNRADSQITLLQTKSLESDMESLQRMVIDFVSDTSPAGINLDLVKQEVQQG 393

Query: 314 -LEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAV 372
            L  V+  YE +L  PI+  V+G L R LLIQ+QK K+D+E A+  +D++L++ E+ FA 
Sbjct: 394 DLTYVLQAYEHDLKTPIRTAVSGNLVRTLLIQLQKTKVDVEVALSGIDRLLKSQELVFAT 453

Query: 373 LAALPAFILSFILLMLVRA-WFKQD--SRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVD 429
           +   P+ I  ++++  V+A  F  D  SRAE R R  +  R        +RI+       
Sbjct: 454 VGITPSLIFCYVIIRYVKANIFNNDTLSRAERRQRFRQSLR------AAERIL----VRS 503

Query: 430 QGLEKEAHCMFGLVLYSLD--RLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRV 487
           Q +       +GL+++ ++   ++    G +K+  E   L QD+ D+         +LR 
Sbjct: 504 QKMNSLDDMSYGLLVFQVNLMAIMSMDMGLSKDVAE--DLLQDLEDIQSSSYGVQAQLRA 561

Query: 488 TSRLERMY 495
             R+ R++
Sbjct: 562 VDRIYRLF 569

Involved in the mitochondrial expression of subunits 6 and 8 of the F0-F1 ATP synthase.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55GJ3|NCA2_DICDI Nuclear control of ATPase protein 2 OS=Dictyostelium discoideum GN=nca2 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 121/231 (52%), Gaps = 21/231 (9%)

Query: 198 PRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPL 257
           P    R WV  + G+V + F   +     S       +    + +D+ + F+++H+E+PL
Sbjct: 573 PNVFIRNWVKLSVGSVIVFFGIKY-----SYDNFDSFKQSAFDIRDAFIRFYHEHLEEPL 627

Query: 258 LSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEI- 316
           L+I + +   + K+   + +   +Q + +SL RM++ ++       +    + Q + ++ 
Sbjct: 628 LNIWNVI--RYDKKSLQLADPASLQSSIDSLGRMVIDYNIDRNHLDINSTETRQHLFQLA 685

Query: 317 -------VMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEIN 369
                  +M  YE  +  P+QN++ G++ R +LIQ+QK K+D++ AM+ +D++L+ANE+N
Sbjct: 686 SRGDISSIMKSYESNIRSPLQNILFGDMIRLILIQIQKEKVDVDKAMVAIDKLLQANELN 745

Query: 370 FAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVA------RIQRRLII 414
           F +LAA+P+ I   +L+  ++  F    +     ++       +I R LI+
Sbjct: 746 FQLLAAIPSAIFLALLIWQIKKLFTNQKKTLPYSQLVIFQTLRKINRTLIL 796

Involved in the mitochondrial expression of subunits 6 and 8 of the F0-F1 ATP synthase.

Dictyostelium discoideum (taxid: 44689)

>sp|Q12374|NCA2_YEAST Nuclear control of ATPase protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCA2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 150/324 (46%), Gaps = 38/324 (11%)

Query: 190 HMVAKHQKPRKITRYWVHYT-CGAVGLS-FCSIWLLRHSSLMGSSDLENWICEAKDSMVG 247
           H + +  KP  +TRYW     C   G S   S+W  R+        ++++I   K ++V 
Sbjct: 307 HPLRRFTKPSILTRYWPSILLCLLYGPSSVMSLWNSRYF-------IQDFI---KTNVVD 356

Query: 248 FFNDHVEQPLLSIRDELFETFRKRHKGVMEV---EEVQMTSNSLHRMLLAF----SEQTK 300
           F    +   L +   +++ T +      + V   E +    +SL RM+++F    S+ T 
Sbjct: 357 FAKGLILNWLWAPLKQVWSTVKHDEGSAISVTSQETLNSDMDSLTRMIVSFVVDNSDSTS 416

Query: 301 GQKLP--------ENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDI 352
              +         E+    E +EI    YE +L HPI+N+  G L R+LLIQ+QK K+D 
Sbjct: 417 NSPIDPILLSTKVEHGDLTEFMEI----YETQLHHPIKNIATGGLVRSLLIQLQKTKVDG 472

Query: 353 ETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRL 412
             A+  +D++L++ ++ F V+A  PA ++ +  ++ ++ + K  +      R  R Q  +
Sbjct: 473 SMALNGIDKMLKSQQLVFGVVALSPALVILYSSIVALKRFVKLGNVWSNEKRY-REQISI 531

Query: 413 IIVEVEKRIMQYQIYVDQGLE-KEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDI 471
            +  VE R++ Y     QG +  E H   GL++  +  L          + + ++ R D+
Sbjct: 532 SLNNVE-RVLNYS---KQGADADEEHLNQGLLVIEVSNLYKLGSFLIPRSRKKEWFR-DV 586

Query: 472 IDLAKPGLQTAYKLRVTSRLERMY 495
            +L    L +   + V +R+  +Y
Sbjct: 587 EELVDTNLDSGAHINVVNRIYHVY 610

Involved in the mitochondrial expression of subunits 6 and 8 of the F0-F1 ATP synthase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q753J1|NCA2_ASHGO Nuclear control of ATPase protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NCA2 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 24/201 (11%)

Query: 197 KPRKITRYW----VHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDH 252
           +P  I RYW    +    G  G++  +IW  R+       D+  +I   K ++  F  D 
Sbjct: 271 QPNWIVRYWPTILIALAGGPAGIA--AIWNARN-------DIAAFI---KHNLFEFARDL 318

Query: 253 VEQPLLSIRDELFETFR---KRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENAS 309
           V+  L+     ++ T          +M    +    NSL RML+ F ++ +     + + 
Sbjct: 319 VKNWLVEPLRNIWSTVHHDPTSSIAIMSQGTLDTEINSLQRMLIDFLKEHEYANTVDTSV 378

Query: 310 -----DQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILR 364
                +Q  L   M  YE +L  PI+NLV G+L R+LLIQ+QK K+D   A+  +D++L+
Sbjct: 379 LMKEIEQGNLTQFMEIYEAQLRKPIRNLVTGDLIRSLLIQIQKGKVDGSLAIHGIDKLLQ 438

Query: 365 ANEINFAVLAALPAFILSFIL 385
           + ++ F +++  PA ++ ++L
Sbjct: 439 SQQLVFGIVSISPALLILYVL 459

Involved in the mitochondrial expression of subunits 6 and 8 of the F0-F1 ATP synthase.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
359479309	594	PREDICTED: uncharacterized protein LOC10	1.0	0.850	0.770	0.0
296083926	615	unnamed protein product [Vitis vinifera]	1.0	0.821	0.739	0.0
255564462	609	conserved hypothetical protein [Ricinus	0.998	0.827	0.774	0.0
357493795	589	Nuclear control of ATPase protein [Medic	0.996	0.853	0.739	0.0
388496762	589	unknown [Medicago truncatula]	0.996	0.853	0.735	0.0
224104547	610	predicted protein [Populus trichocarpa]	1.0	0.827	0.742	0.0
356501380	589	PREDICTED: uncharacterized protein LOC10	0.996	0.853	0.724	0.0
26452571	602	unknown protein [Arabidopsis thaliana]	1.0	0.838	0.659	0.0
297811355	602	hypothetical protein ARALYDRAFT_488073 [	1.0	0.838	0.659	0.0
30684030	602	dgd1 suppressor 1 [Arabidopsis thaliana]	1.0	0.838	0.657	0.0

>gi|359479309|ref|XP_003632255.1| PREDICTED: uncharacterized protein LOC100242629 [Vitis vinifera]

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/505 (77%), Positives = 457/505 (90%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           +EH+FLNLHNIQKNLQFWQSRAE SNA+KAYFM+FERGP AFI  T Q +R+ +A+G S+
Sbjct: 90  LEHLFLNLHNIQKNLQFWQSRAEESNARKAYFMIFERGPRAFITRTVQFIRESVAQGSSL 149

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           Q L QSAS HISERIT+LT+LR SLATFLAQV+++++K+GEELV DPEK L  LLVTIN 
Sbjct: 150 QLLSQSASAHISERITILTSLRYSLATFLAQVHIDIDKFGEELVNDPEKSLSSLLVTING 209

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFSKLEA+IGHLHATRQ DSS+DGS+SFP++FEKLP+VNQEGSQWTDCEI+D+INLIYQN
Sbjct: 210 LFSKLEAAIGHLHATRQSDSSVDGSYSFPLVFEKLPDVNQEGSQWTDCEIRDAINLIYQN 269

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L KLD YLS +V+KH+KPRK+T YW+HYTCGAVGLS CS+WLLRHSSLMGS+D+ENW+ E
Sbjct: 270 LYKLDSYLSILVSKHRKPRKLTLYWIHYTCGAVGLSVCSVWLLRHSSLMGSNDIENWVRE 329

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           A+DS + F+NDHVEQP+LSIRDELFETFRKRH+ VME+E+VQ+T+NSLHRMLL FSEQT+
Sbjct: 330 ARDSTITFWNDHVEQPILSIRDELFETFRKRHRSVMELEDVQLTANSLHRMLLTFSEQTQ 389

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
           GQK PE+ASDQ+MLEIVM+RYEKELMHPIQNL+ GELA ALLIQ+QKLKLDIETAMLEL+
Sbjct: 390 GQKFPEHASDQQMLEIVMARYEKELMHPIQNLLKGELAHALLIQIQKLKLDIETAMLELN 449

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QILRANEINFA+LAALPAF +S +L+MLVRAW KQD+RAEGRGRVARIQRRL++VEVEK 
Sbjct: 450 QILRANEINFAILAALPAFFVSLLLIMLVRAWVKQDTRAEGRGRVARIQRRLLVVEVEKW 509

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           IMQYQ  ++QG EK+A CMFG+VLYSLDRL  AV+ HAK TGEW  LRQDI++LAKPGL 
Sbjct: 510 IMQYQTCMNQGKEKDAQCMFGMVLYSLDRLYRAVERHAKATGEWLCLRQDIVELAKPGLD 569

Query: 481 TAYKLRVTSRLERMYDCLLPSLKRQ 505
           TA KL +T+R+ER+YDCLLPSLKRQ
Sbjct: 570 TASKLILTARMERVYDCLLPSLKRQ 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083926|emb|CBI24314.3| unnamed protein product [Vitis vinifera]

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/526 (73%), Positives = 457/526 (86%), Gaps = 21/526 (3%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           +EH+FLNLHNIQKNLQFWQSRAE SNA+KAYFM+FERGP AFI  T Q +R+ +A+G S+
Sbjct: 90  LEHLFLNLHNIQKNLQFWQSRAEESNARKAYFMIFERGPRAFITRTVQFIRESVAQGSSL 149

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           Q L QSAS HISERIT+LT+LR SLATFLAQV+++++K+GEELV DPEK L  LLVTIN 
Sbjct: 150 QLLSQSASAHISERITILTSLRYSLATFLAQVHIDIDKFGEELVNDPEKSLSSLLVTING 209

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFSKLEA+IGHLHATRQ DSS+DGS+SFP++FEKLP+VNQEGSQWTDCEI+D+INLIYQN
Sbjct: 210 LFSKLEAAIGHLHATRQSDSSVDGSYSFPLVFEKLPDVNQEGSQWTDCEIRDAINLIYQN 269

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L KLD YLS +V+KH+KPRK+T YW+HYTCGAVGLS CS+WLLRHSSLMGS+D+ENW+ E
Sbjct: 270 LYKLDSYLSILVSKHRKPRKLTLYWIHYTCGAVGLSVCSVWLLRHSSLMGSNDIENWVRE 329

Query: 241 AKDSMVGFFNDHVEQP---------------------LLSIRDELFETFRKRHKGVMEVE 279
           A+DS + F+NDHVEQP                     +LSIRDELFETFRKRH+ VME+E
Sbjct: 330 ARDSTITFWNDHVEQPAVLYYLLTNCAKIKEVSKYRSILSIRDELFETFRKRHRSVMELE 389

Query: 280 EVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELAR 339
           +VQ+T+NSLHRMLL FSEQT+GQK PE+ASDQ+MLEIVM+RYEKELMHPIQNL+ GELA 
Sbjct: 390 DVQLTANSLHRMLLTFSEQTQGQKFPEHASDQQMLEIVMARYEKELMHPIQNLLKGELAH 449

Query: 340 ALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRA 399
           ALLIQ+QKLKLDIETAMLEL+QILRANEINFA+LAALPAF +S +L+MLVRAW KQD+RA
Sbjct: 450 ALLIQIQKLKLDIETAMLELNQILRANEINFAILAALPAFFVSLLLIMLVRAWVKQDTRA 509

Query: 400 EGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAK 459
           EGRGRVARIQRRL++VEVEK IMQYQ  ++QG EK+A CMFG+VLYSLDRL  AV+ HAK
Sbjct: 510 EGRGRVARIQRRLLVVEVEKWIMQYQTCMNQGKEKDAQCMFGMVLYSLDRLYRAVERHAK 569

Query: 460 ETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPSLKRQ 505
            TGEW  LRQDI++LAKPGL TA KL +T+R+ER+YDCLLPSLKRQ
Sbjct: 570 ATGEWLCLRQDIVELAKPGLDTASKLILTARMERVYDCLLPSLKRQ 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564462|ref|XP_002523227.1| conserved hypothetical protein [Ricinus communis] gi|223537523|gb|EEF39148.1| conserved hypothetical protein [Ricinus communis]

 Score =  818 bits (2113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/505 (77%), Positives = 454/505 (89%), Gaps = 1/505 (0%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGG-S 59
           +EHI +NLH++QKNL FWQSRAEGSN++K YFMMFERGP A I+GT Q+L+ C+A+GG S
Sbjct: 105 IEHILINLHSVQKNLHFWQSRAEGSNSRKLYFMMFERGPRALIDGTLQLLQQCIADGGPS 164

Query: 60  VQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIN 119
           + H+CQSAS +ISER+TVLTTLR  LATFLA+VYMEV++ GE LV+DPEK    LLVTIN
Sbjct: 165 LHHVCQSASSYISERLTVLTTLRRGLATFLAEVYMEVDRCGEALVKDPEKSFSSLLVTIN 224

Query: 120 DLFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQ 179
            LFS LEASIGHLHATRQ DSS+DGS+SFP+LFE LPEVN EGSQW  CEIKD+INL+ +
Sbjct: 225 GLFSNLEASIGHLHATRQTDSSVDGSYSFPLLFETLPEVNSEGSQWMGCEIKDAINLVNK 284

Query: 180 NLQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWIC 239
           NLQKLD Y+S +VAKHQKP+K+T+YW+ YTCGA+GLS CS+WLLRHS  MGSSD++NW+ 
Sbjct: 285 NLQKLDSYVSVIVAKHQKPKKVTQYWIRYTCGAIGLSVCSMWLLRHSRFMGSSDIDNWVR 344

Query: 240 EAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQT 299
           EAKDS V FF++HVEQPL+SIRDELF+TFRKRHKGVME+EEVQ+T+NSLHRMLLAFSEQT
Sbjct: 345 EAKDSTVSFFSEHVEQPLVSIRDELFDTFRKRHKGVMEIEEVQLTANSLHRMLLAFSEQT 404

Query: 300 KGQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLEL 359
           KGQKLPENASDQE+LEIVM+RYEKELMHPIQNL+NGELARALLIQVQKLKLDIETAMLEL
Sbjct: 405 KGQKLPENASDQELLEIVMNRYEKELMHPIQNLLNGELARALLIQVQKLKLDIETAMLEL 464

Query: 360 DQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEK 419
           DQIL+ANEINFAVLAALPAF LS  LLMLVRAWFK+D++AEG+GR+AR QRRL++VEVEK
Sbjct: 465 DQILKANEINFAVLAALPAFFLSLSLLMLVRAWFKRDTKAEGKGRIARRQRRLLLVEVEK 524

Query: 420 RIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGL 479
           RIMQYQ +VDQGLE E+ CMFGL+L SLDRL HAV+ HAKETGEWQ L+QDI DL KP +
Sbjct: 525 RIMQYQTFVDQGLENESQCMFGLMLCSLDRLFHAVERHAKETGEWQSLKQDIFDLGKPSI 584

Query: 480 QTAYKLRVTSRLERMYDCLLPSLKR 504
           QT YKL VTSR+ER+Y+CLLPSLKR
Sbjct: 585 QTTYKLVVTSRMERVYECLLPSLKR 609

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493795|ref|XP_003617186.1| Nuclear control of ATPase protein [Medicago truncatula] gi|355518521|gb|AET00145.1| Nuclear control of ATPase protein [Medicago truncatula]

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/503 (73%), Positives = 446/503 (88%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           +E +  N+H IQKNLQFWQS A+ S+ +KAYFM+FERGP AFI  T ++LR   A+  S+
Sbjct: 85  LERVLTNMHRIQKNLQFWQSIAQKSDNRKAYFMVFERGPRAFIGETVKLLRGRAAQDSSL 144

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           Q++CQSAS +++ER+TVL+ LR SLA FLAQ+Y+EV+K GEEL+ DPE  LP LLVTIN+
Sbjct: 145 QNICQSASDYVNERVTVLSFLRCSLAIFLAQIYVEVDKVGEELITDPEHKLPSLLVTINE 204

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFS LEASIGHLHA RQ DSS+DG++S P+LFEKLPE+NQ+GSQWTDCEI+D+I+ +YQN
Sbjct: 205 LFSTLEASIGHLHAVRQSDSSVDGTYSIPLLFEKLPEINQDGSQWTDCEIRDAISSVYQN 264

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L KL+ Y+  +V KH+KP+ IT++WVHY CGAVGLS CS+WLLRHSSLMGSSDL+NWI E
Sbjct: 265 LDKLESYICSLVVKHRKPKNITQHWVHYACGAVGLSVCSLWLLRHSSLMGSSDLDNWIQE 324

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           AKDS VGFF DHVEQP+LSIRDELFETFRKRH+G+M+ EEV++TSNSLHRMLLAFSEQTK
Sbjct: 325 AKDSTVGFFTDHVEQPILSIRDELFETFRKRHQGIMDFEEVRLTSNSLHRMLLAFSEQTK 384

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
           GQK P NASDQEMLEIVM RYEKELMHPIQNL+NGELARA+LIQVQKLKLDIETAMLEL+
Sbjct: 385 GQKSPVNASDQEMLEIVMDRYEKELMHPIQNLLNGELARAMLIQVQKLKLDIETAMLELN 444

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QILRANEINFAVLAALPAF +S +L+MLVRAWFKQD++AEGRGRVARIQRRL++VEVE+R
Sbjct: 445 QILRANEINFAVLAALPAFFISLLLIMLVRAWFKQDTKAEGRGRVARIQRRLLVVEVERR 504

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           IMQ+QIYV+QGLE++AH M GL+LYSLDRL  +VK HA+ +GEWQ LRQDIIDLA+PGLQ
Sbjct: 505 IMQHQIYVEQGLERDAHYMLGLILYSLDRLYSSVKRHAEASGEWQCLRQDIIDLARPGLQ 564

Query: 481 TAYKLRVTSRLERMYDCLLPSLK 503
           T++KL VTSR+ ++YDCLLP L+
Sbjct: 565 TSHKLAVTSRIIKVYDCLLPVLR 587

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496762|gb|AFK36447.1| unknown [Medicago truncatula]

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/503 (73%), Positives = 445/503 (88%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           +E +  ++H IQKNLQFWQS A+ S+ +KAYFM+FERGP AFI  T ++LR   A+  S+
Sbjct: 85  LERVLTSMHRIQKNLQFWQSIAQKSDNRKAYFMVFERGPRAFIGETVKLLRGRAAQDSSL 144

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           Q++CQSAS +++ER+TVL+ LR SLA FLAQ+Y+EV+K GEEL+ DPE  LP LLVTIN+
Sbjct: 145 QNICQSASDYVNERVTVLSFLRCSLAIFLAQIYVEVDKVGEELITDPEHKLPSLLVTINE 204

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFS LEASIGHLHA RQ DSS+DG++S P+LFEKLPE+NQ+GSQWTDCEI+D+I+ +YQN
Sbjct: 205 LFSTLEASIGHLHAVRQSDSSVDGTYSIPLLFEKLPEINQDGSQWTDCEIRDAISSVYQN 264

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L KL+ Y+  +V KH+KP+ IT++WVHY CGAVGLS CS+WLLRHSSLMGSSD +NWI E
Sbjct: 265 LDKLESYICSLVVKHRKPKNITQHWVHYACGAVGLSVCSLWLLRHSSLMGSSDPDNWIQE 324

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           AKDS VGFF DHVEQP+LSIRDELFETFRKRH+G+M+ EEV++TSNSLHRMLLAFSEQTK
Sbjct: 325 AKDSTVGFFTDHVEQPILSIRDELFETFRKRHQGIMDFEEVRLTSNSLHRMLLAFSEQTK 384

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
           GQK P NASDQEMLEIVM RYEKELMHPIQNL+NGELARA+LIQVQKLKLDIETAMLEL+
Sbjct: 385 GQKSPVNASDQEMLEIVMDRYEKELMHPIQNLLNGELARAMLIQVQKLKLDIETAMLELN 444

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QILRANEINFAVLAALPAF +S +L+MLVRAWFKQD++AEGRGRVARIQRRL++VEVE+R
Sbjct: 445 QILRANEINFAVLAALPAFFISLLLIMLVRAWFKQDTKAEGRGRVARIQRRLLVVEVERR 504

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           IMQ+QIYV+QGLE++AH M GL+LYSLDRL  +VK HA+ +GEWQ LRQDIIDLA+PGLQ
Sbjct: 505 IMQHQIYVEQGLERDAHYMLGLILYSLDRLYSSVKRHAEASGEWQCLRQDIIDLARPGLQ 564

Query: 481 TAYKLRVTSRLERMYDCLLPSLK 503
           T++KL VTSR+ ++YDCLLP L+
Sbjct: 565 TSHKLAVTSRIIKVYDCLLPVLR 587

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104547|ref|XP_002313474.1| predicted protein [Populus trichocarpa] gi|222849882|gb|EEE87429.1| predicted protein [Populus trichocarpa]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/505 (74%), Positives = 441/505 (87%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           M HIF++LHNIQ NLQFWQ   E SNA+K YFM+FERGP AF+ GTA++LR  + +G S+
Sbjct: 106 MGHIFIHLHNIQDNLQFWQPLIEASNARKLYFMIFERGPNAFLGGTAKVLRQSIVDGWSM 165

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           QHL Q AS +ISERI +L+ LR ++ATFLA+VYMEV++ GE+LVEDPEK  P LL  IN 
Sbjct: 166 QHLSQFASAYISERIVILSNLRCAIATFLAEVYMEVDRRGEQLVEDPEKSFPPLLAVINH 225

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFS LEASIGHLHA RQ DSS++GS+SFP++FEK P+VNQEGSQWTDCEI D+IN +Y+N
Sbjct: 226 LFSNLEASIGHLHAIRQTDSSVEGSYSFPLVFEKSPKVNQEGSQWTDCEISDAINAVYKN 285

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L+KLD Y+S MV+KHQKP K++++W+ +TCG VGLSFCS WLLRHS LMGS D++NW+ E
Sbjct: 286 LEKLDSYISVMVSKHQKPSKLSQHWIRHTCGVVGLSFCSSWLLRHSRLMGSPDIDNWVRE 345

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           AKDS + FFNDHVEQPLLSIRDELF+TFRKRHKGVMEVEEVQ+T++SLHRMLLAFSEQTK
Sbjct: 346 AKDSTISFFNDHVEQPLLSIRDELFDTFRKRHKGVMEVEEVQLTASSLHRMLLAFSEQTK 405

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
            QK PE+ASDQEMLEIVM RYE+EL HPIQNL+ GELA ALLIQVQKLKLDIETAMLELD
Sbjct: 406 VQKFPEHASDQEMLEIVMDRYEQELTHPIQNLLKGELAHALLIQVQKLKLDIETAMLELD 465

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QIL+ANEINFA+LAALPAF LS +LLML+RAWFK+D+RAEGRGR+AR QRRL++VEVEK 
Sbjct: 466 QILKANEINFAILAALPAFFLSLLLLMLLRAWFKRDTRAEGRGRIARRQRRLLLVEVEKG 525

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           I QYQ YV+QGLEKE+ CMFGLVL+ LDRL HAV+GHAK TGEWQ+LRQDIIDL KP LQ
Sbjct: 526 IAQYQTYVNQGLEKESQCMFGLVLHCLDRLFHAVEGHAKATGEWQWLRQDIIDLGKPRLQ 585

Query: 481 TAYKLRVTSRLERMYDCLLPSLKRQ 505
           T YKL V SR+ER+Y+CLLPSL+RQ
Sbjct: 586 TDYKLMVLSRMERVYECLLPSLRRQ 610

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501380|ref|XP_003519503.1| PREDICTED: uncharacterized protein LOC100799669 [Glycine max]

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/504 (72%), Positives = 436/504 (86%), Gaps = 1/504 (0%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           +E + +NLH++QKNLQFWQSRA+ S+++KA FM+FERGP AFI+ T ++LR   A+G S 
Sbjct: 86  LERVLINLHSVQKNLQFWQSRAKRSDSEKARFMIFERGPRAFIDETVKLLRGLTAQGSST 145

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           Q+L QSAS +I ER+  L++LR SLATFLAQVYMEV+K GE+LVEDPE  LP LLVTI+ 
Sbjct: 146 QNLSQSASDYIDERVGFLSSLRYSLATFLAQVYMEVDKIGEDLVEDPETKLPSLLVTISV 205

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFS LEASIGHLHA RQ DSS+DGS+S P+LFEK+PE+NQEGSQWTDCEI+D+IN +YQN
Sbjct: 206 LFSTLEASIGHLHAMRQSDSSVDGSYSTPLLFEKVPEINQEGSQWTDCEIRDAINSVYQN 265

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L KLD Y+S +V KH+KPRKIT+YW+ YTCGAVGLS CSIWLLRHS L+GSSDL+NW+ E
Sbjct: 266 LNKLDSYISFLVIKHRKPRKITQYWIRYTCGAVGLSVCSIWLLRHSRLVGSSDLDNWVQE 325

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           A++S   FF +HVE+P+ SIRDELF+TF+KRH+G+M+VEEVQ+TSNSLHRMLLAFSEQTK
Sbjct: 326 ARNSTYSFFRNHVEEPIFSIRDELFDTFKKRHQGIMDVEEVQLTSNSLHRMLLAFSEQTK 385

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
           GQK P NASDQEM+EIVM RYEKELMHPIQNL+NGEL RA+LIQVQKLKLD ETAMLEL+
Sbjct: 386 GQKFPVNASDQEMMEIVMDRYEKELMHPIQNLLNGELVRAILIQVQKLKLDTETAMLELN 445

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QILRANEINFAVL ALPAF LS +L+MLVR WFKQD++AEGRGRVARIQRRL+++EV+KR
Sbjct: 446 QILRANEINFAVLTALPAFFLSLLLMMLVRGWFKQDTKAEGRGRVARIQRRLLVIEVKKR 505

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           IMQYQ YVDQGLE++A  MFGL LYSLDRL H+VK HA+ TGEW+ LR+DIIDLAKP LQ
Sbjct: 506 IMQYQNYVDQGLERDAEYMFGLALYSLDRLYHSVKWHAEATGEWERLREDIIDLAKPRLQ 565

Query: 481 TAYKLRVTSRLERMYDCLLPSLKR 504
           T++K  V S +   +DCLLPS  R
Sbjct: 566 TSHKESVISHMV-TFDCLLPSRNR 588

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452571|dbj|BAC43370.1| unknown protein [Arabidopsis thaliana]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/505 (65%), Positives = 426/505 (84%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           M  +  NLH+IQK+L FW+SRAEGSNA+KAYFM+FERGP AF+N + + +   ++EG ++
Sbjct: 98  MADVLSNLHDIQKSLDFWRSRAEGSNARKAYFMIFERGPTAFVNESTKFVSKSLSEGSAM 157

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           QHLCQS+S H++ER+ VL  LRS+LA+F+AQ+Y+E++K GE+LV+ PEK LP LL  IN 
Sbjct: 158 QHLCQSSSSHMTERMRVLVELRSALASFIAQLYVELDKRGEDLVKIPEKALPSLLAVING 217

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFS LE S  HLHA R+ DSS+DGS+  P++F++LPEVN+EGSQWTDCE+ D+INL+++N
Sbjct: 218 LFSNLEGSFSHLHAVRECDSSVDGSYPMPLVFDRLPEVNEEGSQWTDCELTDAINLVHKN 277

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L+KL+ YLS MV KH+KPR++T YWV YTCGAVGLS  SIWLLRHSSLMGSSD+ENW+ +
Sbjct: 278 LEKLNSYLSVMVGKHRKPRRMTLYWVRYTCGAVGLSVFSIWLLRHSSLMGSSDIENWVHD 337

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           AK++ + FF+DHVEQPLLSIRDELF+TFRKRHKGVME EEVQ+T +SLHRML  F EQ  
Sbjct: 338 AKEATMSFFSDHVEQPLLSIRDELFDTFRKRHKGVMETEEVQLTQDSLHRMLRNFCEQAT 397

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
            +K+P+NASDQEMLE+VM+RYEKEL+HPI NL++GELAR LLIQVQKLKLDIETAMLELD
Sbjct: 398 REKVPDNASDQEMLEVVMNRYEKELVHPIHNLLSGELARGLLIQVQKLKLDIETAMLELD 457

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QILRANEINFA+LAALPAF LS ++L ++R W K+DS+A+GRGR+ARI RRL++VE+EKR
Sbjct: 458 QILRANEINFAILAALPAFFLSIVMLTVLRTWLKKDSKAQGRGRIARIHRRLLVVEIEKR 517

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           IMQYQ Y++QG +K+A  +FGL++YSL+RL   V+  A+ T EW  ++QD+I+L +P  Q
Sbjct: 518 IMQYQSYIEQGRDKDAETVFGLLIYSLERLYRVVEKPARATDEWDLVKQDLIELGRPQQQ 577

Query: 481 TAYKLRVTSRLERMYDCLLPSLKRQ 505
           T+YKL VT RL  +YDCLLP+LKRQ
Sbjct: 578 TSYKLTVTQRLVTVYDCLLPTLKRQ 602

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811355|ref|XP_002873561.1| hypothetical protein ARALYDRAFT_488073 [Arabidopsis lyrata subsp. lyrata] gi|297319398|gb|EFH49820.1| hypothetical protein ARALYDRAFT_488073 [Arabidopsis lyrata subsp. lyrata]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/505 (65%), Positives = 425/505 (84%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           M  +  NLH+IQK+L FW+SRAEGSNA+KAYFM+FERGP AF+N + + +   ++E  ++
Sbjct: 98  MADVLSNLHDIQKSLDFWRSRAEGSNARKAYFMIFERGPTAFVNESTKFVSKSLSEDSAM 157

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           QHLCQS+S H++ER+ VL  LRS+LA+FLAQ+Y+E++K GE+LV++PEK LP LL  IN 
Sbjct: 158 QHLCQSSSSHMTERMRVLVELRSALASFLAQLYVELDKRGEDLVKNPEKSLPSLLAVING 217

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFS LE S  HLHA R+ DSS+DGS+  P++F++LPEVN+EGSQWTDCE+ D+INL ++N
Sbjct: 218 LFSNLEGSFSHLHAERECDSSVDGSYPMPLVFDRLPEVNEEGSQWTDCELTDAINLAHKN 277

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L+KL+ YLS MV KH+KPR++T YWV YTCGAVGLS  SIWLLRHSSLMGSSD+ENW+ +
Sbjct: 278 LEKLNSYLSVMVGKHRKPRRMTLYWVRYTCGAVGLSVFSIWLLRHSSLMGSSDIENWVHD 337

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           AK++ + FF+DHVEQPLLSIRDELF+TFRKRHKGVME EEVQ+T +SLHRML  F EQ  
Sbjct: 338 AKEATMSFFSDHVEQPLLSIRDELFDTFRKRHKGVMETEEVQLTQDSLHRMLRNFCEQAT 397

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
            +K+P+NASDQEMLE+VM+RYEKEL+HPI NL++GELAR LLIQVQKLKLDIETAMLELD
Sbjct: 398 REKVPDNASDQEMLEVVMNRYEKELVHPIHNLLSGELARGLLIQVQKLKLDIETAMLELD 457

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QILRANEINFA+LAALPAF LS ++L ++R W K+DS+A+GRGR+ARI RRL++VE+EKR
Sbjct: 458 QILRANEINFAILAALPAFFLSIVMLTVLRTWLKKDSKAQGRGRIARIHRRLLVVEIEKR 517

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           IMQYQ Y++QG +K+A  +FGL++YSL+RL   V+  A+ T EW  ++QD+I+L +P  Q
Sbjct: 518 IMQYQSYIEQGRDKDAETVFGLLIYSLERLYRVVEKPARATDEWDLVKQDLIELGRPQQQ 577

Query: 481 TAYKLRVTSRLERMYDCLLPSLKRQ 505
           T+YKL VT RL  +YDCLLP+LKRQ
Sbjct: 578 TSYKLTVTQRLVTVYDCLLPTLKRQ 602

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684030|ref|NP_568262.2| dgd1 suppressor 1 [Arabidopsis thaliana] gi|27311689|gb|AAO00810.1| putative protein [Arabidopsis thaliana] gi|30725404|gb|AAP37724.1| At5g12290 [Arabidopsis thaliana] gi|332004405|gb|AED91788.1| dgd1 suppressor 1 [Arabidopsis thaliana]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/505 (65%), Positives = 425/505 (84%)

Query: 1   MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
           M  +  NLH+IQK+L FW+SRAEGSNA+KAYFM+FERGP AF+N + + +   ++E  ++
Sbjct: 98  MADVLSNLHDIQKSLDFWRSRAEGSNARKAYFMIFERGPTAFVNESTKFVSKSLSEDSAM 157

Query: 61  QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
           QHLCQS+S H++ER+ VL  LRS+LA+F+AQ+Y+E++K GE+LV+ PEK LP LL  IN 
Sbjct: 158 QHLCQSSSSHMTERMRVLVELRSALASFIAQLYVELDKRGEDLVKIPEKALPSLLAVING 217

Query: 121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
           LFS LE S  HLHA R+ DSS+DGS+  P++F++LPEVN+EGSQWTDCE+ D+INL+++N
Sbjct: 218 LFSNLEGSFSHLHAVRECDSSVDGSYPMPLVFDRLPEVNEEGSQWTDCELTDAINLVHKN 277

Query: 181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
           L+KL+ YLS MV KH+KPR++T YWV YTCGAVGLS  SIWLLRHSSLMGSSD+ENW+ +
Sbjct: 278 LEKLNSYLSVMVGKHRKPRRMTLYWVRYTCGAVGLSVFSIWLLRHSSLMGSSDIENWVHD 337

Query: 241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
           AK++ + FF+DHVEQPLLSIRDELF+TFRKRHKGVME EEVQ+T +SLHRML  F EQ  
Sbjct: 338 AKEATMSFFSDHVEQPLLSIRDELFDTFRKRHKGVMETEEVQLTQDSLHRMLRNFCEQAT 397

Query: 301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
            +K+P+NASDQEMLE+VM+RYEKEL+HPI NL++GELAR LLIQVQKLKLDIETAMLELD
Sbjct: 398 REKVPDNASDQEMLEVVMNRYEKELVHPIHNLLSGELARGLLIQVQKLKLDIETAMLELD 457

Query: 361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
           QILRANEINFA+LAALPAF LS ++L ++R W K+DS+A+GRGR+ARI RRL++VE+EKR
Sbjct: 458 QILRANEINFAILAALPAFFLSIVMLTVLRTWLKKDSKAQGRGRIARIHRRLLVVEIEKR 517

Query: 421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
           IMQYQ Y++QG +K+A  +FGL++YSL+RL   V+  A+ T EW  ++QD+I+L +P  Q
Sbjct: 518 IMQYQSYIEQGRDKDAETVFGLLIYSLERLYRVVEKPARATDEWDLVKQDLIELGRPQQQ 577

Query: 481 TAYKLRVTSRLERMYDCLLPSLKRQ 505
           T+YKL VT RL  +YDCLLP+LKRQ
Sbjct: 578 TSYKLTVTQRLVTVYDCLLPTLKRQ 602

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	505
TAIR|locus:505006597	602	DGS1 "DGD1 SUPPRESSOR 1" [Arab	1.0	0.838	0.657	5e-186
POMBASE|SPBC4B4.02c	573	nca2 "mitochondrial protein Nc	0.645	0.568	0.245	3.5e-19
DICTYBASE|DDB_G0267648	923	DDB_G0267648 [Dictyostelium di	0.421	0.230	0.265	8.3e-19
SGD|S000006359	616	NCA2 "Protein that regulates e	0.572	0.469	0.249	6.9e-13
UNIPROTKB|G4N5K6	672	MGG_06134 "Uncharacterized pro	0.493	0.370	0.258	2.8e-11
CGD|CAL0004805	701	orf19.349 [Candida albicans (t	0.431	0.310	0.234	2.2e-10
UNIPROTKB|Q5AEB9	701	NCA2 "Putative uncharacterized	0.431	0.310	0.234	2.2e-10

TAIR|locus:505006597 DGS1 "DGD1 SUPPRESSOR 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1804 (640.1 bits), Expect = 5.0e-186, P = 5.0e-186
 Identities = 332/505 (65%), Positives = 425/505 (84%)

Query:     1 MEHIFLNLHNIQKNLQFWQSRAEGSNAQKAYFMMFERGPFAFINGTAQILRDCMAEGGSV 60
             M  +  NLH+IQK+L FW+SRAEGSNA+KAYFM+FERGP AF+N + + +   ++E  ++
Sbjct:    98 MADVLSNLHDIQKSLDFWRSRAEGSNARKAYFMIFERGPTAFVNESTKFVSKSLSEDSAM 157

Query:    61 QHLCQSASVHISERITVLTTLRSSLATFLAQVYMEVEKYGEELVEDPEKLLPFLLVTIND 120
             QHLCQS+S H++ER+ VL  LRS+LA+F+AQ+Y+E++K GE+LV+ PEK LP LL  IN 
Sbjct:   158 QHLCQSSSSHMTERMRVLVELRSALASFIAQLYVELDKRGEDLVKIPEKALPSLLAVING 217

Query:   121 LFSKLEASIGHLHATRQGDSSIDGSHSFPVLFEKLPEVNQEGSQWTDCEIKDSINLIYQN 180
             LFS LE S  HLHA R+ DSS+DGS+  P++F++LPEVN+EGSQWTDCE+ D+INL+++N
Sbjct:   218 LFSNLEGSFSHLHAVRECDSSVDGSYPMPLVFDRLPEVNEEGSQWTDCELTDAINLVHKN 277

Query:   181 LQKLDVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICE 240
             L+KL+ YLS MV KH+KPR++T YWV YTCGAVGLS  SIWLLRHSSLMGSSD+ENW+ +
Sbjct:   278 LEKLNSYLSVMVGKHRKPRRMTLYWVRYTCGAVGLSVFSIWLLRHSSLMGSSDIENWVHD 337

Query:   241 AKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTK 300
             AK++ + FF+DHVEQPLLSIRDELF+TFRKRHKGVME EEVQ+T +SLHRML  F EQ  
Sbjct:   338 AKEATMSFFSDHVEQPLLSIRDELFDTFRKRHKGVMETEEVQLTQDSLHRMLRNFCEQAT 397

Query:   301 GQKLPENASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELD 360
              +K+P+NASDQEMLE+VM+RYEKEL+HPI NL++GELAR LLIQVQKLKLDIETAMLELD
Sbjct:   398 REKVPDNASDQEMLEVVMNRYEKELVHPIHNLLSGELARGLLIQVQKLKLDIETAMLELD 457

Query:   361 QILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIVEVEKR 420
             QILRANEINFA+LAALPAF LS ++L ++R W K+DS+A+GRGR+ARI RRL++VE+EKR
Sbjct:   458 QILRANEINFAILAALPAFFLSIVMLTVLRTWLKKDSKAQGRGRIARIHRRLLVVEIEKR 517

Query:   421 IMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQ 480
             IMQYQ Y++QG +K+A  +FGL++YSL+RL   V+  A+ T EW  ++QD+I+L +P  Q
Sbjct:   518 IMQYQSYIEQGRDKDAETVFGLLIYSLERLYRVVEKPARATDEWDLVKQDLIELGRPQQQ 577

Query:   481 TAYKLRVTSRLERMYDCLLPSLKRQ 505
             T+YKL VT RL  +YDCLLP+LKRQ
Sbjct:   578 TSYKLTVTQRLVTVYDCLLPTLKRQ 602

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0019375 "galactolipid biosynthetic process" evidence=IMP

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA;IMP

GO:0043234 "protein complex" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

POMBASE|SPBC4B4.02c nca2 "mitochondrial protein Nca2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 258 (95.9 bits), Expect = 3.5e-19, P = 3.5e-19
 Identities = 88/359 (24%), Positives = 169/359 (47%)

Query:   150 VLFEKLPEVNQ-EGSQWTDCE-IKDSINLIYQNLQK-LDVYLSHMVAK-HQKPRKITRYW 205
             V+ + +  ++Q +G +  + E + D +++   NL    D Y     AK + +P  I R W
Sbjct:   231 VVSQWIQRLSQLQGQKIDNSESLPDILSITLDNLSHPTDEYFE---AKAYFRPSAIERNW 287

Query:   206 VHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQPLLSIRDELF 265
                    + ++  S WL         + +  WI     + V F+ + +++P+L I D + 
Sbjct:   288 PK-----IFVTLLSAWLSTQIITKNRTSIRLWIDYLYSTAVDFYTNWIQKPILGIFDTIR 342

Query:   266 ETFRKRHKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEM----LEIVMSRY 321
                      +++ + ++    SL RM++ F   T    +  +   QE+    L  V+  Y
Sbjct:   343 SNRADSQITLLQTKSLESDMESLQRMVIDFVSDTSPAGINLDLVKQEVQQGDLTYVLQAY 402

Query:   322 EKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFIL 381
             E +L  PI+  V+G L R LLIQ+QK K+D+E A+  +D++L++ E+ FA +   P+ I 
Sbjct:   403 EHDLKTPIRTAVSGNLVRTLLIQLQKTKVDVEVALSGIDRLLKSQELVFATVGITPSLIF 462

Query:   382 SFILLMLVRA-WFKQD--SRAEGRGRVARIQRRLIIVEVEKRIMQYQIYVDQGLEKEAHC 438
              ++++  V+A  F  D  SRAE R R  +  R       E+ +++      Q +      
Sbjct:   463 CYVIIRYVKANIFNNDTLSRAERRQRFRQSLRA-----AERILVR-----SQKMNSLDDM 512

Query:   439 MFGLVLYSLD--RLLHAVKGHAKETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMY 495
              +GL+++ ++   ++    G +K+  E   L QD+ D+         +LR   R+ R++
Sbjct:   513 SYGLLVFQVNLMAIMSMDMGLSKDVAE--DLLQDLEDIQSSSYGVQAQLRAVDRIYRLF 569

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016071 "mRNA metabolic process" evidence=ISO

DICTYBASE|DDB_G0267648 DDB_G0267648 [Dictyostelium discoideum (taxid:44689)]

 Score = 242 (90.2 bits), Expect = 8.3e-19, Sum P(3) = 8.3e-19
 Identities = 61/230 (26%), Positives = 122/230 (53%)

Query:   179 QNL-QKL-DVYLSHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLEN 236
             QNL  KL +V +  +      P    R WV  + G+V + F  I      S       + 
Sbjct:   552 QNLINKLMEVMVKRLSGNLSIPNVFIRNWVKLSVGSV-IVFFGI----KYSYDNFDSFKQ 606

Query:   237 WICEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFS 296
                + +D+ + F+++H+E+PLL+I + +   + K+   + +   +Q + +SL RM++ ++
Sbjct:   607 SAFDIRDAFIRFYHEHLEEPLLNIWNVI--RYDKKSLQLADPASLQSSIDSLGRMVIDYN 664

Query:   297 EQTKGQKLPENASDQEMLEI--------VMSRYEKELMHPIQNLVNGELARALLIQVQKL 348
                    +    + Q + ++        +M  YE  +  P+QN++ G++ R +LIQ+QK 
Sbjct:   665 IDRNHLDINSTETRQHLFQLASRGDISSIMKSYESNIRSPLQNILFGDMIRLILIQIQKE 724

Query:   349 KLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSR 398
             K+D++ AM+ +D++L+ANE+NF +LAA+P+ I   +L+  ++  F    +
Sbjct:   725 KVDVDKAMVAIDKLLQANELNFQLLAAIPSAIFLALLIWQIKKLFTNQKK 774

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

SGD|S000006359 NCA2 "Protein that regulates expression of Fo-F1 ATP synthase subunits" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 202 (76.2 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 80/321 (24%), Positives = 151/321 (47%)

Query:   190 HMVAKHQKPRKITRYWVHYT-CGAVG-LSFCSIWLLRHSSLMGSSDLENWICEAKDSMVG 247
             H + +  KP  +TRYW     C   G  S  S+W  R+        ++++I   K ++V 
Sbjct:   307 HPLRRFTKPSILTRYWPSILLCLLYGPSSVMSLWNSRYF-------IQDFI---KTNVVD 356

Query:   248 FFNDHVEQPLLSIRDELFETFRKRHKGVMEV---EEVQMTSNSLHRMLLAF----SEQTK 300
             F    +   L +   +++ T +      + V   E +    +SL RM+++F    S+ T 
Sbjct:   357 FAKGLILNWLWAPLKQVWSTVKHDEGSAISVTSQETLNSDMDSLTRMIVSFVVDNSDSTS 416

Query:   301 GQKL-PENASDQ----EMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETA 355
                + P   S +    ++ E  M  YE +L HPI+N+  G L R+LLIQ+QK K+D   A
Sbjct:   417 NSPIDPILLSTKVEHGDLTEF-MEIYETQLHHPIKNIATGGLVRSLLIQLQKTKVDGSMA 475

Query:   356 MLELDQILRANEINFAVLAALPAFILSFILLMLVRAWFKQDSRAEGRGRVARIQRRLIIV 415
             +  +D++L++ ++ F V+A  PA ++ +  ++ ++ + K  +      R  R Q  + + 
Sbjct:   476 LNGIDKMLKSQQLVFGVVALSPALVILYSSIVALKRFVKLGNVWSNEKRY-REQISISLN 534

Query:   416 EVEKRIMQYQIYVDQGLEK-EAHCMFGLVLYSLDRLLHAVKGHAKETGEWQYLRQDIIDL 474
              VE R++ Y     QG +  E H   GL++  +  L          + + ++ R D+ +L
Sbjct:   535 NVE-RVLNYS---KQGADADEEHLNQGLLVIEVSNLYKLGSFLIPRSRKKEWFR-DVEEL 589

Query:   475 AKPGLQTAYKLRVTSRLERMY 495
                 L +   + V +R+  +Y
Sbjct:   590 VDTNLDSGAHINVVNRIYHVY 610

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0016071 "mRNA metabolic process" evidence=IMP

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0009060 "aerobic respiration" evidence=IMP

UNIPROTKB|G4N5K6 MGG_06134 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 188 (71.2 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 71/275 (25%), Positives = 122/275 (44%)

Query:   189 SHMVAKHQKPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGF 248
             + +V +H +P ++ RYW+  T     L   S  +L+   +    D+  WI +   +M  F
Sbjct:   361 NELVKEHGRPPRLVRYWLPATV----LLLSSSTILK-VLVNRQEDVLQWIADLGATMRDF 415

Query:   249 FNDHVEQPLLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRMLLAFS-EQTK--GQKLP 305
             + + V +P   +   +          +M  + ++   +SL RM++ F+ E+ +  G    
Sbjct:   416 WFNWVIEPTRKVVGTIRHDSNSEI-AIMSRDSLRADRDSLERMVVEFALERPELAGATSA 474

Query:   306 ENASDQEMLEI---------VMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAM 356
              N S    L           V+  YE EL  P    + G+L R+LLIQVQK K+D+ETA+
Sbjct:   475 LNESQVSDLRAKIREGDVTPVLKAYESELKRPFVGAIRGDLLRSLLIQVQKTKVDLETAI 534

Query:   357 LELDQILRANEINFAVLAALPAFILSFILLMLVRAWF---KQDSRAEGRGRVARIQRRL- 412
               +D +L++ E+ F  +   P  ++++     +R      K   R E   R  R+ R + 
Sbjct:   535 SGIDALLKSQELVFGFVGLTPGILVTYFGFQYLRTLLSGRKGTRRGERAVRAVRVLRNID 594

Query:   413 -IIVEVEKRIMQYQI--YVDQGLEK-EAHCMFGLV 443
              I  +      Q  +  Y D GL   E H +  LV
Sbjct:   595 RIFSDAMSSPSQDNLLPYKDYGLLVCEVHVLRKLV 629

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016071 "mRNA metabolic process" evidence=ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISS

CGD|CAL0004805 orf19.349 [Candida albicans (taxid:5476)]

 Score = 180 (68.4 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 55/235 (23%), Positives = 106/235 (45%)

Query:   167 DCEIKDSINLIYQNLQKLDVYLSHMVAKHQK--------PRKITRYWVHYTCGAVGLSFC 218
             D      +N +YQ  + + +     V K  K        P  +TRYW+      + L   
Sbjct:   344 DHPTSQDLNTVYQKKKNMILQAMEHVVKFDKQSYDLTSAPGFLTRYWI-----IIALVIF 398

Query:   219 SIWLLRHSSLMGSSDLENWI-CEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVME 277
                           ++  W+     + +VGFF + V +P+  + D L  T       +  
Sbjct:   399 YGPSQTKKVYANRQEIIYWVKYNGIEPVVGFFKNWVIKPVYDMLDILRNTSSDSQLSITS 458

Query:   278 VEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEM---LEIVMSRYEKELMHPIQNLVN 334
              + +    +SL+ M+  F++           +D      L+I+MS YE E+  PI+ L+ 
Sbjct:   459 KDSLNSEFDSLNSMIYQFAQDNHIDVSESQITDDIKNGDLKIIMSTYENEIKSPIKYLIT 518

Query:   335 GELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLV 389
             G L R +LIQ+QK K+D   A+  +D++L++ ++ FA+++  P+ ++ + +  L+
Sbjct:   519 GSLLRLILIQIQKGKVDGAMAINGIDKLLKSQQLLFAMVSISPSILILYQMYRLL 573

GO:0003674 "molecular_function" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016071 "mRNA metabolic process" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IEA

UNIPROTKB|Q5AEB9 NCA2 "Putative uncharacterized protein NCA2" [Candida albicans SC5314 (taxid:237561)]

 Score = 180 (68.4 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 55/235 (23%), Positives = 106/235 (45%)

Query:   167 DCEIKDSINLIYQNLQKLDVYLSHMVAKHQK--------PRKITRYWVHYTCGAVGLSFC 218
             D      +N +YQ  + + +     V K  K        P  +TRYW+      + L   
Sbjct:   344 DHPTSQDLNTVYQKKKNMILQAMEHVVKFDKQSYDLTSAPGFLTRYWI-----IIALVIF 398

Query:   219 SIWLLRHSSLMGSSDLENWI-CEAKDSMVGFFNDHVEQPLLSIRDELFETFRKRHKGVME 277
                           ++  W+     + +VGFF + V +P+  + D L  T       +  
Sbjct:   399 YGPSQTKKVYANRQEIIYWVKYNGIEPVVGFFKNWVIKPVYDMLDILRNTSSDSQLSITS 458

Query:   278 VEEVQMTSNSLHRMLLAFSEQTKGQKLPENASDQEM---LEIVMSRYEKELMHPIQNLVN 334
              + +    +SL+ M+  F++           +D      L+I+MS YE E+  PI+ L+ 
Sbjct:   459 KDSLNSEFDSLNSMIYQFAQDNHIDVSESQITDDIKNGDLKIIMSTYENEIKSPIKYLIT 518

Query:   335 GELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFILLMLV 389
             G L R +LIQ+QK K+D   A+  +D++L++ ++ FA+++  P+ ++ + +  L+
Sbjct:   519 GSLLRLILIQIQKGKVDGAMAINGIDKLLKSQQLLFAMVSISPSILILYQMYRLL 573


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      505       505   0.00086  119 3  11 22  0.48    33
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  300 KB (2155 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  50.05u 0.14s 50.19t   Elapsed:  00:00:02
  Total cpu time:  50.05u 0.14s 50.19t   Elapsed:  00:00:02
  Start:  Sat May 11 00:17:30 2013   End:  Sat May 11 00:17:32 2013

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	505
pfam08637	290	pfam08637, NCA2, ATP synthase regulation protein N	1e-68

>gnl|CDD|219946 pfam08637, NCA2, ATP synthase regulation protein NCA2

 Score =  221 bits (565), Expect = 1e-68
 Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 22/296 (7%)

Query: 216 SFCSIWLLRHSSLM----GSSDLENWI-CEAKDSMVGFFNDHVEQPLLSIRDELFETFRK 270
           +  S+ L   SSL         +E+WI   AK+++ GFF + V +P+  I D L      
Sbjct: 1   TVLSVLLYGPSSLSNLWQNRQSIEDWIKTNAKETVRGFFKNWVWEPIKQIWDTLRHDN-S 59

Query: 271 RHKGVMEVEEVQMTSNSLHRMLLAFSEQTKG------QKLPENASDQEMLEIVMSRYEKE 324
               VM  + +Q   +SL RM++ F            Q+L +     ++ E VM  YEKE
Sbjct: 60  SEISVMSKDTLQSDMDSLERMVVDFVVDNYPPGGVDLQQLTDKVRQGDLTE-VMKIYEKE 118

Query: 325 LMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFILSFI 384
           L HPI++LV G L R+LLIQ+QK K+D E A+  +D++L++ ++ F ++A  PA ++ + 
Sbjct: 119 LRHPIKSLVTGSLVRSLLIQLQKTKVDGEVAINGIDKLLKSQQLVFGIVAISPALLILYG 178

Query: 385 LLMLVRAWFKQDSRAEGRGRVARIQRRLI--IVEVEKRIMQYQIYVDQG-LEKEAHCMFG 441
           LL  +R   K  S+     R+   Q R++  +  +E R++ Y     +    +  +   G
Sbjct: 179 LLQYLRTSLKSGSKWSKGLRIRGKQLRILESLRNIE-RLLNYPQDDGENKDAELGNKNRG 237

Query: 442 LVLYSLDRL-LHAVKGHAKE-TGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMY 495
           L+L  +  L   + K   K    EW    +D+ DL       + KL V  R+  +Y
Sbjct: 238 LLLLEVSNLRRLSSKLLPKSRKREW---LRDLDDLESSQSTVSAKLNVIERIWHVY 290

NCA2 has been shown to be required for the regulation of ATP synthase subunits Atp6p and Atp8p in Saccharomyces cerevisiae. Length = 290

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	505
PF08637	290	NCA2: ATP synthase regulation protein NCA2; InterP	100.0

>PF08637 NCA2: ATP synthase regulation protein NCA2; InterPro: IPR013946 NCA2 (Nuclear Control of ATPase), is one of the two nuclear genes involved in the control of mitochondrial expression of subunits 6 and 8 of the Fo-F1 ATP synthase in Saccharomyces cerevisiae (Baker's yeast)

Probab=100.00  E-value=7.2e-76  Score=592.64  Aligned_cols=261  Identities=36%  Similarity=0.542  Sum_probs=228.5

Q ss_pred             CchhHHHHHH-HHHHHHHHHhHhhhHHhhHhhHHHHHHHhhhc---CCCccchHHHhhchhHHHHHHHHHHhhccCCCCC
Q 010660          230 GSSDLENWIC-EAKDSMVGFFNDHVEQPLLSIRDELFETFRKR---HKGVMEVEEVQMTSNSLHRMLLAFSEQTKGQKLP  305 (505)
Q Consensus       230 ~~~~i~~wi~-~~~etv~~F~~nwV~~Pl~~Ir~el~~T~R~~---~~~ims~~sL~sd~~SLeRMv~dF~~D~~~~~~~  305 (505)
                      ++++|.+|++ ++++|++|||+|||++|+++|+    +|+||+   +.++||+++|++|++||+|||+||++|+++.+..
T Consensus        19 ~r~~i~~wi~~~~~~t~~~f~~nwV~~Pl~~I~----~tlr~d~~s~~~i~s~~sL~~d~~SLeRMv~dF~~d~~~~~~~   94 (290)
T PF08637_consen   19 NRDEIDNWIQENAVETVRGFWKNWVWEPLKSIW----DTLRHDEKSEIAIMSKESLQSDMESLERMVVDFAKDNSPNMPA   94 (290)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            6799999999 8999999999999999999964    566774   4579999999999999999999999999876542


Q ss_pred             CC-----cChhhHHHHHHHHHHHhhhchhHHhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHhhhHHHH
Q 010660          306 EN-----ASDQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQVQKLKLDIETAMLELDQILRANEINFAVLAALPAFI  380 (505)
Q Consensus       306 ~~-----~~e~~~lt~Vm~~YE~elk~Pikn~v~G~LvR~LLIQVQK~KVD~e~Am~gIDkLLkSqeL~F~~va~~Pa~l  380 (505)
                      +.     ..++++||+||++||+||||||||+|+|+|+|+|||||||+|||++.||+|||||||||||||||||++|||+
T Consensus        95 ~~~~l~~~v~~Gdlt~Vm~~YE~el~~Pik~~v~G~LvR~LLIQvQK~KVD~~~Am~gID~LLkSneL~F~iva~~Pa~l  174 (290)
T PF08637_consen   95 DLEELRQQVREGDLTPVMKRYEKELKHPIKNIVRGDLVRALLIQVQKTKVDVEVAMSGIDKLLKSNELNFGIVAASPAFL  174 (290)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhHHHH
Confidence            11     1245789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCcccccchhHHHHHHHH--HHHHHHHHHhhhhcccccCcchhhhccchhHHHHHHHHHHHhhccC
Q 010660          381 LSFILLMLVRAWFKQDSRAEGRGRVARIQRRL--IIVEVEKRIMQYQIYVDQGLEKEAHCMFGLVLYSLDRLLHAVKGHA  458 (505)
Q Consensus       381 i~~~~~~~~~~~~~~~~~~~~rgr~~~~~rr~--lL~~IER~L~~~~~~~~~~~~~~~~~~~GLLL~el~~L~~~~~~~~  458 (505)
                      ++|+++++++++++.+++..++++..+.++++  +|++|||+|+....+.......++++++|+|+|++|+||+.+..+.
T Consensus       175 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ieRlL~~~~~~~~~~~~~~~~~~~GlLl~~~~~L~~~~~~~~  254 (290)
T PF08637_consen  175 ISYGLYRWLRRLFKSRKGARRRRRQRRKQRRMRRSLRNIERLLNSSNNETPTQDGELSYKDHGLLLLELHRLRRSAERLL  254 (290)
T ss_pred             HHHHHHHHHHHHHccCccccccchhhHHHHHHHHHHHHHHHHHhccccccccccccchHHhHhHHHHHHHHHHHHHHHhC
Confidence            99999999999999888876666766566655  7899999998655422333455678999999999999999988643


Q ss_pred             CchhHHhhHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 010660          459 KETGEWQYLRQDIIDLAKPGLQTAYKLRVTSRLERMY  495 (505)
Q Consensus       459 ~~~~Ew~~f~eDL~dL~~~~l~~~~KL~vv~Rm~~~Y  495 (505)
                       +..++.+|+|||+||++++.++++|++|++||||+|
T Consensus       255 -p~~~~~e~~eDl~dL~~~~~~~~~kl~vv~Rm~~~Y  290 (290)
T PF08637_consen  255 -PASERREWLEDLNDLADPRLGVSQKLRVVERMWRSY  290 (290)
T ss_pred             -CHhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhhC
Confidence             445566667999999999999999999999999999

Mutations in either NCA2 or NCA3 (IPR005556 from INTERPRO) dramatically lower the level of the co-transcript encoding subunits 6 and 8 [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	505
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 59/352 (16%), Positives = 105/352 (29%), Gaps = 89/352 (25%)

Query: 41  AFINGTAQIL---RD-CMAEGGSVQHLCQSASVHISERITVLTTLRSSLATFLAQVYMEV 96
           AF N + +IL   R   + +  S       +  H S     LT      +  L  +    
Sbjct: 261 AF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM---TLTP-DEVKSLLLKYLDCRP 315

Query: 97  EK---------------YGEELVEDPEKLLPFLLVTINDLFSKLEASIGHLHATRQGDSS 141
           +                  E + +       +  V  + L + +E+S+  L         
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-------EP 368

Query: 142 IDGSHSFP--VLFE---KLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQ 196
            +    F    +F     +P +      W D    D + +    + KL  Y   +V K  
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVV----VNKLHKYS--LVEKQP 421

Query: 197 KPRKITRYWVHYTCGAVGLSFCSIWLLRHSSLMGSSDLENWICEAKDSMVGFFNDHVEQP 256
           K        +            SI+L     L     L   I +  +    F +D +  P
Sbjct: 422 KES---TISIP-----------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 257 LLSIRDELFETFRKRHKGVMEVEEVQMTSNSLHRML---LAFSEQT-KGQKLPENAS--- 309
            L   D+ F +    H   +E  E      +L RM+     F EQ  +      NAS   
Sbjct: 468 YL---DQYFYSHIGHHLKNIEHPE----RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 310 ----------------DQEMLEIVMSRYEKELMHPIQNLVNGELARALLIQV 345
                           +    E +++     L    +NL+  +     L+++
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD--LLRI 570

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 52/415 (12%), Positives = 115/415 (27%), Gaps = 120/415 (28%)

Query: 152 FEKLPEVNQEGSQWTDCEIKDSINLIYQNLQKLDVYLSHMVAKHQKPRKITRYWVHYTCG 211
           ++ +  V ++     + + KD  ++    L K ++   H++        ++         
Sbjct: 18  YKDILSVFEDAFV-DNFDCKDVQDMPKSILSKEEI--DHII---MSKDAVSG-------- 63

Query: 212 AVGLSFCSIWLLRHSS------LMGSSDLEN--WICEAKDSMVGFFNDHVEQPLL----- 258
               +    W L           +      N  ++                QP +     
Sbjct: 64  ----TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-------IKTEQRQPSMMTRMY 112

Query: 259 -SIRDELF---ETFRK----RHKGVMEVEEV--QMTSNS---LHRML------LAFSEQT 299
              RD L+   + F K    R +  +++ +   ++       +  +L      +A     
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--- 169

Query: 300 KGQKLPENASDQEMLEIVMSRYEKELMHPIQ----NLVNGELARALLIQVQKLKLDIETA 355
                            V   Y+ +     +    NL N      +L  +QKL   I+  
Sbjct: 170 -----------------VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 356 MLEL-----DQILRANEINFAV--LAALPAFILSFILLMLVRAWFKQDSRA-EGRGRVAR 407
                    +  LR + I   +  L     +     LL+L+     +   A     ++  
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKILL 270

Query: 408 IQRRLIIVEVEKRIMQYQIYVDQ---GL-EKEAHCMFGLVL-YSLDRLLH-AVKGH---- 457
             R   + +         I +D     L   E   +    L      L    +  +    
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 458 ---AKETGE----WQYLRQDIIDLAKPGLQTAYKLRVTSRLERMYDCLLPSLKRQ 505
              A+   +    W   +    D            ++T+ +E   + L P+  R+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD------------KLTTIIESSLNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00