Citrus Sinensis ID: 010666

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRSSSTSSSKEVQRPQEQHRPPPSDISRPSSRSSRKAPGQLQL
ccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHcHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
MLSDSSHEIRQQADSALWEFLQEIknspsvdygRMAEILVQRAASPDEFTRLTAITWINEFVKlggdqlvpyYADILGAilpcisdkeEKIRVVARETNEELRAikadpadgfdvgpiLSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSlvnpagkdLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLktvpsfsfngeqikrtssgnpysqilhsmpsgsqfsedgdvnsdvgsshggiNFASRLQQFEQMQHQHRIHgkaqaqlrssstssskevqrpqeqhrpppsdisrpssrssrkapgqlql
MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEElraikadpadgfdvgPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDnsllekrgaliIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVpsfsfngeqikrtssgnpySQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRSsstssskevqrpqeqhrpppsdisrpssrssrkapgqlql
MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQAlnlilltsselselrdllkkslVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWllkalygllmllPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRssstsssKEVQRPQEQHrpppsdisrpssrssrKAPGQLQL
***************ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSF****************************************************************************************************************
M****SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD********ARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLL****VNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRL****************************************************NFASRLQQFEQ*********************************************************
***********QADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFE**********************************************************
****SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSF******************************************GINFASRLQQFEQMQHQHRIHGKAQ*********************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLRSSSTSSSKEVQRPQEQHRPPPSDISRPSSRSSRKAPGQLQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query504 2.2.26 [Sep-21-2011]
Q68F38782 Protein VAC14 homolog OS= N/A no 0.847 0.546 0.340 2e-72
Q66L58771 Protein VAC14 homolog OS= yes no 0.845 0.552 0.349 6e-71
Q80W92783 Protein VAC14 homolog OS= yes no 0.847 0.545 0.339 8e-71
Q5ZIW5780 Protein VAC14 homolog OS= yes no 0.767 0.496 0.362 8e-71
Q80WQ2782 Protein VAC14 homolog OS= yes no 0.843 0.543 0.340 2e-69
Q08AM6782 Protein VAC14 homolog OS= yes no 0.847 0.546 0.349 3e-69
A2VE70783 Protein VAC14 homolog OS= yes no 0.847 0.545 0.341 1e-68
P87145811 Protein VAC14 homolog OS= yes no 0.738 0.458 0.370 3e-63
Q06708880 Vacuole morphology and in yes no 0.700 0.401 0.324 4e-46
>sp|Q68F38|VAC14_XENLA Protein VAC14 homolog OS=Xenopus laevis GN=vac14 PE=2 SV=1 Back     alignment and function desciption
 Score =  273 bits (698), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 276/564 (48%), Gaps = 137/564 (24%)

Query: 1   MLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWIN 59
           +L D+S EIR+  + +L EFL+EIK  P SV +  MA ILV    S D+  +LTA+TW+ 
Sbjct: 224 ILGDNSKEIRKMCEVSLGEFLKEIKKLPDSVKFAEMANILVIHCQSTDDLIQLTAMTWMR 283

Query: 60  EFVKLGGDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEEL--------------- 102
           EF++L G  ++PY + IL A+LPC+S  D+++ I+ VA   N+ L               
Sbjct: 284 EFLQLAGRVMLPYSSGILTAVLPCLSYDDRKKNIKEVANVCNQSLMKLITPEDDETDEVR 343

Query: 103 -------------------------RAIKADPADGFD------------------VGPIL 119
                                    R + + P    D                  +  I+
Sbjct: 344 QSPATQPDEDFSSNHENSSQHTTYNRTLPSAPDSSLDNANIFAPSSMNTCPVSLNLDGIV 403

Query: 120 SIATRQL--SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLL 177
            +  R L  S+    TRI  L W+  L  +   ++    + +F  LLK LSD SDEV+L 
Sbjct: 404 HVLDRHLHESTTGMMTRICVLKWLYHLYIKTPRKMFRHTDSLFPILLKTLSDESDEVILK 463

Query: 178 VLEV---------------------------------------HACIAKDLQ-------- 190
            LEV                                       H  + + L+        
Sbjct: 464 DLEVLAEIASSPAGQTDIVTDCNDLPTGMSELHVPVPTKVTQAHGSVIRGLECSPSTPTM 523

Query: 191 --HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFAC 248
             +F + +V L+  F  +  LLE RGA IIR+LC+LL+AE ++  ++ IL  E DL FA 
Sbjct: 524 NSYFHRFMVNLLKRFSNERKLLEIRGAFIIRQLCLLLNAENIFHSMADILLREEDLKFAS 583

Query: 249 TMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTY 308
           TMVQ LN ILLTSSEL +LR  LK  L  P   +LF  LY SWCH+P+A +SLC L Q Y
Sbjct: 584 TMVQNLNSILLTSSELFQLRSQLK-DLQTPESCNLFCCLYRSWCHNPVATVSLCFLTQNY 642

Query: 309 HHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLM 368
            HA  +IQ   + ++ V FL ++DKL++L+E PIF YLRLQLL+     +L++ALYGLLM
Sbjct: 643 QHAYNLIQKFGDLEVTVDFLTEVDKLVQLIECPIFTYLRLQLLDVENNPYLIRALYGLLM 702

Query: 369 LLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSD 428
           LLP QS+AF++L  RL+ VP+      Q+ R           H     S+  ++      
Sbjct: 703 LLP-QSSAFQLLSHRLQCVPN-----PQLMRPG---------HKQEESSRAPKEDP---- 743

Query: 429 VGSSHGGINFASRLQQFEQMQHQH 452
                  I++   LQ FE++Q++H
Sbjct: 744 -----ARIDYVELLQHFEKVQNKH 762
The PI(3,5)P2 regulatory complex regulates both the synthesis and turnover of phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Acts as a positive activator of PIKfyve kinase activity.
Xenopus laevis (taxid: 8355)
>sp|Q66L58|VAC14_DANRE Protein VAC14 homolog OS=Danio rerio GN=vac14 PE=2 SV=1 Back     alignment and function description
>sp|Q80W92|VAC14_RAT Protein VAC14 homolog OS=Rattus norvegicus GN=Vac14 PE=1 SV=1 Back     alignment and function description
>sp|Q5ZIW5|VAC14_CHICK Protein VAC14 homolog OS=Gallus gallus GN=VAC14 PE=2 SV=1 Back     alignment and function description
>sp|Q80WQ2|VAC14_MOUSE Protein VAC14 homolog OS=Mus musculus GN=Vac14 PE=1 SV=1 Back     alignment and function description
>sp|Q08AM6|VAC14_HUMAN Protein VAC14 homolog OS=Homo sapiens GN=VAC14 PE=1 SV=1 Back     alignment and function description
>sp|A2VE70|VAC14_BOVIN Protein VAC14 homolog OS=Bos taurus GN=VAC14 PE=2 SV=1 Back     alignment and function description
>sp|P87145|VAC14_SCHPO Protein VAC14 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC25H2.03 PE=3 SV=1 Back     alignment and function description
>sp|Q06708|VAC14_YEAST Vacuole morphology and inheritance protein 14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC14 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
255570069 728 conserved hypothetical protein [Ricinus 1.0 0.692 0.891 0.0
225424372 727 PREDICTED: protein VAC14 homolog [Vitis 0.998 0.691 0.868 0.0
147782112 727 hypothetical protein VITISV_014540 [Viti 0.998 0.691 0.868 0.0
224101889 725 predicted protein [Populus trichocarpa] 1.0 0.695 0.881 0.0
356524533 722 PREDICTED: protein VAC14 homolog [Glycin 0.986 0.688 0.85 0.0
224108275 724 predicted protein [Populus trichocarpa] 0.998 0.694 0.849 0.0
356502378 724 PREDICTED: protein VAC14 homolog [Glycin 0.996 0.693 0.823 0.0
449449244 738 PREDICTED: protein VAC14 homolog [Cucumi 0.994 0.678 0.798 0.0
356511291 691 PREDICTED: protein VAC14 homolog [Glycin 0.928 0.677 0.876 0.0
357521307 736 VAC14-like protein [Medicago truncatula] 0.984 0.673 0.798 0.0
>gi|255570069|ref|XP_002525997.1| conserved hypothetical protein [Ricinus communis] gi|223534729|gb|EEF36421.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  887 bits (2291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/507 (89%), Positives = 472/507 (93%), Gaps = 3/507 (0%)

Query: 1   MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE 60
           MLSDSSHEIRQQADSAL EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE
Sbjct: 222 MLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE 281

Query: 61  FVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS 120
           FVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA+GF VGPILS
Sbjct: 282 FVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAEGFVVGPILS 341

Query: 121 IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 180
           IA RQLSSEWEATRIEALHWIS LLNRHR+EVL FLNDIFDTLLKALSDPSDEVVLLVLE
Sbjct: 342 IARRQLSSEWEATRIEALHWISNLLNRHRSEVLCFLNDIFDTLLKALSDPSDEVVLLVLE 401

Query: 181 VHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 240
           +HACIAKD  HFRQLVVFLVHNFR+D SLLEKRGALIIRRLCVLLDAERVYRELSTILEG
Sbjct: 402 IHACIAKDPLHFRQLVVFLVHNFRIDISLLEKRGALIIRRLCVLLDAERVYRELSTILEG 461

Query: 241 EADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIIS 300
           EADLDFA  MVQALNLILLTSSEL+ELR+LLK+SLVNPAGKDLFVSLYASWCHSPMAIIS
Sbjct: 462 EADLDFASIMVQALNLILLTSSELAELRNLLKQSLVNPAGKDLFVSLYASWCHSPMAIIS 521

Query: 301 LCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLL 360
           LCLLAQTY HAS VIQSLVEED+NVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLL
Sbjct: 522 LCLLAQTYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLL 581

Query: 361 KALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFS 420
           KAL GLLMLLPQ+SAAFKILRTRLKTVPS+SFNG+QIKRT SGNPYSQILH +PSGSQ S
Sbjct: 582 KALNGLLMLLPQKSAAFKILRTRLKTVPSYSFNGDQIKRTPSGNPYSQILHHIPSGSQTS 641

Query: 421 EDGDVNSDVGSS--HGGINFASRLQQFEQMQHQHRIHGKAQAQLRSSSTSSSKEVQRPQE 478
           EDGDVN D G+S  H GINF+SRLQQFEQMQ QHR+H KAQAQ R++ T SSKEV RP+E
Sbjct: 642 EDGDVNQDTGNSSFHNGINFSSRLQQFEQMQQQHRMHAKAQAQSRNNCTFSSKEVPRPEE 701

Query: 479 QHRP-PPSDISRPSSRSSRKAPGQLQL 504
              P   SDI+RP SRSSR+ PGQLQL
Sbjct: 702 PRGPSSASDINRPPSRSSRRGPGQLQL 728

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225424372|ref|XP_002284995.1| PREDICTED: protein VAC14 homolog [Vitis vinifera] gi|297737634|emb|CBI26835.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147782112|emb|CAN65293.1| hypothetical protein VITISV_014540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101889|ref|XP_002312461.1| predicted protein [Populus trichocarpa] gi|222852281|gb|EEE89828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356524533|ref|XP_003530883.1| PREDICTED: protein VAC14 homolog [Glycine max] Back     alignment and taxonomy information
>gi|224108275|ref|XP_002314784.1| predicted protein [Populus trichocarpa] gi|222863824|gb|EEF00955.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356502378|ref|XP_003519996.1| PREDICTED: protein VAC14 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449449244|ref|XP_004142375.1| PREDICTED: protein VAC14 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|356511291|ref|XP_003524360.1| PREDICTED: protein VAC14 homolog [Glycine max] Back     alignment and taxonomy information
>gi|357521307|ref|XP_003630942.1| VAC14-like protein [Medicago truncatula] gi|355524964|gb|AET05418.1| VAC14-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query504
TAIR|locus:2065423744 AT2G01690 "AT2G01690" [Arabido 0.932 0.631 0.740 1.7e-178
DICTYBASE|DDB_G0289233801 DDB_G0289233 "VAC14 family pro 0.472 0.297 0.411 4e-64
UNIPROTKB|F1NWG6780 VAC14 "Protein VAC14 homolog" 0.390 0.252 0.381 1e-61
UNIPROTKB|Q5ZIW5780 VAC14 "Protein VAC14 homolog" 0.390 0.252 0.376 2.9e-61
MGI|MGI:2157980782 Vac14 "Vac14 homolog (S. cerev 0.390 0.251 0.376 3.7e-61
UNIPROTKB|Q08AM6782 VAC14 "Protein VAC14 homolog" 0.390 0.251 0.376 2.9e-60
UNIPROTKB|F1MJZ1783 VAC14 "Protein VAC14 homolog" 0.390 0.251 0.381 3.3e-60
ZFIN|ZDB-GENE-040912-82771 vac14 "vac14 homolog (S. cerev 0.390 0.255 0.386 3.4e-60
RGD|631410783 Vac14 "Vac14 homolog (S. cerev 0.390 0.251 0.371 3.8e-60
UNIPROTKB|A2VE70783 VAC14 "Protein VAC14 homolog" 0.390 0.251 0.381 4.2e-60
TAIR|locus:2065423 AT2G01690 "AT2G01690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1733 (615.1 bits), Expect = 1.7e-178, P = 1.7e-178
 Identities = 359/485 (74%), Positives = 392/485 (80%)

Query:     1 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE 60
             MLSDSSHEIRQQADSAL EFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE
Sbjct:   223 MLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE 282

Query:    61 FVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS 120
             FVKLGGDQLV YYADILGAILPCISDKEEKIRVVARETNEELR+I  +P+DGFDVG ILS
Sbjct:   283 FVKLGGDQLVRYYADILGAILPCISDKEEKIRVVARETNEELRSIHVEPSDGFDVGAILS 342

Query:   121 IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLE 180
             +A RQLSSE+EATRIEAL+WISTLLN+HRTEVL FLNDIFDTLLKALSD SD+VVLLVLE
Sbjct:   343 VARRQLSSEFEATRIEALNWISTLLNKHRTEVLCFLNDIFDTLLKALSDSSDDVVLLVLE 402

Query:   181 VHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 240
             VHA +AKD QHFRQL+VFLVHNFR DNSLLE+RGALI+RR+CVLLDAERVYRELSTILEG
Sbjct:   403 VHAGVAKDPQHFRQLIVFLVHNFRADNSLLERRGALIVRRMCVLLDAERVYRELSTILEG 462

Query:   241 EADLDFACTMVQAXXXXXXXXXXXXXXXXXXXXXXVNPAGKDLFVSLYASWCHSPMAIIS 300
             E +LDFA TMVQA                      VN  GK+LFV+LY SWCHSPMAIIS
Sbjct:   463 EDNLDFASTMVQALNLILLTSPELSKLRELLKGSLVNREGKELFVALYTSWCHSPMAIIS 522

Query:   301 LCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWXX 360
             LCLLAQ Y HAS VIQSLVEED+NVKFLVQLDKLIRLLETPIF YLRLQLLEPGRYTW  
Sbjct:   523 LCLLAQAYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPIFTYLRLQLLEPGRYTWLL 582

Query:   361 XXXXXXXXXXPQQSAAFKILRTRLKTVPSFSFN-GEQIKRTSSGNPYSQILHSMPSGSQF 419
                       PQQSAAFKILRTRLKTVP++SF+ G QI R +SG P+SQ  H        
Sbjct:   583 KTLYGLLMLLPQQSAAFKILRTRLKTVPTYSFSTGNQIGRATSGVPFSQYKHQ------- 635

Query:   420 SEDGDVNSD-VGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQLR----XXXXXXXKEVQ 474
             +EDGD+  D + SSH GINFA RLQQFE +Q+ HR  G+A+ ++            KEV+
Sbjct:   636 NEDGDLEDDNINSSHQGINFAVRLQQFENVQNLHR--GQARTRVNYSYHSSSSSTSKEVR 693

Query:   475 RPQEQ 479
             R +EQ
Sbjct:   694 RSEEQ 698
GO:0008150 "biological_process" evidence=ND
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
DICTYBASE|DDB_G0289233 DDB_G0289233 "VAC14 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWG6 VAC14 "Protein VAC14 homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIW5 VAC14 "Protein VAC14 homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2157980 Vac14 "Vac14 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q08AM6 VAC14 "Protein VAC14 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJZ1 VAC14 "Protein VAC14 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-82 vac14 "vac14 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|631410 Vac14 "Vac14 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A2VE70 VAC14 "Protein VAC14 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
pfam11916181 pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-te 1e-90
>gnl|CDD|221312 pfam11916, Vac14_Fig4_bd, Vacuolar protein 14 C-terminal Fig4p binding Back     alignment and domain information 
 Score =  274 bits (702), Expect = 1e-90
 Identities = 115/183 (62%), Positives = 141/183 (77%), Gaps = 2/183 (1%)

Query: 206 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELS 265
           D  LLE+RG LIIR+LC+LL+AERVYR L++ILE E DL+FA  MVQ LN ILLTS ELS
Sbjct: 1   DRKLLERRGNLIIRQLCLLLNAERVYRTLASILEEEEDLEFASKMVQTLNTILLTSPELS 60

Query: 266 ELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNV 325
           ELR  L+  L   A + LF SLY SWCH+P++ +SLCLL+Q Y HA  ++QSL E ++ V
Sbjct: 61  ELRKKLRN-LTLKADQSLFSSLYRSWCHNPVSALSLCLLSQAYEHAYNLLQSLGELEITV 119

Query: 326 KFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLK 385
            FLVQ+DKL++LLE+P+F YLRLQLLEP +Y +L K LYGLLMLLP QS AF  LR RL+
Sbjct: 120 DFLVQIDKLVQLLESPVFTYLRLQLLEPEKYPYLYKCLYGLLMLLP-QSTAFNTLRNRLQ 178

Query: 386 TVP 388
            VP
Sbjct: 179 CVP 181

Vac14 is a scaffold for the Fab1 kinase complex, a complex that allows for the dynamic interconversion of PI3P and PI(3,5)P2p (phosphoinositide phosphate (PIP) lipids, that are generated transiently on the cytoplasmic face of selected intracellular membranes). This interconversion is regulated by at least five proteins in yeast: the lipid kinase Fab1p, lipid phosphatase Fig4p, the Fab1p activator Vac7p, the Fab1p inhibitor Atg18p, and Vac14p, a protein required for the activity of both Fab1p and Fig4p. The C-terminal region of Vac14 binds to Fig4p. The full length Vac14 in yeasts is likely to be a protein carrying a succession of HEAT repeats, most of which have now degenerated. This regulatory system is crucial for the proper functioning of the mammalian nervous system. Length = 181

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 504
KOG0212675 consensus Uncharacterized conserved protein [Funct 100.0
PF11916182 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4 100.0
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.96
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.61
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.48
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.32
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.01
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.0
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.91
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.87
PRK09687280 putative lyase; Provisional 97.86
KOG1242569 consensus Protein containing adaptin N-terminal re 97.84
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.76
PTZ00429 746 beta-adaptin; Provisional 97.72
KOG1242569 consensus Protein containing adaptin N-terminal re 97.68
PRK09687280 putative lyase; Provisional 97.63
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.61
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 97.57
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.56
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.49
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.44
PTZ00429 746 beta-adaptin; Provisional 97.43
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.29
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.23
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 97.13
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.01
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.0
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.99
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 96.98
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 96.98
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 96.96
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.92
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 96.89
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.79
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 96.79
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 96.74
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.54
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 96.51
KOG12481176 consensus Uncharacterized conserved protein [Funct 96.47
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.47
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 96.26
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.23
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.22
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.12
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 95.99
PF08167165 RIX1: rRNA processing/ribosome biogenesis 95.94
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.86
KOG04141251 consensus Chromosome condensation complex Condensi 95.65
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 95.6
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.58
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 95.45
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 95.32
KOG2259823 consensus Uncharacterized conserved protein [Funct 95.21
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 95.14
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 95.08
KOG2032533 consensus Uncharacterized conserved protein [Funct 94.89
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 94.83
KOG1820815 consensus Microtubule-associated protein [Cytoskel 94.56
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 94.55
KOG22741005 consensus Predicted importin 9 [Intracellular traf 94.36
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 94.31
KOG12481176 consensus Uncharacterized conserved protein [Funct 94.3
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 94.11
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.99
KOG4653982 consensus Uncharacterized conserved protein [Funct 93.61
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 93.03
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 93.03
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 92.94
PF14663115 RasGEF_N_2: Rapamycin-insensitive companion of mTO 92.91
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 92.71
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 92.68
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 92.63
COG50981128 Chromosome condensation complex Condensin, subunit 92.61
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 92.47
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 92.38
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 92.2
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 92.1
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 92.09
COG5096 757 Vesicle coat complex, various subunits [Intracellu 92.08
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 91.89
KOG45241014 consensus Uncharacterized conserved protein [Funct 91.82
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 91.67
PF14500262 MMS19_N: Dos2-interacting transcription regulator 91.58
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 91.57
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 91.42
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 91.33
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.1
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.89
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 90.82
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 90.81
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 90.68
PF05804708 KAP: Kinesin-associated protein (KAP) 90.14
KOG22741005 consensus Predicted importin 9 [Intracellular traf 90.14
KOG2032533 consensus Uncharacterized conserved protein [Funct 89.87
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 89.71
KOG2956516 consensus CLIP-associating protein [General functi 89.63
KOG1243690 consensus Protein kinase [General function predict 89.52
KOG1820815 consensus Microtubule-associated protein [Cytoskel 89.34
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 89.0
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 88.82
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 88.31
PF1036392 DUF2435: Protein of unknown function (DUF2435) 88.2
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 87.19
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 87.1
KOG2956516 consensus CLIP-associating protein [General functi 86.89
KOG4224550 consensus Armadillo repeat protein VAC8 required f 86.67
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 85.92
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 85.44
PF1036392 DUF2435: Protein of unknown function (DUF2435) 85.37
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 84.39
COG1413335 FOG: HEAT repeat [Energy production and conversion 84.36
TIGR02270410 conserved hypothetical protein. Members are found 84.25
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 84.07
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 83.65
KOG2149393 consensus Uncharacterized conserved protein [Funct 83.55
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 82.56
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 82.16
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 81.86
PF14750 1049 INTS2: Integrator complex subunit 2 81.54
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 81.37
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 81.12
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 80.92
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 80.6
KOG0414 1251 consensus Chromosome condensation complex Condensi 80.58
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=5.5e-129  Score=1018.05  Aligned_cols=436  Identities=48%  Similarity=0.763  Sum_probs=407.1

Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhccCCCC-chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHHHH
Q 010666            1 MLSDSSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGA   79 (504)
Q Consensus         1 mLsDpn~eVR~~ae~lL~~FLkeIk~~~~v-D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~   79 (504)
                      ||+|++++||..|+++|++||+||+.+|.. |+++|+++|+.|+++++|++|..|++||+||+.++|.++++|+|+|+.+
T Consensus       216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~  295 (675)
T KOG0212|consen  216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA  295 (675)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh
Confidence            899999999999999999999999988865 9999999999999999999999999999999999999999999999999


Q ss_pred             HcccccCCch-HHHHHHHHHHHHHHHhhcCC--CCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhchhhhhhch
Q 010666           80 ILPCISDKEE-KIRVVARETNEELRAIKADP--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL  156 (504)
Q Consensus        80 lLp~Lsd~~~-eIR~~A~~~N~~Ll~li~~~--~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~P~~~l~~~  156 (504)
                      +|||++|.++ .|++.|..+|..+++++...  ++.+||++++++|+++++++.++||+|||+|+++|+.++|++++.|.
T Consensus       296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~  375 (675)
T KOG0212|consen  296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN  375 (675)
T ss_pred             cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc
Confidence            9999999988 59999999999999999865  34499999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHHHHHHHHHhhccccchhhhhhHHHHHHHHhhcCChHHHHHHH
Q 010666          157 NDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYREL  234 (504)
Q Consensus       157 ~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~~fm~~LL~lF~~dr~LLe~Rg~lIIRqLC~~L~aE~Iy~~L  234 (504)
                      +.+|++||++|||+||+||.++|+|+|.||.  +..++.+|...|+++|+.|+++|+.||++||||||..|+||+||+++
T Consensus       376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~  455 (675)
T KOG0212|consen  376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSI  455 (675)
T ss_pred             cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHH
Confidence            9999999999999999999999999999994  45578999999999999999999999999999999999999999999


Q ss_pred             HHhhccccChHHHHHHHHHHHHHhcCchhHHHHHHHHHhhcCCcchhHHHHHHHHHhccChHHHHHHHHHHhhHHHHHHH
Q 010666          235 STILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAV  314 (504)
Q Consensus       235 a~iL~~~~Dl~F~~~mVq~Ln~iLLTs~El~~lR~~L~~~l~~~~~~~lF~~L~~sWchn~vs~lsLcLl~q~Ye~A~~l  314 (504)
                      |+||+.|+|++|||+|||+||+||+|||||++||++||+ +.+.+++++|+|||++|||||||++|||||||||+|||++
T Consensus       456 a~ILe~e~nl~FAstMV~~Ln~iLlTStELf~LR~~Lk~-lsn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~l  534 (675)
T KOG0212|consen  456 ADILEREENLKFASTMVQALNTILLTSTELFQLRNKLKD-LSNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDL  534 (675)
T ss_pred             HHHHhccccchHHHHHHHHHHhhhcccHHHHHHHHHHHh-ccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 7999999999999999999999999999999999999999


Q ss_pred             HHHhhccccchHHHHHHHHHHHHhhchhhHHHHHHhcCCCCChhHHHHHHHHhhhccCcchhhHHHHhhhcccCCccccc
Q 010666          315 IQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQQSAAFKILRTRLKTVPSFSFNG  394 (504)
Q Consensus       315 i~~~~~~eitv~~L~qiD~LVqLlESPiF~~LRLqLLep~~~p~L~k~LyglLMlLPQ~s~af~~L~~RL~~v~~~~~~~  394 (504)
                      +|.||++|+||++|+|+||||||+|||||||||||||||.+||||.||||||||+||| |+||.||++||+|||++....
T Consensus       535 iq~fa~~eitvd~L~elDKLVqLiEsPIFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ-S~AF~tL~~RLqcvp~~~~~~  613 (675)
T KOG0212|consen  535 IQLFADVEITVDFLVELDKLVQLIESPIFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ-SSAFQTLRHRLQCVPNPVGNQ  613 (675)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHhcchHHHHHHHHhccccCchHHHHHHHHHHHccc-HHHHHHHHHHHhcCCchhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999 999999999999999985432


Q ss_pred             hhhhccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010666          395 EQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQL  462 (504)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ll~~F~~vq~~~~~~~~~~~~~  462 (504)
                      ..  +...+.|+                     ..+.+..+|+|+||++||++||++|+..+ .||..
T Consensus       614 ~~--~~~~~~p~---------------------s~~~~~~~idf~~LlqhFkavq~~h~~~r-~~R~~  657 (675)
T KOG0212|consen  614 TI--DAREAVPF---------------------SQKADSPGIDFAELLQHFKAVQNKHLEQR-EQRSG  657 (675)
T ss_pred             ch--hhhccCCc---------------------ccccCCCCCChHHHHHHHHHHHHHHHHHH-HHHhc
Confidence            11  11111111                     11344578999999999999999998744 44444

>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF14750 INTS2: Integrator complex subunit 2 Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query504
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-04
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 9e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 69.9 bits (170), Expect = 1e-12
 Identities = 93/508 (18%), Positives = 168/508 (33%), Gaps = 108/508 (21%)

Query: 10  RQQADSALWEFLQEIKNSPSVD-YGRMA----EILVQRAASPDEFTRLTA--ITWINEFV 62
           R Q    L + L E++ + +V   G +       +        +        I W+N   
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--- 188

Query: 63  KLG----GDQLVPYYADILGAILPCI---SDKEEKIRVVARETNEELRAIKADP------ 109
            L      + ++     +L  I P     SD    I++       ELR +          
Sbjct: 189 -LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 110 -----------ADGFDVG-PILSIATRQLS-----SEWEATRIEALHWISTLLNRHRTEV 152
                       + F++   IL + TR        S    T I   H   TL      EV
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTL---TPDEV 303

Query: 153 LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSL--- 209
              L    D   + L  P  EV+       + IA+ ++               DN     
Sbjct: 304 KSLLLKYLDCRPQDL--PR-EVLTTNPRRLSIIAESIRDGLA---------TWDNWKHVN 351

Query: 210 LEKRGALIIRRLCVLLDAE--RVYRELSTILEGEADLDFACTMVQALNLI---LLTSSEL 264
            +K   +I   L VL  AE  +++  LS +    A +         L+LI   ++ S  +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHI-----PTILLSLIWFDVIKSDVM 405

Query: 265 SELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQ----TYHHASAVIQSLVE 320
             +  L K SLV    K+  +S+ +         I L L  +       H     +S+V+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPS---------IYLELKVKLENEYALH-----RSIVD 451

Query: 321 EDLNVKFLVQLDKLIRLLETPIFAYL--RLQLLEPGRYTWLLKALYGLLMLLPQQ----S 374
                K     D +   L+   ++++   L+ +E      L + ++     L Q+    S
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 375 AAFKILRTRLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHG 434
            A+    + L T+    F    I    +   Y ++++++     F    + N  + S + 
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAI---LDFLPKIEENL-ICSKY- 564

Query: 435 GINFASRLQQFEQMQHQHRIHGKAQAQL 462
                + L +   M     I  +A  Q+
Sbjct: 565 -----TDLLRIALMAEDEAIFEEAHKQV 587
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.36
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.31
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.24
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.13
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.09
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.98
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 98.96
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.94
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.93
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 98.9
1qgr_A876 Protein (importin beta subunit); transport recepto 98.88
1qgr_A876 Protein (importin beta subunit); transport recepto 98.86
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.82
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.71
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.66
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.66
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.63
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.58
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.56
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 98.55
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.54
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.52
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 98.51
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.47
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.46
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 98.46
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.44
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.42
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.42
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.41
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.4
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 98.36
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.35
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 98.34
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 98.31
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.3
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.27
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.24
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 98.18
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 98.16
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.15
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.13
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 98.11
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.03
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 98.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 97.94
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 97.9
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.85
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 97.85
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 97.78
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.58
2x19_B963 Importin-13; nuclear transport, protein transport; 97.48
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.34
2x1g_F971 Cadmus; transport protein, developmental protein, 97.33
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.33
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.32
2x1g_F971 Cadmus; transport protein, developmental protein, 97.21
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.15
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.15
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.94
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 96.92
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 96.79
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.77
2x19_B 963 Importin-13; nuclear transport, protein transport; 96.56
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 96.54
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 96.45
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 96.35
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 96.28
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 96.27
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.13
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 95.79
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 95.72
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 95.38
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.32
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 95.21
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.0
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 94.97
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 94.91
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 94.76
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 94.67
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 94.66
3grl_A 651 General vesicular transport factor P115; vesicle t 94.5
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 94.47
3nmz_A458 APC variant protein; protein-protein complex, arma 94.41
2db0_A253 253AA long hypothetical protein; heat repeats, hel 94.37
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 94.24
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 93.92
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 93.7
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 93.43
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 92.63
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 92.26
2db0_A253 253AA long hypothetical protein; heat repeats, hel 92.03
3nmz_A458 APC variant protein; protein-protein complex, arma 91.83
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 91.49
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 91.28
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 91.03
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 90.13
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 89.94
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 89.75
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 87.74
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 87.17
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 87.13
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 86.83
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 85.06
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 83.01
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 82.9
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 82.37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
Probab=99.36  E-value=1.9e-11  Score=117.36  Aligned_cols=188  Identities=16%  Similarity=0.190  Sum_probs=162.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhcCCccccccHHHHHHHH
Q 010666            2 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI   80 (504)
Q Consensus         2 LsDpn~eVR~~ae~lL~~FLkeIk~~~~vD~~~iI~ILv~~l~-s~e~~iRltaL~WI~efl~i~~~~llpylp~iL~~l   80 (504)
                      +.|.+-..|.+|-..|..+++.-.....-++.++++.|...+. .++..+|..++.=+..+..-.+..+-+|.+.++..+
T Consensus        24 l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~l  103 (242)
T 2qk2_A           24 LEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSL  103 (242)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred             hccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5688889999999999999887433223568999999999995 899999999999999999888888999999999999


Q ss_pred             cccccCCchHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhc-hhh-hhhchhH
Q 010666           81 LPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH-RTE-VLHFLND  158 (504)
Q Consensus        81 Lp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d~~~iv~vL~~~L~s~~e~TRlaaL~WL~~L~~k~-P~~-~l~~~~~  158 (504)
                      +.++.|+.+.||+.|..+...++..       ..++.+++.+...+.+.+..+|..++.||..+...+ |.. +.++++.
T Consensus       104 l~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~  176 (242)
T 2qk2_A          104 LEKFKEKKPNVVTALREAIDAIYAS-------TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKL  176 (242)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTT-------SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence            9999999999999999998887663       347899999999999999999999999999998887 553 5678999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHHHHH
Q 010666          159 IFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLV  196 (504)
Q Consensus       159 lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~~fm  196 (504)
                      +.|.|++.|.|+..+|...+.+.+..++.  +++.|..++
T Consensus       177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l  216 (242)
T 2qk2_A          177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL  216 (242)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            99999999999999999999999999873  333444433
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 504
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-09
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-07
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-04
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 40/215 (18%), Positives = 64/215 (29%), Gaps = 22/215 (10%)

Query: 1    MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE 60
              S  S E++  A  AL           SV         V +  +     +   +  + E
Sbjct: 861  AFSSPSEEVKSAASYALGSI--------SVGNLPEYLPFVLQEITSQPKRQYLLLHSLKE 912

Query: 61   FVK-LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPIL 119
             +       L PY  +I   +L      EE  R V  E   +L  I        D   +L
Sbjct: 913  IISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI--------DPETLL 964

Query: 120  SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 179
                  L S     R   +  +   ++ H   +   L +     LK L DP   V  + L
Sbjct: 965  PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVAL 1024

Query: 180  EVHACIAKD-----LQHFRQLVVFLVHNFRVDNSL 209
                  A +           ++  L +  +V   L
Sbjct: 1025 VTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKEL 1059
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query504
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.87
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.83
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.75
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.73
d1b3ua_588 Constant regulatory domain of protein phosphatase 98.7
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.69
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.55
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.47
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.35
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.33
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.25
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.11
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.06
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.97
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.96
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.93
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.93
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.91
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.9
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.88
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 97.86
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.68
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.66
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.11
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.08
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.05
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 96.68
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.57
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.35
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 96.25
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 95.92
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 94.27
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 91.36
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.35
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 84.73
d2b6ca1213 Hypothetical protein EF3068 {Enterococcus faecalis 83.38
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=7.9e-08  Score=106.83  Aligned_cols=254  Identities=14%  Similarity=0.197  Sum_probs=183.8

Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhccCC-CC---chHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcCCccccccHHHHH
Q 010666            2 LSDSSHEIRQQADSALWEFLQEIKNSP-SV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADIL   77 (504)
Q Consensus         2 LsDpn~eVR~~ae~lL~~FLkeIk~~~-~v---D~~~iI~ILv~~l~s~e~~iRltaL~WI~efl~i~~~~llpylp~iL   77 (504)
                      +.||++++|-||-   .+|++.+++.. ..   ...++++.|+..+..+++++|-.|++.+..|+...+..   .++.++
T Consensus        12 ~~~~D~d~R~ma~---~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~---~~~~l~   85 (1207)
T d1u6gc_          12 MTSSDKDFRFMAT---NDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIV   85 (1207)
T ss_dssp             TTCSSHHHHHHHH---HHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHHHHH
T ss_pred             cCCCCHhHHHHHH---HHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh---hHHHHH
Confidence            5799999999884   66777776432 22   37899999999999999999999999999998887764   457788


Q ss_pred             HHHcccccCCchHHHHHHHHHHHHHHHhhcCCCCCCC-----hHhHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhhchhh
Q 010666           78 GAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-----VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTE  151 (504)
Q Consensus        78 ~~lLp~Lsd~~~eIR~~A~~~N~~Ll~li~~~~~~~d-----~~~iv~vL~~~L~-s~~e~TRlaaL~WL~~L~~k~P~~  151 (504)
                      ..++..+.+++.+.|..+..+...+...+......-.     ...+++.+..... ..+...|..|++-+..+..+.|..
T Consensus        86 ~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~  165 (1207)
T d1u6gc_          86 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL  165 (1207)
T ss_dssp             HHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHh
Confidence            8888888888989999999888887777654332222     2334455555554 456778999999999999999999


Q ss_pred             hhhchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--chhhHHHHHHHHHhhccccchhhhhhHHH-HHHHHh----hc
Q 010666          152 VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGAL-IIRRLC----VL  224 (504)
Q Consensus       152 ~l~~~~~lfp~LLksLSD~sdeVv~~~L~LLa~Is~--~~~~F~~fm~~LL~lF~~dr~LLe~Rg~l-IIRqLC----~~  224 (504)
                      +.++.+.+++.+++.|+|+...|...++..++.++.  ++..|..++..+++.+..+..--..|+.+ .+-.+|    ..
T Consensus       166 l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~  245 (1207)
T d1u6gc_         166 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR  245 (1207)
T ss_dssp             CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh
Confidence            999999999999999999999999999999999983  56677888888888776542211222221 333344    33


Q ss_pred             CCh--HHHHHHHHHhhccccChHHHHHHHHHHHHHhcCch
Q 010666          225 LDA--ERVYRELSTILEGEADLDFACTMVQALNLILLTSS  262 (504)
Q Consensus       225 L~a--E~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTs~  262 (504)
                      +++  +.++..+-..+..+ |-+.-....+.+..+.-..+
T Consensus       246 ~~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         246 IGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             GTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhCh
Confidence            333  56777777777653 33444456677777765544
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure