Citrus Sinensis ID: 010686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500----
Protein Sequence
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Secondary Structure (PSIPRED)
cccccccccccccHHHHccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHccccccccHHcHHHHHHHHHHccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccEEccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHcccEEcccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccEEEEEccccccccccccEEEEEEcccHHHcccccccccccEcccccccccccccccccccccccccccccccccccccccEccccccccccccEcHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHccccHHHHHHHHHHcccHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHcccHHHHcHHHHHHHHHHccccHHHHHHccHHHcccHHHHccHHHHHHHHcccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msllclhsvfsspatilhshslvqtrpntprFVVLSTHSnakilktnrksrygqtlslydddseeegedddddddegkeddwladdddfaeieeydvngskyrsqkgvnkskssrrspvkgcgvgsfrsgrslqgAQEQLDIrnrrntiknsfddtyynskdvdqrgkvmtrNATENRYQRLSEEIELDEKWLPLLDYLstfglkesHFIQMYERhmpslqinVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISlgipnskigqiiaatpslfsySVENSLKPTVRYLVEEVGinekslgkvvqlspQVLVQRIDISWNTRCIFLskelgaprddVVKMVTkhpqllhysiddgllpriNFLRSIGMRNSDILKVLRSLTQVLSLslednlkpkYTYLINELHNEVQSLTKYPMYLslsldqrirpRHRFLVSlkkapkgpfplslfiptdecfcqkwagTTVDKYLAFRQKLLLKDFAKKYERRG
Flexible Loop (DISEMBL)
MSLLCLHSVFSSPATilhshslvqtrpNTPRFVVLSthsnakilktnrksrygqtlslydddseeegedddddddegkeddwladdddFAEIEeydvngskyrsqkgvnkskssrrspvkgcgvgsfrsgrslqgaqeqldirnrrntiknsfddtyynskdvdqrgkvmtrnatenryQRLSeeieldekwLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLsvgvkqrdvrRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGInekslgkvvqlspQVLVQRIDISWNTRCIFLSkelgaprdDVVKMVTKHPQLlhysiddgllpRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFakkyerrg
Low Complexity Region (SEG)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYdddseeegedddddddegkeddwladdddFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Disordered region (IsUnstruct)
***LCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHS***I*******************************************************************************************************************************************SEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFA*******
Disordered Region (DISOPRED)
***L***SVFSSPATI***************FVVLST********************************************WLADDDDFAEIEEY********************************************************SFDDTYYNSKDVDQRG**********************EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLL***********
Disordered Region (DISEMBL)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLY*******************EDDWLADDDDFAEIEEYDVNGSK********************CGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Disordered Region (DISPRO)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQT************************DDWLADDDDFAEIEEYDVNGSK****K*V*************************************************YNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	504	2.2.26 [Sep-21-2011]
Q6P6Q6	409	mTERF domain-containing p	yes	no	0.494	0.608	0.255	3e-08
Q96E29	417	mTERF domain-containing p	yes	no	0.496	0.599	0.245	1e-06
Q5ZJC8	405	mTERF domain-containing p	yes	no	0.424	0.528	0.249	2e-06
Q8R3J4	412	mTERF domain-containing p	yes	no	0.482	0.589	0.246	9e-06

>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus norvegicus GN=Mterfd1 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 29/278 (10%)

Query: 229 ERLEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQ 282
           E L+ L+ +GV      K  DV  +LLR         E +++  + FL  LG+ ++++G 
Sbjct: 146 ETLQKLVQLGVDLSKIEKHPDVANLLLR------LNFEKDIKQILLFLKDLGLEDNQLGP 199

Query: 283 IIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTR 339
            +    ++FS  +EN LK  V YL +    ++  +  +V+ +P +L   V+R+D     R
Sbjct: 200 FLTKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIACMVKNAPFLLSFSVERLD----NR 253

Query: 340 CIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQ 399
             F  KEL         +V + P+LL  S++        +   +G ++++I  ++  + +
Sbjct: 254 LGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMVTKIPK 313

Query: 400 VLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---P 456
           +L+ + +  L   + Y+ N ++     + K+P   +  +  +I+ RH FL  L KA   P
Sbjct: 314 MLTAN-KRKLTETFDYVHNVMNIPHHIIVKFPQVFNTRV-FKIKERHLFLAYLGKAQYDP 371

Query: 457 KGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 491
             P  +SL  F+   DE FC++ A  +V+ +  F + L
Sbjct: 372 AKPNYVSLDKFVSFPDEVFCKEIAKASVNDFEKFLKTL 409

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.
Rattus norvegicus (taxid: 10116)

>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MTERFD1 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)

Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 154 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 213

Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 214 AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 267

Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 268 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 326

Query: 406 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 458
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 327 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAK 381

Query: 459 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 382 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 417

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Homo sapiens (taxid: 9606)

>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus GN=MTERFD1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 51/265 (19%)

Query: 231 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL 290
           L +L  VG++   +   L + P IL   +E  LE+ VA+L S    N++I Q+++  P L
Sbjct: 180 LLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFGNAEITQMVSRAPYL 238

Query: 291 FSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRID-ISWNTRCIFLSKELGA 349
             +SVE  L   + +   E+G++ K    +V   P++L  +++ +  N +      E G 
Sbjct: 239 LLFSVER-LDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLEPVKENLQVC--QVEFGF 295

Query: 350 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 409
            R++V ++  K P++L  S                                     +  L
Sbjct: 296 ERNEVQQIAFKTPKILTAS-------------------------------------KKRL 318

Query: 410 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKGPFPLSL-- 464
           +  + YL N +      LT++P   +  L  RI+ RH FL+ L +A   P  P  +SL  
Sbjct: 319 RQTFDYLHNIMGIPHNMLTRFPQVFNSKL-LRIKERHMFLIFLGRAQYDPTKPSYISLDQ 377

Query: 465 --FIPTDECFCQKWAGTTVDKYLAF 487
              +P DE FC + A  ++  +  F
Sbjct: 378 LVSLP-DEVFCTEIAKASMQDFEKF 401

Binds promoter DNA and regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Gallus gallus (taxid: 9031)

>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mterfd1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 37/280 (13%)

Query: 231 LEYLLSVGV------KQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQII 284
           L+ L+ +GV      K  D   +LLR    L++  E +++  + FL  LG+ ++++G  +
Sbjct: 151 LQKLVQLGVDLSKIEKHPDAANLLLR----LDF--EKHIKQILLFLKDLGLEDNQLGPFL 204

Query: 285 AATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCI 341
               ++FS  +EN LK  V YL +    ++  + ++V+ +P +L   V+R+D     R  
Sbjct: 205 TKNYAIFSEDLEN-LKTRVAYL-QSKNFSKTDIARMVKNAPFLLSFSVERLD----NRLG 258

Query: 342 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVL 401
           F  KEL         +V + P+LL  S++        +   +G ++++I  ++  + ++L
Sbjct: 259 FFQKELELNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKML 318

Query: 402 SLSLEDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA-- 455
           + +     K K T + + +HN +      + K+P   +  +  +I+ RH FL  L +A  
Sbjct: 319 TAN-----KRKLTEIFDYVHNVMNIPHHIIVKFPQLFNTRVF-KIKERHLFLAYLGRAQY 372

Query: 456 -PKGPFPLSL--FIP-TDECFCQKWAGTTVDKYLAFRQKL 491
            P  P  +SL  F+   D+ FC++ A  +++ +  F + L
Sbjct: 373 DPAKPNYVSLDKFVSFPDKIFCKEIAKASLNDFEKFLKTL 412

Binds promoter DNA (By similarity). Regulates initiation of transcription. Required for normal mitochondrial transcription, and for normal assembly of mitochondrial respiratory complexes. Required for normal mitochondrial function.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
225460761	514	PREDICTED: uncharacterized protein LOC10	0.916	0.898	0.713	0.0
449467351	521	PREDICTED: uncharacterized protein LOC10	0.938	0.907	0.711	0.0
255576320	508	conserved hypothetical protein [Ricinus	0.892	0.885	0.714	0.0
224056433	448	predicted protein [Populus trichocarpa]	0.861	0.968	0.706	0.0
356499427	488	PREDICTED: uncharacterized protein LOC10	0.928	0.959	0.658	1e-173
15240542	496	Mitochondrial transcription termination	0.934	0.949	0.646	1e-167
297793029	493	mitochondrial transcription termination	0.930	0.951	0.648	1e-167
297737540	480	unnamed protein product [Vitis vinifera]	0.805	0.845	0.696	1e-163
357494843	528	mTERF domain-containing protein [Medicag	0.894	0.854	0.616	1e-162
115473031	503	Os07g0583200 [Oryza sativa Japonica Grou	0.761	0.763	0.641	1e-145

>gi|225460761|ref|XP_002276224.1| PREDICTED: uncharacterized protein LOC100260706 [Vitis vinifera]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/481 (71%), Positives = 394/481 (81%), Gaps = 19/481 (3%)

Query: 29  TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKED-DWLADDD 87
           T  F VLSTHSN +ILK+NR+SRYGQ LS YD D           D+ G ED DW  DD+
Sbjct: 46  TSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTD-----------DNAGDEDGDWFFDDE 94

Query: 88  DFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRN 147
           D +E EE+D +  K+ SQKG +  + SRR   +   + S +S  S   ++ +LD++N +N
Sbjct: 95  D-SETEEFDADRKKFNSQKGNDTRQGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNGKN 153

Query: 148 TIKNSFDDTYYNSKDVDQR-----GKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTF 202
           TI +S+  T+  S+D D       GK+  R +TEN+Y RLSEEI+LDEKW PLLDYLSTF
Sbjct: 154 TIGSSYH-TFNKSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLSTF 212

Query: 203 GLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 262
           GLKESHFIQMYERHMPSLQIN CSA+ERLEYL SVGVK RD++RI+LRQPQILEYTVENN
Sbjct: 213 GLKESHFIQMYERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVENN 272

Query: 263 LESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ 322
           L+SHVAFL+ LGIP+S+IG +IAA PSLFSYSVENSLKPTVRYL+EEVGI +  LGKVVQ
Sbjct: 273 LKSHVAFLVGLGIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKVVQ 332

Query: 323 LSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS 382
           LSPQ+LVQRID SWNTR  FLS+ELGAPRD +VKMVTKHPQLLHYSI+DG LPRINFLRS
Sbjct: 333 LSPQILVQRIDNSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFLRS 392

Query: 383 IGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRI 442
           IGMRNSDILKVL +LTQVLSLSLEDNLKPKY YL+NEL NEV SLTKYPMYLSLSLDQRI
Sbjct: 393 IGMRNSDILKVLTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQRI 452

Query: 443 RPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYER 502
           RPRHRFLV LKKAPKGPFPLS F+PTDECFCQ+WAGT++D YLAFRQ+LLLKDFAKKYE+
Sbjct: 453 RPRHRFLVYLKKAPKGPFPLSSFVPTDECFCQQWAGTSLDSYLAFRQRLLLKDFAKKYEK 512

Query: 503 R 503
           R
Sbjct: 513 R 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467351|ref|XP_004151387.1| PREDICTED: uncharacterized protein LOC101207692 [Cucumis sativus] gi|449517569|ref|XP_004165818.1| PREDICTED: uncharacterized protein LOC101227066 [Cucumis sativus]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/481 (71%), Positives = 399/481 (82%), Gaps = 8/481 (1%)

Query: 28  NTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDD 87
           N PRFVV STHS+A ILK  R+SR+G+TLS +D D  E+G D D+   +G +DD   D+ 
Sbjct: 43  NVPRFVVRSTHSSAAILKPKRRSRFGRTLSPFDSD--EDGYDVDEFSSDGDDDDAWPDNG 100

Query: 88  DFAEIEEYDVNGSKYRSQKGVNKSKSSR---RSPVKGCGVGSFRSGRSLQGAQEQLDIRN 144
           DF+++E YD    + + Q     + S R   R P +  G+ S   G+S +     LD ++
Sbjct: 101 DFSDVE-YDAKRKRAKLQSKTRNNNSQRDNVRHPRESRGIKSSNDGKSFKVKSNHLDFQD 159

Query: 145 RRN-TIKNSFD-DTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTF 202
             N T+K+ F+ D    S +  ++GKVMT+ + E R+ RL+EEI+LDEKW PLL+YL+TF
Sbjct: 160 ITNDTVKHDFNIDEEVCSTNTGRKGKVMTKKSMEIRFPRLAEEIDLDEKWFPLLNYLTTF 219

Query: 203 GLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 262
           GLKESHF+QMYERHMPSLQINV SA+ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN
Sbjct: 220 GLKESHFLQMYERHMPSLQINVYSAQERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 279

Query: 263 LESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ 322
           L+SHVAFL+SLGIP S++GQIIAA PSLFSYSVENSLKPTVRYLVEEVGI EK LGKVVQ
Sbjct: 280 LKSHVAFLLSLGIPTSRVGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIQEKDLGKVVQ 339

Query: 323 LSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS 382
           LSPQ+LVQRID SWNTR +FLSKE+GAPRD+VVKMVTKHPQLLHYSI+DGLLPRINFLRS
Sbjct: 340 LSPQILVQRIDTSWNTRYMFLSKEIGAPRDNVVKMVTKHPQLLHYSINDGLLPRINFLRS 399

Query: 383 IGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRI 442
           IGMRNS+ILKVL SLTQV SLSLEDNLKPKY YLINEL NEV+SLTKYPMYLSLSLDQRI
Sbjct: 400 IGMRNSEILKVLTSLTQVFSLSLEDNLKPKYMYLINELRNEVKSLTKYPMYLSLSLDQRI 459

Query: 443 RPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYER 502
           RPRHRFLVSLKKAPKGPFPLS F+PTDECFC++WA T++DKYL FR++LLLK+FA+KYER
Sbjct: 460 RPRHRFLVSLKKAPKGPFPLSSFVPTDECFCEQWAETSLDKYLEFRKRLLLKEFAEKYER 519

Query: 503 R 503
           R
Sbjct: 520 R 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576320|ref|XP_002529053.1| conserved hypothetical protein [Ricinus communis] gi|223531533|gb|EEF33364.1| conserved hypothetical protein [Ricinus communis]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/483 (71%), Positives = 400/483 (82%), Gaps = 33/483 (6%)

Query: 31  RFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFA 90
           + VVLSTHSNAKILK+NRKSR+GQTLS Y  D +EE E+DDDDD++  +  W +DD+ FA
Sbjct: 50  KLVVLSTHSNAKILKSNRKSRFGQTLSPYASDDDEEEEEDDDDDNDSDKS-WFSDDE-FA 107

Query: 91  EIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIK 150
           E  ++ VNG +++ QK +++                       QG + QLD +  RNT +
Sbjct: 108 EPVDFKVNGKRFKLQKKISER----------------------QGGRRQLDAKIGRNTQE 145

Query: 151 NSFDDTYYNSKD---------VDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLST 201
                 +Y++K+         VD++ ++M++  TENRY++LSEEI+LD +WLPLLDYL T
Sbjct: 146 KRIIGNFYHTKNKTKQPDSMHVDRKERLMSKEPTENRYEKLSEEIDLDNRWLPLLDYLCT 205

Query: 202 FGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVEN 261
           FGLKES FIQMYERHMPSLQINV SA+ERLEYLLSVGVK RD+RRILLRQPQILEYTV+N
Sbjct: 206 FGLKESDFIQMYERHMPSLQINVSSAQERLEYLLSVGVKHRDIRRILLRQPQILEYTVDN 265

Query: 262 NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVV 321
           NL+SHVAFL SLGIPNS+IGQIIA TPSLFSYSV+NSLKPTVRYLVEE+GINEK++GKVV
Sbjct: 266 NLKSHVAFLSSLGIPNSRIGQIIAVTPSLFSYSVQNSLKPTVRYLVEELGINEKNIGKVV 325

Query: 322 QLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR 381
           QLSPQ+LVQRIDISWNTR IFLSKELGA ++ VVKMVTKHPQLLHYSIDDG +PRINFLR
Sbjct: 326 QLSPQILVQRIDISWNTRYIFLSKELGASKESVVKMVTKHPQLLHYSIDDGFVPRINFLR 385

Query: 382 SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQR 441
           SIGMRNSDILKVL SLTQVLSLSLEDNLKPKY YLINEL NEVQSLTKYPMYLSLSLDQR
Sbjct: 386 SIGMRNSDILKVLTSLTQVLSLSLEDNLKPKYKYLINELRNEVQSLTKYPMYLSLSLDQR 445

Query: 442 IRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYE 501
           IRPRH+FLV+LKKAPKGPFPLS F+PTDECFCQ+WAGT+V+KYLAFRQ+LLL  FAKKYE
Sbjct: 446 IRPRHKFLVALKKAPKGPFPLSSFVPTDECFCQQWAGTSVEKYLAFRQQLLLNKFAKKYE 505

Query: 502 RRG 504
           R G
Sbjct: 506 RLG 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056433|ref|XP_002298854.1| predicted protein [Populus trichocarpa] gi|222846112|gb|EEE83659.1| predicted protein [Populus trichocarpa]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/481 (70%), Positives = 383/481 (79%), Gaps = 47/481 (9%)

Query: 34  VLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIE 93
           VLSTHSNAKIL   RKSRYG T SLYD D                 DDWL DD+ FAE  
Sbjct: 5   VLSTHSNAKILNPKRKSRYGHTFSLYDTDI--------------GLDDWLLDDE-FAEPV 49

Query: 94  EYDVNGSK-YRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNS 152
           +++V+G K   SQK     K+S R                 +G Q   + R  +NT + S
Sbjct: 50  DFEVDGKKRVNSQK-----KTSTR-----------------EGGQRLFNSRTSKNTREKS 87

Query: 153 FDDTYYNSK---------DVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFG 203
               +Y +K         D++ +GK+MT  +TE+RY +LSEEI+LDEKWLPLLDYLSTFG
Sbjct: 88  MVGNFYGTKTRTKEADSSDINGQGKLMTGKSTEDRYPKLSEEIDLDEKWLPLLDYLSTFG 147

Query: 204 LKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNL 263
           LKESHFIQ+YERHMPSLQINVCSARERLEYL S+GVK RD++RILLRQPQILEYTVE+NL
Sbjct: 148 LKESHFIQIYERHMPSLQINVCSARERLEYLQSIGVKHRDIKRILLRQPQILEYTVESNL 207

Query: 264 ESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQL 323
           +SH AFLI LGIPNS+IGQIIAA PSLFSYSVENSLKPTVRY+VEEVGI+EK++GKVVQL
Sbjct: 208 KSHTAFLIGLGIPNSRIGQIIAAAPSLFSYSVENSLKPTVRYMVEEVGIDEKNIGKVVQL 267

Query: 324 SPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSI 383
           SPQ+LVQRID+SWNTR +FLS+ELGA RD VVKMVTKHPQLLHYSIDDG +PRINFLRSI
Sbjct: 268 SPQILVQRIDVSWNTRYLFLSRELGASRDSVVKMVTKHPQLLHYSIDDGFIPRINFLRSI 327

Query: 384 GMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIR 443
           GM N DILKVL SLTQVLSLSLEDNLKPKY YLINEL NEVQSLTKYP YLSLSLDQRIR
Sbjct: 328 GMHNGDILKVLTSLTQVLSLSLEDNLKPKYKYLINELRNEVQSLTKYPTYLSLSLDQRIR 387

Query: 444 PRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERR 503
           PRHRFLV+LKKAPKGPFPLS F+PTDE FCQ+WAGT+VDKYLAFRQ+LLLK+FAKKYE+R
Sbjct: 388 PRHRFLVALKKAPKGPFPLSSFVPTDESFCQQWAGTSVDKYLAFRQQLLLKEFAKKYEKR 447

Query: 504 G 504
           G
Sbjct: 448 G 448

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499427|ref|XP_003518542.1| PREDICTED: uncharacterized protein LOC100809638 [Glycine max]

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 328/498 (65%), Positives = 385/498 (77%), Gaps = 30/498 (6%)

Query: 10  FSSPATILHSHSLVQTR----PNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEE 65
           FS+P++      +++ R     +    V L+ HSN +ILK+NRKS+YG+ L  YD D E 
Sbjct: 16  FSTPSSFRSQFWILERRRLGSASLKNLVKLAAHSNPRILKSNRKSKYGEALLFYDSDEEM 75

Query: 66  EGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVG 125
           + +  DDD+D+         D++F+E    DVN +K    K    +K   R      G+ 
Sbjct: 76  DDDVSDDDEDDDW-----LSDEEFSEPANLDVNNNKRFKSKT---TKGKDRQQEWEWGLR 127

Query: 126 SFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEE 185
           SF + +S++  + +     +RN                 + GK  +RN  + +Y RLSEE
Sbjct: 128 SFDNKQSIRLPRSERVASLQRN-----------------ESGK-HSRNVKDKKYPRLSEE 169

Query: 186 IELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVR 245
           I LD KWLPLLDYLSTFG+KESHF+QMYER M SLQINVCSA+ERLEYLLSVGVKQ DVR
Sbjct: 170 IPLDVKWLPLLDYLSTFGMKESHFVQMYERRMQSLQINVCSAQERLEYLLSVGVKQSDVR 229

Query: 246 RILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY 305
           RILLRQPQILEYTVENNL+S VAFL  LGIPNS+IGQIIAA PSLFSYSVENSLKPTVRY
Sbjct: 230 RILLRQPQILEYTVENNLKSRVAFLRGLGIPNSRIGQIIAAAPSLFSYSVENSLKPTVRY 289

Query: 306 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLL 365
           L+EEVGI EK LGKV+QLSPQ+LVQRIDISWNTR +FL+KELGAPRD +VKMVTKHPQLL
Sbjct: 290 LIEEVGIKEKDLGKVIQLSPQILVQRIDISWNTRSMFLTKELGAPRDSIVKMVTKHPQLL 349

Query: 366 HYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQ 425
           HYSIDDGLLPRINFLRSIGM+NSDI+KVL SLTQVLSLSLE+NLKPKY YL+NEL+NEVQ
Sbjct: 350 HYSIDDGLLPRINFLRSIGMKNSDIVKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQ 409

Query: 426 SLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYL 485
           SLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPL   +PTDECFCQ+WAGT++D+YL
Sbjct: 410 SLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDRYL 469

Query: 486 AFRQKLLLKDFAKKYERR 503
           AFRQ+LLLK FA+KYER+
Sbjct: 470 AFRQRLLLKKFAEKYERK 487

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240542|ref|NP_200369.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] gi|9758592|dbj|BAB09225.1| unnamed protein product [Arabidopsis thaliana] gi|17065230|gb|AAL32769.1| Unknown protein [Arabidopsis thaliana] gi|23197866|gb|AAN15460.1| Unknown protein [Arabidopsis thaliana] gi|332009269|gb|AED96652.1| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 326/504 (64%), Positives = 382/504 (75%), Gaps = 33/504 (6%)

Query: 3   LLCLHSVFSSPATILHSHSLVQTRPN--TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYD 60
           L  L S   SPAT          RP+  T  FVV   HSN KI+   +KSRYGQTLS YD
Sbjct: 24  LFVLGSDKCSPAT---------RRPSRKTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYD 74

Query: 61  DDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVK 120
            D +++ +DDDDDDD          +DDFAE+ EY+    K +S K     KS ++  VK
Sbjct: 75  SDEDDDDDDDDDDDDW-------LLNDDFAEVTEYE--KKKPKSHKQTIAKKSVKKGIVK 125

Query: 121 GCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQ 180
                        +  ++ LD+        N+  +    S  +D RGK+ +R   E  Y 
Sbjct: 126 P---------EESETDEDDLDL----GISPNATSEKKKESWRLDGRGKMSSRKYVEKLYP 172

Query: 181 RLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVK 240
           RL+EEI++D K +PLLDYLSTFGLKESHF+QMYERHMPSLQINV SA+ERL+YLLSVGVK
Sbjct: 173 RLAEEIDIDPKCVPLLDYLSTFGLKESHFVQMYERHMPSLQINVFSAQERLDYLLSVGVK 232

Query: 241 QRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLK 300
            RD++R+LLRQPQIL+YTVENNL++H++FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+
Sbjct: 233 HRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLR 292

Query: 301 PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTK 360
           PT+RYL+EEVGI E  +GKVVQLSPQ+LVQR+DI+WNTR +FLSKELGAPRD VVKMV K
Sbjct: 293 PTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKK 352

Query: 361 HPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL 420
           HPQLLHYSIDDG LPRINFLRSIGM NSDILKVL SLTQVLSLSLEDNLKPKY YL+NEL
Sbjct: 353 HPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNEL 412

Query: 421 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTT 480
           +NEV  LTKYPMYLSLSLDQRIRPRHRFLV LKK  KGPFPLS  +P DE FCQ+WAGT+
Sbjct: 413 NNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESFCQQWAGTS 472

Query: 481 VDKYLAFRQKLLLKDFAKKYERRG 504
           VD YLAFRQ+LLLK+FA KY++RG
Sbjct: 473 VDTYLAFRQRLLLKEFANKYDKRG 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793029|ref|XP_002864399.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297310234|gb|EFH40658.1| mitochondrial transcription termination factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  594 bits (1531), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 325/501 (64%), Positives = 374/501 (74%), Gaps = 32/501 (6%)

Query: 3   LLCLHSVFSSPATILHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDD 62
           L  L S   SPAT   S         T  FVV   HSN KI+   +KSRYGQTLS YD D
Sbjct: 24  LFVLGSDKCSPATRRRSR-------KTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYDSD 76

Query: 63  SEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGC 122
            +EE +DD+DDD           +DDFAE+ EY+    K + Q    K            
Sbjct: 77  EDEELDDDEDDDW--------LLNDDFAEVTEYEKKKPKSQKQTMAKKGVKKGIV----- 123

Query: 123 GVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRL 182
              ++      +  ++ LDI   RN            S  +D RGKV +R   E  Y RL
Sbjct: 124 --KNWEKPEESETDEDDLDIGISRNR----------ESWRLDGRGKVSSRKYVEKLYPRL 171

Query: 183 SEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQR 242
           SEEI++D KW+PLLDYLSTFGLKESHF+QMYERHMPSLQINV SA+ERL+YLLSVGVK R
Sbjct: 172 SEEIDIDPKWVPLLDYLSTFGLKESHFVQMYERHMPSLQINVLSAQERLDYLLSVGVKHR 231

Query: 243 DVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPT 302
           D++R+LLRQPQIL+YTVENNL++H++FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+PT
Sbjct: 232 DIKRMLLRQPQILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPT 291

Query: 303 VRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHP 362
           +RYL+EEVGI E  +GKVVQLSPQ+LVQR+DI+WNTR +FLSKELGAPRD VVKMV KHP
Sbjct: 292 IRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHP 351

Query: 363 QLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN 422
           QLLHYSIDDG LPRINFLRSIGM NSDILKVL SLTQVLSLSLEDNLKPKY YL+NEL+N
Sbjct: 352 QLLHYSIDDGFLPRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNN 411

Query: 423 EVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVD 482
           EV  LTKYPMYLSLSLDQRIRPRHRFLV LKK  KGPFPLS  +P DE FCQ+WAGT+VD
Sbjct: 412 EVHILTKYPMYLSLSLDQRIRPRHRFLVELKKVRKGPFPLSSLVPNDESFCQQWAGTSVD 471

Query: 483 KYLAFRQKLLLKDFAKKYERR 503
            YLAFRQ+LLLK+FA KY++R
Sbjct: 472 TYLAFRQRLLLKEFANKYDKR 492

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737540|emb|CBI26741.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/425 (69%), Positives = 341/425 (80%), Gaps = 19/425 (4%)

Query: 29  TPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKED-DWLADDD 87
           T  F VLSTHSN +ILK+NR+SRYGQ LS YD D           D+ G ED DW  DD+
Sbjct: 46  TSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTD-----------DNAGDEDGDWFFDDE 94

Query: 88  DFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRN 147
           D +E EE+D +  K+ SQKG +  + SRR   +   + S +S  S   ++ +LD++N +N
Sbjct: 95  D-SETEEFDADRKKFNSQKGNDTRQGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNGKN 153

Query: 148 TIKNSFDDTYYNSKDVDQR-----GKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTF 202
           TI +S+  T+  S+D D       GK+  R +TEN+Y RLSEEI+LDEKW PLLDYLSTF
Sbjct: 154 TIGSSYH-TFNKSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLSTF 212

Query: 203 GLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENN 262
           GLKESHFIQMYERHMPSLQIN CSA+ERLEYL SVGVK RD++RI+LRQPQILEYTVENN
Sbjct: 213 GLKESHFIQMYERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVENN 272

Query: 263 LESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQ 322
           L+SHVAFL+ LGIP+S+IG +IAA PSLFSYSVENSLKPTVRYL+EEVGI +  LGKVVQ
Sbjct: 273 LKSHVAFLVGLGIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKVVQ 332

Query: 323 LSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS 382
           LSPQ+LVQRID SWNTR  FLS+ELGAPRD +VKMVTKHPQLLHYSI+DG LPRINFLRS
Sbjct: 333 LSPQILVQRIDNSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFLRS 392

Query: 383 IGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRI 442
           IGMRNSDILKVL +LTQVLSLSLEDNLKPKY YL+NEL NEV SLTKYPMYLSLSLDQRI
Sbjct: 393 IGMRNSDILKVLTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQRI 452

Query: 443 RPRHR 447
           RPRHR
Sbjct: 453 RPRHR 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494843|ref|XP_003617710.1| mTERF domain-containing protein [Medicago truncatula] gi|355519045|gb|AET00669.1| mTERF domain-containing protein [Medicago truncatula]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 314/509 (61%), Positives = 374/509 (73%), Gaps = 58/509 (11%)

Query: 31  RFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDD--- 87
           +F VLS HSN KILKTNRKS YG+ LS YD D E E  D +DD+DE +++D   DDD   
Sbjct: 41  KFTVLSAHSNPKILKTNRKSTYGKFLSPYDSDDEIEEMDFEDDEDEDEDEDEDDDDDDDD 100

Query: 88  --------DFAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQ 139
                    FAE  + +    + +S+   ++ +       K  GV S  +G+S +  + Q
Sbjct: 101 DDEDDDDDGFAEPTDLNAKDKRLKSKTVPDRQQEKE----KEKGVRSLNNGQSKRLPKSQ 156

Query: 140 LDIRNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYL 199
                + N           NS           RN+ E +Y  LSEEI LDEKWLPLLDYL
Sbjct: 157 RIASLQEN-----------NSAK-------FRRNSMEKKYPELSEEILLDEKWLPLLDYL 198

Query: 200 STFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTV 259
           STFG+KES FIQ+YERHM S QINVCSA+ER++YL+S+GVK +D+RRILLRQPQILEYTV
Sbjct: 199 STFGIKESQFIQIYERHMSSFQINVCSAQERIDYLMSLGVKHKDIRRILLRQPQILEYTV 258

Query: 260 ENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGK 319
           ENNL++HVAFL+ LG+P++KIGQIIA+TPSLFSYSVE SLKPTVRYL+EEVGI EK LGK
Sbjct: 259 ENNLKTHVAFLMGLGVPSTKIGQIIASTPSLFSYSVEKSLKPTVRYLIEEVGIKEKDLGK 318

Query: 320 VVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINF 379
           V+QLSPQ+LVQRIDISWNTR +FL+KEL AP++ +VKMVTKHPQLLHYSIDDGLLPRINF
Sbjct: 319 VIQLSPQILVQRIDISWNTRLMFLNKELDAPKESIVKMVTKHPQLLHYSIDDGLLPRINF 378

Query: 380 LRSIGMRNSDILKVLRSLTQ-------------------------VLSLSLEDNLKPKYT 414
           LRSIGM+N+DILK+L SLTQ                         VLSLSLE NLKPKY 
Sbjct: 379 LRSIGMKNADILKILTSLTQVIFAFIFVILFSLCTKGTRKRKRCYVLSLSLEANLKPKYL 438

Query: 415 YLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQ 474
           YL+NELHNEVQ+LTKYPMYLSLSLDQRIRPRH+FLVSLKKAPKGPFPL   +PTDE FCQ
Sbjct: 439 YLVNELHNEVQTLTKYPMYLSLSLDQRIRPRHKFLVSLKKAPKGPFPLGSLVPTDESFCQ 498

Query: 475 KWAGTTVDKYLAFRQKLLLKDFAKKYERR 503
           +WAGTT+D+Y AFRQ+LLLK  A+KY+R+
Sbjct: 499 RWAGTTLDEYAAFRQRLLLKKLAEKYDRK 527

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115473031|ref|NP_001060114.1| Os07g0583200 [Oryza sativa Japonica Group] gi|27817836|dbj|BAC55604.1| unknown protein [Oryza sativa Japonica Group] gi|113611650|dbj|BAF22028.1| Os07g0583200 [Oryza sativa Japonica Group] gi|215701195|dbj|BAG92619.1| unnamed protein product [Oryza sativa Japonica Group] gi|222637347|gb|EEE67479.1| hypothetical protein OsJ_24896 [Oryza sativa Japonica Group]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 254/396 (64%), Positives = 320/396 (80%), Gaps = 12/396 (3%)

Query: 116 RSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNTIKNSFDDTYYNSK--------DVDQRG 167
           R+P+K  G       ++ +G Q +   R+R +T K   D  +  SK        D+D   
Sbjct: 106 RAPIKKPGREKPALKQNWEGRQPK--TRDRCDTSKK-VDALHAKSKASRSTGLVDIDNEV 162

Query: 168 KVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSA 227
           ++   + + + +Q+L EE + D+KWLPL+DYL TFGLKESHF  MYERHM   QI+  SA
Sbjct: 163 ELKNESISRSLFQKLQEEYDFDDKWLPLIDYLCTFGLKESHFTNMYERHMACFQISQASA 222

Query: 228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 287
            ERLE+LLSVGVK +D++R+L+RQPQILEYT+ +NL+SHVAFL+ +G+P+++IGQII+A 
Sbjct: 223 EERLEFLLSVGVKSKDMKRMLVRQPQILEYTL-SNLKSHVAFLVGIGVPSARIGQIISAA 281

Query: 288 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 347
           PS FSYSVE SLKPT+RYL+EEVGI E  +GKVVQLSPQ+LVQRID +W +R +FLSKEL
Sbjct: 282 PSFFSYSVEQSLKPTIRYLIEEVGIEESDVGKVVQLSPQILVQRIDSAWKSRFLFLSKEL 341

Query: 348 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED 407
           GAP+D++VKMVTKHPQLLHYSI+DG+LPRINFLRSIGMR++D+LKVL SLTQVLSLSLE+
Sbjct: 342 GAPKDNIVKMVTKHPQLLHYSIEDGILPRINFLRSIGMRDTDVLKVLTSLTQVLSLSLEE 401

Query: 408 NLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIP 467
           NLKPKY YL+N+L N+VQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLS F+P
Sbjct: 402 NLKPKYLYLVNDLKNDVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSSFVP 461

Query: 468 TDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERR 503
           TDE FC++WAGT+++KY  FRQ +LLK F++K  R+
Sbjct: 462 TDERFCKRWAGTSLEKYHTFRQSMLLKGFSEKTGRK 497

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	504
TAIR|locus:2162092	496	AT5G55580 "AT5G55580" [Arabido	0.795	0.808	0.689	3.9e-155
TAIR|locus:2056745	283	EMB93 "EMBRYO DEFECTIVE 93" [A	0.426	0.759	0.282	3.5e-23
TAIR|locus:2062328	303	AT2G34620 "AT2G34620" [Arabido	0.410	0.683	0.279	5.9e-22
TAIR|locus:2207420	591	AT1G78930 "AT1G78930" [Arabido	0.446	0.380	0.280	9.5e-22
TAIR|locus:2139394	541	BSM "AT4G02990" [Arabidopsis t	0.619	0.576	0.254	2.7e-21
TAIR|locus:2087926	274	AT3G18870 "AT3G18870" [Arabido	0.466	0.857	0.299	2.1e-20
TAIR|locus:2039240	333	EMB3114 "AT2G36000" [Arabidops	0.454	0.687	0.269	2.9e-19
TAIR|locus:505006461	493	MDA1 "AT4G14605" [Arabidopsis	0.537	0.549	0.257	3.3e-18
TAIR|locus:2051814	507	AT2G44020 "AT2G44020" [Arabido	0.482	0.479	0.262	7.1e-18
TAIR|locus:2049329	641	EMB2219 "embryo defective 2219	0.494	0.388	0.277	2.3e-17

TAIR|locus:2162092 AT5G55580 "AT5G55580" [Arabidopsis thaliana (taxid:3702)]

 Score = 1438 (511.3 bits), Expect = 3.9e-155, Sum P(2) = 3.9e-155
 Identities = 287/416 (68%), Positives = 335/416 (80%)

Query:    89 FAEIEEYDVNGSKYRSQKGVNKSKSSRRSPVKGCGVGSFRSGRSLQGAQEQLDIRNRRNT 148
             FAE+ EY+    K +S K     KS ++  VK             +  ++ LD+      
Sbjct:    96 FAEVTEYEKK--KPKSHKQTIAKKSVKKGIVKP---------EESETDEDDLDL----GI 140

Query:   149 IKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESH 208
               N+  +    S  +D RGK+ +R   E  Y RL+EEI++D K +PLLDYLSTFGLKESH
Sbjct:   141 SPNATSEKKKESWRLDGRGKMSSRKYVEKLYPRLAEEIDIDPKCVPLLDYLSTFGLKESH 200

Query:   209 FIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVA 268
             F+QMYERHMPSLQINV SA+ERL+YLLSVGVK RD++R+LLRQPQIL+YTVENNL++H++
Sbjct:   201 FVQMYERHMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHIS 260

Query:   269 FLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL 328
             FL+ LGIPNSKIGQI+AATPSLFSYSVENSL+PT+RYL+EEVGI E  +GKVVQLSPQ+L
Sbjct:   261 FLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKETDVGKVVQLSPQIL 320

Query:   329 VQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNS 388
             VQR+DI+WNTR +FLSKELGAPRD VVKMV KHPQLLHYSIDDG LPRINFLRSIGM NS
Sbjct:   321 VQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNS 380

Query:   389 DILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRF 448
             DILKVL SLTQVLSLSLEDNLKPKY YL+NEL+NEV  LTKYPMYLSLSLDQRIRPRHRF
Sbjct:   381 DILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRF 440

Query:   449 LVSLKKAPKGPFPLSLFIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKKYERRG 504
             LV LKK  KGPFPLS  +P DE FCQ+WAGT+VD YLAFRQ+LLLK+FA KY++RG
Sbjct:   441 LVELKKVRKGPFPLSSLVPNDESFCQQWAGTSVDTYLAFRQRLLLKEFANKYDKRG 496

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2056745 EMB93 "EMBRYO DEFECTIVE 93" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 3.5e-23, P = 3.5e-23
 Identities = 63/223 (28%), Positives = 119/223 (53%)

Query:   228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 287
             RE+L YL  + V   D  + L   P +    + +++ S    L S G+    +G+I+   
Sbjct:    33 REKLIYLQDLNV---DPHKALRVNPSLRSAPI-SSVVSVETLLSSTGLSRPAVGRILDMF 88

Query:   288 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 347
             P L +   E+ + P +R+L  E+ I+E+ + K +   P++L+  +D        FL K L
Sbjct:    89 PDLLTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFL-KTL 147

Query:   348 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRS-IGMRNSDILKVLRSLTQVLSLSLE 406
             G    D +   +++  LL  +++  L+P+I +L   +G    ++ K++     +L+ S++
Sbjct:   148 GFVGRDTI--TSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVD 205

Query:   407 DNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
             +NL PK  + I E+  +V+ L ++P Y S SL+++I+PRHR L
Sbjct:   206 NNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLL 248

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0071452 "cellular response to singlet oxygen" evidence=IGI

TAIR|locus:2062328 AT2G34620 "AT2G34620" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 5.9e-22, P = 5.9e-22
 Identities = 60/215 (27%), Positives = 120/215 (55%)

Query:   261 NNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKV 320
             ++++S + FL S GI  + + +I+   P + +  V   L P   +L  ++ + E +  +V
Sbjct:    85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRV 144

Query:   321 VQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL 380
             ++  P++L+  ++        +L + LG    D+  +  + P LL  S++  L+P++ FL
Sbjct:   145 IKKCPRLLISSVEDQLKPALFYLQR-LGLK--DLEALAYQDPILLVSSVEHTLIPKLRFL 201

Query:   381 RSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQ 440
              SIG    + + ++     + + S+E+N KPK  Y ++E+  ++++L ++P Y + SL++
Sbjct:   202 ESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEK 261

Query:   441 RIRPRHRFLVSLKKAPKGPFPLSLFIP-TDECFCQ 474
             RI+PRH  L S+++  +   PLSL +  TDE F Q
Sbjct:   262 RIKPRH--LESMERGLE--LPLSLMLKSTDEEFEQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2207420 AT1G78930 "AT1G78930" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 9.5e-22, P = 9.5e-22
 Identities = 65/232 (28%), Positives = 124/232 (53%)

Query:   218 PSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPN 277
             PS+Q N         +  S  V + D+   + R P +L  +  +N+E  V     LG+ +
Sbjct:   330 PSIQENYSHIGS---FFYSESVLKMDIDHAIRRWPLLLGCSA-SNMEMMVKEFDKLGVRD 385

Query:   278 SKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWN 337
              ++G++I   P L     +  LK  V +L E++G  ++ +G+++   P++    I+ +  
Sbjct:   386 KRMGKVIPKMPQLLLCKPQEFLK-VVCFL-EDLGFQKEIVGQILCRCPEIFGCSIEKTLQ 443

Query:   338 TRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSL 397
              + IFL++  G       +++ K+P+ L Y  D  +LPR+ +L  IG+   +I  ++R  
Sbjct:   444 KKLIFLTR-FGVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKF 502

Query:   398 TQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
             + +L  S++  L+PK+ +L+N +   V+ + +YP Y S SL++RI+PR R L
Sbjct:   503 SPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVL 554

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2139394 BSM "AT4G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 2.7e-21, P = 2.7e-21
 Identities = 83/326 (25%), Positives = 158/326 (48%)

Query:   163 VDQRGKVMTRNAT--E--NRY-QRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHM 217
             +D  GK+  R +T  E   RY Q L   + +D    P++ YL    +K S   ++ ER+ 
Sbjct:   183 LDYLGKLGVRKSTFTEFLRRYPQVLHSSVVID--LAPVVKYLQGLDIKPSDVPRVLERYP 240

Query:   218 PSLQINVCSARER-LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIP 276
               L   +       + YL+ +GV +R++  IL R P+IL   V   ++  V +L  LGIP
Sbjct:   241 EVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVARIIKPLVEYLEVLGIP 300

Query:   277 NSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISW 336
                  ++I   P +  + +++++KP V+ L ++  + E SL  ++   P+++   +    
Sbjct:   301 RLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSIIAQYPEIIGIDLKPKL 359

Query:   337 NTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRS 396
             +T+   L   +    +D+  ++ + PQ +  S +  +L  I+FL   G       +++  
Sbjct:   360 DTQRKLLCSAIHLNPEDLGSLIERMPQFVSLS-ESPMLKHIDFLTKCGFSIDQTREMVIG 418

Query:   397 LTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP 456
               QVL+L+L   +K  + Y   E+   +Q L  +P + +  L+  ++PRH+ ++  KK  
Sbjct:   419 CPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTVKPRHKKII--KKGI 475

Query:   457 KGPFPLSLFIPTDECFCQKWAGTTVD 482
             K      L   +DE F Q+ +  T+D
Sbjct:   476 KCSLAWMLNC-SDEKFEQRMSYDTID 500

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008380 "RNA splicing" evidence=IMP

GO:0009536 "plastid" evidence=IDA

GO:0009790 "embryo development" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0042793 "transcription from plastid promoter" evidence=IMP

GO:0042794 "rRNA transcription from plastid promoter" evidence=IMP

TAIR|locus:2087926 AT3G18870 "AT3G18870" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 76/254 (29%), Positives = 129/254 (50%)

Query:   226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 285
             S RE L +L S+G+  ++ R      P   + +V   + S V  L S GI +    +++ 
Sbjct:    35 SHRENLRHLSSLGIVPQNPRLA----PPANDLSV---ILSAVNLLKSKGISDEDFPRLVF 87

Query:   286 ATPSLFSYSVENS-LKPTVRYLVEEVGIN-EKSLGKVVQLSPQVLVQRIDISWNTRCIFL 343
               P LFS + + S L P   +L  E+G + E+S G +V   P +L   ++       ++L
Sbjct:    88 LCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNC-PNILFSDVEYCLRPTLVYL 146

Query:   344 SKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSL 403
              KELG    +       H  +L+  ++  L  ++ FL+SIG  + +  +V   +  +   
Sbjct:   147 -KELGVRNLNRASKTNAH--VLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAIFGY 202

Query:   404 SLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLS 463
             S+EDNL+PK+ +L+ ++  E++ L K+P Y + SL +RIRPRH  L   KK  +    LS
Sbjct:   203 SVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHWHLK--KKNVR--VSLS 258

Query:   464 -LFIPTDECFCQKW 476
              + +  D+ F  KW
Sbjct:   259 RMLMWGDQKFYSKW 272

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2039240 EMB3114 "AT2G36000" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.9e-19, P = 2.9e-19
 Identities = 67/249 (26%), Positives = 125/249 (50%)

Query:   226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS--LGIPNSKIGQI 283
             S  E+L YL S+G+   D   ++ R P +L  T  + +ES V ++ +  +        ++
Sbjct:    72 SIHEKLIYLDSLGI---DFLTLINRHPPLLS-TALSAVESVVDYMTTPPINFTLQDFRRL 127

Query:   284 IAATPSLFSYSVENSLKPTVRYLVEEVGINEK-SLGKVVQLSPQVLVQRIDISWNTRCIF 342
             ++  P L +  + +   P + +L+ EVG++    L + ++  P++L   +D        F
Sbjct:   128 VSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLYF 187

Query:   343 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLS 402
             L + +G      +    KH  LL  S+D+ L+PRI++   +G        + +   Q+ +
Sbjct:   188 LQR-IG------ILDPHKHTYLLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFN 240

Query:   403 LSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP-FP 461
              S+ +N +PK  YL+ E+  +V+ + ++P Y S SL+ RI+PRH        A KG  FP
Sbjct:   241 YSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEAC-----AAKGVRFP 295

Query:   462 LSLFIPTDE 470
             L + + T+E
Sbjct:   296 LPVMLKTNE 304

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:505006461 MDA1 "AT4G14605" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 73/284 (25%), Positives = 136/284 (47%)

Query:   171 TRNATENRYQR-LSEEIELDEKWL--PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSA 227
             T +A + R  R +S   ELD +    P   YL   GL     I+   R   +        
Sbjct:   172 TDSAADTRKLRAVSRVSELDTEGALRPQTLYLLDLGLNLEQ-IKTITRKFAAFPYYSLDG 230

Query:   228 RER--LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIA 285
             + +  +E+LL +G+ + D+  IL ++PQI   ++ +NL+  +AFL +LGI  ++  +II+
Sbjct:   231 KIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 290

Query:   286 ATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSK 345
               P++ +YS    L  TV +L  + G+ E+ +G+++   P ++   ++        +  +
Sbjct:   291 RFPAILTYS-RQKLTSTVEFL-SQTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYF-R 347

Query:   346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
              L     DV  ++ + PQ    SI+  L P   F    G    +I  ++     + + SL
Sbjct:   348 SLNV---DVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSL 404

Query:   406 EDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFL 449
             ++N+ PK+ Y    +      L K+P +   SL +RI+PR+  +
Sbjct:   405 KENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELV 447

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

TAIR|locus:2051814 AT2G44020 "AT2G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
 Identities = 66/251 (26%), Positives = 130/251 (51%)

Query:   233 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 292
             YL+S+GV  RD+  ++ + P +L   V   ++  V +LIS+G+P   + +++     +  
Sbjct:   222 YLVSIGVSPRDIGPMVTQYPYLLGMRVGTMIKPLVDYLISIGLPKKIVARMLEKRSYIVG 281

Query:   293 YSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 352
             Y++E ++KP V  L+   G+ ++ L  ++   PQ+L   +    +T+  F S +L    +
Sbjct:   282 YNLEETVKPNVDCLIS-FGVKKELLPLLIAQYPQILGLPVKAKMSTQQYFFSLKLKIDPE 340

Query:   353 DVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 412
                ++V K PQ++     + ++  I FL     +  DI K++    Q+L   +E  +K  
Sbjct:   341 GFARVVEKMPQIVSLK-QNVIMKPIEFLLGRAFQVEDIAKMVVRCPQILCSRVE-LMKNS 398

Query:   413 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIP-TDEC 471
             Y +   E+   ++ L +YP Y + SL+ RI+PR++ L S  K  +    L+ F+  +D+ 
Sbjct:   399 YYFYKTEMGRPMKELVEYPEYFTYSLESRIKPRYQKLQS--KGIRSS--LNWFLNCSDQR 454

Query:   472 FCQKWAGTTVD 482
             F ++  G  +D
Sbjct:   455 FEERLQGNFID 465

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049329 EMB2219 "embryo defective 2219" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 77/277 (27%), Positives = 135/277 (48%)

Query:   196 LDYLSTFGL--KESHFIQMYERHMPSLQINVCSARER----LEYLLSVGVKQRDVRRILL 249
             ++YL  FGL  +E   +  Y+ H+       CS  ER    ++Y   +G+ +  ++RIL+
Sbjct:   356 INYLKEFGLSTEEVGRLLAYKPHLMG-----CSIEERWKPLVKYFYYLGIPKEGMKRILV 410

Query:   250 RQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE 309
              +P +    +E  +   V FL  +GIPN  IG ++   PSL + S+   ++P V +L+  
Sbjct:   411 VKPILYCIDLEKTIAPKVRFLQEMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTR 470

Query:   310 VGINEKSLGKVVQLSPQVLVQRID--ISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHY 367
              G+ +K +GKV+ + P +L   I   +  N R  ++S  LG     + +M+   P LL Y
Sbjct:   471 AGVTQKDIGKVIAMDPALLGCSIGTKLEPNMR-YYIS--LGIRFYQLGEMIADFPMLLRY 527

Query:   368 SIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSL 427
             ++D+ L P+  +LR   +R    L+ L    +  S SLE  + P++T ++    N V   
Sbjct:   528 NVDN-LRPKYRYLRRTMIRP---LQDLIEFPRFFSYSLERRIIPRHTIMVE---NRVNFK 580

Query:   428 TKYPMYLS-LSLDQRIRP----RHRFLVSLKKAPKGP 459
              +Y +  +    ++R+R     R RF   L      P
Sbjct:   581 LRYMLACTDEEFERRVRDKVERRERFEAGLDSEDSQP 617

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	504
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	9e-33
pfam02536	345	pfam02536, mTERF, mTERF	7e-21
pfam02536	345	pfam02536, mTERF, mTERF	5e-17
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	2e-16
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	3e-07
pfam02536	345	pfam02536, mTERF, mTERF	9e-05
pfam12253	76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	3e-04
PLN03196	487	PLN03196, PLN03196, MOC1-like protein; Provisional	4e-04
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
smart00733	31	smart00733, Mterf, Mitochondrial termination facto	0.002
pfam05285	317	pfam05285, SDA1, SDA1	0.003
pfam09538	104	pfam09538, FYDLN_acid, Protein of unknown function	0.004

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score =  130 bits (328), Expect = 9e-33
 Identities = 71/252 (28%), Positives = 135/252 (53%), Gaps = 10/252 (3%)

Query: 233 YLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFS 292
           YL+S+GV  RD+  +L R P+IL   V NN++  V +L SLG+P   + +I+   P +  
Sbjct: 202 YLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILG 261

Query: 293 YSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD 352
           + +E ++KP V  L+ E G+ +++L  V+   P +L   +      +  +L+ +L    +
Sbjct: 262 FDLEETVKPNVECLL-EFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPE 320

Query: 353 DVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPK 412
           D  +++ K PQ++  +  +  L  + FLR  G    D+ K++    Q+L+L+LE  +KP 
Sbjct: 321 DFGRVIEKLPQIVSLN-RNVALKHVEFLRGRGFSAQDVAKMVVRCPQILALNLE-IMKPS 378

Query: 413 YTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG-PFPLSLFIP-TDE 470
             +   E+   ++ L ++P Y +  L+ RI+PR+  +       KG    L+ F+  +D+
Sbjct: 379 LEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAK-----KGIKCSLAWFLNCSDD 433

Query: 471 CFCQKWAGTTVD 482
            F Q+ +G  ++
Sbjct: 434 KFEQRMSGDFIE 445

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 93.3 bits (232), Expect = 7e-21
 Identities = 68/288 (23%), Positives = 129/288 (44%), Gaps = 20/288 (6%)

Query: 194 PLLDYLSTFGLKESHFIQMYERHMPSL--QINVCSARERLEYLLSVGVKQRDVRRILLRQ 251
            + D+L    + +       E++  SL    N    R  +  L  +GV  + +  +L+ +
Sbjct: 71  SVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIR-NVSVLRELGVPPKLLFSLLISR 129

Query: 252 PQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVG 311
           P+      +   E  +  ++ +G   +   ++IA  P L  YS + ++KP V +L     
Sbjct: 130 PR--PVCGKEVFEESLKKVVEMGFDPTTFKRVIAKRPRLLLYSSDKTIKPNVEFL----- 182

Query: 312 INEKSLGKVVQLSPQVLVQR---IDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYS 368
              KSLG  V+    +L +    +  S   +             + + ++ K PQ + YS
Sbjct: 183 ---KSLGFSVEDVWAILKKCPELLGSSEKKKLQTQEILKTCGLLEFLSVIKKMPQFVSYS 239

Query: 369 IDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLT 428
            +  +L +I FL  +G    +I K+++   Q+L LS+E  +K K  +L+ E++  ++ L 
Sbjct: 240 -EQKILNKIEFLLGLGFSREEIAKMVKRCPQLLGLSVE-KVKKKTEFLVKEMNWPLKELV 297

Query: 429 KYPMYLSLSLDQRIRPR-HRFLVSLKKAPKGPFPLSLFIP-TDECFCQ 474
           ++P     SL++RI+PR +     + K       LS  +  TDE F Q
Sbjct: 298 EFPQVFGYSLEKRIKPRCNVVKALMSKGKSILPSLSSMLKCTDEEFLQ 345

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 81.7 bits (202), Expect = 5e-17
 Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 5/223 (2%)

Query: 230 RLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPS 289
           +L++L S G  + ++ +I+   P+IL      ++ S   FL  + + +      +   P 
Sbjct: 36  KLQFLQSRGASKSELTKIVSTVPKILGKKGVKSISSVYDFLKKIIVADLDKSSKLEKYPE 95

Query: 290 LFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGA 349
                   +    V  L E +G+  K L  ++   P+ +  +         +    E+G 
Sbjct: 96  SLPQGNNGNKIRNVSVLRE-LGVPPKLLFSLLISRPRPVCGKEVFE---ESLKKVVEMGF 151

Query: 350 PRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNL 409
                 +++ K P+LL YS D  + P + FL+S+G    D+  +L+   ++L  S +  L
Sbjct: 152 DPTTFKRVIAKRPRLLLYSSDKTIKPNVEFLKSLGFSVEDVWAILKKCPELLGSSEKKKL 211

Query: 410 KPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSL 452
           + +       L   +  + K P ++S S +Q+I  +  FL+ L
Sbjct: 212 QTQEILKTCGLLEFLSVIKKMPQFVSYS-EQKILNKIEFLLGL 253

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 53/227 (23%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAAT 287
           RER+E+L  +G+   D    +   P +L  +V+ N+   + +L  LG+  S + +++   
Sbjct: 93  RERVEFLHKLGLTIED----INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRY 148

Query: 288 PSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL 347
           P +   SV   L P V+YL + + +  + + +V++  P++L  +++ + +T   +L   +
Sbjct: 149 PQVLHASVVVDLAPVVKYL-QGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVS-I 206

Query: 348 GAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED 407
           G    D+  M+T+ P++L   + + + P++++L S+G+    + ++L     +L   LE+
Sbjct: 207 GVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEE 266

Query: 408 NLKPKYTYLI--NELHNEVQSL-TKYPMYLSLSLDQRIRPRHRFLVS 451
            +KP    L+        + S+  +YP  L L L  ++  +  +L S
Sbjct: 267 TVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTS 313

Length = 487

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
           +LG  R  + +++ ++PQ+LH S+   L P + +L+ + ++  DI +VL    ++L   L
Sbjct: 133 KLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKL 192

Query: 406 EDNLKPKYTYL--INELHNEVQS-LTKYPMYLSLSLDQRIRPRHRFLVSL 452
           E  +     YL  I     ++   LT++P  L + +   I+P+  +L SL
Sbjct: 193 EGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESL 242

Length = 487

>gnl|CDD|217090 pfam02536, mTERF, mTERF

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)

Query: 343 LSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLS 402
           L + LG     +  ++  +P LL    +  L P++ FL+S G   S++ K++ ++ ++L 
Sbjct: 3   LLRSLGFTDSLISTIIRDYPLLLGADAEKNLQPKLQFLQSRGASKSELTKIVSTVPKILG 62

Query: 403 LSLEDNLKPKYTYL---INELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP 459
                ++   Y +L   I    ++   L KYP  L    +         L  L   PK  
Sbjct: 63  KKGVKSISSVYDFLKKIIVADLDKSSKLEKYPESLPQGNNGNKIRNVSVLRELGVPPKLL 122

Query: 460 FPL 462
           F L
Sbjct: 123 FSL 125

This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers. Length = 345

>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 6/37 (16%)

Query: 59 YDDDS------EEEGEDDDDDDDEGKEDDWLADDDDF 89
          YD DS      EEEGED + +D+E +E+D   D D F
Sbjct: 40 YDYDSDAEWEEEEEGEDLESEDEEDEEEDDDDDMDGF 76

The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A. The A domain is uniquely required for the progression of S phase in mouse cells, independent of its ability to promote histone deposition but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints. Length = 76

>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 339 RCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLT 398
           R  FL K LG   +D+     ++P +L  S+   ++P +++L  +G+  S + ++LR   
Sbjct: 95  RVEFLHK-LGLTIEDI----NEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYP 149

Query: 399 QVLSLSLEDNLKPKYTYLIN---ELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA 455
           QVL  S+  +L P   YL     +  +  + L +YP  L   L+  +     +LVS+  A
Sbjct: 150 QVLHASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVA 209

Query: 456 PK 457
           P+
Sbjct: 210 PR 211

Length = 487

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 60 DDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
          +D+ +E+    DDDDD+  +DD    DDD  ++++ D
Sbjct: 58 EDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDD 94

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

>gnl|CDD|197848 smart00733, Mterf, Mitochondrial termination factor repeats

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 356 KMVTKHPQLLHYSIDDGLLPRINFLRSIGMR 386
           K+V K PQ+L YS +  L P++ FL+ +G  
Sbjct: 2   KIVKKFPQILGYS-EKKLKPKVEFLKELGFS 31

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins. Length = 31

>gnl|CDD|218538 pfam05285, SDA1, SDA1

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 48  RKSRYGQTLSLYDDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
           +K    Q L   DDD EEE  + ++D+D   E +W+  + D  EIE  D
Sbjct: 84  KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESD-KEIESSD 131

This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317

>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 60  DDDSEEEGEDDDDDDDEGKEDDWLADDDDFAEIEEYD 96
            DD +++ +DDD  D +  + D L DDDD    ++ D
Sbjct: 68  LDDDDDDDDDDDLPDLDDDDVD-LDDDDDDFLEDDDD 103

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	504
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
PLN03196	487	MOC1-like protein; Provisional	100.0
PF02536	345	mTERF: mTERF; InterPro: IPR003690 This family curr	100.0
KOG1267	413	consensus Mitochondrial transcription termination	99.92
KOG1267	413	consensus Mitochondrial transcription termination	99.83
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.33
smart00733	31	Mterf Mitochondrial termination factor repeats. Hu	96.29
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	95.45
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	95.25
PF09026	101	CENP-B_dimeris: Centromere protein B dimerisation	94.23
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	93.2
KOG0943	3015	consensus Predicted ubiquitin-protein ligase/hyper	93.05
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	92.42
KOG0943	3015	consensus Predicted ubiquitin-protein ligase/hyper	92.31
PF08595	149	RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904	90.96
PF12253	77	CAF1A: Chromatin assembly factor 1 subunit A; Inte	87.67
PF03115	787	Astro_capsid: Astrovirus capsid protein precursor;	87.21
PF03066	149	Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301	86.49
PTZ00415	2849	transmission-blocking target antigen s230; Provisi	85.42
KOG1824	1233	consensus TATA-binding protein-interacting protein	81.97

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=4.3e-53  Score=454.22  Aligned_cols=323  Identities=24%  Similarity=0.469  Sum_probs=263.7

Q ss_pred             hhhhhhhhhhhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCcccc
Q 010686          143 RNRRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQI  222 (504)
Q Consensus       143 ~~~~~~v~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~  222 (504)
                      +....+|+++|..+|+++.++..+         +.+||+++ ..+++.++.|+++||+++|++.++|.+++.++|.+|.+
T Consensus       121 ~~~l~Pvl~fL~~lG~s~~~i~~l---------I~~~P~lL-~~sve~~L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~  190 (487)
T PLN03196        121 KKNMIPVLDYLEKLGVTRSSLPEL---------LRRYPQVL-HASVVVDLAPVVKYLQGLDVKRQDIPRVLERYPELLGF  190 (487)
T ss_pred             hhhhHHHHHHHHHcCCCHHHHHHH---------HHhCCcee-cccHHHHHHHHHHHHHHcCCCHHHHHHHHHhCchhhcC
Confidence            445566777777777777777663         56677777 67777777777777777777777777777777777777


Q ss_pred             Ccc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhH
Q 010686          223 NVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKP  301 (504)
Q Consensus       223 ~~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p  301 (504)
                      +++ .+.++++||.++|++.+++++++.++|+||+++++++++|+++||+++|++.++|+++|.++|++|+++++++++|
T Consensus       191 ~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp  270 (487)
T PLN03196        191 KLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKP  270 (487)
T ss_pred             CHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHH
Confidence            766 6777777777777777777777777777777777777778888887778877778888888888887777767788


Q ss_pred             HHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH
Q 010686          302 TVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR  381 (504)
Q Consensus       302 ~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~  381 (504)
                      ++.+|. ++|++++.+.++++++|.+++.+++.++.+++.|+.+.+|++++++..+++++|++++++ +++|.+|++||+
T Consensus       271 ~v~~L~-elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~s~e~i~~~v~k~P~il~lS-e~kl~~kvefL~  348 (487)
T PLN03196        271 NVECLL-EFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLN-RNVALKHVEFLR  348 (487)
T ss_pred             HHHHHH-HcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCCCHHHHHHHHHhcchhhccc-HHHHHHHHHHHH
Confidence            888876 778888778888888888887777767777788887788888888888888888888888 678999999999


Q ss_pred             HhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHHHHHHhhcCCCCCCC
Q 010686          382 SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFP  461 (504)
Q Consensus       382 ~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~~~k~~~~  461 (504)
                      ++||+.++|..||.++|++|++|. ++|++|++||+++||+++++|++||++|+||||+||+|||++|+.-| +   .++
T Consensus       349 ~~Gls~edI~~mv~k~P~lL~~S~-~~l~~k~dFlvneMg~~~~~Iv~fP~~LsySLEkRI~PR~~~L~~kG-l---~~s  423 (487)
T PLN03196        349 GRGFSAQDVAKMVVRCPQILALNL-EIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVAKKG-I---KCS  423 (487)
T ss_pred             HcCCCHHHHHHHHHhCCceeeccH-HHHHHHHHHHHHHhCCCHHHHHhChHHhccChhhhhHHHHHHHHHcC-C---CCC
Confidence            999999999999999999999995 99999999999999999999999999999999999999999987532 1   457


Q ss_pred             cccc-cCCHHHHHHHhcCCChH
Q 010686          462 LSLF-IPTDECFCQKWAGTTVD  482 (504)
Q Consensus       462 Ls~L-~~sd~~F~~~~~~~s~e  482 (504)
                      |+++ .+||+.|+++|+..++|
T Consensus       424 L~~~L~~sd~~F~~r~v~~y~e  445 (487)
T PLN03196        424 LAWFLNCSDDKFEQRMSGDFIE  445 (487)
T ss_pred             HHHHhccCHHHHHHHHhhhccc
Confidence            8775 69999999999776655

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=3.2e-47  Score=393.23  Aligned_cols=308  Identities=31%  Similarity=0.588  Sum_probs=256.9

Q ss_pred             hhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCcc-CHHHH
Q 010686          152 SFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARER  230 (504)
Q Consensus       152 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~  230 (504)
                      .++++||++.||..+         ++++|.++ .++.++++.|+++||.+.|++.+++++++.++|.++..+.+ ++.+.
T Consensus         3 ~~~~~gf~~~~i~~~---------i~~~P~~l-~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~   72 (345)
T PF02536_consen    3 LLKNHGFSDSQISKL---------IRRYPRLL-LCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPV   72 (345)
T ss_dssp             HHHHHHHHTS-HHHH---------HH-H-HHH-HT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHH
T ss_pred             HHHHcCCCHHHHHHH---------HHhCCceE-EecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHH
Confidence            578899999999994         78899999 89999999999999999999999999999999999999954 89999


Q ss_pred             HHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHh
Q 010686          231 LEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEV  310 (504)
Q Consensus       231 l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~l  310 (504)
                      ++||+++|++++++.+++.++|++|..+.+.++.++++||.++|++.+.+.+++..+|.++...  ..+.+.++++. ++
T Consensus        73 ~~~L~~~~~s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l~-~l  149 (345)
T PF02536_consen   73 FDFLKSIGLSDEDIVKVLKRYPRILSFSVEENLSPNVAFLRSLGVPPSQIISLLISRPPLFLSS--EKIKERVEFLK-EL  149 (345)
T ss_dssp             HHHHTTTSS-HHHHHHHHHH-SHHHHS---HHHHHHHHHHHHTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHHC-CC
T ss_pred             HHHHHHHcCCHHHHHHHHHhcchhhccchHhhhhhhhhHHhhcCCcHHHHHHHHHhcCccccch--hHHHHHHHHHH-Hh
Confidence            9999999999999999999999999998877999999999999999998999999999877665  46999999996 89


Q ss_pred             CCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhcccccccccccc-------------------
Q 010686          311 GINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDD-------------------  371 (504)
Q Consensus       311 Gv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~-------------------  371 (504)
                      |++++++.+++..+|.++....+..|+++++|| +++|++.+++.+++.++|.++..+.+.                   
T Consensus       150 G~~~~~~~~vi~~~P~~l~~~~~~~~~~~v~~L-~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~  228 (345)
T PF02536_consen  150 GFDPEKIGRVIAKNPRLLLSDSESELKPKVEFL-RSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERV  228 (345)
T ss_dssp             TSSHHHHCCCHHHHHHHHCGSCCCCCHHHHHHH-HHCTT-GHHHHHHHHHTTTGGGCGCHC-------------------
T ss_pred             CCCchhhcccccccchhhccccHHHHHHHHHHH-HhhcccchhhhHHhhcccceeccccccccccccccccccccccccc
Confidence            999999999999999888888888899999999 699999999999999999999988765                   


Q ss_pred             -------------chHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCc
Q 010686          372 -------------GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSL  438 (504)
Q Consensus       372 -------------~L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SL  438 (504)
                                   ++.++++||+++||+.+++++|+.++|+||++|. ++|++|++||+++||+++++|+++|++|+||+
T Consensus       229 i~~~p~il~~~~~~l~~~i~~L~~lG~s~~ei~~mv~~~P~iL~~s~-e~l~~k~~fl~~~m~~~~~~i~~~P~~l~~sL  307 (345)
T PF02536_consen  229 IKKFPQILSLSEEKLKPKIEFLQSLGFSEEEIAKMVRRFPQILSYSI-EKLKPKFEFLVKEMGLPLEEIVEFPQYLSYSL  307 (345)
T ss_dssp             --------THHHHHHHHHHHHHHTTT--HHHHHHHHHHSGGGGGS-H-HHHHHHHHHHHHCCT--HHHHHHSCHHHCS-H
T ss_pred             ccccccccccchHhHHHHHHHHHHhcCcHHHHHHHHHhCcchhhcch-hhhhHHHHHHHHHhCcCHHHHhhCCceeEech
Confidence                         6899999999999999999999999999999996 56999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHhhcCC-CCCCCcccc-cCCHHHHHH
Q 010686          439 DQRIRPRHRFLVSLKKAP-KGPFPLSLF-IPTDECFCQ  474 (504)
Q Consensus       439 ekrI~PR~~fL~~L~~~~-k~~~~Ls~L-~~sd~~F~~  474 (504)
                      |+||+|||+++++|+... +...++.++ .+||++|++
T Consensus       308 e~ri~PR~~~~~~l~~~g~~~~~sl~~~l~~s~~~F~~  345 (345)
T PF02536_consen  308 EKRIKPRYEVLKVLKSKGLIINPSLSSMLSCSDEEFLK  345 (345)
T ss_dssp             HHHHHHHHHHHHTT--TTTGGGGGS-HHHHHHHHHHT-
T ss_pred             hhhhhhHHHHHHHHHHCcCCCCCCHHHHhhccHHHhcC
Confidence            999999999999997532 234577764 699999974

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>PLN03196 MOC1-like protein; Provisional

Probab=100.00  E-value=1.7e-42  Score=372.32  Aligned_cols=288  Identities=22%  Similarity=0.439  Sum_probs=273.5

Q ss_pred             hhhhhhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCcc-C
Q 010686          148 TIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-S  226 (504)
Q Consensus       148 ~v~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~  226 (504)
                      .++++|+.+||+..||..             ||+++ .+++++++.|+++||.++|++.++|++++.++|.+|.++++ +
T Consensus        94 ~~l~~L~s~G~~~~~i~~-------------~P~iL-~~~v~~~l~Pvl~fL~~lG~s~~~i~~lI~~~P~lL~~sve~~  159 (487)
T PLN03196         94 ERVEFLHKLGLTIEDINE-------------YPLVL-GCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVD  159 (487)
T ss_pred             HHHHHHHHcCCChHHhcc-------------CcHHh-hcCHhhhhHHHHHHHHHcCCCHHHHHHHHHhCCceecccHHHH
Confidence            466899999999998863             79999 99999999999999999999999999999999999999987 8


Q ss_pred             HHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHH
Q 010686          227 ARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYL  306 (504)
Q Consensus       227 l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL  306 (504)
                      +.|+++||+++|++.+++.+++.++|++|++++++++.++++||.++|++.++|+++|.++|++|+++++++++|+++||
T Consensus       160 L~P~v~fL~~lGvs~~~i~~~l~r~P~LL~~~~e~~l~p~v~fL~~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL  239 (487)
T PLN03196        160 LAPVVKYLQGLDVKRQDIPRVLERYPELLGFKLEGTMSTSVAYLVSIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYL  239 (487)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHhCchhhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH-HhcC
Q 010686          307 VEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGM  385 (504)
Q Consensus       307 ~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~  385 (504)
                      + ++|++.+++.+++.++|++|+++++.++++++.+| .++|++++.+..+++++|.++++++++++.++++||. ++||
T Consensus       240 ~-~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L-~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~  317 (487)
T PLN03196        240 E-SLGLPRLAVARILEKRPYILGFDLEETVKPNVECL-LEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKI  317 (487)
T ss_pred             H-HcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHH-HHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCC
Confidence            7 79999999999999999999999988899999999 5999999999999999999999999999999999995 8999


Q ss_pred             ChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHH----hhcCceeccCcccchHHHHHHHHHhhc
Q 010686          386 RNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSL----TKYPMYLSLSLDQRIRPRHRFLVSLKK  454 (504)
Q Consensus       386 s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I----~k~P~lL~~SLekrI~PR~~fL~~L~~  454 (504)
                      +.+++..++.++|+++++| ++++.+|++||.+ +|++.++|    .++|++|+||++ .|+++++||..-.+
T Consensus       318 s~e~i~~~v~k~P~il~lS-e~kl~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~-~l~~k~dFlvneMg  387 (487)
T PLN03196        318 DPEDFGRVIEKLPQIVSLN-RNVALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLE-IMKPSLEFFKKEMK  387 (487)
T ss_pred             CHHHHHHHHHhcchhhccc-HHHHHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHH-HHHHHHHHHHHHhC
Confidence            9999999999999999999 7899999999986 99997655    899999999995 89999999997543

>PF02536 mTERF: mTERF; InterPro: IPR003690 This family currently contains one sequence of known function human mitochondrial transcription termination factor (mTERF), a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions []

Probab=100.00  E-value=1.4e-33  Score=291.64  Aligned_cols=250  Identities=31%  Similarity=0.560  Sum_probs=210.8

Q ss_pred             HHHHhCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCC
Q 010686          197 DYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGI  275 (504)
Q Consensus       197 ~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGl  275 (504)
                      ++|+++||++++|.++++++|.++.++++ ++.|+++||.++|++..++.+++.++|.+|..++++++.|+++||+++|+
T Consensus         2 ~~~~~~gf~~~~i~~~i~~~P~~l~~~~~~~l~pk~~fl~s~G~s~~~i~~il~~~P~il~~s~~~~i~p~~~~L~~~~~   81 (345)
T PF02536_consen    2 DLLKNHGFSDSQISKLIRRYPRLLLCDPEKTLLPKLEFLRSLGFSSSDIAKILSKNPQILSRSLEKNIIPVFDFLKSIGL   81 (345)
T ss_dssp             HHHHHHHHHTS-HHHHHH-H-HHHHT-SS-HHHHHHHHHHHTT--HHHHHHHHHH-GGGGGS--HHHHHHHHHHHTTTSS
T ss_pred             hHHHHcCCCHHHHHHHHHhCCceEEecCccchhHHHHHHHHCCCCHHHHHHHHHhChHHHhccchhhHHHHHHHHHHHcC
Confidence            68999999999999999999999999987 89999999999999999999999999999999988999999999999999


Q ss_pred             CchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHH
Q 010686          276 PNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVV  355 (504)
Q Consensus       276 s~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~  355 (504)
                      +++++++++.++|++|..+.+.++.+++.||+ ++|++++.+..++...|..+...  ..+++.++++ .++|++++++.
T Consensus        82 s~~d~~~~l~r~p~~l~~~~~~~l~~~v~~L~-~lGv~~~~~~~~l~~~~~~~~~~--~~~~~~v~~l-~~lG~~~~~~~  157 (345)
T PF02536_consen   82 SDEDIVKVLKRYPRILSFSVEENLSPNVAFLR-SLGVPPSQIISLLISRPPLFLSS--EKIKERVEFL-KELGFDPEKIG  157 (345)
T ss_dssp             -HHHHHHHHHH-SHHHHS---HHHHHHHHHHH-HTT--HHHHHHHHHH-CHHHHS---HHHHCHHHHH-CCCTSSHHHHC
T ss_pred             CHHHHHHHHHhcchhhccchHhhhhhhhhHHh-hcCCcHHHHHHHHHhcCccccch--hHHHHHHHHH-HHhCCCchhhc
Confidence            99999999999999999887768999999997 89999998888888888776655  4689999999 69999999999


Q ss_pred             HhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCccc----------------------------
Q 010686          356 KMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLED----------------------------  407 (504)
Q Consensus       356 ~ml~~~P~iL~~s~e~~L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~----------------------------  407 (504)
                      +++.++|.++....++.|+++++||+++||+.+++.+++.++|.+|.+|+++                            
T Consensus       158 ~vi~~~P~~l~~~~~~~~~~~v~~L~~~G~~~~~i~~~l~~~P~~l~~s~~~~l~~~~~l~~~~~~~~~~~i~~~p~il~  237 (345)
T PF02536_consen  158 RVIAKNPRLLLSDSESELKPKVEFLRSLGFSKEDIGKLLRKCPRLLSLSVEKILEPVLYLLSSGGVEEERVIKKFPQILS  237 (345)
T ss_dssp             CCHHHHHHHHCGSCCCCCHHHHHHHHHCTT-GHHHHHHHHHTTTGGGCGCHC---------------------------T
T ss_pred             ccccccchhhccccHHHHHHHHHHHHhhcccchhhhHHhhcccceecccccccccccccccccccccccccccccccccc
Confidence            9999999888888889999999999999999999999999999999999765                            


Q ss_pred             ----chHHHHHHHHHHhCCcH----HHHhhcCceeccCcccchHHHHHHHHHh
Q 010686          408 ----NLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSL  452 (504)
Q Consensus       408 ----~L~pk~~fL~~~mg~~~----~~I~k~P~lL~~SLekrI~PR~~fL~~L  452 (504)
                          ++.++++||.+ +|++.    ..+.++|++|+||.++ ++|++.|+..-
T Consensus       238 ~~~~~l~~~i~~L~~-lG~s~~ei~~mv~~~P~iL~~s~e~-l~~k~~fl~~~  288 (345)
T PF02536_consen  238 LSEEKLKPKIEFLQS-LGFSEEEIAKMVRRFPQILSYSIEK-LKPKFEFLVKE  288 (345)
T ss_dssp             HHHHHHHHHHHHHHT-TT--HHHHHHHHHHSGGGGGS-HHH-HHHHHHHHHHC
T ss_pred             cchHhHHHHHHHHHH-hcCcHHHHHHHHHhCcchhhcchhh-hhHHHHHHHHH
Confidence                58889999887 89885    4578899999999985 99999999853

The precursors contain a mitochondrial targeting sequence, and the mature mTERF exhibits three leucine zippers, of which one is bipartite, and two widely spaced basic domains. Both basic domains and the three leucine zipper motifs are necessary for DNA binding. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers []. The rest of the family consists of hypothetical proteins none of which have any functional information.; PDB: 3M66_A 3OPG_A 3MVA_O 3MVB_O 3N7Q_A 3N6S_A.

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.92  E-value=4e-25  Score=234.59  Aligned_cols=288  Identities=27%  Similarity=0.436  Sum_probs=237.8

Q ss_pred             hhhhhhhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCc-c
Q 010686          147 NTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINV-C  225 (504)
Q Consensus       147 ~~v~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~-~  225 (504)
                      ..++..++..||+..++.++         +..+|+++ .++.+.-+.+.+.+|.+.|++...+.++++.-|.+|.... .
T Consensus        92 ~s~~~~l~s~g~~~~~i~s~---------i~~~p~ll-~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~  161 (413)
T KOG1267|consen   92 SSVLSSLRSLGFTDSQISSI---------ILSSPKLL-YLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGE  161 (413)
T ss_pred             HHHHHHHHhcCCchhhcccc---------cccCchhh-hccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCC
Confidence            45777899999999999984         44568888 7887888888888999999999999999988677776443 5


Q ss_pred             CHHHHHHHHHHCC--CChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHH
Q 010686          226 SARERLEYLLSVG--VKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTV  303 (504)
Q Consensus       226 ~l~~~l~fL~slG--ls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v  303 (504)
                      ++...++||++++  .....+.+++...|......  ..+. +++++.++|.....+..++..+|..+....  .+...+
T Consensus       162 ~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~--~~v~-~~~~~~~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~  236 (413)
T KOG1267|consen  162 SLSTFIEFLKSIPPELLSSVVERLLTPVPSFLLNE--NSVE-RLDIRRELGVKPRLLKSLLESQPRPVLLYL--KLKARL  236 (413)
T ss_pred             chhhHHHHhhccchhhhhhHHHHhccccccccccc--cccc-cchhhHHhCCCHHHHHHHHhcCccceeeeh--hhhhhh
Confidence            8899999999974  67777777776666433222  2344 888999999999999888888888876543  366677


Q ss_pred             HHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhcccccccccccc------------
Q 010686          304 RYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDD------------  371 (504)
Q Consensus       304 ~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~------------  371 (504)
                      .++. .+|+.+..  +++...|.++.+..+.++++++++| +.+||+.++++.|++++|++|+++.+.            
T Consensus       237 ~~i~-~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l-~~~Gf~~~di~~~~~k~P~~l~~s~~~~~~~~~~~~~~~  312 (413)
T KOG1267|consen  237 PFLL-TLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVL-KSLGFSREEIWKMVKKCPQILGYSVKKNLKTTEYLLKNP  312 (413)
T ss_pred             hhHH-HhccCCch--hHHHhhhhhhcccccccHHHHHHHH-HHcCCCHHHHHHHHHhCchheEeehhhhhHHHHHHHhcc
Confidence            7774 77777766  6666677888877888888888888 577888888888888888888888543            


Q ss_pred             ---------------chHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceecc
Q 010686          372 ---------------GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSL  436 (504)
Q Consensus       372 ---------------~L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~  436 (504)
                                     .+.++++|+..+|++..++..|++++|+++.+|+++.++++.+|+...|+++.+.++.+|+++.|
T Consensus       313 ~~~~k~p~~l~~s~~~l~~~ie~l~~~g~~~~q~~~~~~~~Pq~l~~s~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y  392 (413)
T KOG1267|consen  313 KHILKFPQLLRSSEDKLKPRIEFLLSLGFSDVQILEMVKRFPQYLSFSLEKILKRKYEYLLKGLLRPLSALVSFPAFFGY  392 (413)
T ss_pred             hhhhhhhhhhhccchhhhhhHHHHHHcCCcHHHHHHHHhhccHHhhhhHHhhhhhhHHHHHHHcCchHHHHhccchhhcc
Confidence                           48999999999999999999999999999999987799999999999999999999999999999


Q ss_pred             CcccchHHHHHHHHHhh
Q 010686          437 SLDQRIRPRHRFLVSLK  453 (504)
Q Consensus       437 SLekrI~PR~~fL~~L~  453 (504)
                      ++++|+.||+.+...++
T Consensus       393 ~le~ri~pr~~~~~~~~  409 (413)
T KOG1267|consen  393 SLEKRIRPRFNVIKKLG  409 (413)
T ss_pred             chhhcchhHHHHHHHHh
Confidence            99999999999999876

>KOG1267 consensus Mitochondrial transcription termination factor, mTERF [Transcription; General function prediction only]

Probab=99.83  E-value=1.9e-20  Score=198.88  Aligned_cols=250  Identities=24%  Similarity=0.407  Sum_probs=215.1

Q ss_pred             CCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHH
Q 010686          189 DEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHV  267 (504)
Q Consensus       189 e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v  267 (504)
                      ..++..++++|+++|++..+|..++..+|.++..+.+ .+.+++.+|.+.|++...+.+++...|.+|+.+...++.+.+
T Consensus        88 ~~~p~s~~~~l~s~g~~~~~i~s~i~~~p~ll~~~~~~~l~~~~~~l~~~g~~~s~l~~i~s~~~~il~~~~~~~~~~~~  167 (413)
T KOG1267|consen   88 SVNPSSVLSSLRSLGFTDSQISSIILSSPKLLYLSSENILKPKLRLLDSLGLPSSELSSIVSVVPKILLKSKGESLSTFI  167 (413)
T ss_pred             ccCcHHHHHHHHhcCCchhhcccccccCchhhhccchhhhhhhhhhhhccCccccccchhhhccHHHHHhhcCCchhhHH
Confidence            3578899999999999999999999999999998877 677888899999999999999999999999988888999999


Q ss_pred             HHHHHcC--CCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhh
Q 010686          268 AFLISLG--IPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSK  345 (504)
Q Consensus       268 ~fL~~lG--ls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~  345 (504)
                      +||++++  .....+.+++...|......  ..+. ++++++ .+|+.+..+...+..+|.......  .+...+.++ .
T Consensus       168 ~~l~~~~~~~~~s~~~~~~~~~~~~~~~~--~~v~-~~~~~~-~lg~~~~~L~~~l~~~~~~~~~~~--~l~~~~~~i-~  240 (413)
T KOG1267|consen  168 EFLKSIPPELLSSVVERLLTPVPSFLLNE--NSVE-RLDIRR-ELGVKPRLLKSLLESQPRPVLLYL--KLKARLPFL-L  240 (413)
T ss_pred             HHhhccchhhhhhHHHHhccccccccccc--cccc-cchhhH-HhCCCHHHHHHHHhcCccceeeeh--hhhhhhhhH-H
Confidence            9999985  77878888877776444332  2355 899997 899999999999999999988654  466677788 4


Q ss_pred             hcCCCchhHHHhhhccccccccccccchHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHH
Q 010686          346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQ  425 (504)
Q Consensus       346 ~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~  425 (504)
                      .+||.+..  .++.+.|.++.++.++++++|+++|+++||+.+||.+|+.++|++|++| ++++..++.|+++.    ..
T Consensus       241 ~~g~~p~~--~~~v~~~~~~~~~~~~~i~~kv~~l~~~Gf~~~di~~~~~k~P~~l~~s-~~~~~~~~~~~~~~----~~  313 (413)
T KOG1267|consen  241 TLGFDPKT--REFVKAPILLSYSSEKTLEPKVEVLKSLGFSREEIWKMVKKCPQILGYS-VKKNLKTTEYLLKN----PK  313 (413)
T ss_pred             HhccCCch--hHHHhhhhhhcccccccHHHHHHHHHHcCCCHHHHHHHHHhCchheEee-hhhhhHHHHHHHhc----ch
Confidence            89988877  7888899999999999999999999999999999999999999999999 57888888888776    23


Q ss_pred             HHhhcCceeccCcccchHHHHHHHHHhh
Q 010686          426 SLTKYPMYLSLSLDQRIRPRHRFLVSLK  453 (504)
Q Consensus       426 ~I~k~P~lL~~SLekrI~PR~~fL~~L~  453 (504)
                      .+.++|+++.+|.. .+.+|++++..+|
T Consensus       314 ~~~k~p~~l~~s~~-~l~~~ie~l~~~g  340 (413)
T KOG1267|consen  314 HILKFPQLLRSSED-KLKPRIEFLLSLG  340 (413)
T ss_pred             hhhhhhhhhhccch-hhhhhHHHHHHcC
Confidence            38888888877754 7888888888876

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.33  E-value=0.0024  Score=41.48  Aligned_cols=28  Identities=43%  Similarity=0.669  Sum_probs=17.8

Q ss_pred             HHHhccchhccCcccchHHHHHHHHHHhCC
Q 010686          393 VLRSLTQVLSLSLEDNLKPKYTYLINELHN  422 (504)
Q Consensus       393 ~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~  422 (504)
                      ++.++|.+|++| +++|+++++||. .+|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~-~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLK-ELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHH-HcCC
Confidence            456666666666 566666666666 4554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>smart00733 Mterf Mitochondrial termination factor repeats

Probab=96.29  E-value=0.003  Score=41.03  Aligned_cols=28  Identities=50%  Similarity=0.813  Sum_probs=16.3

Q ss_pred             HHhhCCcccccCcccchHHHHHHHHHcCC
Q 010686          247 ILLRQPQILEYTVENNLESHVAFLISLGI  275 (504)
Q Consensus       247 il~~~P~lL~~s~e~~L~p~v~fL~~lGl  275 (504)
                      ++.++|.+|+.+ ++++.++++||+++|+
T Consensus         3 ~~~~~P~il~~~-~~~l~~~~~~l~~~g~   30 (31)
T smart00733        3 ILKKFPQILGYS-EKKLKPKVEFLKELGF   30 (31)
T ss_pred             hhhhCcCccccc-HHHhhHHHHHHHHcCC
Confidence            455566666666 3556666666665554

Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=95.45  E-value=0.0039  Score=52.34  Aligned_cols=11  Identities=9%  Similarity=0.054  Sum_probs=5.0

Q ss_pred             hhhhhhhhhcc
Q 010686          146 RNTIKNSFDDT  156 (504)
Q Consensus       146 ~~~v~~~~~~~  156 (504)
                      .-.|-|+++.|
T Consensus        53 ~~~v~rYltSf   63 (101)
T PF09026_consen   53 FTMVKRYLTSF   63 (101)
T ss_dssp             HHHHHHHHCTS
T ss_pred             cchHhhhhhcc
Confidence            34444444444

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=95.25  E-value=0.009  Score=63.04  Aligned_cols=11  Identities=27%  Similarity=0.425  Sum_probs=4.4

Q ss_pred             ccccccccccc
Q 010686           43 ILKTNRKSRYG   53 (504)
Q Consensus        43 ~~~~~~~~~~~   53 (504)
                      +-|-|.=++-|
T Consensus        32 lkKE~~IRkLg   42 (458)
T PF10446_consen   32 LKKENAIRKLG   42 (458)
T ss_pred             HHHHHHHhhhh
Confidence            33444444433

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box

Probab=94.23  E-value=0.013  Score=49.30  Aligned_cols=9  Identities=33%  Similarity=0.235  Sum_probs=0.0

Q ss_pred             CCCCCCCCc
Q 010686           56 LSLYDDDSE   64 (504)
Q Consensus        56 ~~~~~~~~~   64 (504)
                      .+--|.|+|
T Consensus        11 dse~dsdEd   19 (101)
T PF09026_consen   11 DSESDSDED   19 (101)
T ss_dssp             ---------
T ss_pred             ccccccccc
Confidence            333333333

CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=93.20  E-value=0.046  Score=62.00  Aligned_cols=13  Identities=23%  Similarity=0.263  Sum_probs=5.9

Q ss_pred             ccccCCCCceEEE
Q 010686           23 VQTRPNTPRFVVL   35 (504)
Q Consensus        23 ~~~~~~~~~~~~~   35 (504)
                      +-|-|-.|+..-|
T Consensus      1353 iaTi~v~R~~~Dl 1365 (1516)
T KOG1832|consen 1353 IATIPVDRCLLDL 1365 (1516)
T ss_pred             ceeeecccchhhh
Confidence            3444555544433

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=93.05  E-value=0.058  Score=62.64  Aligned_cols=9  Identities=33%  Similarity=0.324  Sum_probs=4.5

Q ss_pred             cccCCCCCC
Q 010686           53 GQTLSLYDD   61 (504)
Q Consensus        53 ~~~~~~~~~   61 (504)
                      |+..++.|+
T Consensus      1732 GEed~~Ddd 1740 (3015)
T KOG0943|consen 1732 GEEDHHDDD 1740 (3015)
T ss_pred             Ccccccccc
Confidence            555555444

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=92.42  E-value=1.3  Score=46.11  Aligned_cols=202  Identities=16%  Similarity=0.179  Sum_probs=107.9

Q ss_pred             HHCCCChhhHHHHHhhCCcccccCcc-------cchHHHHHHHH--HcCCCchhhhhHhhhcCcccccccccch-hHHHH
Q 010686          235 LSVGVKQRDVRRILLRQPQILEYTVE-------NNLESHVAFLI--SLGIPNSKIGQIIAATPSLFSYSVENSL-KPTVR  304 (504)
Q Consensus       235 ~slGls~~~l~kil~~~P~lL~~s~e-------~~L~p~v~fL~--~lGls~~~I~klL~~~P~lL~~s~e~~l-~p~v~  304 (504)
                      ..+|+....+...+.+||.||.....       -.+.+...-|.  +..+-.+.-..++.+=-.+|+++.++.| -.++.
T Consensus        45 ~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~  124 (335)
T PF11955_consen   45 RQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIA  124 (335)
T ss_pred             HhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHH
Confidence            35788768888888888888866430       11222222221  1111111112222222345666655433 24667


Q ss_pred             HHHHHhCCChhHHHHHHhhCccceeccc-c--ccchhhhhhhhhhcCCCchhHHHhh-----------------hccccc
Q 010686          305 YLVEEVGINEKSLGKVVQLSPQVLVQRI-D--ISWNTRCIFLSKELGAPRDDVVKMV-----------------TKHPQL  364 (504)
Q Consensus       305 fL~~~lGv~~~~l~~vI~~~P~lL~~~~-e--~~l~~kv~fL~~~lG~s~~~v~~ml-----------------~~~P~i  364 (504)
                      .++.++|++.+-...++.+||..+.... .  ...-+-+.|= .++.++.-+...+.                 .++|.=
T Consensus       125 ~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~LeLv~Wd-~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G  203 (335)
T PF11955_consen  125 HLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRYLELVSWD-PELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKG  203 (335)
T ss_pred             HHHHHcCCChhhccchhhhCCCCcEEeecCCCCCEEEEeecC-CccCcCccchhhhhccccccccccCCceeeeecCCCC
Confidence            7777899999888888999998876422 0  0000001111 12233222221111                 112221


Q ss_pred             cccccccchHHHHHHHHHhcCC-------------hHHHHHHHHhccchhccCcccc-hHHHHHHHHHHhCCcH---HHH
Q 010686          365 LHYSIDDGLLPRINFLRSIGMR-------------NSDILKVLRSLTQVLSLSLEDN-LKPKYTYLINELHNEV---QSL  427 (504)
Q Consensus       365 L~~s~e~~L~~kv~fL~~lG~s-------------~~ev~~~v~r~P~iL~~SlE~~-L~pk~~fL~~~mg~~~---~~I  427 (504)
                      +.  +....+.+++-++++-+.             .+.=.++|.-.-.+|++-+|++ ...++..|.+.+|+|.   ..+
T Consensus       204 ~~--l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l  281 (335)
T PF11955_consen  204 FR--LKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLL  281 (335)
T ss_pred             cc--ccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHH
Confidence            11  224556666666553221             1111234444556788887766 4567888999999985   689


Q ss_pred             hhcCceeccCcc
Q 010686          428 TKYPMYLSLSLD  439 (504)
Q Consensus       428 ~k~P~lL~~SLe  439 (504)
                      .++|.||..|..
T Consensus       282 ~rHPgIFYvS~k  293 (335)
T PF11955_consen  282 LRHPGIFYVSLK  293 (335)
T ss_pred             HhCCCeEEEecc
Confidence            999999999964

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]

Probab=92.31  E-value=0.077  Score=61.67  Aligned_cols=14  Identities=14%  Similarity=0.204  Sum_probs=6.9

Q ss_pred             ccccCCCCCCCCcc
Q 010686           52 YGQTLSLYDDDSEE   65 (504)
Q Consensus        52 ~~~~~~~~~~~~~~   65 (504)
                      .|+...--|+-||+
T Consensus      1727 ~~ef~GEed~~Ddd 1740 (3015)
T KOG0943|consen 1727 EGEFAGEEDHHDDD 1740 (3015)
T ss_pred             cccccCcccccccc
Confidence            35455555554444

>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins

Probab=90.96  E-value=0.22  Score=45.88  Aligned_cols=49  Identities=20%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             hcccccccccCCCCceEEEeeccccccccccccccccccCCCCCCCCcccC
Q 010686           17 LHSHSLVQTRPNTPRFVVLSTHSNAKILKTNRKSRYGQTLSLYDDDSEEEG   67 (504)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (504)
                      .|-..|--+.|....-+|.+.-+.-.||-.+|+.+  +.-+.||.+.+|.+
T Consensus        15 V~~g~L~~~~~~~~~~~vey~G~~r~vL~r~~~~~--~n~~~~d~~~~~~d   63 (149)
T PF08595_consen   15 VHRGQLPPNGPSLYEKVVEYNGSERSVLQRKRIRF--RNPPRIDEEGDEID   63 (149)
T ss_pred             eecccccCCCccccceeeEECCeeeeEeecchhhc--ccccccCccccccc
Confidence            33334422345555667777777777887444444  33556665555443

In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].

>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []

Probab=87.67  E-value=1.1  Score=36.67  Aligned_cols=8  Identities=25%  Similarity=0.256  Sum_probs=3.8

Q ss_pred             cccCCCCc
Q 010686           24 QTRPNTPR   31 (504)
Q Consensus        24 ~~~~~~~~   31 (504)
                      +.||+--|
T Consensus         9 ~~RPpY~G   16 (77)
T PF12253_consen    9 NVRPPYYG   16 (77)
T ss_pred             CCCCCEee
Confidence            44555433

The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].

>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []

Probab=87.21  E-value=0.18  Score=57.75  Aligned_cols=13  Identities=0%  Similarity=-0.168  Sum_probs=0.0

Q ss_pred             hhhhhhhhhhhcc
Q 010686          144 NRRNTIKNSFDDT  156 (504)
Q Consensus       144 ~~~~~v~~~~~~~  156 (504)
                      .||.-+|..-+.+
T Consensus       759 qA~A~Ace~Ar~~  771 (787)
T PF03115_consen  759 QAWAHACEEARKV  771 (787)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHh
Confidence            3444444444444

Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.

>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins

Probab=86.49  E-value=0.21  Score=46.06  Aligned_cols=7  Identities=43%  Similarity=0.506  Sum_probs=2.6

Q ss_pred             cccCCCC
Q 010686           53 GQTLSLY   59 (504)
Q Consensus        53 ~~~~~~~   59 (504)
                      |+....+
T Consensus       103 G~~~~~~  109 (149)
T PF03066_consen  103 GQHLVAM  109 (149)
T ss_dssp             EEEEEE-
T ss_pred             Ccccccc
Confidence            5443333

They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.

>PTZ00415 transmission-blocking target antigen s230; Provisional

Probab=85.42  E-value=0.5  Score=57.24  Aligned_cols=16  Identities=19%  Similarity=0.604  Sum_probs=12.6

Q ss_pred             HHHHhhcCceeccCcc
Q 010686          424 VQSLTKYPMYLSLSLD  439 (504)
Q Consensus       424 ~~~I~k~P~lL~~SLe  439 (504)
                      ...+-.||.+|.+.+.
T Consensus       684 ~ky~~~yp~~~ifp~n  699 (2849)
T PTZ00415        684 AKYLNGYPSFFIFPFN  699 (2849)
T ss_pred             hhhccCCCceEEeehh
Confidence            3577888999988885

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=81.97  E-value=0.73  Score=53.19  Aligned_cols=15  Identities=33%  Similarity=0.758  Sum_probs=6.7

Q ss_pred             CCCCCCCCCCccCCC
Q 010686           72 DDDDEGKEDDWLADD   86 (504)
Q Consensus        72 ~~~~~~~~~~~~~~~   86 (504)
                      ||+||||.+|.-+||
T Consensus       327 ed~eDde~~deYsDD  341 (1233)
T KOG1824|consen  327 EDEEDDEQDDEYSDD  341 (1233)
T ss_pred             hccccchhccccccc
Confidence            333444434444555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	504
3m66_A	270	Crystal Structure Of Human Mitochondrial Transcript		2e-08
3opg_A	298	Crystal Structure Of Human Mitochondrial Transcript		4e-08

>pdb|3M66|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 270

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 67  AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 120
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 121 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 179
Query: 406 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 458
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 180 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAK 234
Query: 459 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 235 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 270

>pdb|3OPG|A Chain A, Crystal Structure Of Human Mitochondrial Transcription Termination Factor 3 Length = 298

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 132/277 (47%), Gaps = 27/277 (9%)
Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 35  ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 94
Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVL---VQRIDISWNTRCIFLSK 345
           ++FS  +EN LK  V YL  +   ++  + ++V+ +P +L   V+R+D     R  F  K
Sbjct: 95  AIFSEDLEN-LKTRVAYLHSK-NFSKADVAQMVRKAPFLLNFSVERLD----NRLGFFQK 148
Query: 346 ELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSL 405
           EL         +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + 
Sbjct: 149 ELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN- 207
Query: 406 EDNLKPKYTYLINELHNEV----QSLTKYPMYLSLSLDQRIRPRHRFLVSLKKA---PKG 458
               K K T   + +HN +      + K+P   +  L  +++ RH FL  L +A   P  
Sbjct: 208 ----KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRL-FKVKERHLFLTYLGRAQYDPAK 262
Query: 459 PFPLSL----FIPTDECFCQKWAGTTVDKYLAFRQKL 491
           P  +SL     IP DE FC++ A  +V  +  F + L
Sbjct: 263 PNYISLDKLVSIP-DEIFCEEIAKASVQDFEKFLKTL 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	504
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	2e-65
3mva_O	343	Transcription termination factor, mitochondrial; a	1e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A Length = 270

 Score =  211 bits (540), Expect = 2e-65
 Identities = 59/269 (21%), Positives = 124/269 (46%), Gaps = 11/269 (4%)

Query: 229 ERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATP 288
           E L+ L+ +GV    + +       +L    E +++  + FL  +GI ++++G  +    
Sbjct: 7   ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNH 66

Query: 289 SLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELG 348
           ++FS  +EN LK  V YL      ++  + ++V+ +P +L   ++   + R  F  KEL 
Sbjct: 67  AIFSEDLEN-LKTRVAYL-HSKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELE 123

Query: 349 APRDDVVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDN 408
                   +V + P+LL  S++        +   +G ++++I  ++  + ++L+ + +  
Sbjct: 124 LSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTAN-KMK 182

Query: 409 LKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGP-----FPL- 462
           L   + ++ N +      + K+P   +  L  +++ RH FL  L +A   P       L 
Sbjct: 183 LTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLD 241

Query: 463 SLFIPTDECFCQKWAGTTVDKYLAFRQKL 491
            L    DE FC++ A  +V  +  F + L
Sbjct: 242 KLVSIPDEIFCEEIAKASVQDFEKFLKTL 270

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A* Length = 343

 Score =  170 bits (431), Expect = 1e-48
 Identities = 52/298 (17%), Positives = 114/298 (38%), Gaps = 16/298 (5%)

Query: 190 EKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILL 249
                L  +L + G  +     +  R+  ++     +  +R +    +     ++  IL 
Sbjct: 49  TNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILE 108

Query: 250 RQPQILEYTVEN-NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVE 308
           R P+    +  N NLE+++ FL S+G+    + +++   P  FS S++   K  V +L  
Sbjct: 109 RSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEFLQA 167

Query: 309 -----EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-P 362
                        + K++  +P +L+Q           FL        ++++ ++     
Sbjct: 168 AGLSLGHNDPADFVRKIIFKNPFILIQSTK-RVKANIEFLRSTFNLNSEELLVLICGPGA 226

Query: 363 QLLHYSIDD---GLLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE 419
           ++L  S D            L S+G    ++ K + S   V+ L+ E     K   L+ E
Sbjct: 227 EILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLA-EKKFNDKIDCLMEE 285

Query: 420 LHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLSLFIPTDECFCQKWA 477
            +  +  + + P  L  S+   ++ R + LV+          ++L   + + +  K  
Sbjct: 286 -NISISQIIENPRVLDSSI-STLKSRIKELVNAGCNLSTL-NITLLSWSKKRYEAKLK 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 77/513 (15%), Positives = 151/513 (29%), Gaps = 152/513 (29%)

Query: 34  VLSTHSNAKILKTNRKSRYGQTLSLYD--DDSEEEGEDDDDDDDEGKEDDWLAD------ 85
           +LS      I+ +  K     TL L+      +EE      ++       +L        
Sbjct: 45  ILSKEEIDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 86  ------DDDFAEIEEYDVNG----SKY---RSQKGVNKSKSS--RRSPVKGCGV-GSFRS 129
                    + E  +   N     +KY   R Q    K + +     P K   + G   S
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS 161

Query: 130 GRS-LQGAQEQLDIRNRRNTIKNSFDDTYY--NSKDVDQRGKVMTRNATENRYQRLSEEI 186
           G++ +  A +          ++   D   +  N K+ +    V+         Q+L  +I
Sbjct: 162 GKTWV--ALDVC----LSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQI 209

Query: 187 ELDEKWLPLLDYLSTFGLK------ESHFIQMYERHMPSLQI--NVCSARERLEYLLSVG 238
             D  W    D+ S   L+      E   +   + +   L +  NV +A+          
Sbjct: 210 --DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--------- 258

Query: 239 VKQRDVR-RILL--RQPQILEYTVENNLESHVA----------------FLISLGIPNSK 279
               ++  +ILL  R  Q+ ++ +     +H++                 L  L      
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 280 ---------------IGQIIAATPSLFSY---------------SVENSLKPT-VRYLVE 308
                          I + I    + +                 S+   L+P   R + +
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFD 376

Query: 309 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVK-----MVTKHPQ 363
            + +   S      +   +L     + W      + K        V K     +V K P+
Sbjct: 377 RLSVFPPS----AHIPTILLS----LIWFD----VIKSD--VMVVVNKLHKYSLVEKQPK 422

Query: 364 LLHYSIDDGLLPRINFLRSIGMRNSDIL--KVLRSLTQVLSLSLEDNLKPK-----YTYL 416
               SI       I     + + N   L   ++       +   +D + P      Y+++
Sbjct: 423 ESTISIPS-----IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 417 -----INELHNEVQSLTKYPMYLSLS-LDQRIR 443
                  E    +       ++L    L+Q+IR
Sbjct: 478 GHHLKNIEHPERMTLFRM--VFLDFRFLEQKIR 508

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 59/349 (16%), Positives = 111/349 (31%), Gaps = 89/349 (25%)

Query: 185 EIELDEKWLPLLDYLSTFGLKESHFIQMYE-RHMPSLQINVCSARERLEYLLSVGVKQRD 243
           + E  E      D LS F   E  F+  ++ + +  +  ++ S  E +++++        
Sbjct: 8   DFETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSG 63

Query: 244 VRR---ILLRQP-QILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSL----FSYSV 295
             R    LL +  ++++  VE  L  +  FL+S       I +     PS+    +    
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS------PI-KTEQRQPSMMTRMYIEQR 116

Query: 296 E---NSLKPTVRYLV---EEVGINEKSL-----------------GKVVQLSPQVL---- 328
           +   N  +   +Y V   +      ++L                 GK   ++  V     
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYK 175

Query: 329 VQRI---DISWNTRCIFLSKELGAPR--DDVVKMVTKHPQLLHYSIDDGLLPRINFLRSI 383
           VQ      I W          L      + V++M+    Q L Y ID     R +   +I
Sbjct: 176 VQCKMDFKIFWLN--------LKNCNSPETVLEML----QKLLYQIDPNWTSRSDHSSNI 223

Query: 384 GMRNSDILKVLRSLTQ----VLSLSLEDNLKPKYTYLINELHNEVQSL--TKYPMYLSLS 437
            +R   I   LR L +       L +  N++       N  +   + L  T++       
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILLTTRFK-----Q 276

Query: 438 LDQRIRPRHRFLVSLKKAPKGPFP---LSLFIPTDECFCQKWAGTTVDK 483
           +   +       +SL        P    SL +        K+       
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLL--------KYLDCRPQD 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	504
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	100.0
3mva_O	343	Transcription termination factor, mitochondrial; a	100.0
3m66_A	270	Mterf3, mterf domain-containing protein 1, mitocho	100.0
4fp9_B	335	Mterf domain-containing protein 2; modification en	99.93
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.53
4fzv_B	239	Mterf domain-containing protein 2; mterf fold, met	99.03
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	86.6
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	82.0
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	81.06

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=3.8e-46  Score=384.66  Aligned_cols=311  Identities=16%  Similarity=0.230  Sum_probs=271.7

Q ss_pred             hhhhhhhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccC
Q 010686          147 NTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCS  226 (504)
Q Consensus       147 ~~v~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~  226 (504)
                      ..|+++|.++|++..+      +      ++.+|+++ ..+ .+++.++++||+++|++.++|++++.++|.+|.+++++
T Consensus        20 ~~~v~~L~s~Gl~~~~------~------~~~~p~l~-~~s-~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~   85 (343)
T 3mva_O           20 EDLLKNLLTMGVDIDM------A------RKRQPGVF-HRM-ITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPEN   85 (343)
T ss_dssp             CCHHHHHHHHTCCHHH------H------HHHCGGGG-GCS-CCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHH
T ss_pred             HHHHHHHHHcCCCHHH------H------HHhCchhh-ccC-cccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHH
Confidence            5688999999988332      2      45578876 444 46899999999999999999999999999999999889


Q ss_pred             HHHHHHHHHHCCCChhhHHHHHhhCCcc-cccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHH
Q 010686          227 ARERLEYLLSVGVKQRDVRRILLRQPQI-LEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY  305 (504)
Q Consensus       227 l~~~l~fL~slGls~~~l~kil~~~P~l-L~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~f  305 (504)
                      +.++++||+++|++++++.+++.++|++ ++...++++.|+++||+++|++.++|++++.++|++|++++++ ++++++|
T Consensus        86 l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~-~~~~v~~  164 (343)
T 3mva_O           86 LSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDL-NKQMVEF  164 (343)
T ss_dssp             HHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHH-HHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHH-hhHHHHH
Confidence            9999999999999999999999999995 4444435899999999999999999999999999999999986 5999999


Q ss_pred             HHHHhCCC------hhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhcc-ccccccccccchHHHHH
Q 010686          306 LVEEVGIN------EKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKH-PQLLHYSIDDGLLPRIN  378 (504)
Q Consensus       306 L~~~lGv~------~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~-P~iL~~s~e~~L~~kv~  378 (504)
                      |+ ++|++      ...|.+++.++|.+|+.+ +.+++++++||++++|++++++..++.+. |.++..+ .+.+++++.
T Consensus       165 L~-~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s-~~~l~~~~~  241 (343)
T 3mva_O          165 LQ-AAGLSLGHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLS-NDYARRSYA  241 (343)
T ss_dssp             HH-HHHHHTTCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCC-TTHHHHHHH
T ss_pred             HH-HhCCCcCCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhcc-HHHHHHHHH
Confidence            97 67764      678999999999999999 56899999999657999999999999885 5788888 578999997


Q ss_pred             HHH----HhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHHHHHHhhc
Q 010686          379 FLR----SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKK  454 (504)
Q Consensus       379 fL~----~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~  454 (504)
                      |+.    ++||+.+++..||.++|+||++|. ++|++|++||++ ||+++++|+++|++|+||+| ||+|||++|+..|.
T Consensus       242 ~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~  318 (343)
T 3mva_O          242 NIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGC  318 (343)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCC
Confidence            776    699999999999999999999995 679999999999 99999999999999999999 99999998887663


Q ss_pred             CCCCCCCcccccCCHHHHHHHhcCC
Q 010686          455 APKGPFPLSLFIPTDECFCQKWAGT  479 (504)
Q Consensus       455 ~~k~~~~Ls~L~~sd~~F~~~~~~~  479 (504)
                      -.. .-.+..|.+||++|+++|.+.
T Consensus       319 ~~~-~~~~~~l~~s~~~F~~~~~~~  342 (343)
T 3mva_O          319 NLS-TLNITLLSWSKKRYEAKLKKL  342 (343)
T ss_dssp             CSS-SSCGGGGGSCHHHHHHHHHHT
T ss_pred             CCC-CCcchhhcCCHHHHHHHHhcc
Confidence            111 112344679999999999754

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=7.5e-46  Score=369.99  Aligned_cols=258  Identities=22%  Similarity=0.422  Sum_probs=223.4

Q ss_pred             HHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHH
Q 010686          228 RERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLV  307 (504)
Q Consensus       228 ~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~  307 (504)
                      .++++||.++|++..++.+....+|.+|++++++++.|+++||.++|++.++|+++|.++|.+|++++++ ++|+++||+
T Consensus         6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~   84 (270)
T 3m66_A            6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH   84 (270)
T ss_dssp             HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence            4678888888888888877666667778888878888888888888888888888888888888888886 888888886


Q ss_pred             HHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHH-HHhcCC
Q 010686          308 EEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFL-RSIGMR  386 (504)
Q Consensus       308 ~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL-~~lG~s  386 (504)
                       ++|+++.++.+++.++|++|+.+++ +++++++||++++|++.+++.+++.++|.+++.+. +.++++++++ .++||+
T Consensus        85 -~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~s  161 (270)
T 3m66_A           85 -SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGFK  161 (270)
T ss_dssp             -HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCCC
T ss_pred             -HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCCC
Confidence             7888888888888888888888887 48888888855789999999999999999999884 6799999986 699999


Q ss_pred             hHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHHHHHHhhcCC--CCC---CC
Q 010686          387 NSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP--KGP---FP  461 (504)
Q Consensus       387 ~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~~~--k~~---~~  461 (504)
                      .++|..||.++|++|++| +++|++|++||+++||+++++|+++|++|+||+| ||+|||.|+++|+..+  +..   ++
T Consensus       162 ~~ei~~~v~~~P~il~~s-~~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~  239 (270)
T 3m66_A          162 HNEIQHMITRIPKMLTAN-KMKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYIS  239 (270)
T ss_dssp             HHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCC
T ss_pred             HHHHHHHHHhCChhheec-HHHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCC
Confidence            999999999999999999 4899999999999999999999999999999999 9999999999998532  211   45


Q ss_pred             cccc-cCCHHHHHHHhcCCChHHHHHHHHHH
Q 010686          462 LSLF-IPTDECFCQKWAGTTVDKYLAFRQKL  491 (504)
Q Consensus       462 Ls~L-~~sd~~F~~~~~~~s~e~y~~f~~~l  491 (504)
                      |+++ .+||++|+++|+++++|+|+.|++.|
T Consensus       240 L~~~l~~sd~~F~~~~~~~~~eey~~f~k~~  270 (270)
T 3m66_A          240 LDKLVSIPDEIFCEEIAKASVQDFEKFLKTL  270 (270)
T ss_dssp             HHHHHHSCHHHHHHHTTCSCHHHHHHHHTTC
T ss_pred             HHHHhcCCHHHHHHHHhcCCHHHHHHHHhcC
Confidence            6554 69999999999999999999999753

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=100.00  E-value=5.4e-37  Score=314.08  Aligned_cols=226  Identities=21%  Similarity=0.330  Sum_probs=192.6

Q ss_pred             chHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhh
Q 010686          262 NLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCI  341 (504)
Q Consensus       262 ~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~  341 (504)
                      .+...+.+|.++|+++.+|+++|+.+|.++..+    +.+++.||. .+|+++++|.++|.++|++|..+++ ++++++.
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~~----l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~  118 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASLQQ----LLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSS  118 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHHH----HHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccchhH----HHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHHHH
Confidence            466677778888888888888888888887543    567788886 7888888888888888888888876 5888888


Q ss_pred             hhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHh
Q 010686          342 FLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL  420 (504)
Q Consensus       342 fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~m  420 (504)
                      || +++|++.+++.+++.++|++|+++. +.+..++.+|. ++||+.++|..||.++|+||++| +++|++|++||+++|
T Consensus       119 fL-~~lGl~~~~i~~ll~~~P~lL~~s~-e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~M  195 (335)
T 4fp9_B          119 YL-QKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRM  195 (335)
T ss_dssp             HH-HHTTCTTTTHHHHHHHCGGGGTSCH-HHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTT
T ss_pred             HH-HHcCCCHHHHHHHHHhCchhhccCh-HHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHh
Confidence            88 5799999999999999999999995 57888999985 89999999999999999999999 689999999999999


Q ss_pred             CCcHHHHhhcCceeccCcccchHHHHHHHHHhhcCCCC----C-----CCcccc-cCCHHHHHHHhcCCChHHHHHHHHH
Q 010686          421 HNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKG----P-----FPLSLF-IPTDECFCQKWAGTTVDKYLAFRQK  490 (504)
Q Consensus       421 g~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~~~k~----~-----~~Ls~L-~~sd~~F~~~~~~~s~e~y~~f~~~  490 (504)
                      |+++.+|++ |.+|+||++ ||+|||.||+.+|.+++.    .     .+|..| ..||++||+++|++|+|+|+.|++ 
T Consensus       196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~~F~k-  272 (335)
T 4fp9_B          196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKK-  272 (335)
T ss_dssp             CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHHHHHH-
T ss_pred             CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHHHHHH-
Confidence            999999998 999999998 999999999999986432    1     135555 589999999999999999999986 


Q ss_pred             HhhHHHHHH
Q 010686          491 LLLKDFAKK  499 (504)
Q Consensus       491 l~~~~~~~~  499 (504)
                      +++++..++
T Consensus       273 ~~~~e~~~~  281 (335)
T 4fp9_B          273 LLAREEEES  281 (335)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHhhhhcc
Confidence            666666543

>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*

Probab=100.00  E-value=3e-35  Score=303.24  Aligned_cols=279  Identities=19%  Similarity=0.260  Sum_probs=240.3

Q ss_pred             hhhhhhhhhhcccCCCCCccccccccccchhhhhhhhhhcccCcCCChHHHHHHHHhCCCCHHHHHHHHHhcCCccc-cC
Q 010686          145 RRNTIKNSFDDTYYNSKDVDQRGKVMTRNATENRYQRLSEEIELDEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQ-IN  223 (504)
Q Consensus       145 ~~~~v~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~p~ll~~~~~e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~-~~  223 (504)
                      ...+|+.+|+++|++..++..+         +.+||+++ .++ .+++.|+++||+++|+++++|++++.++|.++. ..
T Consensus        50 ~~~~vl~fL~~~G~s~~~i~~i---------v~~~P~lL-~~~-~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~  118 (343)
T 3mva_O           50 NEQDLKMFLLSKGASKEVIASI---------ISRYPRAI-TRT-PENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSN  118 (343)
T ss_dssp             CHHHHHHHHHHTTCCHHHHHHH---------HHHCGGGG-GCC-HHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCC
T ss_pred             cHHHHHHHHHHcCCCHHHHHHH---------HHhCcHHH-hCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCC
Confidence            3468999999999999999984         78899999 777 467999999999999999999999999999544 44


Q ss_pred             cc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCC------chhhhhHhhhcCcccccccc
Q 010686          224 VC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIP------NSKIGQIIAATPSLFSYSVE  296 (504)
Q Consensus       224 ~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls------~~~I~klL~~~P~lL~~s~e  296 (504)
                      .+ ++.++++||+++|++.+++.+++.++|++|+++++.+ ++++++|+++|++      .+.|.+++.++|.+|+++ +
T Consensus       119 ~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s-~  196 (343)
T 3mva_O          119 NNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQS-T  196 (343)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSC-H
T ss_pred             hHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCC-H
Confidence            43 8999999999999999999999999999999999655 9999999987764      678999999999999999 5


Q ss_pred             cchhHHHHHHHHHhCCChhHHHHHHhhC-ccceeccccccchhhhhhhhh---hcCCCchhHHHhhhccccccccccccc
Q 010686          297 NSLKPTVRYLVEEVGINEKSLGKVVQLS-PQVLVQRIDISWNTRCIFLSK---ELGAPRDDVVKMVTKHPQLLHYSIDDG  372 (504)
Q Consensus       297 ~~l~p~v~fL~~~lGv~~~~l~~vI~~~-P~lL~~~~e~~l~~kv~fL~~---~lG~s~~~v~~ml~~~P~iL~~s~e~~  372 (504)
                      ++++++++||++++|++++++..++... |.++..+.+ .|++++.++.+   ++||+++++..|+.++|++|.+|. ++
T Consensus       197 ~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~  274 (343)
T 3mva_O          197 KRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KK  274 (343)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HH
Confidence            6799999999867999999999998885 588888765 68888877743   799999999999999999999995 56


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHH
Q 010686          373 LLPRINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHR  447 (504)
Q Consensus       373 L~~kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~  447 (504)
                      +++|++||..||++.++|    .++|++|++|+| +|+||+.||.. .|+.+.  ..+-.+|+.| +++..-|+.
T Consensus       275 l~~k~~fl~~mg~~~~~i----~~~P~~l~~sle-ri~~R~~~L~~-~g~~~~--~~~~~~l~~s-~~~F~~~~~  340 (343)
T 3mva_O          275 FNDKIDCLMEENISISQI----IENPRVLDSSIS-TLKSRIKELVN-AGCNLS--TLNITLLSWS-KKRYEAKLK  340 (343)
T ss_dssp             HHHHHHHHHTTTCCHHHH----HHSGGGGGSCHH-HHHHHHHHHHT-TTCCSS--SSCGGGGGSC-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHH----HhCCHHHhcCHH-HHHHHHHHHHH-CCCCCC--CCcchhhcCC-HHHHHHHHh
Confidence            999999998899999985    799999999997 99999999986 476533  1222777777 445554443

>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A

Probab=100.00  E-value=2.5e-34  Score=286.73  Aligned_cols=217  Identities=21%  Similarity=0.347  Sum_probs=203.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHhcCCccccCcc-CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHH
Q 010686          194 PLLDYLSTFGLKESHFIQMYERHMPSLQINVC-SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLIS  272 (504)
Q Consensus       194 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~-~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~  272 (504)
                      ++++||.++|++.++|.+....+|.+|.++++ ++.++++||.++|++.+++++++.++|.+|++++++ ++|+++||++
T Consensus         7 ~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~~   85 (270)
T 3m66_A            7 ETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLHS   85 (270)
T ss_dssp             HHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHHH
Confidence            67999999999999998877777777999986 899999999999999999999999999999999976 9999999999


Q ss_pred             cCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCch
Q 010686          273 LGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRD  352 (504)
Q Consensus       273 lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~  352 (504)
                      +|++.++|++++.++|++|++++++ ++++++||++++|++.+++.+++.++|.+++.+.+ .+++++.++.+++|++.+
T Consensus        86 ~Gls~~~i~~~l~~~P~lL~~s~~~-l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v~~l~~~~G~s~~  163 (270)
T 3m66_A           86 KNFSKADVAQMVRKAPFLLNFSVER-LDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENMKVYRLELGFKHN  163 (270)
T ss_dssp             TTCCHHHHHHHHHHSTTGGGSCHHH-HHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHHHHHHHTSCCCHH
T ss_pred             cCCCHHHHHHHHHhCCHHHcCCHHH-HHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHHHHHHHHcCCCHH
Confidence            9999999999999999999999985 99999999668999999999999999999999987 588999987679999999


Q ss_pred             hHHHhhhccccccccccccchHHHHHHHH-HhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHH
Q 010686          353 DVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINE  419 (504)
Q Consensus       353 ~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~  419 (504)
                      ++..|+.++|++|++|. +++++|++||. +||++.++|    .++|++|++|+| +|+||+.||..-
T Consensus       164 ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i----~~~P~~l~~Sle-ri~pR~~~l~~L  225 (270)
T 3m66_A          164 EIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHII----VKFPQVFNTRLF-KVKERHLFLTYL  225 (270)
T ss_dssp             HHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHH----HHCGGGGGSCHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHH----HhCchHhhCCHH-HHHHHHHHHHHh
Confidence            99999999999999995 89999999996 799999875    799999999997 999999999873

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=99.93  E-value=1.2e-25  Score=230.16  Aligned_cols=182  Identities=19%  Similarity=0.345  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHH
Q 010686          226 SARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRY  305 (504)
Q Consensus       226 ~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~f  305 (504)
                      .++..+.+|..+|+++.+|++++.++|.++.    .++.+++.||..+|++.++|+++|.++|++|+.+++ +|++++.|
T Consensus        45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~----~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~f  119 (335)
T 4fp9_B           45 ELERVMSSLLDMGFSNAHINELLSVRRGASL----QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSY  119 (335)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHCSSCCH----HHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHhCcccch----hHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHH
Confidence            4566677777777777777777777777763    345667777777777777777777777777777776 37777777


Q ss_pred             HHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH-Hhc
Q 010686          306 LVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIG  384 (504)
Q Consensus       306 L~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG  384 (504)
                      |+ .+|++..++.+++.++|++|+++.+ .+..++.+|..++||+.+++..||.++|+||.++ .++|++|++||. .||
T Consensus       120 L~-~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~Mg  196 (335)
T 4fp9_B          120 LQ-KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLRED-LGQLEYKFQYAYFRMG  196 (335)
T ss_dssp             HH-HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSC-HHHHHHHHHHHHTTTC
T ss_pred             HH-HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCC-HHHHHHHHHHHHHHhC
Confidence            76 5777777777777777777777766 4667777776789999999999999999999999 578999999997 899


Q ss_pred             CChHHHHHHHHhccchhccCcccchHHHHHHHHHHhCC
Q 010686          385 MRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHN  422 (504)
Q Consensus       385 ~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~  422 (504)
                      ++..+|.    + |++|+||++ +|+||+.||.. +|.
T Consensus       197 l~~~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~  227 (335)
T 4fp9_B          197 IKHPDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR  227 (335)
T ss_dssp             CCHHHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred             CCHHHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence            9999973    3 999999996 99999999987 454

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.53  E-value=3.4e-13  Score=119.96  Aligned_cols=184  Identities=24%  Similarity=0.405  Sum_probs=140.2

Q ss_pred             HhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhcCCCchhHHHhhhccccccccccccchHHHHHHHH-HhcCCh
Q 010686          309 EVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKELGAPRDDVVKMVTKHPQLLHYSIDDGLLPRINFLR-SIGMRN  387 (504)
Q Consensus       309 ~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~kv~fL~-~lG~s~  387 (504)
                      -+|++++-+.-++.+.|++|...+- .++.+-.+| ..+|+.+..+.+++--+|.|+++. ...+...+..|+ .+-|+.
T Consensus        42 llglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmr-qqdindtvrllkekclftv  118 (239)
T 4fzv_B           42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMR-QQDINDTVRLLKEKCLFTV  118 (239)
T ss_dssp             HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSC-HHHHHHHHHHHHHHSCCCH
T ss_pred             hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHH-HhhHhHHHHHHHHhHHhhH
Confidence            4677776666666677776665543 344555566 366777776666666677777665 456677777775 577888


Q ss_pred             HHHHHHHHhccchhccCcccchHHHHHHHHHHhCCcHHHHhhcCceeccCcccchHHHHHHHHHhhcCC----CC----C
Q 010686          388 SDILKVLRSLTQVLSLSLEDNLKPKYTYLINELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAP----KG----P  459 (504)
Q Consensus       388 ~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~mg~~~~~I~k~P~lL~~SLekrI~PR~~fL~~L~~~~----k~----~  459 (504)
                      .++.+++..||.+|.-++ ..+.-|+.|-.-.||+..-+|++ ..+|.||+. +|+.||-+|..|++.+    +|    |
T Consensus       119 qqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivk-seylqyslt-kikqrhiylerlgryqtpdkkgqtqip  195 (239)
T 4fzv_B          119 QQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIP  195 (239)
T ss_dssp             HHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSC
T ss_pred             HHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhH-HHHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCC
Confidence            888888888999888886 68999999998899999888888 678999997 7999999999998743    22    1


Q ss_pred             CCc-cc-ccCCHHHHHHHhcCCChHHHHHHHHHHhhHHHHHH
Q 010686          460 FPL-SL-FIPTDECFCQKWAGTTVDKYLAFRQKLLLKDFAKK  499 (504)
Q Consensus       460 ~~L-s~-L~~sd~~F~~~~~~~s~e~y~~f~~~l~~~~~~~~  499 (504)
                      .|+ .. +..|+.+|.++-+.+++|+|+.|++ +++++..|.
T Consensus       196 npllkdilrvseaeflartactsveefqvfkk-llareeees  236 (239)
T 4fzv_B          196 NPLLKDILRVSEAEFLARTACTSVEEFQVFKK-LLAREEEES  236 (239)
T ss_dssp             CCCHHHHHTSCHHHHHHHTSCSCHHHHHHHHH-HHHHHHHHH
T ss_pred             ChHHHHHHHHhHHHHHHHHhcccHHHHHHHHH-HHhhhhhhh
Confidence            244 44 4689999999999999999999996 777776653

>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}

Probab=99.03  E-value=4.9e-10  Score=99.73  Aligned_cols=151  Identities=19%  Similarity=0.367  Sum_probs=128.7

Q ss_pred             CCChHHHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHHHCCCChhhHHHHHhhCCcccccCcccchHHHHH
Q 010686          189 DEKWLPLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDVRRILLRQPQILEYTVENNLESHVA  268 (504)
Q Consensus       189 e~~~~~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~slGls~~~l~kil~~~P~lL~~s~e~~L~p~v~  268 (504)
                      .++++.++..|.-+|++++.+..++.+.|+++.....++..+-.||+.+|+....+.+++-++|.|+++.. .++...+.
T Consensus        30 ~qqlldiisefillglnpepvcvvlkkspqllklpimqmrkrssylqklglgegklkrvlyccpeiftmrq-qdindtvr  108 (239)
T 4fzv_B           30 XQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQ-QDINDTVR  108 (239)
T ss_dssp             CCTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHHHHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHHHHHHHHHHHHHhCCCccchhhheecCcHHHHHHH-hhHhHHHH
Confidence            35566889999999999999999999999999999889999999999999999999999999999999998 68999999


Q ss_pred             HHH-HcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhhhhc
Q 010686          269 FLI-SLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLSKEL  347 (504)
Q Consensus       269 fL~-~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~~~l  347 (504)
                      .|+ .+-++..++.+++.+||++|..++. .+.-++.|..-.+|+...++.+-     ..|.++.. .++.+--+| +.+
T Consensus       109 llkekclftvqqvtkilhscpsvlredlg-qleykfqyayfrmgikhpdivks-----eylqyslt-kikqrhiyl-erl  180 (239)
T 4fzv_B          109 LLKEKCLFTVQQVTKILHSCPSVLREDLG-QLEYKFQYAYFRMGIKHPDIVKS-----EYLQYSLT-KIKQRHIYL-ERL  180 (239)
T ss_dssp             HHHHHSCCCHHHHHHHHHHCGGGGTSCTT-HHHHHHHHHHHTSCCCHHHHHHT-----TGGGSCHH-HHHHHHHHH-HHH
T ss_pred             HHHHhHHhhHHHHHHHHHhCcHHHHHHHh-hhhhhHhHHHHHccCCCcchhHH-----HHHHHHHH-HHHHHHhHH-HHh
Confidence            998 5889999999999999999999987 48888888776899998887652     33334443 355555566 466


Q ss_pred             C
Q 010686          348 G  348 (504)
Q Consensus       348 G  348 (504)
                      |
T Consensus       181 g  181 (239)
T 4fzv_B          181 G  181 (239)
T ss_dssp             T
T ss_pred             c
Confidence            6

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=86.60  E-value=0.17  Score=51.19  Aligned_cols=10  Identities=20%  Similarity=0.398  Sum_probs=4.7

Q ss_pred             ceEEEeeccc
Q 010686           31 RFVVLSTHSN   40 (504)
Q Consensus        31 ~~~~~~~~~~   40 (504)
                      ....+.+..|
T Consensus       304 ~L~~L~l~~N  313 (386)
T 2ca6_A          304 DLLFLELNGN  313 (386)
T ss_dssp             TCCEEECTTS
T ss_pred             CceEEEccCC
Confidence            3444555444

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=82.00  E-value=8.8  Score=32.74  Aligned_cols=101  Identities=15%  Similarity=0.105  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhCCChhHHHHHHhhCccceeccccccchhhhhhhh-----hhcCCCchhHHHhhhccccccccccccchHH
Q 010686          301 PTVRYLVEEVGINEKSLGKVVQLSPQVLVQRIDISWNTRCIFLS-----KELGAPRDDVVKMVTKHPQLLHYSIDDGLLP  375 (504)
Q Consensus       301 p~v~fL~~~lGv~~~~l~~vI~~~P~lL~~~~e~~l~~kv~fL~-----~~lG~s~~~v~~ml~~~P~iL~~s~e~~L~~  375 (504)
                      ..|..|. ++||+...+.+.+..+-.        ..+.-++||.     .+.|++...+...+..+..--..  .....+
T Consensus        10 ~~v~~l~-~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~--~~~~~~   78 (118)
T 4ae4_A           10 QCVETVV-NMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK--MMEFLQ   78 (118)
T ss_dssp             HHHHHHH-HTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH--HHHHHH
T ss_pred             HHHHHHH-HcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc--cccCHH
Confidence            3555564 677777777766654311        2333344443     24566665554444322110000  011235


Q ss_pred             HHHHHHHhcCChHHHHHHHHhccchhccCcccchHHHHHHHHHHh
Q 010686          376 RINFLRSIGMRNSDILKVLRSLTQVLSLSLEDNLKPKYTYLINEL  420 (504)
Q Consensus       376 kv~fL~~lG~s~~ev~~~v~r~P~iL~~SlE~~L~pk~~fL~~~m  420 (504)
                      .+.-|.+|||+.+.+...++.+        .+.+..-+++|....
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~--------~nd~erAlewL~~~~  115 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLH--------NNDQDNALEDLMARA  115 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHT--------TTCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHhc
Confidence            6777888999999998888776        566777777776643

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=81.06  E-value=18  Score=30.76  Aligned_cols=97  Identities=12%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHhcCCccccCccCHHHHHHHHH------HCCCChhhHHHHHhhCCcccccCcc--cchHH
Q 010686          194 PLLDYLSTFGLKESHFIQMYERHMPSLQINVCSARERLEYLL------SVGVKQRDVRRILLRQPQILEYTVE--NNLES  265 (504)
Q Consensus       194 ~vl~fL~slG~s~~~I~~il~r~P~lL~~~~~~l~~~l~fL~------slGls~~~l~kil~~~P~lL~~s~e--~~L~p  265 (504)
                      ..++-|.++||+...+.+.+...       ..++...++||.      ..|++...+...+..+.    .+..  ..-..
T Consensus        10 ~~v~~l~~MGFp~~~~~kAl~~~-------g~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~----~~~~~~~~~~~   78 (118)
T 4ae4_A           10 QCVETVVNMGYSYECVLRAMKAA-------GANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQ----CSEEKMMEFLQ   78 (118)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHH-------CSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCS----SCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHH-------CcCHHHHHHHHHHhchhcccCCChhhhHHHHHhcc----CCccccccCHH
Confidence            45888999999999999988763       125666677764      34677777776665432    1111  11123


Q ss_pred             HHHHHHHcCCCchhhhhHhhhcCcccccccccchhHHHHHHHHH
Q 010686          266 HVAFLISLGIPNSKIGQIIAATPSLFSYSVENSLKPTVRYLVEE  309 (504)
Q Consensus       266 ~v~fL~~lGls~~~I~klL~~~P~lL~~s~e~~l~p~v~fL~~~  309 (504)
                      .+.-|.++|++.+.+.+.|..+.        +++...++||...
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~~  114 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMAR  114 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHHh
Confidence            46677788888888888876642        3466677777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00