Citrus Sinensis ID: 010719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500---
Protein Sequence
MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAfdeakdgprkpslvlyydadfggeplnfrDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCltggkevhHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKllsygdspevhaqKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG
Flexible Loop (DISEMBL)
MSSWWRNAVNKAvevgnknnltRTVKNYADNVVHQAGQAVAEGAkilqdrigvrsfksvnqTIRRLeeaalscrgpervMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAfdeakdgprkpSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTaitglkmnsdiERIDAEASDLKKRLEGMKAlqnssnedleqasEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKvlseslsnssvkaekrisdhrsqkeealkvrvvkanessekekeigAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG
Low Complexity Region (SEG)
MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGlllkkkllSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVnlslaaaqarlrnaqeereqFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG
Disordered region (IsUnstruct)
***WWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLS***********************SLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKM*******************************************IEALKEALAQIRVCTRLEGLLLKKKLLSYG********************************************************************************************************************DELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFV*********
Disordered Region (DISOPRED)
********VN*****GNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKE*********************************LVLYYDADFGGEPLNFRDVFLQSQALEAITVSMIL******EISLLLEMFGLCLTGGKEVHHAITSSIQDLA********************************DIERIDAEAS********************************************************************************************************************************************************************************************VESDVLSTWINFLEDSW********************HEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNL***
Disordered Region (DISEMBL)
MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKAL***************TKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSES******************KEEALKVRV***********EIGAEISELVKQRDHLEAELKKVNLSLAAAQA************DEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG
Disordered Region (DISPRO)
******************NNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYG**********************PRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQ***********EKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRWLTVxxxxxxxxxxxxxxxxxxxxxxxxxxxxKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDxxxxxxxxxxxxxxxxxxxxxQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
297736434	680	unnamed protein product [Vitis vinifera]	0.996	0.736	0.746	0.0
359486438	699	PREDICTED: uncharacterized protein LOC10	0.996	0.716	0.719	0.0
217074440	682	unknown [Medicago truncatula]	0.996	0.734	0.727	0.0
255571703	683	conserved hypothetical protein [Ricinus	0.988	0.727	0.736	0.0
356536514	682	PREDICTED: uncharacterized protein LOC10	0.996	0.734	0.719	0.0
449451681	676	PREDICTED: uncharacterized protein LOC10	0.990	0.736	0.712	0.0
356576857	677	PREDICTED: uncharacterized protein LOC10	0.994	0.738	0.712	0.0
30684467	679	uncharacterized protein [Arabidopsis tha	0.982	0.727	0.671	0.0
297811469	679	hypothetical protein ARALYDRAFT_909308 [	0.978	0.724	0.664	0.0
343172732	643	hypothetical protein, partial [Silene la	0.994	0.777	0.660	0.0

>gi|297736434|emb|CBI25305.3| unnamed protein product [Vitis vinifera]

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/501 (74%), Positives = 429/501 (85%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW R+AV+KAVEVGNKNNLTRTVKNYAD+VV  AGQAVAEGAKILQDRIG RS++S   T
Sbjct: 2   SWLRSAVSKAVEVGNKNNLTRTVKNYADSVVQHAGQAVAEGAKILQDRIGARSYRSFRLT 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
           ++RLEEAA+SCRGPER+ LL+RWL VLKE+EKL G   EDKEK  EQ    DEA+D P+K
Sbjct: 62  VKRLEEAAVSCRGPERIQLLKRWLAVLKEIEKLSGAPFEDKEKNSEQQATTDEARDNPKK 121

Query: 123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
            S+VLYYD+D GG P+NFRDVFL SQALE IT+SMILEAPNEEE+SLLLEMF LCLTGGK
Sbjct: 122 SSMVLYYDSDMGGGPVNFRDVFLHSQALEGITLSMILEAPNEEEVSLLLEMFELCLTGGK 181

Query: 183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
           EVH+AI SSIQDL  A S+Y+DEVLVKREELLQFAQ AITGLK+N+D+ RID EAS LKK
Sbjct: 182 EVHNAIVSSIQDLGKAFSRYEDEVLVKREELLQFAQGAITGLKINADLRRIDTEASSLKK 241

Query: 243 RLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSP 302
           +L+GM      S+E   + SE+TT ATIEALKEAL QIRVC+RLEGLLLKKK L+ GDSP
Sbjct: 242 KLDGMSLSGKPSSEGHLETSEETTVATIEALKEALVQIRVCSRLEGLLLKKKFLNSGDSP 301

Query: 303 EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEI 362
           EVHAQKVDKLKVLSESL+NSS KAEKRI+DHRSQKEEALK RV KA+E SE EK++  EI
Sbjct: 302 EVHAQKVDKLKVLSESLANSSTKAEKRIADHRSQKEEALKFRVSKASEVSEVEKDLITEI 361

Query: 363 SELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422
             L KQRD LEAELK+VN+SLAAA  RL N +EER QFDEA++QIV HLKTKEDELLK+I
Sbjct: 362 EGLQKQRDELEAELKRVNISLAAANVRLHNMREERSQFDEASNQIVTHLKTKEDELLKTI 421

Query: 423 AACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKE 482
           A+ +VE+DVL+TWINFLED+WVLQCS  ++KEKQV +EL +HEDYFV+LAI LLS+YKKE
Sbjct: 422 ASSKVEADVLNTWINFLEDTWVLQCSYADIKEKQVDDELEEHEDYFVHLAIGLLSSYKKE 481

Query: 483 LGPSISRIGKFVENLKNLSEG 503
           L PSISRIGKFVENLK+LS+G
Sbjct: 482 LEPSISRIGKFVENLKSLSQG 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486438|ref|XP_002275939.2| PREDICTED: uncharacterized protein LOC100244989 [Vitis vinifera]

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/520 (71%), Positives = 429/520 (82%), Gaps = 19/520 (3%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW R+AV+KAVEVGNKNNLTRTVKNYAD+VV  AGQAVAEGAKILQDRIG RS++S   T
Sbjct: 2   SWLRSAVSKAVEVGNKNNLTRTVKNYADSVVQHAGQAVAEGAKILQDRIGARSYRSFRLT 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
           ++RLEEAA+SCRGPER+ LL+RWL VLKE+EKL G   EDKEK  EQ    DEA+D P+K
Sbjct: 62  VKRLEEAAVSCRGPERIQLLKRWLAVLKEIEKLSGAPFEDKEKNSEQQATTDEARDNPKK 121

Query: 123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
            S+VLYYD+D GG P+NFRDVFL SQALE IT+SMILEAPNEEE+SLLLEMF LCLTGGK
Sbjct: 122 SSMVLYYDSDMGGGPVNFRDVFLHSQALEGITLSMILEAPNEEEVSLLLEMFELCLTGGK 181

Query: 183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
           EVH+AI SSIQDL  A S+Y+DEVLVKREELLQFAQ AITGLK+N+D+ RID EAS LKK
Sbjct: 182 EVHNAIVSSIQDLGKAFSRYEDEVLVKREELLQFAQGAITGLKINADLRRIDTEASSLKK 241

Query: 243 RLEGMKALQNSSNEDLEQASEKTTKATIE-------------------ALKEALAQIRVC 283
           +L+GM      S+E   + SE+TT ATIE                   ALKEAL QIRVC
Sbjct: 242 KLDGMSLSGKPSSEGHLETSEETTVATIEPGIKWKGKNMNLITQFFQQALKEALVQIRVC 301

Query: 284 TRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKV 343
           +RLEGLLLKKK L+ GDSPEVHAQKVDKLKVLSESL+NSS KAEKRI+DHRSQKEEALK 
Sbjct: 302 SRLEGLLLKKKFLNSGDSPEVHAQKVDKLKVLSESLANSSTKAEKRIADHRSQKEEALKF 361

Query: 344 RVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEA 403
           RV KA+E SE EK++  EI  L KQRD LEAELK+VN+SLAAA  RL N +EER QFDEA
Sbjct: 362 RVSKASEVSEVEKDLITEIEGLQKQRDELEAELKRVNISLAAANVRLHNMREERSQFDEA 421

Query: 404 NDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVK 463
           ++QIV HLKTKEDELLK+IA+ +VE+DVL+TWINFLED+WVLQCS  ++KEKQV +EL +
Sbjct: 422 SNQIVTHLKTKEDELLKTIASSKVEADVLNTWINFLEDTWVLQCSYADIKEKQVDDELEE 481

Query: 464 HEDYFVNLAISLLSAYKKELGPSISRIGKFVENLKNLSEG 503
           HEDYFV+LAI LLS+YKKEL PSISRIGKFVENLK+LS+G
Sbjct: 482 HEDYFVHLAIGLLSSYKKELEPSISRIGKFVENLKSLSQG 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074440|gb|ACJ85580.1| unknown [Medicago truncatula]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/502 (72%), Positives = 425/502 (84%), Gaps = 1/502 (0%)

Query: 1   MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVN 60
           MSSW R+AVNKAVEVGNKNNLT TVK YAD VV  AGQAVAEGAKIL DRI  R+++SV 
Sbjct: 1   MSSWLRSAVNKAVEVGNKNNLTNTVKKYADTVVQHAGQAVAEGAKILHDRISARNYRSVA 60

Query: 61  QTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGP 120
           QT++RLEEAA+S RGPERV LLRRWL VLKE+E L G  +E KEK  EQ  A ++ K+ P
Sbjct: 61  QTVKRLEEAAISHRGPERVQLLRRWLVVLKEIENLSGASAEGKEKTLEQHLAVEDIKENP 120

Query: 121 RKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTG 180
           ++PSLVLYYD+D GGEPLNFRDVFLQSQALE IT+SMI+EAPNEEE+SLLLEMFGLCLTG
Sbjct: 121 QRPSLVLYYDSDVGGEPLNFRDVFLQSQALEGITLSMIIEAPNEEEVSLLLEMFGLCLTG 180

Query: 181 GKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDL 240
            KEVH+AI SS+QDLATA S YQDEVLVKREELLQFAQ AITGLK+NSD+ RIDAEAS L
Sbjct: 181 RKEVHNAIVSSLQDLATAFSSYQDEVLVKREELLQFAQRAITGLKINSDLARIDAEASSL 240

Query: 241 KKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGD 300
           +K+L  +   Q   N+   +A+E+ T+AT++ALK AL QIR+C+RLEGLLLKKK +S GD
Sbjct: 241 RKKLSEITTSQGVVNKVDYKAAEE-TEATLKALKVALGQIRICSRLEGLLLKKKNISNGD 299

Query: 301 SPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGA 360
           SPEVHAQKVDKLKVL+ESL NS+ KAEKRISD+R QKEEALKVRV K  E+SEKEKE+ A
Sbjct: 300 SPEVHAQKVDKLKVLTESLVNSAAKAEKRISDNRQQKEEALKVRVTKGGETSEKEKELTA 359

Query: 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420
           EISEL +++D LEAELKK+N SLAAAQARL N +EER+QF+EAN+QIVEHLK KEDEL K
Sbjct: 360 EISELQQKKDDLEAELKKINTSLAAAQARLWNVREERDQFEEANNQIVEHLKIKEDELTK 419

Query: 421 SIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYK 480
           SI++CRVESDV+ TWINFLED+WVLQ S  E+ EKQVS+EL +HEDYFVNLAI LL+ Y+
Sbjct: 420 SISSCRVESDVIKTWINFLEDTWVLQQSNTEIYEKQVSDELERHEDYFVNLAIQLLTTYQ 479

Query: 481 KELGPSISRIGKFVENLKNLSE 502
           KEL P I+ IG FV NLKNL++
Sbjct: 480 KELEPCINHIGTFVVNLKNLTQ 501

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571703|ref|XP_002526795.1| conserved hypothetical protein [Ricinus communis] gi|223533871|gb|EEF35601.1| conserved hypothetical protein [Ricinus communis]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/505 (73%), Positives = 434/505 (85%), Gaps = 8/505 (1%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW R+AVNKAVEVGNKNNLTR VKNYAD+VVHQAGQAVAEGAKILQDRIG R++KSV QT
Sbjct: 2   SWLRSAVNKAVEVGNKNNLTRAVKNYADSVVHQAGQAVAEGAKILQDRIGNRNYKSVKQT 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKL----YGLLSEDKEKLQEQLDAFDEAKD 118
           I+RLEEAA++CRGPERVMLL+RWL VL EVEKL        S+ K++  EQ    ++ K+
Sbjct: 62  IKRLEEAAVTCRGPERVMLLKRWLLVLNEVEKLSVAAAAASSDYKQRTLEQHLFPEDGKE 121

Query: 119 GPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCL 178
            PR+ S+VLYYD+D GGEP+NF DVFLQSQALE IT+SMILE PN+EEISLLL +FG+CL
Sbjct: 122 SPRRQSMVLYYDSDIGGEPMNFCDVFLQSQALEGITLSMILEPPNDEEISLLLVIFGICL 181

Query: 179 TGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEAS 238
           TGGKEVH+AI SSIQDLATA   YQDEVLVKREELLQFAQ A+TGLK+++D+ RI+AEA+
Sbjct: 182 TGGKEVHNAIVSSIQDLATAFRSYQDEVLVKREELLQFAQGAVTGLKISADLGRINAEAT 241

Query: 239 DLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSY 298
           DLK +LE + + +  S+E      + T KA IE LKEALAQIR+C+RL+GLLLKKK LS+
Sbjct: 242 DLKNKLEAIISSKKPSSE----VPDGTAKANIEVLKEALAQIRICSRLQGLLLKKKNLSF 297

Query: 299 GDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEI 358
           GDSPEVHAQKVDKLKVLSESL++S+ KAEKRI DHR QKEEALKVRV KA+E++EKEKEI
Sbjct: 298 GDSPEVHAQKVDKLKVLSESLASSASKAEKRILDHRIQKEEALKVRVAKADEANEKEKEI 357

Query: 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418
            AEI  L KQRD LEA+LKKVN+SLAAA ARL NA+EER+QFDEAN+QI+EHLKTKEDEL
Sbjct: 358 SAEIVVLEKQRDELEAQLKKVNISLAAANARLHNAREERDQFDEANNQIIEHLKTKEDEL 417

Query: 419 LKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSA 478
            KSIAAC+VE+DV+STWINFLED+WVLQ S  E+KEKQV++EL +HEDYF+NLAI LLS 
Sbjct: 418 SKSIAACKVEADVISTWINFLEDTWVLQRSYTEMKEKQVNDELERHEDYFMNLAIRLLSD 477

Query: 479 YKKELGPSISRIGKFVENLKNLSEG 503
           YKKELGP+ISRIGKFVENLK LSEG
Sbjct: 478 YKKELGPAISRIGKFVENLKKLSEG 502

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536514|ref|XP_003536782.1| PREDICTED: uncharacterized protein LOC100778459 [Glycine max]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/503 (71%), Positives = 426/503 (84%), Gaps = 2/503 (0%)

Query: 1   MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVN 60
           MSSW R+AVNKAVEVGNKNNLTRTVKNYAD VV  AGQAVAEGAKILQDRI  R+++SV 
Sbjct: 1   MSSWLRSAVNKAVEVGNKNNLTRTVKNYADTVVQHAGQAVAEGAKILQDRISARNYRSVA 60

Query: 61  QTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLY-GLLSEDKEKLQEQLDAFDEAKDG 119
           QTI+RLEEAA+S RGPERV LLRRW+ VL+E++KL    L+E KE+  EQ  A +EAK+ 
Sbjct: 61  QTIKRLEEAAVSYRGPERVQLLRRWVVVLQEIQKLSEASLAEGKERTLEQHLAVEEAKEN 120

Query: 120 PRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLT 179
           PRKPSLVLYYD+D GGEPLNFRDVFLQSQALE IT+SMI+ APNEEE+SLLLEMFGLCLT
Sbjct: 121 PRKPSLVLYYDSDVGGEPLNFRDVFLQSQALEGITLSMIIHAPNEEEVSLLLEMFGLCLT 180

Query: 180 GGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASD 239
           GGKEVH+AI SS+QDLATA S Y+DEVLVK+EELLQFAQ AITGLK+NSD  RIDAEAS+
Sbjct: 181 GGKEVHNAIVSSLQDLATAFSSYEDEVLVKQEELLQFAQGAITGLKINSDASRIDAEASN 240

Query: 240 LKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYG 299
           LKK+L  +   Q   ++   +A+E+T  AT+EALK ALAQIR+C+RLE LLLKKK LS G
Sbjct: 241 LKKKLTEITTSQGPVSKVDYKAAEETI-ATLEALKIALAQIRICSRLEALLLKKKNLSNG 299

Query: 300 DSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIG 359
           DSPE+HAQKVDKLKVL+ESL+NS+ KAEKRI D+R QKEEALKVRV K  E+SEKEKE+ 
Sbjct: 300 DSPEIHAQKVDKLKVLTESLANSATKAEKRILDNRLQKEEALKVRVTKDGEASEKEKELV 359

Query: 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELL 419
            EISEL  +++ LEAELKKV+ +LAAAQARL N +EER+QF+EAN+QIVEHLK KEDEL 
Sbjct: 360 TEISELQCKKEDLEAELKKVSTTLAAAQARLWNVREERDQFEEANNQIVEHLKIKEDELS 419

Query: 420 KSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAY 479
           KSI++CRVE+DV+ TWINFLED+WVLQ S  E+ +KQV++EL +HEDYFVNLAI LL+ Y
Sbjct: 420 KSISSCRVEADVIKTWINFLEDTWVLQWSNAEINDKQVNDELERHEDYFVNLAIQLLTTY 479

Query: 480 KKELGPSISRIGKFVENLKNLSE 502
           +KEL P I+ I  FV NLKNLS+
Sbjct: 480 QKELEPCINHIKTFVVNLKNLSQ 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451681|ref|XP_004143590.1| PREDICTED: uncharacterized protein LOC101219173 [Cucumis sativus]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/498 (71%), Positives = 420/498 (84%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW + AV+KAVEVGN NNLTR VKNYAD VVH AGQAVAEGAKILQDRIG R+ +S+ QT
Sbjct: 2   SWIKLAVSKAVEVGNNNNLTRVVKNYADTVVHHAGQAVAEGAKILQDRIGARNLRSIKQT 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
           I+RLEEAA+SCRGPER  LL+RWL VLKEV+KL    SE+K K  EQ   F++AK+ PRK
Sbjct: 62  IQRLEEAAVSCRGPERAQLLKRWLVVLKEVKKLSDASSEEKAKTLEQHLGFEDAKESPRK 121

Query: 123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
           P++VLYYD D GGEP+NF DVFLQSQALE IT+SMILEAPNEEE+SLLL+MFGLCL GGK
Sbjct: 122 PAIVLYYDPDVGGEPMNFCDVFLQSQALEGITLSMILEAPNEEEVSLLLDMFGLCLVGGK 181

Query: 183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
           EVH+AI SSIQDLA + S Y+DEVLVKREELLQFAQ+AI+GLK+++D+ R+D E S+LK 
Sbjct: 182 EVHNAIVSSIQDLAKSFSSYEDEVLVKREELLQFAQSAISGLKISADLGRVDTELSNLKT 241

Query: 243 RLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSP 302
           +LEGM     SSN D  Q SE+TT  TIEALK AL+ IR+C+R+EGLLLKKKLL+ GDSP
Sbjct: 242 KLEGMSGSPMSSNADSGQMSEETTIETIEALKAALSHIRICSRVEGLLLKKKLLNNGDSP 301

Query: 303 EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEI 362
           E+HAQK+DKLKVLSESLSNSSVKAE+RI+DHR+QKEEAL VR  KA+ES EKEKE+ AEI
Sbjct: 302 EIHAQKIDKLKVLSESLSNSSVKAERRITDHRTQKEEALNVRFTKASESGEKEKELAAEI 361

Query: 363 SELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI 422
           + L +QRD +E +L+KVN+SLAAA ARLRN  EER+QF+EAN++IV H+KT+EDEL KSI
Sbjct: 362 AGLERQRDDIEDQLRKVNISLAAAHARLRNMVEERDQFEEANNKIVAHIKTREDELFKSI 421

Query: 423 AACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKE 482
           A+C+ ES+VL+ WINFLED+W +QC   E KEK+V++ L KHE YFVNLAI LLSAYKKE
Sbjct: 422 ASCKAESNVLNIWINFLEDTWNIQCLYRENKEKEVNDALEKHEGYFVNLAIDLLSAYKKE 481

Query: 483 LGPSISRIGKFVENLKNL 500
           L PSISRI KFVENL NL
Sbjct: 482 LEPSISRIEKFVENLMNL 499

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576857|ref|XP_003556546.1| PREDICTED: uncharacterized protein LOC100803121 [Glycine max]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/504 (71%), Positives = 422/504 (83%), Gaps = 4/504 (0%)

Query: 1   MSSWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVN 60
           MSSW R+AV+KAVEVGNKNNLTRTVKNYAD VV  AGQAVAEGAKILQDRI  R+++SV 
Sbjct: 1   MSSWLRSAVHKAVEVGNKNNLTRTVKNYADTVVQHAGQAVAEGAKILQDRISARNYRSVA 60

Query: 61  QTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLS-EDKEKLQEQLDAFDEAKDG 119
           QTI+RLEEAA+S RGPERV LLRRW+ VL+E++KL    S E KE+  EQ  A +EAK+ 
Sbjct: 61  QTIKRLEEAAVSYRGPERVQLLRRWVVVLQEIQKLSESSSAEGKERTLEQHLAVEEAKEN 120

Query: 120 PRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLT 179
           PRKPSLVLYYD+D GGEPLNFRDVFLQSQALE IT+SMI++APNEEE+SLLLEMFGLCLT
Sbjct: 121 PRKPSLVLYYDSDVGGEPLNFRDVFLQSQALEGITLSMIIQAPNEEEVSLLLEMFGLCLT 180

Query: 180 GGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASD 239
           GGKEVH+AI SS+QDLATA S Y+DEVLVKREELLQFAQ AITGLK+NSD  RIDAEA  
Sbjct: 181 GGKEVHNAIVSSLQDLATAFSSYEDEVLVKREELLQFAQGAITGLKINSDAARIDAEAFS 240

Query: 240 LKKRLEGMKALQNS-SNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSY 298
           LKK+L  +   Q   SN D + A E  T A +EA K ALAQIR+C+RLE LLLKKK  S 
Sbjct: 241 LKKKLTEITTSQGPVSNVDYKAAEE--TIAMLEAFKIALAQIRICSRLEALLLKKKNSSN 298

Query: 299 GDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEI 358
           G+SPE+HAQKVDKLKVL+ESL+NS+ KAEKRI D+R QKEEALKVRV K  E+S+KEKE+
Sbjct: 299 GESPEIHAQKVDKLKVLTESLANSAAKAEKRILDNRLQKEEALKVRVTKDGEASKKEKEL 358

Query: 359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418
            AEISEL  +++ LE ELKKV+ +LAAAQARL N +EER+QF+EAN+QIVEHLK KEDEL
Sbjct: 359 VAEISELQCKKEDLEPELKKVSTTLAAAQARLWNVREERDQFEEANNQIVEHLKIKEDEL 418

Query: 419 LKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSA 478
            KS+++CRVE+DV+ TWINFLED+WVLQ S  E+ +KQV+++L +HEDYFVNLAI LL+ 
Sbjct: 419 SKSVSSCRVEADVIKTWINFLEDTWVLQRSNAEMNDKQVNDDLERHEDYFVNLAIQLLTT 478

Query: 479 YKKELGPSISRIGKFVENLKNLSE 502
           Y+KELGP I+ IG FV NLKNLS+
Sbjct: 479 YQKELGPCINHIGTFVVNLKNLSQ 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684467|ref|NP_196860.2| uncharacterized protein [Arabidopsis thaliana] gi|26450805|dbj|BAC42511.1| unknown protein [Arabidopsis thaliana] gi|29029006|gb|AAO64882.1| At5g13560 [Arabidopsis thaliana] gi|332004528|gb|AED91911.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/502 (67%), Positives = 412/502 (82%), Gaps = 8/502 (1%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW R AVNKAVEVGN+ N+TRTVKNYAD+VV  AGQAVAEGAK+ QDRIGV ++KSV+QT
Sbjct: 2   SWLRTAVNKAVEVGNRKNITRTVKNYADSVVQHAGQAVAEGAKLFQDRIGVGAYKSVHQT 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
           I+RLEEAA+S RG ER +L+ RWL+VLKE+++      +DK+   E+  A DEAK    K
Sbjct: 62  IQRLEEAAVSYRGQERALLITRWLSVLKEIDRATDSSLKDKQLSSEEQLASDEAK----K 117

Query: 123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
              VLYYD D GGEPLNFRDVFLQSQALE I +SMI+E P++EEI+LLLEMFGLCL GGK
Sbjct: 118 REWVLYYDPDIGGEPLNFRDVFLQSQALEGIVLSMIIEPPHDEEITLLLEMFGLCLNGGK 177

Query: 183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
           EVH AI SS+QDLAT  S Y+DEVLVK++ELLQFAQ AITGLK+N+++ RIDAEASDL+K
Sbjct: 178 EVHDAIVSSMQDLATVFSSYKDEVLVKQDELLQFAQNAITGLKINAEMLRIDAEASDLRK 237

Query: 243 RLEGMKALQ-NSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDS 301
           +LE M A Q    +ED E    K T  TIEA KE LA+IR+C+RLEGLL++K+ LS GDS
Sbjct: 238 KLEKMNASQIPQESEDKEH---KETPLTIEAFKETLAKIRLCSRLEGLLIRKRQLSNGDS 294

Query: 302 PEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAE 361
           P++HAQKVDKL+VL ESL+NS+ KAEKRIS++R QKEEALK RVVKANE+ EKEKE+GAE
Sbjct: 295 PDIHAQKVDKLRVLLESLANSTSKAEKRISENRLQKEEALKARVVKANETGEKEKELGAE 354

Query: 362 ISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKS 421
           I++L KQRD LEA+LK+VNLSLAAAQAR RNA EER+QF EAN+QI+ HLKTK+D+L KS
Sbjct: 355 IAQLEKQRDELEADLKRVNLSLAAAQARFRNATEERDQFGEANNQIIAHLKTKDDDLSKS 414

Query: 422 IAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKK 481
           + AC+ E++V+ TWINFLED+W+LQCS +E K+KQ  +EL KHEDYF ++A+++LS YKK
Sbjct: 415 VVACKKEAEVIKTWINFLEDTWLLQCSHIETKDKQTLDELEKHEDYFSDVALNILSVYKK 474

Query: 482 ELGPSISRIGKFVENLKNLSEG 503
           E+ P ISRI  +VENLKNL  G
Sbjct: 475 EVAPLISRIENYVENLKNLGPG 496

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811469|ref|XP_002873618.1| hypothetical protein ARALYDRAFT_909308 [Arabidopsis lyrata subsp. lyrata] gi|297319455|gb|EFH49877.1| hypothetical protein ARALYDRAFT_909308 [Arabidopsis lyrata subsp. lyrata]

 Score =  665 bits (1715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/504 (66%), Positives = 413/504 (81%), Gaps = 12/504 (2%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW R AV+KAVEVGN+ N+TRTVKNYAD+VV QAGQAVAEGAK+ QDRIGV ++KSVNQT
Sbjct: 2   SWLRTAVSKAVEVGNRKNITRTVKNYADSVVQQAGQAVAEGAKLFQDRIGVGAYKSVNQT 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
           I+RLEEAA+S RG ER +L+ RWL VLKE+++      +DK+   E+  A DEAK    K
Sbjct: 62  IQRLEEAAVSYRGHERALLITRWLNVLKEIDRATDSSLKDKQLSSEEQLASDEAK----K 117

Query: 123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
              VLYYD D GGEPLNFRDVFLQSQALE I +SMI+E P++EEI+LLLEMFGLCL GGK
Sbjct: 118 REWVLYYDPDIGGEPLNFRDVFLQSQALEGIVLSMIIEPPHDEEITLLLEMFGLCLNGGK 177

Query: 183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
           EVH AI SS+QDLAT  S Y+DEVLVK++ELLQFAQ AITGLK+N+++ RIDAEASDL+K
Sbjct: 178 EVHDAIVSSMQDLATVFSSYKDEVLVKQDELLQFAQNAITGLKINAEMLRIDAEASDLRK 237

Query: 243 RLEGMKA---LQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYG 299
           +LE M A    Q + +++L++A       TIEA KE LA+IR+C+RLEGLL++K+ LS G
Sbjct: 238 KLEKMNASPIPQETEDKELKEAP-----LTIEAFKETLAKIRLCSRLEGLLIRKRQLSNG 292

Query: 300 DSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIG 359
           DSP++HAQKVDKL+VL ESL+NS+ KAEKRIS++R QKEEALK RVVKANE+ EKEKE+G
Sbjct: 293 DSPDIHAQKVDKLRVLLESLANSTSKAEKRISENRLQKEEALKARVVKANETGEKEKELG 352

Query: 360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELL 419
           AEI++L KQR+ LEAELK+VN+SLAAAQAR RNA EER+QF EAN+QI+ HLKTKED+L 
Sbjct: 353 AEIAQLEKQREELEAELKRVNISLAAAQARFRNATEERDQFGEANNQIIAHLKTKEDDLS 412

Query: 420 KSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAY 479
           KS+ AC+ E++V+ TWINFLED+W+LQCS +E K+KQ  +EL KHEDYF ++A ++LS Y
Sbjct: 413 KSVVACKNEAEVIKTWINFLEDTWLLQCSYIETKDKQTLDELEKHEDYFSDVAFNILSVY 472

Query: 480 KKELGPSISRIGKFVENLKNLSEG 503
           KKE+ P ISRI  +VENLKNL  G
Sbjct: 473 KKEVAPLISRIENYVENLKNLGPG 496

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172732|gb|AEL99069.1| hypothetical protein, partial [Silene latifolia]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/503 (66%), Positives = 410/503 (81%), Gaps = 3/503 (0%)

Query: 3   SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
           SW R AVNKAVEVGNKNN+TRTVKNYAD+VV QAGQAVAEGAK+LQDRI  R+ KS    
Sbjct: 2   SWLRTAVNKAVEVGNKNNITRTVKNYADSVVLQAGQAVAEGAKLLQDRIVPRNHKSFKHA 61

Query: 63  IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDK-EKLQEQLDAFDEAKDGPR 121
           ++RLEEA++SCRGPERV LLRRW T+LKE+E++ G  SE+    L++ LD+ DE KD  +
Sbjct: 62  VKRLEEASVSCRGPERVQLLRRWFTLLKEIERISGNSSEEHVMTLEQHLDS-DEVKDNTK 120

Query: 122 KPSL-VLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTG 180
           KPSL VL+YD+D   EP+NFRDVFL SQALE IT+SMILEAP+EEE+SLL EMFGLCLTG
Sbjct: 121 KPSLEVLFYDSDDQSEPMNFRDVFLHSQALEGITLSMILEAPSEEEVSLLFEMFGLCLTG 180

Query: 181 GKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDL 240
           GKEVHHA+ SSIQDLA   S Y+DEVLVKREELLQFAQ AI+GLK+++++ R+D +AS L
Sbjct: 181 GKEVHHALVSSIQDLAQVFSSYEDEVLVKREELLQFAQGAISGLKISAELLRVDNKASSL 240

Query: 241 KKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGD 300
           KK+L+ ++     S +  E++  K    TIE LK+ALA+IR+C+ LEGLLLKK+ L  GD
Sbjct: 241 KKKLDEIRISLGHSGDGSEKSEIKYKNETIEGLKQALAEIRICSTLEGLLLKKQSLYSGD 300

Query: 301 SPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGA 360
           +P+VHAQK+DKLKVLSESL+NS+ K+EKRISD R+Q+EEALK RV K +E S  EKEIGA
Sbjct: 301 TPDVHAQKIDKLKVLSESLANSAAKSEKRISDTRTQREEALKFRVSKESEVSGMEKEIGA 360

Query: 361 EISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420
           E++ L KQRD LEA+LKKVN+SL A++ RL+ A+EE++QFDEAN+QI+EHLKTKE+EL +
Sbjct: 361 EVAALEKQRDELEAQLKKVNISLTASRKRLQIAREEKDQFDEANNQILEHLKTKEEELSR 420

Query: 421 SIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYK 480
           SI +C+ E+DVL TWINFLED+W +QC+ ME KEKQ  +EL  HED+FVNLAI LLS YK
Sbjct: 421 SIDSCKAEADVLKTWINFLEDTWAIQCTYMESKEKQAKDELEVHEDFFVNLAIELLSGYK 480

Query: 481 KELGPSISRIGKFVENLKNLSEG 503
           KEL P I RI K+V+NLK LS G
Sbjct: 481 KELEPCIGRIEKYVKNLKALSGG 503

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	503
TAIR|locus:2173164	679	AT5G13560 [Arabidopsis thalian	0.984	0.729	0.626	5.9e-160
TAIR|locus:2049821	669	AT2G37370 "AT2G37370" [Arabido	0.968	0.727	0.511	2.6e-125
UNIPROTKB|E3W9A2	1427	CLIP1 "Uncharacterized protein	0.596	0.210	0.230	2.4e-05
TAIR|locus:2152985	1586	CIP1 "COP1-interactive protein	0.616	0.195	0.215	2.7e-05
MGI|MGI:1341857	717	Mad1l1 "MAD1 mitotic arrest de	0.536	0.376	0.256	3.6e-05
WB|WBGene00004955	1198	spd-5 [Caenorhabditis elegans	0.763	0.320	0.210	4.2e-05
UNIPROTKB|A7RNG8	644	v1g180167 "Coiled-coil domain-	0.371	0.290	0.253	0.00018
MGI|MGI:1098600	642	Odf2l "outer dense fiber of sp	0.564	0.442	0.183	0.00021
UNIPROTKB|J9P2D7	1364	EEA1 "Uncharacterized protein"	0.660	0.243	0.220	0.00028
UNIPROTKB|F1PZD3	1411	EEA1 "Uncharacterized protein"	0.660	0.235	0.220	0.00029

TAIR|locus:2173164 AT5G13560 [Arabidopsis thaliana (taxid:3702)]

 Score = 1558 (553.5 bits), Expect = 5.9e-160, P = 5.9e-160
 Identities = 314/501 (62%), Positives = 386/501 (77%)

Query:     3 SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
             SW R AVNKAVEVGN+ N+TRTVKNYAD+VV  AGQAVAEGAK+ QDRIGV ++KSV+QT
Sbjct:     2 SWLRTAVNKAVEVGNRKNITRTVKNYADSVVQHAGQAVAEGAKLFQDRIGVGAYKSVHQT 61

Query:    63 IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRK 122
             I+RLEEAA+S RG ER +L+ RWL+VLKE+++      +DK+   E+  A DEAK    K
Sbjct:    62 IQRLEEAAVSYRGQERALLITRWLSVLKEIDRATDSSLKDKQLSSEEQLASDEAK----K 117

Query:   123 PSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
                VLYYD D GGEPLNFRDVFLQSQALE I +SMI+E P++EEI+LLLEMFGLCL GGK
Sbjct:   118 REWVLYYDPDIGGEPLNFRDVFLQSQALEGIVLSMIIEPPHDEEITLLLEMFGLCLNGGK 177

Query:   183 EVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKK 242
             EVH AI SS+QDLAT  S Y+DEVLVK++ELLQFAQ AITGLK+N+++ RIDAEASDL+K
Sbjct:   178 EVHDAIVSSMQDLATVFSSYKDEVLVKQDELLQFAQNAITGLKINAEMLRIDAEASDLRK 237

Query:   243 RLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGXXXXXXXXSYGDSP 302
             +LE M A Q    ++ E    K T  TIEA KE LA+IR+C+RLEG        S GDSP
Sbjct:   238 KLEKMNASQIP--QESEDKEHKETPLTIEAFKETLAKIRLCSRLEGLLIRKRQLSNGDSP 295

Query:   303 EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEI 362
             ++HAQKVDKL+VL ESL+NS+ KAEKRIS++R QKEEALK RVVKANE+ EKEKE+GAEI
Sbjct:   296 DIHAQKVDKLRVLLESLANSTSKAEKRISENRLQKEEALKARVVKANETGEKEKELGAEI 355

Query:   363 SELVKQRDHLEAELKKVXXXXXXXXXXXXXXXXXXXXFDEANDQIVEHLKTKEDELLKSI 422
             ++L KQRD LEA+LK+V                    F EAN+QI+ HLKTK+D+L KS+
Sbjct:   356 AQLEKQRDELEADLKRVNLSLAAAQARFRNATEERDQFGEANNQIIAHLKTKDDDLSKSV 415

Query:   423 AACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKE 482
              AC+ E++V+ TWINFLED+W+LQCS +E K+KQ  +EL KHEDYF ++A+++LS YKKE
Sbjct:   416 VACKKEAEVIKTWINFLEDTWLLQCSHIETKDKQTLDELEKHEDYFSDVALNILSVYKKE 475

Query:   483 LGPSISRIGKFVENLKNLSEG 503
             + P ISRI  +VENLKNL  G
Sbjct:   476 VAPLISRIENYVENLKNLGPG 496

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2049821 AT2G37370 "AT2G37370" [Arabidopsis thaliana (taxid:3702)]

 Score = 1231 (438.4 bits), Expect = 2.6e-125, P = 2.6e-125
 Identities = 255/499 (51%), Positives = 345/499 (69%)

Query:     3 SWWRNAVNKAVEVGNKNNLTRTVKNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQT 62
             SW R+AVNKAVEVG KNN+TRTV+NYAD+VV  AG AV+EGAK++QDRIG R+ KS +  
Sbjct:     2 SWLRSAVNKAVEVGGKNNITRTVRNYADSVVLTAGNAVSEGAKLIQDRIGSRNVKSFSLA 61

Query:    63 IRRLEEAALSCRGPERVMLLRRWLTVLKEVEKL-YGLLSEDKEKLQEQLDAFDEAKDGPR 121
             ++RLEE ++S RG ERV LLRRWL  L+E+E++ Y     +  K     D   +++D P+
Sbjct:    62 VKRLEEVSVSSRGSERVQLLRRWLVALREIERMSYSCFDNNNHKT----DDHTQSEDSPK 117

Query:   122 KPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGG 181
               S V Y D    GEP+ FRDVFL S+ALE + +SMILEAPNEEE+ LLLE+FGLCL+G 
Sbjct:   118 NFSTVYYVDPGLPGEPMTFRDVFLHSEALEGMVLSMILEAPNEEEVQLLLELFGLCLSGE 177

Query:   182 KEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLK 241
             KEVH A+  ++QDLAT   KY+DEVL KREELLQ+ Q AI GLK+++DI RID EA  L 
Sbjct:   178 KEVHEAVIQNVQDLATVFLKYKDEVLAKREELLQYVQGAIGGLKLSADIARIDIEAHTLM 237

Query:   242 KRLEG--MKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGXXXXXXXXSYG 299
             ++L+   +K L+++S+ED   AS+  T A+ EAL+E L Q+R  ++LE           G
Sbjct:   238 EKLDKTKVKVLEHASSED---ASK--TAASTEALREILEQVRTFSKLEALLLRKKSLHNG 292

Query:   300 DSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIG 359
             D+ + H +KVDKLKVLSESL NS+ KAEKRI DHRSQKEEAL  RV K  E  + EK++ 
Sbjct:   293 DTLQRHIEKVDKLKVLSESLLNSTSKAEKRIMDHRSQKEEALSYRVSKTTEVGQLEKDVA 352

Query:   360 AEISELVKQRDHLEAELKKVXXXXXXXXXXXXXXXXXXXXFDEANDQIVEHLKTKEDELL 419
             AE+ +L   ++ LEAELK+V                    FD A+++I+ HLK+KE+EL 
Sbjct:   353 AELKKLEILKEDLEAELKRVNTSITSARARLRNAQEEREQFDNASNEILMHLKSKEEELT 412

Query:   420 KSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAY 479
             +SI +CRVE+DV++ WI FLED+W+LQ    + K+ QVS E+ ++ D+F++L + LLS Y
Sbjct:   413 RSITSCRVEADVVNKWIKFLEDTWILQSKFSQQKDNQVSGEMERYSDHFIDLIVQLLSFY 472

Query:   480 KKELGPSISRIGKFVENLK 498
             K++L P I +I   V +L+
Sbjct:   473 KEQLDPYIPKIRGVVASLE 491

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E3W9A2 CLIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 75/326 (23%), Positives = 134/326 (41%)

Query:   187 AITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAE---ASDLKKR 243
             A    + DL  A+ K   E  ++ E L Q  + A   +K N +IE+ DAE   AS + K 
Sbjct:   757 AAEEKLSDL-DALQKASSEGKLEIENLRQQLEAAEKQIK-NLEIEK-DAESSKASSITKE 813

Query:   244 LEGMKALQNSSNEDLEQASE--KTTKATIEALKEALAQI-RVCTRLEGXXXXXXXXSYGD 300
             L+G + + N+  E+L + S+  +  +  ++ LKE  A         +          +  
Sbjct:   814 LQGKELMLNNLQENLSEVSQVKEALEKELQTLKEKFADASEEAVSFQRSMQETVNKLHQK 873

Query:   301 SPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGA 360
               + +A    +L+ L E+L++   K  +R  D R  +E+ +K +    N+ +   K  G 
Sbjct:   874 EEQFNALS-SELEKLRENLTDMEAKFRER--DER--EEQLIKAKEKLENDIAAIMKMSGD 928

Query:   361 EISELVKQRDHLEAELKKVXXXXXXXXXXXXXXXXXXXXFDEAN---DQIVEHLKTKEDE 417
               S+L K  D L  + + V                      E     +Q  +    K +E
Sbjct:   929 NSSQLTKMNDELRLKERNVEELQLKLTKANENASLLQKSIGEVTLKAEQSQKEAAKKHEE 988

Query:   418 LLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELK-EKQVSEELVKHEDYFVNLAISLL 476
               K +   R  SD+       +E SW  +C  ++ + E+  SE   KHE+   NL   LL
Sbjct:   989 EKKELL--RKLSDLEKK----MEMSWN-ECQDLKARYEEASSESRAKHEEVLQNLH-KLL 1040

Query:   477 SAYKKELGPSISRIGKFVENLKNLSE 502
                ++ L  +     + ++ L+ L +
Sbjct:  1041 RDTEERLKAAQEENRELLQKLEELGK 1066

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0044354 "macropinosome" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

TAIR|locus:2152985 CIP1 "COP1-interactive protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 71/330 (21%), Positives = 149/330 (45%)

Query:    57 KSVNQTIRRLEEAALSCRGPERVMLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEA 116
             KS +Q +  ++++ L     E+ ML +R L +  E+++    + E   +  EQL      
Sbjct:   688 KSADQQVADMKQS-LDNAEEEKKMLSQRILDISNEIQEAQKTIQEHMSE-SEQLKESHGV 745

Query:   117 KDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALE--AITVSMILEAPNEEEISLLLEMF 174
             K+      L   ++           ++  Q + LE   + +S  L A  EE+ SL   M 
Sbjct:   746 KER-ELTGLRDIHETHQRESSTRLSELETQLKLLEQRVVDLSASLNAAEEEKKSLS-SMI 803

Query:   175 GLCLTGGKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLK-MNSDIERI 233
              L +T   E+  A  S +Q+L T +++ +D +  K  EL  F +      +  +S ++ +
Sbjct:   804 -LEITD--ELKQA-QSKVQELVTELAESKDTLTQKENELSSFVEVHEAHKRDSSSQVKEL 859

Query:   234 DAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCT----RLEGX 289
             +A     +++++ +    NSS E+ +  S++ ++ +I+ +K A + I+  +    RL+G 
Sbjct:   860 EARVESAEEQVKELNQNLNSSEEEKKILSQQISEMSIK-IKRAESTIQELSSESERLKGS 918

Query:   290 XXXXXXXSYG--DSPEVHAQKVD-KLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVV 346
                     +   D  E H +++  +L+ L   L +S  +  + +S+     EE  +    
Sbjct:   919 HAEKDNELFSLRDIHETHQRELSTQLRGLEAQLESSEHRVLE-LSESLKAAEEESRTMST 977

Query:   347 KANESSEKEKEIGAEISELVKQRDHLEAEL 376
             K +E+S++ +     + EL      L+ +L
Sbjct:   978 KISETSDELERTQIMVQELTADSSKLKEQL 1007

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005856 "cytoskeleton" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=TAS

MGI|MGI:1341857 Mad1l1 "MAD1 mitotic arrest deficient 1-like 1" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 76/296 (25%), Positives = 143/296 (48%)

Query:    87 TVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQ 146
             T L+E+++  GLL+E+ E LQ +L   ++ ++     +LV   D +   E L  +   LQ
Sbjct:   267 THLREMKETNGLLTEELEGLQRKLSRQEKMQE-----ALV---DLELEKEKLLAK---LQ 315

Query:   147 S-QALEAITVSMILEAPNEEEIS-LLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQD 204
             S + L+  T+ + L  P  E++S  ++E+    LT  KE +++ITSS + L     + QD
Sbjct:   316 SWENLDQ-TMGLNLRTP--EDLSRFVVELQQRELTL-KEKNNSITSSARGLEKVQQQLQD 371

Query:   205 EVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEK 264
             EV     +LL+  +   T   +   +++ +A    L K  +GM+A+  S + +L Q +E 
Sbjct:   372 EVRQANAQLLEERKKRETHEALARRLQKRNAL---LTKERDGMRAILGSYDSELTQ-TEY 427

Query:   265 TTKATIEALKEALAQIRVCTRLEGXXXXXXXXSYGDSPEVHAQKVDKLKVLSESLSNSSV 324
             +T+ T + L EA   ++                  +   V  Q+ D L++  + L   + 
Sbjct:   428 STQLT-QRLWEAEDMVQK-VHAHSSEMEAQLSQALEELGVQKQRADTLEMELKMLKAQTS 485

Query:   325 KAEKRISDHRSQKEEA-LKVRVVKANESS-EKEKEI-GAEISELVKQRDHLEAELK 377
              AE   S  + + +   LKV  ++   S  E+EK++   ++ +L  Q D+ ++  K
Sbjct:   486 SAESSFSFCKEEVDALRLKVEELEGERSRLEQEKQVLEMQMEKLTLQGDYNQSRTK 541

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0072686 "mitotic spindle" evidence=ISO

GO:0090235 "regulation of metaphase plate congression" evidence=ISO

WB|WBGene00004955 spd-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 134 (52.2 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 88/419 (21%), Positives = 169/419 (40%)

Query:    80 MLLRRWLTVLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYY--DADFGGEP 137
             M L     V   VE++   +S+ +E L      F+  K        +L     +D   + 
Sbjct:   560 MFLEGQHDVAVNVEQMQEKMSQIREALAR---LFERLKSSAALFEEILERMGSSDPNADK 616

Query:   138 LNFRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLAT 197
             +    +  ++   + + VS ILEA  ++  ++ L  F +       +  +I S   + + 
Sbjct:   617 IKKMKLAFETSINDKLNVSAILEAAEKDLHNMSLN-FSI-------LEKSIVSQAAEASR 668

Query:   198 AISKYQDEVLVKREELLQFAQTAITGLKMNSDI-ERIDAEASDLKKRLE-----GMKALQ 251
               +   D   V    LL  + + +     NSDI E++  E S+LK  LE      M++  
Sbjct:   669 RFTIAPDAEDVASSSLLNASYSPLFKFTSNSDIVEKLQNEVSELKNELEMARTRDMRSPL 728

Query:   252 NSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGXXXXXXXXSYGDSPEVHAQKVDK 311
             N S+  L      T +   E L+ + A ++                  +  +V++ K+ +
Sbjct:   729 NGSSGRLSDVQINTNRM-FEDLEVSEATLQKAKEENSTLKSQFAELEANLHQVNS-KLGE 786

Query:   312 LKV-LSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEK--EIGAEISELVKQ 368
             ++  L+E+L+    + E R+    + +E    +  +K  E+  K+   ++G  ++E  K 
Sbjct:   787 VRCELNEALARVDGEQETRVKAENALEEARQLISSLKHEENELKKTITDMGMRLNEAKKS 846

Query:   369 RDHLEAELKKVXXXXXXXXXXXXXXXXXXXXF----DEANDQIVEHLKTKEDELLKSIAA 424
              + L++EL                       +     EA ++ VEH  +++ E+L+ I  
Sbjct:   847 DEFLKSELSTALEEEKKSQNLADELSEELNGWRMRTKEAENK-VEHASSEKSEMLERIVH 905

Query:   425 CRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKEL 483
                E + LST      D     CS  ++ E++   EL K+ + F N AI  L    KE+
Sbjct:   906 LETEMEKLST-SEIAAD----YCST-KMTERKKEIELAKYREDFENAAIVGLERISKEI 958

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0033365 "protein localization to organelle" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|A7RNG8 v1g180167 "Coiled-coil domain-containing protein 22 homolog" [Nematostella vectensis (taxid:45351)]

 Score = 120 (47.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 51/201 (25%), Positives = 89/201 (44%)

Query:   188 ITSSIQDLATAISKYQDEVLVKREELLQFAQ-----TAITGLKMNSDIERIDAEASDLKK 242
             I SS  D  + I          R E LQFAQ      A+ GL   S   ++D E    KK
Sbjct:   285 IVSSFSDRVSTIESQTQGSRFTRTEKLQFAQDEQKAAAMAGLS-ESGPPKMDTEEELQKK 343

Query:   243 RLEGMKALQN-----SSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGXXXXXXXXS 297
             R + ++ALQN     +S+ D +++  KT  A ++   E +   +V              +
Sbjct:   344 REQELEALQNKLKDLASSVDEKKSEIKTMNAGLQQTNEQVTATKVQNSEHEESYKVKKRT 403

Query:   298 YGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQK-EEALKVRVVKANESSEKEK 356
                 P+     + KL+ + +S S   V   ++   HR+   +E  +++V+ AN+ SE +K
Sbjct:   404 VDLLPDAE-NNIAKLQGVVDSSSQRLVNLAQQWETHRTALIDEYRELKVINANKVSETQK 462

Query:   357 EIGAEISELVKQRDHLEAELK 377
             ++  EI  L ++   +  E +
Sbjct:   463 KL-EEIKSLREKMKEVAEETR 482

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1098600 Odf2l "outer dense fiber of sperm tails 2-like" [Mus musculus (taxid:10090)]

 Score = 126 (49.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 56/306 (18%), Positives = 130/306 (42%)

Query:   150 LEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQD--EVL 207
             +E + +   L+A  +E  S+  E+  L     +EV     + ++   T + K Q+  E++
Sbjct:   344 IENVKLKGTLDALKDEVASVENELVEL-----QEVEKRQKTLVEGYRTQVQKLQEAAEMV 398

Query:   208 VKR-EELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTT 266
               R + LL      IT    N  +E++  +     K++E  ++   S+ + L++  EK  
Sbjct:   399 KSRCKNLLHENNLIITN--KNKKLEKMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQ 456

Query:   267 KATIEALKEALAQIRVCTRLEGXXXXXXXXSYGDSPEVHAQKVDKLKVLSESLSNSSVKA 326
             +   +  ++AL    +  +++G        S  +   +   K + LK   E +   + + 
Sbjct:   457 RCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENHLIQLKCENLKEKLEQMDAENKEL 516

Query:   327 EKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQ-RDHLEAELKKVXXXXXX 385
             EK+++D    +EE LK   ++  E + +   +  ++   +++ R  +  E++K+      
Sbjct:   517 EKKLAD----QEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERA 572

Query:   386 XXXXXXXXXXXXXXFDEANDQIVEHLKTKED-------ELLKSIAACRVESDVLSTWINF 438
                            +E  +Q+V+ + TK         E+  S+      ++ +  ++ F
Sbjct:   573 LQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQF 632

Query:   439 LEDSWV 444
             L+ S+V
Sbjct:   633 LQISYV 638

GO:0003674 "molecular_function" evidence=ND

GO:0005813 "centrosome" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|J9P2D7 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 80/362 (22%), Positives = 154/362 (42%)

Query:    26 KNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRW 85
             K+Y   VVH AG   + G + L       + K  + T+ R E   L     E      +W
Sbjct:    12 KHY--EVVHDAGNDSSHGGEAL-------ALKRDDITLLRQEIQDLQASLKEE-----KW 57

Query:    86 LT--VLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDV 143
              +  + KE+EK  GL  + +E   + L A   A+    +  L      +F  + +  +D+
Sbjct:    58 YSEELKKELEKFQGL--QQQESKPDGLVADSSAELQSLEQQLEEAQTENFNIKQM--KDL 113

Query:   144 FLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQ 203
             F Q  A  A  ++ + ++  +EE SL  E     +T   E  +  T+ IQDL T + +  
Sbjct:   114 FEQKAAQLATEIADV-KSKYDEERSLR-EAAEQKVTHLTEELNKETTIIQDLKTELLQRP 171

Query:   204 --DEVLVKREELLQFAQTAITG--LKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLE 259
               ++V V ++EL+Q  QT +    L+   + E++  E   L+      +A  +    +L 
Sbjct:   172 GIEDVAVLKKELVQ-VQTLMDNMTLEREKESEKLKDECKKLQAEFVNSEATISQLRSELA 230

Query:   260 QASEKTTKAT--IEALKEALAQIRVCTRLEGXXXXXXXXSYGDSPEVHAQKVDKLKVLSE 317
             +  ++       ++ LK +L ++    +            +    E H ++    K +  
Sbjct:   231 KGPQEVAVYVQELQKLKSSLNELTQKNQNLSEKLLKKELEFTQLEEKHNEECVSRKNIQA 290

Query:   318 SLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELK 377
             SL    +  ++ +    S  E +L+    +  E  E  +++  E+SE+  +  HL+AE K
Sbjct:   291 SLHQKDLDCQQ-LQSRLSASETSLQRIQAELGEKGEATQKLKEELSEVETKYQHLKAEFK 349

Query:   378 KV 379
             ++
Sbjct:   350 QL 351

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PZD3 EEA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 0.00029, P = 0.00029
 Identities = 80/362 (22%), Positives = 154/362 (42%)

Query:    26 KNYADNVVHQAGQAVAEGAKILQDRIGVRSFKSVNQTIRRLEEAALSCRGPERVMLLRRW 85
             K+Y   VVH AG   + G + L       + K  + T+ R E   L     E      +W
Sbjct:    59 KHY--EVVHDAGNDSSHGGEAL-------ALKRDDITLLRQEIQDLQASLKEE-----KW 104

Query:    86 LT--VLKEVEKLYGLLSEDKEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDV 143
              +  + KE+EK  GL  + +E   + L A   A+    +  L      +F  + +  +D+
Sbjct:   105 YSEELKKELEKFQGL--QQQESKPDGLVADSSAELQSLEQQLEEAQTENFNIKQM--KDL 160

Query:   144 FLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGKEVHHAITSSIQDLATAISKYQ 203
             F Q  A  A  ++ + ++  +EE SL  E     +T   E  +  T+ IQDL T + +  
Sbjct:   161 FEQKAAQLATEIADV-KSKYDEERSLR-EAAEQKVTHLTEELNKETTIIQDLKTELLQRP 218

Query:   204 --DEVLVKREELLQFAQTAITG--LKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLE 259
               ++V V ++EL+Q  QT +    L+   + E++  E   L+      +A  +    +L 
Sbjct:   219 GIEDVAVLKKELVQ-VQTLMDNMTLEREKESEKLKDECKKLQAEFVNSEATISQLRSELA 277

Query:   260 QASEKTTKAT--IEALKEALAQIRVCTRLEGXXXXXXXXSYGDSPEVHAQKVDKLKVLSE 317
             +  ++       ++ LK +L ++    +            +    E H ++    K +  
Sbjct:   278 KGPQEVAVYVQELQKLKSSLNELTQKNQNLSEKLLKKELEFTQLEEKHNEECVSRKNIQA 337

Query:   318 SLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELK 377
             SL    +  ++ +    S  E +L+    +  E  E  +++  E+SE+  +  HL+AE K
Sbjct:   338 SLHQKDLDCQQ-LQSRLSASETSLQRIQAELGEKGEATQKLKEELSEVETKYQHLKAEFK 396

Query:   378 KV 379
             ++
Sbjct:   397 QL 398

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0019897 "extrinsic to plasma membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005969 "serine-pyruvate aminotransferase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005545 "1-phosphatidylinositol binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029515001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (680 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	503
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
pfam13166	713	pfam13166, AAA_13, AAA domain	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 46/239 (19%), Positives = 107/239 (44%), Gaps = 9/239 (3%)

Query: 182 KEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLK 241
           K    ++   +++L   + + + ++   + EL   A       ++ S +E ++ E  +L+
Sbjct: 694 KNELRSLEDLLEELRRQLEELERQLEELKREL---AALEEELEQLQSRLEELEEELEELE 750

Query: 242 KRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDS 301
           + LE ++       E+LE   E    A ++   E L + R   + E   L+++L      
Sbjct: 751 EELEELQERLEELEEELESLEEA--LAKLKEEIEELEEKRQALQEELEELEEELEEAERR 808

Query: 302 PEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAE 361
            +   ++++ L+   E L     + E+ I +   + +E  +    +  E  ++ +E+  E
Sbjct: 809 LDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEE----ELEELEKELEELKEE 864

Query: 362 ISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLK 420
           + EL  +++ LE ELK++       +  LR  + E  +  E  +++ E L+  E +L +
Sbjct: 865 LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 38/198 (19%), Positives = 84/198 (42%), Gaps = 9/198 (4%)

Query: 227 NSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRL 286
            S++E +  E  +L++ L  +K        ++    E+  +   E  +       +  ++
Sbjct: 273 KSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKI 332

Query: 287 EGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVV 346
           E L  K++L       E   Q + +L+   E L       E+++S    + EE  +    
Sbjct: 333 EAL--KEELEERETLLEELEQLLAELEEAKEEL-------EEKLSALLEELEELFEALRE 383

Query: 347 KANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQ 406
           +  E   +  EI  E+ EL ++ + LE  L++++  L   +  L+  + E E+     ++
Sbjct: 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEE 443

Query: 407 IVEHLKTKEDELLKSIAA 424
           + E L+  E++L +    
Sbjct: 444 LNEELEELEEQLEELRDR 461

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 38/212 (17%), Positives = 88/212 (41%), Gaps = 16/212 (7%)

Query: 210 REELLQFAQTAITG--LKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTK 267
            +E  ++    +      +    E I+ + + L++ LE +    +   + LE+  +    
Sbjct: 217 LKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQL--- 273

Query: 268 ATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAE 327
                L+E   +I+     E L +K+K+           + + + +   E       K E
Sbjct: 274 -----LEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328

Query: 328 KRISDHRSQKEEALKVRVVKANESSEKEKE-IGAEISELVKQRDHLEAELKKVNLSLAAA 386
             I    ++ EE     + +  E   K ++ +  E +EL ++ + L AEL++V+   A  
Sbjct: 329 AEIDKLLAEIEE-----LEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383

Query: 387 QARLRNAQEEREQFDEANDQIVEHLKTKEDEL 418
           +  L++ +E+ E+     +++   L   ++EL
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEEL 415

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 54/247 (21%), Positives = 103/247 (41%), Gaps = 37/247 (14%)

Query: 186 HAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMN------------SDIERI 233
             +  ++ +L   + + ++E+   R+EL +     I+ L+ +              I ++
Sbjct: 694 AELEKALAELRKELEELEEELEQLRKELEE-LSRQISALRKDLARLEAEVEQLEERIAQL 752

Query: 234 DAEASDLKKRLEGMKALQNSSNEDLEQASEK--TTKATIEALKEALAQIRVCTRLEGLLL 291
             E ++L+  +E ++     + E+L +A  +    +A IE LKE L  +R    L+ L  
Sbjct: 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR--EALDELRA 810

Query: 292 KKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANES 351
           +  LL+         ++   L+   ESL       E+R+ D   Q EE            
Sbjct: 811 ELTLLN---------EEAANLRERLESLERRIAATERRLEDLEEQIEEL----------- 850

Query: 352 SEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHL 411
           SE  + + AEI EL +  + LE+EL+ +    A+ +  L   + E E+  E   ++    
Sbjct: 851 SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910

Query: 412 KTKEDEL 418
                EL
Sbjct: 911 SELRREL 917

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 46/266 (17%), Positives = 103/266 (38%), Gaps = 43/266 (16%)

Query: 201 KYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQ 260
           +YQ+  L      L+ A       ++  ++E ++ E S L++ LE ++     + +++E+
Sbjct: 214 RYQE--LKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEE 271

Query: 261 ASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLS 320
              +     +E L+E L ++                          +++ +LK   E L 
Sbjct: 272 LKSE-----LEELREELEEL-------------------------QEELLELKEEIEELE 301

Query: 321 NSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVN 380
                  +R+ +  ++ EE  +          EK + +  E+ E     + LE  L ++ 
Sbjct: 302 GEISLLRERLEELENELEELEERLEEL----KEKIEALKEELEERETLLEELEQLLAELE 357

Query: 381 LSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLE 440
                        +E+     E  +++ E L+ +  EL   +A  R E + L   I  LE
Sbjct: 358 -------EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 441 DSWVLQCSQMELKEKQVSEELVKHED 466
           +       ++E  ++++ E   + E+
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEE 436

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 37/181 (20%), Positives = 83/181 (45%), Gaps = 13/181 (7%)

Query: 228 SDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTK--ATIEALKEALAQIRVCTR 285
            +IE+++ E   LK+RLE ++   +S  +++E    +  +  A IE L+E L ++     
Sbjct: 723 KEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLE---- 778

Query: 286 LEGLLLKKKLLSYGDSP----EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEAL 341
                L         S     +    K+++     E+      +   R++  +   E+ +
Sbjct: 779 ---EALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835

Query: 342 KVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFD 401
           +    +  +  E+ K I  EI  L  +++ LE EL+++  +L   ++RL + ++ER++ +
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELE 895

Query: 402 E 402
            
Sbjct: 896 A 896

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 36/196 (18%), Positives = 81/196 (41%), Gaps = 23/196 (11%)

Query: 229 DIERIDAEASDLKKRLEGMKA-LQNSSNEDLEQASEKTTKATIEALKEALAQI--RVCTR 285
            IE+++      +  +E     L++  + + E +  K     ++AL EAL +I  +   +
Sbjct: 283 LIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEKNLQK 342

Query: 286 LEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRV 345
           LE    K K  S     E     ++ +  + +++ N  ++      D+  +++   K ++
Sbjct: 343 LEE---KLKDPSTSIELESITDLIESINDIIDAI-NELIREHNEKIDNLKKEKNKAKKKL 398

Query: 346 VKA---------NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEE 396
                       +   +++K +   I+ L K+   LEAE+K +   +   + +L N +  
Sbjct: 399 WLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEP- 457

Query: 397 REQFDEANDQIVEHLK 412
                   D+I + LK
Sbjct: 458 ------TADEINKLLK 467

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	503
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.67
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.07
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.73
PRK09039	343	hypothetical protein; Validated	91.9
PRK11637	428	AmiB activator; Provisional	91.87
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	91.39
PRK02224	880	chromosome segregation protein; Provisional	91.18
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	89.94
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	89.47
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	89.27
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	87.93
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	87.15
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	86.96
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	86.96
PHA02562	562	46 endonuclease subunit; Provisional	85.96
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.08
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	84.52
KOG1655	218	consensus Protein involved in vacuolar protein sor	81.39
PF10211	189	Ax_dynein_light: Axonemal dynein light chain; Inte	80.7
PHA02562	562	46 endonuclease subunit; Provisional	80.2
PRK10884	206	SH3 domain-containing protein; Provisional	80.17

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.67  E-value=4.6  Score=47.83  Aligned_cols=40  Identities=15%  Similarity=0.352  Sum_probs=38.1

Q ss_pred             HHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHH
Q 010719          406 QIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVL  445 (503)
Q Consensus       406 qIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~l  445 (503)
                      ..|..|+.+...|.+.|..|+....-|.-|=.|+...|.-
T Consensus       771 ~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~  810 (1201)
T PF12128_consen  771 ERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK  810 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            3999999999999999999999999999999999999975

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.07  E-value=11  Score=45.35  Aligned_cols=81  Identities=27%  Similarity=0.431  Sum_probs=46.4

Q ss_pred             HHHHHHhhhcCcHHH-----HHHH-H-----HhHHHHHHHhccchhhhccChHHHHHH------HHHhhhcc-----Ccc
Q 010719          170 LLEMFGLCLTGGKEV-----HHAI-T-----SSIQDLATAISKYQDEVLVKREELLQF------AQTAITGL-----KMN  227 (503)
Q Consensus       170 LlEiFglcL~GGkeV-----h~ai-v-----ssiqdLA~afs~y~DEvLvkReELlq~------aq~AisGL-----K~n  227 (503)
                      |+|.-|.--+||+.|     .+.+ |     .+++.+..+++.-.|..=+.++++.+.      ....|--|     +.-
T Consensus       747 lIe~SGtmtGGG~~v~~g~mg~~~~~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~  826 (1293)
T KOG0996|consen  747 LIEKSGTMTGGGKKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLT  826 (1293)
T ss_pred             eecccccccCCCCcCCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHH
Confidence            345555555566665     3334 2     377888888888777544444444221      12222222     456


Q ss_pred             hhhhhhhhHHHHHHHHHhHHhhh
Q 010719          228 SDIERIDAEASDLKKRLEGMKAL  250 (503)
Q Consensus       228 AdiariD~Ea~~L~~kl~~~~~~  250 (503)
                      +++-|++.+...|.+.|-+..+.
T Consensus       827 ~~~k~~~~~~~~l~~~i~~~E~~  849 (1293)
T KOG0996|consen  827 ASVKRLAELIEYLESQIAELEAA  849 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777766643

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.73  E-value=9.2  Score=39.21  Aligned_cols=154  Identities=19%  Similarity=0.337  Sum_probs=91.3

Q ss_pred             cchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHH------HHHHh-----hh---hhhhh
Q 010719          226 MNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQ------IRVCT-----RL---EGLLL  291 (503)
Q Consensus       226 ~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~q------iRlcS-----~l---E~lll  291 (503)
                      +-.+|.+||+.+.++++|++..+.--.++...-.+-.     .=|+.+++-+.+      =|+.+     .-   =+.+|
T Consensus        50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~-----~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil  124 (265)
T COG3883          50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ-----KEIAELKENIVERQELLKKRARAMQVNGTATSYIDVIL  124 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            5678899999999999888887732211111111111     013333322221      11111     00   01223


Q ss_pred             hhhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHH
Q 010719          292 KKKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDH  371 (503)
Q Consensus       292 kkk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~Lekqrde  371 (503)
                      ..|+++         ..++++-++     +.+.++++-|+++--..+..|+-   |..-+...-..|.+=+.+||.+.+.
T Consensus       125 ~SkSfs---------D~IsRvtAi-----~~iv~aDk~ile~qk~dk~~Le~---kq~~l~~~~e~l~al~~e~e~~~~~  187 (265)
T COG3883         125 NSKSFS---------DLISRVTAI-----SVIVDADKKILEQQKEDKKSLEE---KQAALEDKLETLVALQNELETQLNS  187 (265)
T ss_pred             ccCcHH---------HHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333         566776663     45789999999986666555542   3333444445566667778888888


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 010719          372 LEAELKKVNLSLAAAQARLRNAQEEREQFD  401 (503)
Q Consensus       372 LEAeLkkVn~sL~aA~aRl~~~rEERdqFd  401 (503)
                      |+.+....|..+.++.++...+.+|...-.
T Consensus       188 L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~  217 (265)
T COG3883         188 LNSQKAEKNALIAALAAKEASALGEKAALE  217 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            888888888888888888888888876554

>PRK09039 hypothetical protein; Validated

Probab=91.90  E-value=7.4  Score=40.34  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHH
Q 010719          359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKS  421 (503)
Q Consensus       359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsks  421 (503)
                      -.+|..|..|.+.|++||..++..|.++..+.   ++-+.++++--..|-.+|..|..||.+-
T Consensus       136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~---~~~~~~i~~L~~~L~~a~~~~~~~l~~~  195 (343)
T PRK09039        136 LAQVELLNQQIAALRRQLAALEAALDASEKRD---RESQAKIADLGRRLNVALAQRVQELNRY  195 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34577888888888888888888888888887   5556666666666777776677777654

>PRK11637 AmiB activator; Provisional

Probab=91.87  E-value=6.1  Score=41.30  Aligned_cols=17  Identities=18%  Similarity=0.227  Sum_probs=7.6

Q ss_pred             HHhhhchhHHHHHHhhh
Q 010719          409 EHLKTKEDELLKSIAAC  425 (503)
Q Consensus       409 ~hLk~KedELsksi~sc  425 (503)
                      ..|....+.|.+.+++.
T Consensus       117 ~~l~~~~~~l~~rlra~  133 (428)
T PRK11637        117 QQQAAQERLLAAQLDAA  133 (428)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444454444443

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=91.39  E-value=30  Score=39.29  Aligned_cols=6  Identities=50%  Similarity=1.060  Sum_probs=3.3

Q ss_pred             hhcCcH
Q 010719          177 CLTGGK  182 (503)
Q Consensus       177 cL~GGk  182 (503)
                      +++||.
T Consensus       654 ~~tgG~  659 (1164)
T TIGR02169       654 AMTGGS  659 (1164)
T ss_pred             CccCCC
Confidence            446664

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=91.18  E-value=30  Score=38.97  Aligned_cols=13  Identities=23%  Similarity=0.483  Sum_probs=6.3

Q ss_pred             CChhhHHHHhhHH
Q 010719          300 DSPEVHAQKVDKL  312 (503)
Q Consensus       300 dspe~ha~kvdkL  312 (503)
                      +.+.-|..+++++
T Consensus       468 ~~~~~~~~~~~~~  480 (880)
T PRK02224        468 ETIEEDRERVEEL  480 (880)
T ss_pred             hhHHHHHHHHHHH
Confidence            3444455555554

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=89.94  E-value=49  Score=39.35  Aligned_cols=65  Identities=28%  Similarity=0.405  Sum_probs=36.5

Q ss_pred             cHHHHHHHHHhHHHHHHHhccchhhhccChHHHHHHHHHhhhccCcchhhhhhhhHHHHHHHHHhHHh
Q 010719          181 GKEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMK  248 (503)
Q Consensus       181 GkeVh~aivssiqdLA~afs~y~DEvLvkReELlq~aq~AisGLK~nAdiariD~Ea~~L~~kl~~~~  248 (503)
                      ..+-+..+...++...+....+..++--.++++..+ |.....++.  .+..++.++..++.+++...
T Consensus       251 ~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~-~~~~~~~~~--~~~~le~~~~~~~~~~~~~~  315 (1163)
T COG1196         251 LEEELEELQEELEEAEKEIEELKSELEELREELEEL-QEELLELKE--EIEELEGEISLLRERLEELE  315 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555544445555555 555554443  66666666666666666554

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=89.47  E-value=43  Score=38.06  Aligned_cols=20  Identities=20%  Similarity=0.552  Sum_probs=9.3

Q ss_pred             hhhhhhhHHHHHHHHHhHHh
Q 010719          229 DIERIDAEASDLKKRLEGMK  248 (503)
Q Consensus       229 diariD~Ea~~L~~kl~~~~  248 (503)
                      ++..+-.+...|+.+++++.
T Consensus       675 ~l~~l~~~l~~l~~~l~~l~  694 (1164)
T TIGR02169       675 ELQRLRERLEGLKRELSSLQ  694 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555554444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=89.27  E-value=55  Score=38.97  Aligned_cols=85  Identities=22%  Similarity=0.358  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHH---HHhhhchhHHHHHHhhhhhhhhHHH
Q 010719          357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIV---EHLKTKEDELLKSIAACRVESDVLS  433 (503)
Q Consensus       357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv---~hLk~KedELsksi~sc~vEA~vv~  433 (503)
                      .+..||..++.+.++++.++.-+...+.....++.+..++.......-..+-   ..++.+..+|.+.+.....+..-.+
T Consensus       825 ~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~  904 (1163)
T COG1196         825 RLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK  904 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666666666666666666666666555554444433333332   2334444555555555555555444


Q ss_pred             HHHHhhHh
Q 010719          434 TWINFLED  441 (503)
Q Consensus       434 tWinFLed  441 (503)
                      .=|..+..
T Consensus       905 ~~~~~~~~  912 (1163)
T COG1196         905 EEIEKLRE  912 (1163)
T ss_pred             HHHHHHHH
Confidence            44444433

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=87.93  E-value=12  Score=39.00  Aligned_cols=106  Identities=22%  Similarity=0.339  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHH
Q 010719          353 EKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVL  432 (503)
Q Consensus       353 ~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv  432 (503)
                      +.|+++-+++..|++|--.|+++-.++-    --.-|+|      +.||--..|.-.....-+|+|+..++-|.-    +
T Consensus        45 E~EaelesqL~q~etrnrdl~t~nqrl~----~E~e~~K------ek~e~q~~q~y~q~s~Leddlsqt~aikeq----l  110 (333)
T KOG1853|consen   45 EIEAELESQLDQLETRNRDLETRNQRLT----TEQERNK------EKQEDQRVQFYQQESQLEDDLSQTHAIKEQ----L  110 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence            4566666666666666555555433322    2223333      233333333333333447888888777742    2


Q ss_pred             HHHHHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHHhhchhhHHHH
Q 010719          433 STWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKKELGPSISRIG  491 (503)
Q Consensus       433 ~tWinFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke~l~~~i~~i~  491 (503)
                      ..+|.               +=.|.||.|||..-.    +++.|+.|-..|...|+|+-
T Consensus       111 ~kyiR---------------eLEQaNDdLErakRa----ti~sleDfeqrLnqAIErnA  150 (333)
T KOG1853|consen  111 RKYIR---------------ELEQANDDLERAKRA----TIYSLEDFEQRLNQAIERNA  150 (333)
T ss_pred             HHHHH---------------HHHHhccHHHHhhhh----hhhhHHHHHHHHHHHHHHHH
Confidence            33333               235899999998753    67888999999999998874

>TIGR00606 rad50 rad50

Probab=87.15  E-value=77  Score=38.22  Aligned_cols=91  Identities=12%  Similarity=0.039  Sum_probs=69.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhh
Q 010719          360 AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFL  439 (503)
Q Consensus       360 ~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFL  439 (503)
                      .++..|.+..+.+..+..+.+..++..+.+..+.+.++.+..++-. ....|+...++|...+..|..+-.-+..=|.=|
T Consensus       836 ~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~-~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~  914 (1311)
T TIGR00606       836 HELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL  914 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            3444444445555888888999999999999999999999999555 888899999999999998888777776666666


Q ss_pred             HhhH-HHhhhHHH
Q 010719          440 EDSW-VLQCSQME  451 (503)
Q Consensus       440 edtW-~lq~~~~e  451 (503)
                      ...| .+|+.|.+
T Consensus       915 ~~~~~~~~~~~~~  927 (1311)
T TIGR00606       915 ETFLEKDQQEKEE  927 (1311)
T ss_pred             hHHHHHHHHHHHH
Confidence            5555 35555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=86.96  E-value=80  Score=38.18  Aligned_cols=121  Identities=15%  Similarity=0.193  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHH-HHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHH
Q 010719          357 EIGAEISELVKQRDHLEAEL-KKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTW  435 (503)
Q Consensus       357 el~~EI~~LekqrdeLEAeL-kkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tW  435 (503)
                      ++..++..|+||...+++++ +.++..+....-.+.....|...|++    ++..|..+.+++-.-+..-.-|..-+..=
T Consensus       369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~----~~~~L~~e~~~~~~~~~~~~ee~~~i~~~  444 (1074)
T KOG0250|consen  369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE----QINSLREELNEVKEKAKEEEEEKEHIEGE  444 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45677888888888899998 88999999999999999999999998    77889999999999999999999999888


Q ss_pred             HHhhHhhHHHhhhHHHHHHhhhhHHHhhhHhHHHHHHHHHHHHHHH
Q 010719          436 INFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLLSAYKK  481 (503)
Q Consensus       436 inFLedtW~lq~~~~e~kekq~~deler~~~~f~~l~~~~ls~~ke  481 (503)
                      |.-|.-+=.-++...+-=.+--+|-+-.+++++..|..-+=..|-.
T Consensus       445 i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~  490 (1074)
T KOG0250|consen  445 ILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRR  490 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhc
Confidence            8888765554444433333444566778888888776554444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.96  E-value=74  Score=37.77  Aligned_cols=123  Identities=24%  Similarity=0.319  Sum_probs=80.2

Q ss_pred             hHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHH---HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Q 010719          310 DKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKE---KEIGAEISELVKQRDHLEAELKKVNLSLAAA  386 (503)
Q Consensus       310 dkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~E---kel~~EI~~LekqrdeLEAeLkkVn~sL~aA  386 (503)
                      +|++.|++-|    -|.+.+|.-.+.--++--+||..--.|+.++-   ||+..-+..|--.+.+|.++||.+.....-.
T Consensus       451 ~k~qqls~kl----~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~  526 (1118)
T KOG1029|consen  451 FKLQQLSGKL----QDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKET  526 (1118)
T ss_pred             HHHHHHhhhh----hhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCc
Confidence            3555543332    34555555555555666677766666655432   3333334444556778888888877666554


Q ss_pred             HHH---HHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhH
Q 010719          387 QAR---LRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSW  443 (503)
Q Consensus       387 ~aR---l~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW  443 (503)
                      .+|   |+.+++.|       ..|+.|||-+.|+|++.+.+-..|-++.++=..=|..+-
T Consensus       527 ~~~~s~L~aa~~~k-------e~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~  579 (1118)
T KOG1029|consen  527 TQRKSELEAARRKK-------ELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDV  579 (1118)
T ss_pred             chHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            443   34444444       468999999999999999999999999998887775543

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.96  E-value=51  Score=34.95  Aligned_cols=19  Identities=32%  Similarity=0.385  Sum_probs=9.6

Q ss_pred             CChhHHHHHHHHHHhhhcC
Q 010719          162 PNEEEISLLLEMFGLCLTG  180 (503)
Q Consensus       162 P~eeEvsLLlEiFglcL~G  180 (503)
                      ||-.=-|-|++....||+|
T Consensus        35 ~NG~GKStll~aI~~~l~G   53 (562)
T PHA02562         35 KNGAGKSTMLEALTFALFG   53 (562)
T ss_pred             CCCCCHHHHHHHHHHHHcC
Confidence            4444445555555555554

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.08  E-value=20  Score=34.99  Aligned_cols=74  Identities=20%  Similarity=0.338  Sum_probs=60.2

Q ss_pred             ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHH
Q 010719          349 NESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI  422 (503)
Q Consensus       349 ~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi  422 (503)
                      ++...--.++..||..|.++.+.|+.+.++++..+++....+....+.-++.++...+|.-.+..-.++|..-|
T Consensus        45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v  118 (251)
T PF11932_consen   45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFV  118 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444456788899999999999999999999999999999999888888888888888888877777776544

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=84.52  E-value=85  Score=36.29  Aligned_cols=72  Identities=26%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHhHHHHH---HHHHhhHHHHHHhhhchhHHHHHHhh
Q 010719          353 EKEKEIGAEISELVKQRDHLEAELKKV-----NLSLAAAQARLRNAQEERE---QFDEANDQIVEHLKTKEDELLKSIAA  424 (503)
Q Consensus       353 ~~Ekel~~EI~~LekqrdeLEAeLkkV-----n~sL~aA~aRl~~~rEERd---qFdEAnnqIv~hLk~KedELsksi~s  424 (503)
                      ..++++..-...++.+...++..+...     ...+..+..++.+..+..+   .|++.--+-+.+++.+...+...+..
T Consensus       593 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  672 (908)
T COG0419         593 ERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRR  672 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444     3333333333333333333   33333333344444444444444443

>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.39  E-value=35  Score=34.25  Aligned_cols=155  Identities=25%  Similarity=0.383  Sum_probs=112.3

Q ss_pred             HHhhhccC-----cchhhhhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010719          218 QTAITGLK-----MNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLK  292 (503)
Q Consensus       218 q~AisGLK-----~nAdiariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~~ea~k~al~qiRlcS~lE~lllk  292 (503)
                      |+||.++.     +.--|.+||+|.+.++.+|..++.-                                          
T Consensus        18 ~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~g------------------------------------------   55 (218)
T KOG1655|consen   18 QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTRPG------------------------------------------   55 (218)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCC------------------------------------------
Confidence            55666663     2334788999999999988888521                                          


Q ss_pred             hhhccCCCChhhHHHHhhHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHH
Q 010719          293 KKLLSYGDSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHL  372 (503)
Q Consensus       293 kk~~~~Gdspe~ha~kvdkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeL  372 (503)
                               |.-.+-|..-|+||-          -|++.|+-++--.-++|--.-++=..+.-|.-.+=+..|.--..++
T Consensus        56 ---------paq~~~KqrAlrVLk----------QKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~m  116 (218)
T KOG1655|consen   56 ---------PAQNALKQRALRVLK----------QKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEM  116 (218)
T ss_pred             ---------cchhHHHHHHHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     111223444556642          3678888778888889999888888899999999999999999999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhh-------hchhHHHHHHhhhhhhhhHHHHHHHhh
Q 010719          373 EAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLK-------TKEDELLKSIAACRVESDVLSTWINFL  439 (503)
Q Consensus       373 EAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk-------~KedELsksi~sc~vEA~vv~tWinFL  439 (503)
                      ..+-|+|||.      .+.+.+-|=.-.=+.++.|-+.|-       .-|+||......-..|++...+==++|
T Consensus       117 K~~ykkvnId------~IedlQDem~Dlmd~a~EiQE~Lgr~y~~peide~dL~aELdaL~~E~d~~~~~~~~~  184 (218)
T KOG1655|consen  117 KKQYKKVNID------KIEDLQDEMEDLMDQADEIQEVLGRNYNTPDIDEADLDAELDALGQELDMLEEDENYL  184 (218)
T ss_pred             HHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHHHHHhHhhccccccccc
Confidence            9999999996      566676666555566677777775       457888888887777777655444443

>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility

Probab=80.70  E-value=18  Score=34.68  Aligned_cols=148  Identities=20%  Similarity=0.276  Sum_probs=73.3

Q ss_pred             hhhhhHHHHHHHHHhHHhhhccCCchhhhhhhhhhhHHH-HHHHHHHHHHHHHHhhhhhhhhhhhhccCCCChhhHHHHh
Q 010719          231 ERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKAT-IEALKEALAQIRVCTRLEGLLLKKKLLSYGDSPEVHAQKV  309 (503)
Q Consensus       231 ariD~Ea~~L~~kl~~~~~~~~~s~~~~~~~~e~t~~a~-~ea~k~al~qiRlcS~lE~lllkkk~~~~Gdspe~ha~kv  309 (503)
                      .|.|  ...|++.||.+-.-+.....+   - -+.-..+ ...|.|-+-||=+.-.=-|+||-+=-=.       ...-+
T Consensus        31 tR~d--Vi~L~e~Ld~~L~~~~ar~~g---I-cpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde-------~~~~l   97 (189)
T PF10211_consen   31 TRQD--VIQLQEWLDKMLQQRQARETG---I-CPVREELYSQCFDELIRQVTIDCPERGLLLLRVRDE-------YRMTL   97 (189)
T ss_pred             CHHH--HHHHHHHHHHHHHHhcCCccc---c-cHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHH-------HHHHH
Confidence            4555  457777777665322111100   0 0111123 5589999999988433344444410000       01112


Q ss_pred             hHHHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Q 010719          310 DKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQAR  389 (503)
Q Consensus       310 dkLkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aR  389 (503)
                      ++.                     ..+-+.+..|=++|.-+....-.++..+|..|++.+.+|+.++..+.........+
T Consensus        98 ~~y---------------------~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~  156 (189)
T PF10211_consen   98 DAY---------------------QTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKR  156 (189)
T ss_pred             HHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222                     23333344454444444433345667777777777777777777776666665544


Q ss_pred             HHH--------hHHHHHHHHHhhHHHHHHhh
Q 010719          390 LRN--------AQEEREQFDEANDQIVEHLK  412 (503)
Q Consensus       390 l~~--------~rEERdqFdEAnnqIv~hLk  412 (503)
                      ...        ..+|=+.+-..|.|+-+.|+
T Consensus       157 ~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~  187 (189)
T PF10211_consen  157 EEELRQEEEKKHQEEIDFLKKQNQQLKAQLE  187 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            433        33344444444444444443

Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=80.20  E-value=86  Score=33.30  Aligned_cols=21  Identities=5%  Similarity=0.240  Sum_probs=14.6

Q ss_pred             ccCCChhHHHHHHHHHHhhhc
Q 010719          159 LEAPNEEEISLLLEMFGLCLT  179 (503)
Q Consensus       159 leaP~eeEvsLLlEiFglcL~  179 (503)
                      +.++..+=...|-++||+-..
T Consensus       145 ~~~~~~er~~il~~l~~~~~~  165 (562)
T PHA02562        145 MQLSAPARRKLVEDLLDISVL  165 (562)
T ss_pred             hcCChHhHHHHHHHHhCCHHH
Confidence            445566778888889985543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=80.17  E-value=26  Score=34.34  Aligned_cols=79  Identities=13%  Similarity=0.260  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHH
Q 010719          357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWI  436 (503)
Q Consensus       357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWi  436 (503)
                      .+..-+..|++|.++|+++|...+.+.++-.+.+.+.-       +.+++.+..|+.+-++|...+..-+.|.+.+.+=.
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~  162 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKV-------AQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL  162 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777777777777776666554333333322       23555666688888899888888777777666655


Q ss_pred             HhhHhh
Q 010719          437 NFLEDS  442 (503)
Q Consensus       437 nFLedt  442 (503)
                      .-+.++
T Consensus       163 ~~~~~~  168 (206)
T PRK10884        163 DDKQRT  168 (206)
T ss_pred             HHHHHH
Confidence            544443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	503
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.4 bits (192), Expect = 2e-15
 Identities = 75/451 (16%), Positives = 138/451 (30%), Gaps = 130/451 (28%)

Query: 125 LVLYYDADFGGEPLNFRDV--FLQSQALEAITVSMILEAPNEEEISLLLEMFGLCLTGGK 182
           ++  ++  F  +  + +DV    +S  L    +  I+ + +    +L L  F   L+  +
Sbjct: 21  ILSVFEDAFV-DNFDCKDVQDMPKS-ILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQE 76

Query: 183 E-VHHAITSSIQD----LATAISK-------------YQDEVL-----------VKREEL 213
           E V   +   ++     L + I                Q + L           V R + 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 214 LQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQASEKTTKATIEAL 273
               + A+  L+   ++             ++G+              S KT  A ++  
Sbjct: 137 YLKLRQALLELRPAKNVL------------IDGVL------------GSGKTWVA-LDVC 171

Query: 274 KEALAQ-----------IRVCTRLEGLLLKKKLLSYGDSPEVHAQKVDKLKVLSESLSNS 322
                Q           ++ C   E +L   + L Y   P     + D     +  L   
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSS--NIKLRIH 228

Query: 323 SVKAEKRISDHRSQKEEALKV-------RVVKA-NESSEKEKEIGAEISELVKQRDHLEA 374
           S++AE R        E  L V       +   A N        +  +I  L+  R     
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKI--LLTTRF---- 274

Query: 375 ELKKVNLSLAAAQARLRNAQEEREQF--DEANDQIVEHLKTKEDEL-----------LKS 421
             K+V   L+AA     +          DE    ++++L  +  +L           L  
Sbjct: 275 --KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332

Query: 422 IAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHE--DYFVNLAI------ 473
           IA      D L+TW N+      + C ++    +     L   E    F  L++      
Sbjct: 333 IAE--SIRDGLATWDNWKH----VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 474 ---SLLSAYKKELGPSISRIGKFVENLKNLS 501
               LLS    ++  S   +   V  L   S
Sbjct: 387 IPTILLSLIWFDVIKSDVMV--VVNKLHKYS 415

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 7e-10
 Identities = 76/588 (12%), Positives = 169/588 (28%), Gaps = 171/588 (29%)

Query: 6   RNAVNKA-VE--VGNKNNLTRT------VKNYADNVVHQA-GQAVAEGAKILQDRIGVRS 55
           ++ ++K  ++  + +K+ ++ T      + +  + +V +   + +    K L   I    
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102

Query: 56  FKSVNQTIRRLEEAALSCRG-----------PERVMLLRRWLTVLKEVEK--LYGLLSED 102
            +    T   +E+                   +  + LR+ L  L+  +   + G+L   
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL--- 159

Query: 103 KEKLQEQLDAFDEAKDGPRKPSLVLYYDADFGGEPLNFRDVFLQSQALEAITVSMILEAP 162
                           G  K  + L     +  +      +F        + +       
Sbjct: 160 ----------------GSGKTWVALDVCLSYKVQCKMDFKIFW-------LNLK------ 190

Query: 163 NEEEISLLLEMF-GLC------LTGGKEVHHAITSSIQDLATAISKYQDE--------VL 207
           N      +LEM   L        T   +    I   I  +   + +            VL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 208 --VKREELLQ-F---AQTAITGLKMNSDIERIDAEASDLKKRLEGMKALQNSSNEDLEQA 261
             V+  +    F    +  +T        +  D  ++     +         + ++++  
Sbjct: 251 LNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 262 SEKTTKATIEALKEALAQI--RVCTRLEGLLLKKKLLSYGDSPEVHAQKVDK-----LKV 314
             K      + L   +     R  + +    ++  L ++ +   V+  K+       L V
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 315 LS--------ESLS--NSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEI-- 362
           L         + LS    S      I          L   ++  +        +  ++  
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAH----IP------TILLS--LIWFDVIKSDVMVVVNKLHK 413

Query: 363 -SELVKQRD-------HLEAELKKVNLSLAAAQARLRNAQEEREQFD------EANDQ-- 406
            S + KQ          +  ELK    +  A    + +     + FD         DQ  
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 407 ---IVEHLKTKE-DELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELV 462
              I  HLK  E  E             +      FL+  +        L++K      +
Sbjct: 474 YSHIGHHLKNIEHPE----------RMTLFRMV--FLDFRF--------LEQK------I 507

Query: 463 KHEDYFVNLAISLLSA------YKKELGPS-------ISRIGKFVENL 497
           +H+    N + S+L+       YK  +  +       ++ I  F+  +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 38/293 (12%), Positives = 93/293 (31%), Gaps = 22/293 (7%)

Query: 189  TSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLKKRLEGMK 248
              +IQ              ++R       Q       +    + +      L+  L G  
Sbjct: 794  AITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYL 853

Query: 249  ALQNSSNEDLE------QASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDSP 302
                      E      Q   +   A +   +   A + +      ++ K++L       
Sbjct: 854  VRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL----KKL 909

Query: 303  EVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEE------ALKVRVVKANESSEKEK 356
            ++ A+ V++ K L   L N  ++ +++I +   + +        L++      E    + 
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 357  E----IGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLK 412
            E       E      +   L+ E+ K+   L   Q   +  +E  +++    +Q+V  LK
Sbjct: 970  ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029

Query: 413  TKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHE 465
             +   L        +   +        E        + +  E  +++E ++++
Sbjct: 1030 EQNTLLKTEKE--ELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 47/263 (17%), Positives = 106/263 (40%), Gaps = 26/263 (9%)

Query: 240  LKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYG 299
            L K     + +Q   +E+L++  E+  KA  EA  + L Q       E  LL++KL +  
Sbjct: 849  LLKVTRQEEEMQAK-DEELQRTKERQQKA--EAELKELEQKHTQLCEEKNLLQEKLQAET 905

Query: 300  DSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIG 359
            +      +   +L    + L     + E RI +   + ++              ++K++ 
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL-----------QAEKKKMQ 954

Query: 360  AEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQI---VEHLKTKED 416
             ++ +L +Q +  EA  +K+ L    A  +++  +++    ++ N+++    + L+ +  
Sbjct: 955  QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 417  ELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSEELVKHEDYFVNLAISLL 476
            +L  ++A    ++  L+   N  E          EL+ +   EE  + E   +      L
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHES------MISELEVRLKKEEKSRQE---LEKIKRKL 1065

Query: 477  SAYKKELGPSISRIGKFVENLKN 499
                 +L   I+ +   +  LK 
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKA 1088

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 26/230 (11%)

Query: 182  KEVHHAITSSIQDLATAISKYQDEV--LVKREELLQFAQTAITGLKMNSDIERIDAEASD 239
            +         I+ +   I   +D+   L K  +LL+         +  SD+    AE  +
Sbjct: 975  QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE---------ERVSDLTTNLAEEEE 1025

Query: 240  LKKRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYG 299
              K L  +K    S   +LE   +K  K+  E  K                L+ +     
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK------------LEGESSDLH 1073

Query: 300  DSPEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIG 359
            +       ++ +LK            A  R+ D  SQK  ALK      +  S+ ++++ 
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

Query: 360  AE---ISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQ 406
            +E    ++  KQ+  L  EL+ +   L          QE R    + +D 
Sbjct: 1134 SEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 48/323 (14%), Positives = 110/323 (34%), Gaps = 29/323 (8%)

Query: 182  KEVHHAITSSIQDLATAISKYQDEVLVKREELLQFAQTAITGLKMNSDIERIDAEASDLK 241
            ++ H  +      L   +    +      E  ++ A           ++E I  E     
Sbjct: 884  EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ-------ELEEILHEMEARI 936

Query: 242  KRLEGMKALQNSSNEDLEQASEKTTKATIEALKEALAQIRVCTRLEGLLLKKKLLSYGDS 301
            +  E       +  + ++Q      +  +E  + A  +++    LE +    K+    D 
Sbjct: 937  EEEEERSQQLQAEKKKMQQQMLDLEE-QLEEEEAARQKLQ----LEKVTADGKIKKMEDD 991

Query: 302  PEVHAQKVDKLKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAE 361
              +   + +KL    + L          +++   + +   K++    N+      E+   
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLK----NKHESMISELEVR 1047

Query: 362  ISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKS 421
            + +  K R  LE   +K+       +    +  E+  +      ++   L  KE+EL  +
Sbjct: 1048 LKKEEKSRQELEKIKRKL-------EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 422  IAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSE--ELVKHEDYFVNLAISLLSAY 479
            +A    E+   +  +  + +   L+    +L+E   SE     K E    +L+   L A 
Sbjct: 1101 LARLEDETSQKNNALKKIRE---LESHISDLQEDLESEKAARNKAEKQKRDLS-EELEAL 1156

Query: 480  KKELGPSISRIGKFVENLKNLSE 502
            K EL  ++       E   +  +
Sbjct: 1157 KTELEDTLDTTATQQELRGSDYK 1179

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	503
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.86
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.94
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	92.12
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	91.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	83.22
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.33
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	82.24
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	80.25

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.86  E-value=1  Score=42.59  Aligned_cols=147  Identities=6%  Similarity=0.065  Sum_probs=84.5

Q ss_pred             hhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 010719          319 LSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEERE  398 (503)
Q Consensus       319 LanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERd  398 (503)
                      +-+-+.+...||-..+.|.-     -|+...|..++.+    ||..++++...||.++..+...+......+..+.++.+
T Consensus        65 ~e~~i~~~~~ri~~~~~~l~-----~v~~~kE~~aL~k----Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~  135 (256)
T 3na7_A           65 NEQTLQDTNAKIASIQKKMS-----EIKSERELRSLNI----EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEML  135 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----HCSSSSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----ccCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555544442     2445556655554    66677777777777777777777766666666666666


Q ss_pred             HHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHHhhhHHHHHHhhhhH------HHhhhHhHHHHHH
Q 010719          399 QFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVLQCSQMELKEKQVSE------ELVKHEDYFVNLA  472 (503)
Q Consensus       399 qFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~lq~~~~e~kekq~~d------eler~~~~f~~l~  472 (503)
                      ...+.-......+.....++.+.+.....+...+..   -++.  .|=..|..++... ++      +=.+|+.||+.|-
T Consensus       136 ~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~---~i~~--~lL~~Yerir~~~-~g~avv~v~~~~C~GC~~~lp  209 (256)
T 3na7_A          136 ELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE---KTEP--KIYSFYERIRRWA-KNTSIVTIKKQACGGCFIRLN  209 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TSCH--HHHHHHHHHHHHH-GGGSEEECBTTBCTTTCCBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCH--HHHHHHHHHHHhC-CCceEEEeeCCccCCCCeeeC
Confidence            555555555555555555555555544444433322   2222  3345788887643 21      1248999999887


Q ss_pred             HHHHHHHH
Q 010719          473 ISLLSAYK  480 (503)
Q Consensus       473 ~~~ls~~k  480 (503)
                      -+.++.-+
T Consensus       210 pq~~~~i~  217 (256)
T 3na7_A          210 DKIYTEVL  217 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.94  E-value=1  Score=51.21  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=64.9

Q ss_pred             HHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHHhhhhhhhhHHHHHHHhhHhhHHH
Q 010719          366 VKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSIAACRVESDVLSTWINFLEDSWVL  445 (503)
Q Consensus       366 ekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi~sc~vEA~vv~tWinFLedtW~l  445 (503)
                      ++++.+++++++.+...+......+..+..|....++.+.+..+.|+.|...|.+....-+-..+-+..+|--.+..|..
T Consensus       976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~ 1055 (1080)
T 2dfs_A          976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555566666667777778888888899999999999999999999999999999888888888888888777764


Q ss_pred             h
Q 010719          446 Q  446 (503)
Q Consensus       446 q  446 (503)
                      .
T Consensus      1056 ~ 1056 (1080)
T 2dfs_A         1056 T 1056 (1080)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=92.12  E-value=8.1  Score=36.49  Aligned_cols=64  Identities=9%  Similarity=0.087  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhhchhHHHHHH
Q 010719          359 GAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQFDEANDQIVEHLKTKEDELLKSI  422 (503)
Q Consensus       359 ~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdqFdEAnnqIv~hLk~KedELsksi  422 (503)
                      -.+|.++..+.++++++++.+...+....+.+...+.+++.--..-+.=+..|..+-++|...|
T Consensus       110 E~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i  173 (256)
T 3na7_A          110 NREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKT  173 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3455556666666666666666666666666666655555444444444555555555555543

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.49  E-value=0.83  Score=39.31  Aligned_cols=54  Identities=22%  Similarity=0.417  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH------------HHHhhHHHHHH
Q 010719          357 EIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNAQEEREQ------------FDEANDQIVEH  410 (503)
Q Consensus       357 el~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~rEERdq------------FdEAnnqIv~h  410 (503)
                      .+..+|..|+.++...+++++++...|...+++...+..++.+            |+|||+-+..+
T Consensus         9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a   74 (97)
T 2eqb_B            9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA   74 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3667888888888888888888888888888888888877765            88998877665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.22  E-value=14  Score=37.41  Aligned_cols=24  Identities=13%  Similarity=0.325  Sum_probs=14.5

Q ss_pred             CcchhhhhhhhHHHHHHHHHhHHh
Q 010719          225 KMNSDIERIDAEASDLKKRLEGMK  248 (503)
Q Consensus       225 K~nAdiariD~Ea~~L~~kl~~~~  248 (503)
                      ++.+++..++.++..|+.+++...
T Consensus       453 ~l~~e~~~~~~~i~~l~~~~~~~~  476 (597)
T 3oja_B          453 QLEAEVNELRAEVQQLTNEQIQQE  476 (597)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566666666666666665544

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.33  E-value=25  Score=44.82  Aligned_cols=69  Identities=17%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             HHHhhH----HHHHHHHhhhchHHHhHhhhhhhhhhHHhhhhhhhccccchHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010719          306 AQKVDK----LKVLSESLSNSSVKAEKRISDHRSQKEEALKVRVVKANESSEKEKEIGAEISELVKQRDHLEAELKK  378 (503)
Q Consensus       306 a~kvdk----LkvlsEsLanS~skAEkrI~d~R~QKEeAl~fRv~K~~Ev~~~Ekel~~EI~~LekqrdeLEAeLkk  378 (503)
                      ++.|++    |.++-.-|.....+||+.+..--.++++|-.    |..++.+.|+++..+-.+.++++++-|++|++
T Consensus      1933 ~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~----~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~ 2005 (3245)
T 3vkg_A         1933 EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEI----KQKDARELQVQLDVRNKEIAVQKVKAYADLEK 2005 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345554    4445556777788888877766666666543    22355556666665555566666655544444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=82.24  E-value=34  Score=32.26  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             chHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHh
Q 010719          351 SSEKEKEIGAEISELVKQRDHLEAELKKVNLSLAAAQARLRNA  393 (503)
Q Consensus       351 v~~~Ekel~~EI~~LekqrdeLEAeLkkVn~sL~aA~aRl~~~  393 (503)
                      -.+.|.|+-.||..++|+-.+|...+.++..-+.....++...
T Consensus        40 SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~   82 (189)
T 2v71_A           40 SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ   82 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467778888888888887777777777776666666555443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=80.25  E-value=6.6  Score=39.38  Aligned_cols=56  Identities=7%  Similarity=0.234  Sum_probs=41.8

Q ss_pred             hhhhhhhhhhhhHHHHHHhccCCChhHHHHHHHHHH-hhhcCcHH-HHHHHHHhHHHHHH
Q 010719          140 FRDVFLQSQALEAITVSMILEAPNEEEISLLLEMFG-LCLTGGKE-VHHAITSSIQDLAT  197 (503)
Q Consensus       140 FrdVFL~SqALE~I~lSmileaP~eeEvsLLlEiFg-lcL~GGke-Vh~aivssiqdLA~  197 (503)
                      +..|+-+.+++-.|+.|  +.+|+..=..+.+|+++ +|+.+|.+ +|..+++++...+.
T Consensus        92 l~~vl~~~~~i~~l~~s--L~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           92 IKTMLETEEGILLLVRA--MDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHSSSHHHHHHHT--CCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHH--hCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            44566666777666665  57888888888999876 89986533 79999999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	503
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	83.36

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=83.36  E-value=6.7  Score=37.24  Aligned_cols=80  Identities=24%  Similarity=0.349  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH---HHHHHHhHHHH------HHHHHhhH---HHHHHhhhchhHHHHHHh
Q 010719          356 KEIGAEISELVKQRDHLEAELKKVNLSLAAA---QARLRNAQEER------EQFDEAND---QIVEHLKTKEDELLKSIA  423 (503)
Q Consensus       356 kel~~EI~~LekqrdeLEAeLkkVn~sL~aA---~aRl~~~rEER------dqFdEAnn---qIv~hLk~KedELsksi~  423 (503)
                      +++..||..|+.+.+.|+++.+.....+..-   ...+.+++-+-      ..|+.|..   ..+-.|+.+.+.+.+...
T Consensus       285 ~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~~~  364 (387)
T d1qvra2         285 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLR  364 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSS
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhchHHHHHHHHHHHHHHhc
Confidence            5666777777777777777666655544332   22333322221      12333332   234556666555554432


Q ss_pred             ---------hhhhhhhHHHHH
Q 010719          424 ---------ACRVESDVLSTW  435 (503)
Q Consensus       424 ---------sc~vEA~vv~tW  435 (503)
                               +-...|.||+.|
T Consensus       365 ~~~lvr~~VteedIA~VVSrW  385 (387)
T d1qvra2         365 GARFVRLEVTEEDIAEIVSRW  385 (387)
T ss_dssp             SCSSCCSEECHHHHHHHHHTT
T ss_pred             CCCCCcCccCHHHHHHHHHhh
Confidence                     225578888887