Citrus Sinensis ID: 010723

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
ccEEEEEcccccHHHHHccccEEEEcHHHHHHHHHHHcccccEEccccEEEEEEcccEEEEEEccccEEEccEEEEcccccHHHHcccccccccccccEEEEEEEEccccccccccEEEEEEcccEEEEEEEccccEEEEEEEEEcccccccccccHHHHHHHHHccccHHHHHHHHccccccEEEEEccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccHHHccccHHHHHHHHcccccccccccccccccccccHHHHHcccccHHHHHHccccEEEEEccccccccccEEEccccccccEEEcccccccccccEEEEcccccccccEEEEEcccEEEEEEcccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEcccccccccccccccccccc
cccEEEEcccccHHHHccccEEEEEEHHHHHHHHHHHccccEEEcccEEEEEEEcccEEEEEEccccEEEEEEEEEcccHHHHHHHHHcccccccEcEEEEEEEEEcccccccccccEEEEEccccEEEEEEccccEEEEEEEEcccccccccccccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcHHHHHHHHcccEEEEEccccccccccEEEEEccccccEEEEccccccccccEEEEccccccHccEEEEEccccEEEEEccccccEEEEcccccEEEccccccEEEccccEEEEccccEEEEEEEEEEccccccHHccccccEEEcc
mftryikfdtftpaaekglpvtRVISRMTLQQILAKAVGdeiilnesnvidfkdhgdKVSVVLENgqcyagdlligadgIWSKVrknlfgpqeaiysgytcytgiadfvpadiesvgYRVFLGHKqyfvssdvgagkmQWYAfhkepaggvdgpegkKERLLKIFEGWCDNVVDLILATDEEAILRrdiydrtpiftwgrgrvtllgdsvhamqpnlgqggcmaiEDGYQLAVELEKACkksnesktpIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLgvglgplsfltkfriphpgrvggrFFIDLAMPLMLSWVlggnssklegrspccklsdkaSDNLRTWFRDDDALEramngewflvpsgsenvvsqpiylsvshenepyligseshedfsrtsivipsaqvsKMHARISYKDGAFYLIDLqsehgtyvtdnegrryrvssnfparfrpsdtiefgsdkkaIFRVKVigtppnnnserKEAGEILQAV
mftryikfdtftpaaekglpvTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKepaggvdgpeGKKERLLKIFEGWCDNVVDLILATdeeailrrdiydrtpiftwGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACkksnesktpidiVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGseshedfsrTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGtyvtdnegrryrvssnfparfrpsdtiefgsdkkaifrvkvigtppnnnserkeageilqav
MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
***RYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG*******KERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACK*******PIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNS*******PCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIG******FSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVS**F********TIEFGSDKKAIFRVKVI********************
MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRS**************TWFRDDDALERAMNGEWFLVPSGSEN**SQPI*LSVSHENEP***************IVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK**********************
MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
*FTRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNN*************
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFTRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query502 2.2.26 [Sep-21-2011]
O81360661 Zeaxanthin epoxidase, chl N/A no 0.982 0.745 0.767 0.0
Q40412663 Zeaxanthin epoxidase, chl N/A no 0.978 0.740 0.744 0.0
Q9FGC7667 Zeaxanthin epoxidase, chl yes no 0.992 0.746 0.732 0.0
P93236669 Zeaxanthin epoxidase, chl N/A no 0.984 0.738 0.744 0.0
Q0JCU7659 Zeaxanthin epoxidase, chl yes no 0.982 0.748 0.718 0.0
Q96375660 Zeaxanthin epoxidase, chl N/A no 0.966 0.734 0.710 0.0
Q9F131394 3-hydroxybenzoate 6-hydro N/A no 0.478 0.609 0.304 3e-22
A6T923384 FAD-dependent urate hydro yes no 0.460 0.601 0.323 3e-22
B6D1N4384 FAD-dependent urate hydro yes no 0.460 0.601 0.323 1e-21
P86491385 6-hydroxynicotinate 3-mon yes no 0.454 0.592 0.286 5e-20
>sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function desciption
 Score =  794 bits (2050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/499 (76%), Positives = 432/499 (86%), Gaps = 6/499 (1%)

Query: 3   TRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVV 62
           T Y+KFDTFTPA E+GLPVTRVISR+ LQQILA+AVG+EII+N+SNV++F+D GDKV+V+
Sbjct: 168 TWYVKFDTFTPAVERGLPVTRVISRIALQQILARAVGEEIIINDSNVVNFEDLGDKVNVI 227

Query: 63  LENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFL 122
           LENGQ Y GD+L+GADGIWSKVRKNLFG  EA+YSGYTCYTGIADFVPADI SVGYRVFL
Sbjct: 228 LENGQRYEGDMLVGADGIWSKVRKNLFGLNEAVYSGYTCYTGIADFVPADINSVGYRVFL 287

Query: 123 GHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 182
           GHKQYFVSSDVG GKMQWYAFHKE  GGVD P GKKERLLKIFEGWCDNV+DL+LAT+E+
Sbjct: 288 GHKQYFVSSDVGGGKMQWYAFHKESPGGVDSPNGKKERLLKIFEGWCDNVIDLLLATEED 347

Query: 183 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKS 242
           AILRRDIYDRTPI TWG+G VTLLGDSVHAMQPN+GQGGCMAIEDGYQLA+EL+KA KKS
Sbjct: 348 AILRRDIYDRTPILTWGKGHVTLLGDSVHAMQPNMGQGGCMAIEDGYQLALELDKAWKKS 407

Query: 243 NESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 302
           +E+ TP+D+ S+L+SYE +RRLRVA+IHG+AR AA+MASTYKAYLGVGLGPLSFLTKFRI
Sbjct: 408 SETGTPVDVASSLRSYENSRRLRVAIIHGMARMAALMASTYKAYLGVGLGPLSFLTKFRI 467

Query: 303 PHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALER 362
           PHPGRVGGR FID AMPLMLSWVLGGNSSKLEGRSP C+LSDKASD LR WF DDDALER
Sbjct: 468 PHPGRVGGRVFIDKAMPLMLSWVLGGNSSKLEGRSPSCRLSDKASDQLRNWFEDDDALER 527

Query: 363 AMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHAR 422
           A++GEW+L+P G +N  SQ I L+   +N P +IGS  H D S  SI IP  QVS+MHAR
Sbjct: 528 AIDGEWYLIPCGQDNDASQLICLNRDEKN-PCIIGSAPHGDVSGISIAIPKPQVSEMHAR 586

Query: 423 ISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 482
           ISYKDGAFYL DL+SEHGT++ D EG+RYRV  NFPARFRPSD IE GS K A FRVKV+
Sbjct: 587 ISYKDGAFYLTDLRSEHGTWIADIEGKRYRVPPNFPARFRPSDAIEIGSQKVA-FRVKVM 645

Query: 483 GTPPNNNSERKEAGEILQA 501
            + P   S  KE   ILQA
Sbjct: 646 KSSP--GSVEKEG--ILQA 660
Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin.
Prunus armeniaca (taxid: 36596)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 9EC: 0
>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1 Back     alignment and function description
>sp|P93236|ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=ZEP PE=2 SV=1 Back     alignment and function description
>sp|Q96375|ABA2_CAPAN Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1 Back     alignment and function description
>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1 Back     alignment and function description
>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1 Back     alignment and function description
>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1 Back     alignment and function description
>sp|P86491|6HN3M_PSEFL 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas fluorescens PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
290361322 664 zeaxanthin epoxidase [Citrus unshiu] 0.992 0.75 0.995 0.0
290361326 664 zeaxanthin epoxidase [Citrus sinensis] 0.992 0.75 0.991 0.0
17402597 664 zeaxanthin epoxidase [Citrus unshiu] 0.992 0.75 0.993 0.0
190576749 664 zeaxanthin epoxidase [Citrus maxima] 0.992 0.75 0.973 0.0
290361328 664 zeaxanthin epoxidase [Citrus sinensis] 0.992 0.75 0.973 0.0
290361324 664 zeaxanthin epoxidase [Citrus unshiu] 0.992 0.75 0.973 0.0
225438718 658 PREDICTED: zeaxanthin epoxidase, chlorop 0.982 0.749 0.795 0.0
224084342 692 predicted protein [Populus trichocarpa] 0.992 0.719 0.739 0.0
38112202 658 zeaxanthin epoxidase [Vitis vinifera] 0.982 0.749 0.795 0.0
399158079 658 zeaxanthin epoxidase 1 [Vitis vinifera] 0.982 0.749 0.793 0.0
>gi|290361322|dbj|BAI79257.1| zeaxanthin epoxidase [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/498 (99%), Positives = 496/498 (99%)

Query: 5   YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE 64
           YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE
Sbjct: 167 YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE 226

Query: 65  NGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGH 124
           NGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGH
Sbjct: 227 NGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGH 286

Query: 125 KQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAI 184
           KQYFVSSDVGAGKMQWYAFHKEPAGGVD PEGKKERLLKIFEGWCDNVVDLILATDEEAI
Sbjct: 287 KQYFVSSDVGAGKMQWYAFHKEPAGGVDDPEGKKERLLKIFEGWCDNVVDLILATDEEAI 346

Query: 185 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNE 244
           LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNE
Sbjct: 347 LRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNE 406

Query: 245 SKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 304
           SKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH
Sbjct: 407 SKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466

Query: 305 PGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAM 364
           PGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAM
Sbjct: 467 PGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAM 526

Query: 365 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARIS 424
           NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDF RTSIVIPSAQVSKMHARIS
Sbjct: 527 NGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFPRTSIVIPSAQVSKMHARIS 586

Query: 425 YKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGT 484
           YKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGT
Sbjct: 587 YKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGT 646

Query: 485 PPNNNSERKEAGEILQAV 502
           PPNNNSERKEAGEILQAV
Sbjct: 647 PPNNNSERKEAGEILQAV 664

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|290361326|dbj|BAI79259.1| zeaxanthin epoxidase [Citrus sinensis] Back     alignment and taxonomy information
>gi|17402597|dbj|BAB78733.1| zeaxanthin epoxidase [Citrus unshiu] Back     alignment and taxonomy information
>gi|190576749|gb|ACE79170.1| zeaxanthin epoxidase [Citrus maxima] Back     alignment and taxonomy information
>gi|290361328|dbj|BAI79260.1| zeaxanthin epoxidase [Citrus sinensis] Back     alignment and taxonomy information
>gi|290361324|dbj|BAI79258.1| zeaxanthin epoxidase [Citrus unshiu] Back     alignment and taxonomy information
>gi|225438718|ref|XP_002282543.1| PREDICTED: zeaxanthin epoxidase, chloroplastic [Vitis vinifera] gi|296082420|emb|CBI21425.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224084342|ref|XP_002307265.1| predicted protein [Populus trichocarpa] gi|222856714|gb|EEE94261.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38112202|gb|AAR11195.1| zeaxanthin epoxidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|399158079|gb|AFP28801.1| zeaxanthin epoxidase 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query502
TAIR|locus:2158083667 ABA1 "ABA DEFICIENT 1" [Arabid 0.990 0.745 0.733 9.8e-206
UNIPROTKB|Q0JCU7659 ZEP "Zeaxanthin epoxidase, chl 0.980 0.746 0.720 3.6e-192
UNIPROTKB|A6T923384 hpxO "FAD-dependent urate hydr 0.476 0.622 0.318 3.5e-21
UNIPROTKB|B6D1N4384 hpxO "FAD-dependent urate hydr 0.476 0.622 0.318 1.6e-20
UNIPROTKB|B5B0J6384 hpxO "FAD-dependent urate hydr 0.503 0.658 0.296 1.6e-19
UNIPROTKB|Q88FY2382 nicC "6-hydroxynicotinate 3-mo 0.420 0.552 0.308 1.4e-17
UNIPROTKB|P86491385 P86491 "6-hydroxynicotinate 3- 0.428 0.558 0.291 9.8e-17
TAIR|locus:2060584427 CTF2B "AT2G29720" [Arabidopsis 0.460 0.540 0.308 2.7e-16
TIGR_CMR|SPO_3692395 SPO_3692 "monooxygenase, putat 0.478 0.607 0.284 4.3e-16
TAIR|locus:2058723439 CTF2A "AT2G35660" [Arabidopsis 0.452 0.517 0.307 2.4e-15
TAIR|locus:2158083 ABA1 "ABA DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1990 (705.6 bits), Expect = 9.8e-206, P = 9.8e-206
 Identities = 366/499 (73%), Positives = 428/499 (85%)

Query:     3 TRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVV 62
             T Y+KFDTFTPAA +GLPVTRVISRMTLQQILA+AVG+++I NESNV+DF+D GDKV+VV
Sbjct:   168 TWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVV 227

Query:    63 LENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFL 122
             LENGQ Y GDLL+GADGIWSKVR NLFG  EA YSGYTCYTGIADF+PADIESVGYRVFL
Sbjct:   228 LENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFL 287

Query:   123 GHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 182
             GHKQYFVSSDVG GKMQWYAFH+EPAGG D P G K+RL +IF+GWCDNV+DL+ AT+EE
Sbjct:   288 GHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEE 347

Query:   183 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKS 242
             AILRRDIYDR+P FTWG+GRVTLLGDS+HAMQPN+GQGGCMAIED +QLA+EL++A K+S
Sbjct:   348 AILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQS 407

Query:   243 NESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 302
              E+ TP+D+VS+LK YE +RRLRVA+IH +AR AA+MASTYKAYLGVGLGPLSFLTKFR+
Sbjct:   408 VETTTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRV 467

Query:   303 PHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALER 362
             PHPGRVGGRFF+D+AMP ML WVLGGNS KL+GR P C+L+DKA D LR WF DDDALER
Sbjct:   468 PHPGRVGGRFFVDIAMPSMLDWVLGGNSEKLQGRPPSCRLTDKADDRLREWFEDDDALER 527

Query:   363 AMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHAR 422
              + GEW+L+P G +  VS+ + L+   E++P ++GSE  +DF    IVIPS+QVSKMHAR
Sbjct:   528 TIKGEWYLIPHGDDCCVSETLCLT-KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHAR 586

Query:   423 ISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 482
             + YKDGAF+L+DL+SEHGTYVTDNEGRRYR + NFPARFR SD IEFGSDKKA FRVKVI
Sbjct:   587 VIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVI 646

Query:   483 G-TPPNNNSERKEAGEILQ 500
               TP +         ++LQ
Sbjct:   647 RKTPKSTRKNESNNDKLLQ 665
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IEA;IDA
GO:0009540 "zeaxanthin epoxidase [overall
GO:0009688 "abscisic acid biosynthetic process" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006970 "response to osmotic stress" evidence=IMP
GO:0009414 "response to water deprivation" evidence=IMP
GO:0010182 "sugar mediated signaling pathway" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009408 "response to heat" evidence=IMP
GO:0010114 "response to red light" evidence=IEP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0016123 "xanthophyll biosynthetic process" evidence=IMP
UNIPROTKB|Q0JCU7 ZEP "Zeaxanthin epoxidase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)] Back     alignment and assigned GO terms
UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)] Back     alignment and assigned GO terms
UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)] Back     alignment and assigned GO terms
UNIPROTKB|Q88FY2 nicC "6-hydroxynicotinate 3-monooxygenase" [Pseudomonas putida KT2440 (taxid:160488)] Back     alignment and assigned GO terms
UNIPROTKB|P86491 P86491 "6-hydroxynicotinate 3-monooxygenase" [Pseudomonas fluorescens (taxid:294)] Back     alignment and assigned GO terms
TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3692 SPO_3692 "monooxygenase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81360ABA2_PRUAR1, ., 1, 4, ., 1, 3, ., 9, 00.76750.98200.7458N/Ano
Q0JCU7ZEP_ORYSJ1, ., 1, 4, ., 1, 3, ., 9, 00.71880.98200.7481yesno
Q96375ABA2_CAPAN1, ., 1, 4, ., 1, 3, ., 9, 00.71040.96610.7348N/Ano
Q40412ABA2_NICPL1, ., 1, 4, ., 1, 3, ., 9, 00.74490.97800.7405N/Ano
P93236ABA2_SOLLC1, ., 1, 4, ., 1, 3, ., 9, 00.74440.98400.7384N/Ano
Q9FGC7ZEP_ARATH1, ., 1, 4, ., 1, 3, ., 9, 00.7320.99200.7466yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.130.963
3rd Layer1.14.13.900.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ZEP
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (658 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037718001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (306 aa)
     •• 0.925
GSVIVG00007662001
SubName- Full=Chromosome undetermined scaffold_197, whole genome shotgun sequence; (479 aa)
     •• 0.925
bch1
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (299 aa)
     •• 0.925
GSVIVG00037315001
SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (497 aa)
     •• 0.908
PDS1
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (582 aa)
      • 0.483
FLC
SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (68 aa)
      • 0.481
GPPS
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (422 aa)
      • 0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
PLN02927668 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa 0.0
PRK06753373 PRK06753, PRK06753, hypothetical protein; Provisio 4e-34
PRK08163396 PRK08163, PRK08163, salicylate hydroxylase; Provis 4e-32
COG0654387 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox 1e-27
PRK06847375 PRK06847, PRK06847, hypothetical protein; Provisio 5e-27
PRK07538413 PRK07538, PRK07538, hypothetical protein; Provisio 2e-23
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 7e-18
PRK06475400 PRK06475, PRK06475, salicylate hydroxylase; Provis 3e-17
TIGR03219414 TIGR03219, salicylate_mono, salicylate 1-monooxyge 2e-16
pfam0049867 pfam00498, FHA, FHA domain 2e-14
PRK07588391 PRK07588, PRK07588, hypothetical protein; Provisio 1e-11
smart0024052 smart00240, FHA, Forkhead associated domain 6e-09
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 1e-08
pfam01494349 pfam01494, FAD_binding_3, FAD binding domain 2e-07
PRK07236386 PRK07236, PRK07236, hypothetical protein; Provisio 2e-06
PRK07045388 PRK07045, PRK07045, putative monooxygenase; Review 3e-05
PRK08255 765 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; R 4e-05
TIGR01988387 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd 6e-05
PRK07333403 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h 9e-05
PRK05868372 PRK05868, PRK05868, hypothetical protein; Validate 2e-04
TIGR03354 396 TIGR03354, VI_FHA, type VI secretion system FHA do 3e-04
TIGR01988387 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd 4e-04
COG3456 430 COG3456, COG3456, Predicted component of the type 4e-04
TIGR01984382 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy 6e-04
PRK06183500 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr 6e-04
PRK06126545 PRK06126, PRK06126, hypothetical protein; Provisio 0.002
PRK06185407 PRK06185, PRK06185, hypothetical protein; Provisio 0.002
PRK05868372 PRK05868, PRK05868, hypothetical protein; Validate 0.004
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information 
 Score =  791 bits (2044), Expect = 0.0
 Identities = 366/499 (73%), Positives = 429/499 (85%), Gaps = 2/499 (0%)

Query: 3   TRYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVV 62
           + Y+KFDTFTPAA +GLPVTRVISRMTLQQILA+AVG+++I NESNV+DF+D GDKV+VV
Sbjct: 169 SWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVV 228

Query: 63  LENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFL 122
           LENGQ Y GDLL+GADGIWSKVR NLFG  EA YSGYTCYTGIADF+PADIESVGYRVFL
Sbjct: 229 LENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFL 288

Query: 123 GHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE 182
           GHKQYFVSSDVG GKMQWYAFH+EPAGG D P G K+RL +IF+GWCDNV+DL+ AT+E+
Sbjct: 289 GHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEED 348

Query: 183 AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKS 242
           AILRRDIYDR+P FTWG+GRVTLLGDS+HAMQPN+GQGGCMAIED +QLA+EL++A K+S
Sbjct: 349 AILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQS 408

Query: 243 NESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 302
            E+ TP+D+VS+LK YE +RRLRVA+IH +AR AA+MASTYKAYLGVGLGPLSFLTKFR+
Sbjct: 409 VETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRV 468

Query: 303 PHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALER 362
           PHPGRVGGRFF+D+AMPLML WVLGGNS KLEGR P C+L+DKA D LR WF DDDALER
Sbjct: 469 PHPGRVGGRFFVDIAMPLMLDWVLGGNSEKLEGRPPSCRLTDKADDRLREWFEDDDALER 528

Query: 363 AMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHAR 422
            + GEW+L+P G +  VS+ + L+   E++P ++GSE  +DF    IVIPS+QVSKMHAR
Sbjct: 529 TIKGEWYLIPHGDDCCVSETLCLT-KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHAR 587

Query: 423 ISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI 482
           + YKDGAF+L+DL+SEHGTYVTDNEGRRYR + NFPARFR SD IEFGSDKKA FRVKVI
Sbjct: 588 VIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVI 647

Query: 483 -GTPPNNNSERKEAGEILQ 500
             TP +         ++LQ
Sbjct: 648 RKTPKSTRKNESNNDKLLQ 666

Length = 668
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase Back     alignment and domain information
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain Back     alignment and domain information
>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed Back     alignment and domain information
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein Back     alignment and domain information
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 502
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 100.0
PRK06753373 hypothetical protein; Provisional 100.0
PRK06617374 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 100.0
PRK08013400 oxidoreductase; Provisional 100.0
PRK07588391 hypothetical protein; Provisional 100.0
PRK06475400 salicylate hydroxylase; Provisional 100.0
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 100.0
TIGR01989437 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T 100.0
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 100.0
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 100.0
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 100.0
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 100.0
PRK07236386 hypothetical protein; Provisional 99.98
PRK06183538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 99.98
PRK07538413 hypothetical protein; Provisional 99.97
PRK05868372 hypothetical protein; Validated 99.97
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 99.97
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.97
PRK06996398 hypothetical protein; Provisional 99.97
PRK06185407 hypothetical protein; Provisional 99.97
PRK07045388 putative monooxygenase; Reviewed 99.97
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.97
PRK08163396 salicylate hydroxylase; Provisional 99.97
PRK06834488 hypothetical protein; Provisional 99.97
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.97
PRK06847375 hypothetical protein; Provisional 99.97
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.97
PRK09126392 hypothetical protein; Provisional 99.96
PRK08244493 hypothetical protein; Provisional 99.96
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 99.96
PRK08294634 phenol 2-monooxygenase; Provisional 99.96
PRK06184502 hypothetical protein; Provisional 99.96
PRK08243392 4-hydroxybenzoate 3-monooxygenase; Validated 99.96
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 99.96
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 99.96
PRK08132547 FAD-dependent oxidoreductase; Provisional 99.96
PF01494356 FAD_binding_3: FAD binding domain; InterPro: IPR00 99.96
KOG2614420 consensus Kynurenine 3-monooxygenase and related f 99.95
TIGR02360390 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. 99.95
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.95
PRK07190487 hypothetical protein; Provisional 99.95
PRK06126545 hypothetical protein; Provisional 99.95
PLN02985514 squalene monooxygenase 99.95
PTZ00367567 squalene epoxidase; Provisional 99.94
PRK08255 765 salicylyl-CoA 5-hydroxylase; Reviewed 99.88
KOG3855481 consensus Monooxygenase involved in coenzyme Q (ub 99.87
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 99.86
TIGR02023388 BchP-ChlP geranylgeranyl reductase. This model rep 99.84
PLN00093450 geranylgeranyl diphosphate reductase; Provisional 99.84
TIGR02028398 ChlP geranylgeranyl reductase. This model represen 99.82
PRK11445351 putative oxidoreductase; Provisional 99.81
PF08491276 SE: Squalene epoxidase; InterPro: IPR013698 This d 99.78
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 99.75
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.72
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 99.71
PRK10015429 oxidoreductase; Provisional 99.7
PRK10157428 putative oxidoreductase FixC; Provisional 99.7
TIGR01789370 lycopene_cycl lycopene cyclase. This model represe 99.62
PLN02697529 lycopene epsilon cyclase 99.54
KOG1298509 consensus Squalene monooxygenase [Lipid transport 99.51
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.47
PF04820454 Trp_halogenase: Tryptophan halogenase; InterPro: I 99.44
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.43
PLN02463447 lycopene beta cyclase 99.41
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.26
KOG1882293 consensus Transcriptional regulator SNIP1, contain 99.23
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.15
COG3456 430 Predicted component of the type VI protein secreti 99.14
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 99.12
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 98.82
KOG1880 337 consensus Nuclear inhibitor of phosphatase-1 [Gene 98.45
KOG0615 475 consensus Serine/threonine protein kinase Chk2 and 97.45
TIGR02500 410 type_III_yscD type III secretion apparatus protein 97.15
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 96.99
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 96.89
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 96.84
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 96.81
PRK12409410 D-amino acid dehydrogenase small subunit; Provisio 96.63
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 96.58
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 96.54
PRK12416463 protoporphyrinogen oxidase; Provisional 96.49
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 96.42
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 96.31
PRK11259376 solA N-methyltryptophan oxidase; Provisional 96.19
TIGR01373407 soxB sarcosine oxidase, beta subunit family, heter 95.65
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 95.59
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 95.55
PRK00711416 D-amino acid dehydrogenase small subunit; Validate 95.51
TIGR02730493 carot_isom carotene isomerase. Members of this fam 95.22
PRK11883451 protoporphyrinogen oxidase; Reviewed 95.09
PRK04176257 ribulose-1,5-biphosphate synthetase; Provisional 94.97
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 94.49
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 94.49
PRK11728393 hydroxyglutarate oxidase; Provisional 94.45
PF13738203 Pyr_redox_3: Pyridine nucleotide-disulphide oxidor 94.33
KOG2415621 consensus Electron transfer flavoprotein ubiquinon 94.09
PLN02612567 phytoene desaturase 93.98
TIGR00292254 thiazole biosynthesis enzyme. This enzyme is invol 93.96
PRK13369502 glycerol-3-phosphate dehydrogenase; Provisional 93.9
PRK07233434 hypothetical protein; Provisional 93.56
PRK05257494 malate:quinone oxidoreductase; Validated 92.42
PLN02568539 polyamine oxidase 92.4
COG2081408 Predicted flavoproteins [General function predicti 92.12
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 91.91
PRK12266508 glpD glycerol-3-phosphate dehydrogenase; Reviewed 91.53
COG0579429 Predicted dehydrogenase [General function predicti 91.51
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 91.49
PLN02976 1713 amine oxidase 91.3
PLN02676487 polyamine oxidase 89.7
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 89.66
PRK04965377 NADH:flavorubredoxin oxidoreductase; Provisional 89.35
TIGR00275400 flavoprotein, HI0933 family. The model when search 88.76
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 88.53
PRK13339497 malate:quinone oxidoreductase; Reviewed 88.2
PF01134392 GIDA: Glucose inhibited division protein A; InterP 88.14
PLN02576496 protoporphyrinogen oxidase 87.8
PF13454156 NAD_binding_9: FAD-NAD(P)-binding 87.38
PTZ00383497 malate:quinone oxidoreductase; Provisional 87.36
PRK05249461 soluble pyridine nucleotide transhydrogenase; Prov 86.99
PLN02464627 glycerol-3-phosphate dehydrogenase 86.9
PRK15317517 alkyl hydroperoxide reductase subunit F; Provision 86.86
TIGR01320483 mal_quin_oxido malate:quinone-oxidoreductase. This 86.63
PRK05192618 tRNA uridine 5-carboxymethylaminomethyl modificati 86.41
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 85.84
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 84.71
COG1231450 Monoamine oxidase [Amino acid transport and metabo 83.28
TIGR01292300 TRX_reduct thioredoxin-disulfide reductase. This m 82.95
PRK09897534 hypothetical protein; Provisional 82.94
PLN02268435 probable polyamine oxidase 82.66
PRK06116450 glutathione reductase; Validated 82.63
PRK09231582 fumarate reductase flavoprotein subunit; Validated 82.26
PRK09754396 phenylpropionate dioxygenase ferredoxin reductase 81.05
TIGR03140515 AhpF alkyl hydroperoxide reductase, F subunit. Thi 80.65
TIGR03329460 Phn_aa_oxid putative aminophosphonate oxidoreducta 80.39
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information 
Probab=100.00  E-value=3.2e-76  Score=617.57  Aligned_cols=497  Identities=74%  Similarity=1.271  Sum_probs=434.3

Q ss_pred             eEEeecCCCcccccCCCeEEEeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCch
Q 010723            4 RYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK   83 (502)
Q Consensus         4 w~~~f~~~~~~~~~~~p~~~~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~   83 (502)
                      |..+|+...+..+.+.|.++.|+|..|+++|.+.++...++++++|++++.++++|++++++|+++++|+||||||++|+
T Consensus       170 ~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~  249 (668)
T PLN02927        170 WYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK  249 (668)
T ss_pred             eEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence            55566655554556678899999999999999988776688999999999999999999999999999999999999999


Q ss_pred             hhccccCCCCCcccceEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHH
Q 010723           84 VRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLK  163 (502)
Q Consensus        84 vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  163 (502)
                      +|+.+++...+.|.++.+|+++++..+.+.....+..+.++..+++.++.+++.+.|+.+...+......++...+++++
T Consensus       250 vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~  329 (668)
T PLN02927        250 VRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFE  329 (668)
T ss_pred             HHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHH
Confidence            99999877778899999999887654443333445566788888888888888788877665543222334566788899


Q ss_pred             HhhCCChHHHHHHHcCCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCC
Q 010723          164 IFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSN  243 (502)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~  243 (502)
                      .|..|++.+.+++...+...+..+.++...+..+|.+|||+|+|||||+|+|+.|||+|+||+||..|+++|..+++...
T Consensus       330 ~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~  409 (668)
T PLN02927        330 IFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSV  409 (668)
T ss_pred             HhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhcccc
Confidence            99999999999888776555667788887777899999999999999999999999999999999999999988764321


Q ss_pred             CCCChhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCcccceeeeeccchhHHH
Q 010723          244 ESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLS  323 (502)
Q Consensus       244 ~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~  323 (502)
                      ..+.+.++..+|+.|+++|++++..++..+++...++..++...+.++.|+.+++.++++.+++...|+++..+||.|+.
T Consensus       410 ~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (668)
T PLN02927        410 ETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPLMLD  489 (668)
T ss_pred             ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeeeeeecccHHHhh
Confidence            12233467899999999999999999999999999988888777888899999999999999999999999999999999


Q ss_pred             hHhcCCCCCCCCCCCcccCCcccchhhhhhccCchhhhhccCCcEEEEecCCCCCcccceEEeecCCCCCEEEcCCCCCC
Q 010723          324 WVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHED  403 (502)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~  403 (502)
                      |....+.+.++|++..|.++||++..|..|+++++++|++++++|+|++.++++...+.++|. +.++.+++|||.++++
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~-~~~~~p~~iG~~~~~~  568 (668)
T PLN02927        490 WVLGGNSEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT-KDEDQPCIVGSEPDQD  568 (668)
T ss_pred             hhhcCCccccCCCCCccccccchhHHHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeee-cCCCCCeEecCCCCcC
Confidence            999999999999999999999999999999999999999999999999998888877889998 8889999999999999


Q ss_pred             CCCceeeeCCccccccceEEEEeCCeEEEEEcCCccceeecCCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEec
Q 010723          404 FSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIG  483 (502)
Q Consensus       404 ~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~  483 (502)
                      .+...|+|+++.||+.||+|.++++.|+|+||+|+||||||++.|++++++|+.+..|++||+|+||+.++..|++++..
T Consensus       569 ~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~~~  648 (668)
T PLN02927        569 FPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVIR  648 (668)
T ss_pred             CCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCCcceeEEEEeec
Confidence            88888899999999999999999999999999999999999999988899999999999999999999888899999999


Q ss_pred             cCCCCCcccccc--ccccccC
Q 010723          484 TPPNNNSERKEA--GEILQAV  502 (502)
Q Consensus       484 ~~~~~~~~~~~~--~~~~~~~  502 (502)
                      .+|... .++++  .+++|+|
T Consensus       649 ~~~~~~-~~~~~~~~~~~~~~  668 (668)
T PLN02927        649 KTPKST-RKNESNNDKLLQTA  668 (668)
T ss_pred             CCCcch-hhcccchhhhhhcC
Confidence            999887 55554  5888875

>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08013 oxidoreductase; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK06475 salicylate hydroxylase; Provisional Back     alignment and domain information
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>PRK07538 hypothetical protein; Provisional Back     alignment and domain information
>PRK05868 hypothetical protein; Validated Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK08163 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>PRK08294 phenol 2-monooxygenase; Provisional Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways Back     alignment and domain information
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] Back     alignment and domain information
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PRK06126 hypothetical protein; Provisional Back     alignment and domain information
>PLN02985 squalene monooxygenase Back     alignment and domain information
>PTZ00367 squalene epoxidase; Provisional Back     alignment and domain information
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>TIGR02023 BchP-ChlP geranylgeranyl reductase Back     alignment and domain information
>PLN00093 geranylgeranyl diphosphate reductase; Provisional Back     alignment and domain information
>TIGR02028 ChlP geranylgeranyl reductase Back     alignment and domain information
>PRK11445 putative oxidoreductase; Provisional Back     alignment and domain information
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>PRK10157 putative oxidoreductase FixC; Provisional Back     alignment and domain information
>TIGR01789 lycopene_cycl lycopene cyclase Back     alignment and domain information
>PLN02697 lycopene epsilon cyclase Back     alignment and domain information
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A Back     alignment and domain information
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>TIGR00292 thiazole biosynthesis enzyme Back     alignment and domain information
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>PRK05257 malate:quinone oxidoreductase; Validated Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional Back     alignment and domain information
>TIGR00275 flavoprotein, HI0933 family Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>PF13454 NAD_binding_9: FAD-NAD(P)-binding Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional Back     alignment and domain information
>PLN02464 glycerol-3-phosphate dehydrogenase Back     alignment and domain information
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional Back     alignment and domain information
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase Back     alignment and domain information
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase Back     alignment and domain information
>PRK09897 hypothetical protein; Provisional Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>PRK06116 glutathione reductase; Validated Back     alignment and domain information
>PRK09231 fumarate reductase flavoprotein subunit; Validated Back     alignment and domain information
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional Back     alignment and domain information
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
3rp8_A407 Crystal Structure Of Klebsiella Pneumoniae R204q Hp 3e-23
3rp6_A407 Crystal Structure Of Klebsiella Pneumoniae Hpxo Com 1e-22
3c96_A410 Crystal Structure Of The Flavin-Containing Monooxyg 4e-18
2rgj_A402 Crystal Structure Of Flavin-Containing Monooxygenas 6e-17
3alh_A379 Higher Resolution And Native Structure Of 2-Methyl- 3e-10
3gmc_A415 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 4e-10
3all_A379 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 7e-10
3alk_A379 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 8e-10
3gmb_A415 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 2e-08
4hb9_A412 Crystal Structure Of A Putative Fad Containing Mono 3e-08
3alm_A379 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 8e-06
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 118/244 (48%), Gaps = 13/244 (5%)
Query: 25  ISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 84
           +SR  LQ+ +    G + +     V   ++  D V+V   +G   +GDLLI ADG  S +
Sbjct: 124 VSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL 183
Query: 85  RKNLFG--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 142
           R  + G  PQ   Y+GY  + G+ +   A      +  F+G  +      V AG+  ++ 
Sbjct: 184 RPWVLGFTPQRR-YAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFF 242
Query: 143 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR 202
               PAG  +  +  +  L + F GW   V  LI A D +   R +I+D  P     RGR
Sbjct: 243 DVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGR 302
Query: 203 VTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERAR 262
           V LLGD+ H+  P++GQGGC A+ED    AV L    +++       DI +AL+ YE  R
Sbjct: 303 VALLGDAGHSTTPDIGQGGCAAMED----AVVLGAVFRQTR------DIAAALREYEAQR 352
Query: 263 RLRV 266
             RV
Sbjct: 353 CDRV 356
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407 Back     alignment and structure
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase Phzs From Pseudomonas Aeruginosa. Northeast Structural Genomics Consortium Target Par240 Length = 410 Back     alignment and structure
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs Length = 402 Back     alignment and structure
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of 2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase Length = 379 Back     alignment and structure
>pdb|3GMC|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase With Substrate Bound Length = 415 Back     alignment and structure
>pdb|3ALL|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270a Length = 379 Back     alignment and structure
>pdb|3ALK|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270f Length = 379 Back     alignment and structure
>pdb|3GMB|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase Length = 415 Back     alignment and structure
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412 Back     alignment and structure
>pdb|3ALM|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant C294a Length = 379 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query502
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 5e-98
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 5e-70
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 3e-66
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 1e-62
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 1e-58
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 4e-26
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 7e-14
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 1e-13
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 1e-12
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 8e-12
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-11
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 4e-10
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 4e-10
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 9e-10
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 1e-09
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 2e-09
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 2e-09
2xt9_B115 Putative signal transduction protein GARA; lyase-s 2e-09
2r0c_A549 REBC; flavin adenine dinucleotide, monooxygenase, 3e-09
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 5e-09
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 8e-09
3po8_A100 RV0020C protein, putative uncharacterized protein 1e-08
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 1e-08
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 1e-08
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 2e-08
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 2e-08
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 4e-08
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 6e-08
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 8e-07
2qa2_A499 CABE, polyketide oxygenase CABE; FAD, angucycline, 1e-06
2qa1_A500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 2e-06
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 3e-06
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 7e-06
3fmw_A570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 7e-06
3i3l_A591 Alkylhalidase CMLS; flavin-dependent halogenase, c 2e-05
3ihg_A535 RDME; flavoenzyme, anthracycline, polyketide biosy 2e-05
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 2e-05
3atr_A453 Conserved archaeal protein; saturating double bond 3e-05
2dkh_A639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 3e-05
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 3e-05
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
1pn0_A665 Phenol 2-monooxygenase; two dimers, TLS refinement 2e-04
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 Back     alignment and structure
 Score =  300 bits (771), Expect = 5e-98
 Identities = 79/268 (29%), Positives = 119/268 (44%), Gaps = 11/268 (4%)

Query: 11  FTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYA 70
             P  E+       +SR  LQ+ +    G + +     V   ++  D V+V   +G   +
Sbjct: 110 LAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSAS 169

Query: 71  GDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFV 129
           GDLLI ADG  S +R  + G   +  Y+GY  + G+ +   A      +  F+G  +   
Sbjct: 170 GDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVS 229

Query: 130 SSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDI 189
              V AG+  ++     PAG  +  +  +  L + F GW   V  LI A D +   R +I
Sbjct: 230 LMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEI 289

Query: 190 YDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPI 249
           +D  P     RGRV LLGD+ H+  P++GQGGC A+ED   L     +            
Sbjct: 290 HDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT----------R 339

Query: 250 DIVSALKSYERARRLRVAVIHGLARSAA 277
           DI +AL+ YE  R  RV  +   AR   
Sbjct: 340 DIAAALREYEAQRCDRVRDLVLKARKRC 367
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399 Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499 Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570 Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535 Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 100.0
4hb9_A412 Similarities with probable monooxygenase; flavin, 100.0
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 99.97
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 99.97
2qa2_A499 CABE, polyketide oxygenase CABE; FAD, angucycline, 99.97
3fmw_A570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 99.96
2qa1_A500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 99.96
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 99.96
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 99.96
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 99.95
1pn0_A665 Phenol 2-monooxygenase; two dimers, TLS refinement 99.95
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 99.95
2r0c_A549 REBC; flavin adenine dinucleotide, monooxygenase, 99.94
3ihg_A535 RDME; flavoenzyme, anthracycline, polyketide biosy 99.94
2dkh_A639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 99.93
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 99.93
3atr_A453 Conserved archaeal protein; saturating double bond 99.92
3e1t_A512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 99.91
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 99.91
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 99.9
3i3l_A591 Alkylhalidase CMLS; flavin-dependent halogenase, c 99.88
2gmh_A584 Electron transfer flavoprotein-ubiquinone oxidored 99.86
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 99.85
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.83
2pyx_A526 Tryptophan halogenase; structural genomics, JOI fo 99.83
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.83
2weu_A511 Tryptophan 5-halogenase; regioselectivity, antifun 99.82
2aqj_A538 Tryptophan halogenase, pRNA; flavin-dependent halo 99.8
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.8
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.79
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.79
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.78
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.78
3po8_A100 RV0020C protein, putative uncharacterized protein 99.78
2e4g_A550 Tryptophan halogenase; flavin-binding, rebeccamyci 99.78
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.78
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.76
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.76
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.76
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.76
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.75
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 99.75
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.75
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.75
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.75
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.75
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.74
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.73
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.73
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.72
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.71
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.7
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.67
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.64
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.56
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.56
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.53
2bry_A497 NEDD9 interacting protein with calponin homology a 99.37
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.34
4a0e_A123 YSCD, type III secretion protein; transport protei 99.32
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.25
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.14
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.09
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 98.96
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.93
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 98.93
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.85
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.58
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 98.11
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 97.87
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 97.72
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 97.58
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 97.54
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 97.41
3dme_A369 Conserved exported protein; structural genomics, P 97.3
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 97.3
2qcu_A501 Aerobic glycerol-3-phosphate dehydrogenase; glycer 97.2
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 97.06
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 97.05
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 96.9
2ywl_A180 Thioredoxin reductase related protein; uncharacter 96.29
3axb_A448 Putative oxidoreductase; dinucleotide-binding fold 96.14
2cul_A232 Glucose-inhibited division protein A-related PROT 96.12
3v76_A417 Flavoprotein; structural genomics, PSI-biology, NE 96.1
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 95.99
2i0z_A447 NAD(FAD)-utilizing dehydrogenases; structural geno 95.94
3nlc_A549 Uncharacterized protein VP0956; FAD-binding protei 95.53
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 95.42
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 95.38
2gv8_A447 Monooxygenase; FMO, FAD, NADPH, cofactor complex, 95.32
1rp0_A284 ARA6, thiazole biosynthetic enzyme; protein ligand 95.25
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 95.23
3c4n_A405 Uncharacterized protein DR_0571; alpha-beta protei 95.22
3ab1_A360 Ferredoxin--NADP reductase; oxidoreductase, electr 95.09
3da1_A561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 95.07
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 94.96
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 94.82
2zbw_A335 Thioredoxin reductase; redox protein, oxidoreducta 94.61
4a9w_A357 Monooxygenase; baeyer-villiger, FAD, oxidoreductas 94.41
3gwf_A540 Cyclohexanone monooxygenase; flavoprotein biocatal 94.26
2q0l_A311 TRXR, thioredoxin reductase; bacterial thiredoxin 94.11
2gqf_A401 Hypothetical protein HI0933; structural genomics, 94.11
1w4x_A542 Phenylacetone monooxygenase; baeyer-villiger, FAD; 94.02
3ces_A651 MNMG, tRNA uridine 5-carboxymethylaminomethyl modi 93.76
1qo8_A566 Flavocytochrome C3 fumarate reductase; oxidoreduct 93.42
3cp8_A641 TRNA uridine 5-carboxymethylaminomethyl modificati 93.37
3jsk_A344 Cypbp37 protein; octameric thiazole synthase, bios 93.21
2zxi_A637 TRNA uridine 5-carboxymethylaminomethyl modificat 92.66
2v3a_A384 Rubredoxin reductase; alkane degradation, NADH oxi 92.51
1vdc_A333 NTR, NADPH dependent thioredoxin reductase; hypoth 92.16
4ap3_A549 Steroid monooxygenase; oxidoreductase, baeyer-vill 92.14
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 91.63
1y0p_A571 Fumarate reductase flavoprotein subunit; flavocyto 91.62
2yqu_A455 2-oxoglutarate dehydrogenase E3 component; lipoami 91.56
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 91.06
1fl2_A310 Alkyl hydroperoxide reductase subunit F; reactive 91.04
2xve_A464 Flavin-containing monooxygenase; oxidoreductase; H 90.97
3uox_A545 Otemo; baeyer-villiger monooxygenase, oxidoreducta 90.59
3fbs_A297 Oxidoreductase; structural genomics, PSI2, MCSG, p 90.34
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 90.29
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 90.09
3lzw_A332 Ferredoxin--NADP reductase 2; ferredoxin reductase 90.01
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 89.83
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 89.72
1kf6_A602 Fumarate reductase flavoprotein; respiration, fuma 89.51
1ges_A450 Glutathione reductase; oxidoreductase(flavoenzyme) 88.93
1d4d_A572 Flavocytochrome C fumarate reductase; oxidoreducta 88.85
3cty_A319 Thioredoxin reductase; FAD, oxidoreductase, flavin 88.8
3o0h_A484 Glutathione reductase; ssgcid, structur genomics, 88.54
2r9z_A463 Glutathione amide reductase; NAD, FAD, substrate s 88.29
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 88.1
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 87.94
2eq6_A464 Pyruvate dehydrogenase complex, dihydrolipoamide d 87.85
2q7v_A325 Thioredoxin reductase; rossman fold, FAD, flavopro 87.81
2a87_A335 TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL 87.4
1c0p_A363 D-amino acid oxidase; alpha-beta-alpha motif, flav 87.17
1trb_A320 Thioredoxin reductase; oxidoreductase(flavoenzyme) 86.98
3d1c_A369 Flavin-containing putative monooxygenase; NP_37310 86.9
1m6i_A493 Programmed cell death protein 8; apoptosis, AIF, o 86.37
3s5w_A463 L-ornithine 5-monooxygenase; class B flavin depend 86.17
2rgh_A571 Alpha-glycerophosphate oxidase; flavoprotein oxida 85.94
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 85.84
1hyu_A521 AHPF, alkyl hydroperoxide reductase subunit F; thi 85.59
1xdi_A499 RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun 85.27
2gjc_A326 Thiazole biosynthetic enzyme, mitochondrial; gluta 85.17
3f8d_A323 Thioredoxin reductase (TRXB-3); redox protein, nuc 85.17
3iwa_A472 FAD-dependent pyridine nucleotide-disulphide oxido 85.1
3fg2_P404 Putative rubredoxin reductase; ferredoxin reductas 84.97
3itj_A338 Thioredoxin reductase 1; disulfide B flavoprotein, 83.96
3lxd_A415 FAD-dependent pyridine nucleotide-disulphide oxido 83.72
1mo9_A523 ORF3; nucleotide binding motifs, nucleotide bindin 82.61
2hqm_A479 GR, grase, glutathione reductase; glutathione redu 82.05
4gut_A776 Lysine-specific histone demethylase 1B; histone de 81.68
3ef6_A410 Toluene 1,2-dioxygenase system ferredoxin--NAD(+) 81.62
1fec_A490 Trypanothione reductase; redox-active center, oxid 81.41
2wpf_A495 Trypanothione reductase; oxidoreductase, trypanoso 81.26
1ojt_A482 Surface protein; redox-active center, glycolysis, 80.61
2qae_A468 Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin 80.48
1ebd_A455 E3BD, dihydrolipoamide dehydrogenase; redox-active 80.46
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
Probab=100.00  E-value=3.2e-33  Score=285.51  Aligned_cols=269  Identities=29%  Similarity=0.407  Sum_probs=215.6

Q ss_pred             CeEEEeeHHHHHHHHHhccCCCeEecCCeEEEEEeeCCeEEEEEccCcEEEeeEEEEecCCCchhhccccCC-CCCcccc
Q 010723           20 PVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGP-QEAIYSG   98 (502)
Q Consensus        20 p~~~~i~R~~L~~~L~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~-~~~~~~~   98 (502)
                      +.++.++|..|++.|.+.+..+.++++++|++++.++++++|++.+|++++||+||+|||.+|.||+.+.+. ....|.+
T Consensus       119 ~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~  198 (407)
T 3rp8_A          119 SRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAG  198 (407)
T ss_dssp             SCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSSHHHHHSSCCCCEEEE
T ss_pred             CceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHHHHHhcCCCCCCcccC
Confidence            457899999999999999876779999999999999999999999999999999999999999999999443 3566777


Q ss_pred             eEEEEEEecCCCCCccccceEEEecCceEEEEEeCCCCeEEEEEEEcCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHc
Q 010723           99 YTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILA  178 (502)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  178 (502)
                      ..++.+.+...........+..+++++.+++++|.+++...|++....+......+....+.+.+.+..|.+.+.+++..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  278 (407)
T 3rp8_A          199 YVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAA  278 (407)
T ss_dssp             EEEEEEEEECCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             cEEEEEEEecccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHc
Confidence            77777765432222334456677788888999999999988887766544333334466788899999999999888877


Q ss_pred             CCccceeeeecccCCCCCcccCCCEEEEcCCccccCCCchhhhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 010723          179 TDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSY  258 (502)
Q Consensus       179 ~~~~~~~~~~i~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y  258 (502)
                      ........+.++......+|+.+||+|||||||.++|++|||+|+||+||..|+++|...         . +...+|+.|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~---------~-~~~~~l~~Y  348 (407)
T 3rp8_A          279 LDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT---------R-DIAAALREY  348 (407)
T ss_dssp             SCGGGCEEEEEEECCCCSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC---------C-CHHHHHHHH
T ss_pred             CCccceeEEeeEecCCCCceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC---------C-CHHHHHHHH
Confidence            766554445555555558999999999999999999999999999999999999999853         1 568999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCC
Q 010723          259 ERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP  305 (502)
Q Consensus       259 ~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  305 (502)
                      +++|++++..++..++.+..+       +....+....+|+..|...
T Consensus       349 ~~~r~~~~~~~~~~s~~~~~~-------~~~~~~~~~~~R~~~l~~~  388 (407)
T 3rp8_A          349 EAQRCDRVRDLVLKARKRCDI-------THGKDMQLTEAWYQELREE  388 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HTTTTHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHhhhh-------hhcCCHHHHHHHHHHHhhc
Confidence            999999999998888775544       3334455677888777544
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Back     alignment and structure
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 Back     alignment and structure
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Back     alignment and structure
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Back     alignment and structure
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Back     alignment and structure
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Back     alignment and structure
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Back     alignment and structure
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Back     alignment and structure
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Back     alignment and structure
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A Back     alignment and structure
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Back     alignment and structure
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} Back     alignment and structure
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Back     alignment and structure
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* Back     alignment and structure
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Back     alignment and structure
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Back     alignment and structure
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Back     alignment and structure
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Back     alignment and structure
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Back     alignment and structure
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Back     alignment and structure
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Back     alignment and structure
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Back     alignment and structure
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Back     alignment and structure
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Back     alignment and structure
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Back     alignment and structure
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Back     alignment and structure
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Back     alignment and structure
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Back     alignment and structure
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Back     alignment and structure
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Back     alignment and structure
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Back     alignment and structure
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Back     alignment and structure
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* Back     alignment and structure
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Back     alignment and structure
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Back     alignment and structure
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Back     alignment and structure
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Back     alignment and structure
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Back     alignment and structure
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* Back     alignment and structure
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Back     alignment and structure
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Back     alignment and structure
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Back     alignment and structure
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Back     alignment and structure
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 502
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 1e-09
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 3e-09
d3c96a1288 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps 9e-08
d1pn0a1360 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So 3e-07
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 5e-07
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 5e-06
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 1e-05
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 1e-05
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 2e-05
d2voua1265 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr 4e-05
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 5e-05
d1wlna1107 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [T 9e-05
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 389 HENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEG 448
                  +G     +     I I  A +S  H RI    G + + DL S +GT +  N  
Sbjct: 30  KPGSTIRVGRIVRGN----EIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSN-- 83

Query: 449 RRYRVSSNFPARFRPSDTIEFGSDKKAIFRV 479
               +           D I+ G     +   
Sbjct: 84  ---ALDPETSVNLGDGDVIKLGEYTSILVNF 111
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 Back     information, alignment and structure
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query502
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.82
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.81
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.8
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.79
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.75
d3c96a1288 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 99.74
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.68
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.67
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.67
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.66
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.6
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.57
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.51
d1pn0a1360 Phenol hydroxylase {Soil-living yeast (Trichosporo 99.48
d1k0ia1292 p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a 99.35
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 99.23
d2gmha1380 Electron transfer flavoprotein-ubiquinone oxidored 97.46
d3c96a2111 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 97.09
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 97.02
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 96.49
d2voua2128 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 96.28
d1m6ia2137 Apoptosis-inducing factor (AIF) {Human (Homo sapie 96.24
d2gv8a1335 Flavin-dependent monoxygenase SPBP16F5.08c {Schizo 96.04
d1feca2117 Trypanothione reductase {Crithidia fasciculata [Ta 94.27
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 94.25
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 94.23
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 94.15
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 94.08
d2gqfa1253 Hypothetical protein HI0933 {Haemophilus influenza 93.42
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 93.16
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 93.0
d1ojta2125 Dihydrolipoamide dehydrogenase {Neisseria meningit 91.68
d1w4xa1298 Phenylacetone monooxygenase {Thermobifida fusca [T 90.69
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 90.22
d1q1ra2133 Putidaredoxin reductase {Pseudomonas putida [TaxId 90.13
d1d7ya2121 NADH-dependent ferredoxin reductase, BphA4 {Pseudo 89.07
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 88.28
d1nhpa2123 NADH peroxidase {Enterococcus faecalis [TaxId: 135 87.86
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 87.51
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 87.34
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 86.71
d1m6ia1213 Apoptosis-inducing factor (AIF) {Human (Homo sapie 85.08
d1dxla2123 Dihydrolipoamide dehydrogenase {Garden pea (Pisum 83.65
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 81.61
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=2.4e-20  Score=147.10  Aligned_cols=92  Identities=26%  Similarity=0.325  Sum_probs=79.6

Q ss_pred             cEEEEecCCCCCcccceEEeecCCCCCEEEcCCCCCCCCCceeeeCCccccccceEEEEeCCeEEEEEcCCccceeecCC
Q 010723          367 EWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDN  446 (502)
Q Consensus       367 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~d~~s~nGt~vn~~  446 (502)
                      -++|.....+    +.++|.    +..++|||.++|+     |+++++.|||.||.|.++++.|+|+|++|+|||||||.
T Consensus         6 ~~~l~~~~~G----~~~~l~----~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~i~~~~~~~~i~Dl~S~nGt~vNg~   72 (99)
T d2ff4a3           6 VAYLHDIASG----RGYPLQ----AAATRIGRLHDND-----IVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHE   72 (99)
T ss_dssp             CCEEEETTTC----CEEECC----SSEEEEESSTTSS-----EECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTE
T ss_pred             EEEEEcCCCC----CEEEEC----CCCEEEeeCcCCC-----EEECCccccceeEEEEEeCCEEEEEECCCcCCCeECCE
Confidence            3456655544    889999    5669999999888     99999999999999999999999999999999999999


Q ss_pred             CCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 010723          447 EGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV  481 (502)
Q Consensus       447 ~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~  481 (502)
                           ++.  ++..|++||+|+||+.   .|+|++
T Consensus        73 -----~i~--~~~~L~~Gd~i~iG~~---~~~f~~   97 (99)
T d2ff4a3          73 -----RIR--SAVTLNDGDHIRICDH---EFTFQI   97 (99)
T ss_dssp             -----ECS--SEEEECTTCEEEETTE---EEEEEC
T ss_pred             -----EcC--CceECCCCCEEEECCE---EEEEEE
Confidence                 885  4678999999999998   666654
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Back     information, alignment and structure
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure