Citrus Sinensis ID: 010739

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--
Protein Sequence
MASVPELGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLKSVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIKML
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHccEEccccccccccccccHHccccccccccEEEEEEccccccEEEEEccccEEEEEEEEEEEEccEEccccHHHHcccHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHEEEEEEcc
Coil and Loop (DISEMBL)
masvpelgfalspnfLLQRHkllvpqlhgscltrpppristriknyqnpsfiaTKVSKIREFRFLKSVeldqfvtsddedEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDmdcvglkpgfSMIEKVISLYWEMEKKERAVLFVKAVLSRGIayaegdgegqqggptgYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVragsiaeldgknLGLIEKYQSDLladgsrlsswaiqeggsslyGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLdlglypeyMDRVAVLQGLRKRIQQSGNVEAYLNLCKRlsdtsligpcLVYLYIKKYKLWIIKML
Flexible Loop (DISEMBL)
MASVPELGFALSPNFLLQRHKLLVPQLHGSCLTRPPPristriknyqnpsfIATKVSKIREFRFLKSVELDqfvtsddedemSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKkenrvdneTMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAyaegdgegqqggPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRagsiaeldgknlgLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRlsdtsligpcLVYLYIKKYKLWIIKML
Low Complexity Region (SEG)
MASVPELGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLKSVELDQFVTSddedemseeffeaieeleRMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERgvgdvvdllvdmdcvglKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAegdgegqqggPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVylyikkyklwiikml
Disordered region (IsUnstruct)
******LGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLKSVELDQFV**************************************ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIK**
Disordered Region (DISOPRED)
****************LQRHKLLVPQLHGSCLTRPP***********************************************EEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIKML
Disordered Region (DISEMBL)
MASVPELGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLKSVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIKML
Disordered Region (DISPRO)
**SVPELGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLKSVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIKML
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASVPELGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLKSVELDQFVTSDDxxxxxxxxxxxxxxxxxxxxxPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIKML
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	502	2.2.26 [Sep-21-2011]
Q0WNN7	503	Pentatricopeptide repeat-	yes	no	0.940	0.938	0.636	1e-170
Q0WVV0	664	Pentatricopeptide repeat-	no	no	0.350	0.265	0.25	4e-05
Q9LW84	642	Pentatricopeptide repeat-	no	no	0.262	0.205	0.275	0.0007

>sp|Q0WNN7|PP176_ARATH Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana GN=At2g30100 PE=2 SV=2

 Score =  598 bits (1543), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 313/492 (63%), Positives = 380/492 (77%), Gaps = 20/492 (4%)

Query: 23  LVPQLHGSCLTRPPPRISTRIK-NYQNPSFIATKVSKIREFRFLKSVELDQFVTSDDEDE 81
            +P+LH +   +P  RI   +K NY           K RE    +SVELDQF+TS++E+ 
Sbjct: 20  FLPRLHRNHSVKPNSRIICNLKLNYS--------AGKFREMGLSRSVELDQFITSEEEEG 71

Query: 82  MSEE----FFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVF 137
            +EE    FFEAIEELERMTREPSDILEEMN RLS+RELQL+LVYF+QEGRDSWC LEVF
Sbjct: 72  EAEEIGEGFFEAIEELERMTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCTLEVF 131

Query: 138 EWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKV 197
           EWLKKENRVD E MELMVSIMC WVKK IE+E     V DLL++MDCVGLKPGFSM++KV
Sbjct: 132 EWLKKENRVDEEIMELMVSIMCGWVKKLIEDECNAHQVFDLLIEMDCVGLKPGFSMMDKV 191

Query: 198 ISLYWEMEKKERAVLFVKAVLSR-----GIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD 252
           I+LY EM KKE AVLFVK VL R           G  EG++GGP GYLAWK MV+G Y  
Sbjct: 192 IALYCEMGKKESAVLFVKEVLRRRDGFGYSVVGGGGSEGRKGGPVGYLAWKFMVDGDYRK 251

Query: 253 AIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGL 312
           A+ +V+ LR SGLKPE YSYLIA+TA+VKELN  GK LR+LK + RAG +AE+D  +  L
Sbjct: 252 AVDMVMELRLSGLKPEAYSYLIAMTAIVKELNSLGKTLRELKRFARAGFVAEIDDHDRVL 311

Query: 313 IEKYQSDLLADGSRLSSWAIQEG--GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV 370
           IEKYQS+ L+ G +L++WA++EG    S+ GVVHERLLAMYICAGRG EAE+QLW+MKL 
Sbjct: 312 IEKYQSETLSRGLQLATWAVEEGQENDSIIGVVHERLLAMYICAGRGPEAEKQLWKMKLA 371

Query: 371 GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDA 430
           G+E + DL+DIV+AICASQ E +AVSRLL+R+E M S  KKKTLSWLLRGY+KGGH  +A
Sbjct: 372 GREPEADLHDIVMAICASQKEVNAVSRLLTRVEFMGSQRKKKTLSWLLRGYVKGGHFEEA 431

Query: 431 AETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLY 490
           AETL  M+D GL+PEY+DRVAV+QG+ ++IQ+  +VEAY++LCKRL D  L+GPCLVY+Y
Sbjct: 432 AETLVSMIDSGLHPEYIDRVAVMQGMTRKIQRPRDVEAYMSLCKRLFDAGLVGPCLVYMY 491

Query: 491 IKKYKLWIIKML 502
           I KYKLWI+KM+
Sbjct: 492 IDKYKLWIVKMM 503

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVV0|PPR31_ARATH Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 36/212 (16%)

Query: 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD 306
            GK    IKL   ++  GLKP+V +Y   L   +K  N + KA+             EL 
Sbjct: 179 NGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAI-------------ELI 225

Query: 307 GKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE 366
           G           +L  +G ++ S         +YG V    LA+    GR  EAE  + +
Sbjct: 226 G-----------ELPHNGIQMDSV--------MYGTV----LAICASNGRSEEAENFIQQ 262

Query: 367 MKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH 426
           MK+ G   +   Y  +L   + + +      L++ ++ +  +  K  ++ LL+ YIKGG 
Sbjct: 263 MKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGL 322

Query: 427 INDAAETLTKMLDLGLYPEYMDRVAVLQGLRK 458
            + + E L+++   G     M    ++ GL K
Sbjct: 323 FDRSRELLSELESAGYAENEMPYCMLMDGLSK 354

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 6/138 (4%)

Query: 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE--LNEFGKALRKLKGYVRAGSIAEL 305
           GK  +A+ L   ++  G  P+VY+Y   ++ +VK   +NE    LRK++     G  A++
Sbjct: 493 GKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME---ENGCRADI 549

Query: 306 DGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLW 365
           +  N+ ++  +    +   +      I+  G    GV +  LL  +  AG   EA R + 
Sbjct: 550 NSHNI-ILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMR 608

Query: 366 EMKLVGKEADGDLYDIVL 383
           EMK  G E D   Y  +L
Sbjct: 609 EMKDKGFEYDAITYSSIL 626

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	502
225434512	511	PREDICTED: pentatricopeptide repeat-cont	0.998	0.980	0.782	0.0
255560355	499	conserved hypothetical protein [Ricinus	0.976	0.981	0.763	0.0
224105911	500	predicted protein [Populus trichocarpa]	0.966	0.97	0.777	0.0
356566020	508	PREDICTED: pentatricopeptide repeat-cont	0.996	0.984	0.716	0.0
356539658	510	PREDICTED: pentatricopeptide repeat-cont	0.992	0.976	0.708	0.0
449523569	501	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.970	0.972	0.695	0.0
449450940	1290	PREDICTED: uncharacterized protein LOC10	0.948	0.368	0.688	0.0
334184571	503	pentatricopeptide repeat-containing prot	0.940	0.938	0.636	1e-168
297745858	411	unnamed protein product [Vitis vinifera]	0.703	0.858	0.750	1e-158
3150410	902	putative unknown protein, leucine-rich r	0.898	0.5	0.630	1e-157

>gi|225434512|ref|XP_002278434.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Vitis vinifera]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/502 (78%), Positives = 435/502 (86%), Gaps = 1/502 (0%)

Query: 1   MASVPELGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIR 60
           + S  ELGF LS +F +QR +L+VP+   S L     R +T I N+QNP F+  K  KIR
Sbjct: 11  LMSPTELGFTLSSSFSIQRPRLIVPKFSRSFLGEYCSRATT-ICNHQNPRFVVPKRDKIR 69

Query: 61  EFRFLKSVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVL 120
           EFR  KSVELDQF+TSDDEDEMSE FFEAIEELERMTREPSD+LEEMNDRLSARELQLVL
Sbjct: 70  EFRLFKSVELDQFLTSDDEDEMSEGFFEAIEELERMTREPSDVLEEMNDRLSARELQLVL 129

Query: 121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLV 180
           VYFSQEGRDSWCALEVFEWL+KENRVD ETMELMVSIMCSWVKK IE E  VGDVVDLLV
Sbjct: 130 VYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEHDVGDVVDLLV 189

Query: 181 DMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYL 240
           DMDCVGLKPGFSMIEKVISLYWEME+KE+AVLFVK VL R IAY+E DG+G +GGPTGYL
Sbjct: 190 DMDCVGLKPGFSMIEKVISLYWEMEEKEKAVLFVKEVLRREIAYSEDDGDGHKGGPTGYL 249

Query: 241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAG 300
           AWKMM EG Y  A+KLVIHLRESGLKPEVYSYLIA+TAVVKELNEF KALRKLKG+ ++G
Sbjct: 250 AWKMMAEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGFTKSG 309

Query: 301 SIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEA 360
            IAELD +N+ LIEKYQSDLLADG RLSSW IQEG S L+GVV+ERLLAMYICAGRGLEA
Sbjct: 310 LIAELDAENVELIEKYQSDLLADGVRLSSWVIQEGRSPLHGVVYERLLAMYICAGRGLEA 369

Query: 361 ERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRG 420
           ERQLWEMKLVGKEAD +LYDIVLAICAS+ E SA+SRLL+ +EV +S+ +KKTLSWLLRG
Sbjct: 370 ERQLWEMKLVGKEADRELYDIVLAICASKKEASAISRLLTGMEVTSSIRRKKTLSWLLRG 429

Query: 421 YIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS 480
           YIKG H +DA+ET+ KMLDLGL PEY+DR AVLQGLR RIQQ+GNVE YL LCK LSD +
Sbjct: 430 YIKGSHFDDASETIIKMLDLGLCPEYLDRAAVLQGLRNRIQQTGNVETYLKLCKHLSDAN 489

Query: 481 LIGPCLVYLYIKKYKLWIIKML 502
           LIGPCLVYLYIKKYKLWI+K +
Sbjct: 490 LIGPCLVYLYIKKYKLWILKTI 511

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560355|ref|XP_002521193.1| conserved hypothetical protein [Ricinus communis] gi|223539607|gb|EEF41193.1| conserved hypothetical protein [Ricinus communis]

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/503 (76%), Positives = 431/503 (85%), Gaps = 13/503 (2%)

Query: 3   SVPELGFALSPNFLLQR-HKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIR- 60
           SV  L  ++S  FLLQR +KLL P+           ++S+ IK  ++ +F+  + SK R 
Sbjct: 7   SVASLTKSVSSTFLLQRRYKLLNPRFF---------QLSS-IKFPKSSNFVVAQQSKSRN 56

Query: 61  -EFRFLKSVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLV 119
            EFR LKSVELDQ++ SDDE+EMSE FFEAIEELERMTREPSD+LEEMND+LSARELQLV
Sbjct: 57  REFRVLKSVELDQYIASDDEEEMSEGFFEAIEELERMTREPSDVLEEMNDKLSARELQLV 116

Query: 120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLL 179
           LVYFSQEGRDSWCALEVFEWL+KENRVD ETMELMVSIMCSW+KK IE E  +GDVVDLL
Sbjct: 117 LVYFSQEGRDSWCALEVFEWLRKENRVDKETMELMVSIMCSWIKKLIEGEHEIGDVVDLL 176

Query: 180 VDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGY 239
           VDMDCVGLKP FSMIEKVISLYWE+ +KE++V FVK VL R +AY E DGEGQ+GGPTGY
Sbjct: 177 VDMDCVGLKPSFSMIEKVISLYWEIGEKEKSVSFVKEVLRREVAYFEDDGEGQKGGPTGY 236

Query: 240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRA 299
           LAWKMMV+G Y DA+KLVIH RESGLKPEVYSYLIA+TAVVKELNEF KALRKLKG+ ++
Sbjct: 237 LAWKMMVDGNYRDAVKLVIHFRESGLKPEVYSYLIAMTAVVKELNEFAKALRKLKGFAKS 296

Query: 300 GSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLE 359
           G IAELD +N  LIEKYQSDL+ADG  LSSW IQEG  SLYGVVHERLLAMYICAGRGL+
Sbjct: 297 GLIAELDAENTRLIEKYQSDLIADGVCLSSWVIQEGSPSLYGVVHERLLAMYICAGRGLD 356

Query: 360 AERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR 419
           AERQLWEMKLVGK ADGDLYDIVLAICASQ E SAVSRLL+R+EV +SL KKKTLSWLLR
Sbjct: 357 AERQLWEMKLVGKHADGDLYDIVLAICASQKEASAVSRLLTRVEVTSSLQKKKTLSWLLR 416

Query: 420 GYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479
           GY+KGG  ++AAE L KMLD+GL P+Y+DRVAVLQGLRKRIQQ GNVE+YLNLCKRLSD 
Sbjct: 417 GYLKGGQYDEAAEALVKMLDMGLCPDYLDRVAVLQGLRKRIQQWGNVESYLNLCKRLSDE 476

Query: 480 SLIGPCLVYLYIKKYKLWIIKML 502
           +LIGP LVYLYIKKYKLWI+KML
Sbjct: 477 NLIGPSLVYLYIKKYKLWIMKML 499

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105911|ref|XP_002313976.1| predicted protein [Populus trichocarpa] gi|222850384|gb|EEE87931.1| predicted protein [Populus trichocarpa]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/495 (77%), Positives = 429/495 (86%), Gaps = 10/495 (2%)

Query: 11  LSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNP---SFIATKVSKIREFRFLKS 67
           +SP F L++      +   SC+ +P   +ST I NYQ P   +F+  K +K+REFR  KS
Sbjct: 13  VSPVFSLKK------RYWNSCM-KPCCMVSTIICNYQTPKRPNFVVAKTTKVREFRLFKS 65

Query: 68  VELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEG 127
           VELDQ+VTSDDE+EM E FFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEG
Sbjct: 66  VELDQYVTSDDEEEMGEGFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEG 125

Query: 128 RDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL 187
           RDSWCALEVFEWL+KENRVD ETMELMVSIMCSWVKK IE E+ VGDVVDLLVDMDCVGL
Sbjct: 126 RDSWCALEVFEWLRKENRVDKETMELMVSIMCSWVKKLIEGEQDVGDVVDLLVDMDCVGL 185

Query: 188 KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE 247
           KP FSMIEKVISLYW+M KKE AV FVK VL RGIAY+  DGEGQ+GGPTGYL WKMMV+
Sbjct: 186 KPSFSMIEKVISLYWDMGKKEGAVSFVKEVLRRGIAYSGDDGEGQKGGPTGYLTWKMMVD 245

Query: 248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDG 307
           G Y +A+KLVIHLRESGLKPE+Y+YLIA+TAVVKELNEF KALRKLKGY R+G + ELD 
Sbjct: 246 GNYRNAVKLVIHLRESGLKPEIYAYLIAMTAVVKELNEFSKALRKLKGYSRSGMVTELDA 305

Query: 308 KNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEM 367
           +N+ L+EKYQSDLLADG  LSSW IQEG  +LYGVVHERLLAMYICAGRGL+AERQLWEM
Sbjct: 306 ENVELVEKYQSDLLADGVCLSSWVIQEGSPALYGVVHERLLAMYICAGRGLDAERQLWEM 365

Query: 368 KLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI 427
           KLVGKEADGDLYDIVLAICASQ E SAV+RLL+RIEV +S+ KKK+LSWLLRGYIKGGH 
Sbjct: 366 KLVGKEADGDLYDIVLAICASQKEASAVARLLTRIEVASSMRKKKSLSWLLRGYIKGGHY 425

Query: 428 NDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLV 487
            +AAETL KMLDLGL P+Y+DRVAV+QGLRKRIQQ GNVE+YL LCKRLSD +LIGP LV
Sbjct: 426 GEAAETLIKMLDLGLSPDYLDRVAVMQGLRKRIQQWGNVESYLKLCKRLSDVNLIGPSLV 485

Query: 488 YLYIKKYKLWIIKML 502
           YLYIKKYKLWI+K+L
Sbjct: 486 YLYIKKYKLWIMKLL 500

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566020|ref|XP_003551233.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like [Glycine max]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/504 (71%), Positives = 423/504 (83%), Gaps = 4/504 (0%)

Query: 1   MASVPELGFALSPNFLLQR--HKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSK 58
           +A + +LGF  S     QR  H L+ P  H     +    +S R   ++NPSF++ K   
Sbjct: 7   LAPIFKLGFVFSSVSPSQRKRHPLMFPASHCGFSLKFYGGLSARSCKFKNPSFVSAKHGS 66

Query: 59  IREFRFLKSVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQL 118
           +R FR LKSVE+DQ+VTS+DE  MS+ FFEAIEELERMTREPSD+LEEMNDRLSARELQL
Sbjct: 67  LRGFRALKSVEMDQYVTSNDE--MSDGFFEAIEELERMTREPSDVLEEMNDRLSARELQL 124

Query: 119 VLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDL 178
           VLVYFSQ+GRDSWCALEVF+WL+KENRVD ETMELMV+IMC WVKK I+++ GVGDVVDL
Sbjct: 125 VLVYFSQDGRDSWCALEVFDWLRKENRVDKETMELMVAIMCGWVKKLIQQQHGVGDVVDL 184

Query: 179 LVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTG 238
           LVDMDCVGL+PGFSMIEKVISLYWEM +KE AVLFV+ VL RGI Y E D EG +GGPTG
Sbjct: 185 LVDMDCVGLRPGFSMIEKVISLYWEMGEKEGAVLFVEEVLRRGIPYVEEDEEGHKGGPTG 244

Query: 239 YLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR 298
           YLAWKMM EG Y +A++LVI  RESGLKPE+YSYL+A+TAVVKELNEF KALRKLKG+ R
Sbjct: 245 YLAWKMMAEGDYRNAVRLVIRFRESGLKPEIYSYLVAMTAVVKELNEFAKALRKLKGFTR 304

Query: 299 AGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGL 358
           AG +AELD +++ L EKYQSD LADG RLS+W IQ+G  SL+G+VHERLLAMYICAG G+
Sbjct: 305 AGLVAELDLEDVELTEKYQSDTLADGVRLSNWVIQDGSPSLHGIVHERLLAMYICAGHGI 364

Query: 359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL 418
           EAERQLWEMKLVGKEADGDLYDIVLAICASQ E +A +RLL+R+EV++S  KKK+LSWLL
Sbjct: 365 EAERQLWEMKLVGKEADGDLYDIVLAICASQKESNATARLLTRLEVVSSPQKKKSLSWLL 424

Query: 419 RGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD 478
           RGYIKGGH N+AAET+ KML+LG YPEY+DR AVLQGLRKRIQQ GN++ Y+ LCK LSD
Sbjct: 425 RGYIKGGHFNEAAETIMKMLELGFYPEYLDRAAVLQGLRKRIQQYGNLDTYVRLCKSLSD 484

Query: 479 TSLIGPCLVYLYIKKYKLWIIKML 502
            +LIGPCLV+LYI+KYKLW++KML
Sbjct: 485 ANLIGPCLVHLYIRKYKLWVVKML 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539658|ref|XP_003538312.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like [Glycine max]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/508 (70%), Positives = 417/508 (82%), Gaps = 10/508 (1%)

Query: 1   MASVPELGF---ALSPNFLLQRHKLLVPQLH-GSCLTRPPPRISTRIKNYQNPSFIATKV 56
            A + +LGF   ++SP+   +RH L+ P  H G  L      +S R   ++NPSF+  K 
Sbjct: 7   FAPIFKLGFVFSSVSPS--QKRHPLVFPASHCGYSLKFYDGVLSARSCKFKNPSFV--KQ 62

Query: 57  SKIREFRFLKSVELDQFVTSDDE-DEMSEEFFEAIEELERMTREPSDILEEMNDRLSARE 115
             IR FR LKSVELDQ+VTSDDE DEMS+ FFEAIEELERMTREPSD+LEEMNDRLSARE
Sbjct: 63  GSIRGFRALKSVELDQYVTSDDEEDEMSDGFFEAIEELERMTREPSDVLEEMNDRLSARE 122

Query: 116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDV 175
           LQLVLVYFSQ+GRDSWCALEVF+WL+KENRVD ETMELMV+IMC WVKK I+E  GV   
Sbjct: 123 LQLVLVYFSQDGRDSWCALEVFDWLRKENRVDKETMELMVAIMCGWVKKLIQEHHGVVGD 182

Query: 176 VDLLVD-MDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQG 234
           V  L+  MDCVGL+PGFSMIEKVISLYWEM +KE AVLFV+ VL RGI Y E D EG +G
Sbjct: 183 VVDLLVDMDCVGLRPGFSMIEKVISLYWEMGEKEGAVLFVEEVLRRGIPYLEEDEEGHKG 242

Query: 235 GPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLK 294
           GPTGYLAWKMM EG Y  A++LVIH  ESGLKPEVYSYL+A+TAVVKELNE  KALRKLK
Sbjct: 243 GPTGYLAWKMMAEGDYTSAVRLVIHFTESGLKPEVYSYLVAMTAVVKELNELAKALRKLK 302

Query: 295 GYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA 354
            + R G +AELD +++ L EKYQSDLL DG RLS+WAIQ+G  SL+G++HERLLAMYICA
Sbjct: 303 SFARTGLVAELDLEDVELTEKYQSDLLGDGVRLSNWAIQDGSPSLHGIIHERLLAMYICA 362

Query: 355 GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL 414
           G G+EAE+QLWEMKLVGKEADGDLYDIVLAICASQ E +A +RLL+R+EV +S  KKK+L
Sbjct: 363 GHGIEAEKQLWEMKLVGKEADGDLYDIVLAICASQKESNATARLLTRLEVASSPQKKKSL 422

Query: 415 SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCK 474
           SWLLRGYIKGGH N+AAET+ KMLDLG YPEY+DR AVLQGLRKRIQQ GN++ Y+ LCK
Sbjct: 423 SWLLRGYIKGGHFNEAAETIMKMLDLGFYPEYLDRAAVLQGLRKRIQQYGNLDTYVRLCK 482

Query: 475 RLSDTSLIGPCLVYLYIKKYKLWIIKML 502
            LSD +LIGPCLV+LYI+KYKLW++KML
Sbjct: 483 SLSDANLIGPCLVHLYIRKYKLWVVKML 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523569|ref|XP_004168796.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like [Cucumis sativus]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/496 (69%), Positives = 406/496 (81%), Gaps = 9/496 (1%)

Query: 7   LGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLK 66
             F+LS     QR     P+L+          +S    NYQ+ +F  ++ +K R+ R  K
Sbjct: 15  FSFSLSSPLESQRCGFSTPRLY---------MVSPISCNYQDSTFSVSRAAKFRDLRLFK 65

Query: 67  SVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQE 126
           SVELDQF+TSDDEDEM + FFEAIEELERMTREPSD+LEEMNDRLSARE+QLVLVYFSQE
Sbjct: 66  SVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLVYFSQE 125

Query: 127 GRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG 186
           GRDSWCALEVFEWL+KENRVD ETMELMVSIMCSW+KK +E    VGDVVDLLVDMDCVG
Sbjct: 126 GRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVDMDCVG 185

Query: 187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV 246
           LKP FSMIEKVISLYWEM +KE+AV FVK VL R +A+ + D EG +GGP+GYLAWKMMV
Sbjct: 186 LKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLAWKMMV 245

Query: 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD 306
           +G Y  A+K+V+HLRESGL+PEVYSYLIA+TAVVKELNEF KALRKLKGY R G +AELD
Sbjct: 246 DGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGFVAELD 305

Query: 307 GKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE 366
             N+ L+ KYQ++LLADG +LS+W ++EG SS+ GVVHERLLAMYICAG+G+EAERQLWE
Sbjct: 306 KNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAERQLWE 365

Query: 367 MKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH 426
           MKLVGKEAD DLYDIVLAICASQ E  A+ RLL+RIE+ + + KKK+L+WLLRGYIKGGH
Sbjct: 366 MKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGYIKGGH 425

Query: 427 INDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCL 486
             DAA TL KM++LG  PEY+DRVAVLQGL K I++  +V  YL+LCK LSD +LIGP L
Sbjct: 426 FRDAAGTLVKMINLGFLPEYLDRVAVLQGLXKEIREPESVHTYLDLCKCLSDANLIGPSL 485

Query: 487 VYLYIKKYKLWIIKML 502
           VYL+++K+KLWIIKML
Sbjct: 486 VYLHLQKHKLWIIKML 501

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450940|ref|XP_004143220.1| PREDICTED: uncharacterized protein LOC101207176 [Cucumis sativus]

 Score =  692 bits (1785), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/485 (68%), Positives = 392/485 (80%), Gaps = 9/485 (1%)

Query: 7   LGFALSPNFLLQRHKLLVPQLHGSCLTRPPPRISTRIKNYQNPSFIATKVSKIREFRFLK 66
             F+LS     QR     P+L+          +S    NYQ+ +F  ++ +K R+ R  K
Sbjct: 15  FSFSLSSPLESQRCGFSTPRLY---------MVSPISCNYQDSTFSVSRAAKFRDLRLFK 65

Query: 67  SVELDQFVTSDDEDEMSEEFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQE 126
           SVELDQF+TSDDEDEM + FFEAIEELERMTREPSD+LEEMNDRLSARE+QLVLVYFSQE
Sbjct: 66  SVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLSAREIQLVLVYFSQE 125

Query: 127 GRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG 186
           GRDSWCALEVFEWL+KENRVD ETMELMVSIMCSW+KK +E    VGDVVDLLVDMDCVG
Sbjct: 126 GRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNVGDVVDLLVDMDCVG 185

Query: 187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV 246
           LKP FSMIEKVISLYWEM +KE+AV FVK VL R +A+ + D EG +GGP+GYLAWKMMV
Sbjct: 186 LKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGHKGGPSGYLAWKMMV 245

Query: 247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD 306
           +G Y  A+K+V+HLRESGL+PEVYSYLIA+TAVVKELNEF KALRKLKGY R G +AELD
Sbjct: 246 DGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRKLKGYARDGFVAELD 305

Query: 307 GKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE 366
             N+ L+ KYQ++LLADG +LS+W ++EG SS+ GVVHERLLAMYICAG+G+EAERQLWE
Sbjct: 306 KNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYICAGQGVEAERQLWE 365

Query: 367 MKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH 426
           MKLVGKEAD DLYDIVLAICASQ E  A+ RLL+RIE+ + + KKK+L+WLLRGYIKGGH
Sbjct: 366 MKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKKSLTWLLRGYIKGGH 425

Query: 427 INDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCL 486
             DAA TL KM++LG  PEY+DRVAVLQGLRK I++  +V  YL+LCK LSD +LIGP L
Sbjct: 426 FRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDLCKCLSDANLIGPSL 485

Query: 487 VYLYI 491
               +
Sbjct: 486 TRFLV 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184571|ref|NP_180571.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546771|sp|Q0WNN7.2|PP176_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g30100, chloroplastic; Flags: Precursor gi|330253250|gb|AEC08344.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 313/492 (63%), Positives = 380/492 (77%), Gaps = 20/492 (4%)

Query: 23  LVPQLHGSCLTRPPPRISTRIK-NYQNPSFIATKVSKIREFRFLKSVELDQFVTSDDEDE 81
            +P+LH +   +P  RI   +K NY           K RE    +SVELDQF+TS++E+ 
Sbjct: 20  FLPRLHRNHSVKPNSRIICNLKLNYS--------AGKFREMGLSRSVELDQFITSEEEEG 71

Query: 82  MSEE----FFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVF 137
            +EE    FFEAIEELERMTREPSDILEEMN RLS+RELQL+LVYF+QEGRDSWC LEVF
Sbjct: 72  EAEEIGEGFFEAIEELERMTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCTLEVF 131

Query: 138 EWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKV 197
           EWLKKENRVD E MELMVSIMC WVKK IE+E     V DLL++MDCVGLKPGFSM++KV
Sbjct: 132 EWLKKENRVDEEIMELMVSIMCGWVKKLIEDECNAHQVFDLLIEMDCVGLKPGFSMMDKV 191

Query: 198 ISLYWEMEKKERAVLFVKAVLSR-----GIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD 252
           I+LY EM KKE AVLFVK VL R           G  EG++GGP GYLAWK MV+G Y  
Sbjct: 192 IALYCEMGKKESAVLFVKEVLRRRDGFGYSVVGGGGSEGRKGGPVGYLAWKFMVDGDYRK 251

Query: 253 AIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGL 312
           A+ +V+ LR SGLKPE YSYLIA+TA+VKELN  GK LR+LK + RAG +AE+D  +  L
Sbjct: 252 AVDMVMELRLSGLKPEAYSYLIAMTAIVKELNSLGKTLRELKRFARAGFVAEIDDHDRVL 311

Query: 313 IEKYQSDLLADGSRLSSWAIQEG--GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV 370
           IEKYQS+ L+ G +L++WA++EG    S+ GVVHERLLAMYICAGRG EAE+QLW+MKL 
Sbjct: 312 IEKYQSETLSRGLQLATWAVEEGQENDSIIGVVHERLLAMYICAGRGPEAEKQLWKMKLA 371

Query: 371 GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDA 430
           G+E + DL+DIV+AICASQ E +AVSRLL+R+E M S  KKKTLSWLLRGY+KGGH  +A
Sbjct: 372 GREPEADLHDIVMAICASQKEVNAVSRLLTRVEFMGSQRKKKTLSWLLRGYVKGGHFEEA 431

Query: 431 AETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLY 490
           AETL  M+D GL+PEY+DRVAV+QG+ ++IQ+  +VEAY++LCKRL D  L+GPCLVY+Y
Sbjct: 432 AETLVSMIDSGLHPEYIDRVAVMQGMTRKIQRPRDVEAYMSLCKRLFDAGLVGPCLVYMY 491

Query: 491 IKKYKLWIIKML 502
           I KYKLWI+KM+
Sbjct: 492 IDKYKLWIVKMM 503

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745858|emb|CBI15914.3| unnamed protein product [Vitis vinifera]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/381 (75%), Positives = 314/381 (82%), Gaps = 28/381 (7%)

Query: 107 MNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYI 166
           MNDRLSARELQLVLVYFSQEGRDSWCALE                            K I
Sbjct: 1   MNDRLSARELQLVLVYFSQEGRDSWCALE----------------------------KLI 32

Query: 167 EEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE 226
           E E  VGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME+KE+AVLFVK VL R IAY+E
Sbjct: 33  EGEHDVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEEKEKAVLFVKEVLRREIAYSE 92

Query: 227 GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEF 286
            DG+G +GGPTGYLAWKMM EG Y  A+KLVIHLRESGLKPEVYSYLIA+TAVVKELNEF
Sbjct: 93  DDGDGHKGGPTGYLAWKMMAEGNYRGAVKLVIHLRESGLKPEVYSYLIAMTAVVKELNEF 152

Query: 287 GKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHER 346
            KALRKLKG+ ++G IAELD +N+ LIEKYQSDLLADG RLSSW IQEG S L+GVV+ER
Sbjct: 153 AKALRKLKGFTKSGLIAELDAENVELIEKYQSDLLADGVRLSSWVIQEGRSPLHGVVYER 212

Query: 347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN 406
           LLAMYICAGRGLEAERQLWEMKLVGKEAD +LYDIVLAICAS+ E SA+SRLL+ +EV +
Sbjct: 213 LLAMYICAGRGLEAERQLWEMKLVGKEADRELYDIVLAICASKKEASAISRLLTGMEVTS 272

Query: 407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNV 466
           S+ +KKTLSWLLRGYIKG H +DA+ET+ KMLDLGL PEY+DR AVLQGLR RIQQ+GNV
Sbjct: 273 SIRRKKTLSWLLRGYIKGSHFDDASETIIKMLDLGLCPEYLDRAAVLQGLRNRIQQTGNV 332

Query: 467 EAYLNLCKRLSDTSLIGPCLV 487
           E YL LCK LSD +LIGPCL 
Sbjct: 333 ETYLKLCKHLSDANLIGPCLT 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3150410|gb|AAC16962.1| putative unknown protein, leucine-rich repeat [Arabidopsis thaliana]

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 297/471 (63%), Positives = 360/471 (76%), Gaps = 20/471 (4%)

Query: 23  LVPQLHGSCLTRPPPRISTRIK-NYQNPSFIATKVSKIREFRFLKSVELDQFVTSDDEDE 81
            +P+LH +   +P  RI   +K NY           K RE    +SVELDQF+TS++E+ 
Sbjct: 20  FLPRLHRNHSVKPNSRIICNLKLNYS--------AGKFREMGLSRSVELDQFITSEEEEG 71

Query: 82  MSEE----FFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVF 137
            +EE    FFEAIEELERMTREPSDILEEMN RLS+RELQL+LVYF+QEGRDSWC LEVF
Sbjct: 72  EAEEIGEGFFEAIEELERMTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCTLEVF 131

Query: 138 EWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKV 197
           EWLKKENRVD E MELMVSIMC WVKK IE+E     V DLL++MDCVGLKPGFSM++KV
Sbjct: 132 EWLKKENRVDEEIMELMVSIMCGWVKKLIEDECNAHQVFDLLIEMDCVGLKPGFSMMDKV 191

Query: 198 ISLYWEMEKKERAVLFVKAVLSR-----GIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD 252
           I+LY EM KKE AVLFVK VL R           G  EG++GGP GYLAWK MV+G Y  
Sbjct: 192 IALYCEMGKKESAVLFVKEVLRRRDGFGYSVVGGGGSEGRKGGPVGYLAWKFMVDGDYRK 251

Query: 253 AIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGL 312
           A+ +V+ LR SGLKPE YSYLIA+TA+VKELN  GK LR+LK + RAG +AE+D  +  L
Sbjct: 252 AVDMVMELRLSGLKPEAYSYLIAMTAIVKELNSLGKTLRELKRFARAGFVAEIDDHDRVL 311

Query: 313 IEKYQSDLLADGSRLSSWAIQEG--GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV 370
           IEKYQS+ L+ G +L++WA++EG    S+ GVVHERLLAMYICAGRG EAE+QLW+MKL 
Sbjct: 312 IEKYQSETLSRGLQLATWAVEEGQENDSIIGVVHERLLAMYICAGRGPEAEKQLWKMKLA 371

Query: 371 GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDA 430
           G+E + DL+DIV+AICASQ E +AVSRLL+R+E M S  KKKTLSWLLRGY+KGGH  +A
Sbjct: 372 GREPEADLHDIVMAICASQKEVNAVSRLLTRVEFMGSQRKKKTLSWLLRGYVKGGHFEEA 431

Query: 431 AETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL 481
           AETL  M+D GL+PEY+DRVAV+QG+ ++IQ+  +VEAY++LCKRL D  L
Sbjct: 432 AETLVSMIDSGLHPEYIDRVAVMQGMTRKIQRPRDVEAYMSLCKRLFDAGL 482

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WNN7	PP176_ARATH	No assigned EC number	0.6361	0.9402	0.9383	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024051001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (511 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	502
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.84
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.67
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.65
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.63
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.58
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.56
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.53
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.51
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.5
PF13041	50	PPR_2: PPR repeat family	99.47
PF13041	50	PPR_2: PPR repeat family	99.45
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.45
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.41
PRK14574	822	hmsH outer membrane protein; Provisional	99.39
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.34
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.33
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.29
PRK14574	822	hmsH outer membrane protein; Provisional	99.27
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.27
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.27
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.2
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.19
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.19
KOG2076	895	consensus RNA polymerase III transcription factor	99.15
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.13
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.07
KOG2003	840	consensus TPR repeat-containing protein [General f	99.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.05
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.02
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.01
PF12854	34	PPR_1: PPR repeat	99.0
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.97
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.95
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.94
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.88
PF12854	34	PPR_1: PPR repeat	98.86
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.85
KOG1126	638	consensus DNA-binding cell division cycle control	98.8
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.78
PRK12370	553	invasion protein regulator; Provisional	98.76
KOG1126	638	consensus DNA-binding cell division cycle control	98.75
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.75
PRK12370	553	invasion protein regulator; Provisional	98.75
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.73
KOG2076	895	consensus RNA polymerase III transcription factor	98.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.64
KOG2003	840	consensus TPR repeat-containing protein [General f	98.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.53
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.5
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.47
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.44
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.43
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.41
KOG1129	478	consensus TPR repeat-containing protein [General f	98.39
KOG1129	478	consensus TPR repeat-containing protein [General f	98.36
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.32
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.27
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.25
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.25
PRK11189	296	lipoprotein NlpI; Provisional	98.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.16
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.16
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.14
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.14
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.13
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.12
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.11
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.1
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.09
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.08
PRK11189	296	lipoprotein NlpI; Provisional	98.08
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.05
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.99
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.98
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.95
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.94
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.91
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.89
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.86
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.84
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.82
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.8
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.78
PRK04841	903	transcriptional regulator MalT; Provisional	97.77
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.74
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.71
PRK04841	903	transcriptional regulator MalT; Provisional	97.7
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.68
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.66
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.65
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.65
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.63
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.57
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.51
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.49
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.38
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.37
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.32
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.28
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.26
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.26
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.22
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.22
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.18
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.17
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.12
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.1
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.08
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.06
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.05
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.04
PRK15359	144	type III secretion system chaperone protein SscB;	97.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.0
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.96
PRK10370	198	formate-dependent nitrite reductase complex subuni	96.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.93
PRK15359	144	type III secretion system chaperone protein SscB;	96.91
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.86
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.76
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.72
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.7
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.7
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.69
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.62
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.59
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	96.54
KOG1125	579	consensus TPR repeat-containing protein [General f	96.49
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.49
PLN02789	320	farnesyltranstransferase	96.48
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.42
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.41
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.34
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.33
KOG1125	579	consensus TPR repeat-containing protein [General f	96.24
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.1
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.01
KOG3941	406	consensus Intermediate in Toll signal transduction	95.96
PLN02789	320	farnesyltranstransferase	95.95
KOG3941	406	consensus Intermediate in Toll signal transduction	95.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.94
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.81
KOG0553	304	consensus TPR repeat-containing protein [General f	95.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.74
KOG3060	289	consensus Uncharacterized conserved protein [Funct	95.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.63
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.51
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	95.48
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.46
PF12688	120	TPR_5: Tetratrico peptide repeat	95.36
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.32
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	95.27
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.02
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.99
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.98
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	94.94
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	94.88
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	94.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	94.79
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.75
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	94.42
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	94.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	94.28
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.26
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	94.08
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.88
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.83
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.74
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	93.69
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.64
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.15
PF12688	120	TPR_5: Tetratrico peptide repeat	93.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	93.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.01
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	92.8
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	92.76
KOG2796	366	consensus Uncharacterized conserved protein [Funct	92.69
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	92.34
PRK10803	263	tol-pal system protein YbgF; Provisional	92.34
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	92.33
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.27
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	92.27
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.22
KOG0553	304	consensus TPR repeat-containing protein [General f	92.0
PF13371	73	TPR_9: Tetratricopeptide repeat	91.95
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.93
PRK10803	263	tol-pal system protein YbgF; Provisional	91.8
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	91.68
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	91.63
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.59
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	90.97
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	90.86
PF13371	73	TPR_9: Tetratricopeptide repeat	90.73
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	90.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	90.35
PF13762	145	MNE1: Mitochondrial splicing apparatus component	90.23
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.0
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.79
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.52
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.34
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.8
KOG1585	308	consensus Protein required for fusion of vesicles	88.79
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.61
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.58
PRK15331	165	chaperone protein SicA; Provisional	88.18
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.81
COG3898	531	Uncharacterized membrane-bound protein [Function u	87.47
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.18
PRK11906	458	transcriptional regulator; Provisional	87.05
PF13512	142	TPR_18: Tetratricopeptide repeat	87.03
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	86.53
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	86.35
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.26
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	86.23
PRK15331	165	chaperone protein SicA; Provisional	85.89
PF13929	292	mRNA_stabil: mRNA stabilisation	85.07
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.0
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	84.8
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	84.6
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	84.35
KOG4555	175	consensus TPR repeat-containing protein [Function	84.04
COG4700	251	Uncharacterized protein conserved in bacteria cont	83.85
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.28
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.22
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	83.1
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	83.07
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	82.92
KOG4555	175	consensus TPR repeat-containing protein [Function	82.89
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	81.87
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	81.68
PHA02875	413	ankyrin repeat protein; Provisional	81.49
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	81.22
PF13762	145	MNE1: Mitochondrial splicing apparatus component	81.18
PF11838	324	ERAP1_C: ERAP1-like C-terminal domain; InterPro: I	80.89
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.58
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	80.54
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	80.13

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-58  Score=492.36  Aligned_cols=388  Identities=13%  Similarity=0.149  Sum_probs=360.0

Q ss_pred             HHHHHHHHHHHhhcC----ChHHHHHH---------------------HhcccChhhHHHHHHHHHHcCCChHHHHHHHH
Q 010739           84 EEFFEAIEELERMTR----EPSDILEE---------------------MNDRLSARELQLVLVYFSQEGRDSWCALEVFE  138 (502)
Q Consensus        84 ~~~~~a~~~~~~~~~----~~~~~~~~---------------------~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~  138 (502)
                      +.+.+|+++|+.|..    .++.+...                     |.. +....|+.+|.+|++.|+. +.|.++|+
T Consensus       384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~-e~A~~lf~  461 (1060)
T PLN03218        384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDI-DGALRVLR  461 (1060)
T ss_pred             cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCH-HHHHHHHH
Confidence            349999999999982    23322221                     111 3344599999999999999 89999999


Q ss_pred             HHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010739          139 WLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAV  217 (502)
Q Consensus       139 ~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m  217 (502)
                      .|.+.| .||..+||++|.++|        +.|++++|.++|++|.+.|+.||..+||+||++|++.|++++|.++|++|
T Consensus       462 ~M~~~Gl~pD~~tynsLI~~y~--------k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M  533 (1060)
T PLN03218        462 LVQEAGLKADCKLYTTLISTCA--------KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM  533 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHH--------hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            999999 999999999999999        99999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhccccHHHHHHHHHH
Q 010739          218 LSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRE--SGLKPEVYSYLIALTAVVKELNEFGKALRKLKG  295 (502)
Q Consensus       218 ~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~  295 (502)
                      .+.|+.||..||+.        ++.++++.|++++|.++|++|..  .|+.||.+||+++|.+|++. |++++|.++|++
T Consensus       534 ~~~Gv~PD~vTYns--------LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~ldeA~elf~~  604 (1060)
T PLN03218        534 RSKNVKPDRVVFNA--------LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDRAKEVYQM  604 (1060)
T ss_pred             HHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence            99999999999999        99999999999999999999986  58999999999999999999 899999999999


Q ss_pred             HHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739          296 YVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA  374 (502)
Q Consensus       296 m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  374 (502)
                      |.+.|+.|+..+|+ .+|.+|++ |++++|.++|++|...|..+ |.++|+++|.+|++.|++++|.++|++|.+.|+.|
T Consensus       605 M~e~gi~p~~~tyn-sLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        605 IHEYNIKGTPEVYT-IAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHcCCCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999 79999999 99999999999999999776 56899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010739          375 DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQ  454 (502)
Q Consensus       375 ~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~  454 (502)
                      |..+|+++|.+|++.|++++|.++|++|...|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||++++.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccccccccHHHHHHHHhhhhhcCC-----chhHHHHH----HHhhcch
Q 010739          455 GLRKRIQQSGNVEAYLNLCKRLSDTSL-----IGPCLVYL----YIKKYKL  496 (502)
Q Consensus       455 ~~~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~li~~----y~~~g~~  496 (502)
                      +|++    .|++++|.+++.+|.+.|+     ++++|+.+    |.+++++
T Consensus       763 a~~k----~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l  809 (1060)
T PLN03218        763 ASER----KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL  809 (1060)
T ss_pred             HHHH----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence            9998    8999999999999988875     56678766    4555544

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.2e-58  Score=491.61  Aligned_cols=376  Identities=12%  Similarity=0.076  Sum_probs=354.0

Q ss_pred             ChHHHHHHHh-cccC-hhh--HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhh
Q 010739           99 EPSDILEEMN-DRLS-ARE--LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGD  174 (502)
Q Consensus        99 ~~~~~~~~~~-~~~~-~~~--~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~  174 (502)
                      +...++.+|. .++. ++.  ++.++.+|++.|.. +.|+++|+.|..   ||..+|+.+|.++|        +.|++++
T Consensus       388 eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~M~~---pd~~Tyn~LL~a~~--------k~g~~e~  455 (1060)
T PLN03218        388 DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKLIRN---PTLSTFNMLMSVCA--------SSQDIDG  455 (1060)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHHcCC---CCHHHHHHHHHHHH--------hCcCHHH
Confidence            3456677776 4443 332  78889999999999 899999998864   89999999999998        9999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739          175 VVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI  254 (502)
Q Consensus       175 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~  254 (502)
                      |.++|++|.+.|+.||..+||+||++|+++|++++|.++|++|.+.|+.||..||+.        ++.++++.|++++|+
T Consensus       456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna--------LI~gy~k~G~~eeAl  527 (1060)
T PLN03218        456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA--------LIDGCARAGQVAKAF  527 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCcCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999        999999999999999


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH--cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHH
Q 010739          255 KLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR--AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWA  331 (502)
Q Consensus       255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m  331 (502)
                      ++|++|.+.|+.||..||+++|.+|++. |++++|.++|++|.+  .|+.||..+|+ .||.+|++ |++++|.++|++|
T Consensus       528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTyn-aLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        528 GAYGIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVG-ALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHH-HHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999 899999999999965  78999999999 79999999 9999999999999


Q ss_pred             HHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 010739          332 IQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKK  411 (502)
Q Consensus       332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~  411 (502)
                      .+.+.++ +..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++++.|...|+.||.
T Consensus       606 ~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~  684 (1060)
T PLN03218        606 HEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT  684 (1060)
T ss_pred             HHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence            9998766 558999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC-----chhHH
Q 010739          412 KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL-----IGPCL  486 (502)
Q Consensus       412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~l  486 (502)
                      .+|++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++    .|++++|.++|++|.+.|+     +++++
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k----~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL  760 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE----GNQLPKALEVLSEMKRLGLCPNTITYSIL  760 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999998    8999999999999988775     56789


Q ss_pred             HHHHHhhcchhhhhc
Q 010739          487 VYLYIKKYKLWIIKM  501 (502)
Q Consensus       487 i~~y~~~g~~~~~~~  501 (502)
                      +++|++.|+++.+..
T Consensus       761 L~a~~k~G~le~A~~  775 (1060)
T PLN03218        761 LVASERKDDADVGLD  775 (1060)
T ss_pred             HHHHHHCCCHHHHHH
Confidence            999999999998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.8e-54  Score=454.25  Aligned_cols=352  Identities=14%  Similarity=0.117  Sum_probs=330.8

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      .|+.+|.+|++.|+. ++|+++|++|.+.| .||..+|+.++.+++        +.|.++.+.+++..|.+.|+.||..+
T Consensus       191 t~n~li~~~~~~g~~-~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~--------~~~~~~~~~~l~~~~~~~g~~~d~~~  261 (697)
T PLN03081        191 SWGTIIGGLVDAGNY-REAFALFREMWEDGSDAEPRTFVVMLRASA--------GLGSARAGQQLHCCVLKTGVVGDTFV  261 (697)
T ss_pred             eHHHHHHHHHHCcCH-HHHHHHHHHHHHhCCCCChhhHHHHHHHHh--------cCCcHHHHHHHHHHHHHhCCCcccee
Confidence            399999999999999 89999999999999 899999999999777        88999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739          194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL  273 (502)
Q Consensus       194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~  273 (502)
                      ||+||++|+++|++++|.++|++|.    .+|+++||+        ++.+++..|++++|+++|++|.+.|+.||..||+
T Consensus       262 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~--------li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~  329 (697)
T PLN03081        262 SCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNS--------MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS  329 (697)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHH--------HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            9999999999999999999999995    468899999        9999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHH
Q 010739          274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYI  352 (502)
Q Consensus       274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  352 (502)
                      ++|.+|++. +++++|.+++.+|.+.|+.||..+|+ +||++|++ |++++|.++|++|.+     +|.++||+||.+|+
T Consensus       330 ~ll~a~~~~-g~~~~a~~i~~~m~~~g~~~d~~~~~-~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~  402 (697)
T PLN03081        330 IMIRIFSRL-ALLEHAKQAHAGLIRTGFPLDIVANT-ALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYG  402 (697)
T ss_pred             HHHHHHHhc-cchHHHHHHHHHHHHhCCCCCeeehH-HHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHH
Confidence            999999999 89999999999999999999999998 79999999 999999999988753     57789999999999


Q ss_pred             HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739          353 CAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV-MNSLCKKKTLSWLLRGYIKGGHINDAA  431 (502)
Q Consensus       353 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~  431 (502)
                      +.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|+.||++|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999975 799999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc----CCchhHHHHHHHhhcchhhhhc
Q 010739          432 ETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT----SLIGPCLVYLYIKKYKLWIIKM  501 (502)
Q Consensus       432 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~li~~y~~~g~~~~~~~  501 (502)
                      +++++|   ++.||..+|++|+.+|+.    .|+++.|.+.++++.+.    ...+..|+++|++.|+++.+..
T Consensus       483 ~~~~~~---~~~p~~~~~~~Ll~a~~~----~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        483 AMIRRA---PFKPTVNMWAALLTACRI----HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             HHHHHC---CCCCCHHHHHHHHHHHHH----cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence            999876   789999999999999988    89999999988877432    2278899999999999987754

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.1e-53  Score=450.04  Aligned_cols=376  Identities=13%  Similarity=0.071  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhh
Q 010739           85 EFFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVK  163 (502)
Q Consensus        85 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~  163 (502)
                      .+.+|+++|+.|.....       ..+.+.+|+.++.+|++.++. +.|.+++..|.+.| .||..+||.+|+.++    
T Consensus       102 ~~~~Al~~f~~m~~~~~-------~~~~~~t~~~ll~a~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~----  169 (697)
T PLN03081        102 RHREALELFEILEAGCP-------FTLPASTYDALVEACIALKSI-RCVKAVYWHVESSGFEPDQYMMNRVLLMHV----  169 (697)
T ss_pred             CHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHh----
Confidence            38889999998862110       012234477777777777777 67777777777777 677777777777777    


Q ss_pred             hhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHH
Q 010739          164 KYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWK  243 (502)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~  243 (502)
                          +.|++++|.++|++|.+    ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.        ++..
T Consensus       170 ----k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~--------ll~a  233 (697)
T PLN03081        170 ----KCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV--------MLRA  233 (697)
T ss_pred             ----cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHH--------HHHH
Confidence                77777777777777754    5777777777777777777777777777777777777666655        4444


Q ss_pred             HHHhCcHHHHHHHHHHHHHcCCCC-------------------------------CHhHHHHHHHHHHhccccHHHHHHH
Q 010739          244 MMVEGKYVDAIKLVIHLRESGLKP-------------------------------EVYSYLIALTAVVKELNEFGKALRK  292 (502)
Q Consensus       244 ~~~~g~~~~a~~~~~~m~~~g~~p-------------------------------~~~ty~~li~~~~~~~~~~~~a~~~  292 (502)
                      ++..|..+.+.+++..|.+.|+.|                               |.++||++|.+|++. |+.++|+++
T Consensus       234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~-g~~~eA~~l  312 (697)
T PLN03081        234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH-GYSEEALCL  312 (697)
T ss_pred             HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhC-CCHHHHHHH
Confidence            444444444444444444444444                               555555555555555 455555555


Q ss_pred             HHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010739          293 LKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG  371 (502)
Q Consensus       293 ~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  371 (502)
                      |++|.+.|+.||..||+ .++.+|++ |++++|.+++++|.+.|.++ |..+||+||.+|++.|++++|.++|++|.   
T Consensus       313 f~~M~~~g~~pd~~t~~-~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---  387 (697)
T PLN03081        313 YYEMRDSGVSIDQFTFS-IMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMP---  387 (697)
T ss_pred             HHHHHHcCCCCCHHHHH-HHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCC---
Confidence            55555555555555554 35555555 55555555555555554333 33455555555555555555555555553   


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 010739          372 KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-LGLYPEYMDRV  450 (502)
Q Consensus       372 ~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~  450 (502)
                       +||..|||+||.+|++.|+.++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.|+..+|+
T Consensus       388 -~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~  466 (697)
T PLN03081        388 -RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA  466 (697)
T ss_pred             -CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence             2455555555555555555555555555555555555555555555555555555555555555543 35555555555


Q ss_pred             HHHHHHHccccccccHHHHHHHHhhhhhc--CCchhHHHHHHHhhcchhhh
Q 010739          451 AVLQGLRKRIQQSGNVEAYLNLCKRLSDT--SLIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       451 ~ll~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~li~~y~~~g~~~~~  499 (502)
                      .+++++++    .|++++|.+++++|...  ..++++|+.+|.+.|+++.+
T Consensus       467 ~li~~l~r----~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a  513 (697)
T PLN03081        467 CMIELLGR----EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG  513 (697)
T ss_pred             hHHHHHHh----cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence            55555554    45555555555544221  11444555555555555443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.8e-53  Score=459.42  Aligned_cols=371  Identities=16%  Similarity=0.116  Sum_probs=334.6

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMTREPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~  164 (502)
                      +++|.++|++|.. |           ...+||.+|.+|++.|+. ++|+++|++|.+.| .||..||+.+|.+++     
T Consensus       238 ~~~A~~lf~~m~~-~-----------d~~s~n~li~~~~~~g~~-~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~-----  299 (857)
T PLN03077        238 VVSARLVFDRMPR-R-----------DCISWNAMISGYFENGEC-LEGLELFFTMRELSVDPDLMTITSVISACE-----  299 (857)
T ss_pred             HHHHHHHHhcCCC-C-----------CcchhHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-----
Confidence            5556666665541 1           134599999999999999 89999999999999 999999999999888     


Q ss_pred             hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739          165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~  244 (502)
                         +.|+++.|.+++..|.+.|+.||..+||+||++|+++|++++|.++|++|.    .||.++||+        ++.++
T Consensus       300 ---~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~--------li~~~  364 (857)
T PLN03077        300 ---LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA--------MISGY  364 (857)
T ss_pred             ---hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH--------HHHHH
Confidence               999999999999999999999999999999999999999999999999996    478999999        99999


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~  323 (502)
                      ++.|++++|+++|++|.+.|+.||..||+++|.+|++. +++++|.++++.|.+.|+.|+..+|| +||++|++ |++++
T Consensus       365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n-~Li~~y~k~g~~~~  442 (857)
T PLN03077        365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVAN-ALIEMYSKCKCIDK  442 (857)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHH-HHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999 89999999999999999999999998 79999999 99999


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIE  403 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~  403 (502)
                      |.++|++|.     .+|.++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.+++..+.
T Consensus       443 A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~  516 (857)
T PLN03077        443 ALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL  516 (857)
T ss_pred             HHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence            999998764     34678999999999999999999999999986 699999999988888888777777777776665


Q ss_pred             HcCC------------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010739          404 VMNS------------------------------LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVL  453 (502)
Q Consensus       404 ~~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll  453 (502)
                      ..|.                              .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|
T Consensus       517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll  596 (857)
T PLN03077        517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL  596 (857)
T ss_pred             HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            5543                              5678889999999999999999999999999999999999999999


Q ss_pred             HHHHccccccccHHHHHHHHhhhh-hcCC-----chhHHHHHHHhhcchhhhhc
Q 010739          454 QGLRKRIQQSGNVEAYLNLCKRLS-DTSL-----IGPCLVYLYIKKYKLWIIKM  501 (502)
Q Consensus       454 ~~~~~~~~~~~~~~~a~~~~~~m~-~~~~-----~~~~li~~y~~~g~~~~~~~  501 (502)
                      .+|++    .|++++|.++|+.|. +.+.     .++++|++|+|+|+++.+..
T Consensus       597 ~a~~~----~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~  646 (857)
T PLN03077        597 CACSR----SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN  646 (857)
T ss_pred             HHHhh----cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence            99998    899999999999997 3343     56789999999999887753

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.6e-52  Score=453.44  Aligned_cols=355  Identities=15%  Similarity=0.125  Sum_probs=319.0

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS  192 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  192 (502)
                      ..|+.+|.+|++.|+. ++|+++|++|...| .||..||+++|++++        ..+++..+.+++.+|.+.|+.||..
T Consensus       153 ~~~n~li~~~~~~g~~-~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~--------~~~~~~~~~~~~~~~~~~g~~~~~~  223 (857)
T PLN03077        153 FSWNVLVGGYAKAGYF-DEALCLYHRMLWAGVRPDVYTFPCVLRTCG--------GIPDLARGREVHAHVVRFGFELDVD  223 (857)
T ss_pred             eEHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhHHHHHHHHhC--------CccchhhHHHHHHHHHHcCCCcccc
Confidence            3499999999999999 89999999999999 999999999999776        8899999999999999999999999


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY  272 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty  272 (502)
                      +||+||++|+++|++++|.++|++|.    .||.++||+        ++.++++.|++++|+++|++|...|+.||..||
T Consensus       224 ~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~--------li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty  291 (857)
T PLN03077        224 VVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNA--------MISGYFENGECLEGLELFFTMRELSVDPDLMTI  291 (857)
T ss_pred             hHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHH--------HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence            99999999999999999999999996    478899999        999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHH
Q 010739          273 LIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMY  351 (502)
Q Consensus       273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  351 (502)
                      +++|.+|++. ++.+.+.+++..|.+.|+.||..+|| .||.+|++ |++++|.++|++|.     .+|.++||+||.+|
T Consensus       292 ~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~d~~~~n-~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~  364 (857)
T PLN03077        292 TSVISACELL-GDERLGREMHGYVVKTGFAVDVSVCN-SLIQMYLSLGSWGEAEKVFSRME-----TKDAVSWTAMISGY  364 (857)
T ss_pred             HHHHHHHHhc-CChHHHHHHHHHHHHhCCccchHHHH-HHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHH
Confidence            9999999999 89999999999999999999999998 79999999 99999999998864     35678999999999


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739          352 ICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA  431 (502)
Q Consensus       352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  431 (502)
                      ++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|...|..|+..+||.||.+|++.|++++|.
T Consensus       365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  444 (857)
T PLN03077        365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL  444 (857)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888888888888888888888877


Q ss_pred             HHHHHHHHC------------------------------CCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739          432 ETLTKMLDL------------------------------GLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL  481 (502)
Q Consensus       432 ~l~~~m~~~------------------------------g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~  481 (502)
                      ++|++|.+.                              ++.||..||..+|.+|++    .|.++.+.++...+.+.|.
T Consensus       445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~----~g~l~~~~~i~~~~~~~g~  520 (857)
T PLN03077        445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR----IGALMCGKEIHAHVLRTGI  520 (857)
T ss_pred             HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh----hchHHHhHHHHHHHHHhCC
Confidence            777776432                              456777777777777766    5666666666666655443


Q ss_pred             -----chhHHHHHHHhhcchhhhh
Q 010739          482 -----IGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       482 -----~~~~li~~y~~~g~~~~~~  500 (502)
                           +.++||++|+|||+++.+.
T Consensus       521 ~~~~~~~naLi~~y~k~G~~~~A~  544 (857)
T PLN03077        521 GFDGFLPNALLDLYVRCGRMNYAW  544 (857)
T ss_pred             CccceechHHHHHHHHcCCHHHHH
Confidence                 6788999999999988764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.85  E-value=2.4e-18  Score=170.91  Aligned_cols=299  Identities=14%  Similarity=0.063  Sum_probs=205.1

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC---HHHHHHHHH
Q 010739          123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG---FSMIEKVIS  199 (502)
Q Consensus       123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~y~~li~  199 (502)
                      +...|++ +.|++.|+.+.+.+..+..++..+...+.        ..|++++|...++.+.+.+..++   ..++..+..
T Consensus        45 ~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~  115 (389)
T PRK11788         45 FLLNEQP-DKAIDLFIEMLKVDPETVELHLALGNLFR--------RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ  115 (389)
T ss_pred             HHhcCCh-HHHHHHHHHHHhcCcccHHHHHHHHHHHH--------HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence            3456777 78888888888776446667777777666        78888888888888877543222   256778888


Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH----hHHHHH
Q 010739          200 LYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV----YSYLIA  275 (502)
Q Consensus       200 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~l  275 (502)
                      .|.+.|++++|.++|+++.+.. .++..+++.        +...+...|++++|.+.++.+...+..++.    ..|..+
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~--------la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (389)
T PRK11788        116 DYLKAGLLDRAEELFLQLVDEG-DFAEGALQQ--------LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL  186 (389)
T ss_pred             HHHHCCCHHHHHHHHHHHHcCC-cchHHHHHH--------HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            8888888888888888887642 223334444        556666678888888888888765433321    234455


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739          276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA  354 (502)
Q Consensus       276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  354 (502)
                      ...+.+. ++.++|...++++.+..  |+.......+...|.+ |++++|.+.|+++....... ...+++.+..+|++.
T Consensus       187 a~~~~~~-~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~  262 (389)
T PRK11788        187 AQQALAR-GDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHhC-CCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHc
Confidence            6666677 67888888888775432  3322222245566777 88888888887776653221 224677777888888


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHH
Q 010739          355 GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK---GGHINDAA  431 (502)
Q Consensus       355 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~  431 (502)
                      |++++|...++++.+.  .|+...+..+...+.+.|++++|.++++.+...  .|+..+++.++..++.   .|+.+++.
T Consensus       263 g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~  338 (389)
T PRK11788        263 GDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESL  338 (389)
T ss_pred             CCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHH
Confidence            8888888888887764  466666677777788888888888888766554  4777777777777664   45777888


Q ss_pred             HHHHHHHHCCCCCCHH
Q 010739          432 ETLTKMLDLGLYPEYM  447 (502)
Q Consensus       432 ~l~~~m~~~g~~p~~~  447 (502)
                      .++++|.+.+++|+..
T Consensus       339 ~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        339 LLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHHhCCCC
Confidence            8888888777666554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.84  E-value=5e-17  Score=178.80  Aligned_cols=350  Identities=13%  Similarity=0.080  Sum_probs=234.8

Q ss_pred             hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739          113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS  192 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  192 (502)
                      +..+..+...+.+.|+. +.|.+.|+.+.+....+...+..+...+.        ..|++++|...++++.+.+ +.+..
T Consensus       465 ~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~--------~~g~~~~A~~~~~~~~~~~-~~~~~  534 (899)
T TIGR02917       465 ASLHNLLGAIYLGKGDL-AKAREAFEKALSIEPDFFPAAANLARIDI--------QEGNPDDAIQRFEKVLTID-PKNLR  534 (899)
T ss_pred             cHHHHHHHHHHHhCCCH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHhC-cCcHH
Confidence            34477778888888888 78888888887766445556666666566        7888888888888887653 34677


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY  272 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty  272 (502)
                      ++..+...|.+.|+.++|..+|+++.+.+- .+...+..        +...+...|++++|.++++.+... .+.+..+|
T Consensus       535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~--------l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~  604 (899)
T TIGR02917       535 AILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALA--------LAQYYLGKGQLKKALAILNEAADA-APDSPEAW  604 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHH--------HHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHH
Confidence            888888888888888888888888866541 11122222        455566678888888888887754 34566778


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHH
Q 010739          273 LIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMY  351 (502)
Q Consensus       273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  351 (502)
                      ..+..++.+. +++++|...++.+.+.. ..+...+. .+...|.+ |++++|...|+++......  +..+|..+...+
T Consensus       605 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~  679 (899)
T TIGR02917       605 LMLGRAQLAA-GDLNKAVSSFKKLLALQ-PDSALALL-LLADAYAVMKNYAKAITSLKRALELKPD--NTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence            8888888888 78888888888775432 11223333 46666777 8888888888777665432  334777777777


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739          352 ICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA  431 (502)
Q Consensus       352 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  431 (502)
                      ...|++++|..+++.+.+.+ ..+...+..+...+...|++++|.+.++.+...+  |+..++..+...+.+.|+.++|.
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV  756 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence            77888888888887777654 3355566666677777777777777777666544  44455666677777777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcc
Q 010739          432 ETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYK  495 (502)
Q Consensus       432 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~  495 (502)
                      +.++++.+.. ..+...+..+...+..    .|+.++|...++.+.+...    +...+..+|.+.|+
T Consensus       757 ~~~~~~l~~~-~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       757 KTLEAWLKTH-PNDAVLRTALAELYLA----QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence            7777766543 2345555555555555    5777777777766644321    23344555555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=2.3e-18  Score=171.04  Aligned_cols=308  Identities=14%  Similarity=0.034  Sum_probs=241.0

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC---ccccccCCCCchHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE---GDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~ty~~~~~~~~~~~~~~~  244 (502)
                      ..|++++|...|+++.+.+ +.+..++..+...|.+.|++++|..+++.+...+..++.   ..+..        +...+
T Consensus        47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~--------La~~~  117 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQE--------LGQDY  117 (389)
T ss_pred             hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHH--------HHHHH
Confidence            5799999999999999863 345678999999999999999999999999875422211   12223        56666


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch---hchHHHHHHHHhc-Cc
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL---DGKNLGLIEKYQS-DL  320 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~~li~~~~~-g~  320 (502)
                      ...|++++|.++|+++.+. -.++..+++.+...+.+. |++++|.+.++.+.+.+-.+..   ..+...+...+.+ |+
T Consensus       118 ~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  195 (389)
T PRK11788        118 LKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQE-KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD  195 (389)
T ss_pred             HHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHh-chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence            7789999999999999875 345678899999999999 8999999999999765433321   1121235556777 99


Q ss_pred             HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739          321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS  400 (502)
Q Consensus       321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~  400 (502)
                      +++|.+.|+++......  +...+..+...|.+.|++++|.++|+++.+.+-.....+++.+..+++..|+.++|.+.++
T Consensus       196 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~  273 (389)
T PRK11788        196 LDAARALLKKALAADPQ--CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR  273 (389)
T ss_pred             HHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999998876432  3458888999999999999999999999875433234678889999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          401 RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       401 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      .+....  |+...+..+...+.+.|++++|..+|+++.+.  .|+..++..++..++.. ...|+.+++...++.|.+.+
T Consensus       274 ~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~-~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        274 RALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAE-AEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             HHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhc-cCCccchhHHHHHHHHHHHH
Confidence            987764  67777788999999999999999999998876  69999999999887631 11358888999888887655


Q ss_pred             CchhHHHHHHHhhc
Q 010739          481 LIGPCLVYLYIKKY  494 (502)
Q Consensus       481 ~~~~~li~~y~~~g  494 (502)
                       +.+.-.+.+.+||
T Consensus       349 -~~~~p~~~c~~cg  361 (389)
T PRK11788        349 -LKRKPRYRCRNCG  361 (389)
T ss_pred             -HhCCCCEECCCCC
Confidence             3333334455555

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.84  E-value=3.2e-17  Score=180.38  Aligned_cols=373  Identities=14%  Similarity=0.014  Sum_probs=256.3

Q ss_pred             HHHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhh
Q 010739           84 EEFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWV  162 (502)
Q Consensus        84 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~  162 (502)
                      +.+++|++.++++. ..|.          ....+..+...+.+.|+. +.|..+|+.+.+.+..+...+..+...++   
T Consensus       513 g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~---  578 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTIDPK----------NLRAILALAGLYLRTGNE-EEAVAWLEKAAELNPQEIEPALALAQYYL---  578 (899)
T ss_pred             CCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchhHHHHHHHHHH---
Confidence            34888999998876 3333          123466777777788888 78888888887766456667777777666   


Q ss_pred             hhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHH
Q 010739          163 KKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAW  242 (502)
Q Consensus       163 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~  242 (502)
                           ..|++++|..+++.+.+. .+.+..+|..+...|.+.|++++|...|+++.+.+ +.+...+..        +..
T Consensus       579 -----~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~--------l~~  643 (899)
T TIGR02917       579 -----GKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL--------LAD  643 (899)
T ss_pred             -----HCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH--------HHH
Confidence                 788888888888887664 34567778888888888888888888888877654 112222322        455


Q ss_pred             HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739          243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL  321 (502)
Q Consensus       243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~  321 (502)
                      .+...|++++|.+.|+++... .+.+..++..+...+.+. |++++|.++++.+.+... .+...+. .+...|.. |++
T Consensus       644 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~g~~  719 (899)
T TIGR02917       644 AYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAA-KRTESAKKIAKSLQKQHP-KAALGFE-LEGDLYLRQKDY  719 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCc-CChHHHH-HHHHHHHHCCCH
Confidence            555678888888888877754 233467777788888888 678888888887755432 2333333 45556666 888


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      ++|.+.|+++.......   .++..+...+.+.|++++|.+.++++.+.. ..+...++.+...|...|+.++|.+.++.
T Consensus       720 ~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  795 (899)
T TIGR02917       720 PAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRT  795 (899)
T ss_pred             HHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            88888887777665333   356667777888888888888888877643 34566677777778888888888888877


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739          402 IEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL  481 (502)
Q Consensus       402 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~  481 (502)
                      +.... ..+...++.+...+.+.|+ ++|.+.+++..+..- -+..++..+...+..    .|+.++|.+.++++.+.+.
T Consensus       796 ~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       796 VVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVE----KGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence            77655 3466777777888888888 778888887766431 233344445555555    6788888888877755332


Q ss_pred             ----chhHHHHHHHhhcchhhhh
Q 010739          482 ----IGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       482 ----~~~~li~~y~~~g~~~~~~  500 (502)
                          +...+...|.+.|+.+.+.
T Consensus       869 ~~~~~~~~l~~~~~~~g~~~~A~  891 (899)
T TIGR02917       869 EAAAIRYHLALALLATGRKAEAR  891 (899)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHH
Confidence                5556777788888776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=6.2e-13  Score=123.08  Aligned_cols=240  Identities=11%  Similarity=0.027  Sum_probs=187.4

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE  226 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~  226 (502)
                      ...+|.++|.++|        +-...+.|.+++++-.....+.+..++|.+|.+-.-..+    .+++.+|.+..+.||.
T Consensus       206 T~et~s~mI~Gl~--------K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl  273 (625)
T KOG4422|consen  206 TDETVSIMIAGLC--------KFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL  273 (625)
T ss_pred             CchhHHHHHHHHH--------HHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence            6689999999999        889999999999999998899999999999987654332    7899999999999999


Q ss_pred             ccccccCCCCchHHHHHHHHhCcHHHH----HHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH----HH
Q 010739          227 GDGEGQQGGPTGYLAWKMMVEGKYVDA----IKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY----VR  298 (502)
Q Consensus       227 ~ty~~~~~~~~~~~~~~~~~~g~~~~a----~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m----~~  298 (502)
                      .|||+        ++....+.|+++.|    ++++.+|++-|+.|...+|..+|..+++.++....+..++.+.    .-
T Consensus       274 ~TfNa--------lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG  345 (625)
T KOG4422|consen  274 FTFNA--------LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG  345 (625)
T ss_pred             HhHHH--------HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence            99999        88888888876654    6788999999999999999999999999943333455555544    22


Q ss_pred             cCCCCchhchHH---HHHHHHhc-CcHHhHHHHHHHHHHcC---CCCch---HhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          299 AGSIAELDGKNL---GLIEKYQS-DLLADGSRLSSWAIQEG---GSSLY---GVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       299 ~g~~p~~~~~~~---~li~~~~~-g~~~~a~~~~~~m~~~~---~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      ..+.|-..+-|.   .-+..|.+ .+.+-|.++-.-.....   ..+++   -+-|..+....|+....+.-+..|+.|.
T Consensus       346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV  425 (625)
T KOG4422|consen  346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV  425 (625)
T ss_pred             CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334443322221   34455667 88888888765443322   11112   2345668888999999999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          369 LVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       369 ~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      -.-+-|+..+...++.+....+.++-..++|..+..+|
T Consensus       426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g  463 (625)
T KOG4422|consen  426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG  463 (625)
T ss_pred             cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence            88889999999999999999999998888887665555

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.65  E-value=2.8e-12  Score=134.47  Aligned_cols=333  Identities=11%  Similarity=0.024  Sum_probs=244.0

Q ss_pred             HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      +.+|..+++... ..|.          .++.+..+..+....|++ +.|.+.|+.+.+....+...+..+...+.     
T Consensus        58 ~~~A~~l~~~~l~~~p~----------~~~~l~~l~~~~l~~g~~-~~A~~~l~~~l~~~P~~~~a~~~la~~l~-----  121 (656)
T PRK15174         58 TDVGLTLLSDRVLTAKN----------GRDLLRRWVISPLASSQP-DAVLQVVNKLLAVNVCQPEDVLLVASVLL-----  121 (656)
T ss_pred             cchhHHHhHHHHHhCCC----------chhHHHHHhhhHhhcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHH-----
Confidence            777777776654 2232          133355566777789999 89999999999887446677777777666     


Q ss_pred             hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739          165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~  244 (502)
                         ..|+.++|...+++..+. -+.+...+..+...+...|++++|...++.+....  |+......        ....+
T Consensus       122 ---~~g~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~--------~~~~l  187 (656)
T PRK15174        122 ---KSKQYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIA--------TCLSF  187 (656)
T ss_pred             ---HcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHH--------HHHHH
Confidence               899999999999999875 23356788999999999999999999999886654  22111111        12235


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~  323 (502)
                      ...|++++|...++.+....-.++...+..+..++.+. |+.++|...+++.....  |+.......+-..|.. |+.++
T Consensus       188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~-g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~e  264 (656)
T PRK15174        188 LNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV-GKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSRE  264 (656)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchh
Confidence            66799999999999987764344555556667788888 89999999999986543  4433322246677888 99886


Q ss_pred             ----HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHH
Q 010739          324 ----GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       324 ----a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                          |...|++......  .+...+..+...+.+.|++++|...+++..+.  .|+ ...+..+-.++...|++++|.+.
T Consensus       265 A~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~  340 (656)
T PRK15174        265 AKLQAAEHWRHALQFNS--DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDE  340 (656)
T ss_pred             hHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence                7899988877543  35568999999999999999999999998864  455 34555566899999999999999


Q ss_pred             HHHHHHcCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739          399 LSRIEVMNSLCKKKT-LSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR  457 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~  457 (502)
                      ++.+...+  |+... +..+...+...|+.++|.+.|++..+..-.--...|...+.++.
T Consensus       341 l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~  398 (656)
T PRK15174        341 FVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD  398 (656)
T ss_pred             HHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence            98887654  44433 33356778999999999999999887642222334444555553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.63  E-value=4.9e-12  Score=132.65  Aligned_cols=330  Identities=8%  Similarity=-0.004  Sum_probs=246.4

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      ...++..+.+.|+. ..|+.+++.......-+...+..+..+..        ..|+.++|...|+++.+. -+-+...+.
T Consensus        45 ~~~~~~~~~~~g~~-~~A~~l~~~~l~~~p~~~~~l~~l~~~~l--------~~g~~~~A~~~l~~~l~~-~P~~~~a~~  114 (656)
T PRK15174         45 IILFAIACLRKDET-DVGLTLLSDRVLTAKNGRDLLRRWVISPL--------ASSQPDAVLQVVNKLLAV-NVCQPEDVL  114 (656)
T ss_pred             HHHHHHHHHhcCCc-chhHHHhHHHHHhCCCchhHHHHHhhhHh--------hcCCHHHHHHHHHHHHHh-CCCChHHHH
Confidence            56778888999999 89999999998887234444444445466        789999999999999875 233567888


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIA  275 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l  275 (502)
                      .+...+.+.|++++|...+++..+..  |+......       .+...+...|++++|...++.+....-.+ ...+..+
T Consensus       115 ~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~-------~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~  184 (656)
T PRK15174        115 LVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFA-------LHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC  184 (656)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH-------HHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH
Confidence            89999999999999999999998753  44322111       14445566799999999999887653222 2233233


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739          276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA  354 (502)
Q Consensus       276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  354 (502)
                       ..+.+. |++++|...++.+.+..-.++...+. .+...+.. |+.++|.+.|++.......  +...+..+-..|.+.
T Consensus       185 -~~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~-~l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~~l~~~  259 (656)
T PRK15174        185 -LSFLNK-SRLPEDHDLARALLPFFALERQESAG-LAVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGLAYYQS  259 (656)
T ss_pred             -HHHHHc-CCHHHHHHHHHHHHhcCCCcchhHHH-HHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc
Confidence             346777 79999999999885553223333332 34566777 9999999999998876533  456888899999999


Q ss_pred             CChHH----HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010739          355 GRGLE----AERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIND  429 (502)
Q Consensus       355 g~~~~----A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  429 (502)
                      |++++    |...|++..+.  .| +...+..+-..+...|++++|...++...... ..+...+..+...|.+.|++++
T Consensus       260 G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        260 GRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTA  336 (656)
T ss_pred             CCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            99986    89999998864  45 45677788899999999999999999887654 2245667778999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHH-HHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          430 AAETLTKMLDLGLYPEYMDRVA-VLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       430 A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      |...|+++...  .|+...+.. +..++..    .|+.++|...++...+.
T Consensus       337 A~~~l~~al~~--~P~~~~~~~~~a~al~~----~G~~deA~~~l~~al~~  381 (656)
T PRK15174        337 ASDEFVQLARE--KGVTSKWNRYAAAALLQ----AGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHh--CccchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            99999998875  355544332 3344445    79999999999887443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.58  E-value=1e-11  Score=115.18  Aligned_cols=337  Identities=12%  Similarity=0.071  Sum_probs=238.1

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      +|..+|.++||.... +.|.+++.+-.... +++..+||.+|.+..        -    -.-.+++.+|....+.||..|
T Consensus       209 t~s~mI~Gl~K~~~~-ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------~----~~~K~Lv~EMisqkm~Pnl~T  275 (625)
T KOG4422|consen  209 TVSIMIAGLCKFSSL-ERARELYKEHRAAKGKVYREAFNGLIGASS--------Y----SVGKKLVAEMISQKMTPNLFT  275 (625)
T ss_pred             hHHHHHHHHHHHHhH-HHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------h----hccHHHHHHHHHhhcCCchHh
Confidence            399999999999999 89999999988655 899999999998443        1    112788999999999999999


Q ss_pred             HHHHHHHHHhcCcHHH----HHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHH-HHHHHHHHHH----cC
Q 010739          194 IEKVISLYWEMEKKER----AVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD-AIKLVIHLRE----SG  264 (502)
Q Consensus       194 y~~li~~~~~~g~~~~----A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~-a~~~~~~m~~----~g  264 (502)
                      +|+++.+.++.|+++.    |.+++.+|++.|+.|...+|.-        ++.+.++.++..+ |..+..++..    +.
T Consensus       276 fNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~--------iik~f~re~dp~k~as~~i~dI~N~ltGK~  347 (625)
T KOG4422|consen  276 FNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHL--------IIKNFKRESDPQKVASSWINDIQNSLTGKT  347 (625)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHH--------HHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence            9999999999998865    5678899999999999999988        8889998877644 4444444443    33


Q ss_pred             CCC----CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCC-----CCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHH
Q 010739          265 LKP----EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGS-----IAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAI  332 (502)
Q Consensus       265 ~~p----~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~-----~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~  332 (502)
                      ++|    |..-|.+.+..|.+. .+.+-|.++. .+.+.|-     .|+  ...|+.-+....+. ..++.-...++.|+
T Consensus       348 fkp~~p~d~~FF~~AM~Ic~~l-~d~~LA~~v~-~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV  425 (625)
T KOG4422|consen  348 FKPITPTDNKFFQSAMSICSSL-RDLELAYQVH-GLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV  425 (625)
T ss_pred             ccCCCCchhHHHHHHHHHHHHh-hhHHHHHHHH-HHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            444    345677888899988 6788887744 4433332     222  22344345666566 77888888888887


Q ss_pred             HcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--h---H--------HHHH
Q 010739          333 QEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN-EG--S---A--------VSRL  398 (502)
Q Consensus       333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~-~~--~---~--------a~~l  398 (502)
                      -.-..+.+ .+...++.+..-+|.++-.-++|..|+..|-.-+...---++.-+|+.. ..  .   +        |..+
T Consensus       426 P~~y~p~~-~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~  504 (625)
T KOG4422|consen  426 PSAYFPHS-QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI  504 (625)
T ss_pred             cceecCCc-hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence            76633322 4777788888889999999999999988774444433333444444433 11  0   0        1111


Q ss_pred             H-------HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHH---HHHHHHHccccccccHH
Q 010739          399 L-------SRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG-LYPEYMDRV---AVLQGLRKRIQQSGNVE  467 (502)
Q Consensus       399 ~-------~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~---~ll~~~~~~~~~~~~~~  467 (502)
                      +       ..|+  .........+...-.+.+.|+.++|.++|....+.| -.|-....+   -++++-..    .+...
T Consensus       505 ~e~~e~~~~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~----~~sps  578 (625)
T KOG4422|consen  505 KEAYESQPIRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV----SNSPS  578 (625)
T ss_pred             HHHHHhhHHHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh----cCCHH
Confidence            1       2233  334456677777788899999999999999997665 224444444   45555444    67888


Q ss_pred             HHHHHHhhhhhcCC
Q 010739          468 AYLNLCKRLSDTSL  481 (502)
Q Consensus       468 ~a~~~~~~m~~~~~  481 (502)
                      .|+..++.|...++
T Consensus       579 qA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  579 QAIEVLQLASAFNL  592 (625)
T ss_pred             HHHHHHHHHHHcCc
Confidence            88888887755443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.56  E-value=2.3e-10  Score=120.21  Aligned_cols=364  Identities=10%  Similarity=-0.026  Sum_probs=247.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +...-..+.+.|++ +.|++.|+...+.. |+...|..+-.++.        ..|++++|+..++...+.. +-+...|.
T Consensus       130 ~k~~G~~~~~~~~~-~~Ai~~y~~al~~~-p~~~~~~n~a~~~~--------~l~~~~~Ai~~~~~al~l~-p~~~~a~~  198 (615)
T TIGR00990       130 LKEKGNKAYRNKDF-NKAIKLYSKAIECK-PDPVYYSNRAACHN--------ALGDWEKVVEDTTAALELD-PDYSKALN  198 (615)
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHhcC-CchHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence            44555677888999 89999999887665 67777777766666        7899999999999887753 23566888


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcC----------------------------CCCCC-cc------------------
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRG----------------------------IAYAE-GD------------------  228 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~----------------------------~~p~~-~t------------------  228 (502)
                      .+-.+|...|++++|..-|......+                            ..|.. ..                  
T Consensus       199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (615)
T TIGR00990       199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA  278 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence            89999999999999977654432111                            01110 00                  


Q ss_pred             -ccc----cCCCCchHHHHHH-----HHhCcHHHHHHHHHHHHHcC-CCCC-HhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739          229 -GEG----QQGGPTGYLAWKM-----MVEGKYVDAIKLVIHLRESG-LKPE-VYSYLIALTAVVKELNEFGKALRKLKGY  296 (502)
Q Consensus       229 -y~~----~~~~~~~~~~~~~-----~~~g~~~~a~~~~~~m~~~g-~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m  296 (502)
                       +..    +.......+..+.     ...+++++|++.|+.....+ ..|+ ...|+.+-..+... |++++|+..+++.
T Consensus       279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~ka  357 (615)
T TIGR00990       279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKS  357 (615)
T ss_pred             hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence             000    0000000011110     11368999999999988764 3444 45677777777778 7999999998887


Q ss_pred             HHcCCCCchh-chHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739          297 VRAGSIAELD-GKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA  374 (502)
Q Consensus       297 ~~~g~~p~~~-~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  374 (502)
                      .+.  .|+.. .|. .+...+.. |++++|...|++.......  +...|..+...+...|++++|...|++..+.  .|
T Consensus       358 l~l--~P~~~~~~~-~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P  430 (615)
T TIGR00990       358 IEL--DPRVTQSYI-KRASMNLELGDPDKAEEDFDKALKLNSE--DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DP  430 (615)
T ss_pred             HHc--CCCcHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--Cc
Confidence            544  45433 332 45566777 9999999999988776433  3458888999999999999999999998864  45


Q ss_pred             C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 010739          375 D-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY--PEYMDRVA  451 (502)
Q Consensus       375 ~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~  451 (502)
                      + ...+..+-..+.+.|++++|...++...... ..+...|+.+...+...|++++|.+.|++.....-.  +.......
T Consensus       431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~  509 (615)
T TIGR00990       431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP  509 (615)
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence            4 5556666688899999999999998876543 335778888999999999999999999998764321  11111111


Q ss_pred             HHHHHHccccccccHHHHHHHHhhhhhcC----CchhHHHHHHHhhcchhhh
Q 010739          452 VLQGLRKRIQQSGNVEAYLNLCKRLSDTS----LIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       452 ll~~~~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~li~~y~~~g~~~~~  499 (502)
                      ++.....-.+..|++++|...+++.....    .....+...|.+.|+++.+
T Consensus       510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA  561 (615)
T TIGR00990       510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA  561 (615)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            11111100112588999999988763322    1345678888888887765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.53  E-value=3.8e-10  Score=118.57  Aligned_cols=350  Identities=15%  Similarity=0.054  Sum_probs=241.3

Q ss_pred             HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      +++|++.|++.. ..|+           +..|..+-.+|.+.|++ +.|++.++...+....+...|..+-.++.     
T Consensus       143 ~~~Ai~~y~~al~~~p~-----------~~~~~n~a~~~~~l~~~-~~Ai~~~~~al~l~p~~~~a~~~~a~a~~-----  205 (615)
T TIGR00990       143 FNKAIKLYSKAIECKPD-----------PVYYSNRAACHNALGDW-EKVVEDTTAALELDPDYSKALNRRANAYD-----  205 (615)
T ss_pred             HHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHhCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHH-----
Confidence            667777776644 2222           33477778888999999 89999999998877446667777777666     


Q ss_pred             hhhhhccHhhHHHHHHHHhhCC-C---------------------------C----CCHHHHHHH---------------
Q 010739          165 YIEEERGVGDVVDLLVDMDCVG-L---------------------------K----PGFSMIEKV---------------  197 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g-~---------------------------~----p~~~~y~~l---------------  197 (502)
                         ..|++++|+.-|......+ +                           .    |........               
T Consensus       206 ---~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (615)
T TIGR00990       206 ---GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED  282 (615)
T ss_pred             ---HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence               7888888876554332111 0                           0    000000000               


Q ss_pred             ------------HHHH------HhcCcHHHHHHHHHHHHHcC-CCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHH
Q 010739          198 ------------ISLY------WEMEKKERAVLFVKAVLSRG-IAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLV  257 (502)
Q Consensus       198 ------------i~~~------~~~g~~~~A~~l~~~m~~~~-~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~  257 (502)
                                  +..+      ...+++++|.+.|+...+.+ ..|+.. .|..        +...+...|++++|+..|
T Consensus       283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~--------lg~~~~~~g~~~eA~~~~  354 (615)
T TIGR00990       283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNL--------RGTFKCLKGKHLEALADL  354 (615)
T ss_pred             ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHH--------HHHHHHHcCCHHHHHHHH
Confidence                        0000      12357889999999988765 233321 1111        333344579999999999


Q ss_pred             HHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHc
Q 010739          258 IHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQE  334 (502)
Q Consensus       258 ~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~  334 (502)
                      ++....  .|+ ...|..+-..+... |++++|...+++..+.  .|+ ...+. .+...|.. |++++|.+.|++....
T Consensus       355 ~kal~l--~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~--~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       355 SKSIEL--DPRVTQSYIKRASMNLEL-GDPDKAEEDFDKALKL--NSEDPDIYY-HRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            998764  565 45777888888888 8999999999988554  333 34443 46666777 9999999999988776


Q ss_pred             CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-
Q 010739          335 GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKK-  412 (502)
Q Consensus       335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~-  412 (502)
                      ...  +...|..+...+.+.|++++|+..|++..+.  .| +...|+.+-..+...|++++|.+.++.........+.. 
T Consensus       429 ~P~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~  504 (615)
T TIGR00990       429 DPD--FIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMY  504 (615)
T ss_pred             Ccc--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccccc
Confidence            533  4457888888999999999999999998754  34 46677888889999999999999998876654221111 


Q ss_pred             -----HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          413 -----TLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY-MDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       413 -----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                           .++.....+...|++++|.+++++.....  |+. ..+..+...+..    .|+.++|++.+++..+.
T Consensus       505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~----~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       505 MNVLPLINKALALFQWKQDFIEAENLCEKALIID--PECDIAVATMAQLLLQ----QGDVDEALKLFERAAEL  571 (615)
T ss_pred             ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHH
Confidence                 11222233445699999999999987654  443 457777777776    79999999999887543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.51  E-value=2.1e-10  Score=128.64  Aligned_cols=357  Identities=12%  Similarity=0.008  Sum_probs=208.3

Q ss_pred             hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHh-----hhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739          113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMC-----SWVKKYIEEERGVGDVVDLLVDMDCV  185 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~-----~~~~~~~~~~~~~~~a~~~~~~m~~~  185 (502)
                      +..+..+-..+.+.|+. ++|.+.|+...+..  .++...|..++...-     ....... +.|++++|...|++..+.
T Consensus       303 ~~a~~~Lg~~~~~~g~~-~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~-~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        303 SEALGALGQAYSQQGDR-ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL-KANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHh
Confidence            34477888899999999 89999999998766  222223333322100     0000111 789999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHH---------------------
Q 010739          186 GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWK---------------------  243 (502)
Q Consensus       186 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~---------------------  243 (502)
                      . +.+...+..+-..|.+.|++++|++.|++..+..  |+.. .+..        +...                     
T Consensus       381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~--------L~~l~~~~~~~~A~~~l~~l~~~~~  449 (1157)
T PRK11447        381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRG--------LANLYRQQSPEKALAFIASLSASQR  449 (1157)
T ss_pred             C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHhcCHHHHHHHHHhCCHHHH
Confidence            3 3466788889999999999999999999998654  3321 1110        1111                     


Q ss_pred             ---------------------HHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCC
Q 010739          244 ---------------------MMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGS  301 (502)
Q Consensus       244 ---------------------~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~  301 (502)
                                           +...|++++|++.|++..+.  .|+ ...+..+...+.+. |+.++|...+++..+.  
T Consensus       450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~-G~~~~A~~~l~~al~~--  524 (1157)
T PRK11447        450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQA-GQRSQADALMRRLAQQ--  524 (1157)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc--
Confidence                                 11234555555555544432  222 23334444444444 4555555555544321  


Q ss_pred             CCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHh---------HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010739          302 IAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGV---------VHERLLAMYICAGRGLEAERQLWEMKLVG  371 (502)
Q Consensus       302 ~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g  371 (502)
                      .|+.......+...+.. ++.++|...++.+....... +..         .+-.+...+...|+.++|..+++.     
T Consensus       525 ~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~-~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----  598 (1157)
T PRK11447        525 KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNS-NIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----  598 (1157)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcCh-hHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----
Confidence            11111100011112223 55555555444322111100 000         011233445566777777766651     


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHH
Q 010739          372 KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY-MDRV  450 (502)
Q Consensus       372 ~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~  450 (502)
                      ...+...+..+-..+...|+.++|.+.++...... ..+...+..+...|...|+.++|.+.++.....  .|+. .++.
T Consensus       599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~  675 (1157)
T PRK11447        599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQR  675 (1157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHH
Confidence            23344455666678888999999999998887764 336778888999999999999999999977653  4443 3344


Q ss_pred             HHHHHHHccccccccHHHHHHHHhhhhhcCCc-----hhH-----HHHHHHhhcchhhhh
Q 010739          451 AVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLI-----GPC-----LVYLYIKKYKLWIIK  500 (502)
Q Consensus       451 ~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~-----li~~y~~~g~~~~~~  500 (502)
                      .+-.++..    .|+.++|...++.+.....-     .++     +-..|.+.|+.+.+.
T Consensus       676 ~la~~~~~----~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~  731 (1157)
T PRK11447        676 RVALAWAA----LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL  731 (1157)
T ss_pred             HHHHHHHh----CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            45555555    78999999999888553211     122     244677777776653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.50  E-value=1.1e-09  Score=117.42  Aligned_cols=375  Identities=9%  Similarity=-0.015  Sum_probs=224.6

Q ss_pred             HHHHHHHHHhhcC-ChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMTR-EPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      .++|++++.+... .|.          .+..+..+-..+.+.|++ ..|.++|+...+....+...+..+...+.     
T Consensus        31 ~~~A~~~~~~~~~~~~~----------~a~~~~~lA~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~l~-----   94 (765)
T PRK10049         31 DAEVITVYNRYRVHMQL----------PARGYAAVAVAYRNLKQW-QNSLTLWQKALSLEPQNDDYQRGLILTLA-----   94 (765)
T ss_pred             HHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----
Confidence            6667666666541 221          122255566666666666 56666666666554334444444444444     


Q ss_pred             hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc-------cCCC--
Q 010739          165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG-------QQGG--  235 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~-------~~~~--  235 (502)
                         ..|+.++|...+++..+. .+.+.. +..+-..+.+.|+.++|...+++..+..  |+......       ..+.  
T Consensus        95 ---~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         95 ---DAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             ---HCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChH
Confidence               566666666666666554 223344 6666666666666666666666665543  32211100       0000  


Q ss_pred             ----------------------CchHHHHHHHH-----hCcH---HHHHHHHHHHHHc-CCCCCHh-HHH----HHHHHH
Q 010739          236 ----------------------PTGYLAWKMMV-----EGKY---VDAIKLVIHLRES-GLKPEVY-SYL----IALTAV  279 (502)
Q Consensus       236 ----------------------~~~~~~~~~~~-----~g~~---~~a~~~~~~m~~~-g~~p~~~-ty~----~li~~~  279 (502)
                                            +....+.....     .+++   ++|++.++.+... .-.|+.. .+.    ..+.++
T Consensus       168 ~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L  247 (765)
T PRK10049        168 PALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL  247 (765)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence                                  00000000000     1223   5677777777654 2233321 111    113445


Q ss_pred             HhccccHHHHHHHHHHHHHcCC-CCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC--chHhHHHHHHHHHHHcC
Q 010739          280 VKELNEFGKALRKLKGYVRAGS-IAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS--LYGVVHERLLAMYICAG  355 (502)
Q Consensus       280 ~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g  355 (502)
                      ... ++.++|+..|+.+.+.+- .|+....  .+...|.. |+.++|...|+++.......  .....+..+..++.+.|
T Consensus       248 l~~-g~~~eA~~~~~~ll~~~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g  324 (765)
T PRK10049        248 LAR-DRYKDVISEYQRLKAEGQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE  324 (765)
T ss_pred             HHh-hhHHHHHHHHHHhhccCCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence            566 689999999999866653 2433222  24556777 99999999998876544221  11235666777888899


Q ss_pred             ChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          356 RGLEAERQLWEMKLVG-----------KEADG---DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       356 ~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      ++++|..+++++.+..           -.|+.   ..+..+...+...|+.++|.++++.+.... .-+...+..+...+
T Consensus       325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~  403 (765)
T PRK10049        325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL  403 (765)
T ss_pred             cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            9999999999888652           12332   233445578888899999999998887654 33577777788899


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhc
Q 010739          422 IKGGHINDAAETLTKMLDLGLYPEYMD-RVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKY  494 (502)
Q Consensus       422 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g  494 (502)
                      ...|+.++|++.+++.+..  .||... +......+.+    .|++++|...++.+.... ..++.+.-+.|.-
T Consensus       404 ~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~----~~~~~~A~~~~~~ll~~~-Pd~~~~~~~~~~~  470 (765)
T PRK10049        404 QARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD----LQEWRQMDVLTDDVVARE-PQDPGVQRLARAR  470 (765)
T ss_pred             HhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            9999999999999987764  466433 3333334444    688999999999887765 5566666555543

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=1.6e-13  Score=91.95  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=45.9

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          409 CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       409 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      ||..+||++|++|++.|++++|.++|++|++.|+.||..||+++|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999999874

>PF13041 PPR_2: PPR repeat family

Probab=99.45  E-value=2.1e-13  Score=91.37  Aligned_cols=50  Identities=28%  Similarity=0.236  Sum_probs=43.9

Q ss_pred             chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010739          339 LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS  388 (502)
Q Consensus       339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~  388 (502)
                      +|+++||++|++|++.|++++|.++|++|.+.|+.||..||+++|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            46788999999999999999999999999999999999999999988875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.45  E-value=3.7e-09  Score=113.47  Aligned_cols=360  Identities=10%  Similarity=-0.002  Sum_probs=237.2

Q ss_pred             cChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739          111 LSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG  190 (502)
Q Consensus       111 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~  190 (502)
                      +++....-.+......|+. ++|++++.........+...+..+...+.        +.|++++|..+|++..+. -+.+
T Consensus        13 ~~~~~~~d~~~ia~~~g~~-~~A~~~~~~~~~~~~~~a~~~~~lA~~~~--------~~g~~~~A~~~~~~al~~-~P~~   82 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQD-AEVITVYNRYRVHMQLPARGYAAVAVAYR--------NLKQWQNSLTLWQKALSL-EPQN   82 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHh-CCCC
Confidence            4455666677777888999 89999999998744445666777777666        899999999999998775 2345


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-  269 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-  269 (502)
                      ...+..+...+.+.|++++|...+++..+..  |+...+..        +...+...|+.++|+..+++....  .|+. 
T Consensus        83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~~~~--------la~~l~~~g~~~~Al~~l~~al~~--~P~~~  150 (765)
T PRK10049         83 DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKANLLA--------LAYVYKRAGRHWDELRAMTQALPR--APQTQ  150 (765)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence            6778889999999999999999999998763  44322333        555556689999999999999875  4443 


Q ss_pred             hHHHHHHHHHHhccccHHH----------------------------------------------HHHHHHHHHHc-CCC
Q 010739          270 YSYLIALTAVVKELNEFGK----------------------------------------------ALRKLKGYVRA-GSI  302 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~----------------------------------------------a~~~~~~m~~~-g~~  302 (502)
                      ..+..+..++.+. +..++                                              |+..++.+.+. .-.
T Consensus       151 ~~~~~la~~l~~~-~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~  229 (765)
T PRK10049        151 QYPTEYVQALRNN-RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN  229 (765)
T ss_pred             HHHHHHHHHHHHC-CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence            3334444444443 34443                                              44444444322 223


Q ss_pred             Cchhc-hHHHH---HHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--
Q 010739          303 AELDG-KNLGL---IEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA--  374 (502)
Q Consensus       303 p~~~~-~~~~l---i~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--  374 (502)
                      |+... +..+.   +..+.. |+.++|...|+++...+.+ +.+...+  +...|...|++++|+.+|++..+..-..  
T Consensus       230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~  307 (765)
T PRK10049        230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIAD  307 (765)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence            33211 11111   122334 8889999999888777643 2232233  4667888899999999988876542111  


Q ss_pred             -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          375 -DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN-----------SLCKK---KTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       375 -~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~-----------~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                       .......+..++...|++++|.++++.+....           ..|+.   ..+..+...+...|+.++|.++++++..
T Consensus       308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~  387 (765)
T PRK10049        308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY  387 (765)
T ss_pred             CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             12345556667788899999988888776543           12231   2344567778888999999999998876


Q ss_pred             CCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhhhh
Q 010739          440 LGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       440 ~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~~~  500 (502)
                      .. +-+...+..+...+..    .|+.++|++.++.......    +.-.+...+.+.|+++.+.
T Consensus       388 ~~-P~n~~l~~~lA~l~~~----~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~  447 (765)
T PRK10049        388 NA-PGNQGLRIDYASVLQA----RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD  447 (765)
T ss_pred             hC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            52 2234445555555545    6888999888887755331    2225555677777766654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.41  E-value=1.7e-09  Score=121.37  Aligned_cols=347  Identities=10%  Similarity=0.010  Sum_probs=238.0

Q ss_pred             HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      +++|++.|++.. ..|.          .+..+..+-..+.+.|++ ++|.+.|+...+....+...+..+...+      
T Consensus       367 ~~eA~~~~~~Al~~~P~----------~~~a~~~Lg~~~~~~g~~-~eA~~~y~~aL~~~p~~~~a~~~L~~l~------  429 (1157)
T PRK11447        367 LAQAERLYQQARQVDNT----------DSYAVLGLGDVAMARKDY-AAAERYYQQALRMDPGNTNAVRGLANLY------  429 (1157)
T ss_pred             HHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHH------
Confidence            566666666654 2222          123366777889999999 8999999999987744555666555533      


Q ss_pred             hhhhhccHhhHHHHHHHHhhCCCC--------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCC
Q 010739          165 YIEEERGVGDVVDLLVDMDCVGLK--------PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGG  235 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~  235 (502)
                         ..++.++|..+++.+....-.        .....+..+...+...|++++|.+.|++..+..  |+.. .+..    
T Consensus       430 ---~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~----  500 (1157)
T PRK11447        430 ---RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYR----  500 (1157)
T ss_pred             ---HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH----
Confidence               345789999888765432100        012346667788899999999999999998765  4421 1111    


Q ss_pred             CchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchH-----
Q 010739          236 PTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKN-----  309 (502)
Q Consensus       236 ~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-----  309 (502)
                          +...+...|++++|...|++....  .|+ ...+..+...+.+. ++.++|...++.+......++.....     
T Consensus       501 ----LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~-~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~  573 (1157)
T PRK11447        501 ----LAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGS-DRDRAALAHLNTLPRAQWNSNIQELAQRLQS  573 (1157)
T ss_pred             ----HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhC-CCHHHHHHHHHhCCchhcChhHHHHHHHHhh
Confidence                455566689999999999998764  343 33333333344555 78999999888763322222211100     


Q ss_pred             ---HHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739          310 ---LGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI  385 (502)
Q Consensus       310 ---~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~  385 (502)
                         ..+...+.. |+.++|.++++.     .| .+...+..+-..+.+.|+.++|+..|++..+.. .-+...+..+...
T Consensus       574 ~~~l~~a~~l~~~G~~~eA~~~l~~-----~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~  646 (1157)
T PRK11447        574 DQVLETANRLRDSGKEAEAEALLRQ-----QP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEV  646 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHh-----CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence               124455777 999999998861     22 233467778888999999999999999998752 2256778888899


Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHccc
Q 010739          386 CASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY--P---EYMDRVAVLQGLRKRI  460 (502)
Q Consensus       386 ~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p---~~~t~~~ll~~~~~~~  460 (502)
                      +...|+.++|.+.++...... ..+...+..+...+...|+.++|.+++++.+...-.  |   +...+..+-..+..  
T Consensus       647 ~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~--  723 (1157)
T PRK11447        647 DIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQ--  723 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHH--
Confidence            999999999999999766542 224556666888899999999999999998875422  2   22344444444444  


Q ss_pred             cccccHHHHHHHHhhhh
Q 010739          461 QQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       461 ~~~~~~~~a~~~~~~m~  477 (502)
                        .|+.++|+..++...
T Consensus       724 --~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        724 --TGQPQQALETYKDAM  738 (1157)
T ss_pred             --cCCHHHHHHHHHHHH
Confidence              799999999988774

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.39  E-value=1.4e-08  Score=107.64  Aligned_cols=352  Identities=11%  Similarity=0.007  Sum_probs=175.8

Q ss_pred             HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      +..|++.|++.. ..|..          +.....++..+...|+. +.|+..++...............+...+.     
T Consensus        50 ~~~Al~~L~qaL~~~P~~----------~~av~dll~l~~~~G~~-~~A~~~~eka~~p~n~~~~~llalA~ly~-----  113 (822)
T PRK14574         50 TAPVLDYLQEESKAGPLQ----------SGQVDDWLQIAGWAGRD-QEVIDVYERYQSSMNISSRGLASAARAYR-----  113 (822)
T ss_pred             HHHHHHHHHHHHhhCccc----------hhhHHHHHHHHHHcCCc-HHHHHHHHHhccCCCCCHHHHHHHHHHHH-----
Confidence            778888887766 33431          00112445555555666 56666666665111112222222222222     


Q ss_pred             hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739          165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~  244 (502)
                         ..|++++|+.+|+++.+..- -|...+..++..|.+.++.++|.+.++++....  |+...|-.        +++-.
T Consensus       114 ---~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~--------layL~  179 (822)
T PRK14574        114 ---NEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMT--------LSYLN  179 (822)
T ss_pred             ---HcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHH--------HHHHH
Confidence               45666666666666655422 234455555666666666666666666665443  33222211        11111


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHH---------------------------------
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKAL---------------------------------  290 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~---------------------------------  290 (502)
                      ...++..+|++.++++.+.  .|+ ...+..+..++.+. |-...|.                                 
T Consensus       180 ~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~-~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~  256 (822)
T PRK14574        180 RATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRN-RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLP  256 (822)
T ss_pred             HhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccc
Confidence            1124444466666666554  232 33334444444444 2222332                                 


Q ss_pred             ---------------HHHHHH-HHcCCCCch-hchHHHHHH---HHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739          291 ---------------RKLKGY-VRAGSIAEL-DGKNLGLIE---KYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLA  349 (502)
Q Consensus       291 ---------------~~~~~m-~~~g~~p~~-~~~~~~li~---~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  349 (502)
                                     .-++.+ ...+-.|.. ..|..+.++   ++.+ |++.++.+.|+.+...+.+-++ .+--.+.+
T Consensus       257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~-y~~~a~ad  335 (822)
T PRK14574        257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD-YARRWAAS  335 (822)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH-HHHHHHHH
Confidence                           223333 112222221 112112222   2334 6777777777776666644333 45566677


Q ss_pred             HHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------CCCH--
Q 010739          350 MYICAGRGLEAERQLWEMKLVG-----KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS-----------LCKK--  411 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-----------~p~~--  411 (502)
                      +|...+++++|+.++.+.....     ..++......|.-++..++++++|..+++.+.....           .||.  
T Consensus       336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~  415 (822)
T PRK14574        336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW  415 (822)
T ss_pred             HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence            7777777777777777765432     122333345666677777777777777766655210           1221  


Q ss_pred             HH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          412 KT-LSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       412 ~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      .. +..++..+...|+..+|++.++++.... +-|......+-+.+..    -|...+|+..++..
T Consensus       416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~----Rg~p~~A~~~~k~a  476 (822)
T PRK14574        416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLA----RDLPRKAEQELKAV  476 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Confidence            11 1225555666777777777777765432 2344444444444444    46666666666544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.34  E-value=4.6e-11  Score=120.02  Aligned_cols=68  Identities=9%  Similarity=0.117  Sum_probs=41.7

Q ss_pred             HHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 010739          135 EVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAV  211 (502)
Q Consensus       135 ~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~  211 (502)
                      .++-.+...| .|+.+||..+|..||        ..|+++.|- +|.-|.-..++.+...++.++.+..+.++.+.+.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc--------~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYC--------TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHc--------ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC
Confidence            4555666666 677777777777777        677777776 6666665555555555555555555555544443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.33  E-value=3.6e-10  Score=113.78  Aligned_cols=271  Identities=13%  Similarity=0.083  Sum_probs=181.3

Q ss_pred             ChHHHHHHHh-cccChhh--HHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhh
Q 010739           99 EPSDILEEMN-DRLSARE--LQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGD  174 (502)
Q Consensus        99 ~~~~~~~~~~-~~~~~~~--~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~  174 (502)
                      .|.+++..+. .|+.|+.  |..+|..||..|+. +.|- +|..|+-.. .++...|+.++.+..        +.++.+.
T Consensus         8 ~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdi-eaat-if~fm~~ksLpv~e~vf~~lv~sh~--------~And~En   77 (1088)
T KOG4318|consen    8 FPTNFLALHEISGILPNRVTYQSLIARYCTKGDI-EAAT-IFPFMEIKSLPVREGVFRGLVASHK--------EANDAEN   77 (1088)
T ss_pred             CcchHHHHHHHhcCCCchhhHHHHHHHHcccCCC-cccc-chhhhhcccccccchhHHHHHhccc--------ccccccC
Confidence            4556666654 6777666  99999999999999 6777 999998877 668899999998666        7777776


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739          175 VVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI  254 (502)
Q Consensus       175 a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~  254 (502)
                      +.           .|...||+.|..+|.+.||+..-..+=+.|..                    +..++...|-.....
T Consensus        78 pk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~--------------------i~~sfs~~Gvgs~e~  126 (1088)
T KOG4318|consen   78 PK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLES--------------------INQSFSDHGVGSPER  126 (1088)
T ss_pred             CC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHH--------------------HHhhhhhhccCcHHH
Confidence            65           58889999999999999998762222222322                    355555555555555


Q ss_pred             HHHHHHHH-cCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc--CcHHhHHHHHHH
Q 010739          255 KLVIHLRE-SGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS--DLLADGSRLSSW  330 (502)
Q Consensus       255 ~~~~~m~~-~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~--g~~~~a~~~~~~  330 (502)
                      .++..+.- .+.-||..+   ++.-..-. |-++.+++++..+ ...-..|-.+     .++-+..  ..+++-....  
T Consensus       127 ~fl~k~~c~p~~lpda~n---~illlv~e-glwaqllkll~~~Pvsa~~~p~~v-----fLrqnv~~ntpvekLl~~c--  195 (1088)
T KOG4318|consen  127 WFLMKIHCCPHSLPDAEN---AILLLVLE-GLWAQLLKLLAKVPVSAWNAPFQV-----FLRQNVVDNTPVEKLLNMC--  195 (1088)
T ss_pred             HHHhhcccCcccchhHHH---HHHHHHHH-HHHHHHHHHHhhCCcccccchHHH-----HHHHhccCCchHHHHHHHH--
Confidence            55544332 245566554   33333334 3466666655554 2211111111     1222222  2222222222  


Q ss_pred             HHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 010739          331 AIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK  410 (502)
Q Consensus       331 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~  410 (502)
                        ......++..+|.+.+.+-..+|+++.|..++.+|++.|+..+.+-|..+|-+   .++...+..++..|.++|+.|+
T Consensus       196 --ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~  270 (1088)
T KOG4318|consen  196 --KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG  270 (1088)
T ss_pred             --HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence              12211334568888888888899999999999999999998888888888866   6788888888899999999999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 010739          411 KKTLSWLLRGYIKGGH  426 (502)
Q Consensus       411 ~~~~~~li~~~~~~g~  426 (502)
                      ..|+...+..+..+|.
T Consensus       271 seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  271 SETQADYVIPQLSNGQ  286 (1088)
T ss_pred             cchhHHHHHhhhcchh
Confidence            9998886666666555

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.29  E-value=9.7e-09  Score=99.95  Aligned_cols=347  Identities=13%  Similarity=0.038  Sum_probs=226.1

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      +.|..+-..+...|+. ..|+++++.+.+...-..+.|..+-.++.        ..|+.+.|...|.+..+  +.|+...
T Consensus       117 e~ysn~aN~~kerg~~-~~al~~y~~aiel~p~fida~inla~al~--------~~~~~~~a~~~~~~alq--lnP~l~c  185 (966)
T KOG4626|consen  117 EAYSNLANILKERGQL-QDALALYRAAIELKPKFIDAYINLAAALV--------TQGDLELAVQCFFEALQ--LNPDLYC  185 (966)
T ss_pred             HHHHHHHHHHHHhchH-HHHHHHHHHHHhcCchhhHHHhhHHHHHH--------hcCCCcccHHHHHHHHh--cCcchhh
Confidence            3488888889999999 89999999998887446677877777777        88999999999888776  5566554


Q ss_pred             HHHHH-HHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhH
Q 010739          194 IEKVI-SLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYS  271 (502)
Q Consensus       194 y~~li-~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t  271 (502)
                      ..+-+ ..+...|++++|..-+.+..+..  |.   |.+    .++-+-..+..+|+..+|+..|++-..  +.|+ ...
T Consensus       186 a~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~---fAi----awsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dA  254 (966)
T KOG4626|consen  186 ARSDLGNLLKAEGRLEEAKACYLKAIETQ--PC---FAI----AWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDA  254 (966)
T ss_pred             hhcchhHHHHhhcccchhHHHHHHHHhhC--Cc---eee----eehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHH
Confidence            44333 33344788888888877665543  21   111    111133444457899999988887664  4555 356


Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhc-hHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739          272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDG-KNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLA  349 (502)
Q Consensus       272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  349 (502)
                      |-.|-+.|... +.+++|+..+..-  ....|+... +. -|-..|-. |.++-|...+++..+....-++  .||.|-.
T Consensus       255 YiNLGnV~ke~-~~~d~Avs~Y~rA--l~lrpn~A~a~g-Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~--Ay~Nlan  328 (966)
T KOG4626|consen  255 YINLGNVYKEA-RIFDRAVSCYLRA--LNLRPNHAVAHG-NLACIYYEQGLLDLAIDTYKRALELQPNFPD--AYNNLAN  328 (966)
T ss_pred             HhhHHHHHHHH-hcchHHHHHHHHH--HhcCCcchhhcc-ceEEEEeccccHHHHHHHHHHHHhcCCCchH--HHhHHHH
Confidence            77777777777 6778887655443  334454332 22 23333555 8888888888887777755555  8888888


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCH
Q 010739          350 MYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHI  427 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~  427 (502)
                      ++-..|++.+|++.+.....  ..|+ ....+.|-..+...|.+++|..++....+..  |. ....|-|-..|-+.|++
T Consensus       329 ALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl  404 (966)
T KOG4626|consen  329 ALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNL  404 (966)
T ss_pred             HHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccH
Confidence            88888888888888887664  3343 3456677778888888888888887655443  33 34556677777788888


Q ss_pred             HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhh
Q 010739          428 NDAAETLTKMLDLGLYPEYM-DRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWI  498 (502)
Q Consensus       428 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~  498 (502)
                      ++|+..+++.++  +.|+.. .|+.+=..|..    -|++++|+..+.....-..    -.+.|-..|-..|++.+
T Consensus       405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke----~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~  474 (966)
T KOG4626|consen  405 DDAIMCYKEALR--IKPTFADALSNMGNTYKE----MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPE  474 (966)
T ss_pred             HHHHHHHHHHHh--cCchHHHHHHhcchHHHH----hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHH
Confidence            888888877653  455432 23333333333    5677777766655533221    11234444555555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.27  E-value=9.8e-08  Score=101.24  Aligned_cols=353  Identities=11%  Similarity=0.071  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVD-NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      |...|. ..+.|++ ..|++.|++..+....+ +..+ .++..+.        ..|+.++|+..+++.... -.......
T Consensus        38 y~~aii-~~r~Gd~-~~Al~~L~qaL~~~P~~~~av~-dll~l~~--------~~G~~~~A~~~~eka~~p-~n~~~~~l  105 (822)
T PRK14574         38 YDSLII-RARAGDT-APVLDYLQEESKAGPLQSGQVD-DWLQIAG--------WAGRDQEVIDVYERYQSS-MNISSRGL  105 (822)
T ss_pred             HHHHHH-HHhCCCH-HHHHHHHHHHHhhCccchhhHH-HHHHHHH--------HcCCcHHHHHHHHHhccC-CCCCHHHH
Confidence            444444 3577999 79999999998887233 2344 6666566        789999999999988721 12233334


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL  273 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~  273 (502)
                      -++...|...|++++|.++|+++.+..  |+. ..+..        +...+...++.++|++.++.....  .|+...|.
T Consensus       106 lalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~g--------La~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l  173 (822)
T PRK14574        106 ASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISG--------MIMTQADAGRGGVVLKQATELAER--DPTVQNYM  173 (822)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHH--------HHHHHhhcCCHHHHHHHHHHhccc--CcchHHHH
Confidence            444668888999999999999998776  332 11111        344455579999999999998765  66766664


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHH------------------------
Q 010739          274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLS------------------------  328 (502)
Q Consensus       274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~------------------------  328 (502)
                      .++..+... ++..+|++.++++.+..  |+...+...++....+ |-...|+++.                        
T Consensus       174 ~layL~~~~-~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v  250 (822)
T PRK14574        174 TLSYLNRAT-DRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV  250 (822)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence            443333333 45656999999885552  3332221123333333 3333333222                        


Q ss_pred             ------------------------HHHHHc-C-CCCch---HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 010739          329 ------------------------SWAIQE-G-GSSLY---GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLY  379 (502)
Q Consensus       329 ------------------------~~m~~~-~-~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  379 (502)
                                              +.+... + .|+..   ....-=.+-++.+.|++.++.+.|+.|...|.+....+-
T Consensus       251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~  330 (822)
T PRK14574        251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR  330 (822)
T ss_pred             hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence                                    222221 1 12211   011123455677899999999999999999988777788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-------------
Q 010739          380 DIVLAICASQNEGSAVSRLLSRIEVMN-----SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG-------------  441 (502)
Q Consensus       380 ~~li~~~~~~~~~~~a~~l~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------  441 (502)
                      ..+.++|...+..++|..+++.+....     ..++......|.-+|...+++++|..+++++.+.-             
T Consensus       331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  410 (822)
T PRK14574        331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKE  410 (822)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCC
Confidence            999999999999999999998875433     12234345679999999999999999999998731             


Q ss_pred             CCCCHHHHHHHHHH-HHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhhh
Q 010739          442 LYPEYMDRVAVLQG-LRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       442 ~~p~~~t~~~ll~~-~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~~  499 (502)
                      -.||...+..+.-. +..    .|++.+|++.++++.....    +...+-+.+...|.-..+
T Consensus       411 pn~d~~~~~~l~a~~~~~----~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A  469 (822)
T PRK14574        411 PNDDWIEGQTLLVQSLVA----LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA  469 (822)
T ss_pred             CCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            23566655444444 344    7999999999999965542    444555666666665444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.27  E-value=2.7e-11  Score=114.27  Aligned_cols=251  Identities=16%  Similarity=0.093  Sum_probs=58.6

Q ss_pred             hhccHhhHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKP-GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV  246 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~  246 (502)
                      +.|++++|.+++++-....-+| |...|..+-..+...++++.|.+.++++...+-. +...|..        ++.- ..
T Consensus        20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~--------l~~l-~~   89 (280)
T PF13429_consen   20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYER--------LIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccc--------cccc-cc
Confidence            5566666666664333222122 2333333334444556666666666666544422 1222222        1111 34


Q ss_pred             hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739          247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~~~~-g~~~~a  324 (502)
                      .+++++|.+++...-+.  .++...+...+..+.+. ++++++.++++.... .....+...+. .+...+.+ |+.++|
T Consensus        90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~a~~~~~~G~~~~A  165 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWL-ALAEIYEQLGDPDKA  165 (280)
T ss_dssp             ------------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHH-HHHHHHHHCCHHHHH
T ss_pred             ccccccccccccccccc--ccccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHcCCHHHH
Confidence            55666666555544332  23444445555555555 455555555555432 11222333222 23333444 555555


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      .+.+++.........+  ..+.++..+...|+.+++..+++...... ..|...+..+-.++...|+.++|...++....
T Consensus       166 ~~~~~~al~~~P~~~~--~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~  242 (280)
T PF13429_consen  166 LRDYRKALELDPDDPD--ARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK  242 (280)
T ss_dssp             HHHHHHHHHH-TT-HH--HHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence            5555554444333222  44445555555555555555554444332 22223334444455555555555555544443


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                      .. ..|......+..++...|+.++|.++.++
T Consensus       243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HS-TT-HHHHHHHHHHHT--------------
T ss_pred             cc-ccccccccccccccccccccccccccccc
Confidence            22 12344444455555555555555554443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.27  E-value=4.5e-09  Score=102.18  Aligned_cols=311  Identities=14%  Similarity=0.084  Sum_probs=237.4

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE  226 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~  226 (502)
                      -..+|+.+-+.+-        ..|++++|+.+++.|.+..- -.+..|..+-.++...|+.+.|.+.|.+..+.+  |+.
T Consensus       115 ~ae~ysn~aN~~k--------erg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l  183 (966)
T KOG4626|consen  115 GAEAYSNLANILK--------ERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDL  183 (966)
T ss_pred             HHHHHHHHHHHHH--------HhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cch
Confidence            5568888888666        89999999999999988532 257899999999999999999999998887655  665


Q ss_pred             ccccccCCCCchHHHHHHHH-hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc
Q 010739          227 GDGEGQQGGPTGYLAWKMMV-EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE  304 (502)
Q Consensus       227 ~ty~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~  304 (502)
                      ....+        ..-++++ .|+.++|...|.+-.+.  .|. .+.|+.|-..+-.. |+...|++.|++-++  ++|+
T Consensus       184 ~ca~s--------~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~-Gei~~aiq~y~eAvk--ldP~  250 (966)
T KOG4626|consen  184 YCARS--------DLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQ-GEIWLAIQHYEEAVK--LDPN  250 (966)
T ss_pred             hhhhc--------chhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhc-chHHHHHHHHHHhhc--CCCc
Confidence            55544        4455555 49999999988876654  554 35677777777777 789999888877643  3454


Q ss_pred             hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010739          305 LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIV  382 (502)
Q Consensus       305 ~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l  382 (502)
                      -...-.-|-..|.. +.+++|...+.+.....  +...+.|..|-..|...|.++-|.+.+++..+  +.|+ ...|+.|
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nl  326 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNL  326 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHH
Confidence            33221247777888 99999999887665543  44557888888889999999999999999885  4565 4679999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcccc
Q 010739          383 LAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM-DRVAVLQGLRKRIQ  461 (502)
Q Consensus       383 i~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~  461 (502)
                      -.++...|++.+|.+.+........ -.....+-|-..|...|.+++|..+|....+  +.|+.. .++.|-.-|..   
T Consensus       327 anALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kq---  400 (966)
T KOG4626|consen  327 ANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQ---  400 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHh---
Confidence            9999999999999999987766552 2466778899999999999999999998765  455543 34555555544   


Q ss_pred             ccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcc
Q 010739          462 QSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYK  495 (502)
Q Consensus       462 ~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~  495 (502)
                       .|++++|+..+++..+   +.|..-++|+..|+
T Consensus       401 -qgnl~~Ai~~Ykealr---I~P~fAda~~NmGn  430 (966)
T KOG4626|consen  401 -QGNLDDAIMCYKEALR---IKPTFADALSNMGN  430 (966)
T ss_pred             -cccHHHHHHHHHHHHh---cCchHHHHHHhcch
Confidence             7999999999887755   45666666666664

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.27  E-value=5.1e-08  Score=96.51  Aligned_cols=279  Identities=10%  Similarity=0.010  Sum_probs=185.2

Q ss_pred             cCCChHHHHHHHHHHHHcCCCChHHHHHH-HHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH--HHHHHHH
Q 010739          126 EGRDSWCALEVFEWLKKENRVDNETMELM-VSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE--KVISLYW  202 (502)
Q Consensus       126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~l-i~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~--~li~~~~  202 (502)
                      .|++ +.|.+.+....+.. .++..+-.+ ...+.        +.|+.+.|...|+++.+  ..|+...+-  .....+.
T Consensus        97 eGd~-~~A~k~l~~~~~~~-~~p~l~~llaA~aA~--------~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l  164 (398)
T PRK10747         97 EGDY-QQVEKLMTRNADHA-EQPVVNYLLAAEAAQ--------QRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL  164 (398)
T ss_pred             CCCH-HHHHHHHHHHHhcc-cchHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence            4888 78887777654443 223333222 33224        89999999999999976  445554333  3467889


Q ss_pred             hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-------hHHHHH
Q 010739          203 EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-------YSYLIA  275 (502)
Q Consensus       203 ~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~ty~~l  275 (502)
                      ..|+++.|...++++.+.+  |+......       .+...++..|++++|.+++..+.+.+..++.       .+|..+
T Consensus       165 ~~g~~~~Al~~l~~~~~~~--P~~~~al~-------ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l  235 (398)
T PRK10747        165 ARNENHAARHGVDKLLEVA--PRHPEVLR-------LAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGL  235 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcC--CCCHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998776  44321111       2566667789999999999999988665433       133334


Q ss_pred             HHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          276 LTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       276 i~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                      +....+. .+.+...++++.+ .+..  .+.... ..+...+.. |+.++|.+++++.... .+  |  .--.++.+.+.
T Consensus       236 ~~~~~~~-~~~~~l~~~w~~lp~~~~--~~~~~~-~~~A~~l~~~g~~~~A~~~L~~~l~~-~~--~--~~l~~l~~~l~  306 (398)
T PRK10747        236 MDQAMAD-QGSEGLKRWWKNQSRKTR--HQVALQ-VAMAEHLIECDDHDTAQQIILDGLKR-QY--D--ERLVLLIPRLK  306 (398)
T ss_pred             HHHHHHh-cCHHHHHHHHHhCCHHHh--CCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhc-CC--C--HHHHHHHhhcc
Confidence            4443344 4456666666666 3322  222222 256777777 8888888888776662 22  2  12223444555


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 010739          354 AGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAE  432 (502)
Q Consensus       354 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  432 (502)
                      .++.+++....+...+.  .|+.. .+.++-..|.+.+++++|.+.|+.....  .|+..+|..+-..+.+.|+.++|.+
T Consensus       307 ~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~  382 (398)
T PRK10747        307 TNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAA  382 (398)
T ss_pred             CCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            68888888888887743  45444 4455557888888888888888877754  4888888888888888888888888


Q ss_pred             HHHHHH
Q 010739          433 TLTKML  438 (502)
Q Consensus       433 l~~~m~  438 (502)
                      ++++-.
T Consensus       383 ~~~~~l  388 (398)
T PRK10747        383 MRRDGL  388 (398)
T ss_pred             HHHHHH
Confidence            888653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.20  E-value=7e-08  Score=95.56  Aligned_cols=283  Identities=12%  Similarity=-0.010  Sum_probs=201.8

Q ss_pred             hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhC
Q 010739          169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEG  248 (502)
Q Consensus       169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g  248 (502)
                      .|+++.|.+.+....+.+-.| ...|-.......+.|+++.|.+.+.++.+..  |+...+..      .....-....|
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~------l~~a~l~l~~g  167 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVE------ITRVRIQLARN  167 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHH------HHHHHHHHHCC
Confidence            599999998888765542222 2234344455589999999999999997643  44322211      00123445579


Q ss_pred             cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-------chHHHHHHHHhc-Cc
Q 010739          249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-------GKNLGLIEKYQS-DL  320 (502)
Q Consensus       249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~~li~~~~~-g~  320 (502)
                      ++++|.+.+++..+.. +-+...+..+...|.+. |+++++.+++..+.+.+..++..       .|. .++..... .+
T Consensus       168 ~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~-~l~~~~~~~~~  244 (398)
T PRK10747        168 ENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWI-GLMDQAMADQG  244 (398)
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence            9999999999998763 23467788889999999 89999999999997776553321       111 22333333 44


Q ss_pred             HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739          321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS  400 (502)
Q Consensus       321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~  400 (502)
                      .+...++++..-..-  +.+......+..++...|+.++|..++++..+.  .||..  -.++.+....++.+++.+..+
T Consensus       245 ~~~l~~~w~~lp~~~--~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e  318 (398)
T PRK10747        245 SEGLKRWWKNQSRKT--RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLR  318 (398)
T ss_pred             HHHHHHHHHhCCHHH--hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHH
Confidence            455555554432221  234457888999999999999999999998873  44442  123344456689999999998


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          401 RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       401 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      ...+.. .-|...+..+-+.+.+.|++++|.+.|+...+.  .|+..+|..+-..+.+    .|+.++|...+++-
T Consensus       319 ~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~----~g~~~~A~~~~~~~  387 (398)
T PRK10747        319 QQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR----LHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence            887655 235667778999999999999999999998875  6999999988888887    79999999988754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.19  E-value=4.3e-10  Score=106.12  Aligned_cols=258  Identities=14%  Similarity=0.032  Sum_probs=102.2

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHH
Q 010739          118 LVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEK  196 (502)
Q Consensus       118 ~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~  196 (502)
                      .+-..+.+.|++ +.|+++++...... .|+...|-.++..++.       ..++.+.|...++++.+.+-. +...+..
T Consensus        13 ~~A~~~~~~~~~-~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~-------~~~~~~~A~~ay~~l~~~~~~-~~~~~~~   83 (280)
T PF13429_consen   13 RLARLLYQRGDY-EKALEVLKKAAQKIAPPDDPEYWRLLADLAW-------SLGDYDEAIEAYEKLLASDKA-NPQDYER   83 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccc-------ccccccccccccccccccccc-ccccccc
Confidence            345667788999 89999996654444 3544333333332442       688999999999999887654 6667888


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc-CCCCCHhHHHHH
Q 010739          197 VISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES-GLKPEVYSYLIA  275 (502)
Q Consensus       197 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~l  275 (502)
                      ++.. ...+++++|.+++++.-++.  ++...+..        .+..+...|+++++.++++..... ...++...|..+
T Consensus        84 l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~--------~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  152 (280)
T PF13429_consen   84 LIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLS--------ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL  152 (280)
T ss_dssp             ---------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH
T ss_pred             cccc-cccccccccccccccccccc--cccchhhH--------HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence            8888 79999999999988765554  33333333        566677789999999999998754 345677788888


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739          276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA  354 (502)
Q Consensus       276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  354 (502)
                      -..+.+. |+.++|++.+++..+.  .|+.......++..+.. |+.+++.++++.........+.  .|..+-.+|...
T Consensus       153 a~~~~~~-G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~--~~~~la~~~~~l  227 (280)
T PF13429_consen  153 AEIYEQL-GDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD--LWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHC-CHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--HCHHHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--HHHHHHHHhccc
Confidence            8888888 7999999999888554  35433222368888888 9999999988887776633333  788999999999


Q ss_pred             CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          355 GRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       355 g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      |+.++|+..|++....  .| |......+.+++...|+.++|.++....
T Consensus       228 g~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  228 GRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             T-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            9999999999998763  45 6666677779999999999999887543

>TIGR00540 hemY_coli hemY protein

Probab=99.19  E-value=7.4e-08  Score=95.90  Aligned_cols=126  Identities=10%  Similarity=0.042  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHH-HHHHhcCChhHHHHHHHHHHHcCCCCC-H--HHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVL-AICASQNEGSAVSRLLSRIEVMNSLCK-K--KTLS  415 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li-~~~~~~~~~~~a~~l~~~m~~~~~~p~-~--~~~~  415 (502)
                      ..+-.+...+...|+.++|.+++++..+..  ||...  +..+. -.....++.+.+.+.++...+..  |+ .  ....
T Consensus       264 ~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~--p~~~~~~ll~  339 (409)
T TIGR00540       264 ALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV--DDKPKCCINR  339 (409)
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC--CCChhHHHHH
Confidence            344455555555555555555555555432  22221  11111 11122344444444444433221  22 2  2333


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhh
Q 010739          416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKR  475 (502)
Q Consensus       416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~  475 (502)
                      ++-..+.+.|++++|.+.|+........||..++..+-..+.+    .|+.++|.+++++
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~----~g~~~~A~~~~~~  395 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ----AGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Confidence            4445555555555555555533333334555555555444444    4555555555444

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.15  E-value=6.1e-07  Score=91.46  Aligned_cols=363  Identities=15%  Similarity=0.046  Sum_probs=252.4

Q ss_pred             hHHHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhh
Q 010739           83 SEEFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSW  161 (502)
Q Consensus        83 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  161 (502)
                      .+.+++|.+++.+.. ..|.          .+-.|.+|-..|-+.|+. ++++..+-......+-|...|..+-....  
T Consensus       152 rg~~eeA~~i~~EvIkqdp~----------~~~ay~tL~~IyEqrGd~-eK~l~~~llAAHL~p~d~e~W~~ladls~--  218 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPR----------NPIAYYTLGEIYEQRGDI-EKALNFWLLAAHLNPKDYELWKRLADLSE--  218 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCcc----------chhhHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCChHHHHHHHHHHH--
Confidence            344777777777665 2232          223399999999999999 78888766665555447788988877444  


Q ss_pred             hhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHH
Q 010739          162 VKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLA  241 (502)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~  241 (502)
                            +.|+++.|.-.|.+..+. -+++...+--=+..|-+.|+...|..-|.+|.+..-..|..-+..        .+
T Consensus       219 ------~~~~i~qA~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d--------~i  283 (895)
T KOG2076|consen  219 ------QLGNINQARYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED--------LI  283 (895)
T ss_pred             ------hcccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH--------HH
Confidence                  899999999999998886 345666666677889999999999999999987653212111111        44


Q ss_pred             HHHHH----hCcHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCC---------------
Q 010739          242 WKMMV----EGKYVDAIKLVIHLRES-GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGS---------------  301 (502)
Q Consensus       242 ~~~~~----~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~---------------  301 (502)
                      +..+.    .++.+.|.+.++.-... +-..+..++++++..+.+. ..++.+...+..+.....               
T Consensus       284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~-~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~  362 (895)
T KOG2076|consen  284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKN-KQSDKALMKIVDDRNRESEKDDSEWDTDERRRE  362 (895)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-HHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence            44433    46668888888877663 3445667788899999998 889999888887754111               


Q ss_pred             -------CCchhchHHHH---HHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          302 -------IAELDGKNLGL---IEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       302 -------~p~~~~~~~~l---i~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                             .|+...|..-+   .-+... ...+....+........ .+..++-.|.-+-.+|...|++.+|+.+|..+..
T Consensus       363 ~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~  442 (895)
T KOG2076|consen  363 EPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN  442 (895)
T ss_pred             cccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence                   12222222112   222223 34444444444445555 3444566888899999999999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------C
Q 010739          370 VGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC-KKKTLSWLLRGYIKGGHINDAAETLTKMLD--------L  440 (502)
Q Consensus       370 ~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------~  440 (502)
                      .-.--+...|--+-.++-..|..+.|.+.++......  | +...--.|-..+-+.|+.|+|.+.++.|..        .
T Consensus       443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~  520 (895)
T KOG2076|consen  443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC  520 (895)
T ss_pred             CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence            7555567788888899999999999999998887654  3 344444577788899999999999999753        2


Q ss_pred             CCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          441 GLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       441 g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      +..|+.....-...-    +.+.|+.++.+.....|.+..
T Consensus       521 a~~~e~ri~~~r~d~----l~~~gk~E~fi~t~~~Lv~~~  556 (895)
T KOG2076|consen  521 AWEPERRILAHRCDI----LFQVGKREEFINTASTLVDDF  556 (895)
T ss_pred             cccHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHH
Confidence            344555444333333    334788888888777776654

>TIGR00540 hemY_coli hemY protein

Probab=99.13  E-value=4e-07  Score=90.67  Aligned_cols=256  Identities=9%  Similarity=-0.015  Sum_probs=146.8

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMV  246 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~  246 (502)
                      ..|+.+.|...|++..+.--.++....-.....+...|+++.|...++.+.+..  |+.. ...        .+...++.
T Consensus       130 ~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~--------ll~~~~~~  199 (409)
T TIGR00540       130 QRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLK--------LAEEAYIR  199 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH--------HHHHHHHH
Confidence            456677777777665543211112223334556666777777777777766654  3321 111        13444444


Q ss_pred             hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH---HhccccHHHHHHHHHHHHHcCC---CCchhchHHHHHHHHhc-C
Q 010739          247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV---VKELNEFGKALRKLKGYVRAGS---IAELDGKNLGLIEKYQS-D  319 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~---~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~~li~~~~~-g  319 (502)
                      .|++++|.+.+..+.+.++.++......-..++   ... +..++..+.+..+.+..-   ..+...+. .+...+.. |
T Consensus       200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~-~~~~~~~~~L~~~~~~~p~~~~~~~~l~~-~~a~~l~~~g  277 (409)
T TIGR00540       200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE-AMADEGIDGLLNWWKNQPRHRRHNIALKI-ALAEHLIDCD  277 (409)
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHCCHHHhCCHHHHH-HHHHHHHHCC
Confidence            677777777777777665433222212222222   211 122222333444422211   01333332 56667777 8


Q ss_pred             cHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H-HHHHHHHHHhcCChhHHH
Q 010739          320 LLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD--L-YDIVLAICASQNEGSAVS  396 (502)
Q Consensus       320 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t-~~~li~~~~~~~~~~~a~  396 (502)
                      +.++|.+++++..+......+..............++.+.+.+.++...+.  .|+..  . ..++-..|.+.|++++|.
T Consensus       278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~  355 (409)
T TIGR00540       278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAA  355 (409)
T ss_pred             ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHH
Confidence            888888888887776544433111222222233357778888888776643  45444  3 345557888888999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739          397 RLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM  437 (502)
Q Consensus       397 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  437 (502)
                      +.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus       356 ~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       356 DAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88886656666788888888888888999999998888874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.07  E-value=8.2e-07  Score=80.40  Aligned_cols=310  Identities=15%  Similarity=0.053  Sum_probs=212.2

Q ss_pred             hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhC
Q 010739          169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEG  248 (502)
Q Consensus       169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g  248 (502)
                      .++.++|.++|-+|.+.. +-+..+.-+|-+.|-+.|..|.|.++-+.+.++-   | .|++. +....--+...++.+|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---d-lT~~q-r~lAl~qL~~Dym~aG  121 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---D-LTFEQ-RLLALQQLGRDYMAAG  121 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---C-CchHH-HHHHHHHHHHHHHHhh
Confidence            589999999999999842 2345566678899999999999999999887542   2 22221 0001111566777889


Q ss_pred             cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHHhc-CcHHhH
Q 010739          249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~~~-g~~~~a  324 (502)
                      -++.|.++|..+.+.|. .-....-.|+..|-.. .++++|++.-+++.+.+-.+..+   .|-.-+-..+.- .+++.|
T Consensus       122 l~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~t-reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A  199 (389)
T COG2956         122 LLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQAT-REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA  199 (389)
T ss_pred             hhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence            99999999999987532 1234556789999999 89999999999897776655433   111123333334 788899


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      ...+.+..+......-  .--.+-..+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+
T Consensus       200 ~~~l~kAlqa~~~cvR--Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         200 RELLKKALQADKKCVR--ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHHhhCcccee--hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            9998887766533311  23334455777999999999999999887655566778888999999999999988877766


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchh
Q 010739          405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGP  484 (502)
Q Consensus       405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~  484 (502)
                      ....+  ..-..+-+.-....-.+.|...+.+-+..  +|+..-+..+++.-..+.+. |...+-+-.++.|.... +.+
T Consensus       278 ~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daee-g~~k~sL~~lr~mvge~-l~~  351 (389)
T COG2956         278 TNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEE-GRAKESLDLLRDMVGEQ-LRR  351 (389)
T ss_pred             ccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccc-cchhhhHHHHHHHHHHH-Hhh
Confidence            54333  33334444334444556666666554443  59999999999998754333 33555555667775554 444


Q ss_pred             HHHHHHHhhc
Q 010739          485 CLVYLYIKKY  494 (502)
Q Consensus       485 ~li~~y~~~g  494 (502)
                      ..-+-+-+||
T Consensus       352 ~~~YRC~~CG  361 (389)
T COG2956         352 KPRYRCQNCG  361 (389)
T ss_pred             cCCceecccC
Confidence            4445555555

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=7.8e-07  Score=83.77  Aligned_cols=296  Identities=14%  Similarity=0.123  Sum_probs=176.1

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH---
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM---  244 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~---  244 (502)
                      +.|+++.|+..|+...+  ..||..+--.|+-++.--|+.++..+.|..|..--..||..-|-.+...|.+.++...   
T Consensus       288 q~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n  365 (840)
T KOG2003|consen  288 QAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN  365 (840)
T ss_pred             ecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence            68999999999998665  3578766555566666789999999999999988777887777543333222222222   


Q ss_pred             ----------------------------------------------------------------HHhCcHHHHHHHHHHH
Q 010739          245 ----------------------------------------------------------------MVEGKYVDAIKLVIHL  260 (502)
Q Consensus       245 ----------------------------------------------------------------~~~g~~~~a~~~~~~m  260 (502)
                                                                                      +++|+++.|+++++-+
T Consensus       366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~  445 (840)
T KOG2003|consen  366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF  445 (840)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence                                                                            2246666676666666


Q ss_pred             HHcCCCCCHhHH-HHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHH-HHHH----HHhcCcHHhHHHHHHHHHHc
Q 010739          261 RESGLKPEVYSY-LIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNL-GLIE----KYQSDLLADGSRLSSWAIQE  334 (502)
Q Consensus       261 ~~~g~~p~~~ty-~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-~li~----~~~~g~~~~a~~~~~~m~~~  334 (502)
                      .+..-+.-...- |...--|.+.|.++..|.+.-+.-+      +..-||. ++.+    +|..|+++.|.+.+++....
T Consensus       446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al------n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n  519 (840)
T KOG2003|consen  446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL------NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN  519 (840)
T ss_pred             HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh------cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence            554221111111 1111112222233444433222111      1111111 1111    14446677777766665544


Q ss_pred             CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH--------------------------------HCCCCC-CHHHHHH
Q 010739          335 GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK--------------------------------LVGKEA-DGDLYDI  381 (502)
Q Consensus       335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------------------------------~~g~~p-~~~t~~~  381 (502)
                      ...-. ...||+=+ .+-..|++++|++.|-++.                                ...+.| |......
T Consensus       520 dasc~-ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk  597 (840)
T KOG2003|consen  520 DASCT-EALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK  597 (840)
T ss_pred             chHHH-HHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence            32111 12333322 2344566666666554432                                222333 5556666


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcccc
Q 010739          382 VLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQ  461 (502)
Q Consensus       382 li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~  461 (502)
                      |-+.|-+.|+-.+|.+.+-+--. -+..|..|..||-.-|......++|...|++.  .=+.|+...|..++..|.+.  
T Consensus       598 l~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~kwqlmiasc~rr--  672 (840)
T KOG2003|consen  598 LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQSKWQLMIASCFRR--  672 (840)
T ss_pred             HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHHHHHHHHHHHHHh--
Confidence            66777777777777665532211 13458899999999999999999999999974  34789999999999999754  


Q ss_pred             ccccHHHHHHHHhhhhhc
Q 010739          462 QSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       462 ~~~~~~~a~~~~~~m~~~  479 (502)
                       .|+...|..+++...+.
T Consensus       673 -sgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  673 -SGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             -cccHHHHHHHHHHHHHh
Confidence             89999999998877544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.05  E-value=3.1e-06  Score=91.93  Aligned_cols=302  Identities=11%  Similarity=-0.023  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHH-cC--CCChHHHHHHHHHHhhhhh--------hhhhh----------hccHhh
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKK-EN--RVDNETMELMVSIMCSWVK--------KYIEE----------ERGVGD  174 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~-~~--~~~~~~~~~li~~~~~~~~--------~~~~~----------~~~~~~  174 (502)
                      ...+---..+.|+. ++|..+|+.... .+  .++....+-++..+.+...        .+. +          .|+..+
T Consensus       379 l~q~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~  456 (987)
T PRK09782        379 LDQLTWQLMQNGQS-REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS-KPLPLAEQRQWQSQLPG  456 (987)
T ss_pred             HHHHHHHHHHcccH-HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc-cccccchhHHHHhhhhh
Confidence            33344455778888 899999988876 22  4555555566665552100        000 0          122222


Q ss_pred             HHHHHHHHhhC-CC-CC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcH
Q 010739          175 VVDLLVDMDCV-GL-KP--GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKY  250 (502)
Q Consensus       175 a~~~~~~m~~~-g~-~p--~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~  250 (502)
                      +....+...+. +. ++  +...|..+-.++.. |+.++|...+.+.....  |+......        +.......|++
T Consensus       457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~--------lA~al~~~Gr~  525 (987)
T PRK09782        457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA--------VAYQAYQVEDY  525 (987)
T ss_pred             hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH--------HHHHHHHCCCH
Confidence            22112211111 12 33  56778888888877 88888999887776554  55321111        23333467999


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHH
Q 010739          251 VDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSS  329 (502)
Q Consensus       251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~  329 (502)
                      ++|...|+++...  .|+...+..+..++.+. |+.++|...+++..+..  |+.......+...... |++++|...++
T Consensus       526 eeAi~~~rka~~~--~p~~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~  600 (987)
T PRK09782        526 ATALAAWQKISLH--DMSNEDLLAAANTAQAA-GNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLT  600 (987)
T ss_pred             HHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            9999999987554  45555566667778888 79999999999886654  4333221123333444 99999999999


Q ss_pred             HHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 010739          330 WAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRIEVMNSL  408 (502)
Q Consensus       330 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~  408 (502)
                      +...... .  ...|..+-..+.+.|+.++|+..|++..+.  .|+.. .++.+-..+...|+.++|.+.++...... .
T Consensus       601 ~AL~l~P-~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P  674 (987)
T PRK09782        601 RSLNIAP-S--ANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-P  674 (987)
T ss_pred             HHHHhCC-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence            8876654 2  458889999999999999999999998864  56544 45555578999999999999998887654 2


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          409 CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       409 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      -+...+..+-.++...|++++|...|++..+..
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            367778889999999999999999999987654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.02  E-value=4.2e-06  Score=90.92  Aligned_cols=289  Identities=12%  Similarity=0.029  Sum_probs=195.5

Q ss_pred             hhccHhhHHHHHHHHhhC-C-CCCCHHHHHHHHHHHHhcCc---HHHHHHH------------HHHHHH-----------
Q 010739          168 EERGVGDVVDLLVDMDCV-G-LKPGFSMIEKVISLYWEMEK---KERAVLF------------VKAVLS-----------  219 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~-g-~~p~~~~y~~li~~~~~~g~---~~~A~~l------------~~~m~~-----------  219 (502)
                      +.|+.++|.++|+..... + ..++...-+-|+..|.+.+.   ..+|..+            ..+..+           
T Consensus       388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  467 (987)
T PRK09782        388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRL  467 (987)
T ss_pred             HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHh
Confidence            678899999999987662 2 33455666788888888877   3444333            111111           


Q ss_pred             cCCCCCCccccccCCCCchHH-HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 010739          220 RGIAYAEGDGEGQQGGPTGYL-AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR  298 (502)
Q Consensus       220 ~~~~p~~~ty~~~~~~~~~~~-~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~  298 (502)
                      .+..|+.  |+.     .... .-.+...|+.++|+..|.+-...  .|+......+...+... |++++|...++.+..
T Consensus       468 l~~~p~~--~~~-----~a~~~LG~~l~~~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~-Gr~eeAi~~~rka~~  537 (987)
T PRK09782        468 LGDMSPS--YDA-----AAWNRLAKCYRDTLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV-EDYATALAAWQKISL  537 (987)
T ss_pred             cccCCCC--CCH-----HHHHHHHHHHHhCCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC-CCHHHHHHHHHHHhc
Confidence            0011110  111     0011 11222348888999988777654  47755444444445567 799999999988744


Q ss_pred             cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 010739          299 AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD  377 (502)
Q Consensus       299 ~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  377 (502)
                      .  .|+...+. .+...+.+ |+.++|.+.++.........  ...+..+.....+.|++++|...+++..+  ..|+..
T Consensus       538 ~--~p~~~a~~-~la~all~~Gd~~eA~~~l~qAL~l~P~~--~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~  610 (987)
T PRK09782        538 H--DMSNEDLL-AAANTAQAAGNGAARDRWLQQAEQRGLGD--NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSAN  610 (987)
T ss_pred             c--CCCcHHHH-HHHHHHHHCCCHHHHHHHHHHHHhcCCcc--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHH
Confidence            3  23333232 35556677 99999999999888765222  22343444444556999999999999885  457788


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 010739          378 LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE-YMDRVAVLQGL  456 (502)
Q Consensus       378 t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~  456 (502)
                      .|..+-..+.+.|+.++|...++...... ..+...++.+-..+...|+.++|.+.|++..+.  .|+ ...+..+-.++
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al  687 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVN  687 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            88888899999999999999999887765 235667777888999999999999999998875  353 44555566666


Q ss_pred             HccccccccHHHHHHHHhhhhhcC
Q 010739          457 RKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       457 ~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      ..    .|+.++|+..+++..+..
T Consensus       688 ~~----lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        688 QR----LDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HH----CCCHHHHHHHHHHHHhcC
Confidence            55    799999999998885543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.01  E-value=1.8e-06  Score=80.52  Aligned_cols=288  Identities=11%  Similarity=-0.026  Sum_probs=209.9

Q ss_pred             cCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 010739          126 EGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME  205 (502)
Q Consensus       126 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g  205 (502)
                      .|++ .+|..+..+-.+.+......|-.-..++-        +.|+.+.+-+++.+..+.--.++...+-+.-......|
T Consensus        97 eG~~-~qAEkl~~rnae~~e~p~l~~l~aA~AA~--------qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          97 EGDF-QQAEKLLRRNAEHGEQPVLAYLLAAEAAQ--------QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             cCcH-HHHHHHHHHhhhcCcchHHHHHHHHHHHH--------hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            5889 79999998877776223334444445444        88999999999999988755677888888899999999


Q ss_pred             cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHH
Q 010739          206 KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-------YSYLIALTA  278 (502)
Q Consensus       206 ~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~ty~~li~~  278 (502)
                      |.+.|..-++++.+.+-.+..         +.-+....+...|++.+...++..|.+.|+--|.       .+|+.+++-
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~---------vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q  238 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPE---------VLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ  238 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChH---------HHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence            999999999999877633221         1112455666689999999999999999876654       478888888


Q ss_pred             HHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCC
Q 010739          279 VVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGR  356 (502)
Q Consensus       279 ~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  356 (502)
                      .... ++.+.-...+++. .+..-.|....   +++.-+.. |+.++|.++.++..+.+-.+.     -...-.+.+-++
T Consensus       239 ~~~~-~~~~gL~~~W~~~pr~lr~~p~l~~---~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----L~~~~~~l~~~d  309 (400)
T COG3071         239 ARDD-NGSEGLKTWWKNQPRKLRNDPELVV---AYAERLIRLGDHDEAQEIIEDALKRQWDPR-----LCRLIPRLRPGD  309 (400)
T ss_pred             Hhcc-ccchHHHHHHHhccHHhhcChhHHH---HHHHHHHHcCChHHHHHHHHHHHHhccChh-----HHHHHhhcCCCC
Confidence            8877 5677766677777 55566666664   57777777 999999998887777665442     112234445666


Q ss_pred             hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739          357 GLEAERQLWEMK-LVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLT  435 (502)
Q Consensus       357 ~~~A~~l~~~m~-~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~  435 (502)
                      .+.-.+..+.-. .++..|  ..+.++=..|.+.+.+.+|.+.|+....  ..|+..+|+.+-++|.+.|+.++|.++++
T Consensus       310 ~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~  385 (400)
T COG3071         310 PEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR  385 (400)
T ss_pred             chHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence            666666666543 345555  4455555778888889999999985544  46889999999999999999999998888


Q ss_pred             HHHHCCCCC
Q 010739          436 KMLDLGLYP  444 (502)
Q Consensus       436 ~m~~~g~~p  444 (502)
                      +-...-..|
T Consensus       386 e~L~~~~~~  394 (400)
T COG3071         386 EALLLTRQP  394 (400)
T ss_pred             HHHHHhcCC
Confidence            765433333

>PF12854 PPR_1: PPR repeat

Probab=99.00  E-value=5e-10  Score=67.43  Aligned_cols=34  Identities=15%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739          185 VGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL  218 (502)
Q Consensus       185 ~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~  218 (502)
                      .|+.||..|||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4899999999999999999999999999999984

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.97  E-value=4.3e-07  Score=82.65  Aligned_cols=200  Identities=12%  Similarity=-0.043  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE  268 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~  268 (502)
                      ....+..+...|.+.|++++|.+.+++..+..  |+. ..+..        +...+...|++++|.+.+++..... +.+
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~--------la~~~~~~~~~~~A~~~~~~al~~~-~~~   98 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLA--------LALYYQQLGELEKAEDSFRRALTLN-PNN   98 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhhC-CCC
Confidence            35667777778888888888888887776543  221 11111        3333344566666666666655442 123


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      ...+..+...+... |++++|.+.+++..+....+.                                   ....+..+.
T Consensus        99 ~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~  142 (234)
T TIGR02521        99 GDVLNNYGTFLCQQ-GKYEQAMQQFEQAIEDPLYPQ-----------------------------------PARSLENAG  142 (234)
T ss_pred             HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcccccc-----------------------------------chHHHHHHH
Confidence            34444455555555 566666666655543221111                                   112333344


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  428 (502)
                      ..+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++..... ...+...+..+...+...|+.+
T Consensus       143 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  220 (234)
T TIGR02521       143 LCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVA  220 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHH
Confidence            44444555555555554444321 112233444444445555555555555444433 1223344444455555555555


Q ss_pred             HHHHHHHHHH
Q 010739          429 DAAETLTKML  438 (502)
Q Consensus       429 ~A~~l~~~m~  438 (502)
                      +|..+.+.+.
T Consensus       221 ~a~~~~~~~~  230 (234)
T TIGR02521       221 AAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=4.2e-07  Score=82.23  Aligned_cols=239  Identities=16%  Similarity=0.122  Sum_probs=170.5

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHc-CCCCchhchH-HHHHHHHh
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKPEV-YSYLIALTAVVKELNEFGKALRKLKGYVRA-GSIAELDGKN-LGLIEKYQ  317 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~-~~li~~~~  317 (502)
                      -.|++.+.+.++|.++|-+|.+.  .|.+ .+--+|-+.|-+. |.+|+|+++-..+.+. ++.-+-.... -.|-.=|.
T Consensus        42 GlNfLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsR-GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym  118 (389)
T COG2956          42 GLNFLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSR-GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM  118 (389)
T ss_pred             HHHHHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence            56778899999999999999974  3332 2334455666666 8999999987777544 2222222210 01233388


Q ss_pred             c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCh
Q 010739          318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD----LYDIVLAICASQNEG  392 (502)
Q Consensus       318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~li~~~~~~~~~  392 (502)
                      . |-+|.|+.+|..+.+.+.....  ..-.|+.-|-+..+|++|.++-+++...+-.+..+    .|.-+-.......++
T Consensus       119 ~aGl~DRAE~~f~~L~de~efa~~--AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         119 AAGLLDRAEDIFNQLVDEGEFAEG--ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HhhhhhHHHHHHHHHhcchhhhHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            8 9999999999998887744444  77889999999999999999999998776554322    233444455556788


Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHH
Q 010739          393 SAVSRLLSRIEVMNSLCKKKTLSW-LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLN  471 (502)
Q Consensus       393 ~~a~~l~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~  471 (502)
                      +.|..+++.....+  |+..--++ +-+.+...|+++.|.+.++...+.+..--..+...|..+|..    -|+.++.+.
T Consensus       197 d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~  270 (389)
T COG2956         197 DRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLN  270 (389)
T ss_pred             HHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHH
Confidence            88888887766554  33332333 667788899999999999999988766566677788888876    899999999


Q ss_pred             HHhhhhhcCCchhHHHHHHH
Q 010739          472 LCKRLSDTSLIGPCLVYLYI  491 (502)
Q Consensus       472 ~~~~m~~~~~~~~~li~~y~  491 (502)
                      .+..+.+.. ...+++.+..
T Consensus       271 fL~~~~~~~-~g~~~~l~l~  289 (389)
T COG2956         271 FLRRAMETN-TGADAELMLA  289 (389)
T ss_pred             HHHHHHHcc-CCccHHHHHH
Confidence            988887765 5555555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.94  E-value=7.2e-07  Score=81.15  Aligned_cols=198  Identities=13%  Similarity=0.018  Sum_probs=142.1

Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER  346 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~  346 (502)
                      ...+..+...+.+. +++++|.+.+++..+.  .|+. ..+. .+...|.. |+.++|.+.+++........  ...+..
T Consensus        31 ~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~--~p~~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~  104 (234)
T TIGR02521        31 AKIRVQLALGYLEQ-GDLEVAKENLDKALEH--DPDDYLAYL-ALALYYQQLGELEKAEDSFRRALTLNPNN--GDVLNN  104 (234)
T ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHh--CcccHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHH
Confidence            34555566666666 6777777777766443  2332 2222 35555666 88888888887776654333  347778


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          347 LLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       347 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                      +...+...|++++|...+++.......| ....+..+-..+...|++++|.+.++...... ..+...+..+...+...|
T Consensus       105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  183 (234)
T TIGR02521       105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG  183 (234)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence            8888899999999999999988753333 34456667788899999999999998877654 225667888999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739          426 HINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       426 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      ++++|.+.+++..+. ...+...+..+...+..    .|+.++|....+.+..
T Consensus       184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARA----LGDVAAAQRYGAQLQK  231 (234)
T ss_pred             CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHh
Confidence            999999999999876 33455566555555555    6899999988776644

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.88  E-value=1e-05  Score=75.58  Aligned_cols=286  Identities=9%  Similarity=-0.033  Sum_probs=202.6

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHhcccChhh-HHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhh
Q 010739           86 FFEAIEELERMTREPSDILEEMNDRLSARE-LQLVLVYFSQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVK  163 (502)
Q Consensus        86 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~  163 (502)
                      |.+|.+++.+-..          ++-.|-. |-.-..+--+.|+. +.+-..+.+..+.. .++...+-+..+.+.    
T Consensus       100 ~~qAEkl~~rnae----------~~e~p~l~~l~aA~AA~qrgd~-~~an~yL~eaae~~~~~~l~v~ltrarlll----  164 (400)
T COG3071         100 FQQAEKLLRRNAE----------HGEQPVLAYLLAAEAAQQRGDE-DRANRYLAEAAELAGDDTLAVELTRARLLL----  164 (400)
T ss_pred             HHHHHHHHHHhhh----------cCcchHHHHHHHHHHHHhcccH-HHHHHHHHHHhccCCCchHHHHHHHHHHHH----
Confidence            7777777766221          1112222 66666677778888 79999988887763 455556666666566    


Q ss_pred             hhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-------ccccccCCCC
Q 010739          164 KYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-------GDGEGQQGGP  236 (502)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~ty~~~~~~~  236 (502)
                          ..|+.+.|..-+++..+.+-. +........++|.+.|++.++..++..|.+.|+--|.       .+|+.     
T Consensus       165 ----~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g-----  234 (400)
T COG3071         165 ----NRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG-----  234 (400)
T ss_pred             ----hCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH-----
Confidence                899999999999998887543 6778999999999999999999999999999854332       11111     


Q ss_pred             chHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHH
Q 010739          237 TGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKY  316 (502)
Q Consensus       237 ~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~  316 (502)
                         ++.-....+..+.-...|+....+ .+-+...-.+++.-+.+. |+.++|.+++.+-.+.+.+|+...    ++ .+
T Consensus       235 ---lL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l-~~~~~A~~~i~~~Lk~~~D~~L~~----~~-~~  304 (400)
T COG3071         235 ---LLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRL-GDHDEAQEIIEDALKRQWDPRLCR----LI-PR  304 (400)
T ss_pred             ---HHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHc-CChHHHHHHHHHHHHhccChhHHH----HH-hh
Confidence               111122223334434455554433 455556666788888888 899999999999999988887322    22 24


Q ss_pred             hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010739          317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAV  395 (502)
Q Consensus       317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a  395 (502)
                      .+ ++.+.-.+..+.-...-...+  ..+.+|-.-|.+++.+.+|...|+.-.  ...|+..+|+-+-+++.+.|+...|
T Consensus       305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHH
Confidence            44 666666665554343333333  488899999999999999999999544  6789999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCC
Q 010739          396 SRLLSRIEVMNSLCK  410 (502)
Q Consensus       396 ~~l~~~m~~~~~~p~  410 (502)
                      .++.++-...-..|+
T Consensus       381 ~~~r~e~L~~~~~~~  395 (400)
T COG3071         381 EQVRREALLLTRQPN  395 (400)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            999977654444443

>PF12854 PPR_1: PPR repeat

Probab=98.86  E-value=3.3e-09  Score=63.85  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=22.3

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739          406 NSLCKKKTLSWLLRGYIKGGHINDAAETLTKM  437 (502)
Q Consensus       406 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  437 (502)
                      |+.||..|||+||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56677777777777777777777777777666

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.85  E-value=5.5e-06  Score=83.36  Aligned_cols=288  Identities=14%  Similarity=0.066  Sum_probs=197.0

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH-H
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM-V  246 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~-~  246 (502)
                      ..|+.++|+..+++-.+. +......+...-..|.+.|+.++|..++..+.+++  |+-..|-.        .+..+. .
T Consensus        16 e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~--------~L~~~~g~   84 (517)
T PF12569_consen   16 EAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYR--------GLEEALGL   84 (517)
T ss_pred             HCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHH--------HHHHHHhh
Confidence            789999999999875443 44456677888899999999999999999999988  77766654        333333 1


Q ss_pred             -----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHH-HHHHHHHHHHHcCCCCchhchHHHHHHHHhc-C
Q 010739          247 -----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFG-KALRKLKGYVRAGSIAELDGKNLGLIEKYQS-D  319 (502)
Q Consensus       247 -----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~-~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g  319 (502)
                           ..+.+...++|+++...-  |.....--+.-.+... ..+. .+...+..+...|+ |..+  + .|-..|.. .
T Consensus        85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g-~~F~~~~~~yl~~~l~Kgv-PslF--~-~lk~Ly~d~~  157 (517)
T PF12569_consen   85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEG-DEFKERLDEYLRPQLRKGV-PSLF--S-NLKPLYKDPE  157 (517)
T ss_pred             hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCH-HHHHHHHHHHHHHHHhcCC-chHH--H-HHHHHHcChh
Confidence                 236788888999887662  4443333333333322 3443 34444555577776 4333  2 46667777 7


Q ss_pred             cHHhHHHHHHHHHHcC-------------CCCchHhHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 010739          320 LLADGSRLSSWAIQEG-------------GSSLYGVVH--ERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVL  383 (502)
Q Consensus       320 ~~~~a~~~~~~m~~~~-------------~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li  383 (502)
                      +.+-..+++.......             ..++....|  .-+-..|-..|+.++|++.+++..++  .|+ +..|..--
T Consensus       158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka  235 (517)
T PF12569_consen  158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA  235 (517)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence            7776777776654331             112333334  45566677899999999999998876  576 45566666


Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHcc
Q 010739          384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDR----VAVLQGLRKR  459 (502)
Q Consensus       384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~ll~~~~~~  459 (502)
                      ..+.+.|++.+|.+.++..+..... |...=+-....+.++|++++|.+++......+..|-...+    ...+..+..+
T Consensus       236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a  314 (517)
T PF12569_consen  236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA  314 (517)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999988844 7777777999999999999999999999887764433211    2222223233


Q ss_pred             ccccccHHHHHHHHhhh
Q 010739          460 IQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       460 ~~~~~~~~~a~~~~~~m  476 (502)
                      ....|+...|++.|...
T Consensus       315 ~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  315 YLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHHhhHHHHHHHHHHH
Confidence            33367777777765444

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=2e-06  Score=85.12  Aligned_cols=282  Identities=10%  Similarity=-0.009  Sum_probs=189.7

Q ss_pred             hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC--CCCCCccccccCCCCchHHHHHHHH
Q 010739          169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG--IAYAEGDGEGQQGGPTGYLAWKMMV  246 (502)
Q Consensus       169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~--~~p~~~ty~~~~~~~~~~~~~~~~~  246 (502)
                      .-+..+|...|+..... +.-+..+..-+-.+|...+++++|+++|+...+..  ..-+...|.+        ++|..-.
T Consensus       332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST--------~LWHLq~  402 (638)
T KOG1126|consen  332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYST--------TLWHLQD  402 (638)
T ss_pred             HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHH--------HHHHHHh
Confidence            45677889999885554 33334677778899999999999999999998665  2345566766        7776643


Q ss_pred             hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhc-CcHHhH
Q 010739          247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~-g~~~~a  324 (502)
                      .    -++.++.+-.-.--+-.+.||.++-++|.-. ++.+.|++.|+.-+.  ++| ....|+ .+-.-+.. ..+|.|
T Consensus       403 ~----v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQ--ldp~faYayT-LlGhE~~~~ee~d~a  474 (638)
T KOG1126|consen  403 E----VALSYLAQDLIDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQ--LDPRFAYAYT-LLGHESIATEEFDKA  474 (638)
T ss_pred             h----HHHHHHHHHHHhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhc--cCCccchhhh-hcCChhhhhHHHHhH
Confidence            2    2222222221111233468888999999988 899999887766533  344 455554 23333666 888899


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL-YDIVLAICASQNEGSAVSRLLSRIE  403 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~l~~~m~  403 (502)
                      .+.|+..+.-....-+  .|--+-..|.+.++++.|+-.|++..  .+.|.... ...+-..+-+.|+.++|.++++...
T Consensus       475 ~~~fr~Al~~~~rhYn--AwYGlG~vy~Kqek~e~Ae~~fqkA~--~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  475 MKSFRKALGVDPRHYN--AWYGLGTVYLKQEKLEFAEFHFQKAV--EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             HHHHHhhhcCCchhhH--HHHhhhhheeccchhhHHHHHHHhhh--cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            9988765544333323  66667778889999999999998776  46665443 3334466777889999999998887


Q ss_pred             HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739          404 VMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD-RVAVLQGLRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      ..... |...--.....+...++.++|+..|+++++  +.|+..+ |..+-..|.+    -|+.+.|+.-|.-+.+
T Consensus       551 ~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~----~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  551 HLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKR----LGNTDLALLHFSWALD  619 (638)
T ss_pred             hcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHH----HccchHHHHhhHHHhc
Confidence            76633 444444466667778899999999999875  4566655 4444444544    6777888877655533

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.78  E-value=2.2e-05  Score=79.14  Aligned_cols=291  Identities=11%  Similarity=0.039  Sum_probs=195.9

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCChHH-HHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKENRVDNET-MELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVIS  199 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~  199 (502)
                      ..+...|++ +.|++.++.-.+. .+|... +......+.        +-|+.++|...+..+.+.+- -|..-|..+..
T Consensus        12 ~il~e~g~~-~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~--------kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~   80 (517)
T PF12569_consen   12 SILEEAGDY-EEALEHLEKNEKQ-ILDKLAVLEKRAELLL--------KLGRKEEAEKIYRELIDRNP-DNYDYYRGLEE   80 (517)
T ss_pred             HHHHHCCCH-HHHHHHHHhhhhh-CCCHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHH
Confidence            455778999 8999999775444 366554 444444444        89999999999999998754 35566666666


Q ss_pred             HHHhc-----CcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcH-HHHHHHHHHHHHcCCCCCHhHHH
Q 010739          200 LYWEM-----EKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKY-VDAIKLVIHLRESGLKPEVYSYL  273 (502)
Q Consensus       200 ~~~~~-----g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~ty~  273 (502)
                      +..-.     .+.+...++++++.+.-  |.......        +...++....+ ..+..++..+..+|+++   +|+
T Consensus        81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~r--------l~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~  147 (517)
T PF12569_consen   81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRR--------LPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFS  147 (517)
T ss_pred             HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhH--------hhcccCCHHHHHHHHHHHHHHHHhcCCch---HHH
Confidence            66332     35788899999987665  22211111        33333322233 34455667777777643   445


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHc----C----------CCCchhchHHHHHHH-Hhc-CcHHhHHHHHHHHHHcCCC
Q 010739          274 IALTAVVKELNEFGKALRKLKGYVRA----G----------SIAELDGKNLGLIEK-YQS-DLLADGSRLSSWAIQEGGS  337 (502)
Q Consensus       274 ~li~~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~~~~~~~li~~-~~~-g~~~~a~~~~~~m~~~~~~  337 (502)
                      .+-..|... .+..-..+++.++...    +          -.|....|...++.. |.. |+.++|++..++.+.....
T Consensus       148 ~lk~Ly~d~-~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt  226 (517)
T PF12569_consen  148 NLKPLYKDP-EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT  226 (517)
T ss_pred             HHHHHHcCh-hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            555555555 4555566666665322    1          123333343334444 777 9999999999998888755


Q ss_pred             CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---
Q 010739          338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL---  414 (502)
Q Consensus       338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~---  414 (502)
                      .++  .|..--..|-+.|++++|.+.+++.+.... -|...=+-....+-+.|++++|.+++......+..|-...+   
T Consensus       227 ~~e--ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ  303 (517)
T PF12569_consen  227 LVE--LYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ  303 (517)
T ss_pred             cHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH
Confidence            555  888888889999999999999999886543 26666667778999999999999999888776654443333   


Q ss_pred             -HH----HHHHHHhCCCHHHHHHHHHHHHH
Q 010739          415 -SW----LLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       415 -~~----li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                       .|    .-.+|.+.|++..|++-|....+
T Consensus       304 c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  304 CMWFETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             23    55678899999998877766543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=98.76  E-value=4.2e-06  Score=86.72  Aligned_cols=146  Identities=12%  Similarity=-0.049  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHH
Q 010739          131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERA  210 (502)
Q Consensus       131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A  210 (502)
                      ..|...++...+...-+...+..+-..+.        ..|++++|...|++..+.+ +-+...|..+-..|...|++++|
T Consensus       321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~--------~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eA  391 (553)
T PRK12370        321 IKAKEHAIKATELDHNNPQALGLLGLINT--------IHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEA  391 (553)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            46666666666655335555555544333        5566667777766666542 22345566666666666777777


Q ss_pred             HHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHH
Q 010739          211 VLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKA  289 (502)
Q Consensus       211 ~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a  289 (502)
                      ...+++..+.+  |+...+..       ...+.+...|++++|++.+++..... .|+ ...+..+-.++... |+.++|
T Consensus       392 i~~~~~Al~l~--P~~~~~~~-------~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~-G~~~eA  460 (553)
T PRK12370        392 LQTINECLKLD--PTRAAAGI-------TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLK-GKHELA  460 (553)
T ss_pred             HHHHHHHHhcC--CCChhhHH-------HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhC-CCHHHH
Confidence            76666665544  22110000       02233444566666666666554432 232 22334444444555 566666


Q ss_pred             HHHHHHH
Q 010739          290 LRKLKGY  296 (502)
Q Consensus       290 ~~~~~~m  296 (502)
                      ...+.++
T Consensus       461 ~~~~~~~  467 (553)
T PRK12370        461 RKLTKEI  467 (553)
T ss_pred             HHHHHHh
Confidence            6655554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=5.6e-06  Score=82.05  Aligned_cols=182  Identities=15%  Similarity=0.056  Sum_probs=92.1

Q ss_pred             hCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHH---HHhc-CcH
Q 010739          247 EGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIE---KYQS-DLL  321 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~---~~~~-g~~  321 (502)
                      +++.+.|++.|++-.+  +.| ..++|+.+-+-+... .++|+|...|+.-    +..|...|| +.-.   .|.| +++
T Consensus       434 Qkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~-ee~d~a~~~fr~A----l~~~~rhYn-AwYGlG~vy~Kqek~  505 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIAT-EEFDKAMKSFRKA----LGVDPRHYN-AWYGLGTVYLKQEKL  505 (638)
T ss_pred             hhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhh-HHHHhHHHHHHhh----hcCCchhhH-HHHhhhhheeccchh
Confidence            4555555555554432  233 344555554455555 4555555544332    233444444 2222   2555 666


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      +.|+-.|++.++-.  +.+.+.-..+...+-+.|+.++|++++++.....-+ |..+---....+...++.++|.+.+++
T Consensus       506 e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  506 EFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             hHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence            66666665544332  223344444555556666666666666665533221 222222223334445666666666666


Q ss_pred             HHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          402 IEVMNSLC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       402 m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      +++.-  | +...|..+.+.|.+.|+.+.|+.-|.-|.+..
T Consensus       583 Lk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  583 LKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            66542  3 34444446666666677777766666665544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.75  E-value=5.3e-06  Score=82.57  Aligned_cols=258  Identities=18%  Similarity=0.143  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-----CC-CCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc-
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSR-----GI-AYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES-  263 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-----~~-~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~-  263 (502)
                      ..+...|...|...|+++.|+.+++.-.+.     |. -|.+.+-       ...+...+...+++++|..+|+++..- 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~-------l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM-------LNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            456777999999999999999999877654     20 0110000       000222333359999999999998753 


Q ss_pred             ----C-CCCC-HhHHHHHHHHHHhccccHHHHHHHHHHH--H-Hc--C-CCCchhchHHHHHHHHhc-CcHHhHHHHHHH
Q 010739          264 ----G-LKPE-VYSYLIALTAVVKELNEFGKALRKLKGY--V-RA--G-SIAELDGKNLGLIEKYQS-DLLADGSRLSSW  330 (502)
Q Consensus       264 ----g-~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m--~-~~--g-~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~  330 (502)
                          | ..|. ..|++.|-.+|++. |++++|...++.-  + +.  | ..|++....+.+...|.. +++++|..++..
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK  350 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence                2 2333 35677777889999 7999998887654  1 11  2 234444443345555777 999999999876


Q ss_pred             HHHcC---CCCc---hHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCChhHHHH
Q 010739          331 AIQEG---GSSL---YGVVHERLLAMYICAGRGLEAERQLWEMKLV----GK--EAD-GDLYDIVLAICASQNEGSAVSR  397 (502)
Q Consensus       331 m~~~~---~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p~-~~t~~~li~~~~~~~~~~~a~~  397 (502)
                      ....-   ....   -.-+|+.|-..|.+.|++++|++++++....    +-  .+. ...++.+-..|.+.+..++|.+
T Consensus       351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~  430 (508)
T KOG1840|consen  351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ  430 (508)
T ss_pred             HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence            54422   1111   2357899999999999999999999987543    12  222 4556777789999999999999


Q ss_pred             HHH----HHHHcCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C---CCCCCHHHHHHHHHHH
Q 010739          398 LLS----RIEVMNSL-C-KKKTLSWLLRGYIKGGHINDAAETLTKMLD---L---GLYPEYMDRVAVLQGL  456 (502)
Q Consensus       398 l~~----~m~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~---g~~p~~~t~~~ll~~~  456 (502)
                      +|.    .|+.+|.. | ...+|.-|...|.+.|++++|.++.+....   .   +..|+..........+
T Consensus       431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (508)
T KOG1840|consen  431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADL  501 (508)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHH
Confidence            985    44556642 2 245666799999999999999999887652   1   2456555555444443

>PRK12370 invasion protein regulator; Provisional

Probab=98.75  E-value=1.4e-05  Score=82.81  Aligned_cols=201  Identities=8%  Similarity=-0.017  Sum_probs=97.5

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC-HHHHHHHHHHHH---------hcCcHHHHHHHHHH
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG-FSMIEKVISLYW---------EMEKKERAVLFVKA  216 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~---------~~g~~~~A~~l~~~  216 (502)
                      +...|...+++.......   ..+.+++|..+|++..+.  .|+ ...|..+-.+|.         ..+++++|...+++
T Consensus       255 ~~da~~~~lrg~~~~~~~---~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~  329 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQY---TPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK  329 (553)
T ss_pred             ChHHHHHHHHhHHHHHcc---CHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence            556666666654311111   245677888888887763  443 344554444433         22346667776666


Q ss_pred             HHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHH
Q 010739          217 VLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLK  294 (502)
Q Consensus       217 m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~  294 (502)
                      ..+.+  |+.. .+..        +...+...|++++|...|++..+.  .|+ ...+..+-..+... |+.++|...++
T Consensus       330 Al~ld--P~~~~a~~~--------lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~-G~~~eAi~~~~  396 (553)
T PRK12370        330 ATELD--HNNPQALGL--------LGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMA-GQLEEALQTIN  396 (553)
T ss_pred             HHhcC--CCCHHHHHH--------HHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHH
Confidence            65543  3211 1111        222233356666666666666554  233 34455555555556 56666666666


Q ss_pred             HHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          295 GYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       295 ~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      +..+.  .|+...+...+...+.. |++++|...+++......+. +...+..+-..|...|+.++|...+.++.
T Consensus       397 ~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~-~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        397 ECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD-NPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             HHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc-CHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            65333  22211110011222222 55555655555544332111 22234444455555555555555555543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.73  E-value=5.3e-05  Score=78.35  Aligned_cols=321  Identities=13%  Similarity=0.042  Sum_probs=204.6

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHH----HHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739          131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLV----DMDCVGLKPGFSMIEKVISLYWEMEK  206 (502)
Q Consensus       131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~----~m~~~g~~p~~~~y~~li~~~~~~g~  206 (502)
                      +.|..+.....+.-..|...|-.+-..+         ..++...++.+|.    .|...+-.+-+...|.+-..+...|+
T Consensus       397 d~a~~~l~K~~~~~~~d~~a~l~laql~---------e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~  467 (1018)
T KOG2002|consen  397 DKASNVLGKVLEQTPVDSEAWLELAQLL---------EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN  467 (1018)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHH---------HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence            4555666555555445666776665533         3444444455544    34456666788899999999999999


Q ss_pred             HHHHHHHHHHHHHc---CCCCCCc-cccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010739          207 KERAVLFVKAVLSR---GIAYAEG-DGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTA  278 (502)
Q Consensus       207 ~~~A~~l~~~m~~~---~~~p~~~-ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~  278 (502)
                      ++.|...|++....   ...+|.. +-+       -.+-+|..+    -++.+.|.++|......  .|+-++--.=+.+
T Consensus       468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~-------lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~  538 (1018)
T KOG2002|consen  468 IEKALEHFKSALGKLLEVANKDEGKSTN-------LTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC  538 (1018)
T ss_pred             hHHHHHHHHHHhhhhhhhcCccccccch-------hHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence            99999999998766   2333332 010       013455544    37889999999998876  4554432222223


Q ss_pred             HHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHH-HHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH--
Q 010739          279 VVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIE-KYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC--  353 (502)
Q Consensus       279 ~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~-~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~--  353 (502)
                      .++..+...+|...+++. .-..-.|+..+    ++. .|.+ ..+.-|.+-|+.........+|.++.-+|-+.|.+  
T Consensus       539 ma~~k~~~~ea~~~lk~~l~~d~~np~ars----l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l  614 (1018)
T KOG2002|consen  539 MARDKNNLYEASLLLKDALNIDSSNPNARS----LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL  614 (1018)
T ss_pred             HHHhccCcHHHHHHHHHHHhcccCCcHHHH----HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence            333325677887777766 33444566654    444 5666 77777888776666655444563443344443332  


Q ss_pred             ----------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739          354 ----------AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK  423 (502)
Q Consensus       354 ----------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~  423 (502)
                                .+..++|+.+|.+..... .-|.+.-|-+=-.++..|+++.|..+|...++... -+..+|--+-++|..
T Consensus       615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e  692 (1018)
T KOG2002|consen  615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE  692 (1018)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence                      245667888887766432 22455556666677888889999999988877664 244566668888888


Q ss_pred             CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          424 GGHINDAAETLTKMLDLG-LYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       424 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      .|++-.|+++|+.....- -.-+......|-.++..    .|.+.++.+.+......
T Consensus       693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~----~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE----AGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHh
Confidence            899999999888866543 34566667777777766    67777777765554443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.66  E-value=0.00023  Score=73.25  Aligned_cols=331  Identities=16%  Similarity=0.108  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +...-..+++ |+. +.|.+++.+..+........|-.|-.++-        +.|+.+++...+--.--. -+-|...|-
T Consensus       143 l~eAN~lfar-g~~-eeA~~i~~EvIkqdp~~~~ay~tL~~IyE--------qrGd~eK~l~~~llAAHL-~p~d~e~W~  211 (895)
T KOG2076|consen  143 LGEANNLFAR-GDL-EEAEEILMEVIKQDPRNPIAYYTLGEIYE--------QRGDIEKALNFWLLAAHL-NPKDYELWK  211 (895)
T ss_pred             HHHHHHHHHh-CCH-HHHHHHHHHHHHhCccchhhHHHHHHHHH--------HcccHHHHHHHHHHHHhc-CCCChHHHH
Confidence            4444456666 999 89999999999988567888998888776        889999998866443332 344678899


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH----HhCcHHHHHHHHHHHHHcCCCCCHhH
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM----VEGKYVDAIKLVIHLRESGLKPEVYS  271 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t  271 (502)
                      .+-....+.|++++|.-.|.+..+..  |+..-           ++|.-.    +.|+...|.+.|.++....-..|..-
T Consensus       212 ~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~-----------~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er  278 (895)
T KOG2076|consen  212 RLADLSEQLGNINQARYCYSRAIQAN--PSNWE-----------LIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER  278 (895)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcC--CcchH-----------HHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence            99999999999999999999988776  32211           333332    25999999999999987633223332


Q ss_pred             HH----HHHHHHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC-------
Q 010739          272 YL----IALTAVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS-------  338 (502)
Q Consensus       272 y~----~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~-------  338 (502)
                      +.    .+++.+... ++.+.|++.++.... .+-.-+...++ .+...|.+ ..++.|......+......+       
T Consensus       279 ~~d~i~~~~~~~~~~-~~~e~a~~~le~~~s~~~~~~~~ed~n-i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~  356 (895)
T KOG2076|consen  279 IEDLIRRVAHYFITH-NERERAAKALEGALSKEKDEASLEDLN-ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT  356 (895)
T ss_pred             HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhccccccccHHH-HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence            33    345556666 667999998888844 33344555666 47788888 88888888776666511000       


Q ss_pred             --------------chHhHHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 010739          339 --------------LYGVVHE----RLLAMYICAGRGLEAERQLWEMKLVGKEA--DGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       339 --------------~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                                    .+..+|+    -+.-++......+....+..-..+..+.|  +...|--+..++...|.+..|..+
T Consensus       357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~  436 (895)
T KOG2076|consen  357 DERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL  436 (895)
T ss_pred             hhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence                          0111121    23344555555555666666666666443  566788888999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~  477 (502)
                      +..+......-+...|--+-.+|-..|..++|.+.|+..+..  .|+-.--.+=+..+..   +.|+.++|.+.+..+.
T Consensus       437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~---~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQ---QLGNHEKALETLEQII  510 (895)
T ss_pred             HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHH---hcCCHHHHHHHHhccc
Confidence            999887665556777878999999999999999999998764  4554433333333322   2688999999988864

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=0.00031  Score=67.07  Aligned_cols=183  Identities=13%  Similarity=0.068  Sum_probs=97.2

Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~  322 (502)
                      ...++.++|...|++-.+.  .|. ...|+.+-+-|... +....|.+-++.-++-. +.|-..|- .|-.+|.- +...
T Consensus       341 Slr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEm-KNt~AAi~sYRrAvdi~-p~DyRAWY-GLGQaYeim~Mh~  415 (559)
T KOG1155|consen  341 SLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEM-KNTHAAIESYRRAVDIN-PRDYRAWY-GLGQAYEIMKMHF  415 (559)
T ss_pred             HHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHh-cccHHHHHHHHHHHhcC-chhHHHHh-hhhHHHHHhcchH
Confidence            3346666677666665543  333 24455555666666 55666655555443321 11223332 46666666 6666


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      -|+-.|++..+  ..|.|...|.+|-.+|.+.++.++|...|.+....|-. +...|..+-..+-+.++.++|.+.++.-
T Consensus       416 YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~  492 (559)
T KOG1155|consen  416 YALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKY  492 (559)
T ss_pred             HHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            66666655433  23334456666666666666666776666666654422 4455666666666666666666655332


Q ss_pred             ----HHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739          403 ----EVMNSLCK--KKTLSWLLRGYIKGGHINDAAETLT  435 (502)
Q Consensus       403 ----~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~  435 (502)
                          ...|..-+  ...--+|-.-+.+.+++++|.....
T Consensus       493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~  531 (559)
T KOG1155|consen  493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT  531 (559)
T ss_pred             HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence                22232211  1122224455556666666654433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=2.1e-05  Score=74.35  Aligned_cols=271  Identities=8%  Similarity=-0.004  Sum_probs=176.3

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE--MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM  245 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~  245 (502)
                      +.|+++.|++++.-..+..-+.-...-|.|-..+.-  -.++.+|.+.-+..      .+..-||.....-   --....
T Consensus       431 k~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a------ln~dryn~~a~~n---kgn~~f  501 (840)
T KOG2003|consen  431 KNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA------LNIDRYNAAALTN---KGNIAF  501 (840)
T ss_pred             hccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH------hcccccCHHHhhc---CCceee
Confidence            677788887777777665433222223322222222  23455555544433      3334444300000   001122


Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a  324 (502)
                      .+|++++|.+.|++-....-......||+=+.+-..  |.+++|++.|-.+...-. -+..+.- -+.+.|.. .+...|
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~--~~ldeald~f~klh~il~-nn~evl~-qianiye~led~aqa  577 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEAL--GNLDEALDCFLKLHAILL-NNAEVLV-QIANIYELLEDPAQA  577 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHh--cCHHHHHHHHHHHHHHHH-hhHHHHH-HHHHHHHHhhCHHHH
Confidence            369999999999998877544455566655544333  579999998876622111 1222211 24555777 888888


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      .+++.  ......+.|.....-|-.-|-+.|+-.+|++.+-+--. =+..+..|...|-..|....-++.+...|+....
T Consensus       578 ie~~~--q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal  654 (840)
T KOG2003|consen  578 IELLM--QANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL  654 (840)
T ss_pred             HHHHH--HhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            88773  33445566778999999999999999999987654321 2455778888888888888888999999987654


Q ss_pred             cCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739          405 MNSLCKKKTLSWLLRGYI-KGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR  457 (502)
Q Consensus       405 ~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~  457 (502)
                        ++|+..-|..||..|. +.|++.+|++++++.-+ .+.-|..+...|+.-|.
T Consensus       655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~  705 (840)
T KOG2003|consen  655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhc
Confidence              4799999999887655 67999999999998644 56677778887877774

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.55  E-value=0.00024  Score=73.68  Aligned_cols=242  Identities=10%  Similarity=-0.024  Sum_probs=132.6

Q ss_pred             CcHHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHc---CCCCchh-------chHHHHH
Q 010739          248 GKYVDAIKLVIH----LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRA---GSIAELD-------GKNLGLI  313 (502)
Q Consensus       248 g~~~~a~~~~~~----m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~-------~~~~~li  313 (502)
                      ++...++..|..    |...+-.+.....|.+-...... |.+++|...|.+-...   -..+|..       -||  +-
T Consensus       427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~-g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN--la  503 (1018)
T KOG2002|consen  427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL-GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN--LA  503 (1018)
T ss_pred             cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh-cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH--HH
Confidence            555555555443    34445557777777777777777 6788887777666322   1222221       233  33


Q ss_pred             HHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-C------------------C-
Q 010739          314 EKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-G------------------K-  372 (502)
Q Consensus       314 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g------------------~-  372 (502)
                      ..... ++.+.|.+.+..+.+......|  .|--+....-..+...+|...+.+..+. .                  . 
T Consensus       504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId--~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~  581 (1018)
T KOG2002|consen  504 RLLEELHDTEVAEEMYKSILKEHPGYID--AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK  581 (1018)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHCchhHH--HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence            33444 6677777777665555443333  3333331111234444555554443321 1                  1 


Q ss_pred             ---------------CCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          373 ---------------EADGDLYDIVLAICAS------------QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       373 ---------------~p~~~t~~~li~~~~~------------~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                                     .+|++...+|=..|..            .+..+.|.++|....... .-|...-|-+--.++..|
T Consensus       582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg  660 (1018)
T KOG2002|consen  582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG  660 (1018)
T ss_pred             ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc
Confidence                           1333333222221211            112234555555554443 224555555777788899


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC------chhHHHHHHHhhcchhhh
Q 010739          426 HINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL------IGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       426 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~------~~~~li~~y~~~g~~~~~  499 (502)
                      ++.+|..+|.+.++.+. -+.-+|..+-..|..    .|++-.|++.|+......+      +...|-.+|-++|.+-.+
T Consensus       661 ~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e----~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea  735 (1018)
T KOG2002|consen  661 RFSEARDIFSQVREATS-DFEDVWLNLAHCYVE----QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA  735 (1018)
T ss_pred             CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH----HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence            99999999999888764 233355666666765    5778888877766544332      556677777777776554


Q ss_pred             h
Q 010739          500 K  500 (502)
Q Consensus       500 ~  500 (502)
                      +
T Consensus       736 k  736 (1018)
T KOG2002|consen  736 K  736 (1018)
T ss_pred             H
Confidence            3

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.53  E-value=3.4e-05  Score=76.94  Aligned_cols=233  Identities=16%  Similarity=0.100  Sum_probs=155.6

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHc-----C-CCCCHhHH-HHHHHHHHhccccHHHHHHHHHHHH---HcCCCCchhchH
Q 010739          240 LAWKMMVEGKYVDAIKLVIHLRES-----G-LKPEVYSY-LIALTAVVKELNEFGKALRKLKGYV---RAGSIAELDGKN  309 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~ty-~~li~~~~~~~~~~~~a~~~~~~m~---~~g~~p~~~~~~  309 (502)
                      +...+...|+++.|+.++++-.+.     | ..|...+. +.+-..|... +++++|..+|+++.   +..+-++.....
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h~~va  283 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDHPAVA  283 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            445555579999999999976554     3 23333332 3345566666 79999999999883   222223332222


Q ss_pred             HHHHH---HHhc-CcHHhHHHHHHHHHHc-----CCCCchHh-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC-
Q 010739          310 LGLIE---KYQS-DLLADGSRLSSWAIQE-----GGSSLYGV-VHERLLAMYICAGRGLEAERQLWEMKLV---GKEAD-  375 (502)
Q Consensus       310 ~~li~---~~~~-g~~~~a~~~~~~m~~~-----~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~-  375 (502)
                      +.+++   .|.+ |++++|...+++..+-     +...+++. -++.+...++..+++++|..++....+.   -..++ 
T Consensus       284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~  363 (508)
T KOG1840|consen  284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN  363 (508)
T ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence            23444   4888 9999999988765432     22333332 4566777788899999999998875432   22333 


Q ss_pred             ---HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCC
Q 010739          376 ---GDLYDIVLAICASQNEGSAVSRLLSRIEVM----NS--LC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDL--GLY  443 (502)
Q Consensus       376 ---~~t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~  443 (502)
                         ..+++.|-..+-+.|++++|.++++.....    +.  .+ ....++.|-..|.+.++.++|.++|.+-..-  -+.
T Consensus       364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g  443 (508)
T KOG1840|consen  364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG  443 (508)
T ss_pred             hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence               367899999999999999999999755322    11  22 2456677888999999999999999875432  133


Q ss_pred             CCH----HHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739          444 PEY----MDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       444 p~~----~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~  477 (502)
                      |+.    .+|..|...|..    -|+.+.|.++.+...
T Consensus       444 ~~~~~~~~~~~nL~~~Y~~----~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  444 PDHPDVTYTYLNLAALYRA----QGNYEAAEELEEKVL  477 (508)
T ss_pred             CCCCchHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Confidence            444    345556666655    899999999877663

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=0.00042  Score=66.22  Aligned_cols=284  Identities=10%  Similarity=-0.001  Sum_probs=182.8

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC-CC-CCCccccccCCCCchHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG-IA-YAEGDGEGQQGGPTGYLAWKMM  245 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~-~~-p~~~ty~~~~~~~~~~~~~~~~  245 (502)
                      .-.+.+++..-.+.....|++-+...-+-.-.+.-...|+++|+.+|+++...+ .. -|..||+.        +++.--
T Consensus       239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN--------~LYv~~  310 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSN--------VLYVKN  310 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhH--------HHHHHh
Confidence            344677777777777777776554444444445556788999999999988764 11 13344433        222111


Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a  324 (502)
                        .  ...+.++.+-...--+--+.|..++-+-|+-. ++.++|...|+.-++.  .|......+.+-.-|.. .+...|
T Consensus       311 --~--~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr-~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AA  383 (559)
T KOG1155|consen  311 --D--KSKLSYLAQNVSNIDKYRPETCCIIANYYSLR-SEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAA  383 (559)
T ss_pred             --h--hHHHHHHHHHHHHhccCCccceeeehhHHHHH-HhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHH
Confidence              1  11222222222221122334555666667666 6889998888776554  34444433334444888 888888


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIE  403 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~  403 (502)
                      .+-+++.++-  .+.|-..|-.|-.+|.-.+...=|+-.|++..+  ++| |...|.+|=.+|.+.++.++|.+-+....
T Consensus       384 i~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai  459 (559)
T KOG1155|consen  384 IESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI  459 (559)
T ss_pred             HHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            8888776654  344556888889999888888888888887764  566 66778888889999999999999998887


Q ss_pred             HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHH-HccccccccHHHHHHHHhh
Q 010739          404 VMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD----LGLYPE-YMDRVAVLQGL-RKRIQQSGNVEAYLNLCKR  475 (502)
Q Consensus       404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~-~~~~~~~~~~~~a~~~~~~  475 (502)
                      ..|-. +...+..|-+.|-+-++.++|...|++-++    .|..-+ ..--...+.-+ .+    .++.++|......
T Consensus       460 ~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k----~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  460 LLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK----MKDFDEASYYATL  532 (559)
T ss_pred             hcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh----hcchHHHHHHHHH
Confidence            77743 678888899999999999999888877654    343333 22222222222 34    5677776665433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.47  E-value=0.0021  Score=64.15  Aligned_cols=346  Identities=11%  Similarity=-0.022  Sum_probs=212.6

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHH----HhhCCCCCCHHHHHHH
Q 010739          122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVD----MDCVGLKPGFSMIEKV  197 (502)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~y~~l  197 (502)
                      +|++...+ +.|..++....+.-..|...|-+-.. +       .+..|+++....++++    +...|+..|..-|-.=
T Consensus       415 AlarLetY-enAkkvLNkaRe~iptd~~IWitaa~-L-------EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e  485 (913)
T KOG0495|consen  415 ALARLETY-ENAKKVLNKAREIIPTDREIWITAAK-L-------EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE  485 (913)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhhCCCChhHHHHHHH-H-------HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence            44444445 45555555554444335555543322 1       1255666666555543    3345555565555555


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCCCCCC--ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010739          198 ISLYWEMEKKERAVLFVKAVLSRGIAYAE--GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIA  275 (502)
Q Consensus       198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l  275 (502)
                      -..|-+.|..-.+..+......-|+.-..  .|+..        ....+.+.+.++-|..+|....+. +.-+...|.-.
T Consensus       486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~--------da~~~~k~~~~~carAVya~alqv-fp~k~slWlra  556 (913)
T KOG0495|consen  486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLD--------DAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRA  556 (913)
T ss_pred             HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhh--------hHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHH
Confidence            55555556555555555555544433111  12222        334444456677777777766543 33334445444


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739          276 LTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA  354 (502)
Q Consensus       276 i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  354 (502)
                      ...=-.. |..++-..+|.+.+..  .|-...+.......+-. |++..|..++....+......  ..|-+-+.--..+
T Consensus       557 ~~~ek~h-gt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse--eiwlaavKle~en  631 (913)
T KOG0495|consen  557 AMFEKSH-GTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE--EIWLAAVKLEFEN  631 (913)
T ss_pred             HHHHHhc-CcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH--HHHHHHHHHhhcc
Confidence            4433334 6778877777777443  35555554223333555 999999999988766654443  4898888889999


Q ss_pred             CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHH
Q 010739          355 GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAET  433 (502)
Q Consensus       355 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l  433 (502)
                      .++++|..+|.+...  ..|+...|.--+..-...++.++|.+++++..+.  -|+ ...|-.+-+.+-+.++++.|.+.
T Consensus       632 ~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  632 DELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             ccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999999998775  5677777777666667778999999999665432  344 33455566677788888888887


Q ss_pred             HHHHHHCCC--CCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc----CCchhHHHHHHHhhcchhhhhc
Q 010739          434 LTKMLDLGL--YPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT----SLIGPCLVYLYIKKYKLWIIKM  501 (502)
Q Consensus       434 ~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~li~~y~~~g~~~~~~~  501 (502)
                      |..    |+  -|+..-.-.++.-+-.   ..|.+-.|..+++...-.    ..++-..|.+=.|.|+.+.++.
T Consensus       708 Y~~----G~k~cP~~ipLWllLakleE---k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~  774 (913)
T KOG0495|consen  708 YLQ----GTKKCPNSIPLWLLLAKLEE---KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL  774 (913)
T ss_pred             HHh----ccccCCCCchHHHHHHHHHH---HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence            765    53  3776666666666532   156777787777766322    2256678888888888887754

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.44  E-value=3.5e-07  Score=55.76  Aligned_cols=35  Identities=34%  Similarity=0.192  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG  376 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  376 (502)
                      ++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999973

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=0.002  Score=61.89  Aligned_cols=323  Identities=9%  Similarity=-0.049  Sum_probs=158.8

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 010739          124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE  203 (502)
Q Consensus       124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~  203 (502)
                      -..|+. ..|.++|+.-.+- .|+...|++.|+-=.        +-+.++.|..+++...-  +.|++.+|-.-.+.=-+
T Consensus       152 E~LgNi-~gaRqiferW~~w-~P~eqaW~sfI~fEl--------RykeieraR~IYerfV~--~HP~v~~wikyarFE~k  219 (677)
T KOG1915|consen  152 EMLGNI-AGARQIFERWMEW-EPDEQAWLSFIKFEL--------RYKEIERARSIYERFVL--VHPKVSNWIKYARFEEK  219 (677)
T ss_pred             HHhccc-HHHHHHHHHHHcC-CCcHHHHHHHHHHHH--------HhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHh
Confidence            334555 4666666544332 256666666666333        55666666666665543  34666666555555556


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCC--HhHHHHHHH
Q 010739          204 MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPE--VYSYLIALT  277 (502)
Q Consensus       204 ~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~--~~ty~~li~  277 (502)
                      +|....|.++|+...+.=-. |.         ....+..++..    +..++.|.-+|+--... ++-+  ...|.....
T Consensus       220 ~g~~~~aR~VyerAie~~~~-d~---------~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~  288 (677)
T KOG1915|consen  220 HGNVALARSVYERAIEFLGD-DE---------EAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTA  288 (677)
T ss_pred             cCcHHHHHHHHHHHHHHhhh-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHH
Confidence            66666666666544322100 00         00001111111    24555555555544433 2111  122222221


Q ss_pred             HHHhcc--ccHHHHHHH-----HHHHH-HcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          278 AVVKEL--NEFGKALRK-----LKGYV-RAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       278 ~~~~~~--~~~~~a~~~-----~~~m~-~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      -=-+-|  ...++++--     +++++ +.+.  |-.++- -.+..-.. |+.+...++|++.+.+-.|...-..|...|
T Consensus       289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~--nYDsWf-dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYI  365 (677)
T KOG1915|consen  289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY--NYDSWF-DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYI  365 (677)
T ss_pred             HHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC--CchHHH-HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHH
Confidence            111111  223333221     22221 1221  222222 34555556 888888888888776654432222333222


Q ss_pred             HH---HH-----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010739          349 AM---YI-----CAGRGLEAERQLWEMKLVGKEADGDLYDIVLAIC----ASQNEGSAVSRLLSRIEVMNSLCKKKTLSW  416 (502)
Q Consensus       349 ~~---~~-----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~----~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~  416 (502)
                      --   |+     ...+++.+.++|....+ =++-...||.-+=-.|    .++.++..|.+++....  |.-|-..+|-.
T Consensus       366 YLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~  442 (677)
T KOG1915|consen  366 YLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKG  442 (677)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHH
Confidence            21   11     25677777777777665 2222344554443322    34566677777776544  55577777777


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          417 LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       417 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      .|..=.+.+++|.+..++++.++-+- -|..+|.-.-.-=..    -|+.+.|..+|....+..
T Consensus       443 YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~----LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  443 YIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETS----LGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHH----hhhHHHHHHHHHHHhcCc
Confidence            77777777777777777777766441 133333322222122    466677777766665444

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.41  E-value=4.4e-07  Score=55.29  Aligned_cols=35  Identities=31%  Similarity=0.565  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739          412 KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY  446 (502)
Q Consensus       412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  446 (502)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999983

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.39  E-value=4.8e-05  Score=69.23  Aligned_cols=227  Identities=12%  Similarity=-0.013  Sum_probs=170.8

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739          240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-  318 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-  318 (502)
                      +-..+++-|.+.+|.+.|+.-...  .|-+.||..+-.+|.+. .+.+.|+.++.+-++.  .|..+||-.-+-+.+.. 
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRI-DQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence            344555679999999999887765  67777888899999999 8999999988776433  57777775555666888 


Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      +..++|.+++++..+.....  +....++-.+|...++++-|+..++++.+.|+. +...|+.+--+|.-.+.+|.+..-
T Consensus       304 ~~~~~a~~lYk~vlk~~~~n--vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPIN--VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCcc--ceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            99999999999877665433  336666777888899999999999999999986 456677776777778899998888


Q ss_pred             HHHHHHcCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          399 LSRIEVMNSLCKK--KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       399 ~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      |+.....--.|+.  ++|.-+-...+-.|++..|.+.|+-.+...-. +...++.|----.+    .|++++|..+++..
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r----~G~i~~Arsll~~A  455 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAAR----SGDILGARSLLNAA  455 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhh----cCchHHHHHHHHHh
Confidence            8776665555554  34555666677889999999999987766532 33445444333234    69999999998776


Q ss_pred             hhc
Q 010739          477 SDT  479 (502)
Q Consensus       477 ~~~  479 (502)
                      .+.
T Consensus       456 ~s~  458 (478)
T KOG1129|consen  456 KSV  458 (478)
T ss_pred             hhh
Confidence            543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.36  E-value=4.9e-05  Score=69.21  Aligned_cols=237  Identities=12%  Similarity=-0.003  Sum_probs=175.1

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV  269 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~  269 (502)
                      |-.=-+-+-++|.+.|.+.+|++.|+.-.+..  |-..||-.        +...+..-.+++.|+.+|.+-.+.  .|-.
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfll--------LskvY~ridQP~~AL~~~~~gld~--fP~~  289 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLL--------LSKVYQRIDQPERALLVIGEGLDS--FPFD  289 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHH--------HHHHHHHhccHHHHHHHHhhhhhc--CCch
Confidence            33334668899999999999999998877665  33344433        666677779999999999987754  6777


Q ss_pred             hHHHH-HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739          270 YSYLI-ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL  347 (502)
Q Consensus       270 ~ty~~-li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  347 (502)
                      +||.. .-+.+-.. ++.++|.++++...+.. ..++.... ++-..|-- ++.+-|++.++++.+.|...+.  .|+.+
T Consensus       290 VT~l~g~ARi~eam-~~~~~a~~lYk~vlk~~-~~nvEaiA-cia~~yfY~~~PE~AlryYRRiLqmG~~spe--Lf~Ni  364 (478)
T KOG1129|consen  290 VTYLLGQARIHEAM-EQQEDALQLYKLVLKLH-PINVEAIA-CIAVGYFYDNNPEMALRYYRRILQMGAQSPE--LFCNI  364 (478)
T ss_pred             hhhhhhhHHHHHHH-HhHHHHHHHHHHHHhcC-Cccceeee-eeeeccccCCChHHHHHHHHHHHHhcCCChH--HHhhH
Confidence            77654 33344444 68899999998874431 11222222 35555666 9999999999999999987766  88888


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          348 LAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                      --+|...+++|-++.-|++....--.|+.  ..|-.+=......|++..|.+-|+.....+ .-+...+|-|-..-.+.|
T Consensus       365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G  443 (478)
T KOG1129|consen  365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSG  443 (478)
T ss_pred             HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcC
Confidence            88888899999999999988765555543  245445555567799999999998877665 336778888888889999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCH
Q 010739          426 HINDAAETLTKMLDLGLYPEY  446 (502)
Q Consensus       426 ~~~~A~~l~~~m~~~g~~p~~  446 (502)
                      ++++|..++....+  +.|+.
T Consensus       444 ~i~~Arsll~~A~s--~~P~m  462 (478)
T KOG1129|consen  444 DILGARSLLNAAKS--VMPDM  462 (478)
T ss_pred             chHHHHHHHHHhhh--hCccc
Confidence            99999999998654  34543

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.32  E-value=8.5e-07  Score=53.65  Aligned_cols=33  Identities=6%  Similarity=0.127  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739          192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY  224 (502)
Q Consensus       192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p  224 (502)
                      .+||++|++|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999987

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.27  E-value=1.3e-06  Score=52.80  Aligned_cols=33  Identities=27%  Similarity=0.116  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA  374 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  374 (502)
                      .+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            488999999999999999999999999888887

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.25  E-value=0.0058  Score=59.74  Aligned_cols=305  Identities=11%  Similarity=0.009  Sum_probs=134.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      |..+-..+...|+. +.+...+....+..  .++...-.. +.+.+..      ..|++++|...+++..+. .+.|...
T Consensus         9 ~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~------~~g~~~~A~~~~~~~l~~-~P~~~~a   79 (355)
T cd05804           9 HAAAALLLLLGGER-PAAAAKAAAAAQALAARATERERAH-VEALSAW------IAGDLPKALALLEQLLDD-YPRDLLA   79 (355)
T ss_pred             HHHHHHHHHhcCCc-chHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH------HcCCHHHHHHHHHHHHHH-CCCcHHH
Confidence            34444555555666 56666665555443  223222211 1222210      568888888888887664 2334434


Q ss_pred             HHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739          194 IEKVISLYWE----MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV  269 (502)
Q Consensus       194 y~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~  269 (502)
                      ++. ...+..    .+..+.+.+.++.  .....|+...+.       ..+...+...|++++|.+.+++..+.. +.+.
T Consensus        80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~-------~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~  148 (355)
T cd05804          80 LKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLL-------GMLAFGLEEAGQYDRAEEAARRALELN-PDDA  148 (355)
T ss_pred             HHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence            442 222222    3333444443332  111111110000       002223344566677766666666542 2223


Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHcCC-CCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGYVRAGS-IAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      ..+..+-..+... |++++|...+.+.....- .|+..                                  ...|..+.
T Consensus       149 ~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~~~----------------------------------~~~~~~la  193 (355)
T cd05804         149 WAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSMLR----------------------------------GHNWWHLA  193 (355)
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcchh----------------------------------HHHHHHHH
Confidence            4445555555555 566666666555432211 11111                                  11333444


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH--HHHHHHcCCCCCHHHHH--HHHHH
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGK-EADGDLY-D--IVLAICASQNEGSAVSRL--LSRIEVMNSLCKKKTLS--WLLRG  420 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~li~~~~~~~~~~~a~~l--~~~m~~~~~~p~~~~~~--~li~~  420 (502)
                      ..+...|++++|..++++...... .+..... +  .++.-+...|....+.+.  +..............+.  ....+
T Consensus       194 ~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~  273 (355)
T cd05804         194 LFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALA  273 (355)
T ss_pred             HHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            555556666666666665532211 1111111 1  222222333333222222  11111000000111222  36667


Q ss_pred             HHhCCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739          421 YIKGGHINDAAETLTKMLDLGLY------PEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       421 ~~~~g~~~~A~~l~~~m~~~g~~------p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~  477 (502)
                      +...|+.++|..+++.+......      ....+-..++.+...  ...|+.++|...+....
T Consensus       274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~--~~~g~~~~A~~~L~~al  334 (355)
T cd05804         274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA--FAEGNYATALELLGPVR  334 (355)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH--HHcCCHHHHHHHHHHHH
Confidence            77788888888888887653322      111222334444320  11577888877766553

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.25  E-value=0.004  Score=62.15  Aligned_cols=289  Identities=11%  Similarity=0.024  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC----------
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV----------  185 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~----------  185 (502)
                      |..+-..|-.+|.. +.|..+|+...+..-+   +-+-|-...|.|...-. +..+++.|..+++.....          
T Consensus       390 w~~faklYe~~~~l-~~aRvifeka~~V~y~---~v~dLa~vw~~waemEl-rh~~~~~Al~lm~~A~~vP~~~~~~~yd  464 (835)
T KOG2047|consen  390 WVEFAKLYENNGDL-DDARVIFEKATKVPYK---TVEDLAEVWCAWAEMEL-RHENFEAALKLMRRATHVPTNPELEYYD  464 (835)
T ss_pred             HHHHHHHHHhcCcH-HHHHHHHHHhhcCCcc---chHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence            77888888899999 8999999988766522   23444556777665544 788899999988765332          


Q ss_pred             -CCCC------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCCccccccCCCCchHHHHHHHH----hCcHHHH
Q 010739          186 -GLKP------GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIA-YAEGDGEGQQGGPTGYLAWKMMV----EGKYVDA  253 (502)
Q Consensus       186 -g~~p------~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a  253 (502)
                       +.++      +...|...++.--..|-++....+++.+.+..+. |.              ++.|+..    +.-++++
T Consensus       465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--------------ii~NyAmfLEeh~yfees  530 (835)
T KOG2047|consen  465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--------------IIINYAMFLEEHKYFEES  530 (835)
T ss_pred             CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--------------HHHHHHHHHHhhHHHHHH
Confidence             1112      2344555566666678889999999999887743 33              4555544    4667888


Q ss_pred             HHHHHHHHHcCCCCCH-hHHHHHHHHHHhc-c-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc--CcHHhHHHH
Q 010739          254 IKLVIHLRESGLKPEV-YSYLIALTAVVKE-L-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS--DLLADGSRL  327 (502)
Q Consensus       254 ~~~~~~m~~~g~~p~~-~ty~~li~~~~~~-~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~--g~~~~a~~~  327 (502)
                      .++|++=...=--|+. ..|++-+.-+.+. | .+++.|..+|++..+ |+.|...-+ +.|+-+ +..  |....|..+
T Consensus       531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt-iyLlYA~lEEe~GLar~amsi  608 (835)
T KOG2047|consen  531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT-IYLLYAKLEEEHGLARHAMSI  608 (835)
T ss_pred             HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH-HHHHHHHHHHHhhHHHHHHHH
Confidence            8888754433223444 4566666655554 3 689999999999987 777654432 133333 333  888899999


Q ss_pred             HHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHH
Q 010739          328 SSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL---AICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       328 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li---~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      +++....-.+..-...||+.|.--+..--+.....+|++..+.  -||...-...|   +.=++.|.++.|..++..-.+
T Consensus       609 yerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq  686 (835)
T KOG2047|consen  609 YERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ  686 (835)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence            9886554444434558999988777766666677788877764  66665544444   466788999999999865443


Q ss_pred             c-CCCCCHHHHHHHHHHHHhCCCH
Q 010739          405 M-NSLCKKKTLSWLLRGYIKGGHI  427 (502)
Q Consensus       405 ~-~~~p~~~~~~~li~~~~~~g~~  427 (502)
                      . ....+...|.+.=.-=.++|+-
T Consensus       687 ~~dPr~~~~fW~twk~FEvrHGne  710 (835)
T KOG2047|consen  687 ICDPRVTTEFWDTWKEFEVRHGNE  710 (835)
T ss_pred             cCCCcCChHHHHHHHHHHHhcCCH
Confidence            3 3333555666655555778883

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.20  E-value=0.0013  Score=62.31  Aligned_cols=223  Identities=9%  Similarity=-0.118  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHcCC--CC--hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739          131 WCALEVFEWLKKENR--VD--NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK  206 (502)
Q Consensus       131 ~~a~~~~~~m~~~~~--~~--~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~  206 (502)
                      +.++.-+..+.....  |+  ...|..+-..+.        ..|+.++|...|++..+.. +.+...|+.+-..|...|+
T Consensus        43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~--------~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~  113 (296)
T PRK11189         43 EVILARLNQILASRDLTDEERAQLHYERGVLYD--------SLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN  113 (296)
T ss_pred             HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence            567777777775542  21  234554444444        7899999999999988753 3367899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc
Q 010739          207 KERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE  285 (502)
Q Consensus       207 ~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~  285 (502)
                      +++|...|+...+.+  |+. ..|..        ....+...|++++|++.|+...+.  .|+.............. ++
T Consensus       114 ~~~A~~~~~~Al~l~--P~~~~a~~~--------lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~-~~  180 (296)
T PRK11189        114 FDAAYEAFDSVLELD--PTYNYAYLN--------RGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESK-LD  180 (296)
T ss_pred             HHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHcc-CC
Confidence            999999999988654  442 11211        333344569999999999988765  45443222222222333 67


Q ss_pred             HHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcC-----CCCchHhHHHHHHHHHHHcCChHHH
Q 010739          286 FGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEG-----GSSLYGVVHERLLAMYICAGRGLEA  360 (502)
Q Consensus       286 ~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A  360 (502)
                      .++|...+.+.... ..|+..  ...+...+ .|+...+ +.++.+....     ..+.....|..+-..+.+.|+.++|
T Consensus       181 ~~~A~~~l~~~~~~-~~~~~~--~~~~~~~~-lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A  255 (296)
T PRK11189        181 PKQAKENLKQRYEK-LDKEQW--GWNIVEFY-LGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA  255 (296)
T ss_pred             HHHHHHHHHHHHhh-CCcccc--HHHHHHHH-ccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            99999988665322 233322  11233333 2444433 3444433221     1122334788888899999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHH
Q 010739          361 ERQLWEMKLVGKEADGDLYDI  381 (502)
Q Consensus       361 ~~l~~~m~~~g~~p~~~t~~~  381 (502)
                      ...|++..+.. .||.+-+..
T Consensus       256 ~~~~~~Al~~~-~~~~~e~~~  275 (296)
T PRK11189        256 AALFKLALANN-VYNFVEHRY  275 (296)
T ss_pred             HHHHHHHHHhC-CchHHHHHH
Confidence            99999887644 234444433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.002  Score=58.26  Aligned_cols=287  Identities=14%  Similarity=0.088  Sum_probs=135.3

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      +++..++..+.+..++ ..|++++..-.++...+....+.+-.++.        ...++..|...++++-.  ..|...-
T Consensus        11 Geftaviy~lI~d~ry-~DaI~~l~s~~Er~p~~rAgLSlLgyCYY--------~~Q~f~~AA~CYeQL~q--l~P~~~q   79 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARY-ADAIQLLGSELERSPRSRAGLSLLGYCYY--------RLQEFALAAECYEQLGQ--LHPELEQ   79 (459)
T ss_pred             CchHHHHHHHHHHhhH-HHHHHHHHHHHhcCccchHHHHHHHHHHH--------HHHHHHHHHHHHHHHHh--hChHHHH
Confidence            4466777777777777 67777776665555235555555555454        56677777777776654  2344333


Q ss_pred             HHHH-HHHHHhcCcHHHHHHHHHHHHHcC------------CC----------------CCCccccccCCCCchHHHHHH
Q 010739          194 IEKV-ISLYWEMEKKERAVLFVKAVLSRG------------IA----------------YAEGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       194 y~~l-i~~~~~~g~~~~A~~l~~~m~~~~------------~~----------------p~~~ty~~~~~~~~~~~~~~~  244 (502)
                      |... -..+-+.+.+.+|+++...|.+..            ++                |...+-.+        ++...
T Consensus        80 YrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~--------~in~g  151 (459)
T KOG4340|consen   80 YRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADG--------QINLG  151 (459)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccch--------hccch
Confidence            3321 123345556666666665554321            00                00000111        22222


Q ss_pred             HH---hCcHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhc--h-HHHHHHHHh
Q 010739          245 MV---EGKYVDAIKLVIHLRES-GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDG--K-NLGLIEKYQ  317 (502)
Q Consensus       245 ~~---~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~~li~~~~  317 (502)
                      |.   .|++++|++-|+.-.+- |.+| ...||..+.-|.+.  +.+.|++...+.+.+|+...+..  - .+-.++.-.
T Consensus       152 CllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~--qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs  228 (459)
T KOG4340|consen  152 CLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSR--QYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS  228 (459)
T ss_pred             heeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhh--hHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence            22   46666666666655443 3433 34455555555443  56666666666665555422110  0 000000000


Q ss_pred             cCcH-HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHH
Q 010739          318 SDLL-ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDLYDIVLAICASQNEGSAV  395 (502)
Q Consensus       318 ~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a  395 (502)
                      -|+. .-+..        +    -+..+|.-..-+.+.|+++.|.+-+-.|.-. .-..|.+|...+.-.=. .++..+.
T Consensus       229 vgNt~~lh~S--------a----l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g  295 (459)
T KOG4340|consen  229 VGNTLVLHQS--------A----LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEG  295 (459)
T ss_pred             ccchHHHHHH--------H----HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCcccc
Confidence            0000 00000        0    0012222233344567777777666666422 23345566544432111 1223333


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                      .+-+.-+...+. -...||.-++-.||++.-++-|-+++.+
T Consensus       296 ~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  296 FEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence            333333333332 2456677777777777777777776665

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.0088  Score=57.94  Aligned_cols=232  Identities=13%  Similarity=0.018  Sum_probs=122.3

Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      |+.-.|..-|+......-.++.- |--+-.+|... .+.++.+..|+.-.+..- -|+.+|. .--.++.- +++++|..
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~-~~~~~~~~~F~~A~~ldp-~n~dvYy-HRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADE-NQSEKMWKDFNKAEDLDP-ENPDVYY-HRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhh-hccHHHHHHHHHHHhcCC-CCCchhH-hHHHHHHHHHHHHHHHH
Confidence            55555555555554432222221 44444555555 566666666655533321 1233332 23344333 56666666


Q ss_pred             HHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          327 LSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       327 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      -|++.+..  .+.+++.|--+--+..+.+++++++..|++.++. +.--...|+-.-..+...++++.|.+.++...+..
T Consensus       416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            66554432  3334455555555556677777777777776653 33345566666677777777777777776554433


Q ss_pred             CC-----CCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          407 SL-----CKKKTLSW--LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       407 ~~-----p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      -.     .+..++-.  ++..- =.+++..|.+++.+..+..-+ ....|.+|-.--..    .|++++|+++|++-..-
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ----~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQ----RGKIDEAIELFEKSAQL  566 (606)
T ss_pred             cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence            21     11111111  11111 126777777777776554321 22345555555555    57888888888766443


Q ss_pred             CCchhHHHHHHHh
Q 010739          480 SLIGPCLVYLYIK  492 (502)
Q Consensus       480 ~~~~~~li~~y~~  492 (502)
                      -....-++++|+=
T Consensus       567 Art~~E~~~a~s~  579 (606)
T KOG0547|consen  567 ARTESEMVHAYSL  579 (606)
T ss_pred             HHhHHHHHHHHHH
Confidence            3234455555543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.14  E-value=2.6e-06  Score=50.20  Aligned_cols=31  Identities=29%  Similarity=0.204  Sum_probs=27.2

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGK  372 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  372 (502)
                      ++||+||++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4789999999999999999999999988774

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.14  E-value=2.5e-06  Score=50.28  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Q 010739          192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGI  222 (502)
Q Consensus       192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~  222 (502)
                      ++||++|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4799999999999999999999999999884

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.13  E-value=0.00048  Score=64.63  Aligned_cols=239  Identities=14%  Similarity=0.059  Sum_probs=141.2

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739          240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-  318 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-  318 (502)
                      +...++..|+++.++   .+..... .|.......+...+ +...+-+.++.-+++....+..++..++....-..+.. 
T Consensus        41 ~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~-~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~  115 (290)
T PF04733_consen   41 QYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYL-SSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE  115 (290)
T ss_dssp             HHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHH-CTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHH-hCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence            455556668776554   3333333 66665554443333 33245566655555543333332233332122223666 


Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChhH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAIC----ASQNEGSA  394 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~----~~~~~~~~  394 (502)
                      |++++|++++..     .  .+.......+..|.+.++++.|.+.++.|.+.  ..|.... .+..++    ...+.+.+
T Consensus       116 ~~~~~AL~~l~~-----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~-qLa~awv~l~~g~e~~~~  185 (290)
T PF04733_consen  116 GDYEEALKLLHK-----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILT-QLAEAWVNLATGGEKYQD  185 (290)
T ss_dssp             CHHHHHHCCCTT-----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHH-HHHHHHHHHHHTTTCCCH
T ss_pred             CCHHHHHHHHHc-----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH-HHHHHHHHHHhCchhHHH
Confidence            999999997742     1  34457778899999999999999999999854  4454433 333322    22346899


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHh
Q 010739          395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCK  474 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~  474 (502)
                      |..+|+++... ..++..+.+.+..++...|++++|.+++++..+..- -|..|...++-....   .+...+.+.+.+.
T Consensus       186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~---~gk~~~~~~~~l~  260 (290)
T PF04733_consen  186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLH---LGKPTEAAERYLS  260 (290)
T ss_dssp             HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHH---TT-TCHHHHHHHH
T ss_pred             HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHH---hCCChhHHHHHHH
Confidence            99999998654 467889999999999999999999999999776542 233444444444433   1334467777888


Q ss_pred             hhhhcCCchhHHHHHHHhhcchhh
Q 010739          475 RLSDTSLIGPCLVYLYIKKYKLWI  498 (502)
Q Consensus       475 ~m~~~~~~~~~li~~y~~~g~~~~  498 (502)
                      ++.....-.|-+.+.-.+...++.
T Consensus       261 qL~~~~p~h~~~~~~~~~~~~FD~  284 (290)
T PF04733_consen  261 QLKQSNPNHPLVKDLAEKEAEFDR  284 (290)
T ss_dssp             HCHHHTTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHHH
Confidence            887665234444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.12  E-value=0.0032  Score=55.02  Aligned_cols=194  Identities=14%  Similarity=0.020  Sum_probs=128.5

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739          272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM  350 (502)
Q Consensus       272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  350 (502)
                      ..-+--+|... |+...|..-+++-++.  +|+..-....+-..|.+ |..+.|.+-|++........-|  +.|..-.-
T Consensus        38 rlqLal~YL~~-gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd--VLNNYG~F  112 (250)
T COG3063          38 RLQLALGYLQQ-GDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD--VLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHC-CCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc--hhhhhhHH
Confidence            34455566677 6788887777666433  45444433244445777 8888888888777766555545  77777777


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010739          351 YICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIND  429 (502)
Q Consensus       351 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  429 (502)
                      +|..|++++|...|++..+.---| -..||..+--+..+.|+.+.|.+.++.-....-. ...+.-.+.+...+.|+.-.
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence            888888888888888877653222 2346666666667788888888888776655421 34455557777788888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          430 AAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       430 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      |...+++....|. ++.......|.--..    .|+.+.+.+.=..+
T Consensus       192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~----~gd~~~a~~Y~~qL  233 (250)
T COG3063         192 ARLYLERYQQRGG-AQAESLLLGIRIAKR----LGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHHHHHHhccc-ccHHHHHHHHHHHHH----hccHHHHHHHHHHH
Confidence            8888888766655 777666655555444    67777666654444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.11  E-value=0.0042  Score=65.05  Aligned_cols=329  Identities=13%  Similarity=0.079  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHH---HHHH------Hhh--
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVD---LLVD------MDC--  184 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~---~~~~------m~~--  184 (502)
                      .+.++.-.-|.++. +.-+.+++.....|..|+.+||++.+.+..       .+++.+..++   .++.      -.+  
T Consensus       841 ~deLv~EvEkRNRL-klLlp~LE~~i~eG~~d~a~hnAlaKIyID-------SNNnPE~fLkeN~yYDs~vVGkYCEKRD  912 (1666)
T KOG0985|consen  841 VDELVEEVEKRNRL-KLLLPWLESLIQEGSQDPATHNALAKIYID-------SNNNPERFLKENPYYDSKVVGKYCEKRD  912 (1666)
T ss_pred             hHHHHHHHHhhhhH-HHHHHHHHHHHhccCcchHHHhhhhheeec-------CCCChHHhcccCCcchhhHHhhhhcccC
Confidence            45566667777788 788888888889998899999999987762       2222222221   0000      000  


Q ss_pred             ---------CCC--------CCCHHHHHHHHHHHHhcCcHHHHH-----------HHHHHHHHcCCCCCCccccccCCCC
Q 010739          185 ---------VGL--------KPGFSMIEKVISLYWEMEKKERAV-----------LFVKAVLSRGIAYAEGDGEGQQGGP  236 (502)
Q Consensus       185 ---------~g~--------~p~~~~y~~li~~~~~~g~~~~A~-----------~l~~~m~~~~~~p~~~ty~~~~~~~  236 (502)
                               +|-        .-.-..|-..-+-+.+..|.+-=.           ++.++..+.++.-+      .....
T Consensus       913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~------~dPe~  986 (1666)
T KOG0985|consen  913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPET------QDPEE  986 (1666)
T ss_pred             CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCcc------CChHH
Confidence                     110        000122333333344444433222           23344444433211      22233


Q ss_pred             chHHHHHHHHhCcHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHH
Q 010739          237 TGYLAWKMMVEGKYVDAIKLVIHLRES--GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIE  314 (502)
Q Consensus       237 ~~~~~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~  314 (502)
                      .++.+.+++-++-+.+-+++++...-.  -+.-+...-|.+|-...|.  +..+..+.++++..... |+..       .
T Consensus       987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika--d~trVm~YI~rLdnyDa-~~ia-------~ 1056 (1666)
T KOG0985|consen  987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA--DRTRVMEYINRLDNYDA-PDIA-------E 1056 (1666)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc--ChHHHHHHHHHhccCCc-hhHH-------H
Confidence            445677888889999999999887643  2223334456677777777  56777777666633221 2211       1


Q ss_pred             HHhc-CcHHhHHHHHHH--------------------HHH--cCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 010739          315 KYQS-DLLADGSRLSSW--------------------AIQ--EGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG  371 (502)
Q Consensus       315 ~~~~-g~~~~a~~~~~~--------------------m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  371 (502)
                      .+.. +-+++|..+|++                    ..+  ..+..+  ..|..+-.+-.+.|.+.+|.+-|-+.    
T Consensus      1057 iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred             HHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence            1112 333344443311                    111  112233  38888888888889888888776543    


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739          372 KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVA  451 (502)
Q Consensus       372 ~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  451 (502)
                        -|...|.-+++.+.+.|.+++..+.+...++....|.+.  +.||-+|++.+++.+-.+++.       -||......
T Consensus      1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQ 1199 (1666)
T ss_pred             --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHH
Confidence              377889999999999999999999988887777676655  479999999999988776654       367666666


Q ss_pred             HHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHH
Q 010739          452 VLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYL  489 (502)
Q Consensus       452 ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~  489 (502)
                      +=+-|..    .+..+.|.-++.....-..+...||+.
T Consensus      1200 vGdrcf~----~~~y~aAkl~y~~vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1200 VGDRCFE----EKMYEAAKLLYSNVSNFAKLASTLVYL 1233 (1666)
T ss_pred             HhHHHhh----hhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            6666665    566666666665554433344455543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.10  E-value=0.0012  Score=66.62  Aligned_cols=188  Identities=18%  Similarity=0.090  Sum_probs=113.4

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                      .|.+...+ +.+.+|+.+++...+.....  --|. .+-+-|+. |+++.|+++|.+        .+  .++-.|..|.+
T Consensus       738 aieaai~a-kew~kai~ildniqdqk~~s--~yy~-~iadhyan~~dfe~ae~lf~e--------~~--~~~dai~my~k  803 (1636)
T KOG3616|consen  738 AIEAAIGA-KEWKKAISILDNIQDQKTAS--GYYG-EIADHYANKGDFEIAEELFTE--------AD--LFKDAIDMYGK  803 (1636)
T ss_pred             HHHHHhhh-hhhhhhHhHHHHhhhhcccc--ccch-HHHHHhccchhHHHHHHHHHh--------cc--hhHHHHHHHhc
Confidence            34445555 78889988888775543321  1232 46666888 999999998843        12  67778889999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 010739          354 AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAET  433 (502)
Q Consensus       354 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l  433 (502)
                      +|++++|+++-++..  |-+.....|.+-..-.-..|++.+|.+++-.+.    .|+.     -|..|-+.|..++.+++
T Consensus       804 ~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirl  872 (1636)
T KOG3616|consen  804 AGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRL  872 (1636)
T ss_pred             cccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHH
Confidence            999999998876643  555556666666666777788877777663322    2332     36667777777777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhh
Q 010739          434 LTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWI  498 (502)
Q Consensus       434 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~  498 (502)
                      .++--...+.   .|...+    .+.++..|++.+|..-|-+..    -..+-|+||-.+|-++.
T Consensus       873 v~k~h~d~l~---dt~~~f----~~e~e~~g~lkaae~~flea~----d~kaavnmyk~s~lw~d  926 (1636)
T KOG3616|consen  873 VEKHHGDHLH---DTHKHF----AKELEAEGDLKAAEEHFLEAG----DFKAAVNMYKASELWED  926 (1636)
T ss_pred             HHHhChhhhh---HHHHHH----HHHHHhccChhHHHHHHHhhh----hHHHHHHHhhhhhhHHH
Confidence            6652111111   111111    223333566666666543222    24556666666554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.00012  Score=68.78  Aligned_cols=244  Identities=9%  Similarity=-0.013  Sum_probs=145.7

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH-HH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM-MV  246 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~-~~  246 (502)
                      -.|++..++.-.+ .....-..+....--+.++|...|+.+.+.   .++.... .|..          ..+-.++- +.
T Consensus        13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l----------~av~~la~y~~   77 (290)
T PF04733_consen   13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPEL----------QAVRLLAEYLS   77 (290)
T ss_dssp             CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCC----------HHHHHHHHHHC
T ss_pred             HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhH----------HHHHHHHHHHh
Confidence            3577777775444 222222223455566778888889877543   4443332 3332          11122222 22


Q ss_pred             h-CcHHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739          247 E-GKYVDAIKLVIHLRESGLKPEVYSYL-IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       247 ~-g~~~~a~~~~~~m~~~g~~p~~~ty~-~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~  323 (502)
                      . ++-+.++.-+++....+..++..++. ..-..+... |++++|+++++.-      .+..... ..|..|.+ ++.+.
T Consensus        78 ~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~-~~~~~AL~~l~~~------~~lE~~a-l~Vqi~L~~~R~dl  149 (290)
T PF04733_consen   78 SPSDKESALEELKELLADQAGESNEIVQLLAATILFHE-GDYEEALKLLHKG------GSLELLA-LAVQILLKMNRPDL  149 (290)
T ss_dssp             TSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC-CHHHHHHCCCTTT------TCHHHHH-HHHHHHHHTT-HHH
T ss_pred             CccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc-CCHHHHHHHHHcc------CcccHHH-HHHHHHHHcCCHHH
Confidence            2 34455554444433333332222322 222334445 7999998877652      2233322 46777888 99999


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL  399 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~  399 (502)
                      |.+.++.|.+..  ..+  +-..+..++..    .+.+.+|+.+|+++.+ ...++..+.|.+..+....|++++|.+++
T Consensus       150 A~k~l~~~~~~~--eD~--~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L  224 (290)
T PF04733_consen  150 AEKELKNMQQID--EDS--ILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELL  224 (290)
T ss_dssp             HHHHHHHHHCCS--CCH--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred             HHHHHHHHHhcC--CcH--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            999999987653  323  44445555554    3469999999999865 46788899999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 010739          400 SRIEVMNSLCKKKTLSWLLRGYIKGGHI-NDAAETLTKMLDL  440 (502)
Q Consensus       400 ~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~  440 (502)
                      ++....+ .-+..+..-+|......|+. +.+.+++.+++..
T Consensus       225 ~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  225 EEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            8865544 23566666688888888887 7788888888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.08  E-value=0.0048  Score=60.30  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=101.4

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC-HHHHHHHHHH
Q 010739          122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG-FSMIEKVISL  200 (502)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~  200 (502)
                      .+...|+. +.|.+.++...+....|...+.. ...+.. ...   ..+..+.+.+.++.  .....|+ ......+-..
T Consensus        52 ~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~-~~~---~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          52 SAWIAGDL-PKALALLEQLLDDYPRDLLALKL-HLGAFG-LGD---FSGMRDHVARVLPL--WAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHH-hHHHHH-hcc---cccCchhHHHHHhc--cCcCCCCcHHHHHHHHHH
Confidence            44566888 89999999988776335544442 111110 000   34556666666654  2223333 3455566678


Q ss_pred             HHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC-CCCH--hHHHHHH
Q 010739          201 YWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL-KPEV--YSYLIAL  276 (502)
Q Consensus       201 ~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~ty~~li  276 (502)
                      +...|++++|.+.+++..+..  |+.. .+..        +...+...|++++|...+++.....- .|+.  ..|..+.
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~--------la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELN--PDDAWAVHA--------VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhC--CCCcHHHHH--------HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            889999999999999998765  4421 2222        44455567999999999998776521 2333  2345677


Q ss_pred             HHHHhccccHHHHHHHHHHHH
Q 010739          277 TAVVKELNEFGKALRKLKGYV  297 (502)
Q Consensus       277 ~~~~~~~~~~~~a~~~~~~m~  297 (502)
                      ..+... |+.++|...+++..
T Consensus       194 ~~~~~~-G~~~~A~~~~~~~~  213 (355)
T cd05804         194 LFYLER-GDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHC-CCHHHHHHHHHHHh
Confidence            777788 89999999999874

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.08  E-value=0.0036  Score=59.40  Aligned_cols=223  Identities=9%  Similarity=-0.068  Sum_probs=131.2

Q ss_pred             CcHHHHHHHHHHHHHc-CCCCCH--hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHH
Q 010739          248 GKYVDAIKLVIHLRES-GLKPEV--YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~-g~~p~~--~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~  322 (502)
                      +..+.++.-+.++... ...|+.  ..|...-..+.+. |+.++|...|++..+.  .|+ ...|+ .+-..|.. |+++
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~Al~l--~P~~~~a~~-~lg~~~~~~g~~~  115 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL-GLRALARNDFSQALAL--RPDMADAYN-YLGIYLTQAGNFD  115 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHc--CCCCHHHHH-HHHHHHHHCCCHH
Confidence            5667777777777754 233332  4455566667777 7888888888777553  343 34443 45566777 8999


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      +|...|++..+....  +...|..+...+...|++++|.+.|++..+.  .|+..........+...++.++|.+.++..
T Consensus       116 ~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~  191 (296)
T PRK11189        116 AAYEAFDSVLELDPT--YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR  191 (296)
T ss_pred             HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            998888887765433  3347777888888888999998888887753  454332222222334456788888888554


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---C--CC-CHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          403 EVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG---L--YP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~--~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      .... .|+  .|.+- ......|+.+++ +.++.+.+..   .  .| ....|..+-..+.+    .|+.++|+..|+..
T Consensus       192 ~~~~-~~~--~~~~~-~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~----~g~~~~A~~~~~~A  262 (296)
T PRK11189        192 YEKL-DKE--QWGWN-IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLS----LGDLDEAAALFKLA  262 (296)
T ss_pred             HhhC-Ccc--ccHHH-HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence            3222 222  22222 222334555443 3444444321   1  11 12345555555555    78888888888887


Q ss_pred             hhcCCchhHHHH
Q 010739          477 SDTSLIGPCLVY  488 (502)
Q Consensus       477 ~~~~~~~~~li~  488 (502)
                      .... +++.+-+
T Consensus       263 l~~~-~~~~~e~  273 (296)
T PRK11189        263 LANN-VYNFVEH  273 (296)
T ss_pred             HHhC-CchHHHH
Confidence            6655 4343333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=0.013  Score=57.73  Aligned_cols=270  Identities=12%  Similarity=0.029  Sum_probs=196.2

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      ...++.+...++++..+. .+++...+-.=|.++...|+..+-..+=.+|.+.- +-...+|-.        +-.-+..-
T Consensus       256 ~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a--------Vg~YYl~i  325 (611)
T KOG1173|consen  256 YGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA--------VGCYYLMI  325 (611)
T ss_pred             HcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh--------HHHHHHHh
Confidence            788999999999987765 45566677778889999999888777777776654 222233333        33334445


Q ss_pred             CcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc-CcHHhH
Q 010739          248 GKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS-DLLADG  324 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~-g~~~~a  324 (502)
                      |+..+|.+.|.+-..  +.|. ...|-.+-+.|+-. ++.|.|+..+..--+  +.|..+--. .-+.+ |.+ +..+-|
T Consensus       326 ~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e-~EhdQAmaaY~tAar--l~~G~hlP~-LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  326 GKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGE-GEHDQAMAAYFTAAR--LMPGCHLPS-LYLGMEYMRTNNLKLA  399 (611)
T ss_pred             cCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhc-chHHHHHHHHHHHHH--hccCCcchH-HHHHHHHHHhccHHHH
Confidence            999999999987553  3333 24566677788888 788888876655421  222222211 23333 888 999999


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GK---E-ADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~-p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      .+.|.....  +.|.|+...+-+--...+.+.+.+|..+|+.-.+.  .+   . --..+++.|=.+|.+.+..++|...
T Consensus       400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            999976443  44556678888877777889999999999887632  11   1 1344567777899999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      ++...... .-|..++..+--.|...|+++.|.+.|.+-+  .+.||-.+-..++.-+..
T Consensus       478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence            98887765 3488899999889999999999999999854  788999888888887753

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.04  E-value=3.8e-05  Score=58.88  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CCCCccccccCCCCchHHHHHHHH--------hCcHHHHHHHHHHHHHc
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRGI-AYAEGDGEGQQGGPTGYLAWKMMV--------EGKYVDAIKLVIHLRES  263 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~ty~~~~~~~~~~~~~~~~~--------~g~~~~a~~~~~~m~~~  263 (502)
                      |-...|.-+...+++.....+|+.+++.|+ .|++.+|+.        ++...++        .+++-+.+.+|+.|...
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~--------VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~   98 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNK--------VLKSIAKRELDSEDIENKLTNLLTVYQDILSN   98 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHH--------HHHHHHHccccchhHHHHHHHHHHHHHHHHHh
Confidence            444566666666888888888888888888 788888888        6666665        24677888999999999


Q ss_pred             CCCCCHhHHHHHHHHHHhc
Q 010739          264 GLKPEVYSYLIALTAVVKE  282 (502)
Q Consensus       264 g~~p~~~ty~~li~~~~~~  282 (502)
                      +++|+..||+.++..+.+.
T Consensus        99 ~lKP~~etYnivl~~Llkg  117 (120)
T PF08579_consen   99 KLKPNDETYNIVLGSLLKG  117 (120)
T ss_pred             ccCCcHHHHHHHHHHHHHh
Confidence            9999999999999998775

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.99  E-value=7.1e-05  Score=72.95  Aligned_cols=119  Identities=13%  Similarity=0.088  Sum_probs=91.8

Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWL  417 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~l  417 (502)
                      +.+....+++.+....+++++..++.+.+..  ....-..|..++|..|...|..+.+..++..-..+|+-||..|||.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            3456666777777777788888888877765  33334456678888888888888888888888888888888888888


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          418 LRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       418 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      |+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            88888888888888888888888777777888877777754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.98  E-value=0.0023  Score=55.96  Aligned_cols=189  Identities=12%  Similarity=0.006  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      .-.+--+|.+.|+. ..|..-+++..+..+-+..+|..+...+-        +.|..+.|.+.|+...+..- -+-.+.|
T Consensus        38 rlqLal~YL~~gd~-~~A~~nlekAL~~DPs~~~a~~~~A~~Yq--------~~Ge~~~A~e~YrkAlsl~p-~~GdVLN  107 (250)
T COG3063          38 RLQLALGYLQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQ--------KLGENDLADESYRKALSLAP-NNGDVLN  107 (250)
T ss_pred             HHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHH--------HcCChhhHHHHHHHHHhcCC-Cccchhh
Confidence            44555677888889 79999999998888446668888877676        88999999999988776422 2556788


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcC-CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHH
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRG-IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE-VYSYL  273 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~  273 (502)
                      ..-..+|..|++++|...|++....- ..--..||..        +-+..++.|+.+.|.+.|++-.+.  .|+ ..+..
T Consensus       108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN--------~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l  177 (250)
T COG3063         108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLEN--------LGLCALKAGQFDQAEEYLKRALEL--DPQFPPALL  177 (250)
T ss_pred             hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhh--------hHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHH
Confidence            88888899999999999998877553 2222345555        677788889999999999887765  232 35566


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHH
Q 010739          274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRL  327 (502)
Q Consensus       274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~  327 (502)
                      .+.....+. ++...|...++.....+- ++..+.. .-|..-.. |+.+.+.+.
T Consensus       178 ~~a~~~~~~-~~y~~Ar~~~~~~~~~~~-~~A~sL~-L~iriak~~gd~~~a~~Y  229 (250)
T COG3063         178 ELARLHYKA-GDYAPARLYLERYQQRGG-AQAESLL-LGIRIAKRLGDRAAAQRY  229 (250)
T ss_pred             HHHHHHHhc-ccchHHHHHHHHHHhccc-ccHHHHH-HHHHHHHHhccHHHHHHH
Confidence            677778888 788888888877755554 6666543 23444444 777666654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.95  E-value=0.00015  Score=55.66  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=46.3

Q ss_pred             HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          386 CASQNEGSAVSRLLSRIEVMNS-LCKKKTLSWLLRGYIKG--------GHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       386 ~~~~~~~~~a~~l~~~m~~~~~-~p~~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      |...+++.....+++.++..|+ .|+..+|+.++.+.++.        +++-+.+.+|+.|+..+++|+..||+.++..+
T Consensus        35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L  114 (120)
T PF08579_consen   35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL  114 (120)
T ss_pred             HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence            3333444444444444444444 44444444444444432        23446788999999999999999999999998


Q ss_pred             Hc
Q 010739          457 RK  458 (502)
Q Consensus       457 ~~  458 (502)
                      .+
T Consensus       115 lk  116 (120)
T PF08579_consen  115 LK  116 (120)
T ss_pred             HH
Confidence            75

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.0012  Score=63.71  Aligned_cols=217  Identities=12%  Similarity=0.046  Sum_probs=133.3

Q ss_pred             CCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739          127 GRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK  206 (502)
Q Consensus       127 ~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~  206 (502)
                      |+. ..|.+-|+...+....+...|--+-..+.        ...+-++....|.+..+.+-. |..+|..--..+.-.++
T Consensus       340 g~~-~~a~~d~~~~I~l~~~~~~lyI~~a~~y~--------d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q  409 (606)
T KOG0547|consen  340 GDS-LGAQEDFDAAIKLDPAFNSLYIKRAAAYA--------DENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ  409 (606)
T ss_pred             CCc-hhhhhhHHHHHhcCcccchHHHHHHHHHh--------hhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence            555 57777788777766222222444444445        667777777878777665432 44556555556666677


Q ss_pred             HHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc
Q 010739          207 KERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE  285 (502)
Q Consensus       207 ~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~  285 (502)
                      +++|..=|++-.+.+  |. +..|-.        +.+...+.++++++...|++-+.+ ++--+..||-.-..+... ++
T Consensus       410 ~e~A~aDF~Kai~L~--pe~~~~~iQ--------l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDq-qq  477 (606)
T KOG0547|consen  410 YEEAIADFQKAISLD--PENAYAYIQ--------LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQ-QQ  477 (606)
T ss_pred             HHHHHHHHHHHhhcC--hhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhH-Hh
Confidence            788888777766543  32 122222        555566678888888888887766 444567778888888888 78


Q ss_pred             HHHHHHHHHHHHHcC-----CCCchh--chHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChH
Q 010739          286 FGKALRKLKGYVRAG-----SIAELD--GKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGL  358 (502)
Q Consensus       286 ~~~a~~~~~~m~~~g-----~~p~~~--~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  358 (502)
                      +++|.+.++.-++..     +..+..  +.. +++-.=-++++..|.+++++..+....  ....|-+|-..-.+.|+.+
T Consensus       478 Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~K-a~l~~qwk~d~~~a~~Ll~KA~e~Dpk--ce~A~~tlaq~~lQ~~~i~  554 (606)
T KOG0547|consen  478 FDKAVKQYDKAIELEPREHLIIVNAAPLVHK-ALLVLQWKEDINQAENLLRKAIELDPK--CEQAYETLAQFELQRGKID  554 (606)
T ss_pred             HHHHHHHHHHHHhhccccccccccchhhhhh-hHhhhchhhhHHHHHHHHHHHHccCch--HHHHHHHHHHHHHHHhhHH
Confidence            888888777653321     111111  111 122111227778888877765554322  2357777777777888888


Q ss_pred             HHHHHHHHHH
Q 010739          359 EAERQLWEMK  368 (502)
Q Consensus       359 ~A~~l~~~m~  368 (502)
                      +|+++|++-.
T Consensus       555 eAielFEksa  564 (606)
T KOG0547|consen  555 EAIELFEKSA  564 (606)
T ss_pred             HHHHHHHHHH
Confidence            8888887643

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.91  E-value=0.0003  Score=61.04  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739          145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY  224 (502)
Q Consensus       145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p  224 (502)
                      ..|..+|..+|+.+...-..   +.|.++=....+..|.+.|+.-|..+|+.||+.+=+ |.+- -..+|+.+=-+    
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~---RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h----  114 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVR---RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH----  114 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCC---CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc----
Confidence            35788899999988754221   678999999999999999999999999999999865 4433 22222222110    


Q ss_pred             CCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739          225 AEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY  296 (502)
Q Consensus       225 ~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m  296 (502)
                                           --.+-+-|++++++|+..|+-||..|+..+++.|++.+--+.+..++.--|
T Consensus       115 ---------------------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm  165 (228)
T PF06239_consen  115 ---------------------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM  165 (228)
T ss_pred             ---------------------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                                 014567889999999999999999999999999999843344555544444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.89  E-value=0.0011  Score=67.11  Aligned_cols=237  Identities=12%  Similarity=0.081  Sum_probs=183.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC
Q 010739          187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK  266 (502)
Q Consensus       187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~  266 (502)
                      ++|--..--.+...+...|-...|..+|+.+..-.                 -++..++..|+..+|..+..+-.+  -+
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw~-----------------~vi~CY~~lg~~~kaeei~~q~le--k~  454 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMWD-----------------PVILCYLLLGQHGKAEEINRQELE--KD  454 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHH-----------------HHHHHHHHhcccchHHHHHHHHhc--CC
Confidence            44544555667788899999999999999875322                 278888889999999998888776  47


Q ss_pred             CCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHH-HhcCcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739          267 PEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEK-YQSDLLADGSRLSSWAIQEGGSSLYGVVH  344 (502)
Q Consensus       267 p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  344 (502)
                      ||..-|..+.+..... .=+++|+++.+.- .+...         ++-.. |.+++++++.+.|+.......-...  +|
T Consensus       455 ~d~~lyc~LGDv~~d~-s~yEkawElsn~~sarA~r---------~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--~w  522 (777)
T KOG1128|consen  455 PDPRLYCLLGDVLHDP-SLYEKAWELSNYISARAQR---------SLALLILSNKDFSEADKHLERSLEINPLQLG--TW  522 (777)
T ss_pred             CcchhHHHhhhhccCh-HHHHHHHHHhhhhhHHHHH---------hhccccccchhHHHHHHHHHHHhhcCccchh--HH
Confidence            8999999999888887 5689999988765 33111         11111 2237999999999887776655555  89


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739          345 ERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK  423 (502)
Q Consensus       345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~  423 (502)
                      -..-.+..+.++++.|.+.|..-..  ..|| ...||.+-.++.+.++-.+|...+.+..+++ .-+...|.-.+....+
T Consensus       523 f~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvd  599 (777)
T KOG1128|consen  523 FGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVD  599 (777)
T ss_pred             HhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhh
Confidence            8888888899999999999998763  5665 4679999999999999999999999998888 4466667667888899


Q ss_pred             CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 010739          424 GGHINDAAETLTKMLDLG-LYPEYMDRVAVLQGLR  457 (502)
Q Consensus       424 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~  457 (502)
                      .|.+++|++.+.+|.+.. -.-|......++....
T Consensus       600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             cccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            999999999999987643 1236666666666654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.88  E-value=0.0077  Score=65.28  Aligned_cols=236  Identities=11%  Similarity=-0.022  Sum_probs=159.7

Q ss_pred             HHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCcHHHH
Q 010739          136 VFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP-----GFSMIEKVISLYWEMEKKERA  210 (502)
Q Consensus       136 ~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~y~~li~~~~~~g~~~~A  210 (502)
                      =|+.......-+...|-..+.-..        +.+.+++|.++.++.... +.+     -...|.++++.-.-.|.-+..
T Consensus      1446 DferlvrssPNSSi~WI~YMaf~L--------elsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHL--------ELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHh--------hhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence            344444443224456666556455        788999999999887654 211     124688888888888888999


Q ss_pred             HHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHH
Q 010739          211 VLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKAL  290 (502)
Q Consensus       211 ~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~  290 (502)
                      .++|++..+.--...  .|..        +.--+-+.++.++|.++|+.|.++ +.-....|...+..+.+. ++-+.|.
T Consensus      1517 ~kVFeRAcqycd~~~--V~~~--------L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~-ne~~aa~ 1584 (1710)
T KOG1070|consen 1517 KKVFERACQYCDAYT--VHLK--------LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ-NEAEAAR 1584 (1710)
T ss_pred             HHHHHHHHHhcchHH--HHHH--------HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc-cHHHHHH
Confidence            999998876541111  1111        444455578999999999999887 445667888888899888 7778888


Q ss_pred             HHHHHHHHcCCCCchh-chHHHHHHH-HhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          291 RKLKGYVRAGSIAELD-GKNLGLIEK-YQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       291 ~~~~~m~~~g~~p~~~-~~~~~li~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      .++.+-.+.--....+ ... ....+ |..|+-+.+..+|+..........|  .|+..|..=.+.|+.+.+..+|++..
T Consensus      1585 ~lL~rAL~~lPk~eHv~~Is-kfAqLEFk~GDaeRGRtlfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFIS-KFAQLEFKYGDAERGRTLFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred             HHHHHHHhhcchhhhHHHHH-HHHHHHhhcCCchhhHHHHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            8877664331111111 111 12222 4449999999999988888777777  99999999999999999999999999


Q ss_pred             HCCCCCCH--HHHHHHHHHHHhcCChhHH
Q 010739          369 LVGKEADG--DLYDIVLAICASQNEGSAV  395 (502)
Q Consensus       369 ~~g~~p~~--~t~~~li~~~~~~~~~~~a  395 (502)
                      ..++.|--  ..|.--+..=...|+-..+
T Consensus      1662 ~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1662 ELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred             hcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence            88887642  3445555544444544433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.86  E-value=0.041  Score=55.33  Aligned_cols=337  Identities=12%  Similarity=0.044  Sum_probs=176.8

Q ss_pred             HHHHHHHHHHc-CCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          116 LQLVLVYFSQE-GRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       116 ~~~ll~~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      +..++..+.|. ..+ ++|+..|....+.++-|...|.-+--.-.        +.|+++.....-.+..+. .+-....|
T Consensus        77 CwHv~gl~~R~dK~Y-~eaiKcy~nAl~~~~dN~qilrDlslLQ~--------QmRd~~~~~~tr~~LLql-~~~~ra~w  146 (700)
T KOG1156|consen   77 CWHVLGLLQRSDKKY-DEAIKCYRNALKIEKDNLQILRDLSLLQI--------QMRDYEGYLETRNQLLQL-RPSQRASW  146 (700)
T ss_pred             hHHHHHHHHhhhhhH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHH--------HHHhhhhHHHHHHHHHHh-hhhhHHHH
Confidence            33444444443 455 78888888887777556666654433222        566777666666666554 22345678


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcC-CCCCCccccc------------cCCCCchH--------------HH------
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRG-IAYAEGDGEG------------QQGGPTGY--------------LA------  241 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~ty~~------------~~~~~~~~--------------~~------  241 (502)
                      ..+.-++--.|+...|..++++.++.. -.|+..+|.-            +.|.+...              +.      
T Consensus       147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka  226 (700)
T KOG1156|consen  147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA  226 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence            888888888899999999999887665 3455555532            11110000              00      


Q ss_pred             HHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hccccHHHHH-HHHHHHHHcC---CCCchhchHHHHHHHH
Q 010739          242 WKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV-KELNEFGKAL-RKLKGYVRAG---SIAELDGKNLGLIEKY  316 (502)
Q Consensus       242 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~-~~~~~~~~a~-~~~~~m~~~g---~~p~~~~~~~~li~~~  316 (502)
                      .-.++-+++++|..++..+...  .||..-|...+..+. +. .+..++. .++....+.-   ..|--...  .++.. 
T Consensus       227 ~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~-~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl--svl~~-  300 (700)
T KOG1156|consen  227 DLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKI-KDMLEALKALYAILSEKYPRHECPRRLPL--SVLNG-  300 (700)
T ss_pred             HHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHH-hhhHHHHHHHHHHHhhcCcccccchhccH--HHhCc-
Confidence            0001125666666666666654  455555444333332 33 2333333 3333331110   00100000  00100 


Q ss_pred             hcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC------------CCCHHHH--H
Q 010739          317 QSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GK------------EADGDLY--D  380 (502)
Q Consensus       317 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~------------~p~~~t~--~  380 (502)
                       ..-.+...+++..+.+.|+|.    ++..+..-|-.....+-..++.-.+...  |-            .|....|  -
T Consensus       301 -eel~~~vdkyL~~~l~Kg~p~----vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y  375 (700)
T KOG1156|consen  301 -EELKEIVDKYLRPLLSKGVPS----VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY  375 (700)
T ss_pred             -chhHHHHHHHHHHHhhcCCCc----hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence             011222223444555566555    5555555444333222222222222211  11            3444444  3


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 010739          381 IVLAICASQNEGSAVSRLLSRIEVMNSLCKK-KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKR  459 (502)
Q Consensus       381 ~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~  459 (502)
                      .++..+-+.|+++.|...++.....  .|+. ..|-.=-+.+...|++++|..++++..+... ||...=.-...-..+ 
T Consensus       376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLr-  451 (700)
T KOG1156|consen  376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLR-  451 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHH-
Confidence            4457788888888888888776543  3442 2343444678888899999888888766542 454433333333345 


Q ss_pred             ccccccHHHHHHHHhhhhhcC
Q 010739          460 IQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       460 ~~~~~~~~~a~~~~~~m~~~~  480 (502)
                         ++++++|.+.+..+.+.|
T Consensus       452 ---An~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  452 ---ANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             ---ccccHHHHHHHHHhhhcc
Confidence               788888888888776666

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.84  E-value=0.00056  Score=66.81  Aligned_cols=131  Identities=14%  Similarity=0.060  Sum_probs=107.0

Q ss_pred             HHHHHHHc---CCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHc--CCCCchhchHHHHHHHHhc-CcHHhHHHHHH
Q 010739          256 LVIHLRES---GLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRA--GSIAELDGKNLGLIEKYQS-DLLADGSRLSS  329 (502)
Q Consensus       256 ~~~~m~~~---g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~  329 (502)
                      ++..|.+.   +...+......+++.+... .+++.+..++..+...  ....-..|.. ++|+.|.+ |..+.+..++.
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~h-a~vR~~l~~~~~~~~l~~L~  127 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHH-ALVRQCLELGAEDELLELLK  127 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCH-hHHHHHHHHHHHHHcCcccccccCccHH-HHHHHHHhcCCHHHHHHHHh
Confidence            55666543   5667888889999999988 7899999999888544  2222233333 79999999 99999999999


Q ss_pred             HHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          330 WAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       330 ~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      .-...|+-+.+ +++|.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+-
T Consensus       128 n~~~yGiF~D~-~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  128 NRLQYGIFPDN-FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             ChhhcccCCCh-hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88889977744 899999999999999999999999999998888889988888777765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.018  Score=56.88  Aligned_cols=278  Identities=13%  Similarity=-0.029  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      ...-...+-..+++ ++.+++++...+...+....+..-|.++.        ..|+-.+-.-+=.+|.+. .+-...+|=
T Consensus       247 l~~~ad~~y~~c~f-~~c~kit~~lle~dpfh~~~~~~~ia~l~--------el~~~n~Lf~lsh~LV~~-yP~~a~sW~  316 (611)
T KOG1173|consen  247 LAEKADRLYYGCRF-KECLKITEELLEKDPFHLPCLPLHIACLY--------ELGKSNKLFLLSHKLVDL-YPSKALSWF  316 (611)
T ss_pred             HHHHHHHHHHcChH-HHHHHHhHHHHhhCCCCcchHHHHHHHHH--------HhcccchHHHHHHHHHHh-CCCCCcchh
Confidence            44444556677888 89999999998877666666766666666        566666655555555553 444667888


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc--C-CCCCHhHH
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES--G-LKPEVYSY  272 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~--g-~~p~~~ty  272 (502)
                      ++---|.-.|+.++|.+.|..-...+  |   +|..    -+-..-..+...|..++|+..+..--+.  | ..|..  |
T Consensus       317 aVg~YYl~i~k~seARry~SKat~lD--~---~fgp----aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y  385 (611)
T KOG1173|consen  317 AVGCYYLMIGKYSEARRYFSKATTLD--P---TFGP----AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y  385 (611)
T ss_pred             hHHHHHHHhcCcHHHHHHHHHHhhcC--c---cccH----HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H
Confidence            88888888899999999998665433  1   1211    0111223333457778888777655443  2 22322  2


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHH-HhcCcHHhHHHHHHHHHHcC---CCC--chHhHHH
Q 010739          273 LIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEK-YQSDLLADGSRLSSWAIQEG---GSS--LYGVVHE  345 (502)
Q Consensus       273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~-~~~g~~~~a~~~~~~m~~~~---~~~--~~~~~~~  345 (502)
                        +---|.+. +....|.+.|.+-  .++-| |+.+.+ -+--. |..+.+.+|...|+.....-   .+.  .-..+++
T Consensus       386 --lgmey~~t-~n~kLAe~Ff~~A--~ai~P~Dplv~~-Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  386 --LGMEYMRT-NNLKLAEKFFKQA--LAIAPSDPLVLH-ELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             --HHHHHHHh-ccHHHHHHHHHHH--HhcCCCcchhhh-hhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence              22234555 5677777766554  23334 344444 23322 44478888888887655221   111  1224677


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK  423 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~  423 (502)
                      .|-++|-+.++.++|+..++.-... ..-|..|+.++--.+...|+++.|.+.|....  .+.|+-.+-+.++..+..
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence            8888888888888888888876643 23366677777777788888888888887654  345766666666665444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.80  E-value=0.045  Score=53.91  Aligned_cols=128  Identities=13%  Similarity=0.043  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLS-RIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~-~m~~~~~~p~~~~~~~li~  419 (502)
                      .+|...++.--+..-+..|..+|.+.++.+..+ ++..+++++..+|. ++.+-|.++|+ .++.+|-.  ..-....++
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~Yld  443 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLD  443 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHH
Confidence            467777777777888899999999999998888 88888999988886 77888888886 56666532  333344777


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          420 GYIKGGHINDAAETLTKMLDLGLYPEY--MDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       420 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      -+..-|+-..|..+|++.+..++.||.  ..|..+|+-=..    -|++..+.++-+.+
T Consensus       444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~----vGdL~si~~lekR~  498 (656)
T KOG1914|consen  444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN----VGDLNSILKLEKRR  498 (656)
T ss_pred             HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh----cccHHHHHHHHHHH
Confidence            788889999999999999988777665  578888877665    68888888876655

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.78  E-value=0.057  Score=54.46  Aligned_cols=208  Identities=11%  Similarity=0.017  Sum_probs=97.1

Q ss_pred             hccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH--
Q 010739          169 ERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV--  246 (502)
Q Consensus       169 ~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~--  246 (502)
                      .|..++...+|++.... ++-....|-....-+...||...|..++.+.-+..  |+            +--+|-+..  
T Consensus       563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pn------------seeiwlaavKl  627 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PN------------SEEIWLAAVKL  627 (913)
T ss_pred             cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CC------------cHHHHHHHHHH
Confidence            44555555555554443 22233344444444555566666666665554433  11            112332222  


Q ss_pred             ---hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739          247 ---EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       247 ---~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~  322 (502)
                         +.++++|..+|.+-..  ..|+...|---++.---. +..++|.+++++.++.  -|+-+-..+.+-..+.+ ++++
T Consensus       628 e~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~l-d~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie  702 (913)
T KOG0495|consen  628 EFENDELERARDLLAKARS--ISGTERVWMKSANLERYL-DNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE  702 (913)
T ss_pred             hhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHh-hhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence               3566666666665544  344444433322222222 3466666666555332  23333332222222444 5566


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL  399 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~  399 (502)
                      .|.+.|..=..  .-+.....|-.+-.-=-+.|.+-+|..++++-+-.+ .-|...|-..|..-.+.|+.+.|..++
T Consensus       703 ~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  703 MAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             HHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            55554421111  111122345444444444566666666666655432 224555666666666666666655544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.77  E-value=0.11  Score=57.84  Aligned_cols=299  Identities=10%  Similarity=-0.020  Sum_probs=171.3

Q ss_pred             hhccHhhHHHHHHHHhhCC--C----CCCH--HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchH
Q 010739          168 EERGVGDVVDLLVDMDCVG--L----KPGF--SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGY  239 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g--~----~p~~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~  239 (502)
                      ..++++++..++++....-  .    .+..  .....+-..+...|++++|...+++..+.-  +....+..  ......
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~--~~a~~~  496 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSR--IVATSV  496 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHH--HHHHHH
Confidence            5688888888887764421  0    1111  222223344568999999999999876531  11111100  000011


Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCC---chhc
Q 010739          240 LAWKMMVEGKYVDAIKLVIHLRES----GL-KPEVYSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIA---ELDG  307 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p---~~~~  307 (502)
                      +...+...|++++|...+++....    |- .+-..++..+-..+... |++++|...+++...    .+...   ....
T Consensus       497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  575 (903)
T PRK04841        497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHEFL  575 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence            333344579999999999887653    11 11123444555566677 799999998877632    22211   1122


Q ss_pred             hHHHHHHHHhc-CcHHhHHHHHHHHHHcC---CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH---
Q 010739          308 KNLGLIEKYQS-DLLADGSRLSSWAIQEG---GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKE-ADGDLY---  379 (502)
Q Consensus       308 ~~~~li~~~~~-g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~---  379 (502)
                      +. .+-..+.. |++++|...+.+.....   .+......+..+-..+...|+.++|.+.+++.....-. .....+   
T Consensus       576 ~~-~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~  654 (903)
T PRK04841        576 LR-IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN  654 (903)
T ss_pred             HH-HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence            21 23333444 99999999988765532   12222344555666777899999999999887543111 111111   


Q ss_pred             --HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHH
Q 010739          380 --DIVLAICASQNEGSAVSRLLSRIEVMNSLCKK---KTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPEY-MDR  449 (502)
Q Consensus       380 --~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~  449 (502)
                        ...+..+...|+.+.|.+.+............   ..+..+...+...|+.++|...+++....    |..++. .+.
T Consensus       655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~  734 (903)
T PRK04841        655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL  734 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence              11224445578899988887665432211111   11234666788899999999999988753    333322 233


Q ss_pred             HHHHHHHHccccccccHHHHHHHHhhh
Q 010739          450 VAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       450 ~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      ..+-.++..    .|+.++|...+.+.
T Consensus       735 ~~la~a~~~----~G~~~~A~~~L~~A  757 (903)
T PRK04841        735 ILLNQLYWQ----QGRKSEAQRVLLEA  757 (903)
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHH
Confidence            333333344    78888888777666

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.74  E-value=0.063  Score=54.04  Aligned_cols=301  Identities=16%  Similarity=0.070  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      |-.+..+.--.|.. ..|.++.++..+..  .|+...|.-....+- ...-.. +.|..+.|.+-+..-... +.-....
T Consensus       146 w~~~Avs~~L~g~y-~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly-~n~i~~-E~g~~q~ale~L~~~e~~-i~Dkla~  221 (700)
T KOG1156|consen  146 WIGFAVAQHLLGEY-KMALEILEEFEKTQNTSPSKEDYEHSELLLY-QNQILI-EAGSLQKALEHLLDNEKQ-IVDKLAF  221 (700)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHH-HHHHHH-HcccHHHHHHHHHhhhhH-HHHHHHH
Confidence            66677777777888 79999999998765  577777765554222 111122 577788888876654332 2222333


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH--HhCcHHHHHHHHHHHHHc---CCCCC
Q 010739          194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM--VEGKYVDAIKLVIHLRES---GLKPE  268 (502)
Q Consensus       194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~--~~g~~~~a~~~~~~m~~~---g~~p~  268 (502)
                      -.+--..+.+.+++++|..++..+..++  ||-..|..        ....++  ..+..+....+|....+.   .-.|-
T Consensus       222 ~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~--------~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~  291 (700)
T KOG1156|consen  222 EETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYE--------GLEKALGKIKDMLEALKALYAILSEKYPRHECPR  291 (700)
T ss_pred             hhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHH--------HHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence            4455667889999999999999999887  77776655        333333  233444344666665543   22222


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHH----HcC--------
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAI----QEG--------  335 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~----~~~--------  335 (502)
                      ....+ ++.+   . .-.+..-.++..+.+.|+.+-..    .+...|.. ...+-..++...+.    ..+        
T Consensus       292 Rlpls-vl~~---e-el~~~vdkyL~~~l~Kg~p~vf~----dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~  362 (700)
T KOG1156|consen  292 RLPLS-VLNG---E-ELKEIVDKYLRPLLSKGVPSVFK----DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG  362 (700)
T ss_pred             hccHH-HhCc---c-hhHHHHHHHHHHHhhcCCCchhh----hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence            22222 2222   1 11222223355557777654222    35555554 32222222221111    111        


Q ss_pred             -CCCchHhHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 010739          336 -GSSLYGVVH--ERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL-YDIVLAICASQNEGSAVSRLLSRIEVMNSLCKK  411 (502)
Q Consensus       336 -~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~  411 (502)
                       ..++....|  -.++..|-+.|+++.|...++....  -.|+.+- |-.=-..+...|+++.|...+++..+.+ .||+
T Consensus       363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR  439 (700)
T KOG1156|consen  363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADR  439 (700)
T ss_pred             ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhH
Confidence             113333444  4567778889999999999998874  3565443 3333378899999999999999998877 4566


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010739          412 KTLSWLLRGYIKGGHINDAAETLTKMLDLGL  442 (502)
Q Consensus       412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  442 (502)
                      ..=+--..-..+++++++|.++.....+.|.
T Consensus       440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  440 AINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            5544566677789999999999999988885

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.71  E-value=0.00044  Score=59.97  Aligned_cols=100  Identities=15%  Similarity=0.143  Sum_probs=69.2

Q ss_pred             hHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 010739          340 YGVVHERLLAMYIC-----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL  414 (502)
Q Consensus       340 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~  414 (502)
                      +-.+|..+|..|.+     .|.++-...-+..|.+-|+.-|..+|+.||+.+=+ |.+-                ....+
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n~f  108 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRNFF  108 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------cccHH
Confidence            34578888888876     36677777777788888888888888888877754 2221                11112


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          415 SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       415 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      -.+..-|  ..+.+-|++++++|.+.|+-||..|+..|++.+.+
T Consensus       109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~  150 (228)
T PF06239_consen  109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR  150 (228)
T ss_pred             HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence            2221112  23456789999999999999999999999999954

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.70  E-value=0.14  Score=56.93  Aligned_cols=302  Identities=11%  Similarity=-0.043  Sum_probs=168.5

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC---CccccccCCCCchHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA---EGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~---~~ty~~~~~~~~~~~~~~~  244 (502)
                      ..|+++.+..+++.+.......+..........+...|++++|..++++..+.--..+   ......   .........+
T Consensus       386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~---~~~~~~a~~~  462 (903)
T PRK04841        386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQA---EFNALRAQVA  462 (903)
T ss_pred             hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHH---HHHHHHHHHH
Confidence            4677777777777663321112222234445556788999999999988754311100   000000   0001122333


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhccccHHHHHHHHHHHHHcC--C-CCch--hchHHHHHHH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEV----YSYLIALTAVVKELNEFGKALRKLKGYVRAG--S-IAEL--DGKNLGLIEK  315 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g--~-~p~~--~~~~~~li~~  315 (502)
                      ...|++++|...+++....--..+.    ...+.+-..+... |++++|...+++.....  . .+..  .... .+-..
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~-~la~~  540 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLL-QQSEI  540 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHH-HHHHH
Confidence            4579999999999987653111121    2334444455566 79999999888774321  1 1111  1111 23334


Q ss_pred             Hhc-CcHHhHHHHHHHHHHc----CCC--CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 010739          316 YQS-DLLADGSRLSSWAIQE----GGS--SLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKEAD--GDLYDIVLA  384 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~li~  384 (502)
                      +.. |++++|...+++....    +..  ......+..+-..+...|++++|...+.+....  ...+.  ...+..+-.
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            555 9999999998775543    211  112234445555667789999999999887553  11222  233333446


Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHH
Q 010739          385 ICASQNEGSAVSRLLSRIEVMNSL-CKKKTL-----SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD---RVAVLQG  455 (502)
Q Consensus       385 ~~~~~~~~~~a~~l~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~  455 (502)
                      .....|+.+.|.+.++........ .....+     ...+..+...|+.+.|..++.............+   +..+..+
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~  700 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA  700 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence            777889999999988766442111 111111     1123455668999999999877554222111111   2233333


Q ss_pred             HHccccccccHHHHHHHHhhhhh
Q 010739          456 LRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       456 ~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      +..    .|+.++|...++....
T Consensus       701 ~~~----~g~~~~A~~~l~~al~  719 (903)
T PRK04841        701 QIL----LGQFDEAEIILEELNE  719 (903)
T ss_pred             HHH----cCCHHHHHHHHHHHHH
Confidence            344    6788888888777643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.68  E-value=0.0076  Score=65.34  Aligned_cols=192  Identities=10%  Similarity=0.045  Sum_probs=143.1

Q ss_pred             hCcHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-Cc
Q 010739          247 EGKYVDAIKLVIHLRESGLKPE-----VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DL  320 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~-----~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~  320 (502)
                      .++.++|.+++++.... +.+.     ...|.++++.-.-. |.-+...++|++..+.   -|+.+-...|...|.+ +.
T Consensus      1471 lsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~y-G~eesl~kVFeRAcqy---cd~~~V~~~L~~iy~k~ek 1545 (1710)
T KOG1070|consen 1471 LSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAY-GTEESLKKVFERACQY---CDAYTVHLKLLGIYEKSEK 1545 (1710)
T ss_pred             hhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhh-CcHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHhhc
Confidence            48999999999988765 3222     13455555555555 5566777777776443   2333323378888999 99


Q ss_pred             HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHH
Q 010739          321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD---GDLYDIVLAICASQNEGSAVSR  397 (502)
Q Consensus       321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~a~~  397 (502)
                      .++|.++++.|.+.-....  ..|...+..+.+..+-+.|..++.+..+.  -|-   .....-.+..-.+.|+.+++..
T Consensus      1546 ~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred             chhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence            9999999999988755333  49999999999999999999999987753  343   2223334455567899999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010739          398 LLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD  448 (502)
Q Consensus       398 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  448 (502)
                      +|+...... .--...|+..|+.=.++|+.+.+..+|++....++.|-..-
T Consensus      1622 lfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1622 LFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred             HHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence            999887654 22577999999999999999999999999999998876543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.079  Score=52.80  Aligned_cols=368  Identities=15%  Similarity=0.090  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhh
Q 010739           84 EEFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWV  162 (502)
Q Consensus        84 ~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~  162 (502)
                      +.+++|.....++. ..|+          .++.+..=+-++.+.+++ ++|+.+.+.-.....-+...   +=.+||.. 
T Consensus        26 ~e~e~a~k~~~Kil~~~pd----------d~~a~~cKvValIq~~ky-~~ALk~ikk~~~~~~~~~~~---fEKAYc~Y-   90 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPD----------DEDAIRCKVVALIQLDKY-EDALKLIKKNGALLVINSFF---FEKAYCEY-   90 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCC----------cHhhHhhhHhhhhhhhHH-HHHHHHHHhcchhhhcchhh---HHHHHHHH-
Confidence            33777776666655 2122          112244444556666677 67774443321110011111   24566632 


Q ss_pred             hhhhhhhccHhhHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC------------------
Q 010739          163 KKYIEEERGVGDVVDLLVDMDCVGLKPGF-SMIEKVISLYWEMEKKERAVLFVKAVLSRGIA------------------  223 (502)
Q Consensus       163 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~------------------  223 (502)
                           +.+..++|+..++     |..++. .+...=-..+-|.|++++|.++|+.+.+.+..                  
T Consensus        91 -----rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~  160 (652)
T KOG2376|consen   91 -----RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ  160 (652)
T ss_pred             -----HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence                 6677777777766     333322 24444445566777777777777777554432                  


Q ss_pred             ----------CCCccccccCCCCchHHHHHHHH---hCcHHHHHHHHHHHHHc-------------CCCCCHhHHH-HHH
Q 010739          224 ----------YAEGDGEGQQGGPTGYLAWKMMV---EGKYVDAIKLVIHLRES-------------GLKPEVYSYL-IAL  276 (502)
Q Consensus       224 ----------p~~~ty~~~~~~~~~~~~~~~~~---~g~~~~a~~~~~~m~~~-------------g~~p~~~ty~-~li  276 (502)
                                | ..||..        +....|+   .|++.+|+++++.-..-             +++-...+.. -+-
T Consensus       161 ~~~~q~v~~v~-e~syel--------~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla  231 (652)
T KOG2376|consen  161 VQLLQSVPEVP-EDSYEL--------LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA  231 (652)
T ss_pred             HHHHHhccCCC-cchHHH--------HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence                      1 223433        3333333   59999999999877221             1111111111 123


Q ss_pred             HHHHhccccHHHHHHHHHHHHHcCCCCc--hhchHHHHHHHHhcCcHH--hHHHHH------------------------
Q 010739          277 TAVVKELNEFGKALRKLKGYVRAGSIAE--LDGKNLGLIEKYQSDLLA--DGSRLS------------------------  328 (502)
Q Consensus       277 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~~li~~~~~g~~~--~a~~~~------------------------  328 (502)
                      -.+-.. |+.++|.+++...++....-.  ..+..+-|+.+-....+.  .++..+                        
T Consensus       232 yVlQ~~-Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~  310 (652)
T KOG2376|consen  232 YVLQLQ-GQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY  310 (652)
T ss_pred             HHHHHh-cchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            334444 789999998888865543211  111111233221111111  111111                        


Q ss_pred             ----------------HHHHHcCCCCch-HhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          329 ----------------SWAIQEGGSSLY-GVVHERLLAMYIC--AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       329 ----------------~~m~~~~~~~~~-~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                                      .+... ..|... ...+.+++....+  .....+|.+++...-+..-.-....--.++......
T Consensus       311 ~N~~lL~l~tnk~~q~r~~~a-~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~  389 (652)
T KOG2376|consen  311 RNNALLALFTNKMDQVRELSA-SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ  389 (652)
T ss_pred             HHHHHHHHHhhhHHHHHHHHH-hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence                            00000 111110 1344444444333  223455555555544321111123333444667778


Q ss_pred             CChhHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH---
Q 010739          390 NEGSAVSRLLS--------RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG--LYPEYMDRVAVLQGL---  456 (502)
Q Consensus       390 ~~~~~a~~l~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~---  456 (502)
                      |+++.|.+++.        .+.+.+..  ..+...+...|.+.++.+.|-.++++....-  -.+.......++.-.   
T Consensus       390 gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f  467 (652)
T KOG2376|consen  390 GNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF  467 (652)
T ss_pred             CCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence            88888888877        44444433  3445566666777777776777766654321  112222333333322   


Q ss_pred             -HccccccccHHHHHHHHhhhhhcC-C---chhHHHHHHHhh
Q 010739          457 -RKRIQQSGNVEAYLNLCKRLSDTS-L---IGPCLVYLYIKK  493 (502)
Q Consensus       457 -~~~~~~~~~~~~a~~~~~~m~~~~-~---~~~~li~~y~~~  493 (502)
                       .+    .|+.++|...++++.... -   +.-.+|.+|++.
T Consensus       468 ~lr----~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  468 KLR----HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHh----cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence             23    577888888887775522 1   333456666553

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.0036  Score=56.64  Aligned_cols=252  Identities=16%  Similarity=0.061  Sum_probs=144.4

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010739          122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLY  201 (502)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~  201 (502)
                      .+-+.+.+ -.|+.|...|....    ...+-.+. +-+..+-   ..+++..+..++++....|   +..+.+..-...
T Consensus        87 SLY~A~i~-ADALrV~~~~~D~~----~L~~~~lq-LqaAIkY---se~Dl~g~rsLveQlp~en---~Ad~~in~gCll  154 (459)
T KOG4340|consen   87 SLYKACIY-ADALRVAFLLLDNP----ALHSRVLQ-LQAAIKY---SEGDLPGSRSLVEQLPSEN---EADGQINLGCLL  154 (459)
T ss_pred             HHHHhccc-HHHHHHHHHhcCCH----HHHHHHHH-HHHHHhc---ccccCcchHHHHHhccCCC---ccchhccchhee
Confidence            44556677 57888777774432    22222222 1110110   4677777777777766432   333444444455


Q ss_pred             HhcCcHHHHHHHHHHHHHcC-CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC-------------C
Q 010739          202 WEMEKKERAVLFVKAVLSRG-IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK-------------P  267 (502)
Q Consensus       202 ~~~g~~~~A~~l~~~m~~~~-~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~-------------p  267 (502)
                      -+.|+.+.|.+-|+...+-+ ..|- ..||.         ..+....|++..|++...++.++|++             |
T Consensus       155 ykegqyEaAvqkFqaAlqvsGyqpl-lAYni---------ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi  224 (459)
T KOG4340|consen  155 YKEGQYEAAVQKFQAALQVSGYQPL-LAYNL---------ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI  224 (459)
T ss_pred             eccccHHHHHHHHHHHHhhcCCCch-hHHHH---------HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence            68888888888888776544 4433 23333         44555578888898888888877653             2


Q ss_pred             CHh----H----HHHHHHHH-------HhccccHHHHHHHHHHH-HHcCCCCchhchH-HHHHHHHhcCcHHhHHHHHHH
Q 010739          268 EVY----S----YLIALTAV-------VKELNEFGKALRKLKGY-VRAGSIAELDGKN-LGLIEKYQSDLLADGSRLSSW  330 (502)
Q Consensus       268 ~~~----t----y~~li~~~-------~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~-~~li~~~~~g~~~~a~~~~~~  330 (502)
                      |..    |    -+.++.++       .+. ++.+.|.+-+-+| .+...+.|++|.. .++.++=  ++..+..+-+.-
T Consensus       225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~-~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~--~~p~~g~~KLqF  301 (459)
T KOG4340|consen  225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQL-RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD--ARPTEGFEKLQF  301 (459)
T ss_pred             chhcccchHHHHHHHHHHHhhhhhhhhhhc-ccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc--CCccccHHHHHH
Confidence            221    1    12233332       333 6788888888888 5666666777743 3333332  445555554444


Q ss_pred             HHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739          331 AIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKE-ADGDLYDIVLAICASQNEGSAVSRLLS  400 (502)
Q Consensus       331 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~~~~~~a~~l~~  400 (502)
                      +.....-++  .||..++--||++.-++-|-+++.+=.....+ .+.+.|+.+=..-.-.-..+++.+-++
T Consensus       302 LL~~nPfP~--ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~  370 (459)
T KOG4340|consen  302 LLQQNPFPP--ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLD  370 (459)
T ss_pred             HHhcCCCCh--HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            455543333  49999999999999999999888764332221 234444433222223345566655444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.65  E-value=0.055  Score=52.72  Aligned_cols=238  Identities=18%  Similarity=0.132  Sum_probs=131.3

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHH---HcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCCCHH
Q 010739          119 VLVYFSQEGRDSWCALEVFEWLK---KEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKPGFS  192 (502)
Q Consensus       119 ll~~~~~~~~~~~~a~~~~~~m~---~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~  192 (502)
                      =|..+.+.|.....-.++|+.+.   ..+ .|..+.-+.    =.        ...++..+...-+.|+..+  -.|+..
T Consensus       208 Gi~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~TH----Pl--------p~~RIa~lr~ra~q~p~~~~~d~~~~~  275 (484)
T COG4783         208 GITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTH----PL--------PEERIADLRNRAEQSPPYNKLDSPDFQ  275 (484)
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcC----CC--------chhHHHHHHHHHHhCCCCCCCCCccHH
Confidence            35556667766455567777776   333 444432110    01        3456666666666665543  356666


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY  272 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty  272 (502)
                      .+...+.+......-..+..++..-.+.+ . ...-|.         ........|++++|+..++.+...  .||..-|
T Consensus       276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~-~aa~YG---------~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~  342 (484)
T COG4783         276 LARARIRAKYEALPNQQAADLLAKRSKRG-G-LAAQYG---------RALQTYLAGQYDEALKLLQPLIAA--QPDNPYY  342 (484)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHhCcc-c-hHHHHH---------HHHHHHHhcccchHHHHHHHHHHh--CCCCHHH
Confidence            77777776555444444444433332211 0 000010         223333457888888888876654  5555444


Q ss_pred             HH-HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739          273 LI-ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM  350 (502)
Q Consensus       273 ~~-li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  350 (502)
                      .. ....+.+. ++..+|.+.++.+...  .|+.......+-.+|.+ |+..+|.+++++........++  .|..|-.+
T Consensus       343 ~~~~~~i~~~~-nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~--~w~~LAqa  417 (484)
T COG4783         343 LELAGDILLEA-NKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQA  417 (484)
T ss_pred             HHHHHHHHHHc-CChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch--HHHHHHHH
Confidence            44 44455556 7777777777776443  44433333345556667 7777777777665555444444  77777777


Q ss_pred             HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          351 YICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       351 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      |...|+..+|..-..++                  +...|+++.|...+...++
T Consensus       418 y~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         418 YAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             HHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence            77777766666544443                  3445666666666554443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.65  E-value=0.1  Score=53.95  Aligned_cols=54  Identities=19%  Similarity=0.158  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhhhh
Q 010739          443 YPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       443 ~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~~  500 (502)
                      .|+..+-.-++.-...-..+.|..+.|-+.|.+..++-    .-+.++.|.|+.+.|+
T Consensus      1138 ~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl----~AMraLLKSGdt~KI~ 1191 (1416)
T KOG3617|consen 1138 MPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL----SAMRALLKSGDTQKIR 1191 (1416)
T ss_pred             CccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH----HHHHHHHhcCCcceEE
Confidence            35555555555444322233899999999987776543    3456677888877653

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.066  Score=56.57  Aligned_cols=338  Identities=16%  Similarity=0.141  Sum_probs=181.3

Q ss_pred             ChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC-C--CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCC
Q 010739          112 SARELQLVLVYFSQEGRDSWCALEVFEWLKKEN-R--VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLK  188 (502)
Q Consensus       112 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~--~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~  188 (502)
                      .|...+..+.++...+.. .+-.++++++.-.. .  -+...-|.+|-.+.         ..+-..+.++.+++...+. 
T Consensus       983 dPe~vS~tVkAfMtadLp-~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi---------kad~trVm~YI~rLdnyDa- 1051 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLP-NELIELLEKIVLDNSVFSENRNLQNLLILTAI---------KADRTRVMEYINRLDNYDA- 1051 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCc-HHHHHHHHHHhcCCcccccchhhhhhHHHHHh---------hcChHHHHHHHHHhccCCc-
Confidence            366688899999999999 78999998887554 1  13334444444232         2334444444444443321 


Q ss_pred             CCH-------HHHHHHHHHHHh--------------cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          189 PGF-------SMIEKVISLYWE--------------MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       189 p~~-------~~y~~li~~~~~--------------~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      |++       ..|.-....|-+              -+.++.|.++-+...+              ..+++-+..+-+..
T Consensus      1052 ~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~--------------p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNE--------------PAVWSQLAKAQLQG 1117 (1666)
T ss_pred             hhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCC--------------hHHHHHHHHHHHhc
Confidence            221       111111112222              2233333333222211              11222244444445


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      |.+.+|++-|-+      .-|+..|.-+++...+. |.+++-.+.+.--.+..-+|...+   .||-+|++ +++.+.++
T Consensus      1118 ~~v~dAieSyik------adDps~y~eVi~~a~~~-~~~edLv~yL~MaRkk~~E~~id~---eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK------ADDPSNYLEVIDVASRT-GKYEDLVKYLLMARKKVREPYIDS---ELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred             CchHHHHHHHHh------cCCcHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhcCccchH---HHHHHHHHhchHHHHHH
Confidence            777888776543      23778899999999999 899999996633377888888886   79999999 99998888


Q ss_pred             HHH------------HHHHcCC------CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010739          327 LSS------------WAIQEGG------SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS  388 (502)
Q Consensus       327 ~~~------------~m~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~  388 (502)
                      +..            +.-+.++      -..++.-|..|-..+...|+++.|.+--++.      -+..||--+-.+|..
T Consensus      1188 fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1188 FIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVD 1261 (1666)
T ss_pred             HhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhc
Confidence            651            0000000      0001112333333344444444444333221      244566666666655


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccccccccHH
Q 010739          389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY-PEYMDRVAVLQGLRKRIQQSGNVE  467 (502)
Q Consensus       389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~  467 (502)
                      .+.+..|     .|...++.....-..-+|.-|-..|.+++-..+++.-+  |++ ...-.|+-|---|.+ .+ -.+.-
T Consensus      1262 ~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk-yk-p~km~ 1332 (1666)
T KOG0985|consen 1262 KEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK-YK-PEKMM 1332 (1666)
T ss_pred             hhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh-cC-HHHHH
Confidence            4444332     23333344455666779999999999999888887632  332 333444444444432 00 12233


Q ss_pred             HHHHHHhhh---------hhcCCchhHHHHHHHhhcchhhh
Q 010739          468 AYLNLCKRL---------SDTSLIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       468 ~a~~~~~~m---------~~~~~~~~~li~~y~~~g~~~~~  499 (502)
                      +-+++|..-         .+...++.-|+-.|.+-...+.+
T Consensus      1333 EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1333 EHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            333333211         22222566677777766555543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.57  E-value=0.019  Score=52.45  Aligned_cols=55  Identities=16%  Similarity=0.134  Sum_probs=24.9

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739          419 RGYIKGGHINDAAETLTKMLDLGL-YP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       419 ~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~  477 (502)
                      ..|.+.|+.++|...+++..+..- .| ....+..+..++.+    .|+.++|...++.+.
T Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~----lg~~~~A~~~~~~l~  230 (235)
T TIGR03302       174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK----LGLKDLAQDAAAVLG  230 (235)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            334555555555555555444321 11 22334444444444    455555555554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.51  E-value=0.04  Score=56.16  Aligned_cols=228  Identities=14%  Similarity=0.068  Sum_probs=161.4

Q ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHH
Q 010739          118 LVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKV  197 (502)
Q Consensus       118 ~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~l  197 (502)
                      .+-..+..-|-. ..|+.+|+..        ..|.-+|-+|+        ..|+-++|..+..+-.+  -+||...|..+
T Consensus       403 ~laell~slGit-ksAl~I~Erl--------emw~~vi~CY~--------~lg~~~kaeei~~q~le--k~~d~~lyc~L  463 (777)
T KOG1128|consen  403 LLAELLLSLGIT-KSALVIFERL--------EMWDPVILCYL--------LLGQHGKAEEINRQELE--KDPDPRLYCLL  463 (777)
T ss_pred             HHHHHHHHcchH-HHHHHHHHhH--------HHHHHHHHHHH--------HhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence            344556667778 7999998877        44566677788        78888888888877666  56899999999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc-CCCCCHhHHHHHH
Q 010739          198 ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES-GLKPEVYSYLIAL  276 (502)
Q Consensus       198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~li  276 (502)
                      .+..-..--+++|.++++....+- +    -          .+..-...+++++++.+.|+.-.+. .+  -..||-..=
T Consensus       464 GDv~~d~s~yEkawElsn~~sarA-~----r----------~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G  526 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISARA-Q----R----------SLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLG  526 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHHH-H----H----------hhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhcc
Confidence            998888888999999998765441 0    0          0111122368999999999864443 22  234555555


Q ss_pred             HHHHhccccHHHHHHHHHHHHHcCCCCchhc-hHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739          277 TAVVKELNEFGKALRKLKGYVRAGSIAELDG-KNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA  354 (502)
Q Consensus       277 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  354 (502)
                      .+..+. +++..|.+.|+..+.  .+||... || .+-.+|.+ ++-.+|.+.+.+..+-...+..  .|-..+....+.
T Consensus       527 ~~ALql-ek~q~av~aF~rcvt--L~Pd~~eaWn-Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~--iWENymlvsvdv  600 (777)
T KOG1128|consen  527 CAALQL-EKEQAAVKAFHRCVT--LEPDNAEAWN-NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ--IWENYMLVSVDV  600 (777)
T ss_pred             HHHHHH-hhhHHHHHHHHHHhh--cCCCchhhhh-hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe--eeechhhhhhhc
Confidence            555566 788899888877653  4676554 55 58889999 9999999999988877755544  888888889999


Q ss_pred             CChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 010739          355 GRGLEAERQLWEMKLVGK-EADGDLYDIVLAICA  387 (502)
Q Consensus       355 g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~  387 (502)
                      |.+++|++.+.+|..... .-|......++....
T Consensus       601 ge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  601 GEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             ccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            999999999998765421 124444444444333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.49  E-value=0.017  Score=52.74  Aligned_cols=169  Identities=10%  Similarity=-0.021  Sum_probs=117.6

Q ss_pred             CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch-HhH
Q 010739          268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY-GVV  343 (502)
Q Consensus       268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~-~~~  343 (502)
                      ....+-.....+.+. +++++|...+++..+.. -.|.. ..+. .+-..|.+ |++++|...++++.......+. ...
T Consensus        32 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~a~~-~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDS-GDYTEAIKYFEALESRYPFSPYAEQAQL-DLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchhHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            345667777788888 79999999999884432 22221 1222 35566777 9999999999998876643333 123


Q ss_pred             HHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHH-----------------HHHHHHHhcCChhHHHH
Q 010739          344 HERLLAMYICA--------GRGLEAERQLWEMKLVGKEADGD-LYD-----------------IVLAICASQNEGSAVSR  397 (502)
Q Consensus       344 ~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~-----------------~li~~~~~~~~~~~a~~  397 (502)
                      +..+-.++.+.        |+.++|.+.|++....  .|+.. .+.                 .+-..+.+.|+.++|..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~  187 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN  187 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            44444445544        7889999999998865  34432 111                 22356778899999999


Q ss_pred             HHHHHHHcCC-CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          398 LLSRIEVMNS-LC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       398 l~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      .++....... .| ....+..+...+.+.|+.++|...++.+...
T Consensus       188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9987765431 23 3567888999999999999999999988654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.49  E-value=0.0088  Score=58.30  Aligned_cols=123  Identities=23%  Similarity=0.162  Sum_probs=88.8

Q ss_pred             chHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHH
Q 010739          237 TGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGL  312 (502)
Q Consensus       237 ~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~l  312 (502)
                      .++++.+++.    .++++.|+++|+++.+..  |+..  ..+...+... ++-.+|.+++++..+.. ..+..... .-
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~-~~E~~AI~ll~~aL~~~-p~d~~LL~-~Q  240 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLM-NEEVEAIRLLNEALKEN-PQDSELLN-LQ  240 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhc-CcHHHHHHHHHHHHHhC-CCCHHHHH-HH
Confidence            3455555554    589999999999999874  6544  3467777777 67889999999886331 11222211 12


Q ss_pred             HHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          313 IEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       313 i~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      ...+.+ ++.+.|+++.++++......  ..+|..|..+|.+.|++++|+..++.+-
T Consensus       241 a~fLl~k~~~~lAL~iAk~av~lsP~~--f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  241 AEFLLSKKKYELALEIAKKAVELSPSE--FETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            233656 99999999998888765444  3499999999999999999998888765

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.41  E-value=0.08  Score=56.84  Aligned_cols=247  Identities=11%  Similarity=0.022  Sum_probs=140.8

Q ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH--HHhCcHHHHHHHHHHHHHcCCC
Q 010739          189 PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM--MVEGKYVDAIKLVIHLRESGLK  266 (502)
Q Consensus       189 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~m~~~g~~  266 (502)
                      .+...+-.|+..|.+.+++++|.++.++-.+.  .|+...+-         ...+.  ...++..++..+          
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~y---------y~~G~l~~q~~~~~~~~lv----------   87 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISAL---------YISGILSLSRRPLNDSNLL----------   87 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehH---------HHHHHHHHhhcchhhhhhh----------
Confidence            35678889999999999999999999855444  35543221         12222  123443333333          


Q ss_pred             CCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739          267 PEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE  345 (502)
Q Consensus       267 p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~  345 (502)
                             .++..+... .++.-...+...|.+.+-... ..+  .+-.+|.+ |+.++|..+++++.+..  +.|..+.|
T Consensus        88 -------~~l~~~~~~-~~~~~ve~~~~~i~~~~~~k~-Al~--~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLN  154 (906)
T PRK14720         88 -------NLIDSFSQN-LKWAIVEHICDKILLYGENKL-ALR--TLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVK  154 (906)
T ss_pred             -------hhhhhcccc-cchhHHHHHHHHHHhhhhhhH-HHH--HHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHH
Confidence                   222233333 233222222223333222111 111  36666777 88888888888777766  33455777


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HH--HhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLA---IC--ASQNEGSAVSRLLSRIEVM-NSLCKKKTLSWLLR  419 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~---~~--~~~~~~~~a~~l~~~m~~~-~~~p~~~~~~~li~  419 (502)
                      .+-..|... ++++|..++.+....-+  +..-|+.+..   -+  +...+++.-.++.+.+... +..--..++-.+-.
T Consensus       155 n~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~  231 (906)
T PRK14720        155 KLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE  231 (906)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence            777777777 88888877776654311  1111222221   11  1112333333333333322 33334556666778


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHH
Q 010739          420 GYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLC  473 (502)
Q Consensus       420 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~  473 (502)
                      .|-..++++++..+|+..++..- -|.....-++..|.+.....-.+++++++-
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s  284 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYKEKYKDHSLLEDYLKMS  284 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHccCcchHHHHHHHh
Confidence            88889999999999999988653 366677788888865555566677777763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.38  E-value=0.11  Score=55.01  Aligned_cols=129  Identities=7%  Similarity=-0.036  Sum_probs=73.6

Q ss_pred             hCcHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739          247 EGKYVDAIKLVIHLRESGLKPEV-YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a  324 (502)
                      .|++++|..+++...+.  .||- .....+...+.+. +++++|+..+++....  .|+.......+-..+.+ |++++|
T Consensus        99 ~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~~A  173 (694)
T PRK15179         99 AHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQ-QGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSEQA  173 (694)
T ss_pred             cCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchHHH
Confidence            47777777777766643  5554 3444556666666 5677776666665433  45544443223333555 777777


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL  383 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li  383 (502)
                      ..+|++....+...  ...+...-.++-+.|+.++|...|++..+. ..|...-|+..+
T Consensus       174 ~~~y~~~~~~~p~~--~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~  229 (694)
T PRK15179        174 DACFERLSRQHPEF--ENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence            77777766633222  236666666666677777777777766543 223334444443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.37  E-value=0.2  Score=50.58  Aligned_cols=179  Identities=14%  Similarity=0.088  Sum_probs=88.7

Q ss_pred             hhhHHHHHHHHHHHhhcCChHHHHHH-------------Hh---cccC----hhhHHHHHHHHHHcCCChHHHHHHHHHH
Q 010739           81 EMSEEFFEAIEELERMTREPSDILEE-------------MN---DRLS----ARELQLVLVYFSQEGRDSWCALEVFEWL  140 (502)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~---~~~~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m  140 (502)
                      .++..+++++-.+..|.+---+-++-             ..   ..+.    .+.|...|.....++.. +.++.+++..
T Consensus        86 ~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP-ets~rvyrRY  164 (835)
T KOG2047|consen   86 SVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP-ETSIRVYRRY  164 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh-HHHHHHHHHH
Confidence            45677888888888876211111111             00   1111    12266667777777777 6777777766


Q ss_pred             HHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC-----CCCH-HHHHHHHHHHHhcCcHH---HHH
Q 010739          141 KKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL-----KPGF-SMIEKVISLYWEMEKKE---RAV  211 (502)
Q Consensus       141 ~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~-~~y~~li~~~~~~g~~~---~A~  211 (502)
                      .+-.   +..-+-.|..++        ..+++++|.+.+........     .++. ..|+-+-+..++.-+.-   .+.
T Consensus       165 Lk~~---P~~~eeyie~L~--------~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvd  233 (835)
T KOG2047|consen  165 LKVA---PEAREEYIEYLA--------KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVD  233 (835)
T ss_pred             HhcC---HHHHHHHHHHHH--------hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHH
Confidence            6554   222444455555        67777777777766554321     1111 12233333333322211   112


Q ss_pred             HHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 010739          212 LFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVK  281 (502)
Q Consensus       212 ~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~  281 (502)
                      .++..+..        -|+.+-|..+..+..-+.+.|++++|.++|++-...-  .+..-|+.+.++|+.
T Consensus       234 aiiR~gi~--------rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~  293 (835)
T KOG2047|consen  234 AIIRGGIR--------RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ  293 (835)
T ss_pred             HHHHhhcc--------cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence            22222211        1111223333334555556799999999998866542  233344445555443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.32  E-value=0.012  Score=48.39  Aligned_cols=111  Identities=11%  Similarity=0.000  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      .....+...+.+.|++++|.+.|+.....+ ..+...+..+-..+...|++++|...++.....+ ..+...+..+-..|
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            355566677777888888888888876643 2245566666677778888888888887766554 33566777777788


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          422 IKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       422 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      ...|+.++|...|++..+.  .|+...+..+...+
T Consensus        96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~  128 (135)
T TIGR02552        96 LALGEPESALKALDLAIEI--CGENPEYSELKERA  128 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHh--ccccchHHHHHHHH
Confidence            8889999999988887764  36655554444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.28  E-value=0.046  Score=55.66  Aligned_cols=187  Identities=14%  Similarity=0.108  Sum_probs=114.2

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      ..+.|.+|+.+++.+......  ..-|.-+-+.|+..|+++.|+++|-+-   +..-|              .+.-+.++
T Consensus       744 ~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---~~~~d--------------ai~my~k~  804 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---DLFKD--------------AIDMYGKA  804 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---chhHH--------------HHHHHhcc
Confidence            467778888887776655432  234777778888888888888888643   22222              56667778


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      |+|+.|.++-.+..  |-......|-+--.-+-+. |++.+|.+++-..   | .|+      .-|.+|.+ |..++..+
T Consensus       805 ~kw~da~kla~e~~--~~e~t~~~yiakaedldeh-gkf~eaeqlyiti---~-~p~------~aiqmydk~~~~ddmir  871 (1636)
T KOG3616|consen  805 GKWEDAFKLAEECH--GPEATISLYIAKAEDLDEH-GKFAEAEQLYITI---G-EPD------KAIQMYDKHGLDDDMIR  871 (1636)
T ss_pred             ccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhh-cchhhhhheeEEc---c-Cch------HHHHHHHhhCcchHHHH
Confidence            88888888765443  4444455555555555555 6677776654221   1 121      46777888 88888888


Q ss_pred             HHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739          327 LSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL  399 (502)
Q Consensus       327 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~  399 (502)
                      +.++-.-+-+.  +  |...+-.-|-..|++..|+.-|-+..         -|.+.+..|..++.+++|.++-
T Consensus       872 lv~k~h~d~l~--d--t~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  872 LVEKHHGDHLH--D--THKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             HHHHhChhhhh--H--HHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence            76542211111  2  55555666666777777777665433         3455555666666666665543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.26  E-value=0.22  Score=48.55  Aligned_cols=335  Identities=12%  Similarity=-0.029  Sum_probs=215.6

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCC---CCH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLK---PGF  191 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~---p~~  191 (502)
                      .|+..|..=.+.+.. +.|.++++...-.. |++.+|--..+ +-       .+.|++..|..+++...+. +.   -+.
T Consensus       176 aW~sfI~fElRykei-eraR~IYerfV~~H-P~v~~wikyar-FE-------~k~g~~~~aR~VyerAie~-~~~d~~~e  244 (677)
T KOG1915|consen  176 AWLSFIKFELRYKEI-ERARSIYERFVLVH-PKVSNWIKYAR-FE-------EKHGNVALARSVYERAIEF-LGDDEEAE  244 (677)
T ss_pred             HHHHHHHHHHHhhHH-HHHHHHHHHHheec-ccHHHHHHHHH-HH-------HhcCcHHHHHHHHHHHHHH-hhhHHHHH
Confidence            399999999999999 89999999987655 88888765555 22       1889999999999876653 21   122


Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcH---HHHHHH-----HHH
Q 010739          192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKY---VDAIKL-----VIH  259 (502)
Q Consensus       192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~---~~a~~~-----~~~  259 (502)
                      ..+++.-..=.++..++.|.-+|+-..+.=  |...+-.         +-.++..    -|+.   ++++--     ++.
T Consensus       245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~--pk~raee---------L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~  313 (677)
T KOG1915|consen  245 ILFVAFAEFEERQKEYERARFIYKYALDHI--PKGRAEE---------LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK  313 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccHHH---------HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence            334444444446778888888888776543  2211100         1111111    1433   333221     222


Q ss_pred             HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-------hchHHHHHHH--Hhc---CcHHhHHHH
Q 010739          260 LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-------DGKNLGLIEK--YQS---DLLADGSRL  327 (502)
Q Consensus       260 m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~~li~~--~~~---g~~~~a~~~  327 (502)
                      +.+. -.-|-.+|--.++.--.. |+.+...++++.-+.. ++|-.       .+|  .-|+-  |..   .+.+.+.++
T Consensus       314 ~v~~-np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIan-vpp~~ekr~W~RYIY--LWinYalyeEle~ed~ertr~v  388 (677)
T KOG1915|consen  314 EVSK-NPYNYDSWFDYLRLEESV-GDKDRIRETYERAIAN-VPPASEKRYWRRYIY--LWINYALYEELEAEDVERTRQV  388 (677)
T ss_pred             HHHh-CCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHcc-CCchhHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHH
Confidence            2222 233445555566666666 6788888888776433 33311       122  11222  222   788888888


Q ss_pred             HHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739          328 SSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIE  403 (502)
Q Consensus       328 ~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~  403 (502)
                      |+.... -+|. ..+||.-+--.|++    ..++..|.+++....  |..|-..+|-..|..-.+.++++.+.++++...
T Consensus       389 yq~~l~-lIPH-kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  389 YQACLD-LIPH-KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHh-hcCc-ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            887776 3444 34788777777765    688889998888665  889999999999998889999999999999998


Q ss_pred             HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCch
Q 010739          404 VMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIG  483 (502)
Q Consensus       404 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~  483 (502)
                      +++. -|..+|.-.-..=...|+.|.|..+|+-.++.   |...+=..|..+|..==-..|..+.|..+++.+.+..-..
T Consensus       465 e~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~q---p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~  540 (677)
T KOG1915|consen  465 EFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQ---PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV  540 (677)
T ss_pred             hcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC---cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence            8873 25556655555556779999999999987765   3334444455555311111688888888888886655333


Q ss_pred             h
Q 010739          484 P  484 (502)
Q Consensus       484 ~  484 (502)
                      +
T Consensus       541 k  541 (677)
T KOG1915|consen  541 K  541 (677)
T ss_pred             h
Confidence            3

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.26  E-value=0.024  Score=50.12  Aligned_cols=130  Identities=12%  Similarity=0.099  Sum_probs=93.7

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCC--hhH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAI-CASQNE--GSA  394 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~-~~~~~~--~~~  394 (502)
                      ++.+++...++........  |...|..+-..|...|++++|...|++..+.  .| +...+..+-.+ +...|+  .++
T Consensus        53 ~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQ--NSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            4556666666655555433  4458999999999999999999999987754  45 44555555554 356676  489


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739          395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQG  455 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~  455 (502)
                      |.++++.....+.. +...+..+-..+.+.|++++|...|+++.+.. .|+..-+. +|.+
T Consensus       129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~  186 (198)
T PRK10370        129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES  186 (198)
T ss_pred             HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence            99999988877633 67788888889999999999999999988754 34444433 3344

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.039  Score=49.53  Aligned_cols=171  Identities=12%  Similarity=0.012  Sum_probs=98.7

Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHH
Q 010739          255 KLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQ  333 (502)
Q Consensus       255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~  333 (502)
                      ++.+++......-+...-..-...|++. +++++|++..+..  .++  +...   .=+..+.+ .+++-|.+.+++|.+
T Consensus        94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~-~~~deAl~~~~~~--~~l--E~~A---l~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   94 SLYELVADSTDGSNLIDLLLAAIIYMHD-GDFDEALKALHLG--ENL--EAAA---LNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHhhccchhHHHHHHhhHHhhcC-CChHHHHHHHhcc--chH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445555444444434434444556666 7888887766652  111  1111   11222444 677777777777665


Q ss_pred             cCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 010739          334 EGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC  409 (502)
Q Consensus       334 ~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p  409 (502)
                      ..    +..|.+-|-.+|.+    .+++.+|+-+|++|.+ ...|+..+.|-...++...|++++|..+++........ 
T Consensus       166 id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-  239 (299)
T KOG3081|consen  166 ID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-  239 (299)
T ss_pred             cc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence            42    22466656666655    4567788888888864 36777788888888888888888888888777655533 


Q ss_pred             CHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 010739          410 KKKTLSWLLRGYIKGGHI-NDAAETLTKMLD  439 (502)
Q Consensus       410 ~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~  439 (502)
                      +..+..-+|..-...|.. +-..+.+.+.+.
T Consensus       240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  240 DPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            344444444444444443 333445555544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.22  E-value=0.0067  Score=56.91  Aligned_cols=144  Identities=10%  Similarity=0.057  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      .+|..+++..-+. +..+.|..+|.+..+.+ +..++.... +++..++.++.+.|.++|+...+.-...  ...|...+
T Consensus         2 ~v~i~~m~~~~r~-~g~~~aR~vF~~a~~~~~~~~~vy~~~-A~~E~~~~~d~~~A~~Ife~glk~f~~~--~~~~~~Y~   77 (280)
T PF05843_consen    2 LVWIQYMRFMRRT-EGIEAARKVFKRARKDKRCTYHVYVAY-ALMEYYCNKDPKRARKIFERGLKKFPSD--PDFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCS-THHHHHH-HHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CChHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHCCCC--HHHHHHHH
Confidence            4677788888888 56888888888875432 344444443 4555555577777888888777653333  34777888


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      +-+.+.|+.+.|..+|++....  .|..    ..|...+.-=.+.|+++.+.++.+.+.+.  .|+......+++-|
T Consensus        78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred             HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence            8888888888888888887754  3333    47888888778888888888887766654  23434444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.22  E-value=0.054  Score=50.97  Aligned_cols=133  Identities=11%  Similarity=0.032  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CC
Q 010739          343 VHERLLAMYICA-GRGLEAERQLWEMKLV----GKEAD--GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL-----CK  410 (502)
Q Consensus       343 ~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~-----p~  410 (502)
                      ++..+-..|-.. |++++|.+.|++-.+.    | .+.  ..++..+...+.+.|++++|.++|+........     .+
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            444445555555 7788888877775432    3 111  234556667889999999999999877654322     12


Q ss_pred             HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739          411 KK-TLSWLLRGYIKGGHINDAAETLTKMLDL--GLYP--EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       411 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      .. .|-..+-++...|+...|.+.|++....  ++..  .......||+++-.  .....+..++.-|+.+..
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~--~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE--GDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT--T-CCCHHHHCHHHTTSS-
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHcccCc
Confidence            22 2222344556678999999999998754  3433  34567778888842  114456666666665544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.18  E-value=0.03  Score=46.73  Aligned_cols=123  Identities=15%  Similarity=0.027  Sum_probs=64.2

Q ss_pred             HHHHHhcCcHHhHHHHHHHHHHcCCCC-chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh
Q 010739          312 LIEKYQSDLLADGSRLSSWAIQEGGSS-LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGD--LYDIVLAICAS  388 (502)
Q Consensus       312 li~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~  388 (502)
                      ++..+..++...+...++.+....... ......-.+-..+...|++++|...|+......-.|+..  ..-.+-..+..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~   97 (145)
T PF09976_consen   18 ALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ   97 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence            333333455555555555555543222 111222223345556677777777777766655222211  12223356666


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                      .|++++|...++.....  ......+...-+.|.+.|+.++|...|++
T Consensus        98 ~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   98 QGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             cCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            67777777776553222  22333444466667777777777777764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.21  Score=46.69  Aligned_cols=85  Identities=15%  Similarity=0.068  Sum_probs=46.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHcccc
Q 010739          384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW-LLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVL-QGLRKRIQ  461 (502)
Q Consensus       384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~~~  461 (502)
                      .+.+..|+..+|+++|-.+....++ |..+|-. |.++|.+.|+++.|++++-+|   .-..+..+.--+| +-|-+   
T Consensus       401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk---  473 (557)
T KOG3785|consen  401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYK---  473 (557)
T ss_pred             HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHH---
Confidence            4555556666777776555444333 4555544 666777777777777666554   2223333333333 33334   


Q ss_pred             ccccHHHHHHHHhhh
Q 010739          462 QSGNVEAYLNLCKRL  476 (502)
Q Consensus       462 ~~~~~~~a~~~~~~m  476 (502)
                       .+.+.-|.+.|+.+
T Consensus       474 -~~eFyyaaKAFd~l  487 (557)
T KOG3785|consen  474 -ANEFYYAAKAFDEL  487 (557)
T ss_pred             -HHHHHHHHHhhhHH
Confidence             56666666666555

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.19  Score=45.26  Aligned_cols=150  Identities=10%  Similarity=0.000  Sum_probs=105.3

Q ss_pred             Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 010739          316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICA----SQN  390 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~----~~~  390 (502)
                      |.. |+.++|++....     ..  +....-.=+..+.+..+++-|...+++|.+-.   +..|.+-|-.++.    ..+
T Consensus       118 ~~~~~~~deAl~~~~~-----~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge  187 (299)
T KOG3081|consen  118 YMHDGDFDEALKALHL-----GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE  187 (299)
T ss_pred             hhcCCChHHHHHHHhc-----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence            777 999999997743     11  22234334455678889999999999998532   4556665555443    345


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHH
Q 010739          391 EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYL  470 (502)
Q Consensus       391 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~  470 (502)
                      .+..|.-+|++|.+. ..|+..+.+.+..++...|++++|..++++.+++.-+ +..|...++-.-..   .+.+.+...
T Consensus       188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~---~Gkd~~~~~  262 (299)
T KOG3081|consen  188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALH---LGKDAEVTE  262 (299)
T ss_pred             hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH---hCCChHHHH
Confidence            688999999999763 4689999999999999999999999999999887643 34444433333322   156666666


Q ss_pred             HHHhhhhhcC
Q 010739          471 NLCKRLSDTS  480 (502)
Q Consensus       471 ~~~~~m~~~~  480 (502)
                      +.+.++....
T Consensus       263 r~l~QLk~~~  272 (299)
T KOG3081|consen  263 RNLSQLKLSH  272 (299)
T ss_pred             HHHHHHHhcC
Confidence            6777776655

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.10  E-value=0.18  Score=52.38  Aligned_cols=243  Identities=14%  Similarity=0.085  Sum_probs=146.7

Q ss_pred             CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-CCC
Q 010739          145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR-GIA  223 (502)
Q Consensus       145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-~~~  223 (502)
                      .-|..|-..+++ +.-    .. ..|+.+.|.+-.+.++.      ..+|..|-++|.+..++|-|.--+..|... |..
T Consensus       723 ~Cd~~TRkaml~-FSf----yv-tiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR  790 (1416)
T KOG3617|consen  723 NCDESTRKAMLD-FSF----YV-TIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR  790 (1416)
T ss_pred             ccCHHHHHhhhc-eeE----EE-EeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH
Confidence            347777777776 320    11 57999999987665543      468999999999999998887777777632 211


Q ss_pred             --------CCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHH
Q 010739          224 --------YAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKG  295 (502)
Q Consensus       224 --------p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~  295 (502)
                              |+. +-        .-+.--...-|.+++|+.+|++-+..         . |++-+.+..|.+++|+++-+.
T Consensus       791 AlR~a~q~~~e-~e--------akvAvLAieLgMlEeA~~lYr~ckR~---------D-LlNKlyQs~g~w~eA~eiAE~  851 (1416)
T KOG3617|consen  791 ALRRAQQNGEE-DE--------AKVAVLAIELGMLEEALILYRQCKRY---------D-LLNKLYQSQGMWSEAFEIAET  851 (1416)
T ss_pred             HHHHHHhCCcc-hh--------hHHHHHHHHHhhHHHHHHHHHHHHHH---------H-HHHHHHHhcccHHHHHHHHhh
Confidence                    110 00        00122222348999999999987753         2 444444444889999886543


Q ss_pred             HHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHH----------HHHcCCC--------CchHhHHHHHHHHHH-HcC
Q 010739          296 YVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSW----------AIQEGGS--------SLYGVVHERLLAMYI-CAG  355 (502)
Q Consensus       296 m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~----------m~~~~~~--------~~~~~~~~~li~~~~-~~g  355 (502)
                      --+.-+.   .||.. --.-+.. ++++.|++.|++          |.....+        ..|...|.- -..|. ..|
T Consensus       852 ~DRiHLr---~Tyy~-yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~W-WgqYlES~G  926 (1416)
T KOG3617|consen  852 KDRIHLR---NTYYN-YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSW-WGQYLESVG  926 (1416)
T ss_pred             ccceehh---hhHHH-HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHH-HHHHHhccc
Confidence            2111111   12211 1122223 788888887743          1111111        011111111 11222 267


Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739          356 RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLT  435 (502)
Q Consensus       356 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~  435 (502)
                      +++.|+.+|+..+         -|-+++...|-+|+.++|-++-++-   |   |......|-+.|-..|++.+|..+|.
T Consensus       927 emdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  927 EMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             chHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            7788887777655         3566777778889999887765543   2   55566678999999999999999998


Q ss_pred             HHH
Q 010739          436 KML  438 (502)
Q Consensus       436 ~m~  438 (502)
                      +..
T Consensus       992 rAq  994 (1416)
T KOG3617|consen  992 RAQ  994 (1416)
T ss_pred             HHH
Confidence            753

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.39  Score=48.11  Aligned_cols=335  Identities=16%  Similarity=0.073  Sum_probs=174.2

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHH--
Q 010739          120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKV--  197 (502)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~l--  197 (502)
                      ++-+.+.+.+ ++|......+...+.-|...+..=+-++.        +.+++++|+.+.+.   .+   -..+++..  
T Consensus        19 ln~~~~~~e~-e~a~k~~~Kil~~~pdd~~a~~cKvValI--------q~~ky~~ALk~ikk---~~---~~~~~~~~~f   83 (652)
T KOG2376|consen   19 LNRHGKNGEY-EEAVKTANKILSIVPDDEDAIRCKVVALI--------QLDKYEDALKLIKK---NG---ALLVINSFFF   83 (652)
T ss_pred             HHHhccchHH-HHHHHHHHHHHhcCCCcHhhHhhhHhhhh--------hhhHHHHHHHHHHh---cc---hhhhcchhhH
Confidence            4455666777 78888889888887335555655555577        88999999965542   22   11233333  


Q ss_pred             HHHHH--hcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739          198 ISLYW--EMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLI  274 (502)
Q Consensus       198 i~~~~--~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~  274 (502)
                      =.+||  +.++.|+|...++     |..++.. +-        .+-.--+.+.|++++|+++|+.+.+.+.    ..+..
T Consensus        84 EKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll--------~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~  146 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLK-----GLDRLDDKLL--------ELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDE  146 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHh-----cccccchHHH--------HHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHH
Confidence            55665  6889999999988     3222211 00        0123334557999999999999977633    22333


Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH--Hhc-CcHHhHHHHHHHHHHcC--------CCCchH--
Q 010739          275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK--YQS-DLLADGSRLSSWAIQEG--------GSSLYG--  341 (502)
Q Consensus       275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~--~~~-g~~~~a~~~~~~m~~~~--------~~~~~~--  341 (502)
                      -+.+=+.+   ...+... ..+......| ..+|....=.+  +.. |++.+|+++++.....+        ....+.  
T Consensus       147 ~~r~nl~a---~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~  221 (652)
T KOG2376|consen  147 ERRANLLA---VAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE  221 (652)
T ss_pred             HHHHHHHH---HHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH
Confidence            33322222   1111110 1122333344 22333222222  444 99999999887762211        111111  


Q ss_pred             ---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChh-HHHHHHH-------------
Q 010739          342 ---VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGS-AVSRLLS-------------  400 (502)
Q Consensus       342 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~-~a~~l~~-------------  400 (502)
                         .+---|--.+-..|+.++|..++........ +|.    +.-|.++..-....-.+ .+...++             
T Consensus       222 el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~  300 (652)
T KOG2376|consen  222 ELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSK  300 (652)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHH
Confidence               1111233345558999999999988877643 232    12222222111111111 0000000             


Q ss_pred             ------------------------HHHH--cCCCCC--HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCCCCH--HH
Q 010739          401 ------------------------RIEV--MNSLCK--KKTLSWLLRGYI--KGGHINDAAETLTKMLDLGLYPEY--MD  448 (502)
Q Consensus       401 ------------------------~m~~--~~~~p~--~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t  448 (502)
                                              ..++  ....+.  ...+.+++....  +.....+|.+++...-+..  |+-  ..
T Consensus       301 Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v  378 (652)
T KOG2376|consen  301 LSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVV  378 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHH
Confidence                                    0011  111111  234444544433  2234677777777755443  433  33


Q ss_pred             HHHHHHHHHccccccccHHHHHHHHh--------hhhhcCC---chhHHHHHHHhhcchhh
Q 010739          449 RVAVLQGLRKRIQQSGNVEAYLNLCK--------RLSDTSL---IGPCLVYLYIKKYKLWI  498 (502)
Q Consensus       449 ~~~ll~~~~~~~~~~~~~~~a~~~~~--------~m~~~~~---~~~~li~~y~~~g~~~~  498 (502)
                      .-+.+.-...    .|+++.|++++.        .+.+-++   +..+++.+|.+.++-+.
T Consensus       379 ~L~~aQl~is----~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~  435 (652)
T KOG2376|consen  379 LLLRAQLKIS----QGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS  435 (652)
T ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence            3333333445    799999999988        4433332   55577888888776543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.06  E-value=0.02  Score=47.03  Aligned_cols=92  Identities=11%  Similarity=-0.064  Sum_probs=60.3

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMV  246 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~  246 (502)
                      ..|+.++|...|+.....+ +.+...|..+-..|.+.|++++|...+++..+.+  |+ ...+..        +...+..
T Consensus        29 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~--------la~~~~~   97 (135)
T TIGR02552        29 QQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFH--------AAECLLA   97 (135)
T ss_pred             HcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHH--------HHHHHHH
Confidence            6788888888888776653 3366777777778888888888888887766554  22 122211        3445555


Q ss_pred             hCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739          247 EGKYVDAIKLVIHLRESGLKPEVYSY  272 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~~~ty  272 (502)
                      .|++++|.+.|+...+.  .|+...+
T Consensus        98 ~g~~~~A~~~~~~al~~--~p~~~~~  121 (135)
T TIGR02552        98 LGEPESALKALDLAIEI--CGENPEY  121 (135)
T ss_pred             cCCHHHHHHHHHHHHHh--ccccchH
Confidence            68888888877766654  4554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.05  E-value=0.042  Score=49.16  Aligned_cols=154  Identities=13%  Similarity=0.048  Sum_probs=111.2

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL  200 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~  200 (502)
                      ..+.-.|+. +..+.+..........|....+.......        +.|++.+|...|.+.... -++|..+||.+--+
T Consensus        74 ~a~~~~G~a-~~~l~~~~~~~~~~~~d~~ll~~~gk~~~--------~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa  143 (257)
T COG5010          74 TALYLRGDA-DSSLAVLQKSAIAYPKDRELLAAQGKNQI--------RNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA  143 (257)
T ss_pred             HHHHhcccc-cchHHHHhhhhccCcccHHHHHHHHHHHH--------HhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence            344445555 55555555544333457777777777777        899999999999998764 66799999999999


Q ss_pred             HHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010739          201 YWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV  279 (502)
Q Consensus       201 ~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~  279 (502)
                      |-+.|++++|..-|.+..+-.  |+. ..+|.        +...++..|+.+.|..++..-...+-. |...-..+....
T Consensus       144 ldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nN--------lgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~  212 (257)
T COG5010         144 LDQLGRFDEARRAYRQALELA--PNEPSIANN--------LGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVV  212 (257)
T ss_pred             HHHccChhHHHHHHHHHHHhc--cCCchhhhh--------HHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHH
Confidence            999999999999998876543  222 12222        666777789999999999988776443 444456666777


Q ss_pred             HhccccHHHHHHHHHHH
Q 010739          280 VKELNEFGKALRKLKGY  296 (502)
Q Consensus       280 ~~~~~~~~~a~~~~~~m  296 (502)
                      ... |++++|..+...-
T Consensus       213 ~~~-g~~~~A~~i~~~e  228 (257)
T COG5010         213 GLQ-GDFREAEDIAVQE  228 (257)
T ss_pred             hhc-CChHHHHhhcccc
Confidence            777 7899997765443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.04  E-value=0.27  Score=52.95  Aligned_cols=126  Identities=14%  Similarity=0.037  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHH--------------
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDL--------------  178 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~--------------  178 (502)
                      .+..|+..+...+++ +.|.++.+.-.+..  .+....|..+|.  .        ..++.+.+..+              
T Consensus        33 a~~~Li~~~~~~~~~-deai~i~~~~l~~~P~~i~~yy~~G~l~--~--------q~~~~~~~~lv~~l~~~~~~~~~~~  101 (906)
T PRK14720         33 ELDDLIDAYKSENLT-DEAKDICEEHLKEHKKSISALYISGILS--L--------SRRPLNDSNLLNLIDSFSQNLKWAI  101 (906)
T ss_pred             HHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCcceehHHHHHHHH--H--------hhcchhhhhhhhhhhhcccccchhH
Confidence            388999999999999 89999998666554  334444444433  1        23333333333              


Q ss_pred             ----HHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739          179 ----LVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI  254 (502)
Q Consensus       179 ----~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~  254 (502)
                          ...|...+  -+-..+-.+..+|-+.|+.++|..++++..+.+ .-|....|.        +.+.+... +.++|.
T Consensus       102 ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn--------~AY~~ae~-dL~KA~  169 (906)
T PRK14720        102 VEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKK--------LATSYEEE-DKEKAI  169 (906)
T ss_pred             HHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHH--------HHHHHHHh-hHHHHH
Confidence                22222211  122466667777788888888888888888776 222222222        66666666 888888


Q ss_pred             HHHHHHHHc
Q 010739          255 KLVIHLRES  263 (502)
Q Consensus       255 ~~~~~m~~~  263 (502)
                      +++.+-...
T Consensus       170 ~m~~KAV~~  178 (906)
T PRK14720        170 TYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHH
Confidence            887765544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.01  E-value=0.017  Score=48.14  Aligned_cols=99  Identities=9%  Similarity=-0.069  Sum_probs=83.1

Q ss_pred             hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739          113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS  192 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  192 (502)
                      |+.+...-..+.+.|++ +.|...|+........+...|..+-..+.        ..|++++|...|+...+.. +.+..
T Consensus        24 p~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~--------~~g~~~~A~~~y~~Al~l~-p~~~~   93 (144)
T PRK15359         24 PETVYASGYASWQEGDY-SRAVIDFSWLVMAQPWSWRAHIALAGTWM--------MLKEYTTAINFYGHALMLD-ASHPE   93 (144)
T ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCcH
Confidence            33444566778899999 89999999998887557888888777666        8999999999999998853 34778


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .+..+-.++.+.|+.++|...|+...+..
T Consensus        94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         94 PVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999987654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.00  E-value=0.03  Score=54.71  Aligned_cols=118  Identities=10%  Similarity=-0.031  Sum_probs=62.7

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                      ++..+... +.++.|.++++++.+..  |+...   .|...+.. ++-.+|.+++.+.......  +....+.-...|.+
T Consensus       175 Ll~~l~~t-~~~~~ai~lle~L~~~~--pev~~---~LA~v~l~~~~E~~AI~ll~~aL~~~p~--d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  175 LLKYLSLT-QRYDEAIELLEKLRERD--PEVAV---LLARVYLLMNEEVEAIRLLNEALKENPQ--DSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHhhc-ccHHHHHHHHHHHHhcC--CcHHH---HHHHHHHhcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHh
Confidence            34444444 56777777777765443  44332   34444544 5566666666655533222  22344444444555


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          354 AGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       354 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      .++.+.|+.+.+++.+  ..|+.. +|..|..+|...|+++.|...++.+
T Consensus       247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            6666666666666553  344333 5555556666666666665555443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.97  E-value=0.12  Score=51.08  Aligned_cols=175  Identities=12%  Similarity=0.017  Sum_probs=125.2

Q ss_pred             cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhcCcHHhHHHH
Q 010739          249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQSDLLADGSRL  327 (502)
Q Consensus       249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~g~~~~a~~~  327 (502)
                      +.+...+++++....-..--+-+|...|+..-+. ..+..|..+|.+..+.+..+ ++++++ +++..|+.++.+-|.++
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~-eGlkaaR~iF~kaR~~~r~~hhVfVa~-A~mEy~cskD~~~AfrI  423 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA-EGLKAARKIFKKAREDKRTRHHVFVAA-ALMEYYCSKDKETAFRI  423 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh-hhHHHHHHHHHHHhhccCCcchhhHHH-HHHHHHhcCChhHHHHH
Confidence            3566667777776653222345677888888888 56999999999997777777 777776 89999999999999999


Q ss_pred             HHHH-HHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          328 SSWA-IQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       328 ~~~m-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      |+-= ...|..+   .--+..+.-+...++-..|..+|++....++.||.  ..|..+|+-=+.-|++..+.++-+.+..
T Consensus       424 FeLGLkkf~d~p---~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  424 FELGLKKFGDSP---EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHhcCCCh---HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            9753 3333322   23455677777888889999999999988776654  6799999988999999998888765532


Q ss_pred             -cC--CCCCHHHHHHHHHHHHhCCCHH
Q 010739          405 -MN--SLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       405 -~~--~~p~~~~~~~li~~~~~~g~~~  428 (502)
                       +.  ..+...+-..+++-|.-.+...
T Consensus       501 af~~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  501 AFPADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             hcchhhcCCCChHHHHHHHHhhccccc
Confidence             22  3333344445666666655543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.96  E-value=0.21  Score=52.86  Aligned_cols=139  Identities=8%  Similarity=-0.102  Sum_probs=106.8

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhc
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL-AICASQ  389 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~  389 (502)
                      |-..-.. |+.++|+.+++...+....  +...+..+...+.+.+++++|+..+++...  ..|+..+.-.+. .++...
T Consensus        92 La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~  167 (694)
T PRK15179         92 VARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEI  167 (694)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHh
Confidence            4455555 9999999999887776433  345778888999999999999999998885  467766655555 788899


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      |++++|..+|+.....+ .-+...+..+-.++-..|+.++|...|++..+.- .|....|+..+.-+
T Consensus       168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~  232 (694)
T PRK15179        168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLVDL  232 (694)
T ss_pred             cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHHHH
Confidence            99999999999988733 2347788888999999999999999999987642 34455665554444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=96.94  E-value=0.034  Score=49.12  Aligned_cols=122  Identities=11%  Similarity=0.082  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCc--H
Q 010739          131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL-YWEMEK--K  207 (502)
Q Consensus       131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~-~~~~g~--~  207 (502)
                      +++...++...+....|...|..+-..+.        ..|++++|...|+...+..- -|...+..+-.+ |.+.|+  .
T Consensus        56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~--------~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~  126 (198)
T PRK10370         56 EAQLQALQDKIRANPQNSEQWALLGEYYL--------WRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMT  126 (198)
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCc
Confidence            34444455544444346666666666555        66777777777776665432 255556655554 345555  3


Q ss_pred             HHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhH
Q 010739          208 ERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYS  271 (502)
Q Consensus       208 ~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  271 (502)
                      ++|.+++++..+.+-. +...+..        +...+...|++++|+..|+++.+. ..|+..-
T Consensus       127 ~~A~~~l~~al~~dP~-~~~al~~--------LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r  180 (198)
T PRK10370        127 PQTREMIDKALALDAN-EVTALML--------LASDAFMQADYAQAIELWQKVLDL-NSPRVNR  180 (198)
T ss_pred             HHHHHHHHHHHHhCCC-ChhHHHH--------HHHHHHHcCCHHHHHHHHHHHHhh-CCCCccH
Confidence            6777777776655511 1111111        444445567777777777776654 3344433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.41  Score=45.91  Aligned_cols=262  Identities=10%  Similarity=0.015  Sum_probs=152.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH--hCcHHHHHHHHHHHHHcC
Q 010739          187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV--EGKYVDAIKLVIHLRESG  264 (502)
Q Consensus       187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~--~g~~~~a~~~~~~m~~~g  264 (502)
                      ++-|+.....+-+.+...|+.++|+..|++....+  |+..+-         .-.++++.  .|+++....+...+....
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~---------MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~  296 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA---------MDLYAVLLGQEGGCEQDSALMDYLFAKV  296 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh---------HHHHHHHHHhccCHhhHHHHHHHHHhhh
Confidence            66788889999999999999999999999876554  332111         12344443  689999888888776541


Q ss_pred             CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH--Hhc-CcHHhHHHHHHHHHHcCCCCchH
Q 010739          265 LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK--YQS-DLLADGSRLSSWAIQEGGSSLYG  341 (502)
Q Consensus       265 ~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~--~~~-g~~~~a~~~~~~m~~~~~~~~~~  341 (502)
                       +-+..-|-.-....... +++..|+.+.++.++.  .|+.+-.  .++.+  ... ++.++|.=-|+....-.  |-+.
T Consensus       297 -~~ta~~wfV~~~~l~~~-K~~~rAL~~~eK~I~~--~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~La--p~rL  368 (564)
T KOG1174|consen  297 -KYTASHWFVHAQLLYDE-KKFERALNFVEKCIDS--EPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLA--PYRL  368 (564)
T ss_pred             -hcchhhhhhhhhhhhhh-hhHHHHHHHHHHHhcc--CcccchH--HHhccHHHHhccchHHHHHHHHHHHhcc--hhhH
Confidence             11222222222222233 5788888877666433  3433332  35554  555 99999999887655443  3455


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHh-cCChhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV-LAICAS-QNEGSAVSRLLSRIEVMNSLCK-KKTLSWLL  418 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i~~~~~-~~~~~~a~~l~~~m~~~~~~p~-~~~~~~li  418 (502)
                      .+|.-|+++|...|++.+|.-+-++.... +.-+..+...+ -..|.- ..--+.|.++++.-..  ..|+ ....+.+-
T Consensus       369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~A  445 (564)
T KOG1174|consen  369 EIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIA  445 (564)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHH
Confidence            69999999999999999998766553321 11122222222 011111 1122345555543322  2232 23344455


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          419 RGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       419 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      ..+...|..+++..++++-+.  ..||..-.+.|-+-+..    .+...+++..|...
T Consensus       446 EL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A----~Ne~Q~am~~y~~A  497 (564)
T KOG1174|consen  446 ELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRA----QNEPQKAMEYYYKA  497 (564)
T ss_pred             HHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHH----hhhHHHHHHHHHHH
Confidence            556666677777777666443  34666666666555544    45555555554443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=96.91  E-value=0.038  Score=46.06  Aligned_cols=90  Identities=11%  Similarity=-0.050  Sum_probs=47.0

Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                      .-.++.+. |++++|...|+.....  .|+...+...+-..+.+ |++++|...|++.........  ..+..+-.++.+
T Consensus        30 ~g~~~~~~-g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~--~a~~~lg~~l~~  104 (144)
T PRK15359         30 SGYASWQE-GDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP--EPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHH
Confidence            34444455 5666666666555333  23222221134444555 666666666666555433222  355556666666


Q ss_pred             cCChHHHHHHHHHHHH
Q 010739          354 AGRGLEAERQLWEMKL  369 (502)
Q Consensus       354 ~g~~~~A~~l~~~m~~  369 (502)
                      .|+.++|...|++..+
T Consensus       105 ~g~~~eAi~~~~~Al~  120 (144)
T PRK15359        105 MGEPGLAREAFQTAIK  120 (144)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.86  E-value=0.53  Score=46.15  Aligned_cols=137  Identities=16%  Similarity=0.046  Sum_probs=82.3

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      ..|+.++|+..++.+.+. .+-|+.......+.+.+.++.++|.+.++.+....  |+....       .-.....++..
T Consensus       318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l-------~~~~a~all~~  387 (484)
T COG4783         318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLL-------QLNLAQALLKG  387 (484)
T ss_pred             HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHH-------HHHHHHHHHhc
Confidence            567777777777776653 44456666666677777777777777777776544  331000       00123334445


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      |++.+|+++++..... .+-|...|..|-.+|... |+..++..                   +.-.+|.. |+++.|..
T Consensus       388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~-g~~~~a~~-------------------A~AE~~~~~G~~~~A~~  446 (484)
T COG4783         388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAEL-GNRAEALL-------------------ARAEGYALAGRLEQAII  446 (484)
T ss_pred             CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHh-CchHHHHH-------------------HHHHHHHhCCCHHHHHH
Confidence            7777777777766544 445667777777777777 56666644                   23334444 66666666


Q ss_pred             HHHHHHHcC
Q 010739          327 LSSWAIQEG  335 (502)
Q Consensus       327 ~~~~m~~~~  335 (502)
                      .+....+..
T Consensus       447 ~l~~A~~~~  455 (484)
T COG4783         447 FLMRASQQV  455 (484)
T ss_pred             HHHHHHHhc
Confidence            665544443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.77  E-value=0.03  Score=41.77  Aligned_cols=95  Identities=12%  Similarity=0.004  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +..+...+.+.|++ +.|..+|+...+....+...+..+...+.        ..+++++|...|+...+.. +.+..++.
T Consensus         3 ~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~-~~~~~~~~   72 (100)
T cd00189           3 LLNLGNLYYKLGDY-DEALEYYEKALELDPDNADAYYNLAAAYY--------KLGKYEEALEDYEKALELD-PDNAKAYY   72 (100)
T ss_pred             HHHHHHHHHHHhcH-HHHHHHHHHHHhcCCccHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhCC-CcchhHHH
Confidence            34556667788999 89999999998776445556666666555        7899999999999987754 33556888


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSR  220 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~  220 (502)
                      .+...+...|+.++|...++...+.
T Consensus        73 ~~~~~~~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          73 NLGLAYYKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHcc
Confidence            8999999999999999999887643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.76  E-value=0.033  Score=41.50  Aligned_cols=94  Identities=18%  Similarity=0.059  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739          344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK  423 (502)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~  423 (502)
                      |..+...+...|++++|...+++..+.. ..+...+..+...+...++++.|.+.++...... ..+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            3444555566666777777766665432 1122444445556666666666666666555443 2233455566666777


Q ss_pred             CCCHHHHHHHHHHHHH
Q 010739          424 GGHINDAAETLTKMLD  439 (502)
Q Consensus       424 ~g~~~~A~~l~~~m~~  439 (502)
                      .|+.++|...+.+..+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            7777777777766543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.74  E-value=0.04  Score=51.69  Aligned_cols=140  Identities=14%  Similarity=0.096  Sum_probs=100.3

Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      .++....+ +.++.|..+|.+....+....++....+++. |...++.+.|..+|+...+. +.-+...|...++.+.+.
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence            57778888 8899999999998866655556555555553 33356777799999998865 555777788888999999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          390 NEGSAVSRLLSRIEVMNSLCKK----KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       390 ~~~~~a~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      ++.+.|..+|+.....  .|..    ..|...|.-=.+.|+.+.+.++.+++.+.  -|+...+..+++-|
T Consensus        84 ~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   84 NDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY  150 (280)
T ss_dssp             T-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred             CcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence            9999999999887654  3333    48888898888999999999999998763  34444444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.72  E-value=0.0055  Score=45.69  Aligned_cols=18  Identities=28%  Similarity=0.381  Sum_probs=7.9

Q ss_pred             HHHHHhCCCHHHHHHHHH
Q 010739          418 LRGYIKGGHINDAAETLT  435 (502)
Q Consensus       418 i~~~~~~g~~~~A~~l~~  435 (502)
                      -.+|.+.|++++|.++|+
T Consensus        65 a~~~~~l~~y~eAi~~l~   82 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALE   82 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHh
Confidence            344444444444444444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.75  Score=45.63  Aligned_cols=162  Identities=12%  Similarity=-0.040  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch-----HhHHH
Q 010739          272 YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY-----GVVHE  345 (502)
Q Consensus       272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~-----~~~~~  345 (502)
                      +..+.++..+. .+++.+.+-++.-....   ...+|.+..-..|.. |...+....-+..++.|...+-     ...+.
T Consensus       227 ek~lgnaaykk-k~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~  302 (539)
T KOG0548|consen  227 EKELGNAAYKK-KDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA  302 (539)
T ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence            34455555555 56777766555543332   334443234444666 7777666666555555422211     01222


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------------------------HHHHHhcCChhHHHHHHH
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV-------------------------LAICASQNEGSAVSRLLS  400 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-------------------------i~~~~~~~~~~~a~~l~~  400 (502)
                      .+-.+|.+.++.+.|...|.+-......||..+=..-                         -..+.+.|++..|.+.+.
T Consensus       303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt  382 (539)
T KOG0548|consen  303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT  382 (539)
T ss_pred             HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            2334566677888888888886666555543221100                         112333445555555554


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          401 RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       401 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                      ++.... .-|...|+----+|.+.|.+.+|++=.+.-+
T Consensus       383 eAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i  419 (539)
T KOG0548|consen  383 EAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI  419 (539)
T ss_pred             HHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            444443 2244455555555555555555554444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.70  E-value=0.6  Score=44.48  Aligned_cols=104  Identities=8%  Similarity=0.008  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          377 DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       377 ~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      .+.+..|.-|...|....|.++-.+   ++ .|+..-|...|.+|+..+++++-.++-..      +-.++=|..++.+|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~---Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKE---FK-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHH---cC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            3455556666666776666655333   33 36777777777777777777766654332      12335677777777


Q ss_pred             HccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhhh
Q 010739          457 RKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       457 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~  499 (502)
                      .+    .|...+|.++...+     ....-+.+|.+||++..|
T Consensus       248 ~~----~~~~~eA~~yI~k~-----~~~~rv~~y~~~~~~~~A  281 (319)
T PF04840_consen  248 LK----YGNKKEASKYIPKI-----PDEERVEMYLKCGDYKEA  281 (319)
T ss_pred             HH----CCCHHHHHHHHHhC-----ChHHHHHHHHHCCCHHHH
Confidence            76    56777777776542     235667777777776554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.69  E-value=0.091  Score=43.83  Aligned_cols=126  Identities=13%  Similarity=0.043  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV--LAICASQNEGSAVSRLLSRIEVMNSLCKKK--TLSWLL  418 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--i~~~~~~~~~~~a~~l~~~m~~~~~~p~~~--~~~~li  418 (502)
                      .|..++..+ ..++...+...++.+....-.-.-.....|  -..+...|++++|...|+........|+..  ..-.|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            666666666 488889999999998875321111222222  267888999999999999888766333222  222377


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhh
Q 010739          419 RGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKR  475 (502)
Q Consensus       419 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~  475 (502)
                      ..+...|++++|+..++......+.  ...+...=+.+.+    .|+.++|...++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~~--~~~~~~~Gdi~~~----~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAFK--ALAAELLGDIYLA----QGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcchH--HHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence            8888999999999999774333332  2233334444455    7999999988764

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.62  E-value=1.2  Score=47.00  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=23.1

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL  218 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~  218 (502)
                      +.|..++|..+++.....+.. |..|...+-.+|.+.|+.++|..+++...
T Consensus        55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~  104 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERAN  104 (932)
T ss_pred             HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            344444444444444333333 44444444444444444454444444443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.59  E-value=0.032  Score=45.02  Aligned_cols=52  Identities=10%  Similarity=-0.082  Sum_probs=45.0

Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 010739          405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL-GLYPEYMDRVAVLQGL  456 (502)
Q Consensus       405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~  456 (502)
                      ....|+..+..+++.+|+..|++..|+++.+...+. ++..+..+|..|++-+
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            446889999999999999999999999999987764 6888899999999887

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.69  Score=43.43  Aligned_cols=193  Identities=12%  Similarity=0.012  Sum_probs=110.4

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHhc-c--ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHH
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTA-VVKE-L--NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKY  316 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~-~~~~-~--~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~  316 (502)
                      +.-++..+++.+|..+.+++.  -..|-.+..-.+..+ +++. |  ..+.-|.+.|+-.-..+.+-|...-..++-..+
T Consensus       292 ~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f  369 (557)
T KOG3785|consen  292 IIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF  369 (557)
T ss_pred             eeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence            444456788888888776543  123333333332222 2222 1  223444444433355666666655544555555


Q ss_pred             hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChhH
Q 010739          317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL-AICASQNEGSA  394 (502)
Q Consensus       317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~~  394 (502)
                      -- -++++++-.++....- ....|.+-|| +-.+++..|.+.+|+++|-+.....+ -|..+|-+++ .+|.+.+..+.
T Consensus       370 FL~~qFddVl~YlnSi~sY-F~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~l  446 (557)
T KOG3785|consen  370 FLSFQFDDVLTYLNSIESY-FTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQL  446 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHH-hcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchH
Confidence            44 6777777766554332 3333534443 56778888888889888876653333 3667777777 67788888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          395 VSRLLSRIEVMNSLCKKKTLSWL-LRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      |+.++-.+..   ..+..+.-.+ ..-|-+.+.+--|-+.|+++....
T Consensus       447 AW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  447 AWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD  491 (557)
T ss_pred             HHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence            8766544432   2223333333 345667788877777787766543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=96.54  E-value=0.57  Score=42.18  Aligned_cols=149  Identities=10%  Similarity=-0.069  Sum_probs=100.7

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      |+-+....+.......  .+.|...-+..+....+.|++.+|...|.+... .-.+|..+|+.+=-+|.+.|+.+.|..-
T Consensus        80 G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~Gr~~~Ar~a  156 (257)
T COG5010          80 GDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQLGRFDEARRA  156 (257)
T ss_pred             ccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHccChhHHHHH
Confidence            6666666655432222  223434566677888888999999988888764 3466778888888888888999888887


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      +....+.... +...+|-|--.|.-.|+.+.|..++......+-. |...-..+......    .|++++|..+...-
T Consensus       157 y~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~----~g~~~~A~~i~~~e  228 (257)
T COG5010         157 YRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGL----QGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhh----cCChHHHHhhcccc
Confidence            7655554322 4455666777777788999999888887776643 33333444444444    68888888876544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.49  E-value=0.47  Score=47.43  Aligned_cols=221  Identities=9%  Similarity=-0.004  Sum_probs=140.8

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCC------
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLK------  188 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~------  188 (502)
                      .|..|=..-+.+++- ..|+.-+.+..+...-|....-.|--.+.        ..|.-..|+.+|+.-.+...+      
T Consensus       321 AW~~LG~~qaENE~E-~~ai~AL~rcl~LdP~NleaLmaLAVSyt--------Neg~q~~Al~~L~~Wi~~~p~y~~l~~  391 (579)
T KOG1125|consen  321 AWQKLGITQAENENE-QNAISALRRCLELDPTNLEALMALAVSYT--------NEGLQNQALKMLDKWIRNKPKYVHLVS  391 (579)
T ss_pred             HHHHhhhHhhhccch-HHHHHHHHHHHhcCCccHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHhCccchhccc
Confidence            388888888888888 79999999888887446666666666677        889999999999887654311      


Q ss_pred             --CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-HcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739          189 --PGFSMIEKVISLYWEMEKKERAVLFVKAVL-SRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL  265 (502)
Q Consensus       189 --p~~~~y~~li~~~~~~g~~~~A~~l~~~m~-~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~  265 (502)
                        ++...-+.  ..+.....+....++|-++. +.+..+|...+..        +---+...|.+++|++.|+....  +
T Consensus       392 a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~--------LGVLy~ls~efdraiDcf~~AL~--v  459 (579)
T KOG1125|consen  392 AGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG--------LGVLYNLSGEFDRAVDCFEAALQ--V  459 (579)
T ss_pred             cCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh--------hHHHHhcchHHHHHHHHHHHHHh--c
Confidence              01100000  22233334556666666664 4452233333322        33334457999999999998876  4


Q ss_pred             CCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch--hchHHHHHHHHhc-CcHHhHHHHHHHHHH---cC---
Q 010739          266 KPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL--DGKNLGLIEKYQS-DLLADGSRLSSWAIQ---EG---  335 (502)
Q Consensus       266 ~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~~li~~~~~-g~~~~a~~~~~~m~~---~~---  335 (502)
                      +|+ ...||-|-..++.. .+.++|++-+++-++.  .|+-  +-||  |--.|.. |.+++|.+.|-....   .+   
T Consensus       460 ~Pnd~~lWNRLGAtLAN~-~~s~EAIsAY~rALqL--qP~yVR~RyN--lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~  534 (579)
T KOG1125|consen  460 KPNDYLLWNRLGATLANG-NRSEEAISAYNRALQL--QPGYVRVRYN--LGISCMNLGAYKEAVKHLLEALSMQRKSRNH  534 (579)
T ss_pred             CCchHHHHHHhhHHhcCC-cccHHHHHHHHHHHhc--CCCeeeeehh--hhhhhhhhhhHHHHHHHHHHHHHhhhccccc
Confidence            665 56788888888888 8999999988877443  4432  3355  5555666 999999998754332   21   


Q ss_pred             --CCCchHhHHHHHHHHHHHcCChHHHH
Q 010739          336 --GSSLYGVVHERLLAMYICAGRGLEAE  361 (502)
Q Consensus       336 --~~~~~~~~~~~li~~~~~~g~~~~A~  361 (502)
                        .+..+.-.|.+|=.++.-.++.|-+.
T Consensus       535 ~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  535 NKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             ccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence              11112236666666666666655444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.59  Score=41.91  Aligned_cols=188  Identities=14%  Similarity=0.129  Sum_probs=137.1

Q ss_pred             HhCcHHHHHHHHHHHHHc---C-CCCCHhH-HHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc-
Q 010739          246 VEGKYVDAIKLVIHLRES---G-LKPEVYS-YLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS-  318 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~---g-~~p~~~t-y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~-  318 (502)
                      ...+.++.++++.+|...   | ..|+..+ |--++-+.... +..+-|...++++.+.-  |.+.-.. .|-.+ +.. 
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~-~~~~lAq~C~~~L~~~f--p~S~RV~-~lkam~lEa~   99 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDT-GRDDLAQKCINQLRDRF--PGSKRVG-KLKAMLLEAT   99 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhC--CCChhHH-HHHHHHHHHh
Confidence            346789999999988764   5 7777754 56677777777 78999999999984442  4333221 23333 444 


Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      |..++|.++++...++.  +.|.++|-.=+...-..|+--+|++-+.+..+ .+.-|...|.-+-..|...|+++.|.--
T Consensus       100 ~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            99999999999988876  44667888777777778888899988888775 4677999999999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCC
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKGG---HINDAAETLTKMLDLG  441 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g  441 (502)
                      ++++.-.. +.+...+..+-..+.-.|   +.+-|.+.|.+-.+..
T Consensus       177 lEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  177 LEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            99887654 223444444555443333   5677888888876644

>PLN02789 farnesyltranstransferase

Probab=96.48  E-value=0.85  Score=43.59  Aligned_cols=150  Identities=6%  Similarity=-0.022  Sum_probs=77.1

Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCh----hH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ---NEG----SA  394 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---~~~----~~  394 (502)
                      +++..+++++......  +..+|+...-.+.+.|+++++++.++++.+.... |...|+..-..+.+.   |..    ++
T Consensus       125 ~~el~~~~kal~~dpk--Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        125 NKELEFTRKILSLDAK--NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             HHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence            4445555555544332  2336666666666667777777777777665432 333444433333332   112    23


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccc------
Q 010739          395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKG----GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSG------  464 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~------  464 (502)
                      ..+......... .-|...|+.+...+...    ++..+|.+.+.+..+.+ ..+......|++.++...+..+      
T Consensus       202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~  279 (320)
T PLN02789        202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTV  279 (320)
T ss_pred             HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence            444443333333 22566666666555552    33455777776655533 2345566667777664221111      


Q ss_pred             --------cHHHHHHHHhhh
Q 010739          465 --------NVEAYLNLCKRL  476 (502)
Q Consensus       465 --------~~~~a~~~~~~m  476 (502)
                              ..+.|.+++..+
T Consensus       280 ~~~~~~~~~~~~a~~~~~~l  299 (320)
T PLN02789        280 DTLAEELSDSTLAQAVCSEL  299 (320)
T ss_pred             hccccccccHHHHHHHHHHH
Confidence                    346677777666

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.42  E-value=0.43  Score=44.94  Aligned_cols=131  Identities=14%  Similarity=0.061  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh--c-c--ccHHHHHHHHHHH-HHcCCC--CchhchHHHHHHHHhc---
Q 010739          250 YVDAIKLVIHLRESGLKPEVYSYLIALTAVVK--E-L--NEFGKALRKLKGY-VRAGSI--AELDGKNLGLIEKYQS---  318 (502)
Q Consensus       250 ~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~--~-~--~~~~~a~~~~~~m-~~~g~~--p~~~~~~~~li~~~~~---  318 (502)
                      +++.+.+++.|.+.|++-+..+|-+..-....  . .  ....+|..+++.| .+..+-  ++-.++. +|+..-..   
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a-~lLA~~~~~~e  156 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFA-ALLAMTSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHH-HHHhcccccHH
Confidence            55566788899999999999888774444444  1 0  2467788888888 444443  2333332 34433211   


Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGR---GLEAERQLWEMKLVGKEADGDLYDI  381 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~  381 (502)
                      ...+.++.+|+.+...|....|..-+-+-|-+++....   ..++.++++.+++.|+++....|..
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~  222 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT  222 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence            22456666777777766554444444444444444211   3456677777777777766655543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.41  E-value=0.45  Score=49.18  Aligned_cols=214  Identities=11%  Similarity=0.042  Sum_probs=137.6

Q ss_pred             HHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHH
Q 010739          180 VDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIH  259 (502)
Q Consensus       180 ~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~  259 (502)
                      .++....+.-|...|..|-=+..++|+++.+.+.|++..-.-+.-. ..|.        .+...+.-+|.-..|+.++++
T Consensus       312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~-e~w~--------~~als~saag~~s~Av~ll~~  382 (799)
T KOG4162|consen  312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEH-ERWY--------QLALSYSAAGSDSKAVNLLRE  382 (799)
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH-HHHH--------HHHHHHHHhccchHHHHHHHh
Confidence            3444445666888999999999999999999999998764322111 1111        134444456888889988887


Q ss_pred             HHHcCCCCCHhHHHHHHH-HHHhccccHHHHHHHHHHHHH-----cCCCCchhchHHHHHHHHh-----------c-CcH
Q 010739          260 LRESGLKPEVYSYLIALT-AVVKELNEFGKALRKLKGYVR-----AGSIAELDGKNLGLIEKYQ-----------S-DLL  321 (502)
Q Consensus       260 m~~~g~~p~~~ty~~li~-~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~~li~~~~-----------~-g~~  321 (502)
                      -....-.|+..+--.++. .|.+.-+.+++++++..+.++     .+.- ....|- .+--+|+           + ...
T Consensus       383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l-~~~~~l-~lGi~y~~~A~~a~~~seR~~~h  460 (799)
T KOG4162|consen  383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL-KPRGYL-FLGIAYGFQARQANLKSERDALH  460 (799)
T ss_pred             hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh-hhhHHH-HHHHHHHhHhhcCCChHHHHHHH
Confidence            654433355444334444 344443556666665544433     1111 112221 1111121           1 235


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS-  400 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~-  400 (502)
                      .++.+.+++.++.+..+++++.|-++  -|+..++++.|++...+..+.+-.-+...|..+.-.+...+++.+|..+.+ 
T Consensus       461 ~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~  538 (799)
T KOG4162|consen  461 KKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA  538 (799)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            67777888888888777775555444  466788999999999999988777788899888888888999999999985 


Q ss_pred             HHHHcC
Q 010739          401 RIEVMN  406 (502)
Q Consensus       401 ~m~~~~  406 (502)
                      .+.++|
T Consensus       539 al~E~~  544 (799)
T KOG4162|consen  539 ALEEFG  544 (799)
T ss_pred             HHHHhh
Confidence            344554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.36  E-value=0.16  Score=40.26  Aligned_cols=99  Identities=10%  Similarity=-0.059  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKE-A-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL--CKKKTLSWLL  418 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~--p~~~~~~~li  418 (502)
                      ++-.....+.+.|++++|...|+.+....-. | ....+..+...+...|+++.|.+.++........  .....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4444555566666666666666666543210 1 1223344455666666666666666665543211  1133445555


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCC
Q 010739          419 RGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       419 ~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      ..+.+.|+.++|...+++..+..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHC
Confidence            66667777777777777766653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.34  E-value=0.095  Score=41.61  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=75.8

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCC--C-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CC
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENR--V-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LK  188 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~  188 (502)
                      +.+-.+...+.+.|++ +.|.+.|+.+.+...  + ....+..+...+.        +.|+++.|...|+......  ..
T Consensus         3 ~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         3 EAYYDAALLVLKAGDY-ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY--------AQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHHCCCCC
Confidence            3455666777888999 899999999987651  2 1334555566566        8999999999999987642  12


Q ss_pred             CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          189 PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       189 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .....+..+...+.+.|+.++|.+.++++.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            235668888889999999999999999998775

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.33  E-value=0.0088  Score=44.58  Aligned_cols=80  Identities=9%  Similarity=-0.000  Sum_probs=42.2

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV-LAICASQNEGSAVSR  397 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i~~~~~~~~~~~a~~  397 (502)
                      |+++.|..+|+++........+...+-.+-.+|.+.|++++|..++++   ....|+......+ -.+|.+.|++++|.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~---~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK---LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC---HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            566666666666666554221323344466666667777777666666   1222333222222 356666666666666


Q ss_pred             HHHH
Q 010739          398 LLSR  401 (502)
Q Consensus       398 l~~~  401 (502)
                      +++.
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6643

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.24  E-value=1.5  Score=43.96  Aligned_cols=258  Identities=11%  Similarity=0.026  Sum_probs=153.7

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010739          123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYW  202 (502)
Q Consensus       123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~  202 (502)
                      +.++|.. ..|.=.|+...+...-+...|--|-....        ..++-..|+.-|++-.+..- -|....-+|--.|.
T Consensus       295 lm~nG~L-~~A~LafEAAVkqdP~haeAW~~LG~~qa--------ENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSyt  364 (579)
T KOG1125|consen  295 LMKNGDL-SEAALAFEAAVKQDPQHAEAWQKLGITQA--------ENENEQNAISALRRCLELDP-TNLEALMALAVSYT  364 (579)
T ss_pred             HHhcCCc-hHHHHHHHHHHhhChHHHHHHHHhhhHhh--------hccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHh
Confidence            3567778 68888888888777346777876666555        66666777777777666422 25677778888889


Q ss_pred             hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739          203 EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE  282 (502)
Q Consensus       203 ~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~  282 (502)
                      ..|.-.+|.+.|+.......+--              .+-.....++.+               +.        ..+...
T Consensus       365 Neg~q~~Al~~L~~Wi~~~p~y~--------------~l~~a~~~~~~~---------------~~--------~s~~~~  407 (579)
T KOG1125|consen  365 NEGLQNQALKMLDKWIRNKPKYV--------------HLVSAGENEDFE---------------NT--------KSFLDS  407 (579)
T ss_pred             hhhhHHHHHHHHHHHHHhCccch--------------hccccCcccccc---------------CC--------cCCCCH
Confidence            99999999999998876542200              000000001100               00        111111


Q ss_pred             cccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHH
Q 010739          283 LNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEA  360 (502)
Q Consensus       283 ~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A  360 (502)
                       ..+....++|-++ ...+..+|..++. .|--.|-- |.++.|...|+......  |.|...||-|-..++...+.++|
T Consensus       408 -~~l~~i~~~fLeaa~~~~~~~DpdvQ~-~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EA  483 (579)
T KOG1125|consen  408 -SHLAHIQELFLEAARQLPTKIDPDVQS-GLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEA  483 (579)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCCChhHHh-hhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHH
Confidence             2334444445555 4455333333332 44444545 77777777777655543  33556888888888888888888


Q ss_pred             HHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHH---HHHHcC------CCCCHHHHHHHHHHHHhCCCHHH
Q 010739          361 ERQLWEMKLVGKEADGD--LYDIVLAICASQNEGSAVSRLLS---RIEVMN------SLCKKKTLSWLLRGYIKGGHIND  429 (502)
Q Consensus       361 ~~l~~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~l~~---~m~~~~------~~p~~~~~~~li~~~~~~g~~~~  429 (502)
                      +.-|++..+  ++|+-+  -||.-| +|...|.+++|.+.|=   .|...+      ..++...|.+|=.++.-.++.|.
T Consensus       484 IsAY~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~  560 (579)
T KOG1125|consen  484 ISAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL  560 (579)
T ss_pred             HHHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence            888888774  556532  344443 5667788887777662   223221      12344577776666666777765


Q ss_pred             HHHHH
Q 010739          430 AAETL  434 (502)
Q Consensus       430 A~~l~  434 (502)
                      +.+..
T Consensus       561 l~~a~  565 (579)
T KOG1125|consen  561 LQEAA  565 (579)
T ss_pred             HHHhc
Confidence            54443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.10  E-value=1.3  Score=41.74  Aligned_cols=134  Identities=17%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcC-CC-ChH----HHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKEN-RV-DNE----TMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP  189 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~-~~-~~~----~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p  189 (502)
                      |+..-..|...|++ ++|.+.|....+.. .. +..    .|..... +.        +..++++|..            
T Consensus        38 y~~Aa~~fk~~~~~-~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~-~~--------k~~~~~~Ai~------------   95 (282)
T PF14938_consen   38 YEKAANCFKLAKDW-EKAAEAYEKAADCYEKLGDKFEAAKAYEEAAN-CY--------KKGDPDEAIE------------   95 (282)
T ss_dssp             HHHHHHHHHHTT-C-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-HH--------HHTTHHHHHH------------
T ss_pred             HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HH--------HhhCHHHHHH------------
Confidence            55566677788888 78888887775332 11 111    2222212 11        2334444444            


Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh-CcHHHHHHHHHHHHHc----C
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE-GKYVDAIKLVIHLRES----G  264 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~m~~~----g  264 (502)
                         .|...+..|.+.|++..|-+.+.++-+.                       +-.. |++++|++.|++-...    |
T Consensus        96 ---~~~~A~~~y~~~G~~~~aA~~~~~lA~~-----------------------ye~~~~d~e~Ai~~Y~~A~~~y~~e~  149 (282)
T PF14938_consen   96 ---CYEKAIEIYREAGRFSQAAKCLKELAEI-----------------------YEEQLGDYEKAIEYYQKAAELYEQEG  149 (282)
T ss_dssp             ---HHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------------------HCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHhcCcHHHHHHHHHHHHHH-----------------------HHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence               4666778888889888888887766321                       1123 6778888877765432    2


Q ss_pred             CCCC--HhHHHHHHHHHHhccccHHHHHHHHHHHHHc
Q 010739          265 LKPE--VYSYLIALTAVVKELNEFGKALRKLKGYVRA  299 (502)
Q Consensus       265 ~~p~--~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~  299 (502)
                       .+.  ..++.-+...+.+. +++++|.++|++....
T Consensus       150 -~~~~a~~~~~~~A~l~~~l-~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  150 -SPHSAAECLLKAADLYARL-GRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             --HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHT
T ss_pred             -ChhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence             111  23445556666666 6777777777766443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.02  E-value=0.26  Score=39.76  Aligned_cols=96  Identities=15%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV  269 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~  269 (502)
                      |..++.++|-++++.|+++....+++..-  |+.++...=.                 +.         .-......|+.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~~-----------------~~---------~~~~spl~Pt~   52 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKKE-----------------GD---------YPPSSPLYPTS   52 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcccc-----------------Cc---------cCCCCCCCCCH
Confidence            56789999999999999999999886553  3333211000                 00         11234688999


Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEK  315 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~  315 (502)
                      .+..+++.+|+.. +++..|+++++.. ...+++.+..++. .|+.-
T Consensus        53 ~lL~AIv~sf~~n-~~i~~al~~vd~fs~~Y~I~i~~~~W~-~Ll~W   97 (126)
T PF12921_consen   53 RLLIAIVHSFGYN-GDIFSALKLVDFFSRKYPIPIPKEFWR-RLLEW   97 (126)
T ss_pred             HHHHHHHHHHHhc-ccHHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Confidence            9999999999999 8999999999998 7778776666665 45554

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.01  E-value=0.29  Score=42.15  Aligned_cols=84  Identities=18%  Similarity=0.045  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD--GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      ..|..+...+...|++++|...|++..+..-.++  ...+..+-..+.+.|++++|.+.++....... -+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            3445555555556666666666666554322221  23444444555666666666666655444321 12334444444


Q ss_pred             HHHhCCC
Q 010739          420 GYIKGGH  426 (502)
Q Consensus       420 ~~~~~g~  426 (502)
                      .|...|+
T Consensus       115 ~~~~~g~  121 (172)
T PRK02603        115 IYHKRGE  121 (172)
T ss_pred             HHHHcCC
Confidence            5555444

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.96  E-value=0.064  Score=48.49  Aligned_cols=86  Identities=16%  Similarity=0.059  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----------------hHHHHHHH
Q 010739          342 VVHERLLAMYIC-----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEG----------------SAVSRLLS  400 (502)
Q Consensus       342 ~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~----------------~~a~~l~~  400 (502)
                      -+|-+++..|..     .+.++-...-++.|++-|+.-|..+|+.||..+-+..-.                +-+.++++
T Consensus        68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe  147 (406)
T KOG3941|consen   68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE  147 (406)
T ss_pred             HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence            366666666654     356666777788899999999999999999877664322                23677888


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739          401 RIEVMNSLCKKKTLSWLLRGYIKGGHI  427 (502)
Q Consensus       401 ~m~~~~~~p~~~~~~~li~~~~~~g~~  427 (502)
                      .|...|+.||..+-..|+++|.+.|..
T Consensus       148 qME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  148 QMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHHcCCCCchHHHHHHHHHhcccccc
Confidence            888888889888888888888888764

>PLN02789 farnesyltranstransferase

Probab=95.95  E-value=1.6  Score=41.70  Aligned_cols=139  Identities=12%  Similarity=0.127  Sum_probs=84.6

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010739          123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCVGLKPGFSMIEKVISLY  201 (502)
Q Consensus       123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~  201 (502)
                      +...++. +.|+.+.+.+.+...-+..+|+.--.++.        ..+ .+++++.+++++.+..-+ +..+|+.--..+
T Consensus        47 l~~~e~s-erAL~lt~~aI~lnP~~ytaW~~R~~iL~--------~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l  116 (320)
T PLN02789         47 YASDERS-PRALDLTADVIRLNPGNYTVWHFRRLCLE--------ALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA  116 (320)
T ss_pred             HHcCCCC-HHHHHHHHHHHHHCchhHHHHHHHHHHHH--------HcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence            3445667 79999999998877335556654433333        334 678999999888876433 555677655555


Q ss_pred             HhcCcH--HHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010739          202 WEMEKK--ERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV  279 (502)
Q Consensus       202 ~~~g~~--~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~  279 (502)
                      .+.|+.  +++..+++.+.+.+-+ |...++-        -.|.+...|+++++++.++++.+.... |...|+.....+
T Consensus       117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~--------R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl  186 (320)
T PLN02789        117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSH--------RQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI  186 (320)
T ss_pred             HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHH--------HHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence            566653  6778888888766511 1111111        233334458899999999998876433 344454444433


Q ss_pred             Hh
Q 010739          280 VK  281 (502)
Q Consensus       280 ~~  281 (502)
                      .+
T Consensus       187 ~~  188 (320)
T PLN02789        187 TR  188 (320)
T ss_pred             Hh
Confidence            33

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.94  E-value=0.072  Score=48.20  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------------CHHHH
Q 010739          372 KEADGDLYDIVLAICASQ-----NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG----------------HINDA  430 (502)
Q Consensus       372 ~~p~~~t~~~li~~~~~~-----~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g----------------~~~~A  430 (502)
                      -+-|-.+|-+.+..+...     +.++-....++.|+++|+.-|..+|+.||..+=+..                +-+-+
T Consensus        63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~  142 (406)
T KOG3941|consen   63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA  142 (406)
T ss_pred             ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence            344666666666655443     445666667799999999999999999999876653                23457


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          431 AETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       431 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      .+++++|...|+-||..+-..|++++.+
T Consensus       143 I~vLeqME~hGVmPdkE~e~~lvn~FGr  170 (406)
T KOG3941|consen  143 IKVLEQMEWHGVMPDKEIEDILVNAFGR  170 (406)
T ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence            8999999999999999999999999965

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.94  E-value=1.7  Score=41.88  Aligned_cols=281  Identities=12%  Similarity=0.073  Sum_probs=176.2

Q ss_pred             HHcCCChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH----HHHHHH
Q 010739          124 SQEGRDSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF----SMIEKV  197 (502)
Q Consensus       124 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~l  197 (502)
                      +-.++. ..|...+-......  +-|+.....+-+.+.        ..|+.++|+..|++-...  .|+.    ..|..|
T Consensus       207 ~~~~~h-s~a~~t~l~le~~~~lr~NvhLl~~lak~~~--------~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~L  275 (564)
T KOG1174|consen  207 MFNFKH-SDASQTFLMLHDNTTLRCNEHLMMALGKCLY--------YNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVL  275 (564)
T ss_pred             HHhccc-chhhhHHHHHHhhccCCccHHHHHHHhhhhh--------hhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHH
Confidence            334555 36666665555444  558888888888888        899999999999986653  3332    223333


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-hHHHHHH
Q 010739          198 ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-YSYLIAL  276 (502)
Q Consensus       198 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~li  276 (502)
                         +.+.|+.++..++...+-...      .|+.   .++-+...-..-..+++.|+.+-++-.+.  .|+. ..|-.=-
T Consensus       276 ---L~~eg~~e~~~~L~~~Lf~~~------~~ta---~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG  341 (564)
T KOG1174|consen  276 ---LGQEGGCEQDSALMDYLFAKV------KYTA---SHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKG  341 (564)
T ss_pred             ---HHhccCHhhHHHHHHHHHhhh------hcch---hhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhcc
Confidence               367889999888888776443      1111   01111122223357888888877765543  2322 2222112


Q ss_pred             HHHHhccccHHHHHHHHHHHHHcCCC-CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH---HHHH
Q 010739          277 TAVVKELNEFGKALRKLKGYVRAGSI-AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL---LAMY  351 (502)
Q Consensus       277 ~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l---i~~~  351 (502)
                      +.+... ++.++|.=-|+.-..  +. -+..+|. -|+..|.. |++.+|.-.-++....-..  +..+.+.+   +...
T Consensus       342 ~lL~~~-~R~~~A~IaFR~Aq~--Lap~rL~~Y~-GL~hsYLA~~~~kEA~~~An~~~~~~~~--sA~~LtL~g~~V~~~  415 (564)
T KOG1174|consen  342 RLLIAL-ERHTQAVIAFRTAQM--LAPYRLEIYR-GLFHSYLAQKRFKEANALANWTIRLFQN--SARSLTLFGTLVLFP  415 (564)
T ss_pred             HHHHhc-cchHHHHHHHHHHHh--cchhhHHHHH-HHHHHHHhhchHHHHHHHHHHHHHHhhc--chhhhhhhcceeecc
Confidence            334444 678888766666532  33 3556776 69999988 9999998876553322111  11122111   1111


Q ss_pred             HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 010739          352 ICAGRGLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDA  430 (502)
Q Consensus       352 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  430 (502)
                       ....-++|..+++.-.  .+.|+-. ..+.+...|...|..+.+..+++.-..  ..||...-+.|-+.+...+.+.+|
T Consensus       416 -dp~~rEKAKkf~ek~L--~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  416 -DPRMREKAKKFAEKSL--KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKA  490 (564)
T ss_pred             -CchhHHHHHHHHHhhh--ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHH
Confidence             1223367888877644  4567644 344455788889999999999986653  358999999999999999999999


Q ss_pred             HHHHHHHHHC
Q 010739          431 AETLTKMLDL  440 (502)
Q Consensus       431 ~~l~~~m~~~  440 (502)
                      ++.|...+..
T Consensus       491 m~~y~~ALr~  500 (564)
T KOG1174|consen  491 MEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHhc
Confidence            9999886653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.81  E-value=0.26  Score=48.03  Aligned_cols=99  Identities=10%  Similarity=-0.053  Sum_probs=49.7

Q ss_pred             HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739          353 CAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA  431 (502)
Q Consensus       353 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  431 (502)
                      ..|++++|+.+|++..+.  .| +...|..+-.++...|++++|...++...... ..+...|..+-.+|...|++++|.
T Consensus        14 ~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~   90 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK   90 (356)
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence            445555555555555432  22 23333334445555555555555555554433 123445555555666666666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          432 ETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       432 ~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      ..|++.+.  +.|+.......+..|
T Consensus        91 ~~~~~al~--l~P~~~~~~~~l~~~  113 (356)
T PLN03088         91 AALEKGAS--LAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHH--hCCCCHHHHHHHHHH
Confidence            66666554  234444444444444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.77  E-value=0.092  Score=48.08  Aligned_cols=136  Identities=13%  Similarity=0.013  Sum_probs=93.2

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739          350 MYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  428 (502)
                      -+.+.+++++|+..|.+..+  +.|+ .+-|..=-.+|++.|.++.|++=.+.....+ .--..+|..|-.+|...|+++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence            35578899999999998885  5664 4445556689999999999887776665544 124668888999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHH
Q 010739          429 DAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYI  491 (502)
Q Consensus       429 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~  491 (502)
                      +|.+.|++.+  .+.|+-.+|..=|...-..+++......+...++.....+ ..|.++.++.
T Consensus       167 ~A~~aykKaL--eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig-~~Pd~~s~~~  226 (304)
T KOG0553|consen  167 EAIEAYKKAL--ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG-AFPDSRSMFN  226 (304)
T ss_pred             HHHHHHHhhh--ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc-CCccchhhhc
Confidence            9999999865  4779999998888877544333332233333332222222 2245555554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.74  E-value=1.7  Score=44.27  Aligned_cols=90  Identities=9%  Similarity=0.045  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------CCCHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS---------LCKKKT  413 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~---------~p~~~~  413 (502)
                      +...+-.-+.+...+.-|-++|..|-..         ..+++.....+++++|..+-+..-++--         .....-
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr  819 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR  819 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence            4444444444566666777777776532         3455566667777777766654433210         011122


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          414 LSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       414 ~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      |.---++|.++|+-.+|..+++++....
T Consensus       820 FeEAqkAfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  820 FEEAQKAFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence            3334567788888888888888765543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=1.5  Score=39.45  Aligned_cols=190  Identities=13%  Similarity=0.003  Sum_probs=124.5

Q ss_pred             ccHHHHHHHHHHH---HHcC-CCCchhc-hHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChH
Q 010739          284 NEFGKALRKLKGY---VRAG-SIAELDG-KNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGL  358 (502)
Q Consensus       284 ~~~~~a~~~~~~m---~~~g-~~p~~~~-~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  358 (502)
                      ...++.++++.++   .+.| ..++..+ |....|.+.-.|+.+.|..+++.+...-....-+.-..+|.  +-..|+++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~  103 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYK  103 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchh
Confidence            4578888887777   2345 5555543 33344555555999999999988766552222222333322  33489999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739          359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLS-RIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM  437 (502)
Q Consensus       359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  437 (502)
                      +|+++++...+.. +-|..+|--=+...-..|.--+|.+-+. ....|  .-|...|.-+-..|...|++++|.-.+++|
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999999876 4466777666666666666556655554 44433  568999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          438 LDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       438 ~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      .-.. +-+...|..+-+.+-- .....+++.+.+.+....+..
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt-~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYT-QGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhC
Confidence            8643 1234444555554421 111446777777777665543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.63  E-value=0.092  Score=43.81  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 010739          380 DIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRV  450 (502)
Q Consensus       380 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~  450 (502)
                      ..++..+...|+.+.|.++.+.+.... +.|...|..+|.+|...|+..+|.+.|+++..     .|+.|+..|-.
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            444455666677777777777666655 33677777788888888888888777777643     47777776643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.51  E-value=0.049  Score=38.45  Aligned_cols=60  Identities=20%  Similarity=0.133  Sum_probs=36.0

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIV  382 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  382 (502)
                      |++++|.+.|+.+........+  .+-.+..+|.+.|++++|..+++++...  .|+...|..+
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPE--ARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            6667777777666655443333  5556777777777777777777766643  3554444443

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=95.48  E-value=3.9  Score=42.68  Aligned_cols=279  Identities=12%  Similarity=-0.004  Sum_probs=173.5

Q ss_pred             cCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC----CHHHHHHHHHH
Q 010739          126 EGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP----GFSMIEKVISL  200 (502)
Q Consensus       126 ~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~y~~li~~  200 (502)
                      .+.. +.++.-+......+ ..++.++..+...+..    +. ..++++++ .++....+.-++-    |+..+-.++--
T Consensus       240 ~~~~-~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~----f~-~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~  312 (799)
T KOG4162|consen  240 LSGP-KEAIKSYRRALLRSWSLDPLTKARLYKGFAL----FL-PKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLR  312 (799)
T ss_pred             CCCc-hHHHHhhhHHhhcccccchhHHHHHhhcccc----cC-CCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHH
Confidence            3445 56666665555555 5566666654443321    11 46777776 3333333332222    34444444444


Q ss_pred             HHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739          201 YWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV  280 (502)
Q Consensus       201 ~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~  280 (502)
                      +.+.+++..+-.+|+.                       +.+.....|+++.+-+.|++.... +.-....|..+-..+.
T Consensus       313 k~r~~~~qnd~ai~d~-----------------------Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~s  368 (799)
T KOG4162|consen  313 KLRLKKFQNDAAIFDH-----------------------LTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYS  368 (799)
T ss_pred             HHHHhhhcchHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHH
Confidence            5555555555555554                       577888899999999999987643 3334456677777777


Q ss_pred             hccccHHHHHHHHHHHHHcCCCCchhchHHHHHHH-Hhc--CcHHhHHHHHHHHHHcC---CCCchHhHHHHHHHHHHHc
Q 010739          281 KELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK-YQS--DLLADGSRLSSWAIQEG---GSSLYGVVHERLLAMYICA  354 (502)
Q Consensus       281 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~-~~~--g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~  354 (502)
                      -. +.-..|..+++.-....-.|+..+-- .++.. |.+  +..++++.+-.+.+...   ........|-.+--+|...
T Consensus       369 aa-g~~s~Av~ll~~~~~~~~~ps~~s~~-Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~  446 (799)
T KOG4162|consen  369 AA-GSDSKAVNLLRESLKKSEQPSDISVL-LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQ  446 (799)
T ss_pred             Hh-ccchHHHHHHHhhcccccCCCcchHH-HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhH
Confidence            77 67788888777663333234433321 22222 554  88888888777766622   2222334565555555541


Q ss_pred             -----------CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739          355 -----------GRGLEAERQLWEMKLV-GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI  422 (502)
Q Consensus       355 -----------g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~  422 (502)
                                 ....++++.+++..+. +-.|+..-|-++-  ++..++++.|.+...+....+-.-+...|.-|.-.+.
T Consensus       447 A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlS  524 (799)
T KOG4162|consen  447 ARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLS  524 (799)
T ss_pred             hhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence                       1234567777777654 4566666666655  4456799999999988888866778888888888889


Q ss_pred             hCCCHHHHHHHHHHHHH
Q 010739          423 KGGHINDAAETLTKMLD  439 (502)
Q Consensus       423 ~~g~~~~A~~l~~~m~~  439 (502)
                      ..+++.+|+.+.+...+
T Consensus       525 a~kr~~~Al~vvd~al~  541 (799)
T KOG4162|consen  525 AQKRLKEALDVVDAALE  541 (799)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            99999999999887654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.46  E-value=1.2  Score=41.89  Aligned_cols=147  Identities=13%  Similarity=0.047  Sum_probs=93.1

Q ss_pred             HhHHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCCCchhchHHHH-HHHHhc-----CcHHhHHHHHHHHHHcC--CCCc
Q 010739          269 VYSYLIALTAVVKEL-NEFGKALRKLKGYVRAGSIAELDGKNLGL-IEKYQS-----DLLADGSRLSSWAIQEG--GSSL  339 (502)
Q Consensus       269 ~~ty~~li~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~l-i~~~~~-----g~~~~a~~~~~~m~~~~--~~~~  339 (502)
                      ..++.+++..-.... ..+.+...+++.|.+.|+.-+..+|-.++ |.....     -....|..+++.|.+..  ....
T Consensus        60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~  139 (297)
T PF13170_consen   60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP  139 (297)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence            345555555444421 34667777788889999998887764222 222311     34667888999999877  3344


Q ss_pred             hHhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCH
Q 010739          340 YGVVHERLLAMYICAGR----GLEAERQLWEMKLVGKEADGD-LYDIVLAICASQNE---GSAVSRLLSRIEVMNSLCKK  411 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~~~---~~~a~~l~~~m~~~~~~p~~  411 (502)
                      +-+++.+|+..  ..++    .++++.+|+.+.+.|+..+.. -+-+-|-+++....   +..+.++++.+++.|+++..
T Consensus       140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~  217 (297)
T PF13170_consen  140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY  217 (297)
T ss_pred             cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence            44788777765  3333    356778888888888876443 33333333333222   34677788999999988887


Q ss_pred             HHHHHH
Q 010739          412 KTLSWL  417 (502)
Q Consensus       412 ~~~~~l  417 (502)
                      ..|..+
T Consensus       218 ~~yp~l  223 (297)
T PF13170_consen  218 MHYPTL  223 (297)
T ss_pred             ccccHH
Confidence            777664

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.36  E-value=0.77  Score=36.69  Aligned_cols=102  Identities=13%  Similarity=-0.045  Sum_probs=53.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---H-HHHHHHHHHHHh
Q 010739          350 MYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK---K-KTLSWLLRGYIK  423 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~---~-~~~~~li~~~~~  423 (502)
                      ++-..|+.++|..+|++-.+.|...+.  ..+..+-+.+...|++++|..+++......  |+   . .....+--++..
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHH
Confidence            344466666777777666666655432  223333356666677777777776554322  22   1 111123335566


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739          424 GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR  457 (502)
Q Consensus       424 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~  457 (502)
                      .|+.++|++.+-....    ++...|.--|..|.
T Consensus        88 ~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   88 LGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            6777777776655443    22335555554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.32  E-value=0.66  Score=39.68  Aligned_cols=95  Identities=13%  Similarity=-0.040  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA--DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      ..|..+...+...|++++|+..|++.....-.|  ...++..+-..+...|+.++|.+.++...... .....++..+..
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~  114 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence            466667777777888888888888876543222  12466666677788888888888887665443 223444555555


Q ss_pred             HHH-------hCCCHHHHHHHHHHH
Q 010739          420 GYI-------KGGHINDAAETLTKM  437 (502)
Q Consensus       420 ~~~-------~~g~~~~A~~l~~~m  437 (502)
                      .|.       +.|++++|...+++-
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            555       677777666665543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=95.27  E-value=2.7  Score=39.58  Aligned_cols=294  Identities=13%  Similarity=0.005  Sum_probs=149.9

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHH--
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVI--  198 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li--  198 (502)
                      ..+.-.|++ ..|+.-|....+.   |+..|-++.+.....+     ..|+-..|+.=|....+  ++||-.  .+-|  
T Consensus        46 k~lla~~Q~-sDALt~yHaAve~---dp~~Y~aifrRaT~yL-----AmGksk~al~Dl~rVle--lKpDF~--~ARiQR  112 (504)
T KOG0624|consen   46 KELLARGQL-SDALTHYHAAVEG---DPNNYQAIFRRATVYL-----AMGKSKAALQDLSRVLE--LKPDFM--AARIQR  112 (504)
T ss_pred             HHHHHhhhH-HHHHHHHHHHHcC---CchhHHHHHHHHHHHh-----hhcCCccchhhHHHHHh--cCccHH--HHHHHh
Confidence            334445667 4777777766554   3444444444222111     34555555554444443  456542  2222  


Q ss_pred             -HHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc-cCCCCchH-------HHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739          199 -SLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG-QQGGPTGY-------LAWKMMVEGKYVDAIKLVIHLRESGLKPEV  269 (502)
Q Consensus       199 -~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~-~~~~~~~~-------~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~  269 (502)
                       ..+.+.|.+++|..=|+...+..  |+..+-.- +....+.-       -+.++.-+|+...|+++...+.+- ..-|.
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda  189 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDA  189 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccchh
Confidence             34568888888888888887665  22111110 00000000       122223358888899888888764 33466


Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE  345 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~  345 (502)
                      ..|-.--.+|... |++..|+.   +| ....+..|  ...|  -+-..+-. |+.+.++...++-.+-......  +|.
T Consensus       190 ~l~~~Rakc~i~~-~e~k~AI~---Dlk~askLs~DnTe~~y--kis~L~Y~vgd~~~sL~~iRECLKldpdHK~--Cf~  261 (504)
T KOG0624|consen  190 SLRQARAKCYIAE-GEPKKAIH---DLKQASKLSQDNTEGHY--KISQLLYTVGDAENSLKEIRECLKLDPDHKL--CFP  261 (504)
T ss_pred             HHHHHHHHHHHhc-CcHHHHHH---HHHHHHhccccchHHHH--HHHHHHHhhhhHHHHHHHHHHHHccCcchhh--HHH
Confidence            7777777888888 78888844   55 23333332  2333  35555666 8888888777665544322211  221


Q ss_pred             H---H---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 010739          346 R---L---------LAMYICAGRGLEAERQLWEMKLVGKEADGDLYDI---VLAICASQNEGSAVSRLLSRIEVMNSLCK  410 (502)
Q Consensus       346 ~---l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---li~~~~~~~~~~~a~~l~~~m~~~~~~p~  410 (502)
                      .   +         +......+++-++.+-.+...+..-.-..++||.   +-.++...+.+.+|.+...+.....  |+
T Consensus       262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~  339 (504)
T KOG0624|consen  262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PD  339 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--ch
Confidence            1   1         1112224445555554444443322212233332   2234444555666665555554332  33


Q ss_pred             -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          411 -KKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       411 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                       ..++.-=..+|.-...+|.|..=|+...+.
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence             555555555666666666666666665443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.02  E-value=5.1  Score=41.40  Aligned_cols=255  Identities=13%  Similarity=0.081  Sum_probs=144.2

Q ss_pred             CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH----------HhcCcHHHHHHHH
Q 010739          145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLY----------WEMEKKERAVLFV  214 (502)
Q Consensus       145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~----------~~~g~~~~A~~l~  214 (502)
                      .|.+..|..+...+.        ..-.++-|...|-.....   |.+.....|-..+          +--|++++|++++
T Consensus       689 nPHprLWrllAe~Al--------~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~y  757 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYAL--------FKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLY  757 (1189)
T ss_pred             CCchHHHHHHHHHHH--------HHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhh
Confidence            488899999988666        677777777776544332   2221111111111          1248899999999


Q ss_pred             HHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhccccHHHHH
Q 010739          215 KAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE----VYSYLIALTAVVKELNEFGKAL  290 (502)
Q Consensus       215 ~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~li~~~~~~~~~~~~a~  290 (502)
                      -+|-++++                 .+--..+-|+|-.+.++++.   .|-..|    ...|+.+-..++.. .++++|.
T Consensus       758 ld~drrDL-----------------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~-~~We~A~  816 (1189)
T KOG2041|consen  758 LDADRRDL-----------------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEM-MEWEEAA  816 (1189)
T ss_pred             hccchhhh-----------------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            99987772                 23334445777666665542   222112    35677777777777 6788887


Q ss_pred             HHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          291 RKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       291 ~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      +.+....      +  +-  -.+.++-+ ..+++-+.+-.     ..|. +....-.|-.++...|.-++|.+.|-+-. 
T Consensus       817 ~yY~~~~------~--~e--~~~ecly~le~f~~LE~la~-----~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s-  879 (1189)
T KOG2041|consen  817 KYYSYCG------D--TE--NQIECLYRLELFGELEVLAR-----TLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS-  879 (1189)
T ss_pred             HHHHhcc------c--hH--hHHHHHHHHHhhhhHHHHHH-----hcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc-
Confidence            7664431      1  11  24555444 44444444322     1233 22455667777777777777776664322 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          370 VGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL-----------CKKKTLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       370 ~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                         .|     -..+..|....++.+|.++-+......+.           .+..+. --|..+-++|++=+|-+++.+|-
T Consensus       880 ---~p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qma  950 (1189)
T KOG2041|consen  880 ---LP-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMA  950 (1189)
T ss_pred             ---Cc-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHh
Confidence               12     23456666666776666654322111100           011111 13556677888888888888886


Q ss_pred             H----CCCCCCHHHHHHHHHHHH
Q 010739          439 D----LGLYPEYMDRVAVLQGLR  457 (502)
Q Consensus       439 ~----~g~~p~~~t~~~ll~~~~  457 (502)
                      +    ++.+|-...-..++.|+.
T Consensus       951 e~e~~K~~p~lr~KklYVL~AlL  973 (1189)
T KOG2041|consen  951 EREQEKYVPYLRLKKLYVLGALL  973 (1189)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHH
Confidence            5    456666666556666664

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.99  E-value=6  Score=42.09  Aligned_cols=216  Identities=16%  Similarity=0.149  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhh
Q 010739           85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYF--SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSW  161 (502)
Q Consensus        85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~  161 (502)
                      .|..|....+.+. ..|+            ..|..++.++  .|.|+. ++|..+++.....+.-|..|..++-.++-  
T Consensus        24 qfkkal~~~~kllkk~Pn------------~~~a~vLkaLsl~r~gk~-~ea~~~Le~~~~~~~~D~~tLq~l~~~y~--   88 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPN------------ALYAKVLKALSLFRLGKG-DEALKLLEALYGLKGTDDLTLQFLQNVYR--   88 (932)
T ss_pred             HHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHhcCc-hhHHHHHhhhccCCCCchHHHHHHHHHHH--
Confidence            3777777776655 4454            3367777765  577899 89999999887777448889999988887  


Q ss_pred             hhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHH
Q 010739          162 VKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLA  241 (502)
Q Consensus       162 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~  241 (502)
                            +.++.++|..+++...+  .-|+......+..+|.|.+++.+-.+.==+|-.  ..|...-           ..
T Consensus        89 ------d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~y-----------yf  147 (932)
T KOG2053|consen   89 ------DLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAY-----------YF  147 (932)
T ss_pred             ------HHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccc-----------hH
Confidence                  89999999999998765  457788888888999999988654444333322  2233221           34


Q ss_pred             HHHHH----h------C----cHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhccccHHHHHHHHH-HHHHcCCCCch
Q 010739          242 WKMMV----E------G----KYVDAIKLVIHLRESG-LKPEVYSYLIALTAVVKELNEFGKALRKLK-GYVRAGSIAEL  305 (502)
Q Consensus       242 ~~~~~----~------g----~~~~a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~~~~~~~a~~~~~-~m~~~g~~p~~  305 (502)
                      |+.+.    .      +    -..-|.++++.+...+ -.-+..-.-.-+..+-.. ++.++|++++. ...+.-..-+.
T Consensus       148 WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~-~k~~eal~~l~~~la~~l~~~~~  226 (932)
T KOG2053|consen  148 WSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQ-GKYQEALEFLAITLAEKLTSANL  226 (932)
T ss_pred             HHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhccccch
Confidence            44443    1      1    2345666777776653 111111111222233334 67999998883 33322222222


Q ss_pred             hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC
Q 010739          306 DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS  338 (502)
Q Consensus       306 ~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~  338 (502)
                      ..-+ .-++.+.+ +++.+..++-.++...+...
T Consensus       227 ~l~~-~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  227 YLEN-KKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHH-HHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            2222 34566777 89999998888888777544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.98  E-value=0.72  Score=38.34  Aligned_cols=65  Identities=20%  Similarity=0.143  Sum_probs=35.4

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL-----VGKEADGDL  378 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t  378 (502)
                      ++..+.. |+.++|.+....+.......  ...|-.+|.+|...|+..+|.+.|+++..     .|+.|+..|
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~--E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALALDPYD--EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            4444455 77777777666655554332  34677777777777777777777766542     266665544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=94.94  E-value=0.33  Score=47.28  Aligned_cols=91  Identities=7%  Similarity=-0.146  Sum_probs=74.9

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL  200 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~  200 (502)
                      ..+...|++ +.|++.|+...+...-+...|..+-.++.        ..|++++|+..++...+.. +.+...|..+-.+
T Consensus        10 ~~a~~~~~~-~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~--------~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~   79 (356)
T PLN03088         10 KEAFVDDDF-ALAVDLYTQAIDLDPNNAELYADRAQANI--------KLGNFTEAVADANKAIELD-PSLAKAYLRKGTA   79 (356)
T ss_pred             HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence            445567889 89999999999887446677766666566        8999999999999998753 2367789999999


Q ss_pred             HHhcCcHHHHHHHHHHHHHcC
Q 010739          201 YWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       201 ~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      |.+.|++++|...|++..+.+
T Consensus        80 ~~~lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         80 CMKLEEYQTAKAALEKGASLA  100 (356)
T ss_pred             HHHhCCHHHHHHHHHHHHHhC
Confidence            999999999999999988755

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=94.88  E-value=0.52  Score=40.33  Aligned_cols=61  Identities=13%  Similarity=-0.044  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHHH
Q 010739          271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAIQ  333 (502)
Q Consensus       271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~~  333 (502)
                      .|..+...+... +++++|+..++......-.+.  ..++. .+-..|.. |+.++|.+.+++...
T Consensus        37 ~~~~~g~~~~~~-g~~~~A~~~~~~al~l~~~~~~~~~~~~-~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         37 TYYRDGMSAQSE-GEYAEALQNYYEAMRLEIDPYDRSYILY-NIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHhccccchhhHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444 566666666655533321111  11222 23333444 555555555555444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=94.82  E-value=2  Score=35.85  Aligned_cols=90  Identities=11%  Similarity=0.007  Sum_probs=63.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDI-VLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                      +-..+...|++++|..+|+-...  +.|....|.- |=.+|-..|++++|...+........ -|...+-.+-.++...|
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence            34455668888888888887764  4555444433 33555666888888888887776663 46777777888888888


Q ss_pred             CHHHHHHHHHHHHH
Q 010739          426 HINDAAETLTKMLD  439 (502)
Q Consensus       426 ~~~~A~~l~~~m~~  439 (502)
                      +.+.|.+.|+..+.
T Consensus       118 ~~~~A~~aF~~Ai~  131 (157)
T PRK15363        118 NVCYAIKALKAVVR  131 (157)
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888887554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=94.79  E-value=1.1  Score=38.41  Aligned_cols=83  Identities=11%  Similarity=0.037  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739          271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE--LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL  347 (502)
Q Consensus       271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  347 (502)
                      .|..+-..+... |++++|...+++..+..-.+.  ...+. .+...|.+ |++++|.+.+.+.......  +...+..+
T Consensus        37 ~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l  112 (172)
T PRK02603         37 VYYRDGMSAQAD-GEYAEALENYEEALKLEEDPNDRSYILY-NMGIIYASNGEHDKALEYYHQALELNPK--QPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhccchHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHH
Confidence            445555555555 677777777776644332221  12222 34445566 7777777777666554322  23355555


Q ss_pred             HHHHHHcCCh
Q 010739          348 LAMYICAGRG  357 (502)
Q Consensus       348 i~~~~~~g~~  357 (502)
                      ...|...|+.
T Consensus       113 g~~~~~~g~~  122 (172)
T PRK02603        113 AVIYHKRGEK  122 (172)
T ss_pred             HHHHHHcCCh
Confidence            5556665553

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.75  E-value=1.6  Score=42.56  Aligned_cols=146  Identities=13%  Similarity=0.111  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      ..|...|++.-+. ..++.|..+|-+..+.| +.+++.+++ ++|..++.|+..-|.++|+--... .++ +.+--+-.+
T Consensus       398 ~v~C~~~N~v~r~-~Gl~aaR~~F~k~rk~~~~~h~vyi~~-A~~E~~~~~d~~ta~~ifelGl~~-f~d-~~~y~~kyl  473 (660)
T COG5107         398 FVFCVHLNYVLRK-RGLEAARKLFIKLRKEGIVGHHVYIYC-AFIEYYATGDRATAYNIFELGLLK-FPD-STLYKEKYL  473 (660)
T ss_pred             hHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCCcceeeeH-HHHHHHhcCCcchHHHHHHHHHHh-CCC-chHHHHHHH
Confidence            4566677777777 56888888888887777 567788887 788888888888888888642211 122 222334455


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGKEAD--GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI  422 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~  422 (502)
                      .-+...++-+.|..+|+.-.+. +.-+  ...|..+|+.-..-|++..+..+-+.|.+.  .|...+.......|.
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~  546 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence            6667778888888888843321 1112  356888888878888887777766666543  344444444444444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.69  E-value=6.2  Score=40.81  Aligned_cols=46  Identities=15%  Similarity=0.069  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 010739          412 KTLSWLLRGYIKGGHINDAAETLTKMLD-LGLYPEYMDRVAVLQGLR  457 (502)
Q Consensus       412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~  457 (502)
                      .+|-.|.+--...|.++.|+..--.+.+ ..+-|....|..+.-+-|
T Consensus      1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC 1068 (1189)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh
Confidence            3444455666677888888876555544 246677777776655544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=94.42  E-value=0.15  Score=35.84  Aligned_cols=64  Identities=16%  Similarity=0.145  Sum_probs=49.7

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 010739          124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVI  198 (502)
Q Consensus       124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li  198 (502)
                      .+.|++ +.|+++|+.+....+-+...+-.+..++.        +.|++++|..+++.+...  .|+...|..++
T Consensus         2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYL--------KQGQYDEAEELLERLLKQ--DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHH--------HTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred             hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence            467888 89999999999887447777778888788        999999999999988774  45545555544

...

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.39  E-value=2.4  Score=34.85  Aligned_cols=124  Identities=15%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      .+|..+.+ +.......+++.+...+..  +...+|.++..|++.+. .+.++.+..      ..+.+....++..|.+.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~--~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNSE--NPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCcc--chhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            35666665 6667777777766666532  33377777777776532 334444432      12334444566777776


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG-GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      +.++++..++..+..         |...+..+... ++++.|.+++.+      .-+...|..++..+..
T Consensus        83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~  137 (140)
T smart00299       83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD  137 (140)
T ss_pred             CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence            766666666655432         12223333333 667777776665      1245566666666543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=94.33  E-value=0.2  Score=34.94  Aligned_cols=52  Identities=12%  Similarity=-0.135  Sum_probs=33.3

Q ss_pred             Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      +.+ |++++|.+.|++.+.....  +...|..+-..+.+.|++++|...|++..+
T Consensus         7 ~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    7 LYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444 7777777777766665522  344666677777777777777777777653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=94.28  E-value=1.8  Score=36.11  Aligned_cols=50  Identities=16%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY  296 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m  296 (502)
                      ...|++++|.++|+-...-  .|....|-.=+.++++.-+++++|+..+...
T Consensus        46 y~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A   95 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRA   95 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3345555555555544432  3333333333333333324455555544444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.26  E-value=7.4  Score=39.91  Aligned_cols=177  Identities=15%  Similarity=0.113  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHcCCChHHHHHH---HHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739          115 ELQLVLVYFSQEGRDSWCALEV---FEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG  190 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~---~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~  190 (502)
                      +++..-.+|.+.++.  .-+++   +++|+++| .|+.........           -.|++++|.++|.   +.|..  
T Consensus       600 ~f~~ARkAY~rVRdl--~~L~li~EL~~~k~rge~P~~iLlA~~~A-----------y~gKF~EAAklFk---~~G~e--  661 (1081)
T KOG1538|consen  600 DFETARKAYIRVRDL--RYLELISELEERKKRGETPNDLLLADVFA-----------YQGKFHEAAKLFK---RSGHE--  661 (1081)
T ss_pred             hhHHHHHHHHHHhcc--HHHHHHHHHHHHHhcCCCchHHHHHHHHH-----------hhhhHHHHHHHHH---HcCch--
Confidence            467777788877766  33343   56677788 687765543332           5688999998887   45543  


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHH-------HHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHH----
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKA-------VLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIH----  259 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~-------m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~----  259 (502)
                          |..+.+|...+.++.|.+++..       |.-+.-.  .-.|+.+   .|-...--...+|+.++|..+.-+    
T Consensus       662 ----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA--~WAr~~k---ePkaAAEmLiSaGe~~KAi~i~~d~gW~  732 (1081)
T KOG1538|consen  662 ----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRA--DWARNIK---EPKAAAEMLISAGEHVKAIEICGDHGWV  732 (1081)
T ss_pred             ----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH--HHhhhcC---CcHHHHHHhhcccchhhhhhhhhcccHH
Confidence                3455666666666666665421       1100000  0000000   000112222234666666654321    


Q ss_pred             -H-HHcCCCC---CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHH
Q 010739          260 -L-RESGLKP---EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSS  329 (502)
Q Consensus       260 -m-~~~g~~p---~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~  329 (502)
                       | .+-+-+.   +..+...+-.-+.+. ..+.-|-++|..|-+.          ..++.+... +++++|..+-+
T Consensus       733 d~lidI~rkld~~ere~l~~~a~ylk~l-~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe  797 (1081)
T KOG1538|consen  733 DMLIDIARKLDKAEREPLLLCATYLKKL-DSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAE  797 (1081)
T ss_pred             HHHHHHHhhcchhhhhHHHHHHHHHhhc-cccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhh
Confidence             1 1112222   223333333334444 5566777777766221          146677667 88888887653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=94.08  E-value=0.33  Score=33.79  Aligned_cols=53  Identities=4%  Similarity=0.025  Sum_probs=46.2

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      +.|++++|...|++..+.. +-+...+..+-.++.+.|++++|...|++..+..
T Consensus         9 ~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            7899999999999999875 3377889999999999999999999999987654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.97  E-value=1.6  Score=39.47  Aligned_cols=64  Identities=8%  Similarity=-0.088  Sum_probs=29.4

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG  231 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~  231 (502)
                      ..+.+.-...++.+..+..-+-+......|.+.-.+.||.+.|...|++.++..-+.|..+++.
T Consensus       189 G~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~  252 (366)
T KOG2796|consen  189 GMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI  252 (366)
T ss_pred             cchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence            3444444444444444443333444444455555555555555555554444333444444443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.88  E-value=6.1  Score=40.61  Aligned_cols=71  Identities=13%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010739          375 DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDR  449 (502)
Q Consensus       375 ~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  449 (502)
                      +...|.++--.....|++++|...++.....+  |+...|..+-..+...|+.++|.+.+++....  .|...||
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~  489 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL  489 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence            34555555444445677777777777766665  56667777777777888888888877776543  3444444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.83  E-value=2.5  Score=34.77  Aligned_cols=127  Identities=17%  Similarity=0.099  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      ...++..+.+.+.. .....+++++...+..+...+|.++..++        +. +-......++.      ..+.....
T Consensus        10 ~~~vv~~~~~~~~~-~~l~~yLe~~~~~~~~~~~~~~~li~ly~--------~~-~~~~ll~~l~~------~~~~yd~~   73 (140)
T smart00299       10 VSEVVELFEKRNLL-EELIPYLESALKLNSENPALQTKLIELYA--------KY-DPQKEIERLDN------KSNHYDIE   73 (140)
T ss_pred             HHHHHHHHHhCCcH-HHHHHHHHHHHccCccchhHHHHHHHHHH--------HH-CHHHHHHHHHh------ccccCCHH
Confidence            56777777777777 78888888887776557778888888776        33 23344444442      12333344


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh-CcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE-GKYVDAIKLVIHLRESGLKPEVYSYLI  274 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~ty~~  274 (502)
                      .+++.|-+.+-++++.-++..+....                 -.+..++.. ++++.|.+++.+-      -+...|..
T Consensus        74 ~~~~~c~~~~l~~~~~~l~~k~~~~~-----------------~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~  130 (140)
T smart00299       74 KVGKLCEKAKLYEEAVELYKKDGNFK-----------------DAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAE  130 (140)
T ss_pred             HHHHHHHHcCcHHHHHHHHHhhcCHH-----------------HHHHHHHHcccCHHHHHHHHHhC------CCHHHHHH
Confidence            57777778888888888877764322                 023333333 6777777776641      24556666


Q ss_pred             HHHHHHh
Q 010739          275 ALTAVVK  281 (502)
Q Consensus       275 li~~~~~  281 (502)
                      ++..+..
T Consensus       131 ~~~~~l~  137 (140)
T smart00299      131 VLKALLD  137 (140)
T ss_pred             HHHHHHc
Confidence            6665543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.74  E-value=6  Score=37.05  Aligned_cols=168  Identities=14%  Similarity=0.003  Sum_probs=88.0

Q ss_pred             hhccHhhHHHHHHHHhhCC--CCCCH------HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchH
Q 010739          168 EERGVGDVVDLLVDMDCVG--LKPGF------SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGY  239 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g--~~p~~------~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~  239 (502)
                      +.|+++.|..++.+....-  ..|+.      ..||.-...+.+..+++.|..++++-.                     
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~---------------------   63 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAY---------------------   63 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH---------------------
Confidence            7788888888888776643  22322      334444444444436666666655432                     


Q ss_pred             HHHHHHHhCcHHHHHHHHHH-HHHcCCCCCH-----hHHHHHHHHHHhcc--ccHHHHHHHHHHH-HHcCCCCchhchHH
Q 010739          240 LAWKMMVEGKYVDAIKLVIH-LRESGLKPEV-----YSYLIALTAVVKEL--NEFGKALRKLKGY-VRAGSIAELDGKNL  310 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~-m~~~g~~p~~-----~ty~~li~~~~~~~--~~~~~a~~~~~~m-~~~g~~p~~~~~~~  310 (502)
                                     ++++. -......|+.     .++..++.++...+  ...++|.++++.+ .+.|-.|.....  
T Consensus        64 ---------------~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L--  126 (278)
T PF08631_consen   64 ---------------DILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL--  126 (278)
T ss_pred             ---------------HHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH--
Confidence                           22211 0001122222     34455556665552  2355666666666 344444444432  


Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCCH
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC--AGRGLEAERQLWEMKLVGKEADG  376 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~  376 (502)
                       -+..+.+ ++.+++.+++.+|+..-.....  .+..++..+-+  ......|...+..+....+.|..
T Consensus       127 -~l~il~~~~~~~~~~~~L~~mi~~~~~~e~--~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  127 -KLEILLKSFDEEEYEEILMRMIRSVDHSES--NFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             -HHHHHhccCChhHHHHHHHHHHHhcccccc--hHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence             3444555 7778888888777776542222  45544544422  23334566666666666555554

It is also involved in sporulation [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.72  E-value=4  Score=41.42  Aligned_cols=151  Identities=11%  Similarity=0.049  Sum_probs=101.0

Q ss_pred             hCcHHHHHHHHHHHHHc-CCCCCH-----hHHHHHHHHHHhc---cccHHHHHHHHHHHHHcCCCCchhchHHHHHHH--
Q 010739          247 EGKYVDAIKLVIHLRES-GLKPEV-----YSYLIALTAVVKE---LNEFGKALRKLKGYVRAGSIAELDGKNLGLIEK--  315 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~-g~~p~~-----~ty~~li~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~--  315 (502)
                      .|+-+.+++++.+-.+. ++.-..     -+|..++..++..   +...+.|.+++..+.+.  -|+...+.  +..+  
T Consensus       201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl--~~~gR~  276 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL--FFEGRL  276 (468)
T ss_pred             CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH--HHHHHH
Confidence            58999999988876543 333222     3566667666665   36789999999988554  47887774  4444  


Q ss_pred             Hhc-CcHHhHHHHHHHHHH--cCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC
Q 010739          316 YQS-DLLADGSRLSSWAIQ--EGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLA-ICASQNE  391 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~~~  391 (502)
                      +.. |++++|.+.|++...  ...+......+--+.-.+.-.+++++|.+.|.++.+.. .....+|.-+.. ++...|+
T Consensus       277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~  355 (468)
T PF10300_consen  277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGR  355 (468)
T ss_pred             HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhcc
Confidence            555 999999999997654  22444455566666667888999999999999998752 223333333332 3344566


Q ss_pred             h-------hHHHHHHHHH
Q 010739          392 G-------SAVSRLLSRI  402 (502)
Q Consensus       392 ~-------~~a~~l~~~m  402 (502)
                      .       ++|.+++...
T Consensus       356 ~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  356 EEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             chhhhhhHHHHHHHHHHH
Confidence            6       6777777544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=93.69  E-value=9.6  Score=39.21  Aligned_cols=146  Identities=12%  Similarity=-0.019  Sum_probs=81.0

Q ss_pred             CCCCCHhHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc----C-----cHHhHHHHHHH
Q 010739          264 GLKPEVYSYLIALTAVVKE----LNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS----D-----LLADGSRLSSW  330 (502)
Q Consensus       264 g~~p~~~ty~~li~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~----g-----~~~~a~~~~~~  330 (502)
                      +...|...|...+.|....    ..+...|..+|++.++.  +|+-......+.-+|..    +     ++..+.+..++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            3445667788777775543    13466777777776443  45543211112111211    1     12223333332


Q ss_pred             HHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 010739          331 AIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK  410 (502)
Q Consensus       331 m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~  410 (502)
                      .......+.+...|.++-......|++++|...+++..+.+  |+...|..+-..+...|+.++|.+.++.....+  |.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~  485 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PG  485 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC
Confidence            22222222333566666555556788888888888877654  677777777778888888888887776665443  44


Q ss_pred             HHHHH
Q 010739          411 KKTLS  415 (502)
Q Consensus       411 ~~~~~  415 (502)
                      ..||.
T Consensus       486 ~pt~~  490 (517)
T PRK10153        486 ENTLY  490 (517)
T ss_pred             CchHH
Confidence            44543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.64  E-value=2.3  Score=43.17  Aligned_cols=167  Identities=14%  Similarity=0.069  Sum_probs=109.6

Q ss_pred             hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-Ch------HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739          113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRV-DN------ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV  185 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~-~~------~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~  185 (502)
                      |..+..+++.+.=.|+- +.+++.+..-.+.+.. .+      -.|+.++..++..-.    ....++.|.++++.+.+.
T Consensus       188 Pp~~~kll~~vGF~gdR-~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~----~~~~~~~a~~lL~~~~~~  262 (468)
T PF10300_consen  188 PPKVLKLLSFVGFSGDR-ELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG----EDVPLEEAEELLEEMLKR  262 (468)
T ss_pred             CHHHHHHHhhcCcCCcH-HHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc----cCCCHHHHHHHHHHHHHh
Confidence            66788888888888888 7999988887665422 22      256666665653200    367899999999999874


Q ss_pred             CCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHHHHcCCC-CC--CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHH
Q 010739          186 GLKPGFSMIEKVI-SLYWEMEKKERAVLFVKAVLSRGIA-YA--EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLR  261 (502)
Q Consensus       186 g~~p~~~~y~~li-~~~~~~g~~~~A~~l~~~m~~~~~~-p~--~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~  261 (502)
                        -|+...|.-.- +.+...|++++|.+.|++....... +.  ...|--        +.|+++..++|++|.+.|..+.
T Consensus       263 --yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E--------l~w~~~~~~~w~~A~~~f~~L~  332 (468)
T PF10300_consen  263 --YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE--------LAWCHMFQHDWEEAAEYFLRLL  332 (468)
T ss_pred             --CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH--------HHHHHHHHchHHHHHHHHHHHH
Confidence              46776665444 4456789999999999976532111 11  111111        6888888999999999999998


Q ss_pred             Hc-CCCCCHhHHHHHHHHHHhccccH-------HHHHHHHHHH
Q 010739          262 ES-GLKPEVYSYLIALTAVVKELNEF-------GKALRKLKGY  296 (502)
Q Consensus       262 ~~-g~~p~~~ty~~li~~~~~~~~~~-------~~a~~~~~~m  296 (502)
                      +. ..  +..+|.-+..+|.-.-++.       ++|.++|.+.
T Consensus       333 ~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  333 KESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             hcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            75 23  3344444444443332445       6666666655

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.15  E-value=3.8  Score=32.98  Aligned_cols=136  Identities=13%  Similarity=0.207  Sum_probs=68.4

Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLL  321 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~  321 (502)
                      ...|.+++..++..+....   -+..-||.+|.-.... -+-+-..+.++..   |---|.....+  .++..|.+ |..
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDa-a~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~   85 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDA-ADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKL   85 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH---HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchh-hchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcch
Confidence            4578889999988887765   3556677777766666 4555554544443   22222222110  23333433 211


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                                         ....+..+..+.+.|+-++-.+++.++.. .-++++...-.+-.+|.+.|+..++.+++.+
T Consensus        86 -------------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~  145 (161)
T PF09205_consen   86 -------------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKE  145 (161)
T ss_dssp             --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence                               12344455666666666666666666654 2345555555555666666666666666666


Q ss_pred             HHHcCC
Q 010739          402 IEVMNS  407 (502)
Q Consensus       402 m~~~~~  407 (502)
                      .-+.|.
T Consensus       146 ACekG~  151 (161)
T PF09205_consen  146 ACEKGL  151 (161)
T ss_dssp             HHHTT-
T ss_pred             HHHhch
Confidence            555553

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=93.08  E-value=3.8  Score=32.75  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=36.1

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHhccccHHHHHHHHHHHH
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKPEV--YSYLIALTAVVKELNEFGKALRKLKGYV  297 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~li~~~~~~~~~~~~a~~~~~~m~  297 (502)
                      .|.+-..|+.++|+.+|++-...|.....  ..+-.+-..+... |++++|..++++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~   65 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEAL   65 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            44444567888888888877777765542  3444455556666 67777777777664

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=93.04  E-value=0.65  Score=32.65  Aligned_cols=65  Identities=9%  Similarity=0.040  Sum_probs=53.4

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHc
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME-KKERAVLFVKAVLSR  220 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g-~~~~A~~l~~~m~~~  220 (502)
                      +..+|..+-..+.        ..|++++|+..|++..+.. +-+...|..+-.+|.+.| ++++|.+.+++..+.
T Consensus         2 ~a~~~~~~g~~~~--------~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYF--------QQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHH--------HTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            3456676667677        8999999999999998864 336788999999999999 799999999887653

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.01  E-value=7.1  Score=35.71  Aligned_cols=81  Identities=7%  Similarity=-0.046  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHH
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSY  272 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty  272 (502)
                      .|..-. .+.+.|++++|.+.|+++....-.+.... ..     .-.+...+...+++++|...|++..+.--.-...-|
T Consensus        35 ~Y~~A~-~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~-~a-----~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         35 IYATAQ-QKLQDGNWKQAITQLEALDNRYPFGPYSQ-QV-----QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             HHHHHH-HHHHCCCHHHHHHHHHHHHHhCCCChHHH-HH-----HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence            444333 34567888888888888876542211000 00     001345556678888888888888766222222344


Q ss_pred             HHHHHHHH
Q 010739          273 LIALTAVV  280 (502)
Q Consensus       273 ~~li~~~~  280 (502)
                      ...+.|.+
T Consensus       108 a~Y~~g~~  115 (243)
T PRK10866        108 VLYMRGLT  115 (243)
T ss_pred             HHHHHHHh
Confidence            44555544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.82  E-value=14  Score=38.66  Aligned_cols=84  Identities=14%  Similarity=0.165  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI  422 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~  422 (502)
                      +-+--+.-+...|+-.+|.++-.+.+    -||-..|..=+.+++..+++++.+++-+.++      ...-|.-++.+|.
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~  755 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL  755 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence            33334444555666666666555443    4666666666666666666666433322222      1334555666666


Q ss_pred             hCCCHHHHHHHHHH
Q 010739          423 KGGHINDAAETLTK  436 (502)
Q Consensus       423 ~~g~~~~A~~l~~~  436 (502)
                      +.|+.++|.+.+-+
T Consensus       756 ~~~n~~EA~KYipr  769 (829)
T KOG2280|consen  756 KQGNKDEAKKYIPR  769 (829)
T ss_pred             hcccHHHHhhhhhc
Confidence            67777777666665

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=92.80  E-value=0.81  Score=32.15  Aligned_cols=52  Identities=17%  Similarity=0.170  Sum_probs=21.1

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q 010739          384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG-HINDAAETLTK  436 (502)
Q Consensus       384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~  436 (502)
                      ..+...|++++|...|+...... .-+...|..+-.+|.+.| ++++|.+.+++
T Consensus        11 ~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen   11 QIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            33334444444444443333332 113333444444444444 34444444444

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=92.76  E-value=17  Score=39.46  Aligned_cols=122  Identities=12%  Similarity=-0.041  Sum_probs=59.0

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH--HHH
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLA--ICA  387 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~--~~~  387 (502)
                      |-.-|+. .++..|.+.|....+-  .+.|...+......|+....+++|+.+.-.--  ...| -...+|.+-.  .+-
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~--qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAA--QKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHh--hhchHHHHHhhhhhcccccc
Confidence            4444555 5666666666544332  23334466666666666666776666622111  1111 1112222221  222


Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          388 SQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       388 ~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                      ..++...+..-|+...... +-|...|..+..+|.+.|++..|.++|.+..
T Consensus       574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs  623 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS  623 (1238)
T ss_pred             CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence            3344444443333332222 1245555556777777777777777776543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.69  E-value=5.7  Score=36.07  Aligned_cols=147  Identities=16%  Similarity=0.040  Sum_probs=96.2

Q ss_pred             hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHH
Q 010739          173 GDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVD  252 (502)
Q Consensus       173 ~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~  252 (502)
                      +..+++|++=.       ..+-+.+++++.-.|.+.-...++++..+++-..+..--..        +..-.+..|+.+.
T Consensus       166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~--------Lgr~~MQ~GD~k~  230 (366)
T KOG2796|consen  166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG--------LGRISMQIGDIKT  230 (366)
T ss_pred             hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH--------HHHHHHhcccHHH
Confidence            55566655432       23566777888888888888888888887663333322222        5556677999999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHH---Hhcc-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHH
Q 010739          253 AIKLVIHLRESGLKPEVYSYLIALTAV---VKEL-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLS  328 (502)
Q Consensus       253 a~~~~~~m~~~g~~p~~~ty~~li~~~---~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~  328 (502)
                      |...|++..+..-+.|..+++.++.--   .-.| +++.+|...+.+.....-.--...-|-+|+-+|. |+..+|.+..
T Consensus       231 a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~l~DAiK~~  309 (366)
T KOG2796|consen  231 AEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GKLKDALKQL  309 (366)
T ss_pred             HHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HHHHHHHHHH
Confidence            999999998887777887777765432   2223 7888888878777433211111111224444443 7999999999


Q ss_pred             HHHHHcC
Q 010739          329 SWAIQEG  335 (502)
Q Consensus       329 ~~m~~~~  335 (502)
                      +.|++.-
T Consensus       310 e~~~~~~  316 (366)
T KOG2796|consen  310 EAMVQQD  316 (366)
T ss_pred             HHHhccC
Confidence            9888765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=92.34  E-value=10  Score=35.87  Aligned_cols=203  Identities=11%  Similarity=0.036  Sum_probs=95.2

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010739          123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYW  202 (502)
Q Consensus       123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~  202 (502)
                      +.-.|+. ..|++....+.+...=|...|..-..++.        ..|....|+.=++..-+..- -|..++--+-..+.
T Consensus       165 ~~~~GD~-~~ai~~i~~llEi~~Wda~l~~~Rakc~i--------~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y  234 (504)
T KOG0624|consen  165 ASGSGDC-QNAIEMITHLLEIQPWDASLRQARAKCYI--------AEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLY  234 (504)
T ss_pred             HhcCCch-hhHHHHHHHHHhcCcchhHHHHHHHHHHH--------hcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHH
Confidence            3344555 45555555555444225555555555444        55555555554444333211 23334444445555


Q ss_pred             hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739          203 EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE  282 (502)
Q Consensus       203 ~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~  282 (502)
                      ..|+.+.++....+-...+  ||..            .++.+.  ..+.+..+.++.|++.                ...
T Consensus       235 ~vgd~~~sL~~iRECLKld--pdHK------------~Cf~~Y--KklkKv~K~les~e~~----------------ie~  282 (504)
T KOG0624|consen  235 TVGDAENSLKEIRECLKLD--PDHK------------LCFPFY--KKLKKVVKSLESAEQA----------------IEE  282 (504)
T ss_pred             hhhhHHHHHHHHHHHHccC--cchh------------hHHHHH--HHHHHHHHHHHHHHHH----------------Hhh
Confidence            5566555555555444332  3310            122211  1222333333333221                122


Q ss_pred             cccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHH
Q 010739          283 LNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLE  359 (502)
Q Consensus       283 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~  359 (502)
                       +++.++++--+...+..-+...+.++.  .+-..|.. |.+.+|.+...+..+..  +.|+.++.---.+|.-...++.
T Consensus       283 -~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~  359 (504)
T KOG0624|consen  283 -KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDD  359 (504)
T ss_pred             -hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHH
Confidence             345555554444433322212222321  12223444 78888887776655543  2234466555666666677777


Q ss_pred             HHHHHHHHHHC
Q 010739          360 AERQLWEMKLV  370 (502)
Q Consensus       360 A~~l~~~m~~~  370 (502)
                      |+.=|+...+.
T Consensus       360 AI~dye~A~e~  370 (504)
T KOG0624|consen  360 AIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHhc
Confidence            77777766543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=92.34  E-value=3.6  Score=38.09  Aligned_cols=96  Identities=9%  Similarity=-0.000  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CC---CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SI---AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVV  343 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~---p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~  343 (502)
                      ..|...+..+.+. +++++|...|+.+++.- -.   |+.. |  .+-..|.. |++++|...|+.++..... +.....
T Consensus       144 ~~Y~~A~~l~~~~-~~y~~Ai~af~~fl~~yP~s~~a~~A~-y--~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        144 TDYNAAIALVQDK-SRQDDAIVAFQNFVKKYPDSTYQPNAN-Y--WLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHHHHHHCcCCcchHHHH-H--HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            3455555444555 56777777777764331 11   1221 2  24445555 7777777777776654311 111124


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          344 HERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      +-.+...+...|+.++|..+|++..+
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44445556667777777777776654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=92.33  E-value=4.7  Score=39.45  Aligned_cols=137  Identities=11%  Similarity=0.039  Sum_probs=102.2

Q ss_pred             hCcHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739          247 EGKYVDAIKLVIHLRESG-LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g-~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a  324 (502)
                      ...++.|..+|-+..+.| +.+++..|+++|.-+|..  +...|.++|+-=...  -||...|-..-+..... ++-+.|
T Consensus       410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~--d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~na  485 (660)
T COG5107         410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG--DRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENA  485 (660)
T ss_pred             HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC--CcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHH
Confidence            467899999999999998 789999999999999987  788998888643222  35555554456667777 999999


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      ..+|+..+..-....--..|..+|.-=..-|++..+..+=++|.+  +-|-..+-....+-|+-.
T Consensus       486 raLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik  548 (660)
T COG5107         486 RALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK  548 (660)
T ss_pred             HHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence            999985544331111124899999988889999999999888875  456666666666655543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.27  E-value=5.1  Score=32.27  Aligned_cols=66  Identities=21%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010739          376 GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGL  442 (502)
Q Consensus       376 ~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  442 (502)
                      ..-+...++.....|.-++..++..++.. +-.++....-.+-.+|.+-|+..++.+++.+.-+.|+
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            34445556666666766666666666554 3355666666677777777777777777777666664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=92.27  E-value=4.9  Score=37.24  Aligned_cols=116  Identities=20%  Similarity=0.157  Sum_probs=82.7

Q ss_pred             CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010739          338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDL-YDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLS  415 (502)
Q Consensus       338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t-~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~  415 (502)
                      +.|...|-.|-..|.+.|+++.|..-|..-.+. |-+|+... |...+-.-+......++.++|+++.... .-|+..-.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            346679999999999999999999999987653 44444332 2222222222334458899999888766 33677777


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      -|-..+...|++.+|...|+.|.+..  |....+..+|+.-
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie~~  270 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHHHH
Confidence            78889999999999999999999864  4444555555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.23  E-value=12  Score=36.39  Aligned_cols=80  Identities=9%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH--H---hCcHHHHHHHHHHHHHcCCCCCHh
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM--V---EGKYVDAIKLVIHLRESGLKPEVY  270 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~--~---~g~~~~a~~~~~~m~~~g~~p~~~  270 (502)
                      .++-.|....+++...++.+.|...--..-..+-+.       ...++++  +   .|+.++|++++.......-.++..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i-------~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d  218 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNI-------KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD  218 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHH-------HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence            455569999999999999999976521111111110       1233333  3   599999999999977777778888


Q ss_pred             HHHHHHHHHHhc
Q 010739          271 SYLIALTAVVKE  282 (502)
Q Consensus       271 ty~~li~~~~~~  282 (502)
                      ||..+-..|-..
T Consensus       219 ~~gL~GRIyKD~  230 (374)
T PF13281_consen  219 TLGLLGRIYKDL  230 (374)
T ss_pred             HHHHHHHHHHHH
Confidence            888777666554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.22  E-value=11  Score=37.73  Aligned_cols=158  Identities=13%  Similarity=0.070  Sum_probs=103.0

Q ss_pred             HHHHHHhCcHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739          241 AWKMMVEGKYVDAIKLVIHLR-ESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-  318 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-  318 (502)
                      ....+..|+++++.++.+.=. -..+ | ..-.+.++.-+-+. |-.+.|+++..+-         .    .--+...+ 
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~-G~~e~AL~~~~D~---------~----~rFeLAl~l  331 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKK-GYPELALQFVTDP---------D----HRFELALQL  331 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHT-T-HHHHHHHSS-H---------H----HHHHHHHHC
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHC-CCHHHHHhhcCCh---------H----HHhHHHHhc
Confidence            334455789999887775111 1112 2 44477888888888 7889998755332         1    12334455 


Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      |+++.|.++-     ....  +...|..|-....+.|+++-|++.|.+..         -|..|+-.|...|+.+...++
T Consensus       332 g~L~~A~~~a-----~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl  395 (443)
T PF04053_consen  332 GNLDIALEIA-----KELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKL  395 (443)
T ss_dssp             T-HHHHHHHC-----CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred             CCHHHHHHHH-----HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHH
Confidence            8999998853     2222  44599999999999999999999998765         367777788888999888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                      .+.....|      -+|....++.-.|++++..+++.+
T Consensus       396 ~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  396 AKIAEERG------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            87777766      366767777778999998888775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.00  E-value=2  Score=39.60  Aligned_cols=101  Identities=23%  Similarity=0.241  Sum_probs=61.4

Q ss_pred             HHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcH
Q 010739          243 KMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLL  321 (502)
Q Consensus       243 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~  321 (502)
                      .++.++++++|+..|.+-...  .| |.+-|..=-.+|++. |.++.|++                              
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~L-g~~~~AVk------------------------------  136 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKL-GEYEDAVK------------------------------  136 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHh-cchHHHHH------------------------------
Confidence            445566666666666665543  33 334444455566666 55666633                              


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI  385 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~  385 (502)
                           -.+..+..  .+....+|..|-.+|...|++++|.+-|.+-.  .+.|+..+|-.=|..
T Consensus       137 -----Dce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~aykKaL--eldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  137 -----DCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL--ELDPDNESYKSNLKI  191 (304)
T ss_pred             -----HHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh--ccCCCcHHHHHHHHH
Confidence                 22221111  11122488888888888999999998888766  478888887766643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=91.95  E-value=1.4  Score=31.38  Aligned_cols=55  Identities=20%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          385 ICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       385 ~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      .+.+.++++.|.++++.+...+. .+...+...-..|.+.|++++|.+.|++..+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            44555566666666655555441 14444444555566666666666666666543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.93  E-value=7.1  Score=33.16  Aligned_cols=130  Identities=14%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc--CcHHhHHHHHHHH
Q 010739          254 IKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS--DLLADGSRLSSWA  331 (502)
Q Consensus       254 ~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~--g~~~~a~~~~~~m  331 (502)
                      .++++.+...|+.|+...|..+|+.+.+. +....    ++.++..++-+|.......|+..-.+  .-..-|...+.++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~-~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRN-GQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence            56777777889999999999999999999 65443    56677888888887654333333222  2233333333321


Q ss_pred             HHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          332 IQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      .         ..+..++..+...|++-+|.++.+.....    +......++.+-...++...-..+++-
T Consensus        89 ~---------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f  145 (167)
T PF07035_consen   89 G---------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF  145 (167)
T ss_pred             h---------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1         15666777888888888888888765321    112224455565555555544444433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=91.80  E-value=3.4  Score=38.25  Aligned_cols=96  Identities=10%  Similarity=0.029  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCC
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVD----NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKP  189 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p  189 (502)
                      |...+..+.+.|++ +.|...|+.+.+.. |+    +..+--+-..+.        ..|++++|...|+.+.+.-  -+.
T Consensus       146 Y~~A~~l~~~~~~y-~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~--------~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        146 YNAAIALVQDKSRQ-DDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNY--------NKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHhcCCH-HHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHCCCCcc
Confidence            88888777778999 89999999999877 32    234444444444        7899999999999998641  111


Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      ....+-.+...|.+.|+.++|.++|++..+..
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            23445556667789999999999999987664

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=91.68  E-value=10  Score=34.61  Aligned_cols=170  Identities=10%  Similarity=-0.031  Sum_probs=95.4

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHH---HHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCCccccccCCCCchHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMI---EKVISLYWEMEKKERAVLFVKAVLSRGIA-YAEGDGEGQQGGPTGYLAWK  243 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y---~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~~ty~~~~~~~~~~~~~~  243 (502)
                      +.|++++|...|++....--. +....   -.+..+|-+.+++++|...+++..+..-. |++ .|        .....+
T Consensus        44 ~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~--------a~Y~~g  113 (243)
T PRK10866         44 QDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DY--------VLYMRG  113 (243)
T ss_pred             HCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HH--------HHHHHH
Confidence            789999999999999875322 22232   34567889999999999999999876522 221 11        011111


Q ss_pred             HHH-----------------hCc---HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC
Q 010739          244 MMV-----------------EGK---YVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIA  303 (502)
Q Consensus       244 ~~~-----------------~g~---~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p  303 (502)
                      .+.                 ..+   ..+|++.|+++.+.  -|+             . .-..+|...+..+... +  
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S-~ya~~A~~rl~~l~~~-l--  174 (243)
T PRK10866        114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------S-QYTTDATKRLVFLKDR-L--  174 (243)
T ss_pred             HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------C-hhHHHHHHHHHHHHHH-H--
Confidence            110                 011   12333444444333  222             2 2233333322222100 0  


Q ss_pred             chhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          304 ELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       304 ~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      -..-  ..+...|-+ |.+..|..-|+.++++- ..+......-.++.+|...|..++|......+.
T Consensus       175 a~~e--~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        175 AKYE--LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHH--HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            0000  135556777 88888888888877765 222233466677788888888888877766554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.66  E-value=12  Score=35.11  Aligned_cols=167  Identities=12%  Similarity=0.023  Sum_probs=91.5

Q ss_pred             HHcCCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhC--------CCCCC---
Q 010739          124 SQEGRDSWCALEVFEWLKKEN-RVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCV--------GLKPG---  190 (502)
Q Consensus       124 ~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~--------g~~p~---  190 (502)
                      .+.|+. +.|...+.+..... ..++.....+-+.+...-..+. ..+ +++.|..++++-.+.        ...|+   
T Consensus         4 ~~~~~~-~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    4 WKQGDL-DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             hhhCCH-HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            456788 78888888887644 3344433333332211111222 456 888888877765433        13333   


Q ss_pred             --HHHHHHHHHHHHhcCcHH---HHHHHHHHHHHcC-CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcC
Q 010739          191 --FSMIEKVISLYWEMEKKE---RAVLFVKAVLSRG-IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESG  264 (502)
Q Consensus       191 --~~~y~~li~~~~~~g~~~---~A~~l~~~m~~~~-~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g  264 (502)
                        ..++..++.+|...+..+   +|.++++.+.... -.|.+...          -+....+.++.+++.+.+.+|... 
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L----------~l~il~~~~~~~~~~~~L~~mi~~-  150 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL----------KLEILLKSFDEEEYEEILMRMIRS-  150 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH----------HHHHHhccCChhHHHHHHHHHHHh-
Confidence              366778888888888755   4555666664332 12221000          111112247799999999999877 


Q ss_pred             CCCCHhHHHHHHHHH---HhccccHHHHHHHHHHHHHcCCCCch
Q 010739          265 LKPEVYSYLIALTAV---VKELNEFGKALRKLKGYVRAGSIAEL  305 (502)
Q Consensus       265 ~~p~~~ty~~li~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~  305 (502)
                      +.-....+..+++.+   ...  ....+...+..+....+.|..
T Consensus       151 ~~~~e~~~~~~l~~i~~l~~~--~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  151 VDHSESNFDSILHHIKQLAEK--SPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             cccccchHHHHHHHHHHHHhh--CcHHHHHHHHHHHHHHhCCCh
Confidence            221334444444444   444  355666667777544444443

It is also involved in sporulation [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=91.63  E-value=0.48  Score=34.36  Aligned_cols=62  Identities=13%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC----CC-CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739          149 ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV----GL-KPG-FSMIEKVISLYWEMEKKERAVLFVKAVL  218 (502)
Q Consensus       149 ~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~  218 (502)
                      .+|+.+-..+.        ..|++++|+..|++..+.    |- .|+ ..+++.+-..|.+.|++++|.+.+++-.
T Consensus         6 ~~~~~la~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYR--------ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHH--------HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35666666666        899999999999987754    21 233 5789999999999999999999998764

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.59  E-value=2.9  Score=41.26  Aligned_cols=57  Identities=11%  Similarity=-0.145  Sum_probs=28.3

Q ss_pred             HHHHhc-CcHHhHHHHHHHHHHcCCCCchH-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          313 IEKYQS-DLLADGSRLSSWAIQEGGSSLYG-VVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       313 i~~~~~-g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      -..|.+ |++++|...|++........... .+|..+-.+|.+.|+.++|+..+++..+
T Consensus        82 G~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         82 GLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333444 55555555555444443222111 2455555566666666666666655554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=90.97  E-value=0.76  Score=33.29  Aligned_cols=26  Identities=31%  Similarity=0.300  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739          412 KTLSWLLRGYIKGGHINDAAETLTKM  437 (502)
Q Consensus       412 ~~~~~li~~~~~~g~~~~A~~l~~~m  437 (502)
                      .+++.+-..|...|++++|++.+++-
T Consensus        47 ~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen   47 NTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445566666666666666666654

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.86  E-value=15  Score=35.03  Aligned_cols=104  Identities=13%  Similarity=0.020  Sum_probs=64.0

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN  390 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~  390 (502)
                      .|..+.. |....|.++..+   -++|  |-.-|...|.+|+..++|++-..+...      +-.++-|-.++.+|.+.|
T Consensus       183 Ti~~li~~~~~k~A~kl~k~---Fkv~--dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  183 TIRKLIEMGQEKQAEKLKKE---FKVP--DKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG  251 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHH---cCCc--HHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence            3444444 777777775422   2233  344777777777777777776665432      123466777777777777


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          391 EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       391 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                      +..+|..+...          .++..-+..|.+.|++.+|.+.--+
T Consensus       252 ~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  252 NKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             CHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence            77777666655          1234456777777777777665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=90.73  E-value=1.2  Score=31.67  Aligned_cols=49  Identities=12%  Similarity=-0.036  Sum_probs=25.8

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      +++++|.++++++.......  ...|...-..+.+.|++++|...|+...+
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDD--PELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             CCHHHHHHHHHHHHHhCccc--chhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            55555555555555443222  22454455555556666666666665553

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=90.58  E-value=4.5  Score=39.93  Aligned_cols=66  Identities=15%  Similarity=-0.042  Sum_probs=55.9

Q ss_pred             CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 010739          338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVM  405 (502)
Q Consensus       338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~  405 (502)
                      +.+...|+.+-.+|.+.|++++|+..|++-.+  +.|+.    .+|..+-.+|...|+.++|.+.++.....
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            44567899999999999999999999999775  46764    46899999999999999999999776654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.35  E-value=5.9  Score=39.75  Aligned_cols=136  Identities=12%  Similarity=0.002  Sum_probs=94.0

Q ss_pred             ccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC
Q 010739          110 RLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP  189 (502)
Q Consensus       110 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p  189 (502)
                      .++++..+.++..+-+.|.. +.|+++-..-..+       |    ..+.        +.|+++.|.+..      .-..
T Consensus       292 ~i~~~~~~~i~~fL~~~G~~-e~AL~~~~D~~~r-------F----eLAl--------~lg~L~~A~~~a------~~~~  345 (443)
T PF04053_consen  292 NIPKDQGQSIARFLEKKGYP-ELALQFVTDPDHR-------F----ELAL--------QLGNLDIALEIA------KELD  345 (443)
T ss_dssp             G--HHHHHHHHHHHHHTT-H-HHHHHHSS-HHHH-------H----HHHH--------HCT-HHHHHHHC------CCCS
T ss_pred             cCChhHHHHHHHHHHHCCCH-HHHHhhcCChHHH-------h----HHHH--------hcCCHHHHHHHH------HhcC
Confidence            34456689999999999999 8999886443221       2    3233        679999999953      3334


Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV  269 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~  269 (502)
                      +...|..|-+...+.|+++-|++.|.+..+.+                 -+++-+...|+.+...++-+.-...|-    
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~-----------------~L~lLy~~~g~~~~L~kl~~~a~~~~~----  404 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAKDFS-----------------GLLLLYSSTGDREKLSKLAKIAEERGD----  404 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH-----------------HHHHHHHHCT-HHHHHHHHHHHHHTT-----
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc-----------------ccHHHHHHhCCHHHHHHHHHHHHHccC----
Confidence            78899999999999999999999998775433                 267777778998887777776665533    


Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKG  295 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~  295 (502)
                        +|....++.-. |+.++..+++.+
T Consensus       405 --~n~af~~~~~l-gd~~~cv~lL~~  427 (443)
T PF04053_consen  405 --INIAFQAALLL-GDVEECVDLLIE  427 (443)
T ss_dssp             --HHHHHHHHHHH-T-HHHHHHHHHH
T ss_pred             --HHHHHHHHHHc-CCHHHHHHHHHH
Confidence              56667777777 688888765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=90.23  E-value=5.3  Score=32.94  Aligned_cols=94  Identities=10%  Similarity=0.077  Sum_probs=65.7

Q ss_pred             HHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCCC-HHHHHHHHHH
Q 010739          365 WEMKLVGKEADGD--LYDIVLAICASQNEGSAVSRLLSRIEVMNS-----LCKKKTLSWLLRGYIKGGH-INDAAETLTK  436 (502)
Q Consensus       365 ~~m~~~g~~p~~~--t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-----~p~~~~~~~li~~~~~~g~-~~~A~~l~~~  436 (502)
                      .-|++.+..++..  ..|+++...+..++......+++.+.....     ..+..+|.+++.+..+..- ---+..+|.-
T Consensus        26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~  105 (145)
T PF13762_consen   26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF  105 (145)
T ss_pred             HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence            3345555655553  357777777777777777777766632221     3356678888888876665 3456778888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHc
Q 010739          437 MLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       437 m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      |++.+.+++..-|..++.+|.+
T Consensus       106 Lk~~~~~~t~~dy~~li~~~l~  127 (145)
T PF13762_consen  106 LKKNDIEFTPSDYSCLIKAALR  127 (145)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHc
Confidence            8888888899999999999876

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.00  E-value=7  Score=32.78  Aligned_cols=118  Identities=14%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             HHHHHHHHHH---HhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739          192 SMIEKVISLY---WEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE  268 (502)
Q Consensus       192 ~~y~~li~~~---~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~  268 (502)
                      .+.+.||...   .+.++.++++.+++.|...  .|.......       +-.|-++..|+|.+|.++|+++...+  |.
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~-------~~~~l~i~r~~w~dA~rlLr~l~~~~--~~   76 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDL-------FDGWLHIVRGDWDDALRLLRELEERA--PG   76 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHH-------HHHHHHHHhCCHHHHHHHHHHHhccC--CC
Confidence            3445555444   5678999999999998654  354433333       35677777899999999999987652  33


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHH-HHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKL-KGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~-~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      ..--..|+..|...  .-+..++.+ .+....+-.|+..    .|+..+.. .+...|..
T Consensus        77 ~p~~kALlA~CL~~--~~D~~Wr~~A~evle~~~d~~a~----~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   77 FPYAKALLALCLYA--LGDPSWRRYADEVLESGADPDAR----ALVRALLARADLEPAHE  130 (160)
T ss_pred             ChHHHHHHHHHHHH--cCChHHHHHHHHHHhcCCChHHH----HHHHHHHHhccccchhh
Confidence            33333444444444  223333333 3345555555555    46666555 44444443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.79  E-value=1.4  Score=40.87  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVG---KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL  418 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li  418 (502)
                      .+-..++..--...+++.+...+-+++...   ..|+... .+.+..|-+ -+.+.+..++..=..+|+-||..+++.+|
T Consensus        65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~l~  142 (418)
T KOG4570|consen   65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCLLM  142 (418)
T ss_pred             eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHHHH
Confidence            444555555555677777777777766431   2222211 122222222 34556666666667777777777777777


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCC
Q 010739          419 RGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       419 ~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      +.+.+.+++.+|..+...|....
T Consensus       143 D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  143 DSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHH
Confidence            77777777777777766665544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.52  E-value=7.4  Score=33.58  Aligned_cols=99  Identities=11%  Similarity=0.015  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc---CCCCC
Q 010739          192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES---GLKPE  268 (502)
Q Consensus       192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~---g~~p~  268 (502)
                      ..+..+.+.|++.|+.+.|.+.|.++.+....+....= .     .-.++...+..|++..+.....+....   |-.++
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id-~-----~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~  110 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKID-M-----CLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWE  110 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHH-H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHH
Confidence            57889999999999999999999999877644432000 0     000223333358888888877766654   22222


Q ss_pred             HhHHHHHHHHHHhcc-ccHHHHHHHHHHH
Q 010739          269 VYSYLIALTAVVKEL-NEFGKALRKLKGY  296 (502)
Q Consensus       269 ~~ty~~li~~~~~~~-~~~~~a~~~~~~m  296 (502)
                      ...--.+..|+...+ +++.+|-+.|-+.
T Consensus       111 ~~nrlk~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  111 RRNRLKVYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence            222223333433333 5677776655443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.34  E-value=9.4  Score=35.63  Aligned_cols=136  Identities=10%  Similarity=0.010  Sum_probs=86.4

Q ss_pred             cCCCCCHhHHHHHHHHHHhccccHHHHHHHHH-HHHH----------cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHH
Q 010739          263 SGLKPEVYSYLIALTAVVKELNEFGKALRKLK-GYVR----------AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSW  330 (502)
Q Consensus       263 ~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~-~m~~----------~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~  330 (502)
                      ..+.|...-| .+-++|... .+++. .+.++ .+..          .|....+.+.. .++..-.. .+++++...+-+
T Consensus        14 ~~l~p~~rr~-~LsS~fs~e-~~w~~-r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd-~~V~v~~~~~~idd~~~~LyK   89 (418)
T KOG4570|consen   14 PQLSPAGRRY-LLSSAFSDE-HKWEA-REKEHYKLADLGSLMDKKFERGLPVSSLTVD-RLVDVISSREEIDDAEYYLYK   89 (418)
T ss_pred             hcCCchhcch-hhHHHhhhh-hhhhH-HHHHHHHHhcccccchhhhhcCCCcceeehh-hhhhccccccchhHHHHHHHH
Confidence            3556655443 244555555 44543 33343 3322          23333444443 45666665 888898887765


Q ss_pred             HHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          331 AIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       331 m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      ++...    .+....++|-    -++-.-++++++.++..=.+-|+-||..|++.+|+.+.+.+++.+|.++.-.|....
T Consensus        90 lRhs~~a~~~~~~~~~~~i----rlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen   90 LRHSPNAWYLRNWTIHTWI----RLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HhcCcchhhhccccHHHHH----HHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            55433    2232323332    334456778999999988899999999999999999999999999988886665443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.80  E-value=14  Score=37.00  Aligned_cols=71  Identities=14%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             HHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739          278 AVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM  350 (502)
Q Consensus       278 ~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  350 (502)
                      ++-+. |+.++|.+.+.+|.+ ....-+..+.. .|+..+.. +...++..++.+-.+...|..-..+|+..+--
T Consensus       268 Carkl-Gr~~EAIk~~rdLlke~p~~~~l~Ire-nLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  268 CARKL-GRLREAIKMFRDLLKEFPNLDNLNIRE-NLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             HHHHh-CChHHHHHHHHHHHhhCCccchhhHHH-HHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            33344 677777777777743 32211221222 37777666 77777777777654444555455677765543

The molecular function of this protein is uncertain.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.79  E-value=18  Score=32.69  Aligned_cols=86  Identities=13%  Similarity=0.093  Sum_probs=58.5

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      ..|...-.+|....++ ++|...+.+..+...-+...|+               ..+..+.|.-+.++|.+..  --+..
T Consensus        32 s~yekAAvafRnAk~f-eKakdcLlkA~~~yEnnrslfh---------------AAKayEqaamLake~~kls--Evvdl   93 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKF-EKAKDCLLKASKGYENNRSLFH---------------AAKAYEQAAMLAKELSKLS--EVVDL   93 (308)
T ss_pred             HHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHhcccHHH---------------HHHHHHHHHHHHHHHHHhH--HHHHH
Confidence            3488888888888899 7888876665433222333332               3456677777777776641  12456


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHH
Q 010739          194 IEKVISLYWEMEKKERAVLFVKAV  217 (502)
Q Consensus       194 y~~li~~~~~~g~~~~A~~l~~~m  217 (502)
                      |+....+|..+|..+.|-..++..
T Consensus        94 ~eKAs~lY~E~GspdtAAmaleKA  117 (308)
T KOG1585|consen   94 YEKASELYVECGSPDTAAMALEKA  117 (308)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHH
Confidence            888999999999998887776654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.61  E-value=35  Score=35.92  Aligned_cols=111  Identities=10%  Similarity=-0.000  Sum_probs=85.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010739          371 GKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRV  450 (502)
Q Consensus       371 g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  450 (502)
                      |..-...|.+-.+.-+...|+..+|.++-.+.+    .||...|..=+.+++..+++++-+++-+.++.      ..=|.
T Consensus       679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~  748 (829)
T KOG2280|consen  679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL  748 (829)
T ss_pred             ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence            444455566777778888899888887765543    68999999999999999999998877776542      34566


Q ss_pred             HHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhhh
Q 010739          451 AVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       451 ~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~  499 (502)
                      -.+.+|.+    .|+.++|.+.+....+    .+-.+.+|.++|++-.|
T Consensus       749 PFVe~c~~----~~n~~EA~KYiprv~~----l~ekv~ay~~~~~~~eA  789 (829)
T KOG2280|consen  749 PFVEACLK----QGNKDEAKKYIPRVGG----LQEKVKAYLRVGDVKEA  789 (829)
T ss_pred             hHHHHHHh----cccHHHHhhhhhccCC----hHHHHHHHHHhccHHHH
Confidence            78899988    8999999999754432    22789999999987654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.58  E-value=7.7  Score=32.04  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             HHHHHHHHH---HhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739          193 MIEKVISLY---WEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV  269 (502)
Q Consensus       193 ~y~~li~~~---~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~  269 (502)
                      +.+.||+..   ...++.++++.+++.|.-.  .|+..-...       +-.|-++..|+|++|.++|++..+.+..   
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~-------~dg~l~i~rg~w~eA~rvlr~l~~~~~~---   76 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDM-------FDGWLLIARGNYDEAARILRELLSSAGA---   76 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccch-------hHHHHHHHcCCHHHHHHHHHhhhccCCC---
Confidence            444444443   3488999999999999643  455433333       4667788899999999999999877422   


Q ss_pred             hHHHHHHHHHHhccccHHHHHHHH-HHHHHcCCCCchh
Q 010739          270 YSYLIALTAVVKELNEFGKALRKL-KGYVRAGSIAELD  306 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~-~~m~~~g~~p~~~  306 (502)
                      ..|..-+.++|-.. .-|-.++.+ .+....+-.|+.+
T Consensus        77 ~p~~kAL~A~CL~a-l~Dp~Wr~~A~~~le~~~~~~a~  113 (153)
T TIGR02561        77 PPYGKALLALCLNA-KGDAEWHVHADEVLARDADADAV  113 (153)
T ss_pred             chHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCHhHH
Confidence            24555566666552 223333322 2335555555544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15331 chaperone protein SicA; Provisional

Probab=88.18  E-value=15  Score=31.05  Aligned_cols=87  Identities=11%  Similarity=0.035  Sum_probs=58.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739          350 MYICAGRGLEAERQLWEMKLVGKEADGDLY-DIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  428 (502)
                      .+.+.|++++|..+|.-+...  .|...-| ..|-.+|-..++++.|...+...-..+. -|...+-..-.+|...|+.+
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence            344578888888888877653  2322333 3344555566788888888866655542 34555556777888889999


Q ss_pred             HHHHHHHHHHH
Q 010739          429 DAAETLTKMLD  439 (502)
Q Consensus       429 ~A~~l~~~m~~  439 (502)
                      .|...|+..++
T Consensus       123 ~A~~~f~~a~~  133 (165)
T PRK15331        123 KARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHh
Confidence            99998888776

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.81  E-value=7.3  Score=36.13  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 010739          377 DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRVA  451 (502)
Q Consensus       377 ~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~  451 (502)
                      .++..++..+...|+.+.+...++++.... .-+...|..+|.+|.+.|+...|...|+++..     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345566677777788888888888877766 34788888899999999999999888887765     589999888887


Q ss_pred             HHHHH
Q 010739          452 VLQGL  456 (502)
Q Consensus       452 ll~~~  456 (502)
                      ..+..
T Consensus       233 y~~~~  237 (280)
T COG3629         233 YEEIL  237 (280)
T ss_pred             HHHHh
Confidence            77775

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=87.47  E-value=29  Score=33.63  Aligned_cols=90  Identities=14%  Similarity=-0.038  Sum_probs=58.9

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh
Q 010739          125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG-FSMIEKVISLYWE  203 (502)
Q Consensus       125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~~li~~~~~  203 (502)
                      -.|++ +.|.+-|+.|....    .+--.=++++.-..+    +.|..+.|.++-+.-..  ..|. ...+.+.+...|.
T Consensus       132 ~eG~~-~~Ar~kfeAMl~dP----EtRllGLRgLyleAq----r~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~  200 (531)
T COG3898         132 LEGDY-EDARKKFEAMLDDP----ETRLLGLRGLYLEAQ----RLGAREAARHYAERAAE--KAPQLPWAARATLEARCA  200 (531)
T ss_pred             hcCch-HHHHHHHHHHhcCh----HHHHHhHHHHHHHHH----hcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHh
Confidence            35788 78888888886543    221111222211111    67777777777665443  3333 3678899999999


Q ss_pred             cCcHHHHHHHHHHHHHcC-CCCC
Q 010739          204 MEKKERAVLFVKAVLSRG-IAYA  225 (502)
Q Consensus       204 ~g~~~~A~~l~~~m~~~~-~~p~  225 (502)
                      .|+|+.|+++++.-++.. +.++
T Consensus       201 ~gdWd~AlkLvd~~~~~~vie~~  223 (531)
T COG3898         201 AGDWDGALKLVDAQRAAKVIEKD  223 (531)
T ss_pred             cCChHHHHHHHHHHHHHHhhchh
Confidence            999999999999887655 4444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.18  E-value=1.6  Score=26.18  Aligned_cols=26  Identities=15%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVL  218 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~  218 (502)
                      +|+.|-+.|.+.|++++|.+++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            57889999999999999999999854

>PRK11906 transcriptional regulator; Provisional

Probab=87.05  E-value=27  Score=34.82  Aligned_cols=170  Identities=10%  Similarity=0.003  Sum_probs=103.5

Q ss_pred             hhH--HHHHHHHHHcCCCh----HHHHHHHHHHHHcC--CCC-hHHHHHHHHHHhhh-hhhhhhhhccHhhHHHHHHHHh
Q 010739          114 REL--QLVLVYFSQEGRDS----WCALEVFEWLKKEN--RVD-NETMELMVSIMCSW-VKKYIEEERGVGDVVDLLVDMD  183 (502)
Q Consensus       114 ~~~--~~ll~~~~~~~~~~----~~a~~~~~~m~~~~--~~~-~~~~~~li~~~~~~-~~~~~~~~~~~~~a~~~~~~m~  183 (502)
                      +.|  ...+.+.....+.+    ..|+.+|.+.....  .|+ ...|..+--+.... +...........+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            336  66777766633322    57778898887333  343 34444443322221 1112213566777777777776


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHH-HHH
Q 010739          184 CVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIH-LRE  262 (502)
Q Consensus       184 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~-m~~  262 (502)
                      +.+- -|......+-.+..-.|+++.|..+|++-...+  ||...-       ..+..|....+|+.++|.+.+++ ++-
T Consensus       332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrL  401 (458)
T PRK11906        332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASL-------YYYRALVHFHNEKIEEARICIDKSLQL  401 (458)
T ss_pred             hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            6543 377777777777788888999999999887655  553110       01145555668999999999988 433


Q ss_pred             cCCCCCHhHHHHHHHHHHhccccHHHHHHHHHH
Q 010739          263 SGLKPEVYSYLIALTAVVKELNEFGKALRKLKG  295 (502)
Q Consensus       263 ~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~  295 (502)
                      .-.+-........|+.|+..  ..+++++++-+
T Consensus       402 sP~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  432 (458)
T PRK11906        402 EPRRRKAVVIKECVDMYVPN--PLKNNIKLYYK  432 (458)
T ss_pred             CchhhHHHHHHHHHHHHcCC--chhhhHHHHhh
Confidence            32233334445566677777  48888776644

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=87.03  E-value=16  Score=30.10  Aligned_cols=48  Identities=21%  Similarity=0.257  Sum_probs=21.2

Q ss_pred             hCcHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhccccHHHHHHHHHHH
Q 010739          247 EGKYVDAIKLVIHLRESGLKP---EVYSYLIALTAVVKELNEFGKALRKLKGY  296 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p---~~~ty~~li~~~~~~~~~~~~a~~~~~~m  296 (502)
                      .|++++|.+.|+.+... .+.   ....--.++.++.+. +++++|...+++.
T Consensus        23 ~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~-~~y~~A~a~~~rF   73 (142)
T PF13512_consen   23 KGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQ-GDYEEAIAAYDRF   73 (142)
T ss_pred             hCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHH
Confidence            35555555555555443 111   112233344444444 4455554444444

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=86.53  E-value=19  Score=30.59  Aligned_cols=100  Identities=11%  Similarity=0.018  Sum_probs=53.3

Q ss_pred             HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-
Q 010739          326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV-  404 (502)
Q Consensus       326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~-  404 (502)
                      +..+.+.+.+.++.+ ..|..+|..+.+.|++..    +..+...++-||.......+-....  ....+.++=-.|.. 
T Consensus        15 EYirSl~~~~i~~~~-~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQH-ELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            344444555544433 477777777777776443    3444556666776666655533322  22233333222221 


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739          405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM  437 (502)
Q Consensus       405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  437 (502)
                      .+     ..+..++..+...|++-+|+++.+..
T Consensus        88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   88 LG-----TAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             hh-----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            11     13445666777777777777777653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.35  E-value=18  Score=33.14  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHcC----CCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCC-CchHhHH
Q 010739          271 SYLIALTAVVKELNEFGKALRKLKGYVRAG----SIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGS-SLYGVVH  344 (502)
Q Consensus       271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~-~~~~~~~  344 (502)
                      -|+.-+..+-..  ++..|...|...++..    ..||..-|   |-..+-. |+.++|-.+|..+.+.... +.-....
T Consensus       144 ~Y~~A~~~~ksg--dy~~A~~~F~~fi~~YP~s~~~~nA~yW---LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         144 LYNAALDLYKSG--DYAEAEQAFQAFIKKYPNSTYTPNAYYW---LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             HHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCcccchhHHH---HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            566666655443  5777776666664432    22233221   4444333 6666666666555554311 1111244


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          345 ERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       345 ~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      --+-....+.|+.++|...|++..+
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4444445555555555555555543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.26  E-value=20  Score=30.55  Aligned_cols=138  Identities=15%  Similarity=0.087  Sum_probs=85.8

Q ss_pred             CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 010739          145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS-MIEKVISLYWEMEKKERAVLFVKAVLSRGIA  223 (502)
Q Consensus       145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~  223 (502)
                      ..+...|..-++ +.        +.+..++|+.-|.++.+.|..--.+ .---+-...+..|+...|..-|++.-...-.
T Consensus        56 s~sgd~flaAL~-lA--------~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~  126 (221)
T COG4649          56 SKSGDAFLAALK-LA--------QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI  126 (221)
T ss_pred             ccchHHHHHHHH-HH--------HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC
Confidence            346678888888 77        8899999999999999988642221 1112233457889999999999998765544


Q ss_pred             CCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 010739          224 YAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR  298 (502)
Q Consensus       224 p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~  298 (502)
                      |-.. ....      ---.|.++.+|.++.+..-.+-+-..|-.--...-..|--+-.+. |++.+|.++|.....
T Consensus       127 P~~~rd~AR------lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka-gd~a~A~~~F~qia~  195 (221)
T COG4649         127 PQIGRDLAR------LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA-GDFAKAKSWFVQIAN  195 (221)
T ss_pred             cchhhHHHH------HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc-cchHHHHHHHHHHHc
Confidence            4421 0000      001334444677877777666655443333333334444455566 677777777777643

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=86.23  E-value=37  Score=33.62  Aligned_cols=139  Identities=16%  Similarity=0.053  Sum_probs=91.7

Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPE------VYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS  318 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~------~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~  318 (502)
                      +.+++.+|.++|.+..+. ..-+      .+.-+-+|+||...  +.+.....+.++ ...|-.+-...+  .-+-.|..
T Consensus        18 kq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~~s~~l~LF--~~L~~Y~~   92 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFGKSAYLPLF--KALVAYKQ   92 (549)
T ss_pred             HHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcCCchHHHHH--HHHHHHHh
Confidence            468999999999988765 2222      34456788999888  588777777777 555533333322  12333666


Q ss_pred             CcHHhHHHHHHHHHHc--C-CCC----------chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHH
Q 010739          319 DLLADGSRLSSWAIQE--G-GSS----------LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK----EADGDLYDI  381 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~--~-~~~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~  381 (502)
                      +....|.+.+..-...  + .++          .|.+-=+...+++...|++.++..++++|...=+    ..+..+||-
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR  172 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence            8899888877544333  2 111          1222236677888899999999999999876543    478889988


Q ss_pred             HHHHHHhc
Q 010739          382 VLAICASQ  389 (502)
Q Consensus       382 li~~~~~~  389 (502)
                      ++-.++++
T Consensus       173 ~vlmlsrS  180 (549)
T PF07079_consen  173 AVLMLSRS  180 (549)
T ss_pred             HHHHHhHH
Confidence            66555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15331 chaperone protein SicA; Provisional

Probab=85.89  E-value=19  Score=30.40  Aligned_cols=89  Identities=13%  Similarity=-0.074  Sum_probs=53.2

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCchhchHHHHHHHHhc
Q 010739          240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAELDGKNLGLIEKYQS  318 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~~li~~~~~  318 (502)
                      ..+++...|++++|..+|.-+...  .|-..-|..=+.+|++.-+.+++|+..+......+ -.|.+..   ..-..|..
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f---~agqC~l~  117 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF---FTGQCQLL  117 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc---hHHHHHHH
Confidence            355666678888888888877664  33334454445555555467888888776553322 2233322   24455666


Q ss_pred             -CcHHhHHHHHHHHHH
Q 010739          319 -DLLADGSRLSSWAIQ  333 (502)
Q Consensus       319 -g~~~~a~~~~~~m~~  333 (502)
                       |+.+.|...|.....
T Consensus       118 l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        118 MRKAAKARQCFELVNE  133 (165)
T ss_pred             hCCHHHHHHHHHHHHh
Confidence             777777777765554

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=85.07  E-value=23  Score=32.87  Aligned_cols=118  Identities=10%  Similarity=-0.009  Sum_probs=69.5

Q ss_pred             CcHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHh-ccccHHHHHHHHHHHH-HcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739          248 GKYVDAIKLVIHLRE-SGLKPEVYSYLIALTAVVK-ELNEFGKALRKLKGYV-RAGSIAELDGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       248 g~~~~a~~~~~~m~~-~g~~p~~~ty~~li~~~~~-~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~~li~~~~~-g~~~~  323 (502)
                      ..+.+|+++|+.... ..+--|..+...+++.... .+.....-.++++-+. ..|-.++..+.. .+|+.+++ +++..
T Consensus       142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~-~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVII-SILEILAESRDWNK  220 (292)
T ss_pred             HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHH-HHHHHHHhcccHHH
Confidence            345677777773322 2355677777777777777 3122222333333332 223333333332 57777777 88888


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE  366 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  366 (502)
                      -.++++.-.....+..|...|..+|......|+..-...+.++
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            8887766555544555666788888888888876665555543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.00  E-value=51  Score=35.31  Aligned_cols=173  Identities=13%  Similarity=0.010  Sum_probs=104.9

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--c-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE--L-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ  317 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~--~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~  317 (502)
                      +.-.++...++-|+.+-+.     ...|..+...+...|+..  | |++++|...+-+-+  |.. ++    ..+|.-|-
T Consensus       341 L~iL~kK~ly~~Ai~LAk~-----~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~l-e~----s~Vi~kfL  408 (933)
T KOG2114|consen  341 LDILFKKNLYKVAINLAKS-----QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFL-EP----SEVIKKFL  408 (933)
T ss_pred             HHHHHHhhhHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccC-Ch----HHHHHHhc
Confidence            3333444555666555432     233455555566555544  2 78999977554432  221 11    14777787


Q ss_pred             c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010739          318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVS  396 (502)
Q Consensus       318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~  396 (502)
                      . .++.+-..+++.+.+.|....|  .-+.|+.+|.+.++.++-.++.+.-. .|..  ..-....+..|-+.+-+++|.
T Consensus       409 daq~IknLt~YLe~L~~~gla~~d--httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~  483 (933)
T KOG2114|consen  409 DAQRIKNLTSYLEALHKKGLANSD--HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE  483 (933)
T ss_pred             CHHHHHHHHHHHHHHHHcccccch--hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence            7 8888888899999999988888  77789999999999998887776544 2221  111344556666666666655


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          397 RLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       397 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                      .+-.....     +.....   -.+-..|++++|++.++.|-
T Consensus       484 ~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  484 LLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcCC
Confidence            44332221     222222   23345678888888887653

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=84.80  E-value=57  Score=34.52  Aligned_cols=161  Identities=9%  Similarity=-0.016  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH---H
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF---S  192 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~  192 (502)
                      ...+|-.|.|.|.. +.|.++.....+.-......|-..+..++..-.... ....-+....-|++..+.....|.   .
T Consensus       114 ~Wa~Iyy~LR~G~~-~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l-~~~~~~~l~~ey~~~~r~~~~~DpyK~A  191 (613)
T PF04097_consen  114 IWALIYYCLRCGDY-DEALEVANENRNQFQKIERSFPTYLKAYASSPDRRL-PPELRDKLKLEYNQRIRNSTDGDPYKRA  191 (613)
T ss_dssp             HHHHHHHHHTTT-H-HHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS----TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred             cHHHHHHHHhcCCH-HHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence            78899999999999 899999966655544445566666676653211111 122334555556666555443344   3


Q ss_pred             HHHHHHHHHHhcCc--H----HHHHHH--HHHHH-HcCCCCC---Cccccc---------------cCCCCchHHHHHHH
Q 010739          193 MIEKVISLYWEMEK--K----ERAVLF--VKAVL-SRGIAYA---EGDGEG---------------QQGGPTGYLAWKMM  245 (502)
Q Consensus       193 ~y~~li~~~~~~g~--~----~~A~~l--~~~m~-~~~~~p~---~~ty~~---------------~~~~~~~~~~~~~~  245 (502)
                      +|..+  +-|...+  .    ...++.  |+-+. ..+...+   ...|+-               ..+.-+.......+
T Consensus       192 vY~il--g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~Ll  269 (613)
T PF04097_consen  192 VYKIL--GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAGSNPLLYFQVLL  269 (613)
T ss_dssp             HHHHH--HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT------HHHHHH
T ss_pred             HHHHH--hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Confidence            45444  2222211  1    112222  11111 1111111   111211               11122223445566


Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE  282 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~  282 (502)
                      ..|+++.|++++.+  ..+...|.+.+.+.+.-+.-.
T Consensus       270 LtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL  304 (613)
T PF04097_consen  270 LTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLL  304 (613)
T ss_dssp             HTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--
T ss_pred             HHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCC
Confidence            68999999998887  334556777777766665544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=84.60  E-value=48  Score=33.47  Aligned_cols=48  Identities=19%  Similarity=0.008  Sum_probs=24.1

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          350 MYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      .+.+.|++..|+..|.++.... +-|...|..--.+|.+.|.+..|..=
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~D  414 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKD  414 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHH
Confidence            3444555555555555555433 22444455555555555555554443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=84.35  E-value=2.6  Score=25.20  Aligned_cols=26  Identities=31%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          413 TLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       413 ~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                      +|+.|-..|.+.|++++|.++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46678888999999999999998854

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=84.04  E-value=20  Score=28.93  Aligned_cols=88  Identities=16%  Similarity=0.025  Sum_probs=58.2

Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH-cCCCCchhchHHHHHHH--Hhc-CcH
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR-AGSIAELDGKNLGLIEK--YQS-DLL  321 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~~li~~--~~~-g~~  321 (502)
                      ..|+.+.|++.|.+-... .+-....||.--.++--. ++.++|++-+++-++ .|-...... ...+-.+  |.. |+.
T Consensus        55 E~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq-~~~e~ALdDLn~AleLag~~trtac-qa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCL-APERASAYNNRAQALRLQ-GDDEEALDDLNKALELAGDQTRTAC-QAFVQRGLLYRLLGND  131 (175)
T ss_pred             hccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHc-CChHHHHHHHHHHHHhcCccchHHH-HHHHHHHHHHHHhCch
Confidence            358999999999887654 334678899988888888 789999877776633 333311111 1122222  666 888


Q ss_pred             HhHHHHHHHHHHcCC
Q 010739          322 ADGSRLSSWAIQEGG  336 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~  336 (502)
                      +.|..-|+...+-|.
T Consensus       132 d~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  132 DAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHhHHHHHHhCC
Confidence            888887776666553

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=83.85  E-value=28  Score=30.13  Aligned_cols=115  Identities=17%  Similarity=0.062  Sum_probs=78.9

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcC---CCCchhchHHHHHHHH
Q 010739          240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAG---SIAELDGKNLGLIEKY  316 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~~li~~~  316 (502)
                      +.......|+..+|...|++-...-+.-|......+-++.... ++...|...++++.+..   -.||...   .+-..|
T Consensus        95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~~tLe~l~e~~pa~r~pd~~L---l~aR~l  170 (251)
T COG4700          95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQQTLEDLMEYNPAFRSPDGHL---LFARTL  170 (251)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHHHHHHHHhhcCCccCCCCchH---HHHHHH
Confidence            4555566799999999999988766777888877888888878 78999999999885443   3344442   455668


Q ss_pred             hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHH
Q 010739          317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAE  361 (502)
Q Consensus       317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  361 (502)
                      .. |+..+|+.-|+........+.-..-|..+   +.+.|+.++|.
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~---La~qgr~~ea~  213 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPGPQARIYYAEM---LAKQGRLREAN  213 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH---HHHhcchhHHH
Confidence            88 89999999888877665433333334433   34455544443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.28  E-value=12  Score=34.70  Aligned_cols=73  Identities=19%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL-----VGKEADGDLYDIVLA  384 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~li~  384 (502)
                      .++..+.. |+.+.+.+.+++......-.  ...|..+|.+|.+.|+...|...|+.+..     .|+.|...+......
T Consensus       158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~--E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~  235 (280)
T COG3629         158 KLAEALIACGRADAVIEHLERLIELDPYD--EPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE  235 (280)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence            56677777 88888888888777765444  35999999999999999999999998765     488888877666665


Q ss_pred             H
Q 010739          385 I  385 (502)
Q Consensus       385 ~  385 (502)
                      .
T Consensus       236 ~  236 (280)
T COG3629         236 I  236 (280)
T ss_pred             H
Confidence            5

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.22  E-value=29  Score=29.94  Aligned_cols=96  Identities=17%  Similarity=0.121  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHH--H
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC-KKKTLSW--L  417 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p-~~~~~~~--l  417 (502)
                      .+..+..-|++.|+.++|++.|.++.+....|..  ..+-.+|..+.-.+++..+...+......-..+ |...-|.  .
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            6777778888888888888888888776554433  345566677777788887777665443322111 1111111  1


Q ss_pred             HHH--HHhCCCHHHHHHHHHHHH
Q 010739          418 LRG--YIKGGHINDAAETLTKML  438 (502)
Q Consensus       418 i~~--~~~~g~~~~A~~l~~~m~  438 (502)
                      ..|  +...+++.+|-+.|-+..
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccC
Confidence            222  234678888888877654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=83.10  E-value=78  Score=34.78  Aligned_cols=180  Identities=9%  Similarity=0.033  Sum_probs=112.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGS  325 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~  325 (502)
                      .+...|+..|=+-.  .+.|+ ...|..|-.-|+.. .+...|.+.|..-  ..++++..+...++.+.|.+ ..++.|.
T Consensus       472 K~~~~al~ali~al--rld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KA--FeLDatdaeaaaa~adtyae~~~we~a~  546 (1238)
T KOG1127|consen  472 KNSALALHALIRAL--RLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKA--FELDATDAEAAAASADTYAEESTWEEAF  546 (1238)
T ss_pred             hhHHHHHHHHHHHH--hcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHH--hcCCchhhhhHHHHHHHhhccccHHHHH
Confidence            33444544443322  23344 25677777777777 5666666555443  34555555544478888999 9999999


Q ss_pred             HHHHHHHHcCCCCchHhHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          326 RLSSWAIQEGGSSLYGVVHERLLA--MYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       326 ~~~~~m~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      .+.-...+..  +.-...+|-.-.  .|.+.++..+|..-|+.-.  .+.| |...|..+-.+|...|++..|.++|...
T Consensus       547 ~I~l~~~qka--~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL--R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  547 EICLRAAQKA--PAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL--RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             HHHHHHhhhc--hHHHHHhhhhhccccccCccchhhHHHHHHHHh--cCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            9853322222  222233443333  3555788888888887665  3444 5667788889999999999999999877


Q ss_pred             HHcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHH
Q 010739          403 EVMNSLCKKKTLSW--LLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       403 ~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ....  |+ .+|..  .-..-|..|+.++|+..+.....
T Consensus       623 s~Lr--P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  623 SLLR--PL-SKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HhcC--cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            6554  32 23333  23335677888888888877653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=83.07  E-value=39  Score=31.49  Aligned_cols=101  Identities=11%  Similarity=-0.002  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      ..|-.|=..|.+.|+. ..|..-|..-.+....++..+..+-.++..     ......-.++..+|+++.+..- -|+.+
T Consensus       157 egW~~Lg~~ym~~~~~-~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~-----~a~~~~ta~a~~ll~~al~~D~-~~ira  229 (287)
T COG4235         157 EGWDLLGRAYMALGRA-SDALLAYRNALRLAGDNPEILLGLAEALYY-----QAGQQMTAKARALLRQALALDP-ANIRA  229 (287)
T ss_pred             hhHHHHHHHHHHhcch-hHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----hcCCcccHHHHHHHHHHHhcCC-ccHHH
Confidence            3399999999999999 799999999988765566666655554442     0034556789999999988543 36777


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          194 IEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       194 y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      -.-|--.+...|++.+|...|+.|.+..
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            7778888999999999999999998765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=82.92  E-value=55  Score=32.92  Aligned_cols=71  Identities=10%  Similarity=0.007  Sum_probs=48.1

Q ss_pred             HHHHhc--CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHH
Q 010739          313 IEKYQS--DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EADGDLYDIVL  383 (502)
Q Consensus       313 i~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li  383 (502)
                      +.+|.+  |+.++|.+.|.+|.+........-....||.++...+.+.++..++.+-.+... +--...|+..+
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            444444  888888888888876653333444777788888888888888888888643222 22345666655

The molecular function of this protein is uncertain.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=82.89  E-value=23  Score=28.57  Aligned_cols=85  Identities=11%  Similarity=-0.002  Sum_probs=48.0

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHH---HHHHhcCChhH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-GKEADGDLYDIVL---AICASQNEGSA  394 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li---~~~~~~~~~~~  394 (502)
                      |+++.|++.|.....--...  ...||.--.++--.|+.++|++=+++..+. |-+ +.....+.+   ..|-..|+.+.
T Consensus        57 g~Ld~AlE~F~qal~l~P~r--aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~dd~  133 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPER--ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGNDDA  133 (175)
T ss_pred             cchHHHHHHHHHHHHhcccc--hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCchHH
Confidence            67777777776555443222  237777777777777777777777666554 222 222222222   24455566666


Q ss_pred             HHHHHHHHHHcC
Q 010739          395 VSRLLSRIEVMN  406 (502)
Q Consensus       395 a~~l~~~m~~~~  406 (502)
                      |..=|+.....|
T Consensus       134 AR~DFe~AA~LG  145 (175)
T KOG4555|consen  134 ARADFEAAAQLG  145 (175)
T ss_pred             HHHhHHHHHHhC
Confidence            666665555554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=81.87  E-value=6  Score=30.22  Aligned_cols=47  Identities=15%  Similarity=0.157  Sum_probs=37.4

Q ss_pred             hHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739          174 DVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR  220 (502)
Q Consensus       174 ~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~  220 (502)
                      +..+-+..+-...+.|+..+..+.+++|-|.+|+..|.++|+..+.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            55566667777889999999999999999999999999999999855

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.68  E-value=32  Score=29.35  Aligned_cols=126  Identities=12%  Similarity=-0.032  Sum_probs=57.2

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL---AICASQNEGSAV  395 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li---~~~~~~~~~~~a  395 (502)
                      +..++|+.-|..+...|.....+..---+-....+.|+...|...|++.-...-.|-..-=..-+   -.+...|.++..
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV  151 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV  151 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence            44444555444444444322221222222223344555555555555555443333222111111   123344555555


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 010739          396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP  444 (502)
Q Consensus       396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  444 (502)
                      ....+-+..-+...-...-..|--+-.+.|++.+|.+.|+.+.+.--.|
T Consensus       152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            5444444333322122222235555567788888888887776644444

>PHA02875 ankyrin repeat protein; Provisional

Probab=81.49  E-value=60  Score=32.30  Aligned_cols=207  Identities=13%  Similarity=-0.002  Sum_probs=104.1

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSM--IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM  245 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~--y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~  245 (502)
                      ..|+.+-+..++    +.|..|+...  ..+.+...++.|+.+-+    +.+.+.|..|+....+.     . ..+..++
T Consensus        11 ~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~-----~-t~L~~A~   76 (413)
T PHA02875         11 LFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDI-----E-SELHDAV   76 (413)
T ss_pred             HhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCc-----c-cHHHHHH
Confidence            677776665555    4577666533  34456666778887644    44456676666432111     0 1466667


Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhch--HHHHHHHHhcC
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPE----VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGK--NLGLIEKYQSD  319 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~~li~~~~~g  319 (502)
                      ..|+.+.+..+++    .|...+    ..-. +.+...+.. +..+    +++.+.+.|..|+....  .+.|..+...|
T Consensus        77 ~~g~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~-~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~  146 (413)
T PHA02875         77 EEGDVKAVEELLD----LGKFADDVFYKDGM-TPLHLATIL-KKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMG  146 (413)
T ss_pred             HCCCHHHHHHHHH----cCCcccccccCCCC-CHHHHHHHh-CCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence            7888877655554    332221    1112 233444445 4443    34455667777654321  12454445447


Q ss_pred             cHHhHHHHHHHHHHcCC--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCChhH
Q 010739          320 LLADGSRLSSWAIQEGG--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLY---DIVLAICASQNEGSA  394 (502)
Q Consensus       320 ~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~~~~~~  394 (502)
                      +.+-+.-++    +.|.  ...|..-+ +.+...+..|..+    +.+.+.+.|..|+...-   .+++...+..|+.+-
T Consensus       147 ~~~~v~~Ll----~~g~~~~~~d~~g~-TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i  217 (413)
T PHA02875        147 DIKGIELLI----DHKACLDIEDCCGC-TPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI  217 (413)
T ss_pred             CHHHHHHHH----hcCCCCCCCCCCCC-CHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence            776555544    3332  11121122 2333444556644    44555667777765432   245554455566554


Q ss_pred             HHHHHHHHHHcCCCCCH
Q 010739          395 VSRLLSRIEVMNSLCKK  411 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~~  411 (502)
                      +    +.+...|..++.
T Consensus       218 v----~~Ll~~gad~n~  230 (413)
T PHA02875        218 V----RLFIKRGADCNI  230 (413)
T ss_pred             H----HHHHHCCcCcch
Confidence            3    344445555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=81.22  E-value=61  Score=32.22  Aligned_cols=344  Identities=12%  Similarity=0.066  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHH-HcC-CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC--CCC---
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLK-KEN-RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV--GLK---  188 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~-~~~-~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~---  188 (502)
                      .+.+|++|-.++-. ..+ ....... ..| .+-...|..++. +         +.+.+++|.+.|..-...  +..   
T Consensus        49 ~grilnAffl~nld-~Me-~~l~~l~~~~~~s~~l~LF~~L~~-Y---------~~k~~~kal~~ls~w~~~~~~~~~~~  116 (549)
T PF07079_consen   49 GGRILNAFFLNNLD-LME-KQLMELRQQFGKSAYLPLFKALVA-Y---------KQKEYRKALQALSVWKEQIKGTESPW  116 (549)
T ss_pred             hhHHHHHHHHhhHH-HHH-HHHHHHHHhcCCchHHHHHHHHHH-H---------HhhhHHHHHHHHHHHHhhhcccccch
Confidence            56777877654433 222 2222332 233 222233333332 2         678888888877665554  322   


Q ss_pred             ---------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC----CCCCCccccccCCCCchHHHHHHHHh--------
Q 010739          189 ---------PGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG----IAYAEGDGEGQQGGPTGYLAWKMMVE--------  247 (502)
Q Consensus       189 ---------p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~~~ty~~~~~~~~~~~~~~~~~~--------  247 (502)
                               +|...=+..++.+.+.|++.++..++++|..+=    ...++.+||.        .+.-+.++        
T Consensus       117 Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~--------~vlmlsrSYfLEl~e~  188 (549)
T PF07079_consen  117 LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR--------AVLMLSRSYFLELKES  188 (549)
T ss_pred             hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH--------HHHHHhHHHHHHHHHh
Confidence                     244455677888889999999999988887554    3478888876        33222221        


Q ss_pred             -------CcHHHHHHHHHHHHHc------CCCCCHhHHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCCCchhchHHHHH
Q 010739          248 -------GKYVDAIKLVIHLRES------GLKPEVYSYLIALTAVVKEL-NEFGKALRKLKGYVRAGSIAELDGKNLGLI  313 (502)
Q Consensus       248 -------g~~~~a~~~~~~m~~~------g~~p~~~ty~~li~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li  313 (502)
                             .-++.++-..++|...      .+.|-..-+..++.-..-.. ....--.++++.....-+.|+-...--.|+
T Consensus       189 ~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~  268 (549)
T PF07079_consen  189 MSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLK  268 (549)
T ss_pred             cccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHH
Confidence                   2344444444555432      35566555555555554442 223333444444455556665442111244


Q ss_pred             HHHhcCcHHhHHHHHHHHHHcCC---CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHH
Q 010739          314 EKYQSDLLADGSRLSSWAIQEGG---SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYD-------IVL  383 (502)
Q Consensus       314 ~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-------~li  383 (502)
                      ..+.+ +.+++..+-+.+.....   ...-+.++..++....+.++..+|-..+.-+.-  +.|+...=.       .+-
T Consensus       269 ~~f~~-~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq  345 (549)
T PF07079_consen  269 QQFMS-DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQ  345 (549)
T ss_pred             HHHhc-ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHH
Confidence            44444 55666665554443331   111234788899999999999999988887763  334332111       111


Q ss_pred             HHHH----hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhCCC-HHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 010739          384 AICA----SQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRG---YIKGGH-INDAAETLTKMLDL---GLYPEYMDRVAV  452 (502)
Q Consensus       384 ~~~~----~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~---~~~~g~-~~~A~~l~~~m~~~---g~~p~~~t~~~l  452 (502)
                      +..|    ..-++..-..+|++....++. ..-....|+.+   +-+.|. -++|+++++..+.-   .++--..++..+
T Consensus       346 ~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv  424 (549)
T PF07079_consen  346 DIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV  424 (549)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            2222    111233445567777776643 22233344443   334555 78899999987752   122222333333


Q ss_pred             HHHHHccccccccHHHHHHHHhhhhhcCCchhH
Q 010739          453 LQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPC  485 (502)
Q Consensus       453 l~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~  485 (502)
                      =.+|...+ ....+...+++-+-..+.| +.|.
T Consensus       425 Kq~Y~qaL-s~~~~~rLlkLe~fi~e~g-l~~i  455 (549)
T PF07079_consen  425 KQAYKQAL-SMHAIPRLLKLEDFITEVG-LTPI  455 (549)
T ss_pred             HHHHHHHH-hhhhHHHHHHHHHHHHhcC-CCcc
Confidence            34442110 1344555555555555666 4443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=81.18  E-value=20  Score=29.66  Aligned_cols=89  Identities=9%  Similarity=0.073  Sum_probs=67.8

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHH
Q 010739          341 GVVHERLLAMYICAGRGLEAERQLWEMKLVG-----KEADGDLYDIVLAICASQNE-GSAVSRLLSRIEVMNSLCKKKTL  414 (502)
Q Consensus       341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~~~-~~~a~~l~~~m~~~~~~p~~~~~  414 (502)
                      ....|+++.-....+.+.-...+++.+.--.     -..+..+|++++.+.+.... --.+..+|..+++.+..++..-|
T Consensus        39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy  118 (145)
T PF13762_consen   39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDY  118 (145)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            3567888888888888888888888874221     12356679999999877666 44678888999998889999999


Q ss_pred             HHHHHHHHhCCCHHH
Q 010739          415 SWLLRGYIKGGHIND  429 (502)
Q Consensus       415 ~~li~~~~~~g~~~~  429 (502)
                      ..||.++.+....+.
T Consensus       119 ~~li~~~l~g~~~~~  133 (145)
T PF13762_consen  119 SCLIKAALRGYFHDS  133 (145)
T ss_pred             HHHHHHHHcCCCCcc
Confidence            999999887644433

>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []

Probab=80.89  E-value=53  Score=31.30  Aligned_cols=155  Identities=11%  Similarity=0.059  Sum_probs=94.2

Q ss_pred             CcHHhHHHHHHHHHHcCCC---CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010739          319 DLLADGSRLSSWAIQEGGS---SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAV  395 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a  395 (502)
                      +..++|.+.|+.....+.+   ..+.-....++....+.|..++-..+++....   .++...-..++.+.+...+.+..
T Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~  220 (324)
T PF11838_consen  144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELL  220 (324)
T ss_dssp             HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHH
T ss_pred             hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHH
Confidence            5688899999888876433   33334666777777788886666666665553   34677788899999999999998


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHccccccccHHHHH
Q 010739          396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI--NDAAETLTKM---LDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYL  470 (502)
Q Consensus       396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~l~~~m---~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~  470 (502)
                      .++++.....+..++... ..++.++...+..  +.+++.+.+=   ....+.++......++.++.........+++..
T Consensus       221 ~~~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~  299 (324)
T PF11838_consen  221 KRLLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELE  299 (324)
T ss_dssp             HHHHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred             HHHHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence            889988877543445554 4455566534444  7777766642   222344444466677776644333356677777


Q ss_pred             HHHhhhh
Q 010739          471 NLCKRLS  477 (502)
Q Consensus       471 ~~~~~m~  477 (502)
                      ++++...
T Consensus       300 ~f~~~~~  306 (324)
T PF11838_consen  300 EFFEDKP  306 (324)
T ss_dssp             HHHHHHC
T ss_pred             HHHhhCc
Confidence            7775443

The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.58  E-value=4.7  Score=24.58  Aligned_cols=29  Identities=17%  Similarity=0.279  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLS  219 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~  219 (502)
                      ..+++.|-..|...|++++|..++++..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            46889999999999999999999998764

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=80.54  E-value=6.8  Score=29.59  Aligned_cols=50  Identities=16%  Similarity=0.106  Sum_probs=42.5

Q ss_pred             cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739          171 GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR  220 (502)
Q Consensus       171 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~  220 (502)
                      +.=++.+-++.+....+.|+....++.+++|-|.+|+..|.++|+..+.+
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K   71 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK   71 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44456666677777889999999999999999999999999999988744

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=80.13  E-value=13  Score=28.41  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      +..+-++.+....+.|+.....+.+.+|-+..++..|.++++.++..- .+....|.++++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence            334444444455566666666666666666666666666666665432 222335555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	502
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 8e-08
 Identities = 64/561 (11%), Positives = 151/561 (26%), Gaps = 160/561 (28%)

Query: 49  PSFIAT-KVSKIREF--RFLKSVELDQFVTSDDEDEMS---------------EEFFEAI 90
            +F+       +++     L   E+D  + S D    +               ++F E +
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86

Query: 91  ---------EELERMTREPSDILEE--------MND------------------RLSARE 115
                      ++   R+PS +            ND                  R +  E
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146

Query: 116 LQ---LVLVY----FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVK--KYI 166
           L+    VL+         G+ +W AL+V    K + ++D +           W+      
Sbjct: 147 LRPAKNVLIDGVLGS---GK-TWVALDVCLSYKVQCKMDFKIF---------WLNLKNCN 193

Query: 167 EEERGVGDVVDLLVDMDCVGLKPGFSM---------IEKVISLYWEMEKKERAVL----- 212
             E  +  +  LL  +D                   I+  +    + +  E  +L     
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253

Query: 213 ----FVKA--------VLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHL 260
                  A        + +R     +          +       +   +    +   +  
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 261 RESGLKPEVYS---YLIAL-TAVVKE----LNEFGKALRKLKGYVRAGSIAELDGKNLGL 312
           R   L  EV +     +++    +++     + +          +   S+  L+      
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-- 371

Query: 313 IEKYQSDL--LADGSRLSS------WAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQL 364
             K    L      + + +      W           +  + ++ +       L  E+Q 
Sbjct: 372 -RKMFDRLSVFPPSAHIPTILLSLIWF--------DVIKSDVMVVVNKLHKYSL-VEKQP 421

Query: 365 WEMKLVGKEADGDLYDIVLAICASQNEGSAV-SRLLSRIEVMNSLCKKKTLSWLLRGYIK 423
            E  +        +  I L +        A+   ++    +  +      +   L  Y  
Sbjct: 422 KESTIS-------IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 424 ---GGHINDAAETLTKMLDLGLYPE-YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT 479
              G H+ +      + +   L+   ++D     + L ++I+               S  
Sbjct: 475 SHIGHHLKNI--EHPERMT--LFRMVFLD----FRFLEQKIRHDS-----TAWNASGSIL 521

Query: 480 SLIGPCLVYLYIKKYKLWIIK 500
           + +        +K YK +I  
Sbjct: 522 NTLQQ------LKFYKPYICD 536

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	502
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.97
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.9
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.87
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.86
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.8
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.78
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.77
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.74
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.68
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.67
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.65
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.65
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.62
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.61
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.6
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.58
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.55
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.54
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.54
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.54
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.54
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.53
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.52
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.39
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.39
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.35
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.32
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.3
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.26
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.24
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.24
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.22
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.2
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.15
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.13
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.13
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.12
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.11
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.1
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.03
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.98
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.96
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.92
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.9
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.89
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.84
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.81
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.8
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.79
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.79
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.76
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.73
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.71
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.66
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.66
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.64
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.62
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.54
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.51
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.45
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.43
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.43
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.37
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.36
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.29
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.12
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.08
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.08
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.02
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.99
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.98
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.98
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.97
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.96
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.96
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.92
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.91
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.91
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.88
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.85
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.84
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.84
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.81
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.8
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.79
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.73
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.7
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.69
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.63
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.57
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.55
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.55
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.53
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.53
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.51
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.5
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.49
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.49
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.48
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.46
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.44
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.43
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.43
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.4
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.39
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.39
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.37
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.36
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.36
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.36
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.36
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.33
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.32
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.31
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.28
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.27
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.24
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.23
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.2
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.14
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.04
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.01
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.0
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.9
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.84
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.83
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.72
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.62
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.6
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.58
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.49
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.36
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.26
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.24
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.1
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.01
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.93
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	95.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	95.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.59
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.35
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.33
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.25
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.04
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.93
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.72
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.47
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.47
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.43
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	94.36
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	93.84
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.63
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	93.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	93.42
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	93.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.28
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.16
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.78
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	92.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	92.38
1pc2_A	152	Mitochondria fission protein; unknown function; NM	91.25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	90.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	90.6
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	90.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	90.15
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.13
1pc2_A	152	Mitochondria fission protein; unknown function; NM	88.91
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.63
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	88.02
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	87.72
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	87.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	86.65
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.18
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	84.74
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	83.56
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	83.44
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	83.17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	83.03
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	82.94
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	82.76
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	82.0
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	81.58

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=6.9e-33  Score=279.99  Aligned_cols=207  Identities=7%  Similarity=0.040  Sum_probs=135.7

Q ss_pred             ccHhhHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh-
Q 010739          170 RGVGDVVDLLVDMDCVGLKPGF-SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE-  247 (502)
Q Consensus       170 ~~~~~a~~~~~~m~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~-  247 (502)
                      +....+..+.+++.+.+..+.. ..++.+|++|+|.|++++|.++|++|.+.|+.||..|||+        ++..+... 
T Consensus         4 ~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~--------Li~~c~~~~   75 (501)
T 4g26_A            4 HMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNV--------LLYVCSLAE   75 (501)
T ss_dssp             --------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHH--------HHHHHTTCC
T ss_pred             cccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHH--------HHHHHHhCC
Confidence            3345566777788888875544 4689999999999999999999999999999999999999        88877764 


Q ss_pred             --------CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739          248 --------GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-  318 (502)
Q Consensus       248 --------g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-  318 (502)
                              +.+++|.++|++|...|+.||..|||++|++|++. |++++|.++|++|.+.|+.||..||| .||.+|++ 
T Consensus        76 ~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd~~tyn-~lI~~~~~~  153 (501)
T 4g26_A           76 AATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAK-DDPEMAFDMVKQMKAFGIQPRLRSYG-PALFGFCRK  153 (501)
T ss_dssp             CCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTCCCCHHHHH-HHHHHHHHT
T ss_pred             chhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccceeh-HHHHHHHHC
Confidence                    45899999999999999999999999999999999 89999999999999999988777554 34444444 


Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICA  387 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~  387 (502)
                      |++++|.++|++|...|..+ |..||++||.+|++.|++++|+++|++|++.|+.|+..||++++..|+
T Consensus       154 g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          154 GDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             TCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            44444444444444444333 234444444444444444444444444444444444444444444444

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.4e-32  Score=277.72  Aligned_cols=205  Identities=13%  Similarity=0.036  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-Cc--------
Q 010739          251 VDAIKLVIHLRESGLKPEV-YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DL--------  320 (502)
Q Consensus       251 ~~a~~~~~~m~~~g~~p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~--------  320 (502)
                      ..+..+.+++++.+..+.. ..++.+|++|++. |++++|+++|++|.+.|+.||.+||| +||.+|++ +.        
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~-G~~~~A~~lf~~M~~~Gv~pd~~tyn-~Li~~c~~~~~~~~~~~~~   84 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKK-GDVLEALRLYDEARRNGVQLSQYHYN-VLLYVCSLAEAATESSPNP   84 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTCCCCHHHHH-HHHHHHTTCCCCSSSSCCH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHhHHH-HHHHHHHhCCchhhhhhcc
Confidence            3456677788888776654 5689999999999 89999999999999999999999999 79999986 54        


Q ss_pred             -HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739          321 -LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL  399 (502)
Q Consensus       321 -~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~  399 (502)
                       +++|.++|++|...|..+ |.+|||+||.+|++.|++++|+++|++|.+.|+.||..|||++|.+|++.|++++|.++|
T Consensus        85 ~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence             789999999999999776 679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          400 SRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       400 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      ++|...|+.||..||++||.+|++.|++++|.++|++|++.|+.|+..||+.++..|+.
T Consensus       164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999964

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.97  E-value=5.6e-28  Score=252.05  Aligned_cols=380  Identities=12%  Similarity=-0.004  Sum_probs=288.9

Q ss_pred             HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      +++|+.+|+++. ..|           .+..+..+...|.+.|++ +.|..+|+.+... .++..+++.++.+++     
T Consensus       100 ~~~A~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~-~~~~~~~~~l~~~~~-----  161 (597)
T 2xpi_A          100 YKCAAFVGEKVLDITG-----------NPNDAFWLAQVYCCTGDY-ARAKCLLTKEDLY-NRSSACRYLAAFCLV-----  161 (597)
T ss_dssp             HHHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHTTCH-HHHHHHHHHTCGG-GTCHHHHHHHHHHHH-----
T ss_pred             chHHHHHHHHHHhhCC-----------CchHHHHHHHHHHHcCcH-HHHHHHHHHHhcc-ccchhHHHHHHHHHH-----
Confidence            778888888765 112           234478899999999999 8999999988644 368899999999999     


Q ss_pred             hhhhhccHhhHHHHHHHH-hhC--------------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCcc-
Q 010739          165 YIEEERGVGDVVDLLVDM-DCV--------------GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGD-  228 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m-~~~--------------g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-  228 (502)
                         +.|++++|..+|+++ ...              |.+++..+|+.++.+|.+.|++++|.++|++|.+.+  |+..+ 
T Consensus       162 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~  236 (597)
T 2xpi_A          162 ---KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEA  236 (597)
T ss_dssp             ---HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred             ---HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHH
Confidence               999999999999953 322              345678999999999999999999999999998765  32111 


Q ss_pred             ---------------------------------------------ccc-----------cC--CCCchH-----HHHHHH
Q 010739          229 ---------------------------------------------GEG-----------QQ--GGPTGY-----LAWKMM  245 (502)
Q Consensus       229 ---------------------------------------------y~~-----------~~--~~~~~~-----~~~~~~  245 (502)
                                                                   |..           +.  ..+.+.     +...+.
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  316 (597)
T 2xpi_A          237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF  316 (597)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence                                                         000           00  001111     333344


Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhH
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADG  324 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a  324 (502)
                      ..|++++|+++|++|...+ +.+..+|+.++.++.+. |+.++|.++++++.+.. ..+..+++ .+..+|.+ |++++|
T Consensus       317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~~~A  392 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRH-PEKAVTWL-AVGIYYLCVNKISEA  392 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHH-HHHHHHHHTTCHHHH
T ss_pred             HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHH-HHHHHHHHhccHHHH
Confidence            4567777777777766553 22556666777777776 56777777776665332 23455555 58888888 999999


Q ss_pred             HHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          325 SRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       325 ~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      .++|+++.....  .+..+|+.++.+|++.|++++|.++|++|.+.+ ..+..+|+.+..+|.+.|++++|.++|+.+..
T Consensus       393 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  469 (597)
T 2xpi_A          393 RRYFSKSSTMDP--QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA  469 (597)
T ss_dssp             HHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999988877543  345689999999999999999999999988653 34778899999999999999999999998877


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739          405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE--YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      .. ..+..+|+.++..|.+.|++++|.++|++|.+.    +..|+  ..+|..+..+|.+    .|++++|.+.++++.+
T Consensus       470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  544 (597)
T 2xpi_A          470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LKMYDAAIDALNQGLL  544 (597)
T ss_dssp             HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            65 347888999999999999999999999999876    77888  7899999999987    7999999999988754


Q ss_pred             cC----CchhHHHHHHHhhcchhhhh
Q 010739          479 TS----LIGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       479 ~~----~~~~~li~~y~~~g~~~~~~  500 (502)
                      ..    ..+..+...|.+.|+.+.+.
T Consensus       545 ~~p~~~~~~~~l~~~~~~~g~~~~A~  570 (597)
T 2xpi_A          545 LSTNDANVHTAIALVYLHKKIPGLAI  570 (597)
T ss_dssp             HSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            32    25567888999999887764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.7e-26  Score=238.27  Aligned_cols=342  Identities=11%  Similarity=-0.046  Sum_probs=287.5

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHh-------------------------------hhh
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMC-------------------------------SWV  162 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~-------------------------------~~~  162 (502)
                      ..|+.++.+|.+.|++ ++|+++|++|.+.+..+...+..+...+.                               ...
T Consensus       201 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  279 (597)
T 2xpi_A          201 SMCYLRGQVYTNLSNF-DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL  279 (597)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence            3499999999999999 89999999999887335555544422110                               001


Q ss_pred             hhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHH
Q 010739          163 KKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAW  242 (502)
Q Consensus       163 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~  242 (502)
                      .... +.|++++|..+|++|.+.  +++..+|+.++.+|.+.|++++|.++|++|.+.+ ..+..+++.        ++.
T Consensus       280 ~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~--------l~~  347 (597)
T 2xpi_A          280 NKTS-HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPL--------HLA  347 (597)
T ss_dssp             CTTT-THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHH--------HHH
T ss_pred             HHHc-CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHH--------HHH
Confidence            1111 689999999999999876  5899999999999999999999999999999776 225555655        888


Q ss_pred             HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739          243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL  321 (502)
Q Consensus       243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~  321 (502)
                      .+...|++++|.++|++|... .+.+..+|+.+..+|.+. |++++|.++|+++.+.. ..+..+|+ .++..|.+ |++
T Consensus       348 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~  423 (597)
T 2xpi_A          348 SLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCV-NKISEARRYFSKSSTMD-PQFGPAWI-GFAHSFAIEGEH  423 (597)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCH
Confidence            888899999999999999865 455788999999999999 89999999999996542 22455666 69999999 999


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      ++|.++|+++.......  ..+|+.+..+|.+.|++++|.++|++|.+.. ..+..+|+.+...+.+.|++++|.++++.
T Consensus       424 ~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  500 (597)
T 2xpi_A          424 DQAISAYTTAARLFQGT--HLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQN  500 (597)
T ss_dssp             HHHHHHHHHHHHTTTTC--SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999998776444  4599999999999999999999999998753 34788999999999999999999999998


Q ss_pred             HHHc----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhh
Q 010739          402 IEVM----NSLCK--KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKR  475 (502)
Q Consensus       402 m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~  475 (502)
                      +...    +..|+  ..+|..+..+|.+.|++++|.++|+++.+.+ ..+..+|..+...|..    .|+.++|.+.+++
T Consensus       501 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~  575 (597)
T 2xpi_A          501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH----KKIPGLAITHLHE  575 (597)
T ss_dssp             HHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH----TTCHHHHHHHHHH
T ss_pred             HHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence            8776    66787  7899999999999999999999999998876 3478999999999988    8999999999999


Q ss_pred             hhhcC
Q 010739          476 LSDTS  480 (502)
Q Consensus       476 m~~~~  480 (502)
                      +.+..
T Consensus       576 ~l~~~  580 (597)
T 2xpi_A          576 SLAIS  580 (597)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            86644

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.90  E-value=1.2e-19  Score=178.53  Aligned_cols=365  Identities=13%  Similarity=0.013  Sum_probs=291.4

Q ss_pred             HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhh
Q 010739           85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVK  163 (502)
Q Consensus        85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~  163 (502)
                      .+++|++.+..+. ..|+          .+..+..+-..+.+.|+. +.|..+++...+....+..+|..+...++    
T Consensus        14 ~~~~A~~~~~~~~~~~p~----------~~~~~~~l~~~~~~~~~~-~~a~~~~~~a~~~~p~~~~~~~~lg~~~~----   78 (388)
T 1w3b_A           14 DFEAAERHCMQLWRQEPD----------NTGVLLLLSSIHFQCRRL-DRSAHFSTLAIKQNPLLAEAYSNLGNVYK----   78 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH----
T ss_pred             CHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCchHHHHHHHHHHH----
Confidence            3888888887765 3333          123366667778888999 89999999998877668889999999888    


Q ss_pred             hhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHH
Q 010739          164 KYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWK  243 (502)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~  243 (502)
                          +.|++++|...|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.+  |+......       .+...
T Consensus        79 ----~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~-------~l~~~  144 (388)
T 1w3b_A           79 ----ERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRS-------DLGNL  144 (388)
T ss_dssp             ----HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHH-------HHHHH
T ss_pred             ----HCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH-------HHHHH
Confidence                9999999999999998752 3356789999999999999999999999998764  55433222       13344


Q ss_pred             HHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739          244 MMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL  321 (502)
Q Consensus       244 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~  321 (502)
                      +...|++++|.+.|+++...  .| +..+|+.+...+.+. |++++|...|+++.+.  .|+.......+-..+.. |++
T Consensus       145 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~  219 (388)
T 1w3b_A          145 LKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIF  219 (388)
T ss_dssp             HHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCT
T ss_pred             HHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCH
Confidence            44569999999999999876  34 468899999999999 8999999999999664  34433322256677888 999


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      ++|...|++......  .+..+|..+...|.+.|++++|...|+++.+.. ..+..+|..+...+.+.|++++|.+.++.
T Consensus       220 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  296 (388)
T 1w3b_A          220 DRAVAAYLRALSLSP--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT  296 (388)
T ss_dssp             THHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999998877643  345699999999999999999999999998753 22467889999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739          402 IEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL  481 (502)
Q Consensus       402 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~  481 (502)
                      +.... ..+..+++.+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+    .|+.++|...++++.+.  
T Consensus       297 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~--  368 (388)
T 1w3b_A          297 ALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRI--  368 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTT--
T ss_pred             HHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh--
Confidence            88765 4578899999999999999999999999998642 3457788888888887    79999999999988653  


Q ss_pred             chhHHHHHHHhhcc
Q 010739          482 IGPCLVYLYIKKYK  495 (502)
Q Consensus       482 ~~~~li~~y~~~g~  495 (502)
                       .|.....|...|.
T Consensus       369 -~p~~~~a~~~lg~  381 (388)
T 1w3b_A          369 -SPTFADAYSNMGN  381 (388)
T ss_dssp             -CTTCHHHHHHHHH
T ss_pred             -CCCCHHHHHhHHH
Confidence             3334444554443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.87  E-value=2.1e-18  Score=169.59  Aligned_cols=345  Identities=11%  Similarity=-0.051  Sum_probs=279.8

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010739          120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVIS  199 (502)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~  199 (502)
                      ...+.+.|++ +.|.+.++.+.+....+...+..+...+.        ..|++++|..+++...+. .+.+..+|..+..
T Consensus         6 a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--------~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~   75 (388)
T 1w3b_A            6 AHREYQAGDF-EAAERHCMQLWRQEPDNTGVLLLLSSIHF--------QCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGN   75 (388)
T ss_dssp             HHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred             HHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhc-CCCchHHHHHHHH
Confidence            3456778999 89999999998877335555555555455        889999999999988775 4568889999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHh-HHHHHHH
Q 010739          200 LYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVY-SYLIALT  277 (502)
Q Consensus       200 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-ty~~li~  277 (502)
                      .|.+.|++++|.+.|+++.+..  |+.. .|..        +...+...|++++|++.|+++...  .|+.. .+..+-.
T Consensus        76 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~  143 (388)
T 1w3b_A           76 VYKERGQLQEAIEHYRHALRLK--PDFIDGYIN--------LAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGN  143 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcC--cchHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence            9999999999999999998754  5532 3444        667777889999999999999875  56654 4555666


Q ss_pred             HHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC
Q 010739          278 AVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG  355 (502)
Q Consensus       278 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  355 (502)
                      .+... |++++|.+.|+++.+.  .|+ ...+. .+...|.+ |++++|.+.|+++.......  ...|..+...+...|
T Consensus       144 ~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~  217 (388)
T 1w3b_A          144 LLKAL-GRLEEAKACYLKAIET--QPNFAVAWS-NLGCVFNAQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLKEAR  217 (388)
T ss_dssp             HHHTT-SCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTT
T ss_pred             HHHHc-cCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcC
Confidence            67777 8999999999999654  344 34454 57778888 99999999999998875443  458999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 010739          356 RGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETL  434 (502)
Q Consensus       356 ~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~  434 (502)
                      ++++|...|++..+.  .| +..++..+...+...|++++|.+.++.+...+ ..+..+|..+...|.+.|++++|.+.|
T Consensus       218 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~  294 (388)
T 1w3b_A          218 IFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             CTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999998764  45 47788889999999999999999999988765 235778999999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC----CchhHHHHHHHhhcchhhhh
Q 010739          435 TKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS----LIGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       435 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~----~~~~~li~~y~~~g~~~~~~  500 (502)
                      +++.+.. +.+..++..+...+..    .|+.++|...++++.+..    .....+...|.+.|+.+.+.
T Consensus       295 ~~al~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  359 (388)
T 1w3b_A          295 NTALRLC-PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHHHhhC-cccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            9998763 4677889888888887    799999999999886532    14556888899999887663

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.86  E-value=5.8e-22  Score=205.92  Aligned_cols=150  Identities=13%  Similarity=-0.013  Sum_probs=128.8

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739          341 GVVHERLLAMYICAGRGLEAERQLWEMKL---VGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWL  417 (502)
Q Consensus       341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~l  417 (502)
                      .+|||+||++||+.|++++|.++|++|.+   .|+.||..|||+||++||+.|++++|.++|++|...|+.||..|||+|
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            47999999999999999999999988874   489999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc------CCchhHHHHHH
Q 010739          418 LRGYIKGGHI-NDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT------SLIGPCLVYLY  490 (502)
Q Consensus       418 i~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~------~~~~~~li~~y  490 (502)
                      |.++|+.|+. ++|.++|++|.+.|+.||..||+.++.++.+    .+-++...++...+...      ....+-|.+.|
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~  282 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY  282 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence            9999999985 7899999999999999999999999988876    34444444443333322      22345688888


Q ss_pred             Hhhc
Q 010739          491 IKKY  494 (502)
Q Consensus       491 ~~~g  494 (502)
                      ++.|
T Consensus       283 s~d~  286 (1134)
T 3spa_A          283 AKDG  286 (1134)
T ss_dssp             CCCS
T ss_pred             ccCC
Confidence            8766

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=2.6e-20  Score=193.65  Aligned_cols=161  Identities=11%  Similarity=-0.006  Sum_probs=134.2

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDC---VGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIA  223 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~  223 (502)
                      -..|||++|+++|        +.|++++|..+|++|.+   .|+.||++|||+||++||+.|++++|.++|++|.+.|+.
T Consensus       126 ~~~TynaLIdglc--------K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~  197 (1134)
T 3spa_A          126 QQQRLLAFFKCCL--------LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT  197 (1134)
T ss_dssp             HHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            3459999999999        99999999999988764   489999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCchHHHHHHHHhCc-HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC
Q 010739          224 YAEGDGEGQQGGPTGYLAWKMMVEGK-YVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSI  302 (502)
Q Consensus       224 p~~~ty~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~  302 (502)
                      ||++|||+        ++.++++.|+ .++|.++|++|.+.|+.||.+||++++.+..+. +    .++.++++ ..++.
T Consensus       198 PDvvTYnt--------LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-~----vL~~Vrkv-~P~f~  263 (1134)
T 3spa_A          198 PDLLSYAA--------ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-T----VLKAVHKV-KPTFS  263 (1134)
T ss_dssp             CCHHHHHH--------HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-H----HHHHHGGG-CCCCC
T ss_pred             CcHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-H----HHHHHHHh-CcccC
Confidence            99999999        9999999997 589999999999999999999999999877776 3    33334444 45666


Q ss_pred             Cc------hhchHHHHHHHHhc-C---------cHHhHHHHHHH
Q 010739          303 AE------LDGKNLGLIEKYQS-D---------LLADGSRLSSW  330 (502)
Q Consensus       303 p~------~~~~~~~li~~~~~-g---------~~~~a~~~~~~  330 (502)
                      |+      ..+.. .|.+.|.+ +         ..++-...|++
T Consensus       264 p~~~~~~~~~t~~-LL~dl~s~d~~~s~pk~~~~~~~L~~~~~~  306 (1134)
T 3spa_A          264 LPPQLPPPVNTSK-LLRDVYAKDGRVSYPKLHLPLKTLQCLFEK  306 (1134)
T ss_dssp             CCCCCCCCCCCCT-TTHHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred             CCCCCcccccchH-HHHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence            54      44444 46677876 5         24555566643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.80  E-value=2.9e-16  Score=157.25  Aligned_cols=312  Identities=12%  Similarity=-0.024  Sum_probs=247.7

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHH
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      ..+..+...+.+.|++ +.|+++|+.+.+....+...|..+..++.        ..|++++|...|+++.+.+ +.+..+
T Consensus        27 ~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~   96 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFL--------AMGKSKAALPDLTKVIQLK-MDFTAA   96 (450)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcC-CCcHHH
Confidence            3488888999999999 89999999999877557889999888888        8999999999999998864 346889


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC----ccccccC----CCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739          194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE----GDGEGQQ----GGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL  265 (502)
Q Consensus       194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~ty~~~~----~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~  265 (502)
                      |..+...|.+.|++++|.+.|+++.+.+  |+.    ..+..-.    ..........+...|++++|++.|+++... .
T Consensus        97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~  173 (450)
T 2y4t_A           97 RLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-C  173 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence            9999999999999999999999998754  332    1111100    000000123355679999999999999876 3


Q ss_pred             CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739          266 KPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH  344 (502)
Q Consensus       266 ~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~  344 (502)
                      +.+..++..+..++.+. |++++|.+.++++.+.. ..+...+. .+...|.. |++++|.+.|+++.......  ...+
T Consensus       174 ~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~  248 (450)
T 2y4t_A          174 VWDAELRELRAECFIKE-GEPRKAISDLKAASKLK-NDNTEAFY-KISTLYYQLGDHELSLSEVRECLKLDQDH--KRCF  248 (450)
T ss_dssp             TTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHH-CSCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred             CCChHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCh--HHHH
Confidence            34678899999999999 89999999999995542 22345554 58888888 99999999999988765433  2355


Q ss_pred             HHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739          345 ERL------------LAMYICAGRGLEAERQLWEMKLVGKEAD-----GDLYDIVLAICASQNEGSAVSRLLSRIEVMNS  407 (502)
Q Consensus       345 ~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~  407 (502)
                      ..+            ...|.+.|++++|..+|+++.+.  .|+     ...|..+...+.+.|++++|.+.++.+.... 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-  325 (450)
T 2y4t_A          249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-  325 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            555            78899999999999999999874  455     4578888899999999999999999887664 


Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 010739          408 LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMD  448 (502)
Q Consensus       408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  448 (502)
                      ..+...|..+..+|...|++++|.+.|++..+  +.|+...
T Consensus       326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~  364 (450)
T 2y4t_A          326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ  364 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence            33688999999999999999999999999987  4565443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.78  E-value=5.4e-16  Score=155.29  Aligned_cols=313  Identities=8%  Similarity=-0.017  Sum_probs=240.4

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 010739          132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAV  211 (502)
Q Consensus       132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~  211 (502)
                      .+...+.........+...+..+...+.        +.|++++|..+|+++.+. .+.+..+|..+..+|.+.|++++|.
T Consensus        10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~--------~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~   80 (450)
T 2y4t_A           10 GVDLGTENLYFQSMADVEKHLELGKKLL--------AAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAAL   80 (450)
T ss_dssp             -------------CHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHH
Confidence            4445555555444346778888888788        899999999999999875 3457899999999999999999999


Q ss_pred             HHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH----hHHHHHHH---------
Q 010739          212 LFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV----YSYLIALT---------  277 (502)
Q Consensus       212 ~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~li~---------  277 (502)
                      ..|+++.+.+  |+ ...+..        +...+...|++++|.+.|+++...  .|+.    ..+..+..         
T Consensus        81 ~~~~~al~~~--p~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~  148 (450)
T 2y4t_A           81 PDLTKVIQLK--MDFTAARLQ--------RGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRS  148 (450)
T ss_dssp             HHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--CCcHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHH
Confidence            9999998875  33 223333        566667789999999999999865  4543    45555543         


Q ss_pred             ---HHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          278 ---AVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       278 ---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                         .+.+. |++++|...++++.+.. ..+...+. .+...|.+ |++++|.+.|+++......  +..+|+.+...|.+
T Consensus       149 ~a~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~  223 (450)
T 2y4t_A          149 QALNAFGS-GDYTAAIAFLDKILEVC-VWDAELRE-LRAECFIKEGEPRKAISDLKAASKLKND--NTEAFYKISTLYYQ  223 (450)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCGGGGHHHHHHHHHHHCS--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence               37777 79999999999996542 12344444 68888988 9999999999998876433  34699999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHH
Q 010739          354 AGRGLEAERQLWEMKLVGKEADGD-LYDIV------------LAICASQNEGSAVSRLLSRIEVMNSLCK-----KKTLS  415 (502)
Q Consensus       354 ~g~~~~A~~l~~~m~~~g~~p~~~-t~~~l------------i~~~~~~~~~~~a~~l~~~m~~~~~~p~-----~~~~~  415 (502)
                      .|++++|...|+++.+.  .|+.. .+..+            ...|...|++++|.+.++.+....  |+     ...|.
T Consensus       224 ~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~  299 (450)
T 2y4t_A          224 LGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKE  299 (450)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHH
Confidence            99999999999999854  45443 34333            688999999999999999887754  44     44778


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      .+...+.+.|++++|.+.++++.+.. +.+...|..+..+|..    .|+.++|...++...+.
T Consensus       300 ~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          300 RICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLI----EEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence            89999999999999999999988753 2367888889999887    79999999999988654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.4e-15  Score=154.75  Aligned_cols=364  Identities=10%  Similarity=-0.034  Sum_probs=271.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +...-..+.+.|++ +.|+..|+.+.+.. ||...|..+..++.        ..|++++|...++++.+.+ +.+..+|.
T Consensus         9 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~-p~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~   77 (514)
T 2gw1_A            9 LKDKGNQFFRNKKY-DDAIKYYNWALELK-EDPVFYSNLSACYV--------SVGDLKKVVEMSTKALELK-PDYSKVLL   77 (514)
T ss_dssp             HHHHHHHHHHTSCH-HHHHHHHHHHHHHC-CCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred             HHHHHHHHHHhccH-HHHHHHHHHHHhcC-ccHHHHHhHHHHHH--------HHhhHHHHHHHHHHHhccC-hHHHHHHH
Confidence            55666778889999 89999999999887 78889998888787        8999999999999998864 34678999


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccc------------------------------------------cC
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEG------------------------------------------QQ  233 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~------------------------------------------~~  233 (502)
                      .+..+|.+.|++++|...|+++.+.+- ++......                                          ..
T Consensus        78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (514)
T 2gw1_A           78 RRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE  156 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence            999999999999999999999877652 11111000                                          00


Q ss_pred             CC------------------------C--chH-H--HHHHHH---hCcHHHHHHHHHHHHH-----cCCC--------CC
Q 010739          234 GG------------------------P--TGY-L--AWKMMV---EGKYVDAIKLVIHLRE-----SGLK--------PE  268 (502)
Q Consensus       234 ~~------------------------~--~~~-~--~~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~  268 (502)
                      ..                        +  ... +  ......   .|++++|+++|+++..     ..-.        .+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (514)
T 2gw1_A          157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL  236 (514)
T ss_dssp             CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred             CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence            00                        0  000 1  111222   6999999999999987     3112        23


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL  347 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  347 (502)
                      ..++..+...+.+. |++++|...+++..+..  |+...+. .+...|.. |++++|.+.++++........  ..|..+
T Consensus       237 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~--~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l  310 (514)
T 2gw1_A          237 AISLEHTGIFKFLK-NDPLGAHEDIKKAIELF--PRVNSYI-YMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHR  310 (514)
T ss_dssp             HHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHC--CCHHHHH-HHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHH
T ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhC--ccHHHHH-HHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHH
Confidence            46777888888889 89999999999986654  3344444 57777888 999999999999887654443  488999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739          348 LAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI  427 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  427 (502)
                      ...|.+.|++++|...|++..+..- .+...+..+...+...|++++|.+.++.+.... ..+...+..+...|.+.|++
T Consensus       311 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  388 (514)
T 2gw1_A          311 GQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDF  388 (514)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCH
Confidence            9999999999999999999887532 256778888889999999999999998887654 23567888899999999999


Q ss_pred             HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhh
Q 010739          428 NDAAETLTKMLDLGL-YPE----YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWI  498 (502)
Q Consensus       428 ~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~  498 (502)
                      ++|...|+++.+..- .|+    ...+..+...+.... ..|+.++|...++...+...    ....+...|.+.|+.+.
T Consensus       389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  467 (514)
T 2gw1_A          389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP-TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE  467 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh-hcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH
Confidence            999999999876431 122    336666666665300 03889999999888754321    33457778888888776


Q ss_pred             hh
Q 010739          499 IK  500 (502)
Q Consensus       499 ~~  500 (502)
                      +.
T Consensus       468 A~  469 (514)
T 2gw1_A          468 AI  469 (514)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.74  E-value=3.3e-15  Score=152.08  Aligned_cols=363  Identities=9%  Similarity=-0.069  Sum_probs=272.9

Q ss_pred             HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhh
Q 010739           85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVK  163 (502)
Q Consensus        85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~  163 (502)
                      .+++|+..|+++. ..|+           +..|..+...+.+.|++ +.|++.|+.+.+....+...|..+..++.    
T Consensus        21 ~~~~A~~~~~~al~~~p~-----------~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~----   84 (514)
T 2gw1_A           21 KYDDAIKYYNWALELKED-----------PVFYSNLSACYVSVGDL-KKVVEMSTKALELKPDYSKVLLRRASANE----   84 (514)
T ss_dssp             CHHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHH----
T ss_pred             cHHHHHHHHHHHHhcCcc-----------HHHHHhHHHHHHHHhhH-HHHHHHHHHHhccChHHHHHHHHHHHHHH----
Confidence            3888888888865 2222           44588889999999999 89999999999887557788888888888    


Q ss_pred             hhhhhhccHhhHHHHHHHHhhCCCC-------------------------------------------------------
Q 010739          164 KYIEEERGVGDVVDLLVDMDCVGLK-------------------------------------------------------  188 (502)
Q Consensus       164 ~~~~~~~~~~~a~~~~~~m~~~g~~-------------------------------------------------------  188 (502)
                          ..|++++|...|+++.+.+-.                                                       
T Consensus        85 ----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (514)
T 2gw1_A           85 ----GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS  160 (514)
T ss_dssp             ----HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred             ----HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence                899999999999988765420                                                       


Q ss_pred             -----------------------CCHHHHHHHHHHHH---hcCcHHHHHHHHHHHHH-----cCCCCCCccccccCCCCc
Q 010739          189 -----------------------PGFSMIEKVISLYW---EMEKKERAVLFVKAVLS-----RGIAYAEGDGEGQQGGPT  237 (502)
Q Consensus       189 -----------------------p~~~~y~~li~~~~---~~g~~~~A~~l~~~m~~-----~~~~p~~~ty~~~~~~~~  237 (502)
                                             .+...+......+.   +.|++++|..+|+++.+     ..-.|+............
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2gw1_A          161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL  240 (514)
T ss_dssp             HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence                                   01223333333333   38999999999999987     432333210000000000


Q ss_pred             hHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh
Q 010739          238 GYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ  317 (502)
Q Consensus       238 ~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~  317 (502)
                      ..+...+...|++++|.+.|++.....  |+..+|..+...+... |++++|.+.+++..+..- .+...+. .+...|.
T Consensus       241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~l~~~~~  315 (514)
T 2gw1_A          241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADR-NDSTEYYNYFDKALKLDS-NNSSVYY-HRGQMNF  315 (514)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCT-TCTHHHH-HHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCc-CCHHHHH-HHHHHHH
Confidence            014445556799999999999998874  4488888899999999 899999999998865432 2334443 5777788


Q ss_pred             c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010739          318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVS  396 (502)
Q Consensus       318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~  396 (502)
                      . |++++|...|++.........  ..|..+...|.+.|++++|...++++.+.. ..+...+..+...+...|++++|.
T Consensus       316 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  392 (514)
T 2gw1_A          316 ILQNYDQAGKDFDKAKELDPENI--FPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL  392 (514)
T ss_dssp             HTTCTTHHHHHHHHHHHTCSSCS--HHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHhChhhH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence            8 999999999999887664443  488999999999999999999999988653 235678888889999999999999


Q ss_pred             HHHHHHHHcCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHH
Q 010739          397 RLLSRIEVMNS-LCK----KKTLSWLLRGYIK---GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEA  468 (502)
Q Consensus       397 ~l~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~  468 (502)
                      +.++.+..... .++    ...+..+...|.+   .|++++|.+.|++..+.. ..+..++..+...+..    .|+.++
T Consensus       393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~----~g~~~~  467 (514)
T 2gw1_A          393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQ----QEDIDE  467 (514)
T ss_dssp             HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH----hcCHHH
Confidence            99987765432 122    3488889999999   999999999999998754 2356677777777776    799999


Q ss_pred             HHHHHhhhhhcC
Q 010739          469 YLNLCKRLSDTS  480 (502)
Q Consensus       469 a~~~~~~m~~~~  480 (502)
                      |...+++..+..
T Consensus       468 A~~~~~~a~~~~  479 (514)
T 2gw1_A          468 AITLFEESADLA  479 (514)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999886654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.68  E-value=3.1e-13  Score=138.35  Aligned_cols=358  Identities=8%  Similarity=-0.042  Sum_probs=249.0

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      |..+-..+.+.|++ +.|++.|+.+.+....+...|..+..++.        ..|++++|...|++..+.+ +.+..++.
T Consensus        28 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~   97 (537)
T 3fp2_A           28 LKNRGNHFFTAKNF-NEAIKYYQYAIELDPNEPVFYSNISACYI--------STGDLEKVIEFTTKALEIK-PDHSKALL   97 (537)
T ss_dssp             HHHHHHHHHHTTCC-C-CHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHhccH-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcC-CchHHHHH
Confidence            66667777888888 78888888888777457778887777777        7888888888888887753 34677888


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccc--cc-------------------------cCCCCchH---------
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDG--EG-------------------------QQGGPTGY---------  239 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty--~~-------------------------~~~~~~~~---------  239 (502)
                      .+...|.+.|++++|.+.|+.+. .  .|+...-  ..                         ....+...         
T Consensus        98 ~la~~~~~~g~~~~A~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (537)
T 3fp2_A           98 RRASANESLGNFTDAMFDLSVLS-L--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF  174 (537)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHh-c--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence            88888888888888888885331 1  1111000  00                         00000000         


Q ss_pred             ---------------------HHHHHHH------------hCcHHHHHHHHHHHHHcCCCCC--------HhHHHHHHHH
Q 010739          240 ---------------------LAWKMMV------------EGKYVDAIKLVIHLRESGLKPE--------VYSYLIALTA  278 (502)
Q Consensus       240 ---------------------~~~~~~~------------~g~~~~a~~~~~~m~~~g~~p~--------~~ty~~li~~  278 (502)
                                           +......            .|++++|+.+|+++...  .|+        ..+|..+-..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~  252 (537)
T 3fp2_A          175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIF  252 (537)
T ss_dssp             CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHH
Confidence                                 0111110            15788999999988764  344        2345666667


Q ss_pred             HHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCCh
Q 010739          279 VVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRG  357 (502)
Q Consensus       279 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  357 (502)
                      +... +++++|...+++..+.  .|+...+. .+...|.. |++++|.+.|++........  ..+|..+...|.+.|++
T Consensus       253 ~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~  326 (537)
T 3fp2_A          253 HFLK-NNLLDAQVLLQESINL--HPTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDY  326 (537)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHH--CCCHHHHH-HHHHHTCCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCH
T ss_pred             HHhc-ccHHHHHHHHHHHHhc--CCCchHHH-HHHHHHHHhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCH
Confidence            7777 7899999999998665  34544444 46666777 99999999999988776443  45899999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739          358 LEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM  437 (502)
Q Consensus       358 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  437 (502)
                      ++|...|++..+.. .-+...+..+...+...|++++|.+.++...... ..+...+..+...|...|++++|.+.|++.
T Consensus       327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            99999999988753 2245678888899999999999999998887765 335678888999999999999999999998


Q ss_pred             HHCC-----CCCCHHHHHHHHHHHHcccccc----------ccHHHHHHHHhhhhhcC----CchhHHHHHHHhhcchhh
Q 010739          438 LDLG-----LYPEYMDRVAVLQGLRKRIQQS----------GNVEAYLNLCKRLSDTS----LIGPCLVYLYIKKYKLWI  498 (502)
Q Consensus       438 ~~~g-----~~p~~~t~~~ll~~~~~~~~~~----------~~~~~a~~~~~~m~~~~----~~~~~li~~y~~~g~~~~  498 (502)
                      .+..     ..-....+...-..+..    .          |+.++|...++...+..    .....+...|.+.|+.+.
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          405 KRLEEVQEKIHVGIGPLIGKATILAR----QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             HHHHHHCSSCSSTTHHHHHHHHHHHH----HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHHHHHHH----HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence            7643     11111112222233333    4          88999999988875432    144567788888888776


Q ss_pred             hh
Q 010739          499 IK  500 (502)
Q Consensus       499 ~~  500 (502)
                      +.
T Consensus       481 A~  482 (537)
T 3fp2_A          481 AI  482 (537)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.67  E-value=1.3e-12  Score=125.97  Aligned_cols=307  Identities=11%  Similarity=-0.031  Sum_probs=227.3

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .+..+-..+.+.|++ +.|++.|+...+....+...+..+...+.        ..|++++|...|++..+.. +-+...|
T Consensus         5 ~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~~~~~~-~~~~~~~   74 (359)
T 3ieg_A            5 KHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFL--------AMGKSKAALPDLTKVIALK-MDFTAAR   74 (359)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-CCcchHH
Confidence            466777788999999 89999999999887557788888888777        8999999999999988753 3367899


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCC---CC-ccccccCCC-----CchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAY---AE-GDGEGQQGG-----PTGYLAWKMMVEGKYVDAIKLVIHLRESGL  265 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~-~ty~~~~~~-----~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~  265 (502)
                      ..+...|.+.|++++|...|++..+..  |   +. ..+.. -+.     ........+...|++++|++.|++.... .
T Consensus        75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~  150 (359)
T 3ieg_A           75 LQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQ-LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-C  150 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHH-HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C
Confidence            999999999999999999999998664  3   11 11111 000     0000023444579999999999998876 2


Q ss_pred             CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739          266 KPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH  344 (502)
Q Consensus       266 ~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~  344 (502)
                      +.+...+..+...+.+. |++++|...+++..+.. ..+...+. .+...|.. |++++|.+.|++.........+  .+
T Consensus       151 ~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~  225 (359)
T 3ieg_A          151 VWDAELRELRAECFIKE-GEPRKAISDLKAASKLK-SDNTEAFY-KISTLYYQLGDHELSLSEVRECLKLDQDHKR--CF  225 (359)
T ss_dssp             TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-SCCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HH
T ss_pred             CCchHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCccchH--HH
Confidence            34567788888888888 78999999888886542 22334443 56677777 9999999999888876544433  33


Q ss_pred             H------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739          345 E------------RLLAMYICAGRGLEAERQLWEMKLVGKEADGD-----LYDIVLAICASQNEGSAVSRLLSRIEVMNS  407 (502)
Q Consensus       345 ~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~li~~~~~~~~~~~a~~l~~~m~~~~~  407 (502)
                      .            .+...+.+.|++++|...+++..+..  |+..     .+..+-..+...|++++|.+.++...... 
T Consensus       226 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-  302 (359)
T 3ieg_A          226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-  302 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence            2            22556788999999999999887653  3322     23345578888899999999998877654 


Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 010739          408 LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE  445 (502)
Q Consensus       408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  445 (502)
                      ..+...+..+...|.+.|++++|.+.|++..+.  .|+
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~  338 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NEN  338 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTT
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence            336778888888999999999999999988765  355

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.65  E-value=2.2e-15  Score=145.80  Aligned_cols=277  Identities=12%  Similarity=0.030  Sum_probs=130.2

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      +.|++++|.++++++.      +..+|..|..++.+.|++++|.+.|...      +|..+|..        +...+...
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~--------V~~~ae~~   74 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYME--------VVQAANTS   74 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHH--------HHHHHHhC
Confidence            7789999999999883      3358999999999999999999999652      56667777        78888889


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      |++++|+++++..++.  .+++.+.+.++.+|.+. |+++++.++++       .|+..+++ .+...|.. |++++|..
T Consensus        75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Kl-g~l~e~e~f~~-------~pn~~a~~-~IGd~~~~~g~yeeA~~  143 (449)
T 1b89_A           75 GNWEELVKYLQMARKK--ARESYVETELIFALAKT-NRLAELEEFIN-------GPNNAHIQ-QVGDRCYDEKMYDAAKL  143 (449)
T ss_dssp             -------------------------------------CHHHHTTTTT-------CC-----------------CTTTHHH
T ss_pred             CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHh-CCHHHHHHHHc-------CCcHHHHH-HHHHHHHHcCCHHHHHH
Confidence            9999999977766653  56688899999999999 89999987774       36777887 68888888 99999999


Q ss_pred             HHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          327 LSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       327 ~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      .|..+          ..|..+..++.+.|++++|.+.+.++      .++.||..++.+|...|+++.|......     
T Consensus       144 ~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----  202 (449)
T 1b89_A          144 LYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----  202 (449)
T ss_dssp             HHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----
T ss_pred             HHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----
Confidence            99864          28999999999999999999999988      3789999999999999999999543332     


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh----h-----
Q 010739          407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL----S-----  477 (502)
Q Consensus       407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m----~-----  477 (502)
                      +..+..-...++..|.+.|++++|..+++..+... +-....|+-|--++++-  +-+++.+.++.|..-    +     
T Consensus       203 L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~k~~~~~  279 (449)
T 1b89_A          203 IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAA  279 (449)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred             HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            22344445569999999999999999999977554 55666777776666531  146677777766543    1     


Q ss_pred             hcCCchhHHHHHHHhhcchhhh
Q 010739          478 DTSLIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       478 ~~~~~~~~li~~y~~~g~~~~~  499 (502)
                      +...+.+.++..|..-|.++.+
T Consensus       280 ~~~~~w~e~~~ly~~~~e~d~A  301 (449)
T 1b89_A          280 EQAHLWAELVFLYDKYEEYDNA  301 (449)
T ss_dssp             HTTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhchHHHH
Confidence            3344777899999998887754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.65  E-value=2.4e-13  Score=139.15  Aligned_cols=353  Identities=12%  Similarity=0.016  Sum_probs=253.6

Q ss_pred             HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      +++|++.|++.. ..|.          .+..|..+...+.+.|++ +.|++.|+...+....+...+..+...+.     
T Consensus        41 ~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~-----  104 (537)
T 3fp2_A           41 FNEAIKYYQYAIELDPN----------EPVFYSNISACYISTGDL-EKVIEFTTKALEIKPDHSKALLRRASANE-----  104 (537)
T ss_dssp             CC-CHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhhCCC----------CcHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHHH-----
Confidence            555666665544 2222          345588889999999999 89999999999887557788888888777     


Q ss_pred             hhhhhccHhhHHHHHHHHhhCCC------------------------------------CCCHH----------------
Q 010739          165 YIEEERGVGDVVDLLVDMDCVGL------------------------------------KPGFS----------------  192 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g~------------------------------------~p~~~----------------  192 (502)
                         ..|++++|...|+.+....-                                    .|+..                
T Consensus       105 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          105 ---SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             ---HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             ---HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence               89999999998864422110                                    11111                


Q ss_pred             --------------HHHHHHHHHHh--------cCcHHHHHHHHHHHHHcCCCCCCc--------cccccCCCCchHHHH
Q 010739          193 --------------MIEKVISLYWE--------MEKKERAVLFVKAVLSRGIAYAEG--------DGEGQQGGPTGYLAW  242 (502)
Q Consensus       193 --------------~y~~li~~~~~--------~g~~~~A~~l~~~m~~~~~~p~~~--------ty~~~~~~~~~~~~~  242 (502)
                                    ....+...+..        .|++++|..+|+++.+..  |+..        .|..        +..
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~--------~g~  251 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY--------TGI  251 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH--------HHH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH--------HHH
Confidence                          11222222211        247889999999887654  3311        1111        233


Q ss_pred             HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739          243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL  321 (502)
Q Consensus       243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~  321 (502)
                      .+...|++++|.+.|++....  .|+..+|..+...+.+. +++++|.+.+++..+..- .+...+. .+...|.. |++
T Consensus       252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~  326 (537)
T 3fp2_A          252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK-ENSQEFFKFFQKAVDLNP-EYPPTYY-HRGQMYFILQDY  326 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS-SCCHHHHHHHHHHHHHCT-TCHHHHH-HHHHHHHHTTCH
T ss_pred             HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh-cCHHHHHHHHHHHhccCC-CCHHHHH-HHHHHHHhcCCH
Confidence            444579999999999999876  56678888888888888 899999999999865432 2344444 57777888 999


Q ss_pred             HhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          322 ADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       322 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      ++|.+.|++.........  ..|..+...|.+.|++++|...+++..+.. ..+...+..+...+...|++++|.+.++.
T Consensus       327 ~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  403 (537)
T 3fp2_A          327 KNAKEDFQKAQSLNPENV--YPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI  403 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999999888765444  489999999999999999999999998763 33466888888999999999999999987


Q ss_pred             HHHcCC-----CCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccH
Q 010739          402 IEVMNS-----LCKKKTLSWLLRGYIKG----------GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNV  466 (502)
Q Consensus       402 m~~~~~-----~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~  466 (502)
                      ......     ......+......|.+.          |++++|...|++..+.. +.+...+..+-..+..    .|+.
T Consensus       404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~----~g~~  478 (537)
T 3fp2_A          404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQ----MEKI  478 (537)
T ss_dssp             HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCH
T ss_pred             HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----hccH
Confidence            755431     11222234455667777          99999999999998754 2356677778888877    7999


Q ss_pred             HHHHHHHhhhhhcC
Q 010739          467 EAYLNLCKRLSDTS  480 (502)
Q Consensus       467 ~~a~~~~~~m~~~~  480 (502)
                      ++|...++...+..
T Consensus       479 ~~A~~~~~~al~~~  492 (537)
T 3fp2_A          479 DEAIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999886543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.62  E-value=4.1e-12  Score=122.41  Aligned_cols=299  Identities=8%  Similarity=-0.013  Sum_probs=227.0

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-
Q 010739          148 NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-  226 (502)
Q Consensus       148 ~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-  226 (502)
                      +..+..+...+.        ..|++++|...|++..+.. +.+..+|..+...|.+.|++++|...|++..+..  |+. 
T Consensus         3 ~~~~~~~~~~~~--------~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~   71 (359)
T 3ieg_A            3 VEKHLELGKKLL--------AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFT   71 (359)
T ss_dssp             HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcc
Confidence            345555556566        8999999999999998753 3468899999999999999999999999998764  322 


Q ss_pred             ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC----CHhHHHHH------------HHHHHhccccHHHHH
Q 010739          227 GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP----EVYSYLIA------------LTAVVKELNEFGKAL  290 (502)
Q Consensus       227 ~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~ty~~l------------i~~~~~~~~~~~~a~  290 (502)
                      ..|..        +...+...|++++|.+.|++....  .|    +...+..+            ...+... |++++|.
T Consensus        72 ~~~~~--------l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~  140 (359)
T 3ieg_A           72 AARLQ--------RGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAI  140 (359)
T ss_dssp             HHHHH--------HHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             hHHHH--------HHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHH
Confidence            22222        556666689999999999998865  55    33344433            4677777 8999999


Q ss_pred             HHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          291 RKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       291 ~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      +.+++..+..- .+...+. .+...|.. |++++|.+.+++.......  +...|..+...|...|++++|...|++..+
T Consensus       141 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          141 TFLDKILEVCV-WDAELRE-LRAECFIKEGEPRKAISDLKAASKLKSD--NTEAFYKISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHCT-TCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTCSC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC-CchHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999855422 2333443 56777888 9999999999998876533  445899999999999999999999999886


Q ss_pred             CCCCCCH-HHHH------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHH
Q 010739          370 VGKEADG-DLYD------------IVLAICASQNEGSAVSRLLSRIEVMNSLCKK----KTLSWLLRGYIKGGHINDAAE  432 (502)
Q Consensus       370 ~g~~p~~-~t~~------------~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~  432 (502)
                      .  .|+. ..+.            .+...+...|++++|.+.++........ +.    ..+..+...|.+.|++++|.+
T Consensus       217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            4  3332 2222            2245688999999999999888776522 22    224457788999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          433 TLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       433 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      .|++..+.. +.+..++..+-..+..    .|+.++|...++...+..
T Consensus       294 ~~~~~~~~~-~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          294 ICSEVLQME-PDNVNALKDRAEAYLI----EEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhC-cccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            999998753 2367778888888777    799999999999886644

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.61  E-value=2.5e-12  Score=122.48  Aligned_cols=270  Identities=10%  Similarity=-0.099  Sum_probs=187.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739          187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL  265 (502)
Q Consensus       187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~  265 (502)
                      .+.+...+..+...+...|++++|.++|+++.+..  |+. ..+..        ....+...|++++|..+++++... -
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~~~~~-~   86 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPV--------HIGTLVELNKANELFYLSHKLVDL-Y   86 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHH--------HHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHH--------HHHHHHHhhhHHHHHHHHHHHHHh-C
Confidence            33455567777788888888888888888887654  221 11111        445555678888888888888765 2


Q ss_pred             CCCHhHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHh
Q 010739          266 KPEVYSYLIALTAVVKELN-EFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGV  342 (502)
Q Consensus       266 ~p~~~ty~~li~~~~~~~~-~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~  342 (502)
                      +-+...|..+...+... + ++++|.+.+++..+..  |+ ...+. .+...|.. |++++|.+.|++..........  
T Consensus        87 ~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~~~~--~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--  160 (330)
T 3hym_B           87 PSNPVSWFAVGCYYLMV-GHKNEHARRYLSKATTLE--KTYGPAWI-AYGHSFAVESEHDQAMAAYFTAAQLMKGCHL--  160 (330)
T ss_dssp             TTSTHHHHHHHHHHHHS-CSCHHHHHHHHHHHHTTC--TTCTHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH--
T ss_pred             cCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHhC--CccHHHHH-HHHHHHHHccCHHHHHHHHHHHHHhccccHH--
Confidence            23456677777777777 6 7888888888775442  32 33333 46666777 8888888888887776544433  


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--------CCCHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS--------LCKKKTL  414 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~--------~p~~~~~  414 (502)
                      .+..+...|...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++.......        ..+...+
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  239 (330)
T 3hym_B          161 PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL  239 (330)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence            66667888888888888888888877542 23456777777888888888888888876654321        2235677


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          415 SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       415 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      ..+...|.+.|++++|.+.|++..+.. ..+...+..+-..+..    .|+.++|...+++..+.
T Consensus       240 ~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          240 NNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSL----MGNFENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH----HTCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH----hccHHHHHHHHHHHHcc
Confidence            778888888888888888888877654 2245566666666665    68888888888877554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.60  E-value=1.6e-12  Score=123.92  Aligned_cols=279  Identities=10%  Similarity=-0.047  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +..+...+...|++ +.|+++|+.+.+....+...+..+...+.        ..|++++|..+++++.+.. +.+...|.
T Consensus        25 ~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~~~~~~-~~~~~~~~   94 (330)
T 3hym_B           25 VVSLAERHYYNCDF-KMCYKLTSVVMEKDPFHASCLPVHIGTLV--------ELNKANELFYLSHKLVDLY-PSNPVSWF   94 (330)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTTTHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCChhhHHHHHHHHH--------HhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence            55555566666666 67777777766655334445555555454        6667777777776666542 22455666


Q ss_pred             HHHHHHHhcC-cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739          196 KVISLYWEME-KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLI  274 (502)
Q Consensus       196 ~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~  274 (502)
                      .+...|...| ++++|.+.|++..+..  |+                                          +...|..
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~------------------------------------------~~~~~~~  130 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLE--KT------------------------------------------YGPAWIA  130 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTC--TT------------------------------------------CTHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhC--Cc------------------------------------------cHHHHHH
Confidence            6666666666 6666666666665433  21                                          1223334


Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                      +...+... |++++|.+.+++..+..-. +...+. .+...|.. |++++|.+.|++.......  +...|..+...|.+
T Consensus       131 l~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~-~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~  205 (330)
T 3hym_B          131 YGHSFAVE-SEHDQAMAAYFTAAQLMKG-CHLPML-YIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHH-TCHHHHHHHHHHHHHHTTT-CSHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHc-cCHHHHHHHHHHHHHhccc-cHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH
Confidence            44444444 4444444444444322111 111121 23333444 5555555555554443322  23466666666666


Q ss_pred             cCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          354 AGRGLEAERQLWEMKLVG--------KEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       354 ~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                      .|++++|...+++..+..        ...+..++..+...+...|++++|.+.++...... ..+...+..+...|.+.|
T Consensus       206 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g  284 (330)
T 3hym_B          206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMG  284 (330)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhc
Confidence            777777776666665431        12234566666677777777777777776665544 225566677777777777


Q ss_pred             CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 010739          426 HINDAAETLTKMLDLGLYP-EYMDRVAVLQGL  456 (502)
Q Consensus       426 ~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~  456 (502)
                      ++++|.+.|++..+.  .| +...+..+..++
T Consensus       285 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          285 NFENAVDYFHTALGL--RRDDTFSVTMLGHCI  314 (330)
T ss_dssp             CHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence            888887777776543  34 444555555555

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=2.3e-13  Score=132.20  Aligned_cols=251  Identities=12%  Similarity=-0.032  Sum_probs=115.7

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      ..|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+.+ +.+...+..        +...+...
T Consensus        76 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~--------l~~~~~~~  145 (368)
T 1fch_A           76 QEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMA--------LAVSFTNE  145 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH--------HHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHH--------HHHHHHHc
Confidence            5666666666666666542 2355566666666666666666666666665543 111112222        33334445


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHh-HHHH---------------HHHHHHhccccHHHHHHHHHHHHHcCCC-CchhchHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVY-SYLI---------------ALTAVVKELNEFGKALRKLKGYVRAGSI-AELDGKNL  310 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~-ty~~---------------li~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~  310 (502)
                      |++++|++.|+++....  |+.. .+..               .+..+.+. |++++|...+++..+..-. ++..++. 
T Consensus       146 g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~~-  221 (368)
T 1fch_A          146 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD-SLFLEVKELFLAAVRLDPTSIDPDVQC-  221 (368)
T ss_dssp             TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH-HHHHHHHHHHHHHHHHSTTSCCHHHHH-
T ss_pred             CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc-ccHHHHHHHHHHHHHhCcCcccHHHHH-
Confidence            66666666666555432  2111 1100               12222233 4555555555555322111 1222332 


Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      .+...|.. |++++|.+.|+++......  +..+|..+...|.+.|++++|...|++..+.. ..+...+..+...+...
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSVRPN--DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence            24444444 5555555555544443221  22345555555555555555555555544321 11234444444555555


Q ss_pred             CChhHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739          390 NEGSAVSRLLSRIEVMNSLC----------KKKTLSWLLRGYIKGGHINDAAETLT  435 (502)
Q Consensus       390 ~~~~~a~~l~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~l~~  435 (502)
                      |++++|.+.++.........          ...+|..+..+|.+.|+.++|..+++
T Consensus       299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            55555555554433321100          13444445555555555555554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.58  E-value=5.4e-13  Score=129.49  Aligned_cols=288  Identities=14%  Similarity=-0.014  Sum_probs=214.1

Q ss_pred             hhccHhhHHH-HHHHHhhCCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHH
Q 010739          168 EERGVGDVVD-LLVDMDCVGL---KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAW  242 (502)
Q Consensus       168 ~~~~~~~a~~-~~~~m~~~g~---~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~  242 (502)
                      -.+++++|.. .+++..+..-   ..+...+..+...|.+.|++++|...|+++.+..  |+ ...+..        +..
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~--------l~~  106 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQY--------LGT  106 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHH--------HHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHH
Confidence            3467777877 7765443211   1134568889999999999999999999998765  33 223333        556


Q ss_pred             HHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHH-----------
Q 010739          243 KMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLG-----------  311 (502)
Q Consensus       243 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~-----------  311 (502)
                      .+...|++++|++.|++..... +.+..++..+...+... |++++|.+.+++..+..-........ .           
T Consensus       107 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  183 (368)
T 1fch_A          107 TQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTP-AEEGAGGAGLGP  183 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred             HHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHH-HHHHhhhhcccH
Confidence            6667899999999999998763 34678899999999999 89999999999996654222111110 1           


Q ss_pred             ---HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739          312 ---LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICA  387 (502)
Q Consensus       312 ---li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~  387 (502)
                         .+..+.. |++++|...|+++........+..+|..+...|.+.|++++|...|++..+.. ..+...|..+...+.
T Consensus       184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~  262 (368)
T 1fch_A          184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA  262 (368)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence               1333336 99999999999998876553355699999999999999999999999988752 235678888999999


Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC---C-------CHHHHHHHHHHHH
Q 010739          388 SQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY---P-------EYMDRVAVLQGLR  457 (502)
Q Consensus       388 ~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p-------~~~t~~~ll~~~~  457 (502)
                      ..|++++|.+.++...... ..+...+..+...|.+.|++++|.+.|++..+..-.   |       ...+|..+..++.
T Consensus       263 ~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  341 (368)
T 1fch_A          263 NGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS  341 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence            9999999999999887764 346788888999999999999999999998764211   1       2578888888887


Q ss_pred             ccccccccHHHHHHHHh
Q 010739          458 KRIQQSGNVEAYLNLCK  474 (502)
Q Consensus       458 ~~~~~~~~~~~a~~~~~  474 (502)
                      .    .|+.++|..+++
T Consensus       342 ~----~g~~~~A~~~~~  354 (368)
T 1fch_A          342 M----LGQSDAYGAADA  354 (368)
T ss_dssp             H----HTCGGGHHHHHT
T ss_pred             H----hCChHhHHHhHH
Confidence            6    788888888765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.55  E-value=1.9e-12  Score=121.69  Aligned_cols=251  Identities=12%  Similarity=0.063  Sum_probs=160.9

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCCh--HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739          123 FSQEGRDSWCALEVFEWLKKENRVDN--ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL  200 (502)
Q Consensus       123 ~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~  200 (502)
                      .-..|++ ..|++.++...... |+.  ...-.+.+++.        ..|+++.|...++.    .-+|+..++..+...
T Consensus         9 ~~~~g~y-~~ai~~~~~~~~~~-p~~~~e~~~~l~r~yi--------~~g~~~~al~~~~~----~~~~~~~a~~~la~~   74 (291)
T 3mkr_A            9 AFYIGSY-QQCINEAQRVKPSS-PERDVERDVFLYRAYL--------AQRKYGVVLDEIKP----SSAPELQAVRMFAEY   74 (291)
T ss_dssp             HHHTTCH-HHHHHHHHHSCCCS-HHHHHHHHHHHHHHHH--------HTTCHHHHHHHSCT----TSCHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHhcccCC-chhhHHHHHHHHHHHH--------HCCCHHHHHHHhcc----cCChhHHHHHHHHHH
Confidence            3445677 67777665543322 322  23344455566        67888888875543    245677788888888


Q ss_pred             HHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739          201 YWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV  280 (502)
Q Consensus       201 ~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~  280 (502)
                      |.+.|+.++|.+.++++...+..|+..++..       .+...+...|++++|++.+++      ..+...+..+...+.
T Consensus        75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~-------~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~  141 (291)
T 3mkr_A           75 LASHSRRDAIVAELDREMSRSVDVTNTTFLL-------MAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILL  141 (291)
T ss_dssp             HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHH-------HHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHH
T ss_pred             HcCCCcHHHHHHHHHHHHhcccCCCCHHHHH-------HHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence            8888888888888888887776666443322       133444556888888888876      456677778888888


Q ss_pred             hccccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCCh
Q 010739          281 KELNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRG  357 (502)
Q Consensus       281 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  357 (502)
                      +. |+.++|.+.++++.+..  |+....+.  +.+..+.. |++++|..+|+++.....  .+...|+.+..++.+.|++
T Consensus       142 ~~-g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~  216 (291)
T 3mkr_A          142 KL-DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLNGQAACHMAQGRW  216 (291)
T ss_dssp             HT-TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHTTCH
T ss_pred             HC-CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCH
Confidence            88 78888888888885553  54432221  23344444 777777777777776632  2445777777777777777


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHcC
Q 010739          358 LEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA-VSRLLSRIEVMN  406 (502)
Q Consensus       358 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~-a~~l~~~m~~~~  406 (502)
                      ++|...|++..+.. +-+..++..+...+...|+.++ +.++++.+....
T Consensus       217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            77777777766532 1245566666666666676654 456666555443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.54  E-value=5.2e-12  Score=120.10  Aligned_cols=261  Identities=10%  Similarity=-0.067  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +-.....+.+.|++ ++|.++|+.+.+....+...+..+...+.        ..|++++|...+++..+.. +.+..++.
T Consensus        24 ~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~-~~~~~~~~   93 (327)
T 3cv0_A           24 PMEEGLSMLKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQA--------ENEKDGLAIIALNHARMLD-PKDIAVHA   93 (327)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhcC-cCCHHHHH
Confidence            66667788889999 89999999999887557778888877777        8999999999999998863 34788999


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHH--------------H--HHHHhCcHHHHHHHHHH
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLA--------------W--KMMVEGKYVDAIKLVIH  259 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~--------------~--~~~~~g~~~~a~~~~~~  259 (502)
                      .+...|.+.|++++|.+.+++..+..  |+......        ..              -  .+...|++++|.+.+++
T Consensus        94 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  163 (327)
T 3cv0_A           94 ALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGS--------VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA  163 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------------------CCTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHH--------HHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence            99999999999999999999998764  33221111        11              0  12223555555555555


Q ss_pred             HHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCc
Q 010739          260 LRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSL  339 (502)
Q Consensus       260 m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~  339 (502)
                      ..... +.+..++..+...+.+. |++++|.+.+++.                                   ......  
T Consensus       164 ~~~~~-~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~-----------------------------------~~~~~~--  204 (327)
T 3cv0_A          164 ALEMN-PNDAQLHASLGVLYNLS-NNYDSAAANLRRA-----------------------------------VELRPD--  204 (327)
T ss_dssp             HHHHS-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH-----------------------------------HHHCTT--
T ss_pred             HHhhC-CCCHHHHHHHHHHHHHh-ccHHHHHHHHHHH-----------------------------------HHhCCC--
Confidence            54431 11344444444445444 4455555544444                                   433221  


Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----------
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC----------  409 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p----------  409 (502)
                      +...|..+...|.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.++.........          
T Consensus       205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  283 (327)
T 3cv0_A          205 DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE  283 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence            22355555555556666666666666555432 1234455555556666666666666665554433111          


Q ss_pred             -CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          410 -KKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       410 -~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                       +...|..+...|.+.|+.++|..++++
T Consensus       284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          284 ATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence             345666667777777777777766654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.54  E-value=1.9e-13  Score=132.26  Aligned_cols=200  Identities=11%  Similarity=-0.054  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .|..+..++.+.|++ ++|.+.|.+.     +|..+|..+++++.        ..|++++|..+++..++.  .++..+.
T Consensus        34 vWs~La~A~l~~g~~-~eAIdsfika-----~D~~~y~~V~~~ae--------~~g~~EeAi~yl~~ark~--~~~~~i~   97 (449)
T 1b89_A           34 VWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAAN--------TSGNWEELVKYLQMARKK--ARESYVE   97 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHcC-----CCHHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHh--CccchhH
Confidence            355555555555555 4555555332     34445555555444        455555555544433332  2334455


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHH
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLI  274 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~  274 (502)
                      +.++.+|.|.|+++++.++++       .|+..+|+.        +...+...|++++|..+|..+         ..|..
T Consensus        98 ~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~--------IGd~~~~~g~yeeA~~~Y~~a---------~n~~~  153 (449)
T 1b89_A           98 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQ--------VGDRCYDEKMYDAAKLLYNNV---------SNFGR  153 (449)
T ss_dssp             -----------CHHHHTTTTT-------CC------------------------CTTTHHHHHHHT---------TCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHH--------HHHHHHHcCCHHHHHHHHHHh---------hhHHH
Confidence            555555555555555555543       144444444        444444455555555555543         24555


Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          275 ALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       275 li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                      +..++++. |++++|.+.+...      .++.+|. .++.+|.. |+++.|......+    ...++  -...++..|.+
T Consensus       154 LA~~L~~L-g~yq~AVea~~KA------~~~~~Wk-~v~~aCv~~~ef~lA~~~~l~L----~~~ad--~l~~lv~~Yek  219 (449)
T 1b89_A          154 LASTLVHL-GEYQAAVDGARKA------NSTRTWK-EVCFACVDGKEFRLAQMCGLHI----VVHAD--ELEELINYYQD  219 (449)
T ss_dssp             HHHHHHTT-TCHHHHHHHHHHH------TCHHHHH-HHHHHHHHTTCHHHHHHTTTTT----TTCHH--HHHHHHHHHHH
T ss_pred             HHHHHHHh-ccHHHHHHHHHHc------CCchhHH-HHHHHHHHcCcHHHHHHHHHHH----HhCHh--hHHHHHHHHHH
Confidence            55555555 4555555444443      1344444 34555555 5555554322110    01111  22234455555


Q ss_pred             cCChHHHHHHHHHHH
Q 010739          354 AGRGLEAERQLWEMK  368 (502)
Q Consensus       354 ~g~~~~A~~l~~~m~  368 (502)
                      .|++++|..+++.-.
T Consensus       220 ~G~~eEai~lLe~aL  234 (449)
T 1b89_A          220 RGYFEELITMLEAAL  234 (449)
T ss_dssp             TTCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHh
Confidence            555555555555444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.54  E-value=9.5e-13  Score=123.74  Aligned_cols=272  Identities=10%  Similarity=-0.019  Sum_probs=177.4

Q ss_pred             HHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010739          200 LYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAV  279 (502)
Q Consensus       200 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~  279 (502)
                      -..-.|++..|.+.++.....  .|+...=      ...++...++..|++++|+..++.    .-.|+..++..+...+
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e------~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~   75 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPS--SPERDVE------RDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYL   75 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCC--SHHHHHH------HHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccC--CchhhHH------HHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHH
Confidence            344566777777666554221  1221000      000134455566888888876544    2355667777777777


Q ss_pred             HhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChH
Q 010739          280 VKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGL  358 (502)
Q Consensus       280 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  358 (502)
                      .+. ++.++|++.++++...+..|+...+...+-..|.. |++++|.+.+++       +.+...+..+...|.+.|+++
T Consensus        76 ~~~-~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~  147 (291)
T 3mkr_A           76 ASH-SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLD  147 (291)
T ss_dssp             HCS-TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHH
T ss_pred             cCC-CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHH
Confidence            777 67888888888887777667665554344455777 888888888755       335567888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739          359 EAERQLWEMKLVGKEADGDLYD---IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLT  435 (502)
Q Consensus       359 ~A~~l~~~m~~~g~~p~~~t~~---~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~  435 (502)
                      +|...|+++.+..  |+...++   ..+..+...|++++|..+++.+.... ..+...++.+..+|.+.|++++|.+.|+
T Consensus       148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~  224 (291)
T 3mkr_A          148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQ  224 (291)
T ss_dssp             HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8888888887653  5543221   22233444578888888888877663 4577778888888888888888888888


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccccccccHH-HHHHHHhhhhhcCCchhHHHHHHHhhcchhhh
Q 010739          436 KMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVE-AYLNLCKRLSDTSLIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       436 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~  499 (502)
                      +..+.. +-+..++..+...+..    .|+.+ .+.++++++.+...-.+.+.+.+.+.+.++.+
T Consensus       225 ~al~~~-p~~~~~l~~l~~~~~~----~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~  284 (291)
T 3mkr_A          225 EALDKD-SGHPETLINLVVLSQH----LGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRL  284 (291)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            877643 2255566666666654    45544 45677777765543566677777777776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.54  E-value=1.5e-12  Score=126.55  Aligned_cols=262  Identities=9%  Similarity=-0.126  Sum_probs=140.9

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-  225 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-  225 (502)
                      +...+..+...+.        +.|++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+..  |+ 
T Consensus        64 ~~~~~~~~~~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~  132 (365)
T 4eqf_A           64 DWPGAFEEGLKRL--------KEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNN  132 (365)
T ss_dssp             TCTTHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             chhHHHHHHHHHH--------HCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC
Confidence            3344666666566        7888999999998887753 3467788888888888888888888888887654  22 


Q ss_pred             CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH-----------hHHHHHHHHHHhccccHHHHHHHHH
Q 010739          226 EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV-----------YSYLIALTAVVKELNEFGKALRKLK  294 (502)
Q Consensus       226 ~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----------~ty~~li~~~~~~~~~~~~a~~~~~  294 (502)
                      ...+..        +...+...|++++|++.|+++...  .|+.           ..+..+...+.+. |++++|.+.++
T Consensus       133 ~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~  201 (365)
T 4eqf_A          133 LKALMA--------LAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDS-SVLEGVKELYL  201 (365)
T ss_dssp             HHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CC-HHHHHHHHHHH
T ss_pred             HHHHHH--------HHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhh-hhHHHHHHHHH
Confidence            222222        444455567777777777777653  2221           1122234455555 55666666666


Q ss_pred             HHHHcCCC-CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 010739          295 GYVRAGSI-AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK  372 (502)
Q Consensus       295 ~m~~~g~~-p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  372 (502)
                      +..+..-. ++...+. .+...|.. |++++|.+.|++.......  +..+|+.+...|.+.|++++|...|++..+.  
T Consensus       202 ~al~~~p~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--  276 (365)
T 4eqf_A          202 EAAHQNGDMIDPDLQT-GLGVLFHLSGEFNRAIDAFNAALTVRPE--DYSLWNRLGATLANGDRSEEAVEAYTRALEI--  276 (365)
T ss_dssp             HHHHHSCSSCCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHhCcCccCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence            55333211 1233333 34444555 5666666555555544322  2235555555555555555555555555543  


Q ss_pred             CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 010739          373 EA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL-----------CKKKTLSWLLRGYIKGGHINDAAETLT  435 (502)
Q Consensus       373 ~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~l~~  435 (502)
                      .| +..++..+...+...|++++|.+.++........           .+...|..+-.++...|+.+.|.++.+
T Consensus       277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            22 2444555555555555555555555444332200           023444455555555555555544433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.53  E-value=3.7e-12  Score=123.69  Aligned_cols=269  Identities=10%  Similarity=-0.025  Sum_probs=207.0

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .+..+-..+.+.|++ +.|.+.|+.+.+....+...|..+...+.        ..|++++|...|++..+.. +.+..+|
T Consensus        67 ~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~  136 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQA--------ENENEQAAIVALQRCLELQ-PNNLKAL  136 (365)
T ss_dssp             THHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence            377888899999999 89999999999887557889999988888        8999999999999998863 3468899


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCcc-cccc--CCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC-CCHh
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGD-GEGQ--QGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK-PEVY  270 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-y~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~  270 (502)
                      ..+...|.+.|++++|.+.|+++.+..  |+... +...  .......+...+...|++++|+++|+++....-. ++..
T Consensus       137 ~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  214 (365)
T 4eqf_A          137 MALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD  214 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHH
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH
Confidence            999999999999999999999998754  22111 1000  0000001244555679999999999999887322 2678


Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739          271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLA  349 (502)
Q Consensus       271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  349 (502)
                      ++..+...+.+. |++++|.+.+++..+.. ..+...+. .+...|.+ |++++|.+.|++.......  +..+|..+..
T Consensus       215 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~  289 (365)
T 4eqf_A          215 LQTGLGVLFHLS-GEFNRAIDAFNAALTVR-PEDYSLWN-RLGATLANGDRSEEAVEAYTRALEIQPG--FIRSRYNLGI  289 (365)
T ss_dssp             HHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHH
Confidence            999999999999 89999999999986542 22345554 57888888 9999999999998887533  3569999999


Q ss_pred             HHHHcCChHHHHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHhcCChhHHHHHHH
Q 010739          350 MYICAGRGLEAERQLWEMKLVG---KE--------ADGDLYDIVLAICASQNEGSAVSRLLS  400 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g---~~--------p~~~t~~~li~~~~~~~~~~~a~~l~~  400 (502)
                      .|.+.|++++|...|++..+..   ..        .+...|..+-.++...|+.+.+.++.+
T Consensus       290 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          290 SCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            9999999999999999987642   11        136778888899999999998877664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.52  E-value=3e-12  Score=121.79  Aligned_cols=254  Identities=11%  Similarity=-0.008  Sum_probs=175.4

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      ..|++++|..+|+++.+.. +.+...+..+...|.+.|++++|.+.|++..+..  |                       
T Consensus        33 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------   86 (327)
T 3cv0_A           33 KLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--P-----------------------   86 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------------
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--c-----------------------
Confidence            5666666666666665542 2255566666666666666666666666665442  1                       


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHH-------------H-H
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLG-------------L-I  313 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~-------------l-i  313 (502)
                                         .+..++..+...+.+. |++++|.+.+++..+..  |+.......             + .
T Consensus        87 -------------------~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  144 (327)
T 3cv0_A           87 -------------------KDIAVHAALAVSHTNE-HNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSE  144 (327)
T ss_dssp             -------------------TCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred             -------------------CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHH
Confidence                               1233444444444444 45555555554443321  111111101             1 1


Q ss_pred             H-HHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010739          314 E-KYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNE  391 (502)
Q Consensus       314 ~-~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~  391 (502)
                      . .+.. |++++|.+.++++......  +...+..+...|.+.|++++|...+++..+.. ..+..++..+...+...|+
T Consensus       145 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  221 (327)
T 3cv0_A          145 DFFFAAPNEYRECRTLLHAALEMNPN--DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNR  221 (327)
T ss_dssp             -CCTTSHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC
Confidence            1 2566 8999999999888776543  34589999999999999999999999988753 2356788888899999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHccc
Q 010739          392 GSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-----------EYMDRVAVLQGLRKRI  460 (502)
Q Consensus       392 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~  460 (502)
                      +++|.+.++...... ..+...+..+...|.+.|++++|.+.|++..+..-..           +...+..+...+..  
T Consensus       222 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  298 (327)
T 3cv0_A          222 PQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV--  298 (327)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh--
Confidence            999999999887765 3367788889999999999999999999988654221           46778888888877  


Q ss_pred             cccccHHHHHHHHhhhh
Q 010739          461 QQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       461 ~~~~~~~~a~~~~~~m~  477 (502)
                        .|+.++|...++...
T Consensus       299 --~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          299 --MNRPDLVELTYAQNV  313 (327)
T ss_dssp             --TTCHHHHHHHTTCCS
T ss_pred             --cCCHHHHHHHHHHHH
Confidence              799999999987764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=9.3e-11  Score=107.24  Aligned_cols=225  Identities=11%  Similarity=-0.050  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcC--CCCC
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESG--LKPE  268 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g--~~p~  268 (502)
                      ...|..+-..+.+.|++++|...|++..+..  .+...|..        +...+...|++++|++.|++.....  ..|+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   74 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNN--------RAAAEYEKGEYETAISTLNDAVEQGREMRAD   74 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHH--------HHHHHHHcccHHHHHHHHHHHHHhCcccccc
Confidence            4567788888888999999999998888776  55545544        6666677899999999888877642  2223


Q ss_pred             ----HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhH
Q 010739          269 ----VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVV  343 (502)
Q Consensus       269 ----~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~  343 (502)
                          ..+|..+...+.+. +++++|...+++..+..  |+.        ..+.+ |++++|.+.++++....  +.+...
T Consensus        75 ~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~--~~~--------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~  141 (258)
T 3uq3_A           75 YKVISKSFARIGNAYHKL-GDLKKTIEYYQKSLTEH--RTA--------DILTKLRNAEKELKKAEAEAYVN--PEKAEE  141 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC--CCH--------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcC--chh--------HHHHHHhHHHHHHHHHHHHHHcC--cchHHH
Confidence                47788888899999 89999999999886543  332        23555 88999999998877753  334568


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739          344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK  423 (502)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~  423 (502)
                      |..+...+...|++++|...|++..+.. ..+...|..+...+...|++++|.+.++...... ..+...|..+...|.+
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence            8889999999999999999999988753 2357788888899999999999999998887765 3357788889999999


Q ss_pred             CCCHHHHHHHHHHHHHC
Q 010739          424 GGHINDAAETLTKMLDL  440 (502)
Q Consensus       424 ~g~~~~A~~l~~~m~~~  440 (502)
                      .|++++|.+.|++..+.
T Consensus       220 ~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          220 VKEYASALETLDAARTK  236 (258)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHh
Confidence            99999999999987754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.39  E-value=6.6e-09  Score=105.10  Aligned_cols=321  Identities=10%  Similarity=-0.036  Sum_probs=190.4

Q ss_pred             hhHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhh----hccHhhHHHHHHHHhhC
Q 010739          114 RELQLVLVYFSQ----EGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEE----ERGVGDVVDLLVDMDCV  185 (502)
Q Consensus       114 ~~~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~----~~~~~~a~~~~~~m~~~  185 (502)
                      ..+..+-..|..    .++. ++|.++|+...+.|  ++..+..+-..+.        .    .++.++|..+|++..+.
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~--~~~a~~~Lg~~y~--------~g~g~~~~~~~A~~~~~~a~~~  144 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDY-AQAVIWYKKAALKG--LPQAQQNLGVMYH--------EGNGVKVDKAESVKWFRLAAEQ  144 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHH--------HTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHH--------cCCCCCCCHHHHHHHHHHHHHC
Confidence            335555555666    6666 67777777776665  4444444444333        3    56777777777777665


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHH
Q 010739          186 GLKPGFSMIEKVISLYWE----MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLV  257 (502)
Q Consensus       186 g~~p~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~  257 (502)
                      |   +...+..|-..|..    .++.++|.+.|++..+.|   +...+..        +...+..    .++.++|++.|
T Consensus       145 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~--------Lg~~y~~g~g~~~~~~~A~~~~  210 (490)
T 2xm6_A          145 G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ--------LGYMYSRGLGVERNDAISAQWY  210 (490)
T ss_dssp             T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH--------HHHHHHHTSSSCCCHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH--------HHHHHhcCCCCCcCHHHHHHHH
Confidence            4   45566666666666    667777777777776654   1111111        2222222    46777777777


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHh----ccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh-----cCcHHhHHHHH
Q 010739          258 IHLRESGLKPEVYSYLIALTAVVK----ELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ-----SDLLADGSRLS  328 (502)
Q Consensus       258 ~~m~~~g~~p~~~ty~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~-----~g~~~~a~~~~  328 (502)
                      ++-.+.|   +...+..+-..+..    . ++.++|.++++...+.|.. + ..+  .+-..|.     .++.++|.+.|
T Consensus       211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~-~~~~~A~~~~~~a~~~~~~-~-a~~--~lg~~y~~g~~~~~d~~~A~~~~  282 (490)
T 2xm6_A          211 RKSATSG---DELGQLHLADMYYFGIGVT-QDYTQSRVLFSQSAEQGNS-I-AQF--RLGYILEQGLAGAKEPLKALEWY  282 (490)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHTTTCH-H-HHH--HHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHCCCH-H-HHH--HHHHHHHCCCCCCCCHHHHHHHH
Confidence            7766653   44555555555554    3 5677777777776555421 1 111  1222222     26777777777


Q ss_pred             HHHHHcCCCCchHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHH
Q 010739          329 SWAIQEGGSSLYGVVHERLLAMYICA-----GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN---EGSAVSRLLS  400 (502)
Q Consensus       329 ~~m~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~l~~  400 (502)
                      ++..+.+.    ...+..+-..|...     ++.++|...|++..+.|   +...+..+-..+...|   +.++|.+.++
T Consensus       283 ~~a~~~~~----~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~  355 (490)
T 2xm6_A          283 RKSAEQGN----SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFR  355 (490)
T ss_dssp             HHHHTTTC----HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             HHHHHcCC----HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence            77665532    22555666666665     77777777777777654   3344555555555544   5667777777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          401 RIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       401 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      ...+.+   +...+..|-..|..    .++.++|.+.|++..+.|   +...+..|-..+..-....++.++|...++..
T Consensus       356 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  429 (490)
T 2xm6_A          356 KAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA  429 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            666553   55666666666776    677778888887777765   23344444444432111246777777777777


Q ss_pred             hhcC
Q 010739          477 SDTS  480 (502)
Q Consensus       477 ~~~~  480 (502)
                      .+.+
T Consensus       430 ~~~~  433 (490)
T 2xm6_A          430 STND  433 (490)
T ss_dssp             HHHH
T ss_pred             HHCC
Confidence            6654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.39  E-value=8.2e-09  Score=104.41  Aligned_cols=289  Identities=11%  Similarity=0.018  Sum_probs=184.2

Q ss_pred             HHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCH
Q 010739          116 LQLVLVYFSQ----EGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGF  191 (502)
Q Consensus       116 ~~~ll~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~  191 (502)
                      +..+-..|..    .++. ++|.++|+...+.+  +...+..+-..+..    ..+..++.++|..+|++..+.|   +.
T Consensus       114 ~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~----g~g~~~d~~~A~~~~~~a~~~~---~~  183 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDK-AESVKWFRLAAEQG--RDSGQQSMGDAYFE----GDGVTRDYVMAREWYSKAAEQG---NV  183 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHH----TSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             HHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHHc----CCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            4444455555    5677 68888888777766  44555555443430    0001567888888888777764   56


Q ss_pred             HHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHc
Q 010739          192 SMIEKVISLYWE----MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRES  263 (502)
Q Consensus       192 ~~y~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~  263 (502)
                      ..+..|-..|.+    .++.++|.+.|++..+.|-.   ..+..        +...+..    .+++++|.++|++..+.
T Consensus       184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~---~a~~~--------lg~~y~~g~g~~~~~~~A~~~~~~a~~~  252 (490)
T 2xm6_A          184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDE---LGQLH--------LADMYYFGIGVTQDYTQSRVLFSQSAEQ  252 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHH--------HHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCH---HHHHH--------HHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            677777777777    78888888888877766511   11111        2222222    46788888888877665


Q ss_pred             CCCCCHhHHHHHHHHHHh----ccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc------CcHHhHHHHHHHHHH
Q 010739          264 GLKPEVYSYLIALTAVVK----ELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS------DLLADGSRLSSWAIQ  333 (502)
Q Consensus       264 g~~p~~~ty~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~------g~~~~a~~~~~~m~~  333 (502)
                      |   +...+..+-..+..    . ++.++|++.++...+.|.   ...+. .+-..|..      ++.++|.+.|++..+
T Consensus       253 ~---~~~a~~~lg~~y~~g~~~~-~d~~~A~~~~~~a~~~~~---~~a~~-~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~  324 (490)
T 2xm6_A          253 G---NSIAQFRLGYILEQGLAGA-KEPLKALEWYRKSAEQGN---SDGQY-YLAHLYDKGAEGVAKNREQAISWYTKSAE  324 (490)
T ss_dssp             T---CHHHHHHHHHHHHHTTTSS-CCHHHHHHHHHHHHTTTC---HHHHH-HHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHcCC---HHHHH-HHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence            3   34444555555555    4 678888888877765542   12221 23344433      478888888887776


Q ss_pred             cCCCCchHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 010739          334 EGGSSLYGVVHERLLAMYICAG---RGLEAERQLWEMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       334 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~  406 (502)
                      .+.+    ..+..+-..|.+.|   +.++|...|++..+.|   +...+..+-..+..    .++.++|.+.++.....+
T Consensus       325 ~~~~----~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          325 QGDA----TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             TTCH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cCCH----HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            6432    36666666666655   6778888888877764   45566666666666    678888888887776655


Q ss_pred             CCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC
Q 010739          407 SLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLY  443 (502)
Q Consensus       407 ~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~  443 (502)
                         +...+..|-..|.+    .++.++|.+.|++..+.|..
T Consensus       398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence               45666667777776    78888888888887776644

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.35  E-value=4.1e-09  Score=107.80  Aligned_cols=116  Identities=10%  Similarity=0.004  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhh
Q 010739           85 EFFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVK  163 (502)
Q Consensus        85 ~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~  163 (502)
                      .+++|..+|+++. ..|.          ++..|...+..+.+.|+. +.|.++|+...... |+...|...+.....   
T Consensus        27 ~~~~a~~~~e~al~~~P~----------~~~~w~~~~~~~~~~~~~-~~a~~~~~ral~~~-p~~~lw~~~~~~~~~---   91 (530)
T 2ooe_A           27 PIDKARKTYERLVAQFPS----------SGRFWKLYIEAEIKAKNY-DKVEKLFQRCLMKV-LHIDLWKCYLSYVRE---   91 (530)
T ss_dssp             CHHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHHHTTCH-HHHHHHHHHHTTTC-CCHHHHHHHHHHHHH---
T ss_pred             CHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcC-CChHHHHHHHHHHHH---
Confidence            3778888888876 4454          344588999999999999 89999999998776 677777766653321   


Q ss_pred             hhhhhhccHhhHHH----HHHHHhh-CCCCC-CHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHH
Q 010739          164 KYIEEERGVGDVVD----LLVDMDC-VGLKP-GFSMIEKVISLYWE---------MEKKERAVLFVKAVLS  219 (502)
Q Consensus       164 ~~~~~~~~~~~a~~----~~~~m~~-~g~~p-~~~~y~~li~~~~~---------~g~~~~A~~l~~~m~~  219 (502)
                          ..|+.+.|.+    +|+.... .|..| +...|...+....+         .|+++.|.++|++..+
T Consensus        92 ----~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A           92 ----TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             ----HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             ----HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence                3455555554    6665543 35443 45677777776654         6888888888888776

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.32  E-value=5.9e-09  Score=112.74  Aligned_cols=343  Identities=12%  Similarity=0.048  Sum_probs=237.7

Q ss_pred             HHHHHHHHHhhcCChH------HHHHH-----Hhccc----------ChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 010739           86 FFEAIEELERMTREPS------DILEE-----MNDRL----------SARELQLVLVYFSQEGRDSWCALEVFEWLKKEN  144 (502)
Q Consensus        86 ~~~a~~~~~~~~~~~~------~~~~~-----~~~~~----------~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~  144 (502)
                      ..+|++++++...+|+      .+-..     +....          ..-....+-..+...|.+ ++|.++|++..   
T Consensus      1001 p~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgly-EEAf~IYkKa~--- 1076 (1630)
T 1xi4_A         1001 PNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELF-EEAFAIFRKFD--- 1076 (1630)
T ss_pred             HHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCH-HHHHHHHHHcC---
Confidence            7889999999885555      11111     11111          111133345667778888 79999998862   


Q ss_pred             CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCC
Q 010739          145 RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAY  224 (502)
Q Consensus       145 ~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p  224 (502)
                       ......+.++.           ..+++++|.++.++..      +..+|..+-.++.+.|++++|.+-|..-      -
T Consensus      1077 -~~~~A~~VLie-----------~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A         1077 -VNTSAVQVLIE-----------HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred             -CHHHHHHHHHH-----------HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence             22233455554           5678999999887542      3668889999999999999999998553      2


Q ss_pred             CCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc
Q 010739          225 AEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE  304 (502)
Q Consensus       225 ~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~  304 (502)
                      |...|..        ++..+...|++++|+++|..-++..  ++....+.+..+|++. +++++....+    +   .++
T Consensus      1133 D~say~e--------Va~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl-~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A         1133 DPSSYME--------VVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT-NRLAELEEFI----N---GPN 1194 (1630)
T ss_pred             ChHHHHH--------HHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhh-cCHHHHHHHH----h---CCC
Confidence            2223333        6777778899999999998766543  4444444588999999 7787544432    1   334


Q ss_pred             hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010739          305 LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL  383 (502)
Q Consensus       305 ~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li  383 (502)
                      ...+. .+-..|.. |++++|..+|...          ..|..+...|++.|++++|.+.+++-      -+..+|..+-
T Consensus      1195 ~ad~~-~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A         1195 NAHIQ-QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred             HHHHH-HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence            44444 35555667 9999999999762          38999999999999999999999876      3668898888


Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcccccc
Q 010739          384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQS  463 (502)
Q Consensus       384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  463 (502)
                      .+|...|++..|......     +.-+...+..++..|.+.|.+++|..+++.-+... +-....|.-+-..+++.  .-
T Consensus      1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy--~p 1329 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF--KP 1329 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC--CH
Confidence            999999988888764432     34467778899999999999999999998765433 23344555555555431  14


Q ss_pred             ccHHHHHHHHhhhhhc---------CCchhHHHHHHHhhcchhhh
Q 010739          464 GNVEAYLNLCKRLSDT---------SLIGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       464 ~~~~~a~~~~~~m~~~---------~~~~~~li~~y~~~g~~~~~  499 (502)
                      +++.++++.|..-...         ..+++-++..|.+-|.++.|
T Consensus      1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A         1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred             HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            6677777776544331         22577899999999988765

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=7.4e-10  Score=101.14  Aligned_cols=222  Identities=9%  Similarity=0.003  Sum_probs=162.1

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC--CCC-
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL--KPG-  190 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~--~p~-  190 (502)
                      ..|..+-..+.+.|++ +.|++.|+...+.. .+...|..+...+.        ..|++++|...+++..+..-  .++ 
T Consensus         6 ~~~~~~g~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~a~~~~~~~~~~~   75 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEY--------EKGEYETAISTLNDAVEQGREMRADY   75 (258)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHH--------HcccHHHHHHHHHHHHHhCcccccch
Confidence            3477788889999999 89999999999888 88888888888777        89999999999999877431  122 


Q ss_pred             ---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC
Q 010739          191 ---FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP  267 (502)
Q Consensus       191 ---~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p  267 (502)
                         ..+|..+...|.+.|++++|...|++..+..  |+               ...+...|++++|.+.+++....  .|
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~---------------~~~~~~~~~~~~a~~~~~~~~~~--~~  136 (258)
T 3uq3_A           76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT---------------ADILTKLRNAEKELKKAEAEAYV--NP  136 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---------------HHHHHHHHHHHHHHHHHHHHHHC--CH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch---------------hHHHHHHhHHHHHHHHHHHHHHc--Cc
Confidence               5889999999999999999999999998754  22               23344568888888888887764  33


Q ss_pred             -CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739          268 -EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE  345 (502)
Q Consensus       268 -~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~  345 (502)
                       +...+..+...+... |++++|...+++..+..- .+...+. .+...|.. |++++|.+.|++........  ...|.
T Consensus       137 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~-~~~~~~~-~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~  211 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAP-EDARGYS-NRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYI  211 (258)
T ss_dssp             HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH
T ss_pred             chHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCc-ccHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHhCHHH--HHHHH
Confidence             345666677777777 788888888877754321 1233333 35555666 77777777777766654332  34666


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      .+...|.+.|++++|...|++..+
T Consensus       212 ~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          212 RKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHH
Confidence            677777777777777777776554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.28  E-value=1.3e-08  Score=103.92  Aligned_cols=352  Identities=9%  Similarity=-0.052  Sum_probs=210.9

Q ss_pred             hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739          113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS  192 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  192 (502)
                      ...|..++. +.+.|+. +.|..+|+.+.+..+-+...|...+....        +.|++++|..+|++..+.  .|+..
T Consensus        13 ~~~w~~l~~-~~~~~~~-~~a~~~~e~al~~~P~~~~~w~~~~~~~~--------~~~~~~~a~~~~~ral~~--~p~~~   80 (530)
T 2ooe_A           13 LDAWSILIR-EAQNQPI-DKARKTYERLVAQFPSSGRFWKLYIEAEI--------KAKNYDKVEKLFQRCLMK--VLHID   80 (530)
T ss_dssp             HHHHHHHHH-HHHSSCH-HHHHHHHHHHHTTCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHTTT--CCCHH
T ss_pred             HHHHHHHHH-HHHhCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHhc--CCChH
Confidence            344777787 4788999 89999999999887457788988888665        889999999999999875  36888


Q ss_pred             HHHHHHHHH-HhcCcHHHHHH----HHHHHHHc-CCCCCCccccccCCCCchHHHHHHH--------------HhCcHHH
Q 010739          193 MIEKVISLY-WEMEKKERAVL----FVKAVLSR-GIAYAEGDGEGQQGGPTGYLAWKMM--------------VEGKYVD  252 (502)
Q Consensus       193 ~y~~li~~~-~~~g~~~~A~~----l~~~m~~~-~~~p~~~ty~~~~~~~~~~~~~~~~--------------~~g~~~~  252 (502)
                      .|...+... ...|+.++|.+    +|+..... |..|+.            .-+|...              ..|++++
T Consensus        81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~  148 (530)
T 2ooe_A           81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS------------YQIWVDYINFLKGVEAVGSYAENQRITA  148 (530)
T ss_dssp             HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTC------------HHHHHHHHHHHHHSCCCSSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCccc------------HHHHHHHHHHHhcCCCcccHHHHhHHHH
Confidence            887777543 34577666554    77766543 544431            1233221              1588999


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHH---H--------H--hccccHHHHHHHHHHHH--HcC-------CCCc------
Q 010739          253 AIKLVIHLRESGLKPEVYSYLIALTA---V--------V--KELNEFGKALRKLKGYV--RAG-------SIAE------  304 (502)
Q Consensus       253 a~~~~~~m~~~g~~p~~~ty~~li~~---~--------~--~~~~~~~~a~~~~~~m~--~~g-------~~p~------  304 (502)
                      |.++|++.......+....|......   +        .  +. ++++.|..++.+..  ..+       +.|+      
T Consensus       149 a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~  227 (530)
T 2ooe_A          149 VRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRS-RDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA  227 (530)
T ss_dssp             HHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence            99999988873111112333322110   0        0  11 23444443333210  000       1111      


Q ss_pred             --------------------------------------------hhchHHHHHHHHh--------cCcHH-------hHH
Q 010739          305 --------------------------------------------LDGKNLGLIEKYQ--------SDLLA-------DGS  325 (502)
Q Consensus       305 --------------------------------------------~~~~~~~li~~~~--------~g~~~-------~a~  325 (502)
                                                                  ...|. .....+.        .|+++       +|.
T Consensus       228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~-~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~  306 (530)
T 2ooe_A          228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWY-EAAQYLEQSSKLLAEKGDMNNAKLFSDEAA  306 (530)
T ss_dssp             HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence                                                        11111 1222222        26655       677


Q ss_pred             HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739          326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG--DLYDIVLAICASQNEGSAVSRLLSRIE  403 (502)
Q Consensus       326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~~~~~~a~~l~~~m~  403 (502)
                      .+|++....-.| .+...|..+...+.+.|++++|..+|++..+  +.|+.  ..|......+.+.|++++|.++|+...
T Consensus       307 ~~~~~Al~~~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          307 NIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHTTTTCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            777766542222 3456777777777788888888888888776  34542  467777777777778888888887766


Q ss_pred             HcCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC
Q 010739          404 VMNSLCKKKTLSWLLR-GYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL  481 (502)
Q Consensus       404 ~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~  481 (502)
                      .... .+...|..... .+...|+.++|..+|++.++..  | +...|..++..+.+    .|+.++|..+++.......
T Consensus       384 ~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          384 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             TCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHSCC
T ss_pred             hccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhccC
Confidence            5421 12222222111 2335788888888888776542  4 45566666666655    6888888888887755421


Q ss_pred             --------chhHHHHHHHhhcchhhhh
Q 010739          482 --------IGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       482 --------~~~~li~~y~~~g~~~~~~  500 (502)
                              +....+....+.|+.+.+.
T Consensus       457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~  483 (530)
T 2ooe_A          457 LPPEKSGEIWARFLAFESNIGDLASIL  483 (530)
T ss_dssp             SCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                    2222344455567666554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.26  E-value=9.7e-09  Score=111.08  Aligned_cols=311  Identities=11%  Similarity=0.052  Sum_probs=164.1

Q ss_pred             cccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCC---CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739          109 DRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENR---VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV  185 (502)
Q Consensus       109 ~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~  185 (502)
                      +...|++....+.+|...|.+ .+|+++++...-.+.   -+...-+.++....        +. +.....++.+.....
T Consensus       981 e~~~PeeVs~~vKaf~~aglp-~EaieLLEKivl~~s~fs~n~~LqnlLi~tAI--------ka-D~~Rv~eyI~kLd~~ 1050 (1630)
T 1xi4_A          981 ETQDPEEVSVTVKAFMTADLP-NELIELLEKIVLDNSVFSEHRNLQNLLILTAI--------KA-DRTRVMEYINRLDNY 1050 (1630)
T ss_pred             cccCHHHhHHHHHHHHhCCCH-HHHHHHHHHHHcCCCcccccHHHHHHHHHHHH--------Hh-ChhhHHHHHHHhhhc
Confidence            455688899999999999999 799999999985543   24455555665444        22 334444444433321


Q ss_pred             CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH-HhCcHHHHHHHHHHHHHcC
Q 010739          186 GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM-VEGKYVDAIKLVIHLRESG  264 (502)
Q Consensus       186 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~~m~~~g  264 (502)
                          +   ..-+-..+...|.+++|..+|++.....                 -.+..+. ..|++++|.++.++..   
T Consensus      1051 ----d---~~eIA~Iai~lglyEEAf~IYkKa~~~~-----------------~A~~VLie~i~nldrAiE~Aervn--- 1103 (1630)
T 1xi4_A         1051 ----D---APDIANIAISNELFEEAFAIFRKFDVNT-----------------SAVQVLIEHIGNLDRAYEFAERCN--- 1103 (1630)
T ss_pred             ----c---HHHHHHHHHhCCCHHHHHHHHHHcCCHH-----------------HHHHHHHHHHhhHHHHHHHHHhcC---
Confidence                1   2224455556666677766666642111                 0111111 2356666666665431   


Q ss_pred             CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhH
Q 010739          265 LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVV  343 (502)
Q Consensus       265 ~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~  343 (502)
                         +..+|..+-.++.+. |++++|.+.|..   .   -|...|. -++..|.+ |++++|.+.+....... +.+.  .
T Consensus      1104 ---~p~vWsqLAKAql~~-G~~kEAIdsYiK---A---dD~say~-eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~--I 1169 (1630)
T 1xi4_A         1104 ---EPAVWSQLAKAQLQK-GMVKEAIDSYIK---A---DDPSSYM-EVVQAANTSGNWEELVKYLQMARKKA-RESY--V 1169 (1630)
T ss_pred             ---CHHHHHHHHHHHHhC-CCHHHHHHHHHh---c---CChHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhc-cccc--c
Confidence               345555666666666 566666554432   1   2223332 35556666 66666666665444333 1111  2


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 010739          344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK  423 (502)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~  423 (502)
                      .+.+..+|++.+++++...+..       .|+...|..+-..|...|++++|..+|...         ..|..+...|++
T Consensus      1170 dt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A         1170 ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH 1233 (1630)
T ss_pred             cHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHH
Confidence            2236666666666664333321       334445555556666666666666666553         255566666666


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcch
Q 010739          424 GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKL  496 (502)
Q Consensus       424 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~  496 (502)
                      .|++++|.+.+++.      -+..+|.-+-.+|..    .|+++.|...........-....+++.|.+.|.+
T Consensus      1234 Lge~q~AIEaarKA------~n~~aWkev~~acve----~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A         1234 LGEYQAAVDGARKA------NSTRTWKEVCFACVD----GKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred             hCCHHHHHHHHHHh------CCHHHHHHHHHHHhh----hhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence            66666666666653      233555555555544    4444444444322211111233444444444444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.24  E-value=2.8e-09  Score=95.06  Aligned_cols=203  Identities=8%  Similarity=-0.153  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE  268 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~  268 (502)
                      +...|..+...|.+.|++++|.+.|++..+..  |+ ...+..        +...+...|++++|.+.|++..... +.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~--------l~~~~~~~~~~~~A~~~~~~a~~~~-~~~   75 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLV--------RAEIYQYLKVNDKAQESFRQALSIK-PDS   75 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHH--------HHHHHHHcCChHHHHHHHHHHHHhC-CCC
Confidence            34566677777777777777777777766543  21 111111        3333344566666666665555431 123


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      ..++..+...+...+|++++|...+++..+.+..|                                   .+...|..+.
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------~~~~~~~~l~  120 (225)
T 2vq2_A           76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP-----------------------------------TPYIANLNKG  120 (225)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS-----------------------------------CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc-----------------------------------chHHHHHHHH
Confidence            34444444444444124555555555554322222                                   2233444455


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  428 (502)
                      ..+.+.|++++|...|+++.+.. ..+...+..+...+...|++++|.+.++.........+...+..+...+...|+.+
T Consensus       121 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (225)
T 2vq2_A          121 ICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ  199 (225)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence            55555555555555555544321 11234444444555555555555555554444332124444444555555556666


Q ss_pred             HHHHHHHHHHH
Q 010739          429 DAAETLTKMLD  439 (502)
Q Consensus       429 ~A~~l~~~m~~  439 (502)
                      .|..+++.+..
T Consensus       200 ~a~~~~~~~~~  210 (225)
T 2vq2_A          200 AAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66655555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.24  E-value=2.3e-09  Score=97.80  Aligned_cols=201  Identities=11%  Similarity=-0.069  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCH
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEV  269 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~  269 (502)
                      ...|..+...|...|++++|.+.|+++.+..  |+ ...+..        +...+...|++++|.+.|++..... +.+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------la~~~~~~~~~~~A~~~~~~a~~~~-~~~~  105 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAA--------LAVVFQTEMEPKLADEEYRKALASD-SRNA  105 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHHC-cCcH
Confidence            3556666666666777777777766665443  11 111111        2233333455555555555444331 1133


Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLA  349 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  349 (502)
                      ..+..+...+.+. |++++|.+.+++.                                   ...+..+.+...|..+..
T Consensus       106 ~~~~~la~~~~~~-g~~~~A~~~~~~~-----------------------------------~~~~~~~~~~~~~~~la~  149 (252)
T 2ho1_A          106 RVLNNYGGFLYEQ-KRYEEAYQRLLEA-----------------------------------SQDTLYPERSRVFENLGL  149 (252)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHH-----------------------------------TTCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hHHHHHHHHHHHH-----------------------------------HhCccCcccHHHHHHHHH
Confidence            3444444444444 4444444444444                                   332122223345555555


Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 010739          350 MYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIND  429 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  429 (502)
                      .|.+.|++++|...|++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|.+.|+.++
T Consensus       150 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~  227 (252)
T 2ho1_A          150 VSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDT  227 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHH
Confidence            5666666666666666655432 1234555555566666666666666666554433 2345555556666666677777


Q ss_pred             HHHHHHHHHHC
Q 010739          430 AAETLTKMLDL  440 (502)
Q Consensus       430 A~~l~~~m~~~  440 (502)
                      |.+.++++.+.
T Consensus       228 A~~~~~~~~~~  238 (252)
T 2ho1_A          228 AASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77766666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.24  E-value=3.5e-09  Score=96.52  Aligned_cols=201  Identities=9%  Similarity=-0.032  Sum_probs=156.8

Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERL  347 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  347 (502)
                      ...|..+...+... +++++|.+.+++..+.. ..+...+. .+...|.. |++++|.+.|+++......  +...|..+
T Consensus        37 ~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~-~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l  111 (252)
T 2ho1_A           37 RDAYIQLGLGYLQR-GNTEQAKVPLRKALEID-PSSADAHA-ALAVVFQTEMEPKLADEEYRKALASDSR--NARVLNNY  111 (252)
T ss_dssp             HHHHHHHHHHHHHT-TCTGGGHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CChHHHHHHHHHHHhcC-CChHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHH
Confidence            35566677777777 78888888888875542 12333343 46666777 8899999988887776533  34588999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010739          348 LAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH  426 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  426 (502)
                      ...|.+.|++++|..+|+++.+.+..|+ ...+..+...+...|++++|.+.++...... ..+...+..+...|.+.|+
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC
Confidence            9999999999999999999987545664 5567777789999999999999998887765 3367788889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          427 INDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       427 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      +++|.+.|++..+.. ..+...+..+...+..    .|+.++|.+.++.+.+..
T Consensus       191 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          191 YVPARQYYDLFAQGG-GQNARSLLLGIRLAKV----FEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHC
Confidence            999999999988753 3456667777777766    799999999999987655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.22  E-value=7.6e-10  Score=102.27  Aligned_cols=184  Identities=8%  Similarity=-0.080  Sum_probs=118.0

Q ss_pred             hhccHhhHHHHHHHHhhCCC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGL---KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~---~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~  244 (502)
                      ..+++++|...|+++.+...   +.+..+|..+...|.+.|++++|...|++..+.+- .+...|..        +...+
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~--------la~~~   87 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNY--------LGIYL   87 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHH--------HHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHH--------HHHHH
Confidence            57899999999999988642   12467888899999999999999999999887641 12223333        45555


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~  323 (502)
                      ...|++++|++.|++..... +.+..++..+...+.+. |++++|...+++..+.  .|+..... .....+.. |+.++
T Consensus        88 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~--~~~~~~~~-~~~~~~~~~~~~~~  162 (275)
T 1xnf_A           88 TQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG-GRDKLAQDDLLAFYQD--DPNDPFRS-LWLYLAEQKLDEKQ  162 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHH-HHHHHHHHHHCHHH
T ss_pred             HHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh--CCCChHHH-HHHHHHHHhcCHHH
Confidence            56788888888888877652 22456777777777777 6788888877777543  23333222 23333344 67777


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      |...+++......+...  .|. +...+...++.++|...+++..
T Consensus       163 A~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~a~~~~~~~~  204 (275)
T 1xnf_A          163 AKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLMERLKADA  204 (275)
T ss_dssp             HHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCcchH--HHH-HHHHHHHhcCHHHHHHHHHHHh
Confidence            77766655554433222  333 4444555556666666666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.21  E-value=7e-09  Score=92.38  Aligned_cols=202  Identities=11%  Similarity=-0.062  Sum_probs=157.4

Q ss_pred             CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739          268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER  346 (502)
Q Consensus       268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~  346 (502)
                      +...+..+...+... |++++|.+.+++..+.. ..+...+. .+...|.. |++++|.+.|++........  ..+|..
T Consensus         7 ~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~   81 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRG-QDYRQATASIEDALKSD-PKNELAWL-VRAEIYQYLKVNDKAQESFRQALSIKPDS--AEINNN   81 (225)
T ss_dssp             HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             cHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhC-ccchHHHH-HHHHHHHHcCChHHHHHHHHHHHHhCCCC--hHHHHH
Confidence            346677778888888 78999999998885542 12234443 46666777 99999999999888765433  458889


Q ss_pred             HHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739          347 LLAMYICA-GRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG  424 (502)
Q Consensus       347 li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  424 (502)
                      +...|... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++...... ..+...+..+...|.+.
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~  160 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA  160 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence            99999999 999999999999988444454 5667778889999999999999999887765 23577888899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          425 GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       425 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      |++++|.+.+++..+..-..+...+..+...+..    .|+.+++...++.+...
T Consensus       161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA----LGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHh
Confidence            9999999999998875432456666666666555    79999999998887643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.20  E-value=3.5e-09  Score=97.74  Aligned_cols=240  Identities=8%  Similarity=-0.117  Sum_probs=179.6

Q ss_pred             hCcHHHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739          247 EGKYVDAIKLVIHLRESGLKP---EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p---~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~  322 (502)
                      .|++++|++.|+++.......   +..+|..+...+... |++++|...+++..+..- .+...+. .+...|.. |+++
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~-~~~~~~~-~la~~~~~~~~~~   94 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQALAIRP-DMPEVFN-YLGIYLTQAGNFD   94 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCC-CCHHHHH-HHHHHHHHTTCHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHcCC-CcHHHHH-HHHHHHHHccCHH
Confidence            589999999999998763221   357788888899999 899999999999865531 2344554 57777888 9999


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      +|.+.|++.........  ..|..+...|.+.|++++|...|+++.+.  .|+...+...+..+...|+.++|...++..
T Consensus        95 ~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99999999888754443  48999999999999999999999999874  566666666666667789999999999766


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          403 EVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY--P-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      .... .++...+ .+...+...++.++|.+.+++.......  | +...+..+-..+..    .|+.++|...++.....
T Consensus       171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS----LGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHH----cCCHHHHHHHHHHHHhC
Confidence            6544 2343343 3777788888999999999987654321  1 14666777777766    79999999999988664


Q ss_pred             CC-chhHHHHHHHhhcchhhh
Q 010739          480 SL-IGPCLVYLYIKKYKLWII  499 (502)
Q Consensus       480 ~~-~~~~li~~y~~~g~~~~~  499 (502)
                      .. ........+.+.|+++.+
T Consensus       245 ~p~~~~~~~~~~~~l~~~~~a  265 (275)
T 1xnf_A          245 NVHNFVEHRYALLELSLLGQD  265 (275)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHHHhh
Confidence            32 233445566666666543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.15  E-value=2.2e-10  Score=107.88  Aligned_cols=242  Identities=14%  Similarity=0.028  Sum_probs=157.1

Q ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc-------CCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHH
Q 010739          188 KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR-------GIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHL  260 (502)
Q Consensus       188 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m  260 (502)
                      +.+..++..+...|...|++++|..+|++..+.       .-......+..        +...+...|++++|.+.|++.
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------la~~~~~~g~~~~A~~~~~~a   95 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNI--------LALVYRDQNKYKDAANLLNDA   95 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHH--------HHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH--------HHHHHHHCCCHHHHHHHHHHH
Confidence            335678999999999999999999999998763       11111112222        455555679999999999988


Q ss_pred             HHc------CCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCchhchHHHHHHHHhc-CcHHhHHH
Q 010739          261 RES------GLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA------GSIAELDGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       261 ~~~------g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      ...      +-.| ...++..+...+... |++++|.+.+++..+.      +-.|+.......+...|.. |++++|.+
T Consensus        96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  174 (311)
T 3nf1_A           96 LAIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY  174 (311)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            764      2233 356778888888888 8999999999988543      3334333222246666888 99999999


Q ss_pred             HHHHHHHc------CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHH-------HHHHHHHH
Q 010739          327 LSSWAIQE------GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-------GKEADGDL-------YDIVLAIC  386 (502)
Q Consensus       327 ~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t-------~~~li~~~  386 (502)
                      .|++....      +..+....++..+...|.+.|++++|...+++..+.       ...+....       +..+...+
T Consensus       175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
T 3nf1_A          175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ  254 (311)
T ss_dssp             HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence            99888775      334445568888999999999999999999998753       12222111       11222233


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          387 ASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       387 ~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ...+.+.++...++...... ..+..++..+...|.+.|++++|.+.|++..+
T Consensus       255 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          255 KDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ---CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33344444444444433222 22456677788889999999999999988654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.13  E-value=1e-08  Score=94.59  Aligned_cols=223  Identities=12%  Similarity=0.068  Sum_probs=109.1

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc--cccccCCCCchHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG--DGEGQQGGPTGYLAWKMM  245 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--ty~~~~~~~~~~~~~~~~  245 (502)
                      ..|++++|...|++..+..- -+...+..+...|.+.|++++|.+.|++..+..-.|+..  .|..        +...+.
T Consensus        15 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--------lg~~~~   85 (272)
T 3u4t_A           15 KNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY--------YGKILM   85 (272)
T ss_dssp             TTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH--------HHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH--------HHHHHH
Confidence            56666666666666655421 233355556666666666666666666665522111110  0111        333334


Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHH
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGS  325 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~  325 (502)
                      ..|++++|++.|++..+.. +-+..+|..+-..+.+. |++++|.+.+++..+.  .|+                     
T Consensus        86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~--~~~---------------------  140 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNK-GNFPLAIQYMEKQIRP--TTT---------------------  140 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHT-TCHHHHHHHHGGGCCS--SCC---------------------
T ss_pred             HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc-cCHHHHHHHHHHHhhc--CCC---------------------
Confidence            4455555555555555431 11234445555555555 4555555555444222  221                     


Q ss_pred             HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 010739          326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNE---GSAVSRLLSR  401 (502)
Q Consensus       326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~---~~~a~~l~~~  401 (502)
                                    +...|..+...+...+++++|...|++..+.  .|+ ...+..+-..+...|+   .++|...++.
T Consensus       141 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          141 --------------DPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             --------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence                          2223433331222233555555555555542  222 3344444444444454   5555555543


Q ss_pred             HHHcC-CCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          402 IEVMN-SLCK------KKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       402 m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      ..... ..|+      ...|..+-..|.+.|++++|.+.|++..+.
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            33221 1222      245566777777777777777777777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.13  E-value=2.7e-09  Score=101.25  Aligned_cols=261  Identities=11%  Similarity=0.026  Sum_probs=161.9

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCCC-CccccccCCCCch
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPG----FSMIEKVISLYWEMEKKERAVLFVKAVLSR----GIAYA-EGDGEGQQGGPTG  238 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~ty~~~~~~~~~  238 (502)
                      ..|++++|...|++..+..-. +    ...|..+...|...|++++|.+.+++..+.    +-.|. ...+..       
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------   88 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN-------   88 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-------
T ss_pred             HhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH-------
Confidence            789999999999999886322 3    467889999999999999999999887543    11111 111112       


Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHcC-CCCC----HhHHHHHHHHHHhcccc--------------------HHHHHHHH
Q 010739          239 YLAWKMMVEGKYVDAIKLVIHLRESG-LKPE----VYSYLIALTAVVKELNE--------------------FGKALRKL  293 (502)
Q Consensus       239 ~~~~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~ty~~li~~~~~~~~~--------------------~~~a~~~~  293 (502)
                       +...+...|++++|.+.+++..... -.++    ..++..+-..+... |+                    +++|.+.+
T Consensus        89 -l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           89 -LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             -HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence             4445555799999999988865531 1112    33677777777777 67                    88888877


Q ss_pred             HHHHH----cCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHH
Q 010739          294 KGYVR----AGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQ  363 (502)
Q Consensus       294 ~~m~~----~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l  363 (502)
                      ++...    .+..+.. ..+. .+...|.. |++++|.+.+++.....    .+.....++..+...|...|++++|...
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFG-NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            66522    1222221 1222 34455666 88888888776655432    1222233666777777777888888777


Q ss_pred             HHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhCCCHHHHHHH
Q 010739          364 LWEMKLVGK-EAD----GDLYDIVLAICASQNEGSAVSRLLSRIEVMN----SLC-KKKTLSWLLRGYIKGGHINDAAET  433 (502)
Q Consensus       364 ~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~l  433 (502)
                      +++..+..- .++    ..++..+-..+...|++++|.+.++......    ..+ ...++..+...|.+.|++++|.+.
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            776653210 011    3345555566777777777777765443321    111 133455566677777777777777


Q ss_pred             HHHHHH
Q 010739          434 LTKMLD  439 (502)
Q Consensus       434 ~~~m~~  439 (502)
                      +++..+
T Consensus       326 ~~~a~~  331 (338)
T 3ro2_A          326 AEKHLE  331 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.13  E-value=7e-08  Score=89.20  Aligned_cols=223  Identities=10%  Similarity=-0.077  Sum_probs=147.6

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCC
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGL  265 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~  265 (502)
                      +..++..+-..|.+.|++++|.+.|++..+.+   +...+..        +...+..    .|++++|++.|++..+.+ 
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~--------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-   72 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFN--------LGVLYYQGQGVEKNLKKAASFYAKACDLN-   72 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHH--------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHH--------HHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence            45566677777778888888888888777633   1111111        3344444    677888888888777665 


Q ss_pred             CCCHhHHHHHHHHHHh----ccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh-----cCcHHhHHHHHHHHHHcCC
Q 010739          266 KPEVYSYLIALTAVVK----ELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ-----SDLLADGSRLSSWAIQEGG  336 (502)
Q Consensus       266 ~p~~~ty~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~-----~g~~~~a~~~~~~m~~~~~  336 (502)
                        +...+..+-..+..    . ++.++|++.+++..+.+   +...+. .+-..|.     .++.++|.+.|++....+ 
T Consensus        73 --~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~-~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-  144 (273)
T 1ouv_A           73 --YSNGCHLLGNLYYSGQGVS-QNTNKALQYYSKACDLK---YAEGCA-SLGGIYHDGKVVTRDFKKAVEYFTKACDLN-  144 (273)
T ss_dssp             --CHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTT---CHHHHH-HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             --CHHHHHHHHHHHhCCCCcc-cCHHHHHHHHHHHHHcC---CccHHH-HHHHHHHcCCCcccCHHHHHHHHHHHHhcC-
Confidence              56666667777777    6 67888888877776654   233332 2333333     367777777777777654 


Q ss_pred             CCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC
Q 010739          337 SSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMNSL  408 (502)
Q Consensus       337 ~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~~~  408 (502)
                         +...+..+-..|..    .+++++|...|++..+.+   +...+..+-..+..    .++.++|.+.++.....+  
T Consensus       145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--  216 (273)
T 1ouv_A          145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--  216 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--
T ss_pred             ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--
Confidence               22366666667776    778888888888777654   34556666667777    778888888877766654  


Q ss_pred             CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 010739          409 CKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLG  441 (502)
Q Consensus       409 p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g  441 (502)
                       +...+..+-..|.+    .++.++|.+.|++..+.|
T Consensus       217 -~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          217 -NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             -CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence             25566667777777    778888888888776655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.13  E-value=6.1e-09  Score=94.15  Aligned_cols=194  Identities=14%  Similarity=0.056  Sum_probs=141.3

Q ss_pred             HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-
Q 010739          240 LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-  318 (502)
Q Consensus       240 ~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-  318 (502)
                      ....+...|++++|...|++.... .+.+...+..+...+.+. +++++|.+.+++..+..- .+...+. .+...|.. 
T Consensus        29 ~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~-~la~~~~~~  104 (243)
T 2q7f_A           29 QMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSV-NELERALAFYDKALELDS-SAATAYY-GAGNVYVVK  104 (243)
T ss_dssp             -------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHH-HHHHHHHHT
T ss_pred             HHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC-cchHHHH-HHHHHHHHh
Confidence            445556679999999999998864 233577788888888888 799999999988855431 2334443 46666777 


Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      |++++|.+.|+++.......  ...|..+...+.+.|++++|...+++..+.. ..+...+..+...+...|++++|.+.
T Consensus       105 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          105 EMYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             TCHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999888766444  3478888888999999999999999987653 23567777788888999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      ++...... ..+..++..+...|.+.|++++|.+.|++..+..
T Consensus       182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            98877654 3357788888899999999999999999887643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.12  E-value=5.3e-09  Score=93.42  Aligned_cols=193  Identities=13%  Similarity=-0.018  Sum_probs=107.6

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE  226 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~  226 (502)
                      +...+..+-..+.        +.|++++|...|++..+.. +-+...|..+-..|.+.|++++|...|++..+.+  |+.
T Consensus         4 ~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~   72 (217)
T 2pl2_A            4 AEQNPLRLGVQLY--------ALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRY   72 (217)
T ss_dssp             CCHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             cHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc
Confidence            5556666666666        8999999999999988753 3477889999999999999999999999998765  442


Q ss_pred             c-cccccCCCCchHHHHHHHHh-----------CcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHH
Q 010739          227 G-DGEGQQGGPTGYLAWKMMVE-----------GKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKL  293 (502)
Q Consensus       227 ~-ty~~~~~~~~~~~~~~~~~~-----------g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~  293 (502)
                      . .+..        +...+...           |++++|+..|++..+.  .| +...+..+-..+... |++++|+..+
T Consensus        73 ~~a~~~--------lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~-g~~~~A~~~~  141 (217)
T 2pl2_A           73 LGGYMV--------LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALL-GERDKAEASL  141 (217)
T ss_dssp             HHHHHH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHHHH--------HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHc-CChHHHHHHH
Confidence            1 1111        33333334           5666666666555543  23 234444455555555 4555555555


Q ss_pred             HHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010739          294 KGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWE  366 (502)
Q Consensus       294 ~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  366 (502)
                      ++..+..  .+...+. .+-..|.. |++++|...|++........  ...+..+...+.+.|++++|...|++
T Consensus       142 ~~al~~~--~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          142 KQALALE--DTPEIRS-ALAELYLSMGRLDEALAQYAKALEQAPKD--LDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHC--CCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHTC-------------
T ss_pred             HHHHhcc--cchHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5554443  2333332 24444444 55555555555544433222  23444555555555555555555544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.12  E-value=6.7e-09  Score=101.65  Aligned_cols=261  Identities=13%  Similarity=0.027  Sum_probs=185.4

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHc----CCCCC-CccccccCCCCch
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPG----FSMIEKVISLYWEMEKKERAVLFVKAVLSR----GIAYA-EGDGEGQQGGPTG  238 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~-~~ty~~~~~~~~~  238 (502)
                      ..|++++|...|++..+.+- .+    ..+|..+...|...|++++|...+++..+.    +-.|. ...+..       
T Consensus        21 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------   92 (406)
T 3sf4_A           21 KSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN-------   92 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred             HhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH-------
Confidence            78999999999999988632 23    367889999999999999999999987543    11111 111212       


Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcccc--------------------HHHHHHHH
Q 010739          239 YLAWKMMVEGKYVDAIKLVIHLRES----GLKP-EVYSYLIALTAVVKELNE--------------------FGKALRKL  293 (502)
Q Consensus       239 ~~~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~~~~--------------------~~~a~~~~  293 (502)
                       +...+...|++++|+..+++....    +-.+ ...++..+-..+... |+                    +++|.+.+
T Consensus        93 -la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           93 -LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             -HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence             444555579999999999987654    1111 134777788888888 78                    99999988


Q ss_pred             HHHHH----cCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHH
Q 010739          294 KGYVR----AGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQ  363 (502)
Q Consensus       294 ~~m~~----~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l  363 (502)
                      .+..+    .+..+.. ..+. .+-..|.. |++++|.+.|++.....    .+.....+|..+...|...|++++|...
T Consensus       171 ~~al~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  249 (406)
T 3sf4_A          171 EENLSLVTALGDRAAQGRAFG-NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  249 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHH-HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            77632    2222222 2332 45566777 99999999998876543    2222234788889999999999999999


Q ss_pred             HHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCCHHHHHHH
Q 010739          364 LWEMKLV----GKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNS-LCK----KKTLSWLLRGYIKGGHINDAAET  433 (502)
Q Consensus       364 ~~~m~~~----g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l  433 (502)
                      +++..+.    +-.+. ..++..+-..+...|++++|.+.++....... ..+    ..++..+...|.+.|++++|.+.
T Consensus       250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  329 (406)
T 3sf4_A          250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF  329 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9987643    11111 45677777899999999999999976644321 112    45667788899999999999999


Q ss_pred             HHHHHH
Q 010739          434 LTKMLD  439 (502)
Q Consensus       434 ~~~m~~  439 (502)
                      +++..+
T Consensus       330 ~~~al~  335 (406)
T 3sf4_A          330 AEKHLE  335 (406)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.12  E-value=1.4e-08  Score=93.64  Aligned_cols=227  Identities=9%  Similarity=-0.025  Sum_probs=162.5

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh--chHHHHHHHHh
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD--GKNLGLIEKYQ  317 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~~li~~~~  317 (502)
                      ...+...|++++|++.|++..+.  .| +...+..+...+.+. |++++|.+.+++..+.+-.++..  .+. .+-..|.
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~lg~~~~   85 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFSKVNATKAKSADFE-YYGKILM   85 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHTTSCTTTCCHHHHH-HHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhccCchhHHHHHHH-HHHHHHH
Confidence            34445567777777777777654  23 334677777777788 78888888888876644222221  133 3555677


Q ss_pred             c-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHH
Q 010739          318 S-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAV  395 (502)
Q Consensus       318 ~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a  395 (502)
                      . |++++|.+.|++.........+  .|..+...|.+.|++++|...|++..+.  .|+ ...|..+-..+...+++++|
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLD--MYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTH--HHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence            7 8888898888888776544434  8999999999999999999999988765  454 44555555255556799999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHcccccccc
Q 010739          396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH---INDAAETLTKMLDLG-LYPE------YMDRVAVLQGLRKRIQQSGN  465 (502)
Q Consensus       396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~~~~~~~~~~~~  465 (502)
                      .+.++...... ..+...+..+...+...|+   .++|...|++..+.. -.|+      ...|..+-..+..    .|+
T Consensus       162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~  236 (272)
T 3u4t_A          162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRD  236 (272)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTC
T ss_pred             HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCC
Confidence            99999887765 2346777778888888888   888999998887642 2233      2456666666666    799


Q ss_pred             HHHHHHHHhhhhhcC
Q 010739          466 VEAYLNLCKRLSDTS  480 (502)
Q Consensus       466 ~~~a~~~~~~m~~~~  480 (502)
                      .++|...+++..+..
T Consensus       237 ~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          237 KVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999986654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.11  E-value=1.2e-08  Score=91.03  Aligned_cols=197  Identities=14%  Similarity=0.006  Sum_probs=126.9

Q ss_pred             CCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739          266 KPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH  344 (502)
Q Consensus       266 ~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~  344 (502)
                      +++...+..+-..+.+. |++++|...+++..+.  .|+.......+-..+.+ |++++|...|++........  ...|
T Consensus         2 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~   76 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYAL-GRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY--LGGY   76 (217)
T ss_dssp             --CCHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHH
Confidence            34556666777777777 6788888777776543  34333222245555666 88888888887777665333  3477


Q ss_pred             HHHHHHHHHc-----------CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 010739          345 ERLLAMYICA-----------GRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKK  412 (502)
Q Consensus       345 ~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~  412 (502)
                      ..+-..|.+.           |++++|...|++..+.  .|+ ...+..+-..+...|++++|.+.++......  .+..
T Consensus        77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~  152 (217)
T 2pl2_A           77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE  152 (217)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred             HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence            7777778887           8888888888887754  453 4556666678888888888888888777766  6777


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          413 TLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       413 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      .+..+-..|...|++++|...|++..+.. +-+...+..+-..+..    .|+.++|...+++.
T Consensus       153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          153 IRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL----KGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence            88888888888888888888888877643 1244555666666655    68888888877654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.10  E-value=2.5e-09  Score=105.30  Aligned_cols=261  Identities=10%  Similarity=0.014  Sum_probs=174.3

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHcC----CCCC-CccccccCCCCch
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGF----SMIEKVISLYWEMEKKERAVLFVKAVLSRG----IAYA-EGDGEGQQGGPTG  238 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~~l~~~m~~~~----~~p~-~~ty~~~~~~~~~  238 (502)
                      ..|++++|...|++..+.+-. +.    ..|..+...|...|++++|...|++..+..    -.|. ...+..       
T Consensus        60 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------  131 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN-------  131 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred             HhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH-------
Confidence            789999999999999886322 32    578899999999999999999999876541    1111 111111       


Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcccc-----------------HHHHHHHHHHH
Q 010739          239 YLAWKMMVEGKYVDAIKLVIHLRES----GLKP-EVYSYLIALTAVVKELNE-----------------FGKALRKLKGY  296 (502)
Q Consensus       239 ~~~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~~~~-----------------~~~a~~~~~~m  296 (502)
                       +...+...|++++|++.|++....    +-.| ...++..+-..+... |+                 +++|.+.+.+.
T Consensus       132 -l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a  209 (411)
T 4a1s_A          132 -LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQEN  209 (411)
T ss_dssp             -HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence             444555579999999999887654    2122 235677777788888 78                 88888887765


Q ss_pred             HH----cCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010739          297 VR----AGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWE  366 (502)
Q Consensus       297 ~~----~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  366 (502)
                      .+    .+-.+.. ..+. .+-..|.. |++++|.+.|++.....    .+.....+|..+...|...|++++|...+++
T Consensus       210 l~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACG-NLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHH-HHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            32    2222222 2232 35555777 88888888887765533    1111233677788888888888888888887


Q ss_pred             HHHCCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          367 MKLVGKE-A----DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN----SL-CKKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       367 m~~~g~~-p----~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~----~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                      ..+..-. .    ...++..+-..+...|++++|.+.++......    .. ....++..+...|.+.|+.++|.+.|++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            6643110 1    13456666678888888888888886554321    11 1134566677888888888888888887


Q ss_pred             HHH
Q 010739          437 MLD  439 (502)
Q Consensus       437 m~~  439 (502)
                      ..+
T Consensus       369 al~  371 (411)
T 4a1s_A          369 HLQ  371 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.09  E-value=1e-07  Score=88.04  Aligned_cols=223  Identities=11%  Similarity=-0.059  Sum_probs=175.6

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCC
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE----MEKKERAVLFVKAVLSRGI  222 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~~~  222 (502)
                      ++..+..+-..+.        ..+++++|...|++..+.   -+...+..+-..|.+    .+++++|.+.|++..+.+ 
T Consensus         5 ~~~a~~~lg~~~~--------~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-   72 (273)
T 1ouv_A            5 DPKELVGLGAKSY--------KEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-   72 (273)
T ss_dssp             CHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHHH--------hCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence            4555665655555        789999999999998883   356788889999999    999999999999998876 


Q ss_pred             CCCCccccccCCCCchHHHHHHHH----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----ccccHHHHHHHHH
Q 010739          223 AYAEGDGEGQQGGPTGYLAWKMMV----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVK----ELNEFGKALRKLK  294 (502)
Q Consensus       223 ~p~~~ty~~~~~~~~~~~~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~----~~~~~~~a~~~~~  294 (502)
                        +...+..        +...+..    .+++++|++.|++..+.+   +...+..+-..+.+    . ++.++|++.++
T Consensus        73 --~~~a~~~--------lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~  138 (273)
T 1ouv_A           73 --YSNGCHL--------LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVT-RDFKKAVEYFT  138 (273)
T ss_dssp             --CHHHHHH--------HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHH
T ss_pred             --CHHHHHH--------HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcc-cCHHHHHHHHH
Confidence              2222322        4555566    899999999999998875   67788888888888    7 79999999999


Q ss_pred             HHHHcCCCCchhchHHHHHHHHh-----cCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHH
Q 010739          295 GYVRAGSIAELDGKNLGLIEKYQ-----SDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLW  365 (502)
Q Consensus       295 ~m~~~g~~p~~~~~~~~li~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~  365 (502)
                      +..+.+   +...+. .+-..|.     .++.++|.+.|++..+.+.    ...+..+-..|.+    .+++++|+..|+
T Consensus       139 ~a~~~~---~~~a~~-~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  210 (273)
T 1ouv_A          139 KACDLN---DGDGCT-ILGSLYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEALARYS  210 (273)
T ss_dssp             HHHHTT---CHHHHH-HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             HHHhcC---cHHHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            987766   233332 2444444     4899999999999887742    3478888889999    999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcC
Q 010739          366 EMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       366 ~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~  406 (502)
                      +..+.+-   ...+..+-..+..    .++.++|.+.++.....+
T Consensus       211 ~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          211 KACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            9988752   5666777778887    899999999998887766

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=1.2e-07  Score=95.13  Aligned_cols=300  Identities=11%  Similarity=-0.036  Sum_probs=191.3

Q ss_pred             ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010739          147 DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV--------GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL  218 (502)
Q Consensus       147 ~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~--------g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~  218 (502)
                      ....||.+-..+.        ..|+.++|++.|++-.+.        .-+....+|+.+-..|...|++++|...+++..
T Consensus        50 ~a~~yn~Lg~~~~--------~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           50 KATMCNLLAYLKH--------LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             CCHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            4567888877777        889999999999876442        122346789999999999999999999998876


Q ss_pred             HcC---CCC---CC-ccccccCCCCchHHHHHHHH--hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhcc--ccH
Q 010739          219 SRG---IAY---AE-GDGEGQQGGPTGYLAWKMMV--EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKEL--NEF  286 (502)
Q Consensus       219 ~~~---~~p---~~-~ty~~~~~~~~~~~~~~~~~--~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~--~~~  286 (502)
                      +..   ..+   +. .+|..        .-|+...  .+++++|++.|++....  .|+ ...+..+..++.+.+  ++.
T Consensus       122 ~i~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~  191 (472)
T 4g1t_A          122 HVCEKFSSPYRIESPELDCE--------EGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS  191 (472)
T ss_dssp             HHHHHSCCSSCCCCHHHHHH--------HHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHhHhcccccchhhHHHHHH--------HHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH
Confidence            432   111   10 11111        2333443  36899999999988765  454 334444444433321  566


Q ss_pred             HHHHHHHHHHHHcCCCCch-hchHHHHHHH----Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHH
Q 010739          287 GKALRKLKGYVRAGSIAEL-DGKNLGLIEK----YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEA  360 (502)
Q Consensus       287 ~~a~~~~~~m~~~g~~p~~-~~~~~~li~~----~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A  360 (502)
                      ++|++.+++..+.  .|+. ..+. .+...    +.. |+.++|.+.+++.........  ..+..+-..|.+.|++++|
T Consensus       192 ~~al~~~~~al~l--~p~~~~~~~-~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A  266 (472)
T 4g1t_A          192 QNAIDPLRQAIRL--NPDNQYLKV-LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT--DVLRSAAKFYRRKDEPDKA  266 (472)
T ss_dssp             CCTHHHHHHHHHH--CSSCHHHHH-HHHHHHHHCC------CHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhhc--CCcchHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHcCchHHH
Confidence            7787777766443  3432 2222 12222    333 788999999998877654443  4889999999999999999


Q ss_pred             HHHHHHHHHCCCCCC-HHHHHHHHHHHHhc-------------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010739          361 ERQLWEMKLVGKEAD-GDLYDIVLAICASQ-------------------NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRG  420 (502)
Q Consensus       361 ~~l~~~m~~~g~~p~-~~t~~~li~~~~~~-------------------~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~  420 (502)
                      ...+++..+.  .|+ ...+..+-..+...                   +..+.|...++...... ..+...+..+-..
T Consensus       267 ~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~  343 (472)
T 4g1t_A          267 IELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL  343 (472)
T ss_dssp             HHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred             HHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence            9999998864  454 34444443333221                   22345666666555544 3356677889999


Q ss_pred             HHhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH-HccccccccHHHHHHHHhhh
Q 010739          421 YIKGGHINDAAETLTKMLDLGLYPEYM--DRVAVLQGL-RKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       421 ~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~-~~~~~~~~~~~~a~~~~~~m  476 (502)
                      |...|++++|.+.|++.++....|...  .+..+-..+ ..    .|+.++|+..+++.
T Consensus       344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ai~~y~ka  398 (472)
T 4g1t_A          344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ----MKCEDKAIHHFIEG  398 (472)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT----SSCHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Confidence            999999999999999998876544332  111111111 22    57788888777655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.07  E-value=9.4e-09  Score=92.89  Aligned_cols=201  Identities=11%  Similarity=0.011  Sum_probs=146.0

Q ss_pred             CCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739          267 PEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH  344 (502)
Q Consensus       267 p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~  344 (502)
                      ....+|..+-..+.+. |++++|...+++..+.  .|+ ...+. .+...|.. |++++|.+.|++.......  +...|
T Consensus        21 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~--~~~~~~~~~-~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~   94 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEF-GDYEKAAEAFTKAIEE--NKEDAIPYI-NFANLLSSVNELERALAFYDKALELDSS--AATAY   94 (243)
T ss_dssp             ----------------------CCTTHHHHHTT--CTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred             hHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHh--CcccHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCc--chHHH
Confidence            3456677777788888 7999999999988653  333 34443 46667778 9999999999998877543  34589


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739          345 ERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG  424 (502)
Q Consensus       345 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  424 (502)
                      ..+...|.+.|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|.+.
T Consensus        95 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  172 (243)
T 2q7f_A           95 YGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE  172 (243)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence            999999999999999999999998754 3356778888899999999999999998887664 33677888899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          425 GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       425 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      |++++|.+.|++..+.. ..+..++..+...+..    .|+.++|...+++..+..
T Consensus       173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAY----KENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccC
Confidence            99999999999988764 2356677778888877    799999999999886644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.06  E-value=7.5e-08  Score=96.53  Aligned_cols=306  Identities=11%  Similarity=-0.002  Sum_probs=197.0

Q ss_pred             hhhHHHHHHHHHHcCCChHHHHHHHHHHHHc-----C---CC-ChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHh
Q 010739          113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKE-----N---RV-DNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMD  183 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-----~---~~-~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~  183 (502)
                      ...||.+-..+...|++ ++|++.|++..+.     +   .| ...+|+.+-.++.        ..|++++|...+++..
T Consensus        51 a~~yn~Lg~~~~~~G~~-~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~--------~~g~~~~A~~~~~ka~  121 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQN-EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY--------HMGRLSDVQIYVDKVK  121 (472)
T ss_dssp             CHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH--------HTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH--------HcCChHHHHHHHHHHH
Confidence            34489998999999999 8999999876532     1   23 3457887777677        8999999999998765


Q ss_pred             hC-----C-CC-CCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHH
Q 010739          184 CV-----G-LK-PGFSMIEKVISLYWEM--EKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAI  254 (502)
Q Consensus       184 ~~-----g-~~-p~~~~y~~li~~~~~~--g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~  254 (502)
                      +.     + .. -...+|+.+-.++.+.  +++++|...|++..+.+  |+...+..    ....+.......++.++|+
T Consensus       122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~----~~~~~~~~l~~~~~~~~al  195 (472)
T 4g1t_A          122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTS----GLAIASYRLDNWPPSQNAI  195 (472)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHH----HHHHHHHHHHHSCCCCCTH
T ss_pred             HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHH----HHHHHHHHhcCchHHHHHH
Confidence            42     1 11 1345676666666554  57999999999987754  54322111    0000111122247778888


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhcc---ccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHH
Q 010739          255 KLVIHLRESGLKPEVYSYLIALTAVVKEL---NEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSS  329 (502)
Q Consensus       255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~---~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~  329 (502)
                      +.|++..+.. +.+..++..+...+.+.+   ++.++|.+.+++.....  |+. ..+. .+-..|.. |++++|.+.|+
T Consensus       196 ~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~-~lg~~~~~~~~~~~A~~~~~  271 (472)
T 4g1t_A          196 DPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLR-SAAKFYRRKDEPDKAIELLK  271 (472)
T ss_dssp             HHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHH-HHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHH-HHHHHHHHcCchHHHHHHHH
Confidence            8888776542 224455555555555542   56788988888775442  332 3333 57777888 99999999999


Q ss_pred             HHHHcCCCCchHhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739          330 WAIQEGGSSLYGVVHERLLAMYIC-------------------AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN  390 (502)
Q Consensus       330 ~m~~~~~~~~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~  390 (502)
                      +........  ..+|..+-..|..                   .+..++|...+++..+.. ..+..++..+-..+...|
T Consensus       272 ~al~~~p~~--~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~  348 (472)
T 4g1t_A          272 KALEYIPNN--AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD  348 (472)
T ss_dssp             HHHHHSTTC--HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred             HHHHhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence            988765433  3466666555432                   233567777777766542 223445677778999999


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHHC
Q 010739          391 EGSAVSRLLSRIEVMNSLCKKK--TLSWLLR-GYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       391 ~~~~a~~l~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      ++++|.+.|+........+...  .+..+.. .+...|+.++|.+.|++....
T Consensus       349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i  401 (472)
T 4g1t_A          349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI  401 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            9999999998877655333221  1222222 345789999999999987764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.06  E-value=2.1e-08  Score=98.03  Aligned_cols=274  Identities=11%  Similarity=-0.020  Sum_probs=192.8

Q ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHH
Q 010739          188 KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRE  262 (502)
Q Consensus       188 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~  262 (502)
                      ......+...-..+.+.|++++|...|++..+.+  |+.     ..|..        +...+...|++++|...|++...
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~   75 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQ--------LGNAYFYLHDYAKALEYHHHDLT   75 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHH--------HHHHHHHhcCHHHHHHHHHHHHH
Confidence            3456677778888999999999999999998764  331     12222        45555667999999999998654


Q ss_pred             c----CCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHHhc-Cc-----------
Q 010739          263 S----GLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKYQS-DL-----------  320 (502)
Q Consensus       263 ~----g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~~~-g~-----------  320 (502)
                      .    +-.|. ..++..+-..+... |++++|...+++..+.    +-.+. ...+. .+-..|.. |+           
T Consensus        76 ~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~~~~~  153 (406)
T 3sf4_A           76 LARTIGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALY-NLGNVYHAKGKSFGCPGPQDVG  153 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHTCC-------C
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcccccchHHHHH-HHHHHHHHcCCcccccccchhh
Confidence            3    22232 45677788888888 8999999998877322    21111 22333 45556777 99           


Q ss_pred             ---------HHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHH
Q 010739          321 ---------LADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG-KEAD----GDLYDIV  382 (502)
Q Consensus       321 ---------~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~l  382 (502)
                               +++|.+.+++.....    ..+....+|..+-..|...|++++|...+++..+.. -.++    ..++..+
T Consensus       154 ~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  233 (406)
T 3sf4_A          154 EFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL  233 (406)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence                     999999987765432    223334578888899999999999999999876531 1122    2367777


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 010739          383 LAICASQNEGSAVSRLLSRIEVMNS-LCK----KKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE-YMDRVAV  452 (502)
Q Consensus       383 i~~~~~~~~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~l  452 (502)
                      -..+...|++++|.+.++....... .++    ..++..+...|...|++++|.+.+++..+.    +-.+. ..++..+
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  313 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL  313 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            7899999999999999976643321 111    456777889999999999999999988753    21111 3455556


Q ss_pred             HHHHHccccccccHHHHHHHHhhhh
Q 010739          453 LQGLRKRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       453 l~~~~~~~~~~~~~~~a~~~~~~m~  477 (502)
                      -..+..    .|+.++|...+++..
T Consensus       314 a~~~~~----~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          314 GNAYTA----LGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHH----HTCHHHHHHHHHHHH
T ss_pred             HHHHHH----cCCHHHHHHHHHHHH
Confidence            666655    799999999888763

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.04  E-value=1.2e-08  Score=100.36  Aligned_cols=272  Identities=14%  Similarity=0.003  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc--
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES--  263 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~--  263 (502)
                      ...+..+-..+.+.|++++|...|++..+.+  |+.     ..|..        +...+...|++++|++.|++....  
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~--------lg~~~~~~g~~~~A~~~~~~al~~~~  117 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQ--------LGNAYFYLGDYNKAMQYHKHDLTLAK  117 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHH--------HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            3455567778899999999999999998864  332     12222        455556679999999999987654  


Q ss_pred             --CCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCch-hchHHHHHHHHhc-Cc--------------
Q 010739          264 --GLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAEL-DGKNLGLIEKYQS-DL--------------  320 (502)
Q Consensus       264 --g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~~li~~~~~-g~--------------  320 (502)
                        +-.| ...++..+-..+... |++++|...+++..+.    +-.+.. ..+. .+-..|.. |+              
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~~~~~~~~~~~a  195 (411)
T 4a1s_A          118 SMNDRLGEAKSSGNLGNTLKVM-GRFDEAAICCERHLTLARQLGDRLSEGRALY-NLGNVYHAKGKHLGQRNPGKFGDDV  195 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred             HccCchHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHcCcccccccchhhhhhh
Confidence              2222 346677788888888 8999999998887332    222222 2333 45666777 99              


Q ss_pred             ---HHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 010739          321 ---LADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD----GDLYDIVLAICAS  388 (502)
Q Consensus       321 ---~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~  388 (502)
                         +++|.+.+++....    +.++....+|..+-..|...|++++|...+++..+..- .++    ...+..+...+..
T Consensus       196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (411)
T 4a1s_A          196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF  275 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence               99999998776543    22233445888888999999999999999998765311 112    2367777789999


Q ss_pred             cCChhHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHc
Q 010739          389 QNEGSAVSRLLSRIEVMNS-LC----KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG----LYP-EYMDRVAVLQGLRK  458 (502)
Q Consensus       389 ~~~~~~a~~l~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~ll~~~~~  458 (502)
                      .|++++|.+.++....... ..    ...++..+...|...|++++|.+.+++..+..    -.+ ...++..+-..+..
T Consensus       276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  355 (411)
T 4a1s_A          276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA  355 (411)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence            9999999999976544321 11    24567778899999999999999999887532    111 13355566666666


Q ss_pred             cccccccHHHHHHHHhhhhh
Q 010739          459 RIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       459 ~~~~~~~~~~a~~~~~~m~~  478 (502)
                          .|+.++|...+++..+
T Consensus       356 ----~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          356 ----IGGHERALKYAEQHLQ  371 (411)
T ss_dssp             ----TTCHHHHHHHHHHHHH
T ss_pred             ----hccHHHHHHHHHHHHH
Confidence                7999999999887744

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.03  E-value=2e-08  Score=95.09  Aligned_cols=271  Identities=13%  Similarity=0.005  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc---
Q 010739          192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES---  263 (502)
Q Consensus       192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~---  263 (502)
                      ..+...-..+.+.|++++|...|++..+.+  |+.     ..|..        +...+...|++++|++.+++....   
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~al~~~~~   75 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQ--------LGNAYFYLHDYAKALEYHHHDLTLART   75 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence            345556677889999999999999998764  332     22222        455566679999999999986543   


Q ss_pred             -CCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHHhc-Cc---------------
Q 010739          264 -GLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKYQS-DL---------------  320 (502)
Q Consensus       264 -g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~~~-g~---------------  320 (502)
                       +-.|. ..++..+-..+... |++++|...+++..+.    +-.+. ..++. .+...|.. |+               
T Consensus        76 ~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~  153 (338)
T 3ro2_A           76 IGDQLGEAKASGNLGNTLKVL-GNFDEAIVCCQRHLDISRELNDKVGEARALY-NLGNVYHAKGKSFGCPGPQDTGEFPE  153 (338)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHTSSSSSCC----CCH
T ss_pred             ccccHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHHhcCchHHHHHHH-HHHHHHHHcCcccccchhhhhhhhhh
Confidence             22222 45677788888888 8999999998887322    11111 12333 45566777 99               


Q ss_pred             -----HHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 010739          321 -----LADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD----GDLYDIVLAIC  386 (502)
Q Consensus       321 -----~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~  386 (502)
                           +++|.+.+++....    +..+....++..+...|...|++++|...+++..+..- .++    ..++..+...+
T Consensus       154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence                 99999998776543    22233345788888899999999999999998764311 112    23677777899


Q ss_pred             HhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHH
Q 010739          387 ASQNEGSAVSRLLSRIEVMNS-LCK----KKTLSWLLRGYIKGGHINDAAETLTKMLDLG----LYP-EYMDRVAVLQGL  456 (502)
Q Consensus       387 ~~~~~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~ll~~~  456 (502)
                      ...|++++|.+.++....... ..+    ..++..+...|...|++++|.+.+++..+..    -.+ ...++..+-..+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  313 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            999999999999976543321 112    4566678889999999999999999886532    111 133555666666


Q ss_pred             HccccccccHHHHHHHHhhhhh
Q 010739          457 RKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       457 ~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      ..    .|+.++|...+++..+
T Consensus       314 ~~----~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          314 TA----LGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HH----HTCHHHHHHHHHHHHH
T ss_pred             HH----cCChHHHHHHHHHHHH
Confidence            66    7999999999887754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.98  E-value=2e-07  Score=87.95  Aligned_cols=222  Identities=9%  Similarity=-0.065  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccH-------hhHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 010739          131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGV-------GDVVDLLVDMDCVGLKP-GFSMIEKVISLYW  202 (502)
Q Consensus       131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~-------~~a~~~~~~m~~~g~~p-~~~~y~~li~~~~  202 (502)
                      +.|..+|+.......-++..|..+...+......+. +.|++       ++|...|++..+. +.| +...|..+...+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA-EKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhh-hccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence            478889999888764577888877775441100000 23664       8999999998873 234 5668999999999


Q ss_pred             hcCcHHHHHHHHHHHHHcCCCCCCc--cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739          203 EMEKKERAVLFVKAVLSRGIAYAEG--DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV  280 (502)
Q Consensus       203 ~~g~~~~A~~l~~~m~~~~~~p~~~--ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~  280 (502)
                      +.|++++|.++|++..+.  .|+..  .|..        ........|++++|.++|++..+.. +++...|........
T Consensus       111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~  179 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ--------YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY  179 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTS--SSSCTHHHHHH--------HHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhc--cccCccHHHHH--------HHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            999999999999988763  34321  1222        2222333566777777776665532 122222322211111


Q ss_pred             -hccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC-CCC-chHhHHHHHHHHHHHcC
Q 010739          281 -KELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG-GSS-LYGVVHERLLAMYICAG  355 (502)
Q Consensus       281 -~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~-~~~-~~~~~~~~li~~~~~~g  355 (502)
                       .. |+.++|..+|+...+.  .|+ ...+. .++..+.+ |+.++|..+|++..... .++ .....|..++..+.+.|
T Consensus       180 ~~~-~~~~~A~~~~~~al~~--~p~~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g  255 (308)
T 2ond_A          180 YCS-KDKSVAFKIFELGLKK--YGDIPEYVL-AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  255 (308)
T ss_dssp             HTS-CCHHHHHHHHHHHHHH--HTTCHHHHH-HHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred             HHc-CCHHHHHHHHHHHHHh--CCCcHHHHH-HHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence             13 4566666655555322  122 12221 34444444 55555555555555432 121 12334555555555555


Q ss_pred             ChHHHHHHHHHHHH
Q 010739          356 RGLEAERQLWEMKL  369 (502)
Q Consensus       356 ~~~~A~~l~~~m~~  369 (502)
                      +.++|..+++++.+
T Consensus       256 ~~~~a~~~~~~a~~  269 (308)
T 2ond_A          256 DLASILKVEKRRFT  269 (308)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.96  E-value=2.3e-08  Score=93.94  Aligned_cols=239  Identities=12%  Similarity=-0.035  Sum_probs=154.1

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739          148 NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV-------GLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSR  220 (502)
Q Consensus       148 ~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~  220 (502)
                      ..++..+...+.        ..|++++|..+|++..+.       .......++..+...|...|++++|...+++..+.
T Consensus        27 ~~~~~~l~~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   98 (311)
T 3nf1_A           27 LRTLHNLVIQYA--------SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI   98 (311)
T ss_dssp             HHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            346666666666        899999999999998873       23345678999999999999999999999988754


Q ss_pred             ------CCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc------CCCCC-HhHHHHHHHHHHhccccH
Q 010739          221 ------GIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES------GLKPE-VYSYLIALTAVVKELNEF  286 (502)
Q Consensus       221 ------~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~ty~~li~~~~~~~~~~  286 (502)
                            +-.|. ...|..        +...+...|++++|.+.|++....      +-.|+ ...+..+...+... |++
T Consensus        99 ~~~~~~~~~~~~~~~~~~--------l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~  169 (311)
T 3nf1_A           99 REKTLGKDHPAVAATLNN--------LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ-GKY  169 (311)
T ss_dssp             HHHHHCTTCHHHHHHHHH--------HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred             HHHHhCCCChHHHHHHHH--------HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc-CCH
Confidence                  21121 122222        455555679999999999988765      22333 45677788888888 899


Q ss_pred             HHHHHHHHHHHHc------CCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC-------CCCch------HhHHHH
Q 010739          287 GKALRKLKGYVRA------GSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG-------GSSLY------GVVHER  346 (502)
Q Consensus       287 ~~a~~~~~~m~~~------g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~-------~~~~~------~~~~~~  346 (502)
                      ++|.+.+++..+.      +..|+.......+...|.. |++++|.+.|+++....       ..+..      ...+..
T Consensus       170 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
T 3nf1_A          170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREE  249 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence            9999999988543      2234333222256777888 99999999998877531       11111      112222


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      +...+...+.+.+|...+....... ..+..++..+...+...|++++|.+.++....
T Consensus       250 ~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          250 CKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             C-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3333344555555666666554321 22445677777899999999999999876654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.93  E-value=1.8e-07  Score=90.93  Aligned_cols=225  Identities=8%  Similarity=-0.026  Sum_probs=156.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc-HhhHHHHHHHHhhCCCCCCHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG-VGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      |..+-..+.+.|++ +.|++.|+...+...-+...|+.+-.++.        ..|+ +++|+..|++..+..- -+...|
T Consensus       100 ~~~lg~~~~~~g~~-~~Al~~~~~al~l~P~~~~a~~~~g~~l~--------~~g~d~~eAl~~~~~al~l~P-~~~~a~  169 (382)
T 2h6f_A          100 YDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLK--------SLQKDLHEEMNYITAIIEEQP-KNYQVW  169 (382)
T ss_dssp             HHHHHHHHHHTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHHCCCh-HHHHHHHHHHHHhCccCHHHHHHHHHHHH--------HcccCHHHHHHHHHHHHHHCC-CCHHHH
Confidence            77777888899999 89999999999888447788888877676        7786 9999999999988643 377899


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL  273 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~  273 (502)
                      +.+-.+|.+.|++++|...|++..+.+  |+. ..|..        +.+.+...|++++|+..|+++..... -+...|+
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~--------lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~  238 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQH--------RQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWN  238 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHH--------HHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHH
Confidence            999999999999999999999998765  321 22222        44555557999999999999887622 2567788


Q ss_pred             HHHHHHHhccccHHHH-----HHHHHHHHHcCCCCchh-chHHHHHHHHhc-C--cHHhHHHHHHHHHHcCCCCchHhHH
Q 010739          274 IALTAVVKELNEFGKA-----LRKLKGYVRAGSIAELD-GKNLGLIEKYQS-D--LLADGSRLSSWAIQEGGSSLYGVVH  344 (502)
Q Consensus       274 ~li~~~~~~~~~~~~a-----~~~~~~m~~~g~~p~~~-~~~~~li~~~~~-g--~~~~a~~~~~~m~~~~~~~~~~~~~  344 (502)
                      .+-.++.+.++..++|     +..+++.++.  .|+.. .|+ .+...+.+ |  +.++|.+.+.++   ...+.+...+
T Consensus       239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~-~l~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al  312 (382)
T 2h6f_A          239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWN-YLKGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLI  312 (382)
T ss_dssp             HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHH-HHHHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHH
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHH-HHHHHHHccCccchHHHHHHHHHh---ccCCCCHHHH
Confidence            8888888832444555     3555555332  34332 232 34444555 5  466676666654   2223344566


Q ss_pred             HHHHHHHHHcC---------ChHHHHHHHHHH
Q 010739          345 ERLLAMYICAG---------RGLEAERQLWEM  367 (502)
Q Consensus       345 ~~li~~~~~~g---------~~~~A~~l~~~m  367 (502)
                      ..+...|.+.|         ..++|..+|+++
T Consensus       313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          313 AFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            66666666653         246666676665

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.92  E-value=7.1e-07  Score=84.14  Aligned_cols=217  Identities=9%  Similarity=-0.071  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-------hccccH-------HHHHHHHHHHHHcCCCCchh-chHHHHHHH
Q 010739          251 VDAIKLVIHLRESGLKPEVYSYLIALTAVV-------KELNEF-------GKALRKLKGYVRAGSIAELD-GKNLGLIEK  315 (502)
Q Consensus       251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~-------~~~~~~-------~~a~~~~~~m~~~g~~p~~~-~~~~~li~~  315 (502)
                      ++|..+|++.... .+-+...|..+...+.       +. |+.       ++|...|++-++. +.|+.. .|. .+...
T Consensus        33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~-~~~~~  108 (308)
T 2ond_A           33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEK-GDMNNAKLFSDEAANIYERAIST-LLKKNMLLYF-AYADY  108 (308)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhc-cchhhcccchHHHHHHHHHHHHH-hCcccHHHHH-HHHHH
Confidence            6788888888765 2334566666666654       34 454       8998888887652 245544 443 67777


Q ss_pred             Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChh
Q 010739          316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAIC-ASQNEGS  393 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~~~~~  393 (502)
                      +.+ |++++|.++|++.........+ ..|..+...+.+.|++++|..+|++..+.. .++...|....... ...|+.+
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          109 EESRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred             HHhcCCHHHHHHHHHHHHhccccCcc-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHH
Confidence            888 9999999999998874322221 389999999999999999999999988653 23344444333332 2369999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccccccccHHHHH
Q 010739          394 AVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG-LYPE--YMDRVAVLQGLRKRIQQSGNVEAYL  470 (502)
Q Consensus       394 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~~~~~a~  470 (502)
                      +|.++|+...... .-+...|..++..+.+.|++++|..+|++..... +.|+  ...|..++.....    .|+.+.|.
T Consensus       187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~----~g~~~~a~  261 (308)
T 2ond_A          187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN----IGDLASIL  261 (308)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH----HSCHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH----cCCHHHHH
Confidence            9999998776653 2367788889999999999999999999999874 5663  5667777777765    68999999


Q ss_pred             HHHhhhhh
Q 010739          471 NLCKRLSD  478 (502)
Q Consensus       471 ~~~~~m~~  478 (502)
                      .+++.+.+
T Consensus       262 ~~~~~a~~  269 (308)
T 2ond_A          262 KVEKRRFT  269 (308)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887744

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.91  E-value=2.7e-07  Score=89.58  Aligned_cols=241  Identities=12%  Similarity=0.010  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCc-HHHHHHHHHHHHHcCCCC-C
Q 010739          192 SMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGK-YVDAIKLVIHLRESGLKP-E  268 (502)
Q Consensus       192 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~-~~~a~~~~~~m~~~g~~p-~  268 (502)
                      ..|+.+-..+.+.|++++|.+.|++..+.+  |+.. .|+.        ....+...|+ +++|++.|++....  .| +
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~--------~g~~l~~~g~d~~eAl~~~~~al~l--~P~~  165 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHF--------RRVLLKSLQKDLHEEMNYITAIIEE--QPKN  165 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHH--------HHHHHHHcccCHHHHHHHHHHHHHH--CCCC
Confidence            455556666666677777777777666544  3211 1111        2223333464 77777777766654  23 4


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER  346 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~  346 (502)
                      ...|+.+-.++.+. |++++|+..+++.++.  .|+ ...|. .+-..+.+ |++++|+..|++++......  ...|+.
T Consensus       166 ~~a~~~~g~~~~~~-g~~~eAl~~~~kal~l--dP~~~~a~~-~lg~~~~~~g~~~eAl~~~~~al~l~P~~--~~a~~~  239 (382)
T 2h6f_A          166 YQVWHHRRVLVEWL-RDPSQELEFIADILNQ--DAKNYHAWQ-HRQWVIQEFKLWDNELQYVDQLLKEDVRN--NSVWNQ  239 (382)
T ss_dssp             HHHHHHHHHHHHHH-TCCTTHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHHTCCTTHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh--CccCHHHHH-HHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHH
Confidence            56666677777777 6788888877777544  333 33333 45556666 88888888888877765444  348888


Q ss_pred             HHHHHHH-cCChHHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739          347 LLAMYIC-AGRGLEA-----ERQLWEMKLVGKEA-DGDLYDIVLAICASQN--EGSAVSRLLSRIEVMNSLCKKKTLSWL  417 (502)
Q Consensus       347 li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~--~~~~a~~l~~~m~~~~~~p~~~~~~~l  417 (502)
                      +-..|.+ .|..++|     +..|++..+  +.| +...|+.+-..+...|  +.++|.+.+..+ . ....+...+..+
T Consensus       240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~L  315 (382)
T 2h6f_A          240 RYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFL  315 (382)
T ss_dssp             HHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHH
T ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHH
Confidence            8888888 6665777     467777665  345 4556666667777777  577888877776 2 223356677778


Q ss_pred             HHHHHhCC---------CHHHHHHHHHHH-HHCCCCCCHH-HHHHHHHHH
Q 010739          418 LRGYIKGG---------HINDAAETLTKM-LDLGLYPEYM-DRVAVLQGL  456 (502)
Q Consensus       418 i~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~~~-t~~~ll~~~  456 (502)
                      ...|.+.|         ..++|.++|+++ .+  +.|+.. -|..+...+
T Consensus       316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l  363 (382)
T 2h6f_A          316 VDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHH
Confidence            88887764         258888888887 43  345443 344444444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.90  E-value=2.5e-07  Score=90.17  Aligned_cols=296  Identities=9%  Similarity=-0.084  Sum_probs=176.7

Q ss_pred             HHcCCChHHHHHHHHHHHHcC-C--CChH--HHHHHHHHHhhhhhhhhhhhccHhhHH-----------HHHHHHhhCCC
Q 010739          124 SQEGRDSWCALEVFEWLKKEN-R--VDNE--TMELMVSIMCSWVKKYIEEERGVGDVV-----------DLLVDMDCVGL  187 (502)
Q Consensus       124 ~~~~~~~~~a~~~~~~m~~~~-~--~~~~--~~~~li~~~~~~~~~~~~~~~~~~~a~-----------~~~~~m~~~g~  187 (502)
                      .+.++. +.|..+++++.+.- .  .|..  .|-.++..-...      -.+.++.+.           ..++.+.....
T Consensus        23 i~~~~~-~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~------~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~   95 (383)
T 3ulq_A           23 IRRFSI-PDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNL------MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA   95 (383)
T ss_dssp             HHTTCH-HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH------HHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH
T ss_pred             HHHcCH-HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH------HHhhcCcccccccccccchhhHHHHHHhcCC
Confidence            456778 79999999987644 2  3333  334343321111      123333333           55665544211


Q ss_pred             CCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCC-CCCC----ccccccCCCCchHHHHHHHHhCcHHHHHHHHH
Q 010739          188 KPG----FSMIEKVISLYWEMEKKERAVLFVKAVLSRGI-AYAE----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVI  258 (502)
Q Consensus       188 ~p~----~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~  258 (502)
                      ..+    ...|-..-..+...|++++|...|++..+.-- .+|.    ..|..        +...+...|++++|++.++
T Consensus        96 ~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~--------lg~~~~~~~~~~~A~~~~~  167 (383)
T 3ulq_A           96 RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFK--------MSESYYYMKQTYFSMDYAR  167 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHH--------HHHHHHHTTCHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHH--------HHHHHHHcCCHHHHHHHHH
Confidence            111    11122244567789999999999999876421 1221    12222        4555556799999999998


Q ss_pred             HHHHc--CC---CC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCch-hchHHHHHHHHhc-CcHHhHHH
Q 010739          259 HLRES--GL---KP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAEL-DGKNLGLIEKYQS-DLLADGSR  326 (502)
Q Consensus       259 ~m~~~--g~---~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~~li~~~~~-g~~~~a~~  326 (502)
                      +....  ..   .| ...+++.+-..|... |++++|...+++..+.    +-.+.. .++. .+-..|.. |++++|.+
T Consensus       168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~~g~~~~A~~  245 (383)
T 3ulq_A          168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEAEKQPQLMGRTLY-NIGLCKNSQSQYEDAIP  245 (383)
T ss_dssp             HHHHHHHTCSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHHCCCHHHHHH
Confidence            87654  11   11 135677777888888 7999999988877322    211111 2333 35555777 88888888


Q ss_pred             HHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---hhHH
Q 010739          327 LSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG----KEADGDLYDIVLAICASQNE---GSAV  395 (502)
Q Consensus       327 ~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~li~~~~~~~~---~~~a  395 (502)
                      .|++....    +..+....++..+-..|.+.|++++|...+++..+..    -......+..+-..+...|+   +++|
T Consensus       246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a  325 (383)
T 3ulq_A          246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF  325 (383)
T ss_dssp             HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            88877662    2213345678888888888888888888888765431    11112234445566667777   5555


Q ss_pred             HHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          396 SRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       396 ~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ..+++..   +..|+ ...+..+-..|.+.|++++|.+.|++..+
T Consensus       326 l~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          326 FDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5555443   33332 33555577788888888888888887654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.89  E-value=8e-08  Score=88.61  Aligned_cols=134  Identities=12%  Similarity=0.034  Sum_probs=79.3

Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHc------
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRA------GSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQE------  334 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~------  334 (502)
                      ..++..+-..+... |++++|...+++..+.      +-.|.. ..+. .+-..|.. |++++|.+.|++....      
T Consensus        43 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           43 ATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKTLGKDHPAVAATLN-NLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH-HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH-HHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            45566666666666 6777777777666332      222322 2232 35555666 7777777777665554      


Q ss_pred             CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          335 GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV------GKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      ...+....+|..+...|...|++++|...|++..+.      +-.| ...++..+-..+...|++++|.+.++....
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            112334456666777777777777777777776654      1122 234555566677777777777777755543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.84  E-value=1.1e-06  Score=75.56  Aligned_cols=166  Identities=14%  Similarity=0.034  Sum_probs=108.4

Q ss_pred             CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739          268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER  346 (502)
Q Consensus       268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~  346 (502)
                      ++..|..+-..+.+. |++++|++.|++..+.  .|+.......+...|.+ |++++|...+...........  ..+..
T Consensus         4 ~~~iy~~lG~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~   78 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTK-GDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYI   78 (184)
T ss_dssp             CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHH
Confidence            455677777777777 6777777777776443  23322221245555666 777777777776665544433  36666


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 010739          347 LLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGH  426 (502)
Q Consensus       347 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~  426 (502)
                      +...+...+++++|...+.+..... .-+...+..+-..+...|++++|.+.++...... ..+...|..+-..|.+.|+
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~  156 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL  156 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence            6667777777777777777766532 2234555666677777777777777777666554 2356667777777788888


Q ss_pred             HHHHHHHHHHHHHC
Q 010739          427 INDAAETLTKMLDL  440 (502)
Q Consensus       427 ~~~A~~l~~~m~~~  440 (502)
                      +++|.+.|++.++.
T Consensus       157 ~~~A~~~~~~al~~  170 (184)
T 3vtx_A          157 RDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhC
Confidence            88888888776653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.82  E-value=1.3e-06  Score=84.97  Aligned_cols=296  Identities=9%  Similarity=-0.009  Sum_probs=190.3

Q ss_pred             hhccHhhHHHHHHHHhhCC--C--CCCHHHHHHHHHHHH--hcCcHHHHH-----------HHHHHHHHcCCCCCC-ccc
Q 010739          168 EERGVGDVVDLLVDMDCVG--L--KPGFSMIEKVISLYW--EMEKKERAV-----------LFVKAVLSRGIAYAE-GDG  229 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g--~--~p~~~~y~~li~~~~--~~g~~~~A~-----------~l~~~m~~~~~~p~~-~ty  229 (502)
                      +.+++++|..++++..+.-  .  .++...|-.++..-.  -.++++.+.           +.++.+.......+. ..|
T Consensus        24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~  103 (383)
T 3ulq_A           24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEY  103 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHH
Confidence            5899999999999886642  2  334444444443322  234444444           666666442211010 000


Q ss_pred             cccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc--CC-
Q 010739          230 EGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES----GLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA--GS-  301 (502)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~--g~-  301 (502)
                      -.     .-.....+...|++++|++.|++....    +-.+ ...+|..+-..+... |+.++|...+.+..+.  .. 
T Consensus       104 ~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~~~  177 (383)
T 3ulq_A          104 YF-----NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKEHE  177 (383)
T ss_dssp             HH-----HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCS
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCc
Confidence            00     000122234469999999999998764    1122 236778888888888 8999999998877332  11 


Q ss_pred             --CCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---
Q 010739          302 --IAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV---  370 (502)
Q Consensus       302 --~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---  370 (502)
                        .+. ..+++ .+-..|.. |++++|.+.|++.....    .+.....+|+.+-..|...|++++|...|++..+.   
T Consensus       178 ~~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          178 AYNIRLLQCHS-LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             TTHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence              111 22333 35556788 99999999998876543    22223357888999999999999999999988762   


Q ss_pred             -CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCC
Q 010739          371 -GK-EADGDLYDIVLAICASQNEGSAVSRLLSRIEVM----NSLCKKKTLSWLLRGYIKGGH---INDAAETLTKMLDLG  441 (502)
Q Consensus       371 -g~-~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g  441 (502)
                       +. .....++..+-..+...|++++|.+.++.....    +.......+..+-..|...|+   +++|+.++++.   +
T Consensus       257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~  333 (383)
T 3ulq_A          257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M  333 (383)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T
T ss_pred             hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c
Confidence             33 234566777788999999999999999765433    212223345667778888898   77888887765   4


Q ss_pred             CCCCHH-HHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739          442 LYPEYM-DRVAVLQGLRKRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       442 ~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~  477 (502)
                      ..|+.. .+..+-..+..    .|+.++|...+++..
T Consensus       334 ~~~~~~~~~~~la~~y~~----~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          334 LYADLEDFAIDVAKYYHE----RKNFQKASAYFLKVE  366 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHH
Confidence            444433 44455555555    799999999887763

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.81  E-value=2.1e-06  Score=83.03  Aligned_cols=261  Identities=10%  Similarity=-0.056  Sum_probs=172.9

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCC----ccccccCCCCch
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGF----SMIEKVISLYWEMEKKERAVLFVKAVLSRGIA-YAE----GDGEGQQGGPTG  238 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~----~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~----~ty~~~~~~~~~  238 (502)
                      ..|++++|...+++.....-..+.    .+++.+-..|...|++++|.+.+++..+..-. ++.    .++..       
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-------   98 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ-------   98 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-------
Confidence            689999999999987765322222    25677778889999999999999987653211 010    00111       


Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHc----CCC--CC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCC--Cc--hhc
Q 010739          239 YLAWKMMVEGKYVDAIKLVIHLRES----GLK--PE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSI--AE--LDG  307 (502)
Q Consensus       239 ~~~~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~--p~--~~~  307 (502)
                       +...+...|++++|.+.+++....    +..  |. ...+..+-..+... |++++|...+++.....-.  +.  ...
T Consensus        99 -la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           99 -QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             -HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             -HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence             334445579999999999987653    222  33 34566677778888 8999999999887443221  21  122


Q ss_pred             hHHHHHHHHhc-CcHHhHHHHHHHHHHcC-CCCchHhHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHH
Q 010739          308 KNLGLIEKYQS-DLLADGSRLSSWAIQEG-GSSLYGVVHE-----RLLAMYICAGRGLEAERQLWEMKLVGKEA---DGD  377 (502)
Q Consensus       308 ~~~~li~~~~~-g~~~~a~~~~~~m~~~~-~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~  377 (502)
                      +. .+-..+.. |++++|...+++..... ..... ..+.     .....+...|++++|...+++.......+   ...
T Consensus       177 ~~-~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  254 (373)
T 1hz4_A          177 LA-MLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  254 (373)
T ss_dssp             HH-HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HH-HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence            32 35555777 99999999998876542 11111 1222     23344778999999999998876543221   123


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          378 LYDIVLAICASQNEGSAVSRLLSRIEVM----NSLCKK-KTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       378 t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      .+..+...+...|+.++|...++.....    +..++. ..+..+-..|...|+.++|...+++...
T Consensus       255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4566668888999999999988765332    222222 2555577788899999999999988764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.80  E-value=5.7e-07  Score=76.93  Aligned_cols=161  Identities=13%  Similarity=0.003  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          271 SYLIALTAVVKELNEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       271 ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      .|..+...+... |++++|.+.+++..+.  .| +...+. .+...|.. |++++|.+.+++.......  +...|..+.
T Consensus        10 ~~~~~~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a   83 (186)
T 3as5_A           10 YYRDKGISHAKA-GRYSQAVMLLEQVYDA--DAFDVDVAL-HLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLG   83 (186)
T ss_dssp             HHHHHHHHHHHH-TCHHHHHHHHTTTCCT--TSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCHHHHHHHHHHHHHh--CccChHHHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence            344455555555 5666666666555322  12 222222 34444555 6666666666665554322  233666666


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  428 (502)
                      ..+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|...|+++
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A           84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence            66666777777777776665542 2244555555566666677777766666655543 224556666666777777777


Q ss_pred             HHHHHHHHHHH
Q 010739          429 DAAETLTKMLD  439 (502)
Q Consensus       429 ~A~~l~~~m~~  439 (502)
                      +|.+.+++..+
T Consensus       162 ~A~~~~~~~~~  172 (186)
T 3as5_A          162 EALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.79  E-value=4.7e-06  Score=80.60  Aligned_cols=274  Identities=10%  Similarity=-0.048  Sum_probs=174.8

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC-CCCH---
Q 010739          194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL-KPEV---  269 (502)
Q Consensus       194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~---  269 (502)
                      +...-..+...|++++|...+++.....  |+......  ......+...+...|++++|.+.+++.....- .++.   
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSR--IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHH--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            3344455678999999999999987654  22111000  00000133445557999999999998765310 1122   


Q ss_pred             -hHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCC--CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCC---C
Q 010739          270 -YSYLIALTAVVKELNEFGKALRKLKGYVRA----GSI--AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGS---S  338 (502)
Q Consensus       270 -~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~--p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~---~  338 (502)
                       .++..+-..+... |++++|...+++..+.    +..  |........+-..|.. |++++|...+++.......   +
T Consensus        93 ~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A           93 LWSLIQQSEILFAQ-GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence             3355566677777 8999999999887332    322  3222221135555677 9999999999987765422   1


Q ss_pred             chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCCC---
Q 010739          339 LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADG-DLYD-----IVLAICASQNEGSAVSRLLSRIEVMNSLC---  409 (502)
Q Consensus       339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~-----~li~~~~~~~~~~~a~~l~~~m~~~~~~p---  409 (502)
                      ....+|..+-..+...|++++|...+++.....-.++. ..+.     .....+...|+.++|...++........+   
T Consensus       172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  251 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  251 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence            13356778888899999999999999998754222211 1222     22344778999999999998775433221   


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPEYM-DRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~-t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      ....+..+...+...|++++|.+.+++....    |..++.. .+..+-.++..    .|+.++|...++..
T Consensus       252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a  319 (373)
T 1hz4_A          252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ----AGRKSDAQRVLLDA  319 (373)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHH
Confidence            1224566788899999999999999987643    3322332 34444444444    68889988887765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.79  E-value=7.3e-07  Score=76.76  Aligned_cols=163  Identities=15%  Similarity=-0.020  Sum_probs=103.6

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE  268 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~  268 (502)
                      +..+|..+-..|.+.|++++|.+.|++..+.+  |+. ..+..        +...+...|++++|++.+....... .-+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~--------la~~~~~~~~~~~a~~~~~~~~~~~-~~~   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLK--------LGKTYMDIGLPNDAIESLKKFVVLD-TTS   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHC-CCC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHhcC-chh
Confidence            56778888888999999999999998887654  332 11212        3444455688888888777776552 223


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER  346 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~  346 (502)
                      ...+..+-..+... ++.+.+...+.+..+.  .|+ ...+. .+-..|.+ |++++|.+.|++..+....  +..+|..
T Consensus        73 ~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~--~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~  146 (184)
T 3vtx_A           73 AEAYYILGSANFMI-DEKQAAIDALQRAIAL--NTVYADAYY-KLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQS  146 (184)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CccchHHHH-HHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHH
Confidence            44455555556666 6777777777666433  222 22222 35555666 7777777777776665433  2346777


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Q 010739          347 LLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       347 li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      +-..|.+.|++++|...|++..+
T Consensus       147 lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          147 IGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh
Confidence            77777777777777777777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.78  E-value=2e-07  Score=93.63  Aligned_cols=211  Identities=10%  Similarity=-0.040  Sum_probs=147.4

Q ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccH-hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHH
Q 010739          131 WCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGV-GDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKER  209 (502)
Q Consensus       131 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~  209 (502)
                      +.+++.++........+...|..+-..+.        ..|++ ++|...|++..+.. +-+...|..+-..|.+.|++++
T Consensus        85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~--------~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~  155 (474)
T 4abn_A           85 EKTLQQMEEVLGSAQVEAQALMLKGKALN--------VTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTS  155 (474)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHT--------SSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhccCchhHHHHHHHHHHHH--------hccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            57777777766555447778877777677        89999 99999999988753 2357899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh---------CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739          210 AVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE---------GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV  280 (502)
Q Consensus       210 A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~  280 (502)
                      |.+.|++..+..  |+...+..        +...+...         |++++|++.|++..+.. +-+...|..+-.++.
T Consensus       156 A~~~~~~al~~~--p~~~~~~~--------lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~  224 (474)
T 4abn_A          156 AHTCFSGALTHC--KNKVSLQN--------LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYL  224 (474)
T ss_dssp             HHHHHHHHHTTC--CCHHHHHH--------HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC--CCHHHHHH--------HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            999999998765  55333333        44555556         89999999999988752 224566666666666


Q ss_pred             hc-----c--ccHHHHHHHHHHHHHcCCCC----chhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          281 KE-----L--NEFGKALRKLKGYVRAGSIA----ELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       281 ~~-----~--~~~~~a~~~~~~m~~~g~~p----~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      ..     .  +++++|++.|++..+.  .|    +...+. .+-..|.. |++++|.+.|++........  ...+..+-
T Consensus       225 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~a~~~l~  299 (474)
T 4abn_A          225 SLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHL-NRATLHKYEESYGEALEGFSQAAALDPAW--PEPQQREQ  299 (474)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHH
Confidence            54     0  3688888888777543  23    333333 35555666 77777777777766654333  23666666


Q ss_pred             HHHHHcCChHHHHHHHHH
Q 010739          349 AMYICAGRGLEAERQLWE  366 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~  366 (502)
                      ..+...|++++|...+.+
T Consensus       300 ~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          300 QLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            777777777777655443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.76  E-value=4.4e-07  Score=83.53  Aligned_cols=234  Identities=12%  Similarity=-0.012  Sum_probs=123.9

Q ss_pred             hhccHhhHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHH
Q 010739          168 EERGVGDVVDLLVDMDC-------VGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYL  240 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~-------~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~  240 (502)
                      ..|++++|..++++..+       ...+....++..+-..|...|++++|...+++..+..                   
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------   73 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIR-------------------   73 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-------------------
Confidence            45666666666665544       2223346788888899999999999999988776431                   


Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHc------CCCCc-hhchHHHHH
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRA------GSIAE-LDGKNLGLI  313 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~~li  313 (502)
                                       ++...........+|..+-..+... |++++|.+.+.+..+.      .-.|+ ...+. .+.
T Consensus        74 -----------------~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~la  134 (283)
T 3edt_B           74 -----------------EKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN-NLA  134 (283)
T ss_dssp             -----------------HHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-HHH
T ss_pred             -----------------HHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH-HHH
Confidence                             0000000001122344444444444 4555555554444222      11122 12222 344


Q ss_pred             HHHhc-CcHHhHHHHHHHHHHc------CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHH
Q 010739          314 EKYQS-DLLADGSRLSSWAIQE------GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-------GKEADGDLY  379 (502)
Q Consensus       314 ~~~~~-g~~~~a~~~~~~m~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~  379 (502)
                      ..|.. |++++|.+.|++....      ...+....++..+...|.+.|++++|...+++..+.       ...+....+
T Consensus       135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~  214 (283)
T 3edt_B          135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI  214 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence            44555 6666666666555543      123334457777888888888888888888877653       123332222


Q ss_pred             HHHH-HHHHhcCChhHHHHHHHHH---HHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          380 DIVL-AICASQNEGSAVSRLLSRI---EVMNS--LCKKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       380 ~~li-~~~~~~~~~~~a~~l~~~m---~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ...+ ......+....+..+....   ...+.  .....++..+...|.+.|++++|.++|++..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2222 2222222222222221111   11111  11345677789999999999999999998765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.73  E-value=9.6e-07  Score=75.49  Aligned_cols=159  Identities=13%  Similarity=-0.009  Sum_probs=129.3

Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      .+...+.. |++++|.+.|+++....  +.+...|..+...+...|++++|...+++..+.. ..+...+..+...+...
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence            35555777 99999999997765443  2345689999999999999999999999988753 33567788888999999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHH
Q 010739          390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAY  469 (502)
Q Consensus       390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a  469 (502)
                      |++++|.+.++...... ..+...+..+...|...|++++|.+.+++..+.. ..+...+..+...+..    .|+.++|
T Consensus        90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~----~~~~~~A  163 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQ----MGRHEEA  163 (186)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----TTCHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHH----cCCHHHH
Confidence            99999999998887764 3467788889999999999999999999988764 3356777777777776    7999999


Q ss_pred             HHHHhhhhh
Q 010739          470 LNLCKRLSD  478 (502)
Q Consensus       470 ~~~~~~m~~  478 (502)
                      ...++...+
T Consensus       164 ~~~~~~~~~  172 (186)
T 3as5_A          164 LPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.71  E-value=1.2e-06  Score=87.42  Aligned_cols=323  Identities=10%  Similarity=-0.002  Sum_probs=173.6

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccH---hhHHHHHHHHhhCCCCCCHHHHH
Q 010739          119 VLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGV---GDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       119 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +-..+.+.|++ +.|.++|+...+.|.++.  +..+-..+.        ..|+.   ++|..+|++..+.    +...+.
T Consensus         9 la~~~~~~g~~-~~A~~~~~~aa~~g~~~A--~~~Lg~~y~--------~~g~~~d~~~A~~~~~~A~~~----~~~A~~   73 (452)
T 3e4b_A            9 LANEALKRGDT-VTAQQNYQQLAELGYSEA--QVGLADIQV--------GTRDPAQIKQAEATYRAAADT----SPRAQA   73 (452)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHTCCTG--GGTCC----------------------------------------CHH
T ss_pred             HHHHHHhCCCH-HHHHHHHHHHHHCCCHHH--HHHHHHHHH--------ccCCCCCHHHHHHHHHHHHhC----CHHHHH
Confidence            34445566777 688888877777663333  222222222        33444   7777777766543    444455


Q ss_pred             HHHHHHHhcC-----cHHHHHHHHHHHHHcCCCCCCccccc------------------------cCCCCchH--HHHHH
Q 010739          196 KVISLYWEME-----KKERAVLFVKAVLSRGIAYAEGDGEG------------------------QQGGPTGY--LAWKM  244 (502)
Q Consensus       196 ~li~~~~~~g-----~~~~A~~l~~~m~~~~~~p~~~ty~~------------------------~~~~~~~~--~~~~~  244 (502)
                      .|-..+...|     +.++|.+.|++..+.|...  ..++.                        +.+.+...  +...+
T Consensus        74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y  151 (452)
T 3e4b_A           74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY  151 (452)
T ss_dssp             HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5555444444     6777777777776655221  10100                        00000000  11111


Q ss_pred             HHhC----cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccc---cHHHHHHHHHHHHHcCCCCchhchHHHHHHHHh
Q 010739          245 MVEG----KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELN---EFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQ  317 (502)
Q Consensus       245 ~~~g----~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~  317 (502)
                      ...+    ..+++..+++...    ..+...+..+-..|.+. |   +.++|++.|+.-.+.|.......+  .|-.+|.
T Consensus       152 ~~~~~~~~~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~aa~~g~~~a~~~~--~Lg~~y~  224 (452)
T 3e4b_A          152 RTQGTYDQHLDDVERICKAAL----NTTDICYVELATVYQKK-QQPEQQAELLKQMEAGVSRGTVTAQRVD--SVARVLG  224 (452)
T ss_dssp             HHHTCGGGGHHHHHHHHHHHT----TTCTTHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCSCHHHHH--HHHHHHT
T ss_pred             HcCCCcccCHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHh
Confidence            1122    3333333333322    22333667777777777 6   788888888888777643333223  2555554


Q ss_pred             c-----CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          318 S-----DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM-Y--ICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       318 ~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      .     ++.++|.+.|++.. .+.+    ..+..+-.. |  ...++.++|+..|++..+.|   +...+..+-..|. .
T Consensus       225 ~g~~~~~d~~~A~~~~~~aa-~g~~----~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~  295 (452)
T 3e4b_A          225 DATLGTPDEKTAQALLEKIA-PGYP----ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E  295 (452)
T ss_dssp             CGGGSSCCHHHHHHHHHHHG-GGST----HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred             CCCCCCCCHHHHHHHHHHHc-CCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence            4     37888999888876 3322    356556555 3  35889999999999888777   4555555555555 4


Q ss_pred             C-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccc
Q 010739          390 N-----EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRI  460 (502)
Q Consensus       390 ~-----~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~  460 (502)
                      |     +.++|.+.++... .|   +...+..|-..|..    ..+.++|.+.|++..+.|. |+.  ...|-..|..-.
T Consensus       296 G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A--~~~Lg~~y~~G~  368 (452)
T 3e4b_A          296 GKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSA--DFAIAQLFSQGK  368 (452)
T ss_dssp             CSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTH--HHHHHHHHHSCT
T ss_pred             CCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHH--HHHHHHHHHhCC
Confidence            4     8888888887666 33   55666666666665    3488999999999888775 333  223333333322


Q ss_pred             cccccHHHHHHHHhhhhhcCC
Q 010739          461 QQSGNVEAYLNLCKRLSDTSL  481 (502)
Q Consensus       461 ~~~~~~~~a~~~~~~m~~~~~  481 (502)
                      ....+.+.|...++...+.|.
T Consensus       369 g~~~d~~~A~~~~~~A~~~g~  389 (452)
T 3e4b_A          369 GTKPDPLNAYVFSQLAKAQDT  389 (452)
T ss_dssp             TBCCCHHHHHHHHHHHHTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHCCC
Confidence            224588899999888888773

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.66  E-value=4.1e-06  Score=83.54  Aligned_cols=217  Identities=10%  Similarity=-0.085  Sum_probs=145.1

Q ss_pred             HHHHHHHhC---cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-c--ccHHHHHHHHHHHHHcCCCCchhchHHHHH
Q 010739          240 LAWKMMVEG---KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKE-L--NEFGKALRKLKGYVRAGSIAELDGKNLGLI  313 (502)
Q Consensus       240 ~~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~-~--~~~~~a~~~~~~m~~~g~~p~~~~~~~~li  313 (502)
                      +-..+...|   +.++|++.|+.-.+.|. ++...+..+-..|... +  ++.++|++.|+... .|.   ...+. .|-
T Consensus       182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~-~Lg  255 (452)
T 3e4b_A          182 LATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWV-SLA  255 (452)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHH-HHH
T ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHH-HHH
Confidence            344444578   99999999999888764 3444434455555332 1  58999999998876 332   22222 344


Q ss_pred             HH-H--hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010739          314 EK-Y--QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG-----RGLEAERQLWEMKLVGKEADGDLYDIVLA  384 (502)
Q Consensus       314 ~~-~--~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~  384 (502)
                      .. |  .. ++.++|.+.|++....+.    ...+..|-..|. .|     +.++|+..|++.. .   -+...+..+-.
T Consensus       256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~  326 (452)
T 3e4b_A          256 QLLYDFPELGDVEQMMKYLDNGRAADQ----PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQ  326 (452)
T ss_dssp             HHHHHSGGGCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHH
Confidence            44 3  34 999999999999888763    337777777776 55     9999999999876 3   34555555555


Q ss_pred             HHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          385 ICAS----QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       385 ~~~~----~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      .|..    ..+.++|.+.++.....|.   ......|-..|..    ..+.++|...|+...+.|.. +.......+..-
T Consensus       327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~  402 (452)
T 3e4b_A          327 IYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAP  402 (452)
T ss_dssp             HHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTT
T ss_pred             HHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Confidence            5554    3489999999998887773   3445555555654    46899999999999998853 333333233222


Q ss_pred             HccccccccHHHHHHHHhhhhhc
Q 010739          457 RKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       457 ~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      ..    .++++++..+.++....
T Consensus       403 ~~----~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          403 LT----PAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             CC----HHHHHHHHHHHHHHHHH
T ss_pred             CC----HHHHHHHHHHHHHHHHh
Confidence            23    56788888887776543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.66  E-value=1.6e-05  Score=77.10  Aligned_cols=302  Identities=9%  Similarity=-0.079  Sum_probs=179.7

Q ss_pred             HHHHHHH--HHcCCChHHHHHHHHHHHHcC---CCChH--HHHHHHHHHhhhhhhhhhhhccHhhHH---------HHHH
Q 010739          117 QLVLVYF--SQEGRDSWCALEVFEWLKKEN---RVDNE--TMELMVSIMCSWVKKYIEEERGVGDVV---------DLLV  180 (502)
Q Consensus       117 ~~ll~~~--~~~~~~~~~a~~~~~~m~~~~---~~~~~--~~~~li~~~~~~~~~~~~~~~~~~~a~---------~~~~  180 (502)
                      +.+-.+|  .+.++. +.|.++++++.+..   ..|..  .|-.++..-...      -.+.+..+.         ..++
T Consensus        14 ~~l~~wy~~i~~~~~-~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~------~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A           14 VKINEWYKMIRQFSV-PDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQL------MLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHH------HHHTCCC--------CHHHHHH
T ss_pred             HHHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH------HHhhcCcccccccccchHHHHH
Confidence            3334444  677888 89999999987644   23332  334443311100      112222222         5555


Q ss_pred             HHhhCCCCCC--H--HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCC----ccccccCCCCchHHHHHHHHhCcHH
Q 010739          181 DMDCVGLKPG--F--SMIEKVISLYWEMEKKERAVLFVKAVLSRGIA-YAE----GDGEGQQGGPTGYLAWKMMVEGKYV  251 (502)
Q Consensus       181 ~m~~~g~~p~--~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~----~ty~~~~~~~~~~~~~~~~~~g~~~  251 (502)
                      .+.....+.+  .  ..|-..-..+...|++++|...|++..+.--. ++.    ..|..        +...+...|+++
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~--------lg~~y~~~~~~~  158 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFK--------VAEAYYHMKQTH  158 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHH--------HHHHHHHTTCHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHH--------HHHHHHHcCCcH
Confidence            5544221111  1  12223334457899999999999998754211 221    11222        445555679999


Q ss_pred             HHHHHHHHHHHc--CC---CC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHHhc-C
Q 010739          252 DAIKLVIHLRES--GL---KP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKYQS-D  319 (502)
Q Consensus       252 ~a~~~~~~m~~~--g~---~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~~~-g  319 (502)
                      +|+..+++....  ..   .+ ...+++.+-..|... |++++|.+.+++..+.    +-.+. ..++. .+-..|.. |
T Consensus       159 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~lg~~y~~~~  236 (378)
T 3q15_A          159 VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMDIQNDRFIAISLL-NIANSYDRSG  236 (378)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHCC
Confidence            999999887653  11   11 245677788888888 8999999988877332    22111 12232 35555777 9


Q ss_pred             cHHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC
Q 010739          320 LLADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK---EAD-GDLYDIVLAICASQNE  391 (502)
Q Consensus       320 ~~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~li~~~~~~~~  391 (502)
                      ++++|.+.|++....    +.+. ...++..+-..|.+.|++++|...+++..+..-   .|. ...+..+-..+...++
T Consensus       237 ~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~  315 (378)
T 3q15_A          237 DDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD  315 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred             CHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            999999988877662    2222 256788888888889999999999888776422   122 2334444456666666


Q ss_pred             ---hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          392 ---GSAVSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       392 ---~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                         +.+|...++.   .+..|+ ...+..+-..|...|++++|.+.|++..+
T Consensus       316 ~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          316 ERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               5555555544   332232 33455577888888888888888887653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.64  E-value=2.2e-06  Score=68.76  Aligned_cols=124  Identities=14%  Similarity=0.039  Sum_probs=78.3

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN  390 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~  390 (502)
                      +...|.. |++++|.++|+++......  +...|..+...+...|++++|..+++++.... ..+...+..+...+...|
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence            4444555 6666666666666554322  23466666666777777777777777766543 224455666666777777


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          391 EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       391 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ++++|.+.++.+.... ..+...+..+...|.+.|++++|.+.|+++.+
T Consensus        84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            7777777776665543 22455666677777777777777777777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.62  E-value=1.9e-06  Score=86.54  Aligned_cols=218  Identities=13%  Similarity=0.016  Sum_probs=169.0

Q ss_pred             hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccH-HHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHh
Q 010739          247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEF-GKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~  323 (502)
                      .+.+++++..+++.... -..+...+..+-..+... +++ ++|++.|++..+.  .|+ ...+. .+-..|.. |++++
T Consensus        81 ~~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al~~--~p~~~~a~~-~lg~~~~~~g~~~~  155 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKL--EPELVEAWN-QLGEVYWKKGDVTS  155 (474)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhh--CCCCHHHHH-HHHHHHHHcCCHHH
Confidence            45678888888875543 233667788888888888 799 9999999998654  343 34444 57777888 99999


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICA---------GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ-----  389 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----  389 (502)
                      |.+.|++.......   ...|..+-..|.+.         |++++|...|++..+.. .-+...|..+-.++...     
T Consensus       156 A~~~~~~al~~~p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~  231 (474)
T 4abn_A          156 AHTCFSGALTHCKN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG  231 (474)
T ss_dssp             HHHHHHHHHTTCCC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhCCC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence            99999998877522   36888899999999         99999999999988753 22467778888888888     


Q ss_pred             ---CChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcccccc
Q 010739          390 ---NEGSAVSRLLSRIEVMNSL--CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQS  463 (502)
Q Consensus       390 ---~~~~~a~~l~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~  463 (502)
                         |++++|.+.++........  -+...|..+-..|.+.|++++|.+.|++..+..  | +...+..+-..+..    .
T Consensus       232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~----l  305 (474)
T 4abn_A          232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEF----L  305 (474)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH----H
T ss_pred             cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH----H
Confidence               8999999999888776421  378888899999999999999999999988754  4 34456666666655    6


Q ss_pred             ccHHHHHHHHhhhhhc
Q 010739          464 GNVEAYLNLCKRLSDT  479 (502)
Q Consensus       464 ~~~~~a~~~~~~m~~~  479 (502)
                      |+.++|++.+..+...
T Consensus       306 g~~~eAi~~~~~~~~~  321 (474)
T 4abn_A          306 SRLTSLLESKGKTKPK  321 (474)
T ss_dssp             HHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHHhccccCc
Confidence            8899999887766443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.57  E-value=4.2e-06  Score=81.21  Aligned_cols=216  Identities=10%  Similarity=-0.059  Sum_probs=131.5

Q ss_pred             HHhccccHHHHHHHHHHHHHcC-CCCc----hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC--CC---CchHhHHHHH
Q 010739          279 VVKELNEFGKALRKLKGYVRAG-SIAE----LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG--GS---SLYGVVHERL  347 (502)
Q Consensus       279 ~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~--~~---~~~~~~~~~l  347 (502)
                      +... |++++|...+++..+.- -.++    ...+. .+-..|.. |+.+.|...+++.....  ..   .....+++.+
T Consensus       111 ~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~-~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          111 EFDQ-KEYVEAIGYYREAEKELPFVSDDIEKAEFHF-KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHT-TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHH-CCHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            3445 68888888888774321 1122    12232 35555777 88888888887766532  11   1234577788


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHHHH
Q 010739          348 LAMYICAGRGLEAERQLWEMKLV----GKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEV----MNSLCKKKTLSWLL  418 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~----~~~~p~~~~~~~li  418 (502)
                      -..|...|++++|...|++..+.    +-.+ ...+++.+-..+...|++++|.+.++....    .+......++..+-
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  268 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence            88888889999988888876643    1111 123556666788888888888888866544    12222356666788


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHcccccccc---HHHHHHHHhhhhhcCC---chhHHHHH
Q 010739          419 RGYIKGGHINDAAETLTKMLDLGL---YPEYMDRVAVLQGLRKRIQQSGN---VEAYLNLCKRLSDTSL---IGPCLVYL  489 (502)
Q Consensus       419 ~~~~~~g~~~~A~~l~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~~---~~~a~~~~~~m~~~~~---~~~~li~~  489 (502)
                      ..|.+.|+.++|.+.+++..+..-   .|........+......   .++   +.+|+..++.......   ....+-..
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~---~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE---TVDERKIHDLLSYFEKKNLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence            888888999999988888776321   23332222233333221   455   7777777765422111   23346667


Q ss_pred             HHhhcchhhh
Q 010739          490 YIKKYKLWII  499 (502)
Q Consensus       490 y~~~g~~~~~  499 (502)
                      |.+.|+.+.+
T Consensus       346 y~~~g~~~~A  355 (378)
T 3q15_A          346 FESSCHFEQA  355 (378)
T ss_dssp             HHHTTCHHHH
T ss_pred             HHHCCCHHHH
Confidence            7777776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.54  E-value=6.9e-06  Score=65.75  Aligned_cols=129  Identities=13%  Similarity=0.064  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI  422 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~  422 (502)
                      .|..+...+...|++++|..+++++.+.. ..+...+..+...+...|++++|.+.++.+...+ ..+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            67788889999999999999999998754 2356778888889999999999999999887765 336777888999999


Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739          423 KGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       423 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      ..|++++|.+.++++.... ..+...+..+...+..    .|+.++|...++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----HccHHHHHHHHHHHHc
Confidence            9999999999999998754 2356677777788877    7999999999987754

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.52  E-value=0.00056  Score=71.09  Aligned_cols=130  Identities=11%  Similarity=-0.005  Sum_probs=91.6

Q ss_pred             ChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc---HhhHHHHHHHHhhCC-C
Q 010739          112 SARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG---VGDVVDLLVDMDCVG-L  187 (502)
Q Consensus       112 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~---~~~a~~~~~~m~~~g-~  187 (502)
                      +.+.|..++..+.+.+.. +.+..+|+.+...-......|...+..-.        +.++   ++.+..+|+.-.... .
T Consensus        65 d~~~W~~yi~~~~~~~~~-~~aR~vyEraL~~fP~~~~lW~~Yi~~E~--------~~~~~~~~~~v~~lfeRal~~~~~  135 (679)
T 4e6h_A           65 DIFLYVKLLKHHVSLKQW-KQVYETFDKLHDRFPLMANIWCMRLSLEF--------DKMEELDAAVIEPVLARCLSKELG  135 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------TC--CCCHHHHHHHHHHHTCSSSC
T ss_pred             CHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------hhCCcchHHHHHHHHHHHHHhcCC
Confidence            345699999999999999 89999999999887457777877776444        6677   999999999988764 2


Q ss_pred             CCCHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHH-cCC-CCCCccccccCCCCchHHHHHHHH-----------
Q 010739          188 KPGFSMIEKVISLYWEMEKK--------ERAVLFVKAVLS-RGI-AYAEGDGEGQQGGPTGYLAWKMMV-----------  246 (502)
Q Consensus       188 ~p~~~~y~~li~~~~~~g~~--------~~A~~l~~~m~~-~~~-~p~~~ty~~~~~~~~~~~~~~~~~-----------  246 (502)
                      .|++..|...+....+.++.        +.+.++|+...+ .|. .|+.            .-+|....           
T Consensus       136 ~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s------------~~iW~~Yi~f~~~~~~~~~  203 (679)
T 4e6h_A          136 NNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS------------IQFWNEYLHFLEHWKPVNK  203 (679)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSC------------HHHHHHHHHHHHTCCCCSH
T ss_pred             CCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccc------------hHHHHHHHHHHHhccccCc
Confidence            48888999888877776653        345578876553 454 4432            13444332           


Q ss_pred             ---hCcHHHHHHHHHHHHH
Q 010739          247 ---EGKYVDAIKLVIHLRE  262 (502)
Q Consensus       247 ---~g~~~~a~~~~~~m~~  262 (502)
                         +++++.+.++|++...
T Consensus       204 ~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          204 FEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHHHHHHHHHh
Confidence               2456778888887764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.51  E-value=6.6e-06  Score=86.47  Aligned_cols=162  Identities=10%  Similarity=-0.051  Sum_probs=126.9

Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHER  346 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~  346 (502)
                      ..+|+.+-..+.+. |++++|++.|++.++.  .|+. ..++ .+-..|.+ |++++|.+.|++..+.....  ...|+.
T Consensus         9 a~al~nLG~~~~~~-G~~~eAi~~~~kAl~l--~P~~~~a~~-nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a~~n   82 (723)
T 4gyw_A            9 ADSLNNLANIKREQ-GNIEEAVRLYRKALEV--FPEFAAAHS-NLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHH
Confidence            46788888888888 7899999988887554  3443 3333 46677888 99999999998887765433  458888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          347 LLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       347 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                      +-..|.+.|++++|++.|++..+.  .| +...|+.+-..+...|++++|.+.++...+.. .-+...|..+...|...|
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g  159 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVC  159 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcc
Confidence            999999999999999999988764  45 45678888889999999999999998877665 225778888999999999


Q ss_pred             CHHHHHHHHHHHHH
Q 010739          426 HINDAAETLTKMLD  439 (502)
Q Consensus       426 ~~~~A~~l~~~m~~  439 (502)
                      ++++|.+.+++..+
T Consensus       160 ~~~~A~~~~~kal~  173 (723)
T 4gyw_A          160 DWTDYDERMKKLVS  173 (723)
T ss_dssp             CCTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            99988888887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.45  E-value=1.8e-05  Score=73.85  Aligned_cols=210  Identities=12%  Similarity=-0.072  Sum_probs=145.7

Q ss_pred             cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCCc-hhchHHHHHHHHhc-CcHH
Q 010739          249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIAE-LDGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~~li~~~~~-g~~~  322 (502)
                      ++++|.+.|++.               ...|... |++++|...+.+..+    .|-.++ ..+|+ .+-..|.+ |+++
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~-~lg~~~~~~g~~~   94 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYV-EAYKCFKSGGNSV   94 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHCCCHH
Confidence            588888888876               3346667 789999988876632    232222 33444 46677888 9999


Q ss_pred             hHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHc-CChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCh
Q 010739          323 DGSRLSSWAIQEG----GSSLYGVVHERLLAMYICA-GRGLEAERQLWEMKLVG----KEAD-GDLYDIVLAICASQNEG  392 (502)
Q Consensus       323 ~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g----~~p~-~~t~~~li~~~~~~~~~  392 (502)
                      +|...|++.....    .+.....+|+.+-..|... |++++|+..|++..+..    -.+. ..+++.+-..+...|++
T Consensus        95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  174 (292)
T 1qqe_A           95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY  174 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence            9999998776543    2111245788888999996 99999999999876531    1111 35677888999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccc
Q 010739          393 SAVSRLLSRIEVMNSLCKK------KTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEY------MDRVAVLQGLRKRI  460 (502)
Q Consensus       393 ~~a~~l~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~  460 (502)
                      ++|...++...........      ..|..+..+|...|++++|...|++..+.  .|+.      ..+..+..++..  
T Consensus       175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~--  250 (292)
T 1qqe_A          175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNE--  250 (292)
T ss_dssp             HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHc--
Confidence            9999999888776533222      15666788899999999999999997653  3332      134445555541  


Q ss_pred             cccccHHHHHHHHhhhhhc
Q 010739          461 QQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       461 ~~~~~~~~a~~~~~~m~~~  479 (502)
                      ...+++++|+..++.+...
T Consensus       251 ~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          251 GDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             TCTTTHHHHHHHHTTSSCC
T ss_pred             CCHHHHHHHHHHhccCCcc
Confidence            1257799999998776543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.43  E-value=6.6e-06  Score=86.45  Aligned_cols=162  Identities=11%  Similarity=0.018  Sum_probs=124.9

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE  268 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~  268 (502)
                      +..+|+.|-..|.+.|++++|.+.|++..+..  |+. ..|..        +...+...|++++|++.|++..+.  .|+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~n--------Lg~~l~~~g~~~eA~~~~~~Al~l--~P~   75 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSN--------LASVLQQQGKLQEALMHYKEAIRI--SPT   75 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence            35789999999999999999999999888764  442 22222        445555679999999999988765  454


Q ss_pred             -HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739          269 -VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE  345 (502)
Q Consensus       269 -~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~  345 (502)
                       ...|..+-.++.+. |++++|++.+++..+.  .|+. ..++ .+-..|.+ |++++|.+.|++..+.....  ...|.
T Consensus        76 ~~~a~~nLg~~l~~~-g~~~~A~~~~~kAl~l--~P~~~~a~~-~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~--~~a~~  149 (723)
T 4gyw_A           76 FADAYSNMGNTLKEM-QDVQGALQCYTRAIQI--NPAFADAHS-NLASIHKDSGNIPEAIASYRTALKLKPDF--PDAYC  149 (723)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHH
T ss_pred             CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHh
Confidence             67888888899999 7999999999888554  3443 3444 47777888 99999999999888765443  45888


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHH
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      .+...|.+.|++++|.+.+++..+
T Consensus       150 ~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          150 NLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             hhhhHHHhcccHHHHHHHHHHHHH
Confidence            999999999999999888887653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.43  E-value=0.00063  Score=70.72  Aligned_cols=372  Identities=10%  Similarity=-0.021  Sum_probs=191.5

Q ss_pred             ChhhHHHHHHHHHHcCC---ChHHHHHHHHHHHHcC--CCChHHHHHHHHHHhhhhhhhhh-hhccHhhHHHHHHHHh-h
Q 010739          112 SARELQLVLVYFSQEGR---DSWCALEVFEWLKKEN--RVDNETMELMVSIMCSWVKKYIE-EERGVGDVVDLLVDMD-C  184 (502)
Q Consensus       112 ~~~~~~~ll~~~~~~~~---~~~~a~~~~~~m~~~~--~~~~~~~~~li~~~~~~~~~~~~-~~~~~~~a~~~~~~m~-~  184 (502)
                      +...|..-+..-.+.+.   . +.+.++|+......  .|++..|...+.... ....... ..+..+.+.++|+... .
T Consensus        99 ~~~lW~~Yi~~E~~~~~~~~~-~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~-~~~~~~~~~~~~r~~vr~~FErAl~~  176 (679)
T 4e6h_A           99 MANIWCMRLSLEFDKMEELDA-AVIEPVLARCLSKELGNNDLSLWLSYITYVR-KKNDIITGGEEARNIVIQAFQVVVDK  176 (679)
T ss_dssp             CHHHHHHHHHHHHTC--CCCH-HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH-HHSCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCcchH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHH
Confidence            34457778888888888   8 79999999998766  488889988877333 1110000 0112244556777544 3


Q ss_pred             CCC-CCC-HHHHHHHHHHHHh---------cCcHHHHHHHHHHHHHcCCCCCC---ccccc----cCCCCchHHHHHHH-
Q 010739          185 VGL-KPG-FSMIEKVISLYWE---------MEKKERAVLFVKAVLSRGIAYAE---GDGEG----QQGGPTGYLAWKMM-  245 (502)
Q Consensus       185 ~g~-~p~-~~~y~~li~~~~~---------~g~~~~A~~l~~~m~~~~~~p~~---~ty~~----~~~~~~~~~~~~~~-  245 (502)
                      .|. .|+ ...|...+....+         .++++.+.++|+.....   |..   .+|..    +.+. ........+ 
T Consensus       177 vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~-~~~~a~~~~~  252 (679)
T 4e6h_A          177 CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDV-NQLTARRHIG  252 (679)
T ss_dssp             TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHH-CTTTHHHHHH
T ss_pred             hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhc-CcchHHHHHH
Confidence            466 554 5688888876543         45678899999888742   221   11110    0000 000000000 


Q ss_pred             -HhCcHHHHHHHHHHHHHc--CCC---CC--------------------HhHHHHHHHHHHhccc------cHHHHHHHH
Q 010739          246 -VEGKYVDAIKLVIHLRES--GLK---PE--------------------VYSYLIALTAVVKELN------EFGKALRKL  293 (502)
Q Consensus       246 -~~g~~~~a~~~~~~m~~~--g~~---p~--------------------~~ty~~li~~~~~~~~------~~~~a~~~~  293 (502)
                       ...+++.|...+.++...  ++.   |.                    ...|...+.---..+.      ....+..+|
T Consensus       253 e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y  332 (679)
T 4e6h_A          253 ELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY  332 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence             113445555556554432  221   11                    0122222222111110      122344456


Q ss_pred             HHHH-HcCCCCchhchHHHHHHHHhc-CcHHhHH-HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010739          294 KGYV-RAGSIAELDGKNLGLIEKYQS-DLLADGS-RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV  370 (502)
Q Consensus       294 ~~m~-~~g~~p~~~~~~~~li~~~~~-g~~~~a~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  370 (502)
                      ++.+ ..+..  ...| ......+.. |+.++|. ++|++.... +|. +...|-..+...-+.|++++|..+|+++.+.
T Consensus       333 e~aL~~~p~~--~~lW-~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~-s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          333 MQAAQHVCFA--PEIW-FNMANYQGEKNTDSTVITKYLKLGQQC-IPN-SAVLAFSLSEQYELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHHHHHTTTC--HHHH-HHHHHHHHHHSCCTTHHHHHHHHHHHH-CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC--HHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            5553 22222  2222 123444445 7777775 777776643 332 3345666666667778888888888777653


Q ss_pred             C---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh-CCCH
Q 010739          371 G---------KEAD------------GDLYDIVLAICASQNEGSAVSRLLSRIEVM-NSLCKKKTLSWLLRGYIK-GGHI  427 (502)
Q Consensus       371 g---------~~p~------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~~~-~g~~  427 (502)
                      .         -.|+            ...|...+....+.|.++.|..+|+..... +. +....|-..+..-.+ .++.
T Consensus       408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~  486 (679)
T 4e6h_A          408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDT  486 (679)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCH
Confidence            1         0132            234666666666777778888888766554 21 122223222222222 2447


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC-------chhHHHHHHHhhcchhhhh
Q 010739          428 NDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL-------IGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       428 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~li~~y~~~g~~~~~~  500 (502)
                      +.|.++|+..++. +.-+...+...++-...    .|+.+.|..+|+.......       +....+..-.+.|+++.++
T Consensus       487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~----~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~  561 (679)
T 4e6h_A          487 KTACKVLELGLKY-FATDGEYINKYLDFLIY----VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR  561 (679)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred             HHHHHHHHHHHHH-CCCchHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7888888777664 22233334444444444    5677777777776644321       3334444455556665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.38  E-value=4e-05  Score=68.22  Aligned_cols=181  Identities=9%  Similarity=-0.029  Sum_probs=95.0

Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~  322 (502)
                      ...|++++|++.|++.....-.++...+..+-.++.+. +++++|++.+++..+.  .|+. ..+. .+-..|.. |+++
T Consensus        18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~-~l~~~~~~~~~~~   93 (228)
T 4i17_A           18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAIKK--NYNLANAYI-GKSAAYRDMKNNQ   93 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT--TCSHHHHHH-HHHHHHHHTTCHH
T ss_pred             HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHHHh--CcchHHHHH-HHHHHHHHcccHH
Confidence            34577777777777766654335555555566666666 6677777766666443  2332 2222 34455666 7777


Q ss_pred             hHHHHHHHHHHcCCCCchH-----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhH
Q 010739          323 DGSRLSSWAIQEGGSSLYG-----VVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD---GDLYDIVLAICASQNEGSA  394 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~~~~~~  394 (502)
                      +|.+.|++...........     ..|..+-..+.+.|++++|...|++..+  ..|+   ...|..+-..+..     .
T Consensus        94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~~~~~-----~  166 (228)
T 4i17_A           94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGVLFYN-----N  166 (228)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHH-----H
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHH-----H
Confidence            7777776666554333211     2455555666666777777777766654  2444   2233333333322     2


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          395 VSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      +..+++.+...+ ..+...|.....  ...+.+++|...|++..+
T Consensus       167 ~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~  208 (228)
T 4i17_A          167 GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT  208 (228)
T ss_dssp             HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence            233334443333 112333333222  233456666666666554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.37  E-value=2.9e-05  Score=71.93  Aligned_cols=145  Identities=12%  Similarity=-0.017  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHH
Q 010739          253 AIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWA  331 (502)
Q Consensus       253 a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m  331 (502)
                      |+..|++....+ .++..++..+-.++... |+.++|++++++-+..+-.++..-....++..|.+ |+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAIL-GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            555555554443 34444444555555555 56666666665543333211111111134444555 5555555555555


Q ss_pred             HHcCC---CCchHhHHHHHHHHHHH--cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          332 IQEGG---SSLYGVVHERLLAMYIC--AG--RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       332 ~~~~~---~~~~~~~~~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      .....   ...| .+...+..++..  .|  +.++|+.+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+
T Consensus       163 ~~~~~d~~~~~d-~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l  237 (310)
T 3mv2_B          163 TNAIEDTVSGDN-EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL  237 (310)
T ss_dssp             HHHSCHHHHHHH-HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhcCccccccch-HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44311   0001 233333333222  22  555555555555432  233222233333455555555555555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.36  E-value=1.7e-05  Score=70.65  Aligned_cols=195  Identities=9%  Similarity=-0.070  Sum_probs=120.4

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC-C
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP-E  268 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~  268 (502)
                      |...|...-..|.+.|++++|...|++..+..-.++...+..        +...+...|++++|++.|++....  .| +
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~~~~~~~~A~~~~~~al~~--~p~~   75 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYN--------CGVCADNIKKYKEAADYFDIAIKK--NYNL   75 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHT--TCSH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHH--------HHHHHHHhhcHHHHHHHHHHHHHh--Ccch
Confidence            556777777888888888888888888877653233333322        444555568888888888887754  34 3


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh--------chHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCc
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD--------GKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSL  339 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--------~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~  339 (502)
                      ...|..+-..+.+. |++++|...+++..+..  |+..        .|. .+-..+.. |++++|.+.|++.........
T Consensus        76 ~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~-~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  151 (228)
T 4i17_A           76 ANAYIGKSAAYRDM-KNNQEYIATLTEGIKAV--PGNATIEKLYAIYYL-KEGQKFQQAGNIEKAEENYKHATDVTSKKW  151 (228)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHH-HHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence            46677777778888 78888888888775432  3322        222 34444666 888888888887766532200


Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      +...|..+-..|...|+     .+++++...+ ..+...|.....  ...+.+++|...++...+..
T Consensus       152 ~~~~~~~l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence            34467666666655443     3344444332 223444444432  22355777888887776654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.29  E-value=2.5e-05  Score=72.39  Aligned_cols=198  Identities=9%  Similarity=-0.093  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010739          289 ALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEM  367 (502)
Q Consensus       289 a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  367 (502)
                      ++..|++....+ .++..... .+-..+.. |+.++|++++.+.+..+....+...+-.++..+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~-~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELY-LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHH-HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            556666665444 33433332 45566777 9999999999887666543456678999999999999999999999999


Q ss_pred             HHCCCCC-----CHHHHHHHHHH--HHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          368 KLVGKEA-----DGDLYDIVLAI--CAS--QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       368 ~~~g~~p-----~~~t~~~li~~--~~~--~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                      .+.  .|     +..+...+..+  ...  .++...|..+|+++...  .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus       163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            864  56     35666666655  222  33899999999998654  3554444455668999999999999999766


Q ss_pred             HC-----CC---CC-CHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCCchhHHHHHHHhhcchhh
Q 010739          439 DL-----GL---YP-EYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSLIGPCLVYLYIKKYKLWI  498 (502)
Q Consensus       439 ~~-----g~---~p-~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~li~~y~~~g~~~~  498 (502)
                      +.     .-   .| |..++..+|.....    .|+  ++.+++.++.....-.|.+.+.-.+.-.++.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~----lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~  301 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALM----QGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDE  301 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHH----TTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHH----hCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            53     11   24 44555344333322    244  6778888887766345555555555544544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.28  E-value=5.1e-05  Score=71.25  Aligned_cols=216  Identities=11%  Similarity=0.008  Sum_probs=143.3

Q ss_pred             HhCcHHHHHHHHHHHHHc------CCCCCH----hHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCCc-hhchHH
Q 010739          246 VEGKYVDAIKLVIHLRES------GLKPEV----YSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIAE-LDGKNL  310 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~------g~~p~~----~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~  310 (502)
                      ..|++++|.+++++-.+.      ++.++.    ..|+.....|... +++++|...+.+..+    .|-.+. ...|+ 
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~-   80 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNA-KQLEQAKDAYLQEAEAHANNRSLFHAAKAFE-   80 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-
T ss_pred             ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence            357788888888866542      123442    3566667778888 799999998887632    221111 22343 


Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV----GKEA-DGDLYD  380 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~  380 (502)
                      .+...|.+ |++++|...|++.....    .+.....+|+.+-..|.+ |++++|+..|++..+.    |-.+ ...+++
T Consensus        81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~  159 (307)
T 2ifu_A           81 QAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIG  159 (307)
T ss_dssp             HHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            46666888 99999999998766542    222224578888888888 9999999999987643    1111 145677


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 010739          381 IVLAICASQNEGSAVSRLLSRIEVM----NSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE------YMDR  449 (502)
Q Consensus       381 ~li~~~~~~~~~~~a~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~  449 (502)
                      .+-..+...|++++|.+.++.....    +..++ ...+..+...+...|++++|...|++.. .  .|+      ....
T Consensus       160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l  236 (307)
T 2ifu_A          160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAAL  236 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHH
Confidence            7888999999999999999766543    21111 2255556777778899999999999987 3  332      1234


Q ss_pred             HHHHHHHHccccccccHHHHHHH
Q 010739          450 VAVLQGLRKRIQQSGNVEAYLNL  472 (502)
Q Consensus       450 ~~ll~~~~~~~~~~~~~~~a~~~  472 (502)
                      ..++.++.     .|+.+.+..+
T Consensus       237 ~~l~~~~~-----~~d~~~~~~~  254 (307)
T 2ifu_A          237 EDLLQAYD-----EQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHH-----TTCHHHHHHH
T ss_pred             HHHHHHHH-----hcCHHHHHHH
Confidence            45555553     4666666553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.17  E-value=8e-05  Score=69.30  Aligned_cols=174  Identities=10%  Similarity=-0.044  Sum_probs=126.8

Q ss_pred             cHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHH
Q 010739          285 EFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLE  359 (502)
Q Consensus       285 ~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~  359 (502)
                      ++++|...+++.                ...|.. |++++|.+.|.+....    +.+.....+|+.+-..|.+.|++++
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~   95 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            588888877664                334666 9999999999877654    2222235689999999999999999


Q ss_pred             HHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhCCCHH
Q 010739          360 AERQLWEMKLV----GKEA-DGDLYDIVLAICASQ-NEGSAVSRLLSRIEVMNSL-CK----KKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       360 A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~-~~~~~a~~l~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~  428 (502)
                      |...|++..+.    |-.. -..+++.+-..+... |++++|.+.++........ .+    ..++..+...|.+.|+++
T Consensus        96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  175 (292)
T 1qqe_A           96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence            99999987653    2111 134677777889986 9999999999766543211 11    346778899999999999


Q ss_pred             HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739          429 DAAETLTKMLDLGLYPEY------MDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       429 ~A~~l~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      +|.+.|++..+.......      ..|..+-..+..    .|+.++|...+++...
T Consensus       176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            999999999886533222      134555555555    6999999999988754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.13  E-value=0.00014  Score=66.15  Aligned_cols=99  Identities=15%  Similarity=0.108  Sum_probs=60.2

Q ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC----ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739          190 GFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE----GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL  265 (502)
Q Consensus       190 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~  265 (502)
                      +...+-.+-..+.+.|++++|...|++..+..  |+.    ..+..        +...+...|++++|+..|++.....-
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------lg~~~~~~~~~~~A~~~~~~~l~~~p   83 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFY--------LARAYYQNKEYLLAASEYERFIQIYQ   83 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHH--------HHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence            44556666667777788888888887776654  221    11111        34445556788888888887776521


Q ss_pred             -CCC-HhHHHHHHHHHHh--------ccccHHHHHHHHHHHHHc
Q 010739          266 -KPE-VYSYLIALTAVVK--------ELNEFGKALRKLKGYVRA  299 (502)
Q Consensus       266 -~p~-~~ty~~li~~~~~--------~~~~~~~a~~~~~~m~~~  299 (502)
                       .|. ...+..+-.++.+        . |++++|...|++..+.
T Consensus        84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           84 IDPRVPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHHH
Confidence             112 3445555556666        6 6788888888777443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.12  E-value=6.3e-05  Score=70.58  Aligned_cols=228  Identities=8%  Similarity=-0.044  Sum_probs=137.6

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE-MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV  246 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~  246 (502)
                      ..|++++|..++++..+..- ..          +.+ .+++++|...|++.                       ...+..
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a-----------------------~~~~~~   48 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA-----------------------AVAFKN   48 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH-----------------------HHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH-----------------------HHHHHH
Confidence            45788888888887655311 11          112 46677777776654                       222334


Q ss_pred             hCcHHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHc----CCCCc-hhchHHHHHHHH
Q 010739          247 EGKYVDAIKLVIHLRES----GLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRA----GSIAE-LDGKNLGLIEKY  316 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~----g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~~li~~~  316 (502)
                      .|++++|.+.|.+....    |-.+. ..+|+.+...|.+. +++++|+..+++-.+.    |-... ..+++ .+-..|
T Consensus        49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~-~lg~~~  126 (307)
T 2ifu_A           49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYVENGTPDTAAMALD-RAGKLM  126 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHH
Confidence            57777777777665443    11111 34677777778777 6888888877765322    21111 12222 244445


Q ss_pred             hcCcHHhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHH
Q 010739          317 QSDLLADGSRLSSWAIQEG----GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV----GKEADG-DLYDIVLAICA  387 (502)
Q Consensus       317 ~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~li~~~~  387 (502)
                      ..|++++|.+.|++.....    .+.....+|+.+-..|.+.|++++|...|++..+.    +..+.. ..+..+...+.
T Consensus       127 ~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          127 EPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence            4489999999887766532    11112357888889999999999999999987753    222222 25555566777


Q ss_pred             hcCChhHHHHHHHHHHHcCC-CCCH---HHHHHHHHHHHhCCCHHHHHHH
Q 010739          388 SQNEGSAVSRLLSRIEVMNS-LCKK---KTLSWLLRGYIKGGHINDAAET  433 (502)
Q Consensus       388 ~~~~~~~a~~l~~~m~~~~~-~p~~---~~~~~li~~~~~~g~~~~A~~l  433 (502)
                      ..|++++|...++... ... .++.   .....++.+| ..|+.+.+.++
T Consensus       207 ~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          207 HRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            7799999999998876 321 1111   1233355555 56777766653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.11  E-value=0.00026  Score=65.75  Aligned_cols=162  Identities=6%  Similarity=-0.108  Sum_probs=102.0

Q ss_pred             HHHHHhccccHHHHHHHHHHHHHc-CCCCchh---chHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch----HhHHHH
Q 010739          276 LTAVVKELNEFGKALRKLKGYVRA-GSIAELD---GKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY----GVVHER  346 (502)
Q Consensus       276 i~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~---~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~----~~~~~~  346 (502)
                      +..+.+. +++++|.+.+++..+. ...|+..   .|...+...|.. |++++|...|++.........+    ..+|+.
T Consensus        82 i~~~~~~-~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           82 VIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHH-hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            5556666 6788888887777442 2223321   111123444555 7888888888877764332222    236788


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHH
Q 010739          347 LLAMYICAGRGLEAERQLWEMKLV-----GKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEV----MNSLCK-KKTLS  415 (502)
Q Consensus       347 li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~----~~~~p~-~~~~~  415 (502)
                      +-..|...|++++|...|++..+.     +..+. ..+|..+-..|...|++++|.+.++....    .+..+. ...|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888888888888888888887631     22222 23566666788888888888887754432    222222 55677


Q ss_pred             HHHHHHHhCCC-HHHHHHHHHHHH
Q 010739          416 WLLRGYIKGGH-INDAAETLTKML  438 (502)
Q Consensus       416 ~li~~~~~~g~-~~~A~~l~~~m~  438 (502)
                      .+-..|.+.|+ .++|.+.|++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            77778888884 588888777754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.08  E-value=0.00051  Score=60.95  Aligned_cols=56  Identities=11%  Similarity=0.036  Sum_probs=27.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 010739          348 LAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVM  405 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~  405 (502)
                      -..|.+.|++++|...|+++.+.  .|+.    ..+..+..++.+.|+.++|.+.++.+...
T Consensus       154 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          154 AEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence            33445555555555555555543  1221    23444445555555555555555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.08  E-value=0.00043  Score=64.24  Aligned_cols=208  Identities=8%  Similarity=-0.097  Sum_probs=132.6

Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHH--HHHHHHhc-CcHHhHHHHHHHH
Q 010739          255 KLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNL--GLIEKYQS-DLLADGSRLSSWA  331 (502)
Q Consensus       255 ~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--~li~~~~~-g~~~~a~~~~~~m  331 (502)
                      ..+..+......|+..+...+...+.-.   ++.       +.......+......  ..+..+.. |++++|.+++++.
T Consensus        32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~---~~~-------~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~  101 (293)
T 3u3w_A           32 SEVSRIESGAVYPSMDILQGIAAKLQIP---IIH-------FYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE  101 (293)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHHHHHTCC---THH-------HHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHhCcC---HHH-------HhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3455555555678877776666665444   222       111111222222211  12444556 9999999999998


Q ss_pred             HHcCCCCchH----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          332 IQEGGSSLYG----VVHERLLAMYICAGRGLEAERQLWEMKLVGKE-AD----GDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       332 ~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      .......++.    ..+..+...+...|++++|...|++..+.... ++    ..+|+.+-..|...|+++.|.+.++..
T Consensus       102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  181 (293)
T 3u3w_A          102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI  181 (293)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7755433332    13334666666678999999999999874322 23    336888888999999999999999766


Q ss_pred             HH----c-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccccccc-cHHHHH
Q 010739          403 EV----M-NSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD----LGLYPE-YMDRVAVLQGLRKRIQQSG-NVEAYL  470 (502)
Q Consensus       403 ~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~~~~~~~~~~~-~~~~a~  470 (502)
                      ..    . +..+. ..+|..+...|.+.|++++|.+.+++.++    .+-.+. ..+|..+-..+.+    .| ..++|.
T Consensus       182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~~A~  257 (293)
T 3u3w_A          182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIE  257 (293)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH----TTCCHHHHH
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----hCCcHHHHH
Confidence            53    2 22222 33677799999999999999999998764    333333 4556666556655    45 457777


Q ss_pred             HHHhhh
Q 010739          471 NLCKRL  476 (502)
Q Consensus       471 ~~~~~m  476 (502)
                      ..+++.
T Consensus       258 ~~~~~A  263 (293)
T 3u3w_A          258 DAYKKA  263 (293)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.06  E-value=0.00042  Score=62.97  Aligned_cols=167  Identities=11%  Similarity=-0.030  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHcC-CCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCC-CCchHhHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGYVRAG-SIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGG-SSLYGVVHE  345 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~-~~~~~~~~~  345 (502)
                      ..+-..-..+.+. |++++|...|++..+.. -.|. ...+. .+-..|.+ |++++|...|++...... .+.....+.
T Consensus        16 ~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~-~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           16 QEAFERAMEFYNQ-GKYDRAIEYFKAVFTYGRTHEWAADAQF-YLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHGGGCSCSTTHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCCcchHHHHH-HHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            3444444555555 56777777776664332 1111 11221 24444555 777777777776666542 122234555


Q ss_pred             HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHH-----------------HHHHHHHHhcCChhHHHHHH
Q 010739          346 RLLAMYIC--------AGRGLEAERQLWEMKLVGKEADG-DLY-----------------DIVLAICASQNEGSAVSRLL  399 (502)
Q Consensus       346 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~-----------------~~li~~~~~~~~~~~a~~l~  399 (502)
                      .+-.++.+        .|++++|...|++..+..  |+. ...                 ..+-..+...|++++|...+
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            56666666        777777777777776542  321 111                 22234556666666666666


Q ss_pred             HHHHHcCCC-C-CHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHC
Q 010739          400 SRIEVMNSL-C-KKKTLSWLLRGYIKG----------GHINDAAETLTKMLDL  440 (502)
Q Consensus       400 ~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~  440 (502)
                      +........ + ....+..+..+|...          |++++|...|++..+.
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            655443211 1 123444455555544          6666666666666553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.02  E-value=0.00082  Score=59.60  Aligned_cols=55  Identities=18%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             HHHHhCcHHHHHHHHHHHHHcCC-CCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHH
Q 010739          243 KMMVEGKYVDAIKLVIHLRESGL-KPE-VYSYLIALTAVVKELNEFGKALRKLKGYVR  298 (502)
Q Consensus       243 ~~~~~g~~~~a~~~~~~m~~~g~-~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~  298 (502)
                      .+...|++++|++.|+++....- .|. ...+..+..++.+. |++++|+..|++..+
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~   69 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIR   69 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence            34446777777777777765421 111 23555566666666 677777777777643

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.99  E-value=0.00047  Score=60.41  Aligned_cols=129  Identities=15%  Similarity=0.053  Sum_probs=84.1

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQ  389 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~  389 (502)
                      +-..|.+ |++++|...|++........  ...|..+-..|...|++++|...|++..+.  .|+ ...|..+-..+...
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNN--VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            5555777 89999999888877765433  458888888899999999999999988764  453 45566555555544


Q ss_pred             CCh--hHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010739          390 NEG--SAVSRLLSRIEVMNSLCKKKTL--SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRV  450 (502)
Q Consensus       390 ~~~--~~a~~l~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  450 (502)
                      |..  ..+...++..    ..|+...+  ...-.++...|++++|...|++.++  +.|+.....
T Consensus       136 ~~~~~~~~~~~~~~~----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~  194 (208)
T 3urz_A          136 AEQEKKKLETDYKKL----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK  194 (208)
T ss_dssp             HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred             hHHHHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence            432  2333333332    23443333  3344455667899999999998775  457765433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.98  E-value=0.00026  Score=74.36  Aligned_cols=189  Identities=11%  Similarity=-0.042  Sum_probs=137.1

Q ss_pred             HhccccHHHHHHHHHHHHH------cCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHH
Q 010739          280 VKELNEFGKALRKLKGYVR------AGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYI  352 (502)
Q Consensus       280 ~~~~~~~~~a~~~~~~m~~------~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  352 (502)
                      ... +++++|++.+++...      ....|+.......+-..|.. |++++|.+.|++........  ...|..+-..|.
T Consensus       402 ~~~-~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVL-SQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--WRLVWYRAVAEL  478 (681)
T ss_dssp             TTT-CCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
T ss_pred             ccc-cCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--HHHHHHHHHHHH
Confidence            445 789999999988761      12345443322245566777 99999999999988765444  458888999999


Q ss_pred             HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 010739          353 CAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAA  431 (502)
Q Consensus       353 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  431 (502)
                      +.|++++|...|++..+.  .| +...|..+-.++...|++++ .+.++.....+ .-+...|..+-..|.+.|++++|.
T Consensus       479 ~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999998864  34 45677777789999999999 99998887765 236778888999999999999999


Q ss_pred             HHHHHHHHCCCCCCH-HHHHHHHHHHHccc--cc--cccHHHHHHHHhhhh
Q 010739          432 ETLTKMLDLGLYPEY-MDRVAVLQGLRKRI--QQ--SGNVEAYLNLCKRLS  477 (502)
Q Consensus       432 ~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~--~~--~~~~~~a~~~~~~m~  477 (502)
                      +.|++..+  +.|+. ..+..+..++...-  ..  .+++++|.+.+..+.
T Consensus       555 ~~~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          555 RTLDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99998654  45664 34555555543300  00  145777777776664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.98  E-value=9.3e-05  Score=68.70  Aligned_cols=164  Identities=9%  Similarity=0.016  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC
Q 010739          188 KPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK  266 (502)
Q Consensus       188 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~  266 (502)
                      +.+...+..+-..+.+.|++++|...|++..+..  |+.. .+..        +...+...|++++|...+++....  .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~--------la~~~~~~g~~~~A~~~l~~~~~~--~  181 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLL--------LAETLIALNRSEDAEAVLXTIPLQ--D  181 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHH--------HHHHHHHTTCHHHHHHHHTTSCGG--G
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHH--------HHHHHHHCCCHHHHHHHHHhCchh--h
Confidence            3445566677777788888888888888877654  3211 1111        333444467777777777665443  3


Q ss_pred             CCHhHHHHHHH-HHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHH
Q 010739          267 PEVYSYLIALT-AVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVH  344 (502)
Q Consensus       267 p~~~ty~~li~-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~  344 (502)
                      |+......... .+.+. ++.++|...+++....  .|+.......+-..|.. |++++|...|.++........+...+
T Consensus       182 p~~~~~~~~~~~~l~~~-~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQ-AADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             CSHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             cchHHHHHHHHHHHHhh-cccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence            44332222111 23333 3455555555555332  23322221234455555 66666666666655554333233456


Q ss_pred             HHHHHHHHHcCChHHHHHHHHH
Q 010739          345 ERLLAMYICAGRGLEAERQLWE  366 (502)
Q Consensus       345 ~~li~~~~~~g~~~~A~~l~~~  366 (502)
                      ..+...|...|+.++|...|++
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHH
Confidence            6666666666666666655554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.97  E-value=0.00018  Score=73.79  Aligned_cols=151  Identities=9%  Similarity=-0.060  Sum_probs=99.7

Q ss_pred             hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHh
Q 010739          247 EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~  323 (502)
                      .|++++|++.|++..+.  .|+ ...|..+-..+.+. |++++|.+.+++..+.  .|+. ..+. .+-..|.. |++++
T Consensus         2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~-~lg~~~~~~g~~~~   75 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLAL--HPGHPEAVA-RLGRVRWTQQRHAE   75 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTT--STTCHHHHH-HHHHHHHHTTCHHH
T ss_pred             CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHCCCHHH
Confidence            47888999999887654  443 67778888888888 7899999988887554  3433 3333 46666777 99999


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHH
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ---NEGSAVSRLLS  400 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---~~~~~a~~l~~  400 (502)
                      |.+.|++.......  +...|..+-..|.+.|++++|.+.|++..+.. .-+...+..+...+...   |+.++|.+.++
T Consensus        76 A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~  152 (568)
T 2vsy_A           76 AAVLLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVR  152 (568)
T ss_dssp             HHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            99999888776533  34588888888999999999999999887653 22456777777888888   88889988888


Q ss_pred             HHHHcC
Q 010739          401 RIEVMN  406 (502)
Q Consensus       401 ~m~~~~  406 (502)
                      .....+
T Consensus       153 ~al~~~  158 (568)
T 2vsy_A          153 AAVAQG  158 (568)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            777665

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.97  E-value=8.5e-05  Score=63.23  Aligned_cols=156  Identities=15%  Similarity=0.026  Sum_probs=97.2

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhc
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI-CASQ  389 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~  389 (502)
                      +...+.. |++++|...|++......  .+...|..+-..+.+.|++++|...|++....  .|+...+...... +...
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDELQ--SRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHHH--TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence            3344555 888888887766544332  23347777888888888888888888876543  3333322221111 1222


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccccccccHHH
Q 010739          390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQSGNVEA  468 (502)
Q Consensus       390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~  468 (502)
                      +....+.+.++...... .-+...+..+-..+...|++++|...|++..+..-.+ +...+..+...+..    .|+.++
T Consensus        88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~  162 (176)
T 2r5s_A           88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNA  162 (176)
T ss_dssp             HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCH
T ss_pred             cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCc
Confidence            23334566666665543 2256777778888888888888888888887765332 34566666666665    577777


Q ss_pred             HHHHHhhh
Q 010739          469 YLNLCKRL  476 (502)
Q Consensus       469 a~~~~~~m  476 (502)
                      |...++..
T Consensus       163 A~~~y~~a  170 (176)
T 2r5s_A          163 IASKYRRQ  170 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.96  E-value=0.00025  Score=65.79  Aligned_cols=151  Identities=19%  Similarity=0.082  Sum_probs=81.4

Q ss_pred             Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChh
Q 010739          316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVL-AICASQNEGS  393 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~~~~~~  393 (502)
                      +.. |++++|...|++.........  ..+..+...|.+.|++++|...+++....  .|+........ ..+...++.+
T Consensus       127 ~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~  202 (287)
T 3qou_A          127 LMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT  202 (287)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence            444 666666666655554433332  35666666666666666666666655432  34433222222 2344555555


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccccccccHHHHHHH
Q 010739          394 AVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLY-PEYMDRVAVLQGLRKRIQQSGNVEAYLNL  472 (502)
Q Consensus       394 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~~~~~a~~~  472 (502)
                      .|.+.++...... ..+...+..+-..|...|++++|...|++.....-. .+...+..+...+..    .|+.++|...
T Consensus       203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~a~~~  277 (287)
T 3qou_A          203 PEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA----LGTGDALASX  277 (287)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH----HCTTCHHHHH
T ss_pred             ccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH----cCCCCcHHHH
Confidence            5666665555443 224556666666666777777777777766654321 123455555555544    4555555555


Q ss_pred             Hhh
Q 010739          473 CKR  475 (502)
Q Consensus       473 ~~~  475 (502)
                      +++
T Consensus       278 ~r~  280 (287)
T 3qou_A          278 YRR  280 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.96  E-value=0.00022  Score=73.20  Aligned_cols=151  Identities=11%  Similarity=-0.027  Sum_probs=106.4

Q ss_pred             ccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHH
Q 010739          284 NEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAE  361 (502)
Q Consensus       284 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  361 (502)
                      ++.++|.+.+++..+.  .|+ ...+. .+-..|.. |++++|.+.|++.......  +...|..+-..|.+.|++++|.
T Consensus         3 g~~~~A~~~~~~al~~--~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRH--RPQDFVAWL-MLADAELGMGDTTAGEMAVQRGLALHPG--HPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             --------------------CCHHHHH-HHHHHHHHHTCHHHHHHHHHHHHTTSTT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHH
Confidence            5788998888877443  344 33333 46666777 9999999999988776533  3458888999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Q 010739          362 RQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG---GHINDAAETLTKML  438 (502)
Q Consensus       362 ~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~  438 (502)
                      ..|++..+.. .-+...+..+-.++...|++++|.+.++...... ..+...+..+...+...   |+.++|.+.+++..
T Consensus        78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            9999988653 2246778888889999999999999998887765 23577788889999999   99999999999988


Q ss_pred             HCC
Q 010739          439 DLG  441 (502)
Q Consensus       439 ~~g  441 (502)
                      +.+
T Consensus       156 ~~~  158 (568)
T 2vsy_A          156 AQG  158 (568)
T ss_dssp             HHT
T ss_pred             hcC
Confidence            765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.92  E-value=0.00075  Score=59.31  Aligned_cols=176  Identities=15%  Similarity=0.048  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcC----cHHhHHHH
Q 010739          252 DAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSD----LLADGSRL  327 (502)
Q Consensus       252 ~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g----~~~~a~~~  327 (502)
                      +|++.|++..+.|   +...+..+-..+... ++.++|++.|++..+.|.   ...+. .|-..|..+    +.++|.+.
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~g~---~~a~~-~lg~~y~~~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQGD---GDALA-LLAQLKIRNPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTTC---HHHHH-HHHHHTTSSTTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCC---HHHHH-HHHHHHHcCCCCCCHHHHHHH
Confidence            3445555554442   344445555555555 566666666666655442   12221 233333333    56666666


Q ss_pred             HHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhHHHHH
Q 010739          328 SSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKE-ADGDLYDIVLAICAS----QNEGSAVSRL  398 (502)
Q Consensus       328 ~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~~~~~~a~~l  398 (502)
                      |++..+.+.+    ..+..|-..|..    .+++++|+..|++..+.|.. -+...+..|-..|..    .++.++|.+.
T Consensus        76 ~~~A~~~g~~----~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           76 AEKAVEAGSK----SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHHHTTCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHHHCCCH----HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            6655544322    244444444444    55566666666655544321 013334444444444    4455555555


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHCC
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKG-G-----HINDAAETLTKMLDLG  441 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g  441 (502)
                      ++.....+  .+...+..|-..|... |     +.++|.+.|++..+.|
T Consensus       152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            55544431  1222333444444332 1     5555555555554444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.92  E-value=0.00019  Score=75.40  Aligned_cols=171  Identities=12%  Similarity=-0.052  Sum_probs=129.0

Q ss_pred             HHhCcHHHHHHHHHHHHH------cCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHH
Q 010739          245 MVEGKYVDAIKLVIHLRE------SGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKY  316 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~------~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~  316 (502)
                      ...|++++|++.|++...      ....| +...+..+-.++.+. |++++|.+.+++..+.  .|+ ...+. .+-..|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~--~p~~~~a~~-~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL-GDVAKATRKLDDLAER--VGWRWRLVW-YRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH--HCCCHHHHH-HHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhcc--CcchHHHHH-HHHHHH
Confidence            456999999999999871      12334 456778888888899 8999999999998554  233 33333 455667


Q ss_pred             hc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhH
Q 010739          317 QS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSA  394 (502)
Q Consensus       317 ~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~  394 (502)
                      .. |++++|.+.|++.........+  .|..+-..|.+.|++++ ...|++..+.  .| +...|..+-.++...|++++
T Consensus       478 ~~~g~~~~A~~~~~~al~l~P~~~~--~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTFPGELA--PKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCSH--HHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHH
Confidence            77 9999999999998887655544  88999999999999999 9999998864  34 45678888899999999999


Q ss_pred             HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCC
Q 010739          395 VSRLLSRIEVMNSLCK-KKTLSWLLRGYIKGGH  426 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~  426 (502)
                      |.+.++.....+  |+ ...+..+..++...|+
T Consensus       553 A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          553 AVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred             HHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence            999998776554  54 5566667777666554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.91  E-value=0.00072  Score=62.70  Aligned_cols=165  Identities=5%  Similarity=-0.115  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHcCCC-Cch----hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCC----chH
Q 010739          272 YLIALTAVVKELNEFGKALRKLKGYVRAGSI-AEL----DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSS----LYG  341 (502)
Q Consensus       272 y~~li~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~----~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~----~~~  341 (502)
                      +...+..+... +++++|.+.+.+..+..-. ++.    ..+. .+...|.. |++++|...+++........    ...
T Consensus        78 l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           78 FKDQVIMLCKQ-KRYKEIYNKVWNELKKEEYHPEFQQFLQWQY-YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHh-hhHHHHHHHHHHHhccccCChhHHHHHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            33455566667 6788888877766443222 111    1111 23334556 78888888888776543211    113


Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCC-C
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLV-GKEAD-----GDLYDIVLAICASQNEGSAVSRLLSRIEVMN----SLC-K  410 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~----~~p-~  410 (502)
                      .+|+.+-..|...|++++|...|++..+. ...|+     ..+|+.+-..|...|++++|.+.++......    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            47888888888999999999999887632 11122     2477777788889999999998886554322    111 1


Q ss_pred             HHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 010739          411 KKTLSWLLRGYIKGGHINDA-AETLTKML  438 (502)
Q Consensus       411 ~~~~~~li~~~~~~g~~~~A-~~l~~~m~  438 (502)
                      ..+|..+-..|.+.|+.++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            55677788888899999999 77677654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.91  E-value=0.00015  Score=61.68  Aligned_cols=151  Identities=17%  Similarity=0.192  Sum_probs=80.3

Q ss_pred             HHHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHH-H-Hhc
Q 010739          242 WKMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIE-K-YQS  318 (502)
Q Consensus       242 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~-~-~~~  318 (502)
                      ..+...|++++|+..|++..+.  .| +...+..+-..+.+. |++++|...++.....  .|+...+.  +.. . +..
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~~~--~p~~~~~~--~~~~~~~~~   86 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLET-KQFELAQELLATIPLE--YQDNSYKS--LIAKLELHQ   86 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCCGG--GCCHHHHH--HHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhhhc--cCChHHHH--HHHHHHHHh
Confidence            3445567888888777765543  23 345666666777777 6778887777665322  12222211  111 1 111


Q ss_pred             -CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHH
Q 010739          319 -DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVS  396 (502)
Q Consensus       319 -g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~  396 (502)
                       +...+|...|++.......  +...+..+-..+.+.|++++|...|++..+..-.+ +...+..+...+...|+.++|.
T Consensus        87 ~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence             2223355555555544322  23356666666666666666666666665432211 2345555555666666666655


Q ss_pred             HHHHH
Q 010739          397 RLLSR  401 (502)
Q Consensus       397 ~l~~~  401 (502)
                      ..++.
T Consensus       165 ~~y~~  169 (176)
T 2r5s_A          165 SKYRR  169 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.88  E-value=0.00044  Score=54.08  Aligned_cols=99  Identities=15%  Similarity=0.075  Sum_probs=72.4

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010739          341 GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRG  420 (502)
Q Consensus       341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~  420 (502)
                      ...|..+...+.+.|++++|..+|+++.+.. ..+...+..+...+...|++++|...++.+.... ..+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4567777777888888888888888877542 2345666777777788888888888887776654 2356677778888


Q ss_pred             HHhCCCHHHHHHHHHHHHHCC
Q 010739          421 YIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       421 ~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      |...|++++|.+.|+++.+..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhC
Confidence            888888888888888877643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.85  E-value=0.002  Score=56.50  Aligned_cols=181  Identities=10%  Similarity=-0.035  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC----ChHHHH
Q 010739          287 GKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG----RGLEAE  361 (502)
Q Consensus       287 ~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~  361 (502)
                      .+|++.|++..+.|   +...+. .|-..|.. ++.++|.+.|++..+.+.+    ..+..|-..|.. +    +.++|+
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~-~lg~~~~~~~~~~~A~~~~~~a~~~g~~----~a~~~lg~~y~~-~g~~~~~~~A~   73 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQY-YLADTWVSSGDYQKAEYWAQKAAAQGDG----DALALLAQLKIR-NPQQADYPQAR   73 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHTTCH----HHHHHHHHHTTS-STTSCCHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHc-CCCCCCHHHHH
Confidence            34666677766554   233332 36666777 9999999999998887533    367777777777 6    899999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----CCCHHHHHH
Q 010739          362 RQLWEMKLVGKEADGDLYDIVLAICAS----QNEGSAVSRLLSRIEVMNSL-CKKKTLSWLLRGYIK----GGHINDAAE  432 (502)
Q Consensus       362 ~l~~~m~~~g~~p~~~t~~~li~~~~~----~~~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~  432 (502)
                      ..|++..+.|   +...+..+-..+..    .++.++|.+.++.....+.. .+...+..|-..|..    .++.++|.+
T Consensus        74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~  150 (212)
T 3rjv_A           74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE  150 (212)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            9999998766   45566666666665    78999999999988876621 126777778888888    889999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHcccc--ccccHHHHHHHHhhhhhcCC
Q 010739          433 TLTKMLDLGLYPEYMDRVAVLQGLRKRIQ--QSGNVEAYLNLCKRLSDTSL  481 (502)
Q Consensus       433 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~~~~~a~~~~~~m~~~~~  481 (502)
                      .|++..+.+  .+...+..|-..+..-..  ...+.++|...++...+.|.
T Consensus       151 ~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          151 YFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999998872  223344445445543100  12389999999999888873

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.84  E-value=0.0056  Score=56.92  Aligned_cols=149  Identities=13%  Similarity=0.056  Sum_probs=95.6

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc--cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH-
Q 010739          125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER--GVGDVVDLLVDMDCVGLKPGFSMIEKVISLY-  201 (502)
Q Consensus       125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~-  201 (502)
                      +.|..+++|+++++.+.....-+...|+.--..+.        ..+  .+++++.+++.+....-+ +..+|+.--..+ 
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~--------~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~  114 (306)
T 3dra_A           44 KAEEYSERALHITELGINELASHYTIWIYRFNILK--------NLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIG  114 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------TCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH--------HcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHH
Confidence            34444489999999999888446667776655444        555  999999999998875332 445666544444 


Q ss_pred             ---Hhc---CcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hCcHH--HHHHHHHHHHHcCCCCC
Q 010739          202 ---WEM---EKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EGKYV--DAIKLVIHLRESGLKPE  268 (502)
Q Consensus       202 ---~~~---g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g~~~--~a~~~~~~m~~~g~~p~  268 (502)
                         .+.   ++++++.++++.+.+.+              +.++.+|.+-.     -|.++  ++++.++++.+... -|
T Consensus       115 ~~~~~l~~~~~~~~EL~~~~~~l~~~--------------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N  179 (306)
T 3dra_A          115 QIMELNNNDFDPYREFDILEAMLSSD--------------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KN  179 (306)
T ss_dssp             HHHHHTTTCCCTHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TC
T ss_pred             HHHHhccccCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CC
Confidence               444   78899999999998766              23345555443     36666  78888888876532 24


Q ss_pred             HhHHHHHHHHHHhcccc------HHHHHHHHHHHHH
Q 010739          269 VYSYLIALTAVVKELNE------FGKALRKLKGYVR  298 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~------~~~a~~~~~~m~~  298 (502)
                      -..|+.--..+.+. +.      ++++++.++..+.
T Consensus       180 ~sAW~~R~~ll~~l-~~~~~~~~~~eEl~~~~~aI~  214 (306)
T 3dra_A          180 NSAWSHRFFLLFSK-KHLATDNTIDEELNYVKDKIV  214 (306)
T ss_dssp             HHHHHHHHHHHHSS-GGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cccchhhhHHHHHHHHHHHHH
Confidence            44555444444444 33      5555555555533

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.84  E-value=0.0011  Score=57.93  Aligned_cols=123  Identities=10%  Similarity=-0.101  Sum_probs=89.0

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-C
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-D  319 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g  319 (502)
                      ...+...|++++|++.|++.    +.|+...|..+-..+.+. |++++|...+++..+.. ..+...+. .+-..|.. |
T Consensus        13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~-~lg~~~~~~~   85 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINRD-KHLAVAYF-QRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTT
T ss_pred             HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-ccchHHHH-HHHHHHHHcc
Confidence            44455678999999888765    466788888888888888 78999988888875542 12233333 46666777 8


Q ss_pred             cHHhHHHHHHHHHHcCCCCc--------------hHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010739          320 LLADGSRLSSWAIQEGGSSL--------------YGVVHERLLAMYICAGRGLEAERQLWEMKLV  370 (502)
Q Consensus       320 ~~~~a~~~~~~m~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  370 (502)
                      ++++|.+.|++.........              ....|..+-..|.+.|++++|...|++..+.
T Consensus        86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            88888888888777543222              3357777888888888888888888887754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.84  E-value=0.00033  Score=60.58  Aligned_cols=98  Identities=10%  Similarity=-0.040  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC----
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLV----GKEA--DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN-SLCK----  410 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~-~~p~----  410 (502)
                      .+++.+-..|...|++++|...+++..+.    +-.|  ....+..+-..+...|++++|.+.++...... ...+    
T Consensus        67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  146 (203)
T 3gw4_A           67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI  146 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence            45555666666666666666666654432    1111  12234444556666677777766665443211 0111    


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          411 KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       411 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ..++..+-..|...|++++|.+.+++..+
T Consensus       147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            22345577777888888888888877543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.81  E-value=0.00077  Score=55.95  Aligned_cols=82  Identities=12%  Similarity=-0.111  Sum_probs=34.7

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      |++++|...|++........  ...|..+...+.+.|++++|...+++..+.. ..+...|..+-..+...|++++|.+.
T Consensus        27 ~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~  103 (166)
T 1a17_A           27 KDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD  103 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence            44444444444443332211  2244444444444555555555554444321 11233333333444444444444444


Q ss_pred             HHHHH
Q 010739          399 LSRIE  403 (502)
Q Consensus       399 ~~~m~  403 (502)
                      ++...
T Consensus       104 ~~~a~  108 (166)
T 1a17_A          104 YETVV  108 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.80  E-value=0.0011  Score=57.84  Aligned_cols=112  Identities=13%  Similarity=-0.093  Sum_probs=54.6

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      |++++|.+.|++..     +++...|..+...|.+.|++++|...|++..+.. ..+...|..+-.++...|++++|.+.
T Consensus        20 ~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~   93 (213)
T 1hh8_A           20 KDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD   93 (213)
T ss_dssp             TCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHH
Confidence            55555555554431     1133455555555555555555555555554432 12334444444555555555555555


Q ss_pred             HHHHHHcCCC--------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 010739          399 LSRIEVMNSL--------------C-KKKTLSWLLRGYIKGGHINDAAETLTK  436 (502)
Q Consensus       399 ~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~A~~l~~~  436 (502)
                      ++........              | ....+..+...|.+.|++++|.+.|++
T Consensus        94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5544433211              0 113444455555555555555555554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.79  E-value=0.00048  Score=56.91  Aligned_cols=105  Identities=10%  Similarity=-0.073  Sum_probs=80.9

Q ss_pred             CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010739          337 SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLS  415 (502)
Q Consensus       337 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~  415 (502)
                      .+.+...|..+-..+.+.|++++|...|++..+.  .| +...|..+-.++...|++++|.+.++....... -+...|.
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~  108 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVF  108 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHH
Confidence            3445567777778888889999999999888764  45 455666677888888999999988888777652 2567788


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 010739          416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEY  446 (502)
Q Consensus       416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  446 (502)
                      .+-.+|.+.|++++|.+.|++.++..  ||.
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~--~~~  137 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHS--NDE  137 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence            88888999999999999999887653  554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.77  E-value=0.00094  Score=52.07  Aligned_cols=89  Identities=9%  Similarity=-0.030  Sum_probs=46.3

Q ss_pred             HHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010739          314 EKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEG  392 (502)
Q Consensus       314 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~  392 (502)
                      ..|.. |++++|.+.|+++......  +...|..+...+.+.|++++|..+|+++.+.. ..+..++..+...+...|++
T Consensus        17 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~   93 (125)
T 1na0_A           17 NAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDY   93 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCH
Confidence            33444 5555555555554443221  22355555555666666666666666555432 22344555555556666666


Q ss_pred             hHHHHHHHHHHHc
Q 010739          393 SAVSRLLSRIEVM  405 (502)
Q Consensus       393 ~~a~~l~~~m~~~  405 (502)
                      ++|.+.++.....
T Consensus        94 ~~A~~~~~~~~~~  106 (125)
T 1na0_A           94 DEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.76  E-value=0.0011  Score=58.12  Aligned_cols=161  Identities=11%  Similarity=-0.036  Sum_probs=109.7

Q ss_pred             HHHHhCcHHHHHHHHHHHHHcCCCCC-HhHHHH----------------HHHHHHhccccHHHHHHHHHHHHHcCCCCch
Q 010739          243 KMMVEGKYVDAIKLVIHLRESGLKPE-VYSYLI----------------ALTAVVKELNEFGKALRKLKGYVRAGSIAEL  305 (502)
Q Consensus       243 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~----------------li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~  305 (502)
                      .+...|++++|+..|++....  .|+ ...|..                +-.++.+. |++++|...+++..+.  .|+.
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~   87 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKELLQK--APNN   87 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH--CCCC
Confidence            445679999999999998765  454 344555                77788888 8999999999988654  3443


Q ss_pred             hchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHH--H
Q 010739          306 DGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGR--GLEAERQLWEMKLVGKEADGDLY--D  380 (502)
Q Consensus       306 ~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~--~  380 (502)
                      ......+-..|.. |++++|...|++........  ...|..+-..|...|+  .+.+...+....    .|+...+  .
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~  161 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADN--LAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYARY  161 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHHHH
Confidence            3322256777888 99999999999988876444  3488888888766554  344555555543    4554333  2


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010739          381 IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW  416 (502)
Q Consensus       381 ~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~  416 (502)
                      ..-.++...|++++|...++.....  .|+......
T Consensus       162 ~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~  195 (208)
T 3urz_A          162 RDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT  195 (208)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence            2234555678999999999887754  477554433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.73  E-value=0.0016  Score=54.04  Aligned_cols=128  Identities=8%  Similarity=-0.100  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      ..|..+-..+...|++++|...|++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            477788888999999999999999987643 2356778888889999999999999998887765 33677888899999


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHccccccccHHHHHHHHhhh
Q 010739          422 IKGGHINDAAETLTKMLDLGLYPEYMDRVA--VLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       422 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      .+.|++++|.+.|++..+..- -+...+..  ....+.+    .|+.++|+..+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVK----QKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHH----HHHHHHHHHcccch
Confidence            999999999999999887542 23333322  2222444    68899998887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.72  E-value=0.00061  Score=57.68  Aligned_cols=119  Identities=10%  Similarity=0.079  Sum_probs=91.4

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAI-CASQNEG--SAV  395 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~~~~--~~a  395 (502)
                      |++++|...+++........  ...|..+-..|...|++++|...|++..+.. ..+...+..+-.. +...|++  ++|
T Consensus        24 ~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           24 QNPEAQLQALQDKIRANPQN--SEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ---CCCCHHHHHHHHHCCSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            78888888888877665433  4588889999999999999999999987643 1245566666666 6788998  999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          396 SRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       396 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      ...++...... ..+...+..+...|...|++++|...|++..+..
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            99998887765 2356777788899999999999999999988764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.70  E-value=0.0013  Score=52.25  Aligned_cols=104  Identities=13%  Similarity=-0.066  Sum_probs=76.9

Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      ....|...-..|.+.|++++|+..|++..+.. +-+...|..+-.++...|++++|.+.++.....+ ..+...|..+-.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~   89 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence            34466777778888888888888888877542 2255667777778888888888888887776655 235777888888


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 010739          420 GYIKGGHINDAAETLTKMLDLGLYPEYM  447 (502)
Q Consensus       420 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~  447 (502)
                      .|...|++++|.+.|++.++.  .|+..
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l--~P~~~  115 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQV--DPSNE  115 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH--CcCCH
Confidence            888889999999988887763  35443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.70  E-value=0.00046  Score=59.63  Aligned_cols=153  Identities=11%  Similarity=-0.066  Sum_probs=104.6

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChh
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV----GKEA-DGDLYDIVLAICASQNEGS  393 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~~~~~  393 (502)
                      |++++|.+.++...  +.+.....+++.+-..+...|++++|...+++..+.    +..| ....+..+-..+...|+++
T Consensus         6 g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            6 HDYALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             -CHHHHHHHHHHHH--TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            78888888544432  234445678888999999999999999999987652    2222 2345666668899999999


Q ss_pred             HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccccc
Q 010739          394 AVSRLLSRIEVM----NSLC--KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG---LYPE--YMDRVAVLQGLRKRIQQ  462 (502)
Q Consensus       394 ~a~~l~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~~~~~~~~~  462 (502)
                      +|.+.++.....    +..|  ....+..+-..+...|++++|...+++..+..   -.|.  ..++..+-..+..    
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----  159 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----  159 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----
Confidence            999998655433    2111  23456668888999999999999999876431   1121  2233444455555    


Q ss_pred             cccHHHHHHHHhhhh
Q 010739          463 SGNVEAYLNLCKRLS  477 (502)
Q Consensus       463 ~~~~~~a~~~~~~m~  477 (502)
                      .|+.++|...+++..
T Consensus       160 ~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          160 EKNLLEAQQHWLRAR  174 (203)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHH
Confidence            789999988877663

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.69  E-value=0.0014  Score=54.00  Aligned_cols=109  Identities=9%  Similarity=-0.030  Sum_probs=54.6

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQ  389 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~  389 (502)
                      +-..|.+ |++++|.+.|++........  ...|..+-..|.+.|++++|...|++..+.  .| +...|..+-..+.+.
T Consensus        37 la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           37 FAKLYYEAKEYDLAKKYICTYINVQERD--PKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence            4444555 66666666666555543222  336666666666666666666666665542  33 234455555555566


Q ss_pred             CChhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          390 NEGSAVSRL-LSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       390 ~~~~~a~~l-~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                      |+.+++.+. ++...... +-+...|...-..+.+.|
T Consensus       113 ~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          113 DVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             CSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             CChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            655543333 34333332 113444444444444433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.63  E-value=0.0028  Score=58.67  Aligned_cols=160  Identities=9%  Similarity=-0.119  Sum_probs=109.8

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCch----HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHH
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLY----GVVHERLLAMYICAGRGLEAERQLWEMKLVGK---EAD--GDLYDI  381 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~~  381 (502)
                      .+..+.. |++++|.+.+.+.........+    ...+..+...+...|++++|...+++..+...   .+.  ..+|+.
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            4455666 9999999999887776533322    12234455566778999999999999875421   222  457888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 010739          382 VLAICASQNEGSAVSRLLSRIEVM-NSLCK-----KKTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE-YMDRV  450 (502)
Q Consensus       382 li~~~~~~~~~~~a~~l~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~  450 (502)
                      +-..|...|++++|.+.++..... ...|+     ..+|..+...|.+.|++++|.+.+++.++.    +.... ..+|.
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~  240 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            889999999999999999766421 11222     257778999999999999999999987643    22221 45566


Q ss_pred             HHHHHHHccccccccHHHH-HHHHhh
Q 010739          451 AVLQGLRKRIQQSGNVEAY-LNLCKR  475 (502)
Q Consensus       451 ~ll~~~~~~~~~~~~~~~a-~~~~~~  475 (502)
                      .+-..+.+    .|+.++| ...+++
T Consensus       241 ~lg~~y~~----~g~~~~Ai~~~~~~  262 (293)
T 2qfc_A          241 QRGECLRK----LEYEEAEIEDAYKK  262 (293)
T ss_dssp             HHHHHHHH----TTCCHHHHHHHHHH
T ss_pred             HHHHHHHH----cCCcHHHHHHHHHH
Confidence            66666655    5777777 444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.029  Score=54.67  Aligned_cols=202  Identities=8%  Similarity=-0.056  Sum_probs=127.7

Q ss_pred             HHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCC----------chHHHHHHHHhCcHHHHHHHHHHHHHc-CCCC
Q 010739          199 SLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGP----------TGYLAWKMMVEGKYVDAIKLVIHLRES-GLKP  267 (502)
Q Consensus       199 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~----------~~~~~~~~~~~g~~~~a~~~~~~m~~~-g~~p  267 (502)
                      ..+.+.|++++|.+.|.+..+..-.........  +..          ..-+...+...|++++|.+.+...... +-.+
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA--SVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS--SBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH--HHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            445778999999999998887653322111110  000          011444555679999999999887653 2222


Q ss_pred             CHh---HHHHHHHHHHhccccHHHHHHHHHHHH----HcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC----
Q 010739          268 EVY---SYLIALTAVVKELNEFGKALRKLKGYV----RAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG----  335 (502)
Q Consensus       268 ~~~---ty~~li~~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~----  335 (502)
                      +..   .....+..+....++.+++.+++....    +.+..+........+...|.. |++++|..++++....-    
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            322   223334444333378999999887763    334444333222357777888 99999999998765432    


Q ss_pred             CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          336 GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GKE-A-D--GDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       336 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      ..+..+.+|..++..|...|++++|..++++....  .+. | .  ...+..+...+...++++.|...+...
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            22223557888999999999999999999886543  121 2 1  234555556777889999988877444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.57  E-value=0.002  Score=50.63  Aligned_cols=96  Identities=9%  Similarity=-0.100  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYI  422 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~  422 (502)
                      .|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|.+.++...... ..+...+..+...|.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence            44445555555555555555555554431 1134444444455555555555555555444432 123444555555556


Q ss_pred             hCCCHHHHHHHHHHHHHC
Q 010739          423 KGGHINDAAETLTKMLDL  440 (502)
Q Consensus       423 ~~g~~~~A~~l~~~m~~~  440 (502)
                      +.|++++|.+.|++..+.
T Consensus        92 ~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhc
Confidence            666666666666655543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.55  E-value=0.0053  Score=56.48  Aligned_cols=190  Identities=11%  Similarity=-0.119  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .+..+-..+.+.|++ +.|.+.|+...+...-+...|..+-.++.        ..|++++|...+++..+.. +-+...|
T Consensus         6 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~   75 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYL--------KMQQPEQALADCRRALELD-GQSVKAH   75 (281)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHTTSC-TTCHHHH
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            356667778889999 89999999998877447777877777666        8899999999999987753 3367788


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYL  273 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~  273 (502)
                      ..+-.+|.+.|++++|...|++..+.+  |+ ...+..        .++......+.   . -+..........+... .
T Consensus        76 ~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~--------~~~~~~~~~~~---~-~~~~~~~~~~~~~~~i-~  140 (281)
T 2c2l_A           76 FFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGD--------DIPSALRIAKK---K-RWNSIEERRIHQESEL-H  140 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCS--------HHHHHHHHHHH---H-HHHHHHHTCCCCCCHH-H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHH--------HHHHHHHHHHH---H-HHHHHHHHHHhhhHHH-H
Confidence            899999999999999999998877543  22 122333        44444432221   1 1222333333333333 3


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc--CcHHhHHHHHHHHHH
Q 010739          274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS--DLLADGSRLSSWAIQ  333 (502)
Q Consensus       274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~--g~~~~a~~~~~~m~~  333 (502)
                      ..+..+. . ++.++|++.++...  ...|+.......+-..+.+  +.+++|.++|.....
T Consensus       141 ~~l~~l~-~-~~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          141 SYLTRLI-A-AERERELEECQRNH--EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHH-H-HHHHHHHTTTSGGG--TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHH-H-HHHHHHHHHHHhhh--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            3334443 4 57888866554433  3355443322123333333  556667777665443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.55  E-value=0.04  Score=51.13  Aligned_cols=219  Identities=8%  Similarity=0.010  Sum_probs=98.1

Q ss_pred             HHHhcCcH-HHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hC--cHHHHHHHHHHHHHcCCCCC-Hh
Q 010739          200 LYWEMEKK-ERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EG--KYVDAIKLVIHLRESGLKPE-VY  270 (502)
Q Consensus       200 ~~~~~g~~-~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g--~~~~a~~~~~~m~~~g~~p~-~~  270 (502)
                      +..+.|.. ++|+++++.+...+  |+            .+-+|+.-.     -|  ++++++++++.+...  .|. ..
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~n--P~------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~  104 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINEL--AS------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQ  104 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHC--TT------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHC--cH------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHH
Confidence            33455665 35666666666554  22            123343322     24  666666666666554  222 22


Q ss_pred             HHHHHHHHH----Hhcc--ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH--hHHHHHHHHHHcCCCCchH
Q 010739          271 SYLIALTAV----VKEL--NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA--DGSRLSSWAIQEGGSSLYG  341 (502)
Q Consensus       271 ty~~li~~~----~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~--~a~~~~~~m~~~~~~~~~~  341 (502)
                      +|+.--..+    .+.+  +++++++..++.+.+.. .-+...++ .-.-...+ |..+  ++++.++++.+....... 
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~-~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s-  181 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS-YRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS-  181 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH-HHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH-HHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-
Confidence            233322222    2221  34556666665554321 11222232 22222333 4444  555555555554433322 


Q ss_pred             hHHHHHHHHHHHcCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHcC--CCCCHH
Q 010739          342 VVHERLLAMYICAGR------GLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGS-AVSRLLSRIEVMN--SLCKKK  412 (502)
Q Consensus       342 ~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~-~a~~l~~~m~~~~--~~p~~~  412 (502)
                       .|+.-...+.+.+.      ++++++.++++.... .-|...|+-.-..+.+.|+.. .+..+.+.....+  -..+..
T Consensus       182 -AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  259 (306)
T 3dra_A          182 -AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSF  259 (306)
T ss_dssp             -HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHH
T ss_pred             -HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHH
Confidence             44444433444443      555555555555432 124444544444454444422 2333333332221  122444


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          413 TLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       413 ~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      .+..+...|.+.|+.++|.++++.+.+
T Consensus       260 al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          260 ALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            555555555555566666666655543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.53  E-value=0.00051  Score=56.53  Aligned_cols=100  Identities=13%  Similarity=0.007  Sum_probs=76.6

Q ss_pred             CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010739          338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSW  416 (502)
Q Consensus       338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~  416 (502)
                      +.+...+..+-..+.+.|++++|...|++....  .| +...|..+-.++...|++++|.+.++...... ..+...+..
T Consensus        18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~   94 (148)
T 2vgx_A           18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFH   94 (148)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence            334556777777888889999999888887754  34 55666666678888899999988888777665 235677777


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          417 LLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       417 li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      +-.+|...|++++|.+.|++.++.
T Consensus        95 lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           95 AAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888899999999999999887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.01  Score=58.06  Aligned_cols=198  Identities=13%  Similarity=-0.015  Sum_probs=136.5

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCC-C---------------HhHHHHHHHHHHhccccHHHHHHHHHHHHH-cCCCC
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKP-E---------------VYSYLIALTAVVKELNEFGKALRKLKGYVR-AGSIA  303 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p-~---------------~~ty~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~p  303 (502)
                      ...+...|++++|++.|....+..-.. +               ...+..+...|.+. |++++|.+.+....+ .+-.+
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM-GAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHcc
Confidence            344567899999999999988752211 1               12367788999999 899999999988732 22223


Q ss_pred             chhchH--HHHHHHH-hc-CcHHhHHHHHHHHHH----cCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-
Q 010739          304 ELDGKN--LGLIEKY-QS-DLLADGSRLSSWAIQ----EGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV--GK-  372 (502)
Q Consensus       304 ~~~~~~--~~li~~~-~~-g~~~~a~~~~~~m~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-  372 (502)
                      +..+..  ..++..+ .. |+.+.|.+++.....    .+....-..++..+...|...|++++|..++++....  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            332211  0233443 34 999999998876554    2233333457888999999999999999999987654  21 


Q ss_pred             -CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--C-CC-C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          373 -EA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMN--S-LC-K--KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       373 -~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~--~-~p-~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                       +| ....|..+...|...|++++|..+++......  . .| .  ...+..+...+...|++++|...|.+..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             22 23467777899999999999999997654321  1 12 1  24555677778889999999888877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.51  E-value=0.0027  Score=49.94  Aligned_cols=107  Identities=11%  Similarity=-0.054  Sum_probs=73.5

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS--LCK----KKTLS  415 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~--~p~----~~~~~  415 (502)
                      ..|..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...++.......  .++    ...+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            356667777777888888888887776543 23455666666777777888888887766654431  122    55677


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010739          416 WLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVA  451 (502)
Q Consensus       416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  451 (502)
                      .+...|.+.|++++|.+.|++..+..  |+......
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~  117 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK  117 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHH
Confidence            78888889999999999999887753  55444333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.50  E-value=0.0065  Score=47.51  Aligned_cols=113  Identities=12%  Similarity=-0.048  Sum_probs=85.1

Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQ  389 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  389 (502)
                      .+...+.. |++++|...|++.......  +...|..+...+...|++++|...+++..+.. ..+...+..+-..+...
T Consensus        17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           17 TEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence            34555666 9999999999888776533  34588888888999999999999999887652 22466777777889999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739          390 NEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI  427 (502)
Q Consensus       390 ~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  427 (502)
                      |++++|.+.++...... ..+...+..+...+.+.|+.
T Consensus        94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            99999999998877664 22566666677777766654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.49  E-value=0.1  Score=52.11  Aligned_cols=340  Identities=9%  Similarity=-0.058  Sum_probs=171.4

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhC-CCC-CCHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCV-GLK-PGFS  192 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~-g~~-p~~~  192 (502)
                      |...+..+-. |.. +.+..+|+.....- |+...|...++ +..       +.+ ..+....+|+..... |.. .+..
T Consensus        18 yer~l~~~P~-~~~-e~~~~iferal~~~-ps~~LW~~Y~~-f~~-------~~~~~~~~i~~~fe~al~~vg~d~~s~~   86 (493)
T 2uy1_A           18 MEHARRLYMS-KDY-RSLESLFGRCLKKS-YNLDLWMLYIE-YVR-------KVSQKKFKLYEVYEFTLGQFENYWDSYG   86 (493)
T ss_dssp             HHHHHHHHHT-TCH-HHHHHHHHHHSTTC-CCHHHHHHHHH-HHH-------HHC----CTHHHHHHHHHHSTTCTTCHH
T ss_pred             HHHHHHHCCC-CCH-HHHHHHHHHHhccC-CCHHHHHHHHH-HHH-------HhCchHHHHHHHHHHHHHHcCCCcccHH
Confidence            3344444433 556 68888888776643 78888887777 432       222 234555666655442 432 3566


Q ss_pred             HHHHHHHHHH----hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH------------------hCcH
Q 010739          193 MIEKVISLYW----EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV------------------EGKY  250 (502)
Q Consensus       193 ~y~~li~~~~----~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~------------------~g~~  250 (502)
                      .|...+..+.    ..|+.+.+.++|+.....   |.. .+.         -+|....                  .+.+
T Consensus        87 iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~---------~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y  153 (493)
T 2uy1_A           87 LYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLS---------ELWKDFENFELELNKITGKKIVGDTLPIF  153 (493)
T ss_dssp             HHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THH---------HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHH---------HHHHHHHHHHHHhccccHHHHHHHHhHHH
Confidence            7777776654    346777888888887752   211 011         1222111                  1234


Q ss_pred             HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcc---cc---HHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHh
Q 010739          251 VDAIKLVIHLRESGLKPEVYSYLIALTAVVKEL---NE---FGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       251 ~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~---~~---~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~  323 (502)
                      ..|..+++++...--..+...|...+.---..+   .+   .+.+..++++.+... ..+...|- ..+..+.+ |+.+.
T Consensus       154 ~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~-~ya~~~~~~~~~~~  231 (493)
T 2uy1_A          154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYF-FYSEYLIGIGQKEK  231 (493)
T ss_dssp             HHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHH-HHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHH-HHHHHHHHcCCHHH
Confidence            444555554443200012234444333322210   11   345667788875432 12233332 34455556 99999


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCC
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVG---------KEA---DGDLYDIVLAICASQNE  391 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p---~~~t~~~li~~~~~~~~  391 (502)
                      |..++++....  |. +...|.    .|+...+.++.   ++.+.+.-         ..+   ....|...+....+.+.
T Consensus       232 ar~i~erAi~~--P~-~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~  301 (493)
T 2uy1_A          232 AKKVVERGIEM--SD-GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG  301 (493)
T ss_dssp             HHHHHHHHHHH--CC-SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhC--CC-cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence            99999998888  33 322332    23332222222   22222210         011   12345555555556677


Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccccccccHHH
Q 010739          392 GSAVSRLLSRIEVMNSLCKKKTLSW--LLRGYIKGGHINDAAETLTKMLDLGLYPE-YMDRVAVLQGLRKRIQQSGNVEA  468 (502)
Q Consensus       392 ~~~a~~l~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~  468 (502)
                      ++.|..+|+.. ... ..+...|-.  .+...+ .++.+.|..+|+...+..  |+ ...+...++-..+    .|+.+.
T Consensus       302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~----~~~~~~  372 (493)
T 2uy1_A          302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLR----IGDEEN  372 (493)
T ss_dssp             HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH----HTCHHH
T ss_pred             HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH----cCCHHH
Confidence            88888888777 221 123333332  222222 236888888888877643  33 2223333443333    577778


Q ss_pred             HHHHHhhhhhcCCchhHHHHHHHhhcchhhhh
Q 010739          469 YLNLCKRLSDTSLIGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       469 a~~~~~~m~~~~~~~~~li~~y~~~g~~~~~~  500 (502)
                      |..+++.......+....++.=.+.|+++.++
T Consensus       373 aR~l~er~~k~~~lw~~~~~fE~~~G~~~~~r  404 (493)
T 2uy1_A          373 ARALFKRLEKTSRMWDSMIEYEFMVGSMELFR  404 (493)
T ss_dssp             HHHHHHHSCCBHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            88777776432224455555555566666553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.49  E-value=0.0033  Score=49.66  Aligned_cols=101  Identities=14%  Similarity=-0.027  Sum_probs=75.8

Q ss_pred             CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010739          338 SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWL  417 (502)
Q Consensus       338 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~l  417 (502)
                      +.+...|..+...+.+.|++++|...|++..+.. ..+...+..+-..+...|++++|.+.++...... ..+...+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence            3455677888888888888888888888877542 2256667777778888888888888887776654 2356677778


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHC
Q 010739          418 LRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       418 i~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      ...|.+.|++++|.+.|++..+.
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHh
Confidence            88888888888888888887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.48  E-value=0.00097  Score=54.93  Aligned_cols=134  Identities=7%  Similarity=-0.040  Sum_probs=95.8

Q ss_pred             hCcHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCch-hchHHHHHHHHhc-CcHHh
Q 010739          247 EGKYVDAIKLVIHLRESGLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAEL-DGKNLGLIEKYQS-DLLAD  323 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~~li~~~~~-g~~~~  323 (502)
                      .|++++|++.+......  .|+ ...+-.+-..|.+. +++++|++.|++.++.  .|+. ..+. .+-..|.+ |++++
T Consensus        10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~--~p~~~~a~~-~lg~~~~~~~~~~~   83 (150)
T 4ga2_A           10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINV--QERDPKAHR-FLGLLYELEENTDK   83 (150)
T ss_dssp             HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHHH
T ss_pred             cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCchHH
Confidence            47889999888875432  343 34556677888899 8999999999998654  3443 3443 56677888 99999


Q ss_pred             HHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHH-HHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 010739          324 GSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQ-LWEMKLVGKEAD-GDLYDIVLAICASQN  390 (502)
Q Consensus       324 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p~-~~t~~~li~~~~~~~  390 (502)
                      |...|++..+......  ..|..+-..|.+.|+.++|... +++..+  +.|+ ...|...-..+...|
T Consensus        84 A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELNPTQK--DLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence            9999999888764443  4899999999999999876655 576664  3454 445554445555544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.47  E-value=0.0015  Score=53.84  Aligned_cols=96  Identities=13%  Similarity=0.051  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +..+-..+.+.|++ ++|.+.|+...+..+-+...|..+-.++.        ..|++++|+..|++..+..- -+...|.
T Consensus        39 ~~~lg~~~~~~g~~-~eA~~~~~~al~~~P~~~~~~~~lg~~~~--------~~g~~~~Ai~~~~~al~l~P-~~~~~~~  108 (151)
T 3gyz_A           39 IYSYAYDFYNKGRI-EEAEVFFRFLCIYDFYNVDYIMGLAAIYQ--------IKEQFQQAADLYAVAFALGK-NDYTPVF  108 (151)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHSS-SCCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HHccHHHHHHHHHHHHhhCC-CCcHHHH
Confidence            66677788899999 89999999999888557888888888777        89999999999999988532 3567899


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .+-.+|.+.|++++|...|+...+..
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999998765

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.46  E-value=0.0018  Score=59.16  Aligned_cols=185  Identities=11%  Similarity=-0.050  Sum_probs=107.9

Q ss_pred             HhCcHHHHHHHHHHHHHcCCCCC-HhHHHHH-------HHHHHhccccHHHHHHHHHHHHHcCCCCchhch---------
Q 010739          246 VEGKYVDAIKLVIHLRESGLKPE-VYSYLIA-------LTAVVKELNEFGKALRKLKGYVRAGSIAELDGK---------  308 (502)
Q Consensus       246 ~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~l-------i~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---------  308 (502)
                      ..++..+|.+.|.+....  .|+ ...|+.+       ...+.+. ....+++..+.  ...++.|+....         
T Consensus        18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~-~r~~~a~~~~~--~~l~l~p~~l~a~~~~~g~y~   92 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRA-WYSRRNFGQLS--GSVQISMSTLNARIAIGGLYG   92 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHH-HHTGGGTTHHH--HTTTCCGGGGCCEEECCTTTC
T ss_pred             cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHH-HHHHHHHHHHH--HHhcCChhhhhhhhccCCccc
Confidence            478999999999999876  444 3555555       2333333 22233322111  333444432211         


Q ss_pred             ------------HHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 010739          309 ------------NLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD  375 (502)
Q Consensus       309 ------------~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  375 (502)
                                  .......+.. |++++|.++|+.+...+  +.+. ....+-..+.+.+++++|+..|+....   .|+
T Consensus        93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d  166 (282)
T 4f3v_A           93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGK---WPD  166 (282)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGG---CSC
T ss_pred             ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhc---cCC
Confidence                        1124455666 88888888876554432  2233 444444567778888888888874332   222


Q ss_pred             H----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          376 G----DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK--KKTLSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       376 ~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      .    ..+..+=.++...|++++|...|+........|.  .......-.++.+.|+.++|..+|+++....
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            2    2334444677888888888888877664332243  2244445666777888888888888877643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.44  E-value=0.0038  Score=49.19  Aligned_cols=97  Identities=13%  Similarity=-0.110  Sum_probs=70.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      ..|..+-..+.+.|++++|...|++..+.. ..+...|..+-.++...|++++|.+.++...... ..+...|..+-..|
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            356666677777888888888888776542 2245666667777788888888888887776654 22566777788888


Q ss_pred             HhCCCHHHHHHHHHHHHHC
Q 010739          422 IKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       422 ~~~g~~~~A~~l~~~m~~~  440 (502)
                      ...|++++|.+.|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            8888888888888887653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.43  E-value=0.0035  Score=50.81  Aligned_cols=98  Identities=12%  Similarity=-0.029  Sum_probs=68.8

Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL  418 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li  418 (502)
                      +...+..+-..+.+.|++++|...|++....  .| +...|..+-.++...|++++|...++...... ..+...+..+-
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg   93 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence            3345555666677788888888888877653  34 44555556677777888888888887776654 23556667777


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHC
Q 010739          419 RGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       419 ~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      .+|...|++++|.+.|++..+.
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            8888888888888888877654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.43  E-value=0.00047  Score=59.71  Aligned_cols=98  Identities=13%  Similarity=-0.065  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD--------------GDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      ..+..+-..+.+.|++++|...|++..+..- .|+              ...|..+-.++...|++++|...++......
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            4666677778888888888888888776421 121              2566777778888899999998888777664


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                       ..+...+..+-.+|...|++++|.+.|++..+.
T Consensus       119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence             336777778888899999999999999987764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.40  E-value=0.0021  Score=48.90  Aligned_cols=94  Identities=6%  Similarity=-0.172  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 010739          344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC--KKKTLSWLLRGY  421 (502)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~  421 (502)
                      |..+...+.+.|++++|...|++..+.. ..+...+..+-..+...|++++|.+.++...... ..  +...+..+...|
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHH
Confidence            3333444444444444444444444321 1123333444444444455555544444443332 11  244444455555


Q ss_pred             HhC-CCHHHHHHHHHHHHH
Q 010739          422 IKG-GHINDAAETLTKMLD  439 (502)
Q Consensus       422 ~~~-g~~~~A~~l~~~m~~  439 (502)
                      .+. |++++|.+.+++...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGG
T ss_pred             HHHhCCHHHHHHHHHHHhh
Confidence            555 555555555555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.40  E-value=0.003  Score=50.16  Aligned_cols=96  Identities=7%  Similarity=-0.114  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +...=..+.+.|++ +.|++.|+...+....+...|..+-.++.        +.|++++|+..|++..+.. +.+...|.
T Consensus        16 ~~~~G~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~a~~   85 (126)
T 4gco_A           16 EKNKGNEYFKKGDY-PTAMRHYNEAVKRDPENAILYSNRAACLT--------KLMEFQRALDDCDTCIRLD-SKFIKGYI   85 (126)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHhhHHH--------hhccHHHHHHHHHHHHHhh-hhhhHHHH
Confidence            66666788899999 89999999999887557888888888777        8999999999999988753 23678899


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .+-.+|.+.|++++|.+.|++..+..
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            99999999999999999999988764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.39  E-value=0.0048  Score=58.48  Aligned_cols=146  Identities=10%  Similarity=-0.090  Sum_probs=93.1

Q ss_pred             CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHHH
Q 010739          268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHERL  347 (502)
Q Consensus       268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  347 (502)
                      +...|..+-..+.+. +++++|...|++..+..  |+.....           .+.+.++-         +.....|..+
T Consensus       146 ~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~--p~~~~~~-----------~~~~~~~~---------~~~~~~~~nl  202 (336)
T 1p5q_A          146 QSTIVKERGTVYFKE-GKYKQALLQYKKIVSWL--EYESSFS-----------NEEAQKAQ---------ALRLASHLNL  202 (336)
T ss_dssp             HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHT--TTCCCCC-----------SHHHHHHH---------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHh--hccccCC-----------hHHHHHHH---------HHHHHHHHHH
Confidence            455667777777777 67888888777764432  2111000           00000000         0013477777


Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 010739          348 LAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHI  427 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~  427 (502)
                      -.+|.+.|++++|...|++..+.. .-+...|..+-.++...|++++|...|+...... .-+...+..+...+.+.|+.
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence            778888888888888888877642 2255667777778888888888888887776654 22566777788888888888


Q ss_pred             HHH-HHHHHHHH
Q 010739          428 NDA-AETLTKML  438 (502)
Q Consensus       428 ~~A-~~l~~~m~  438 (502)
                      ++| ..+|+.|.
T Consensus       281 ~~a~~~~~~~~~  292 (336)
T 1p5q_A          281 LAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            887 44666664

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.39  E-value=0.0034  Score=49.58  Aligned_cols=97  Identities=9%  Similarity=-0.109  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .|..+-..+.+.|++ +.|.+.|+...+....+...+..+...+.        ..|++++|...+++..+.. +.+...+
T Consensus        18 ~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~--------~~~~~~~A~~~~~~a~~~~-~~~~~~~   87 (133)
T 2lni_A           18 MVKNKGNECFQKGDY-PQAMKHYTEAIKRNPKDAKLYSNRAACYT--------KLLEFQLALKDCEECIQLE-PTFIKGY   87 (133)
T ss_dssp             HHHHHHHHHHHTTCS-HHHHHHHHHHHTTCTTCHHHHHHHHHHHT--------TTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHH--------HhccHHHHHHHHHHHHHhC-CCchHHH
Confidence            377888889999999 89999999998877457778887777676        8999999999999988753 3467889


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      ..+...|.+.|++++|.+.|++..+..
T Consensus        88 ~~la~~~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           88 TRKAAALEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999987654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.37  E-value=0.0013  Score=55.65  Aligned_cols=119  Identities=11%  Similarity=0.101  Sum_probs=70.7

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH-HHh
Q 010739          125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL-YWE  203 (502)
Q Consensus       125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~-~~~  203 (502)
                      ..|++ +.|.+.++...+....+...|..+...+.        ..|++++|...|++..+.. +.+...+..+... |.+
T Consensus        22 ~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~   91 (177)
T 2e2e_A           22 SQQNP-EAQLQALQDKIRANPQNSEQWALLGEYYL--------WQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQ   91 (177)
T ss_dssp             ------CCCCHHHHHHHHHCCSCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHH
T ss_pred             hccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence            34566 57777777766665345666666666555        6777777777777766542 2255566666666 667


Q ss_pred             cCcH--HHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHc
Q 010739          204 MEKK--ERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRES  263 (502)
Q Consensus       204 ~g~~--~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~  263 (502)
                      .|++  ++|...|++..+.+  |+. ..+..        +...+...|++++|...|++....
T Consensus        92 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~--------la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           92 ASQHMTAQTRAMIDKALALD--SNEITALML--------LASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             TTTCCCHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cCCcchHHHHHHHHHHHHhC--CCcHHHHHH--------HHHHHHHcccHHHHHHHHHHHHhh
Confidence            7776  77777777776554  221 11111        333444467777777777776654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.36  E-value=0.0063  Score=48.49  Aligned_cols=99  Identities=9%  Similarity=-0.091  Sum_probs=74.6

Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      +...|..+-..+.+.|++++|...|++..+.. ..+...|..+-..+...|++++|...++...... ..+...+..+-.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            44577777788888888888888888876543 2245666777778888888888888887776655 235677777888


Q ss_pred             HHHhCCCHHHHHHHHHHHHHC
Q 010739          420 GYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       420 ~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      .|...|++++|...|++..+.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            888899999999888887653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.36  E-value=0.0024  Score=58.32  Aligned_cols=195  Identities=10%  Similarity=-0.052  Sum_probs=118.9

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHHcCCCCCCcccccc-CCCC---
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKV-------ISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQ-QGGP---  236 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~l-------i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~-~~~~---  236 (502)
                      ..++...|...|.+..+..- -....|+.+       ...+.+.++..++...+  -...++.|+....... .|..   
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~--~~~l~l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQL--SGSVQISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHH--HHTTTCCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHH--HHHhcCChhhhhhhhccCCccccc
Confidence            56899999999999988532 245677766       35555544444443333  3344556655433332 2211   


Q ss_pred             -------chH---HHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc--
Q 010739          237 -------TGY---LAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE--  304 (502)
Q Consensus       237 -------~~~---~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~--  304 (502)
                             ..+   ....+...|++++|.++|+.+...  .|+....-.+-..+.+. +++++|+..|+...... .|.  
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~-~r~~dA~~~l~~a~~~~-d~~~~  170 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAA-ERWTDVIDQVKSAGKWP-DKFLA  170 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHT-TCHHHHHHHHTTGGGCS-CHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHc-CCHHHHHHHHHHhhccC-CcccH
Confidence                   000   223344479999999999887764  35554444444466666 78999998887543322 111  


Q ss_pred             hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCC-CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 010739          305 LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGG-SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV  370 (502)
Q Consensus       305 ~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  370 (502)
                      ...+. .+-.++.. |++++|++.|++...... |......+...-.++.+.|+.++|..+|+++...
T Consensus       171 ~~a~~-~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          171 GAAGV-AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHH-HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            11121 35555777 888899888888764333 3323335566666778888888888888888764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.36  E-value=0.0069  Score=46.41  Aligned_cols=97  Identities=12%  Similarity=-0.093  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      ..|..+...+...|++++|...|++..... ..+...+..+...+...|++++|...++...... ..+...+..+...|
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            356666777777888888888887776542 2245566666677777788888888777666554 22566777777888


Q ss_pred             HhCCCHHHHHHHHHHHHHC
Q 010739          422 IKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       422 ~~~g~~~~A~~l~~~m~~~  440 (502)
                      ...|++++|.+.|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhHHHHHHHHHHHHHc
Confidence            8888888888888887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.36  E-value=0.0074  Score=57.15  Aligned_cols=129  Identities=12%  Similarity=-0.025  Sum_probs=97.8

Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          341 GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD--------------GDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      ...|..+-..|.+.|++++|...|++..+..-...              ...|..+-.++.+.|++++|.+.++......
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45777788888888999999998888776432211              4788888899999999999999999887765


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccccccccHHHHH-HHHhhh
Q 010739          407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP-EYMDRVAVLQGLRKRIQQSGNVEAYL-NLCKRL  476 (502)
Q Consensus       407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~~~~~a~-~~~~~m  476 (502)
                       ..+...|..+-.+|...|++++|...|++.++..  | +...+..+-..+..    .|+.+++. ..++.|
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQR----IRRQLAREKKLYANM  291 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence             3378888889999999999999999999988753  4 34455555555554    56777663 344444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.33  E-value=0.0063  Score=49.06  Aligned_cols=99  Identities=13%  Similarity=-0.093  Sum_probs=77.0

Q ss_pred             chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 010739          339 LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD----GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTL  414 (502)
Q Consensus       339 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~  414 (502)
                      .+...|..+...+.+.|++++|...|++..+  ..|+    ...|..+-..+...|++++|.+.++...... ..+...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            3456777788888888999999999988875  3566    5666677778888899999988887776654 2356677


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          415 SWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       415 ~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      ..+...|...|++++|...|++..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            77888888999999999999987764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.32  E-value=0.0063  Score=50.56  Aligned_cols=99  Identities=10%  Similarity=-0.088  Sum_probs=71.0

Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      +...|..+-..+.+.|++++|...|++..+.. .-+...|..+-.++...|++++|.+.++...... .-+...|..+-.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            34566677777777888888888888776542 1245566666677778888888888887776654 225667777888


Q ss_pred             HHHhCCCHHHHHHHHHHHHHC
Q 010739          420 GYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       420 ~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      .|.+.|++++|.+.|++.++.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888888888888888887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.31  E-value=0.0075  Score=47.84  Aligned_cols=105  Identities=9%  Similarity=0.003  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC----HHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS--LCK----KKTL  414 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~--~p~----~~~~  414 (502)
                      ..+..+-..+.+.|++++|+..|++..+.  .| +...|+.+-.++...|++++|.+.++.......  .++    ..+|
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            46667777777888888888888877653  34 355566666777888888888877765544321  111    2356


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010739          415 SWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRV  450 (502)
Q Consensus       415 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  450 (502)
                      ..+-..|...|++++|.+.|++.+..  .||..+..
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  120 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK  120 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence            66777888899999999999987763  35554433

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.28  E-value=0.18  Score=50.32  Aligned_cols=324  Identities=6%  Similarity=-0.070  Sum_probs=180.3

Q ss_pred             cChhhHHHHHHHHHHcCCChHHHHHHHHHHHHc-C--CCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC
Q 010739          111 LSARELQLVLVYFSQEGRDSWCALEVFEWLKKE-N--RVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL  187 (502)
Q Consensus       111 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-~--~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~  187 (502)
                      ++.+.|..-+....+.+...+....+|+..... |  ..+...|...+. +...   .....++++.+..+|+...+...
T Consensus        45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~-f~~~---~~~~~~~~~~vR~iy~rAL~~P~  120 (493)
T 2uy1_A           45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE-EEGK---IEDEQTRIEKIRNGYMRALQTPM  120 (493)
T ss_dssp             CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH-HTSS---CSSHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH-HHHh---chhhhHHHHHHHHHHHHHHhChh
Confidence            344557777777766664324677888887754 4  346778887777 4310   00035778899999999887422


Q ss_pred             CCCHHHHHHHHHHHH-------------hcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH---hCc--
Q 010739          188 KPGFSMIEKVISLYW-------------EMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV---EGK--  249 (502)
Q Consensus       188 ~p~~~~y~~li~~~~-------------~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~---~g~--  249 (502)
                      .--...|......-.             +.+.+..|..+++++...-  ++.           +.-+|....   .++  
T Consensus       121 ~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~--~~~-----------s~~~W~~y~~~E~~~~~  187 (493)
T 2uy1_A          121 GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI--RGW-----------SVKNAARLIDLEMENGM  187 (493)
T ss_dssp             TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC-----------SHHHHHHHHHHHHTCTT
T ss_pred             hhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH--hhc-----------cHHHHHHHHHHHhcCCc
Confidence            111122222211110             1122334444444443210  000           001222222   121  


Q ss_pred             -------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcH
Q 010739          250 -------YVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLL  321 (502)
Q Consensus       250 -------~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~  321 (502)
                             .+.+..+|++.... ++-+...|-..+.-+.+. |+.++|..+++.-...   |......    -.|.. ...
T Consensus       188 ~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~---P~~~~l~----~~y~~~~e~  258 (493)
T 2uy1_A          188 KLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGI-GQKEKAKKVVERGIEM---SDGMFLS----LYYGLVMDE  258 (493)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH---CCSSHHH----HHHHHHTTC
T ss_pred             cCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC---CCcHHHH----HHHHhhcch
Confidence                   45677888888775 344566777777777777 7999999999998766   5544322    12333 222


Q ss_pred             HhHHHHHHHHHHcC----------CC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHh
Q 010739          322 ADGSRLSSWAIQEG----------GS-SLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYD--IVLAICAS  388 (502)
Q Consensus       322 ~~a~~~~~~m~~~~----------~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~  388 (502)
                      ++.   ++.+...-          .+ ......|-..+....+.+..+.|..+|++....+  .+...|.  +.+.... 
T Consensus       259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-  332 (493)
T 2uy1_A          259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-  332 (493)
T ss_dssp             THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-
T ss_pred             hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-
Confidence            222   32222211          01 1112456666776767888999999999982222  2444443  3333332 


Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHH
Q 010739          389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEA  468 (502)
Q Consensus       389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~  468 (502)
                      .++.+.|..+|+.....- .-+...+...++-..+.|+.+.|..+|++..     .....|...++-=..    .|+.+.
T Consensus       333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~----~G~~~~  402 (493)
T 2uy1_A          333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM----VGSMEL  402 (493)
T ss_dssp             HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH----HSCHHH
T ss_pred             CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----CCCHHH
Confidence            347999999998765532 1134445557777788899999999999962     245555555543333    477777


Q ss_pred             HHHHHhhh
Q 010739          469 YLNLCKRL  476 (502)
Q Consensus       469 a~~~~~~m  476 (502)
                      +.++++..
T Consensus       403 ~r~v~~~~  410 (493)
T 2uy1_A          403 FRELVDQK  410 (493)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76655555

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.28  E-value=0.0034  Score=47.73  Aligned_cols=98  Identities=11%  Similarity=-0.035  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC--CH
Q 010739          114 RELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP--GF  191 (502)
Q Consensus       114 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~  191 (502)
                      ..+..+-..+.+.|++ +.|...|+...+....+...|..+...+.        ..|++++|...|++..+.. +.  +.
T Consensus         7 ~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~a~~~~-~~~~~~   76 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNY-TESIDLFEKAIQLDPEESKYWLMKGKALY--------NLERYEEAVDCYNYVINVI-EDEYNK   76 (112)
T ss_dssp             TGGGGHHHHHHSSCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHTS-CCTTCH
T ss_pred             HHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-cccchH
Confidence            3467777788899999 89999999998887557777777777676        8999999999999988753 23  57


Q ss_pred             HHHHHHHHHHHhc-CcHHHHHHHHHHHHHcC
Q 010739          192 SMIEKVISLYWEM-EKKERAVLFVKAVLSRG  221 (502)
Q Consensus       192 ~~y~~li~~~~~~-g~~~~A~~l~~~m~~~~  221 (502)
                      ..+..+...|.+. |++++|.+.|++.....
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            8899999999999 99999999999987665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.27  E-value=0.0051  Score=47.19  Aligned_cols=97  Identities=9%  Similarity=-0.154  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .+..+...+...|++ +.|.+.|+...+....+...+..+...+.        ..|++++|...+++..+.. +.+...+
T Consensus         6 ~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~~~~~~-~~~~~~~   75 (118)
T 1elw_A            6 ELKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYA--------KKGDYQKAYEDGCKTVDLK-PDWGKGY   75 (118)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHhC-cccHHHH
Confidence            366777788899999 89999999998877457777777777666        8999999999999988753 3367889


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      ..+...|.+.|++++|.+.|++..+.+
T Consensus        76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           76 SRKAAALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            999999999999999999999987654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.26  E-value=0.0042  Score=50.91  Aligned_cols=96  Identities=9%  Similarity=-0.171  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +..+-..+.+.|++ +.|...|+........+...|..+-.++.        ..|++++|...|++..+.. +-+...|.
T Consensus        24 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~l~-p~~~~~~~   93 (148)
T 2vgx_A           24 LYSLAFNQYQSGXY-EDAHXVFQALCVLDHYDSRFFLGLGACRQ--------AMGQYDLAIHSYSYGAVMD-IXEPRFPF   93 (148)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHS-TTCTHHHH
T ss_pred             HHHHHHHHHHcCCh-HHHHHHHHHHHHcCcccHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence            56677788899999 89999999998887557888887777666        8999999999999988753 23567888


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .+-.+|...|++++|.+.|+...+..
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            99999999999999999999887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.24  E-value=0.0045  Score=50.60  Aligned_cols=96  Identities=14%  Similarity=0.011  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD----GDLYDIVLAICASQNEGSAVSRLLSRIEVM----NSLC-KKK  412 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~----~~~p-~~~  412 (502)
                      ++..+-..+...|++++|...+++..+..- .++    ...+..+-..+...|++++|.+.++.....    +..+ ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            556666666667777777777766543210 011    233444445666666666666666544322    1111 123


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          413 TLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       413 ~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                      .+..+...|...|++++|.+.+++..
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            44456666777777777777777654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.23  E-value=0.0048  Score=49.96  Aligned_cols=96  Identities=8%  Similarity=-0.159  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +..+-..+.+.|++ +.|...|+........+...|..+-.++.        ..|++++|...|+...+.. +-+...|.
T Consensus        21 ~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~   90 (142)
T 2xcb_A           21 LYALGFNQYQAGKW-DDAQKIFQALCMLDHYDARYFLGLGACRQ--------SLGLYEQALQSYSYGALMD-INEPRFPF   90 (142)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred             HHHHHHHHHHHccH-HHHHHHHHHHHHhCCccHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCcHHHH
Confidence            55566678889999 89999999999887557778887777666        8999999999999988764 33667888


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .+-.+|...|++++|.+.|+...+..
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            89999999999999999999887654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.20  E-value=0.019  Score=52.68  Aligned_cols=193  Identities=8%  Similarity=-0.107  Sum_probs=111.4

Q ss_pred             CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHH
Q 010739          268 EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHE  345 (502)
Q Consensus       268 ~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~  345 (502)
                      +...+..+-..+.+. |++++|...+.+..+.  .|+ ...+. .+-..|.+ |++++|.+.+++.....  +.+...|.
T Consensus         3 ~a~~~~~~g~~~~~~-g~~~~A~~~~~~al~~--~p~~~~~~~-~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLFVG-RKYPEAAACYGRAITR--NPLVAVYYT-NRALCYLKMQQPEQALADCRRALELD--GQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CSCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHH
T ss_pred             hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh--CCccHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence            345566666777777 7888888888777543  343 33333 45566777 88888888887766543  23445788


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKLVGKEADG-DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG  424 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  424 (502)
                      .+-.+|.+.|++++|...|++..+..  |+. ..+...+....+   ...+ .-+..........+......+ ..+ ..
T Consensus        77 ~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l-~~l-~~  148 (281)
T 2c2l_A           77 FLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYL-TRL-IA  148 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHH-HHH-HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHH-HHH-HH
Confidence            88888889999999999888876531  211 001111111111   0111 112223333333344443333 322 36


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhh
Q 010739          425 GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       425 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~  478 (502)
                      |+.++|.+.+++..+  ..|+......-+.+...  +..+..+++.++|....+
T Consensus       149 ~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~--~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          149 AERERELEECQRNHE--GHEDDGHIRAQQACIEA--KHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHH--HHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHhhhc--cccchhhhhhHHHHHHH--HHHHHHHHHHHHHHhhhc
Confidence            888899888887654  36766555444444432  113667888888876644

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.19  E-value=0.0067  Score=47.73  Aligned_cols=97  Identities=7%  Similarity=-0.074  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .|...-..+.+.|++ +.|++.|+...+....+...|..+-.++.        ..|++++|...+++..+.. +-+...|
T Consensus         6 ~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~   75 (126)
T 3upv_A            6 EARLEGKEYFTKSDW-PNAVKAYTEMIKRAPEDARGYSNRAAALA--------KLMSFPEAIADCNKAIEKD-PNFVRAY   75 (126)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHhC-CCcHHHH
Confidence            356666778899999 89999999999887557788888888777        8999999999999988863 3367889


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      ..+-.+|.+.|++++|...|++..+..
T Consensus        76 ~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           76 IRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            999999999999999999999887543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.14  E-value=0.0072  Score=52.05  Aligned_cols=98  Identities=10%  Similarity=-0.105  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      ..|..+-.+|.+.|++++|...+++..+.. ..+...+..+-.++...|++++|.+.++...... .-+...+..+...+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence            466667777777888888888887776542 2245566666677778888888888887766554 22455666666666


Q ss_pred             HhCCCHHHHH-HHHHHHHHCC
Q 010739          422 IKGGHINDAA-ETLTKMLDLG  441 (502)
Q Consensus       422 ~~~g~~~~A~-~l~~~m~~~g  441 (502)
                      ...++.+++. ..|..|...|
T Consensus       167 ~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            6666666665 4555555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.13  E-value=0.16  Score=47.74  Aligned_cols=133  Identities=12%  Similarity=0.165  Sum_probs=89.6

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc-cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 010739          125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER-GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE  203 (502)
Q Consensus       125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~  203 (502)
                      +.... ++|+++++.+.....-+...|+.--..+.        ..+ .+++++.+++.+....- -+..+|+.--..+.+
T Consensus        66 ~~e~s-e~AL~lt~~~L~~nP~~ytaWn~R~~iL~--------~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~  135 (349)
T 3q7a_A           66 KEEKS-ERALELTEIIVRMNPAHYTVWQYRFSLLT--------SLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDR  135 (349)
T ss_dssp             TTCCS-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHH
T ss_pred             hCCCC-HHHHHHHHHHHHhCchhHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence            34445 79999999999888446667776655444        455 69999999999998644 377888888777777


Q ss_pred             c-C-cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hCcHH--------HHHHHHHHHHHcCCCCC
Q 010739          204 M-E-KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EGKYV--------DAIKLVIHLRESGLKPE  268 (502)
Q Consensus       204 ~-g-~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g~~~--------~a~~~~~~m~~~g~~p~  268 (502)
                      . + +++++.++++.+.+.+              +.++..|++-.     -|.++        ++++.++++.+.. .-|
T Consensus       136 l~~~~~~~EL~~~~k~L~~d--------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N  200 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLPD--------------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRN  200 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSSC--------------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTC
T ss_pred             hcCCChHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCC
Confidence            6 7 8899999999998665              22335555432     23333        6666777666652 224


Q ss_pred             HhHHHHHHHHHHhc
Q 010739          269 VYSYLIALTAVVKE  282 (502)
Q Consensus       269 ~~ty~~li~~~~~~  282 (502)
                      ...|+.--..+.+.
T Consensus       201 ~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          201 NSAWGWRWYLRVSR  214 (349)
T ss_dssp             HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhc
Confidence            44555544444444

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.11  E-value=0.0072  Score=50.20  Aligned_cols=97  Identities=5%  Similarity=-0.138  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      .|..+-..+.+.|++ +.|++.|+...+...-+...|..+-.++.        ..|++++|+..|++..+.. +-+...|
T Consensus        13 ~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~   82 (164)
T 3sz7_A           13 KLKSEGNAAMARKEY-SKAIDLYTQALSIAPANPIYLSNRAAAYS--------ASGQHEKAAEDAELATVVD-PKYSKAW   82 (164)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCcCHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            377777888899999 89999999999887457788888888777        8999999999999988864 3368899


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      ..+-.+|.+.|++++|.+.|++..+..
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            999999999999999999999987654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.10  E-value=0.0091  Score=47.51  Aligned_cols=99  Identities=10%  Similarity=-0.122  Sum_probs=84.0

Q ss_pred             hhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHH
Q 010739          113 ARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFS  192 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  192 (502)
                      +..|..+-..+.+.|++ +.|...|+...+....+...|..+..++.        ..|++++|...+++..+.. +-+..
T Consensus         9 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~   78 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYL--------KMQQPEQALADCRRALELD-GQSVK   78 (137)
T ss_dssp             HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHHHHHHhCcH-HHHHHHHHHHHhhCcCcHHHHHHHHHHHH--------HhcCHHHHHHHHHHHHHhC-chhHH
Confidence            34477888889999999 89999999998887457778888877677        8999999999999988864 33678


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .|..+-..|.+.|++++|...|++..+..
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence            99999999999999999999999887654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.04  E-value=0.0054  Score=48.08  Aligned_cols=98  Identities=13%  Similarity=0.075  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCC--CCC--
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGL--KPG--  190 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~--~p~--  190 (502)
                      .|..+-..+.+.|++ +.|...|+...+....+...+..+...+.        ..|++++|...+++..+..-  .++  
T Consensus         6 ~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            6 KEKELGNDAYKKKDF-DTALKHYDKAKELDPTNMTYITNQAAVYF--------EKGDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHhcCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHH--------HhccHHHHHHHHHHHHhhccccchhHH
Confidence            467777888899999 89999999998877557777877777676        89999999999999877532  222  


Q ss_pred             --HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          191 --FSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       191 --~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                        ..+|..+...|.+.|++++|.+.|++..+..
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence              7788999999999999999999999988754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.01  E-value=0.0013  Score=51.30  Aligned_cols=59  Identities=10%  Similarity=-0.037  Sum_probs=30.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          380 DIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       380 ~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ..+-..+...|++++|.+.++....... -+...+..+..+|.+.|++++|.+.|++...
T Consensus        31 ~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           31 LGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3333444455555555555544444331 1344555555666666666666666665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.00  E-value=0.0059  Score=49.85  Aligned_cols=132  Identities=14%  Similarity=-0.013  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----H
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKE-AD----GDLYDIVLAICASQNEGSAVSRLLSRIEVMNS-LCK----K  411 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~-~p~----~  411 (502)
                      .++..+-..|...|++++|...+++..+..-. ++    ...+..+-..+...|++++|.+.++....... .++    .
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            47777888888899999999999887653111 12    13667777889999999999999976543221 112    4


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccccccccHHHHHHHHhhhh
Q 010739          412 KTLSWLLRGYIKGGHINDAAETLTKMLDL----GLYPE-YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       412 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~  477 (502)
                      ..+..+...|...|++++|.+.+++..+.    +-.+. ..++..+-..+..    .|+.++|...+++..
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHH
Confidence            45666888899999999999999987643    22111 2344555555555    689999999887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.96  E-value=0.0076  Score=47.32  Aligned_cols=96  Identities=10%  Similarity=-0.069  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +-.+-..+.+.|++ +.|+..|+...+...-+...|..+-.++.        ..|++++|+..|++..+..- -+...+.
T Consensus        20 ~~~~g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~--------~~g~~~~A~~~~~~al~l~P-~~~~~~~   89 (121)
T 1hxi_A           20 PMEEGLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQA--------ENEKDGLAIIALNHARMLDP-KDIAVHA   89 (121)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence            44455667788999 89999999999887447778877777666        89999999999999887532 3677899


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .+-..|.+.|++++|...|++..+..
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           90 ALAVSHTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999887543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.90  E-value=0.027  Score=44.05  Aligned_cols=90  Identities=10%  Similarity=-0.028  Sum_probs=52.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 010739          348 LAMYICAGRGLEAERQLWEMKLVGKEADG----DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCK---KKTLSWLLRG  420 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~---~~~~~~li~~  420 (502)
                      -..+.+.|++++|...|++..+..  |+.    ..+..+-.++...|++++|...++........ +   ...+..+...
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~   85 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence            344555666666666666655432  221    23444445566666666666666655544311 2   3455566677


Q ss_pred             HHhCCCHHHHHHHHHHHHHC
Q 010739          421 YIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       421 ~~~~g~~~~A~~l~~~m~~~  440 (502)
                      |.+.|++++|.+.|++..+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            77777777777777777654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.84  E-value=0.0043  Score=61.91  Aligned_cols=116  Identities=12%  Similarity=-0.083  Sum_probs=77.6

Q ss_pred             Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 010739          316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA  394 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~  394 (502)
                      |.+ |++++|.+.|++..+....  +...|..+-.+|.+.|++++|...+++..+.. .-+...|..+-.++...|++++
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            445 7888888888877766433  34578888888888888888888888877652 2245667777778888888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 010739          395 VSRLLSRIEVMNSLCKKKTLSWLLRG--YIKGGHINDAAETLT  435 (502)
Q Consensus       395 a~~l~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~  435 (502)
                      |.+.++....... -+...+..+-.+  +.+.|++++|.+.++
T Consensus        93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888877665542 133344444444  777788888888887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.83  E-value=0.015  Score=45.51  Aligned_cols=91  Identities=11%  Similarity=-0.038  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG  424 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~  424 (502)
                      .+-..+.+.|++++|...|++..+.  .| +...|..+-.++...|+.++|...++....... -+...+..+...|.+.
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            3444555666666666666665542  23 334444444566666666666666665555431 2445555666666677


Q ss_pred             CCHHHHHHHHHHHHH
Q 010739          425 GHINDAAETLTKMLD  439 (502)
Q Consensus       425 g~~~~A~~l~~~m~~  439 (502)
                      |++++|...|++.++
T Consensus        99 g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           99 HNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHH
Confidence            777777777766554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.79  E-value=0.021  Score=44.78  Aligned_cols=95  Identities=11%  Similarity=-0.094  Sum_probs=74.4

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCh---HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC---
Q 010739          117 QLVLVYFSQEGRDSWCALEVFEWLKKENRVDN---ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG---  190 (502)
Q Consensus       117 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~---  190 (502)
                      -.+-..+.+.|++ +.|.+.|+...+....+.   ..+..+-.++.        ..|++++|...|++..+..- -+   
T Consensus         6 ~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~--------~~~~~~~A~~~~~~~~~~~p-~~~~~   75 (129)
T 2xev_A            6 YNVAFDALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYY--------ATRNFQLAEAQFRDLVSRYP-THDKA   75 (129)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHCT-TSTTH
T ss_pred             HHHHHHHHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH--------HhccHHHHHHHHHHHHHHCC-CCccc
Confidence            3445567788999 899999999988762233   35555555555        89999999999999887532 23   


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      ...+..+-.+|.+.|++++|...|++..+..
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            6778889999999999999999999998765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.72  E-value=0.4  Score=45.06  Aligned_cols=113  Identities=10%  Similarity=0.068  Sum_probs=68.4

Q ss_pred             ccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH--
Q 010739          170 RGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEME-KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV--  246 (502)
Q Consensus       170 ~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g-~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~--  246 (502)
                      +.-++|+.+++++....- -+..+||.--..+...| ++++++++++.+...+              +.++-+|+.-.  
T Consensus        68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--------------PKny~aW~hR~wl  132 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--------------LKSYQVWHHRLLL  132 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--------------CCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------------CCcHHHHHHHHHH
Confidence            334456666666665422 24556777666667777 5999999999998776              22335555433  


Q ss_pred             ---h-C-cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHH--------HHHHHHHHHHHc
Q 010739          247 ---E-G-KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFG--------KALRKLKGYVRA  299 (502)
Q Consensus       247 ---~-g-~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~--------~a~~~~~~m~~~  299 (502)
                         . + ++++++++++.+.+. -.-|...|+.---.+.+. +..+        ++++.++++.+.
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l-~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLP-DPKNYHTWAYLHWLYSHF-STLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSS-CTTCHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHh
Confidence               2 5 778888888888754 222445555443344333 2233        666666666544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.62  E-value=0.022  Score=45.69  Aligned_cols=96  Identities=8%  Similarity=-0.095  Sum_probs=78.7

Q ss_pred             hHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC
Q 010739          115 ELQLVLVYFSQEGRDSWCALEVFEWLKKENRVD----NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG  190 (502)
Q Consensus       115 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~  190 (502)
                      .+..+-..+.+.|++ +.|.+.|+...+.. |+    ...|..+...+.        ..|++++|...+++..+.. +.+
T Consensus        30 ~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~~~~~~-~~~   98 (148)
T 2dba_A           30 QLRKEGNELFKCGDY-GGALAAYTQALGLD-ATPQDQAVLHRNRAACHL--------KLEDYDKAETEASKAIEKD-GGD   98 (148)
T ss_dssp             HHHHHHHHHHTTTCH-HHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHT-SCC
T ss_pred             HHHHHHHHHHHhCCH-HHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHH--------HHccHHHHHHHHHHHHhhC-ccC
Confidence            366677778889999 89999999998876 54    456666666565        8999999999999987753 336


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      ...|..+..+|.+.|++++|.+.|++..+..
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            7888999999999999999999999987654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.60  E-value=0.0033  Score=48.96  Aligned_cols=86  Identities=10%  Similarity=-0.024  Sum_probs=60.1

Q ss_pred             hhccHhhHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVG--LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g--~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~  244 (502)
                      ..|++++|+..|++..+.+  -+-+...|..+-..|.+.|++++|.+.|++..+..  |+. ..+..        +...+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~--------l~~~~   71 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVF--------YAMVL   71 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH--------HHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHH--------HHHHH
Confidence            4688999999999988864  23345788889999999999999999999988765  332 11211        44555


Q ss_pred             HHhCcHHHHHHHHHHHHHc
Q 010739          245 MVEGKYVDAIKLVIHLRES  263 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~  263 (502)
                      ...|++++|++.|++....
T Consensus        72 ~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           72 YNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            5578888888888877654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.58  E-value=0.014  Score=46.20  Aligned_cols=97  Identities=10%  Similarity=-0.020  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC--CCCC---
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG--LKPG---  190 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~---  190 (502)
                      +..+=..+.+.|++ +.|++.|+...+..+-+...|+.+-.++.        ..|++++|+..+++..+..  ..++   
T Consensus        11 ~~~lG~~~~~~~~~-~~A~~~y~~Al~~~p~~~~~~~nlg~~~~--------~~~~~~~A~~~~~~al~~~~~~~~~~~~   81 (127)
T 4gcn_A           11 EKDLGNAAYKQKDF-EKAHVHYDKAIELDPSNITFYNNKAAVYF--------EEKKFAECVQFCEKAVEVGRETRADYKL   81 (127)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHH--------HhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence            55666778899999 89999999999887457788888877777        8999999999999877632  1111   


Q ss_pred             -HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          191 -FSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       191 -~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                       ..+|..+-.+|...|++++|.+.|++..+..
T Consensus        82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence             2467888889999999999999999876643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.49  E-value=0.011  Score=58.79  Aligned_cols=124  Identities=9%  Similarity=-0.130  Sum_probs=82.3

Q ss_pred             Hhc-CcHHhHHHHHHHHHHcC---C--C-CchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC---CC---CCC-HHHHHH
Q 010739          316 YQS-DLLADGSRLSSWAIQEG---G--S-SLYGVVHERLLAMYICAGRGLEAERQLWEMKLV---GK---EAD-GDLYDI  381 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~---~--~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~---~p~-~~t~~~  381 (502)
                      +.. |++++|+.++++.....   .  . +.-..+++.|...|...|++++|+.++++..+-   -+   .|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            445 88888888887665432   1  1 123457888888888899999998888876542   12   222 346777


Q ss_pred             HHHHHHhcCChhHHHHHHHHHH-----HcCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          382 VLAICASQNEGSAVSRLLSRIE-----VMNS-LCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       382 li~~~~~~~~~~~a~~l~~~m~-----~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      |-..|...|++++|..+++...     ..|. .|+ ..+.+.+-.++...+.+++|..+|.++++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888875432     2332 222 33444566677777888888888888765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.47  E-value=0.11  Score=42.59  Aligned_cols=112  Identities=13%  Similarity=0.000  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CC---------CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLV-------GK---------EA-DGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~---------~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      ..+...-..+.+.|++++|...|.+..+.       .-         .| +...|..+-.++.+.|++++|...++....
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            35666667777788888888777776653       00         12 234566677788889999999998887776


Q ss_pred             cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 010739          405 MNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYM-DRVAVLQGL  456 (502)
Q Consensus       405 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~  456 (502)
                      .. ..+...|..+-.+|...|++++|...|++.+..  .|+.. .....+..+
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMKIV  141 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence            65 336778888999999999999999999987764  46544 444444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.38  E-value=0.072  Score=52.64  Aligned_cols=94  Identities=11%  Similarity=0.004  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEAD----------------GDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      .|..+-..|.+.|++++|...|++..+.  .|+                ...|..+-.++.+.|++++|...++......
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            4555555555666666666666655542  121                3455555566666666666666666555543


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                       ..+...|..+-.+|...|++++|...|++.++
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             22455555666666666666666666666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.36  E-value=0.018  Score=57.46  Aligned_cols=114  Identities=12%  Similarity=0.005  Sum_probs=84.9

Q ss_pred             HHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-Cc
Q 010739          244 MMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DL  320 (502)
Q Consensus       244 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~  320 (502)
                      +...|++++|++.|++..+.  .| +..+|..+-.++.+. +++++|++.+++..+.  .|+ ...+. .+-..|.. |+
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l--~p~~~~~~~-~lg~~~~~~g~   89 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIEL--DKKYIKGYY-RRAASNMALGK   89 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHS--CTTCHHHHH-HHHHHHHHHTC
T ss_pred             HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh--CCCCHHHHH-HHHHHHHHcCC
Confidence            34579999999999998876  44 478888899999999 8999999999988665  344 33443 46667888 99


Q ss_pred             HHhHHHHHHHHHHcCCCCchHhHHHHHHHH--HHHcCChHHHHHHHH
Q 010739          321 LADGSRLSSWAIQEGGSSLYGVVHERLLAM--YICAGRGLEAERQLW  365 (502)
Q Consensus       321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~  365 (502)
                      +++|.+.|++..+......+  .+..+-.+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999998887644444  55555555  888899999999988

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.29  E-value=0.18  Score=40.27  Aligned_cols=50  Identities=16%  Similarity=0.084  Sum_probs=27.3

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 010739          389 QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLG  441 (502)
Q Consensus       389 ~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g  441 (502)
                      .++.++|.+.++...+.|   +...+..|-..|..    .++.++|.+.|++..+.|
T Consensus        74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            345555555555444443   33444445555555    566666666666666655

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.26  E-value=0.042  Score=54.36  Aligned_cols=96  Identities=11%  Similarity=-0.077  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      ..|..+-.+|.+.|++++|+..+++..+.. .-+...|..+-.++...|++++|...|+...... .-+...+..+-..+
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            467777777788888888888888777642 2245666666677888888888888887776554 22455666677777


Q ss_pred             HhCCCHHHHHH-HHHHHHH
Q 010739          422 IKGGHINDAAE-TLTKMLD  439 (502)
Q Consensus       422 ~~~g~~~~A~~-l~~~m~~  439 (502)
                      .+.|+.++|.+ +++.|..
T Consensus       396 ~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          396 KKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            77777776653 4555543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.24  E-value=0.068  Score=51.17  Aligned_cols=97  Identities=8%  Similarity=-0.073  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLV--------------GKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNS  407 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~  407 (502)
                      .|..+-..+.+.|++++|...|++..+.              ...| +...|..+-.++.+.|++++|.+.++...... 
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  303 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  303 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence            5666777777888888888888776641              0222 34566667778888888888888888777654 


Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          408 LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      ..+...|..+-.+|.+.|++++|.+.|++..+.
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            235677777888888999999999999887764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.10  E-value=0.024  Score=56.41  Aligned_cols=127  Identities=12%  Similarity=-0.034  Sum_probs=89.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCC-CC-CHHHHH
Q 010739          350 MYICAGRGLEAERQLWEMKLV---GKEA----DGDLYDIVLAICASQNEGSAVSRLLSRIE-----VMNS-LC-KKKTLS  415 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~li~~~~~~~~~~~a~~l~~~m~-----~~~~-~p-~~~~~~  415 (502)
                      .+-..|++++|+.++++..+.   -+-|    ...+++.|...|...|++++|..+++...     ..|. .| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355689999999999887654   2223    24578889999999999999999986542     2332 23 245677


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHH-----CCC-CCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          416 WLLRGYIKGGHINDAAETLTKMLD-----LGL-YPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       416 ~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      .|-..|...|++++|..++++.++     .|- .|+......++..+.   ...++..+|...+..+.+.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~---~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE---MELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999998764     342 244444333343332   1267889999988887553

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.01  E-value=0.15  Score=41.80  Aligned_cols=110  Identities=11%  Similarity=-0.114  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 010739          344 HERLLAMYICAGRGLEAERQLWEMKLVGKEAD--------G-----DLYDIVLAICASQNEGSAVSRLLSRIEVM-----  405 (502)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~t~~~li~~~~~~~~~~~a~~l~~~m~~~-----  405 (502)
                      +...-..+.+.|++++|...|++..+.  .|+        .     ..|+.+-.++.+.|++++|...++.....     
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            344444455566666666666655432  222        1     25555556666666666666666555443     


Q ss_pred             CCCC-CHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHH
Q 010739          406 NSLC-KKKTL----SWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRVAVLQG  455 (502)
Q Consensus       406 ~~~p-~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~~  455 (502)
                      .+.| +...|    ...-.++...|++++|+..|++.++     .|+.+........+..
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~  151 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID  151 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            1234 34456    6777888889999999999998764     4566655554444443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.93  E-value=0.076  Score=40.67  Aligned_cols=80  Identities=8%  Similarity=-0.149  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 010739          132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAV  211 (502)
Q Consensus       132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~  211 (502)
                      .|++.|+...+....+...+..+-..+.        ..|++++|...|++..+.. +.+...|..+-..|.+.|++++|.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~--------~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA--------EHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH--------HccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence            5778888887776457778887777677        8999999999999988753 335778999999999999999999


Q ss_pred             HHHHHHHHc
Q 010739          212 LFVKAVLSR  220 (502)
Q Consensus       212 ~l~~~m~~~  220 (502)
                      ..|++..+.
T Consensus        74 ~~~~~al~~   82 (115)
T 2kat_A           74 QAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999987653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=95.78  E-value=0.076  Score=50.84  Aligned_cols=90  Identities=11%  Similarity=-0.116  Sum_probs=62.2

Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL  418 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li  418 (502)
                      +...|+.+-.+|.+.|++++|...+++..+.  .| +...|..+-.++...|++++|.+.++....... -+...+..+-
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~  348 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence            3457777777888888888888888887753  34 455666666788888888888888877766541 2455556666


Q ss_pred             HHHHhCCCHHHHHH
Q 010739          419 RGYIKGGHINDAAE  432 (502)
Q Consensus       419 ~~~~~~g~~~~A~~  432 (502)
                      ..+.+.++.+++.+
T Consensus       349 ~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          349 KVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666665543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=95.72  E-value=0.073  Score=43.76  Aligned_cols=96  Identities=8%  Similarity=-0.098  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHc------------------CCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKE------------------NRVDNETMELMVSIMCSWVKKYIEEERGVGDVVD  177 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~------------------~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~  177 (502)
                      +...-..+.+.|++ +.|++.|....+.                  ...+...|..+-.++.        +.|++++|+.
T Consensus        14 ~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--------~~~~~~~A~~   84 (162)
T 3rkv_A           14 LRQKGNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL--------NIGDLHEAEE   84 (162)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH--------HHTCHHHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH--------hcCcHHHHHH
Confidence            55566677788888 7999988887765                  1112345665555555        8999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          178 LLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       178 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .++...+.. +.+...|..+-.+|...|++++|...|++..+..
T Consensus        85 ~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           85 TSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            999988863 3467899999999999999999999999987764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.59  E-value=0.39  Score=38.30  Aligned_cols=81  Identities=10%  Similarity=-0.159  Sum_probs=37.8

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS----QN  390 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~  390 (502)
                      +.+++|.+.|++..+.+.+    ..+..|-..|..    .++.++|+..|++-.+.|   +...+..+-..|..    .+
T Consensus        39 ~~~~~A~~~~~~Aa~~g~~----~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~  111 (138)
T 1klx_A           39 INKQKLFQYLSKACELNSG----NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK  111 (138)
T ss_dssp             SCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CCHHHHHHHHHHHHcCCCH----HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence            4444455555444444321    244444444444    455555555555555443   23333333344444    45


Q ss_pred             ChhHHHHHHHHHHHcC
Q 010739          391 EGSAVSRLLSRIEVMN  406 (502)
Q Consensus       391 ~~~~a~~l~~~m~~~~  406 (502)
                      +.++|.+.++...+.|
T Consensus       112 d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          112 NEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCC
Confidence            5555555555544444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.48  E-value=0.25  Score=35.37  Aligned_cols=59  Identities=10%  Similarity=-0.035  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      .|..+-..+.+.|++++|...|++..+.. ..+...+..+-..+...|++++|.+.++..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44444444445555555555555444321 112233333333444444444444444333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.35  E-value=0.051  Score=51.32  Aligned_cols=95  Identities=12%  Similarity=-0.003  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739          378 LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR  457 (502)
Q Consensus       378 t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~  457 (502)
                      .|..+-.++.+.|++++|...++...... ..+...|..+-.+|...|++++|...|++..+  +.|+.......+..+.
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~  308 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALA  308 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence            56666677888888888888887776654 23677777888888888888888888888654  3354333322233221


Q ss_pred             ccccccccHHHHHHHHhhhh
Q 010739          458 KRIQQSGNVEAYLNLCKRLS  477 (502)
Q Consensus       458 ~~~~~~~~~~~a~~~~~~m~  477 (502)
                      .  ...+..+.+...+..|.
T Consensus       309 ~--~~~~~~~~a~~~~~~~l  326 (338)
T 2if4_A          309 E--QEKALYQKQKEMYKGIF  326 (338)
T ss_dssp             --------------------
T ss_pred             H--HHHHHHHHHHHHHHHhh
Confidence            1  01344555555655553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.33  E-value=0.08  Score=39.55  Aligned_cols=56  Identities=13%  Similarity=-0.069  Sum_probs=35.9

Q ss_pred             HHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          312 LIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       312 li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      +-..|.+ |++++|.+.|++.........+  .|..+-.+|.+.|++++|...|++..+
T Consensus        13 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~--a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A           13 LAQEHLKHDNASRALALFEELVETDPDYVG--TYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCTH--HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4444555 7777777777766665543333  666677777777777777777766543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.25  E-value=1.2  Score=47.18  Aligned_cols=151  Identities=15%  Similarity=0.069  Sum_probs=99.4

Q ss_pred             HHhCcHHHHHH-HHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739          245 MVEGKYVDAIK-LVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       245 ~~~g~~~~a~~-~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~  322 (502)
                      +..+++++|.+ ++..     + |+......++..+.+. +..++|+++.++-         .    .-...... |+++
T Consensus       610 ~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~-~~~~~a~~~~~~~---------~----~~f~~~l~~~~~~  669 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQ-EYYEEALNISPDQ---------D----QKFELALKVGQLT  669 (814)
T ss_dssp             HHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHT-TCHHHHHHHCCCH---------H----HHHHHHHHHTCHH
T ss_pred             HHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhC-CChHHheecCCCc---------c----hheehhhhcCCHH
Confidence            44688888877 5522     1 1122236677777778 7888887755321         1    12233445 9999


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                      +|+++.+.     ..  +...|..+-..+.+.|+++.|.+.|.++..         |..+...+...|+.+...++-+..
T Consensus       670 ~A~~~~~~-----~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          670 LARDLLTD-----ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHTT-----CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHh-----hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence            99997532     22  345999999999999999999999998863         445555666677777766665555


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 010739          403 EVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKM  437 (502)
Q Consensus       403 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  437 (502)
                      ...|      -++.-...|.+.|++++|.+++.++
T Consensus       734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            5544      2344455566677777777777654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.22  E-value=0.14  Score=39.14  Aligned_cols=26  Identities=15%  Similarity=-0.111  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      .|..+-..|.+.|++++|...|++..
T Consensus        21 ~~~~lg~~~~~~g~~~~A~~~~~~al   46 (115)
T 2kat_A           21 LRFTLGKTYAEHEQFDAALPHLRAAL   46 (115)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            44444444444555555554444444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.041  Score=41.60  Aligned_cols=62  Identities=11%  Similarity=-0.111  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          378 LYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       378 t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      .+..+-..+...|++++|.+.++...... ..+...+..+-..|.+.|++++|.+.|++.++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            33444444555555555555555444433 124455555666666666666666666666543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.04  E-value=0.11  Score=39.04  Aligned_cols=54  Identities=11%  Similarity=-0.084  Sum_probs=30.1

Q ss_pred             HHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          314 EKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       314 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      ..+.. |++++|.+.|++........  ...|..+-.+|.+.|++++|...+++..+
T Consensus        12 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A           12 NSLFKQGLYREAVHCYDQLITAQPQN--PVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            33444 66666666665555443222  23555666666666666666666666553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.93  E-value=0.074  Score=50.20  Aligned_cols=127  Identities=6%  Similarity=-0.124  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChH------------------HHHHHHHHHhhhhhhhhhhhccHhhHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNE------------------TMELMVSIMCSWVKKYIEEERGVGDVVD  177 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------------------~~~~li~~~~~~~~~~~~~~~~~~~a~~  177 (502)
                      +..+-..+.+.|++ +.|...|+...+.. |+..                  .|..+-.++.        +.|++++|+.
T Consensus       182 ~~~~g~~~~~~g~~-~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~--------~~g~~~~A~~  251 (338)
T 2if4_A          182 RKMDGNSLFKEEKL-EEAMQQYEMAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLI--------KLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHTCSSSCC-HHHHHHHHHHHHHS-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH--------TTTCCHHHHH
T ss_pred             HHHHHHHHHhcCCH-HHHHHHHHHHHHHh-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHH--------HcCCHHHHHH
Confidence            55666677788999 89999999987665 3222                  5555555555        8999999999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cccccCCCCchHHHHH-HHHhCcHHHHHH
Q 010739          178 LLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DGEGQQGGPTGYLAWK-MMVEGKYVDAIK  255 (502)
Q Consensus       178 ~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty~~~~~~~~~~~~~~-~~~~g~~~~a~~  255 (502)
                      .+++..+.. +-+...|..+-.+|...|++++|...|++..+..  |+.. .+..        +... ....+..+++.+
T Consensus       252 ~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~--------L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          252 HCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRE--------LRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence            999988753 3467899999999999999999999999876443  3321 1111        1111 123466777777


Q ss_pred             HHHHHHHc
Q 010739          256 LVIHLRES  263 (502)
Q Consensus       256 ~~~~m~~~  263 (502)
                      +|..|...
T Consensus       321 ~~~~~l~~  328 (338)
T 2if4_A          321 MYKGIFKG  328 (338)
T ss_dssp             --------
T ss_pred             HHHHhhCC
Confidence            88777643

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.78  E-value=1.2  Score=41.96  Aligned_cols=38  Identities=16%  Similarity=-0.072  Sum_probs=24.3

Q ss_pred             CCCCHhHHHHHHHHHHhc----cccHHHHHHHHHHHHHcCCCCc
Q 010739          265 LKPEVYSYLIALTAVVKE----LNEFGKALRKLKGYVRAGSIAE  304 (502)
Q Consensus       265 ~~p~~~ty~~li~~~~~~----~~~~~~a~~~~~~m~~~g~~p~  304 (502)
                      .+.+...|...+.+....    ..+..+|..+|++-++.  +|+
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~  231 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE  231 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC
Confidence            456777788888776543    13467788877777543  454

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.72  E-value=0.41  Score=39.25  Aligned_cols=53  Identities=15%  Similarity=0.061  Sum_probs=26.5

Q ss_pred             Hhc-CcHHhHHHHHHHHHHc----C-CCCchHhHH----HHHHHHHHHcCChHHHHHHHHHHH
Q 010739          316 YQS-DLLADGSRLSSWAIQE----G-GSSLYGVVH----ERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~----~-~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      +.+ |++++|+..+++.+..    + ..+.+...|    ...-.++...|++++|+..|++..
T Consensus        67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            444 5555555544444432    1 122333455    555556666666666666666544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.54  E-value=0.27  Score=36.49  Aligned_cols=54  Identities=15%  Similarity=0.090  Sum_probs=25.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 010739          384 AICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKML  438 (502)
Q Consensus       384 ~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  438 (502)
                      ..+...|++++|.+.++....... .+...|..+-.+|.+.|++++|.+.|++.+
T Consensus        15 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A           15 QEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444444444444444333321 133344455555555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.47  E-value=2.6  Score=42.71  Aligned_cols=151  Identities=12%  Similarity=0.036  Sum_probs=103.9

Q ss_pred             HHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc----------HhhHHHHHHHHhhCCCCCCHH
Q 010739          123 FSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG----------VGDVVDLLVDMDCVGLKPGFS  192 (502)
Q Consensus       123 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~  192 (502)
                      ..+.|..+++|++.++.+.....-+...|+.--.++.        ..++          +++++.+++.+.+..-+ +..
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~--------~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~  108 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQ--------HLETEKSPEESAALVKAELGFLESCLRVNPK-SYG  108 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH--------hcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHH
Confidence            3445556589999999999888446667776544333        3344          89999999999886443 778


Q ss_pred             HHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hC-cHHHHHHHHHHHHHcC
Q 010739          193 MIEKVISLYWEME--KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EG-KYVDAIKLVIHLRESG  264 (502)
Q Consensus       193 ~y~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g-~~~~a~~~~~~m~~~g  264 (502)
                      +|+.--..+.+.|  +++++.+.++.+.+.+.              .++..|++-.     .| .++++++.++++.+..
T Consensus       109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~--------------~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          109 TWHHRCWLLSRLPEPNWARELELCARFLEADE--------------RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT--------------TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHhhcc--------------ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence            8888888888889  77999999999998762              2235555432     46 7889999888887652


Q ss_pred             CCCCHhHHHHHHHHHHhcc-------------ccHHHHHHHHHHHH
Q 010739          265 LKPEVYSYLIALTAVVKEL-------------NEFGKALRKLKGYV  297 (502)
Q Consensus       265 ~~p~~~ty~~li~~~~~~~-------------~~~~~a~~~~~~m~  297 (502)
                       .-|...|+..-..+.+..             +.++++++.+++..
T Consensus       175 -p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai  219 (567)
T 1dce_A          175 -FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF  219 (567)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred             -CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHH
Confidence             235566666555555520             34566666665553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.47  E-value=0.4  Score=34.20  Aligned_cols=78  Identities=5%  Similarity=-0.059  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIE  195 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~  195 (502)
                      +..+-..+.+.|++ +.|...|+...+....+...+..+-..+.        ..|++++|...|++..+.. +-+...+.
T Consensus        12 ~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~--------~~~~~~~A~~~~~~a~~~~-p~~~~~~~   81 (91)
T 1na3_A           12 WYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYY--------KQGDYDEAIEYYQKALELD-PNNAEAKQ   81 (91)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHhcC-CCCHHHHH
Confidence            55556666777777 68888887777665345566666666555        6778888888777776642 22445555


Q ss_pred             HHHHHHHh
Q 010739          196 KVISLYWE  203 (502)
Q Consensus       196 ~li~~~~~  203 (502)
                      .+-..+.+
T Consensus        82 ~l~~~~~~   89 (91)
T 1na3_A           82 NLGNAKQK   89 (91)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.43  E-value=0.45  Score=50.43  Aligned_cols=150  Identities=15%  Similarity=0.058  Sum_probs=89.7

Q ss_pred             hhccHhhHHH-HHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH
Q 010739          168 EERGVGDVVD-LLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV  246 (502)
Q Consensus       168 ~~~~~~~a~~-~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~  246 (502)
                      ..+++++|.+ ++..     ++ +......++..+.+.|.++.|.++.++-..                    -..-.+.
T Consensus       611 ~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------------~f~~~l~  664 (814)
T 3mkq_A          611 LRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------------KFELALK  664 (814)
T ss_dssp             HTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------------HHHHHHH
T ss_pred             HhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcch--------------------heehhhh
Confidence            4678888876 5422     11 122347888888899999998877643211                    1233345


Q ss_pred             hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHH
Q 010739          247 EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGS  325 (502)
Q Consensus       247 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~  325 (502)
                      .|++++|+++.+.+      .+...|..+-..+.+. ++++.|.+.|..+.+.         . .+...|.. |+.+...
T Consensus       665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~-~~~~~A~~~y~~~~d~---------~-~l~~l~~~~~~~~~~~  727 (814)
T 3mkq_A          665 VGQLTLARDLLTDE------SAEMKWRALGDASLQR-FNFKLAIEAFTNAHDL---------E-SLFLLHSSFNNKEGLV  727 (814)
T ss_dssp             HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTCH---------H-HHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc-CCHHHHHHHHHHccCh---------h-hhHHHHHHcCCHHHHH
Confidence            68999998886543      4667888888888888 7888888877765211         1 24444444 5555544


Q ss_pred             HHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010739          326 RLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEM  367 (502)
Q Consensus       326 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  367 (502)
                      ++-+.....+       -++....+|.+.|++++|.+++.++
T Consensus       728 ~~~~~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          728 TLAKDAETTG-------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHcC-------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4433333322       2233334455566666666555443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.39  E-value=0.24  Score=48.34  Aligned_cols=92  Identities=8%  Similarity=-0.062  Sum_probs=62.9

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHH-----HcCC-CC-CHHH
Q 010739          348 LAMYICAGRGLEAERQLWEMKLVG---KEAD----GDLYDIVLAICASQNEGSAVSRLLSRIE-----VMNS-LC-KKKT  413 (502)
Q Consensus       348 i~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~t~~~li~~~~~~~~~~~a~~l~~~m~-----~~~~-~p-~~~~  413 (502)
                      +..+.+.|++++|+.++++..+..   +.|+    ..+++.+..+|...|++++|..+++...     ..|. .| ...+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            444556777888888877776431   2222    3467777778888888888888776442     2331 23 2456


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          414 LSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       414 ~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ++.|-..|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77788899999999999999988654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=94.36  E-value=0.16  Score=49.54  Aligned_cols=50  Identities=4%  Similarity=-0.133  Sum_probs=31.8

Q ss_pred             CcHHhHHHHHHHHHHcC-----CC-CchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          319 DLLADGSRLSSWAIQEG-----GS-SLYGVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                      |++++|+.++++.....     .. +.-..+++.|...|...|++++|+.++++..
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            67777777776655422     11 1123467777777777777777777777654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=93.84  E-value=4.2  Score=37.82  Aligned_cols=143  Identities=10%  Similarity=0.021  Sum_probs=92.1

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhh---hhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHH
Q 010739          122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKY---IEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVI  198 (502)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li  198 (502)
                      ...+.|..+++|+++++.+.....-+...||.--..+.. +..-   ......+++++.+++.+....- -+..+|+.--
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~  115 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRC  115 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence            345667776899999999998873455667654443321 1000   0001227888999998887533 3778888877


Q ss_pred             HHHHhcC--cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHH-----hCc-HHHHHHHHHHHHHcCCCCCHh
Q 010739          199 SLYWEME--KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMV-----EGK-YVDAIKLVIHLRESGLKPEVY  270 (502)
Q Consensus       199 ~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~-----~g~-~~~a~~~~~~m~~~g~~p~~~  270 (502)
                      ..+.+.|  +++++..+++.+.+.+              +.++..|++-.     .|. ++++++.++.+.... .-|..
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~d--------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~S  180 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEAD--------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYS  180 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHH
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHH
Confidence            7777878  4899999999998876              22335555433     366 688888888888763 23455


Q ss_pred             HHHHHHHHHHh
Q 010739          271 SYLIALTAVVK  281 (502)
Q Consensus       271 ty~~li~~~~~  281 (502)
                      .|+..-..+.+
T Consensus       181 AW~~R~~ll~~  191 (331)
T 3dss_A          181 SWHYRSCLLPQ  191 (331)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55554444433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.63  E-value=2.1  Score=33.70  Aligned_cols=137  Identities=12%  Similarity=0.098  Sum_probs=80.6

Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhc-CcHH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~-g~~~  322 (502)
                      ...|.+++..++..+....   -+..-||.+|.-.... -+-+-..++++.. .-..+.+-.-.-  .++..|.+ |.. 
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~-a~C~y~v~vLd~IGkiFDis~C~NlK--rVi~C~~~~n~~-   90 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLES-IDCRYMFQVLDKIGSYFDLDKCQNLK--SVVECGVINNTL-   90 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHH-CCHHHHHHHHHHHGGGSCGGGCSCTH--HHHHHHHHTTCC-
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchh-hchhHHHHHHHHHhhhcCcHhhhcHH--HHHHHHHHhcch-
Confidence            4568999999998887765   3566788888877777 5677666665554 212221111110  23444433 211 


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                                        ....+..++.+...|+-++-.+++.++.. ..+|+....-.+-.+|.+.|+..++.+++.+.
T Consensus        91 ------------------se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           91 ------------------NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             ------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence                              12445556666677777777777766432 34555566666666777777777776666666


Q ss_pred             HHcCC
Q 010739          403 EVMNS  407 (502)
Q Consensus       403 ~~~~~  407 (502)
                      -+.|.
T Consensus       152 C~kG~  156 (172)
T 1wy6_A          152 CKKGE  156 (172)
T ss_dssp             HHTTC
T ss_pred             HHhhh
Confidence            55554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=93.45  E-value=0.33  Score=47.32  Aligned_cols=90  Identities=11%  Similarity=0.030  Sum_probs=54.8

Q ss_pred             CcHHHHHHHHHHHHHc---CCC---CC-HhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCc
Q 010739          248 GKYVDAIKLVIHLRES---GLK---PE-VYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDL  320 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~---g~~---p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~  320 (502)
                      |++++|+.++++....   -+.   |+ ..+++.+..+|... |++++|+.++++....                     
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i---------------------  369 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKP---------------------  369 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH---------------------
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHH---------------------
Confidence            6777887777765542   122   22 35677777777777 6777777766654211                     


Q ss_pred             HHhHHHHHHHHHHcC-CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010739          321 LADGSRLSSWAIQEG-GSSLYGVVHERLLAMYICAGRGLEAERQLWEMK  368 (502)
Q Consensus       321 ~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  368 (502)
                             ++  ...| ..+....+|+.|-..|...|++++|+.++++..
T Consensus       370 -------~~--~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          370 -------YS--KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             -------HH--HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------HH--HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence                   00  0112 111223577888888888888888888887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=93.42  E-value=0.21  Score=40.96  Aligned_cols=91  Identities=10%  Similarity=-0.015  Sum_probs=69.5

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhcc----------HhhHHHHHHHHhhCCCCCCHHH
Q 010739          124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERG----------VGDVVDLLVDMDCVGLKPGFSM  193 (502)
Q Consensus       124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~  193 (502)
                      .|.+.+ ++|.+.++...+...-+...|+.+-.++.        ..++          +++|+..|++..+..-. +...
T Consensus        13 ~r~~~f-eeA~~~~~~Ai~l~P~~aea~~n~G~~l~--------~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A   82 (158)
T 1zu2_A           13 DRILLF-EQIRQDAENTYKSNPLDADNLTRWGGVLL--------ELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEA   82 (158)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             HHHhHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHH--------HhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHH
Confidence            344557 78999999998888557888887766665        4443          56999999998885322 5678


Q ss_pred             HHHHHHHHHhcC-----------cHHHHHHHHHHHHHcCCCCCC
Q 010739          194 IEKVISLYWEME-----------KKERAVLFVKAVLSRGIAYAE  226 (502)
Q Consensus       194 y~~li~~~~~~g-----------~~~~A~~l~~~m~~~~~~p~~  226 (502)
                      |..+-.+|...|           ++++|.+.|++..+.+  |+.
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~  124 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDN  124 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCC
Confidence            999999998874           8999999999988765  553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=93.37  E-value=0.33  Score=39.76  Aligned_cols=109  Identities=7%  Similarity=-0.045  Sum_probs=61.2

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      +.+++|.+.+++.+.......+  .|+.+-.++.+.++++.+.+-.+                         .+++|...
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~ae--a~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~~   68 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDAD--NLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAITK   68 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHHH
Confidence            5677777777777766544433  66666666666655442221111                         13444444


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKG-----------GHINDAAETLTKMLDLGLYPEYMDRVAVLQGLR  457 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~  457 (502)
                      |+....... -+...|..+-.+|...           |++++|.+.|++.++.  .|+...|...+..+-
T Consensus        69 le~AL~ldP-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~  135 (158)
T 1zu2_A           69 FEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA  135 (158)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCc-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence            444444331 1344444555555443           5788888888887763  577766666655553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.28  E-value=2.6  Score=42.66  Aligned_cols=116  Identities=4%  Similarity=-0.140  Sum_probs=74.6

Q ss_pred             HHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHH
Q 010739          321 LADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAG--RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN-EGSAVSR  397 (502)
Q Consensus       321 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~-~~~~a~~  397 (502)
                      ++++.+.++.+........  .+|+.---.+.+.|  +++++++.++++.+...+ |...|+---..+.+.| ..+++.+
T Consensus        89 ~~~eL~~~~~~l~~~pK~y--~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~  165 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSY--GTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA  165 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence            6777777777666554443  36666666666667  568888888887765422 5666666666666667 6777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHC
Q 010739          398 LLSRIEVMNSLCKKKTLSWLLRGYIKG--------------GHINDAAETLTKMLDL  440 (502)
Q Consensus       398 l~~~m~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~  440 (502)
                      .++.+.+.... |...|+..-..+.+.              +.+++|++.+++.+..
T Consensus       166 ~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            77666655422 566666644444431              4578888888887764

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.16  E-value=2.5  Score=33.24  Aligned_cols=67  Identities=16%  Similarity=0.102  Sum_probs=43.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010739          375 DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGL  442 (502)
Q Consensus       375 ~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  442 (502)
                      +...++..++.....|.-++..++...+.. +..|+....-.+-.+|.+-|+..+|.+++.+.-+.|+
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            444556666666777777776666666432 4456666666677777777777777777777666665

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.78  E-value=1.9  Score=35.88  Aligned_cols=123  Identities=12%  Similarity=0.096  Sum_probs=87.0

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRL  398 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l  398 (502)
                      |+++.|.++.+.+       .+...|..|-....+.|+++-|.+.|.+...         |..+.-.|...|+.+...++
T Consensus        19 g~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           19 GNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             TCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             CCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            8999998887654       2346999999999999999999999998762         45566666677888876666


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhh
Q 010739          399 LSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRL  476 (502)
Q Consensus       399 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m  476 (502)
                      -+.....|      -++.-...+.-.|+++++.++|.+   .|--|....     -+  +.   .|--+.|.++.+++
T Consensus        83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~-----~A--~t---~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA-----VA--KA---NGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH-----HH--HH---TTCHHHHHHHHHHT
T ss_pred             HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH-----HH--HH---cCcHHHHHHHHHHh
Confidence            65555555      356667777888999999999865   343332221     11  11   46667777777665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=92.75  E-value=1.9  Score=40.64  Aligned_cols=150  Identities=7%  Similarity=-0.132  Sum_probs=88.5

Q ss_pred             hhhHHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhh-CC
Q 010739          113 ARELQLVLVYFSQEG-----RDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDC-VG  186 (502)
Q Consensus       113 ~~~~~~ll~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~-~g  186 (502)
                      +..|...+.+.....     .. .+|.++|++..+...-....|..+.-++...................-++.... ..
T Consensus       194 ~~Aydl~Lra~~~l~~~~~~~~-~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~  272 (372)
T 3ly7_A          194 GALLTNFYQAHDYLLHGDDKSL-NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE  272 (372)
T ss_dssp             GGGHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence            445777776655432     23 588999999998872244455543333331111000001111111111221111 12


Q ss_pred             CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCC
Q 010739          187 LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLK  266 (502)
Q Consensus       187 ~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~  266 (502)
                      .+.+..+|.++--.+.-.|++++|...+++..+.+  |+...|..        +-+.....|++++|.+.|++-...  .
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~l--------lG~~~~~~G~~~eA~e~~~~AlrL--~  340 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVL--------LGKVYEMKGMNREAADAYLTAFNL--R  340 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHH--------HHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence            35577888888777777899999999999998887  66444433        455556689999999999876654  6


Q ss_pred             CCHhHHHHH
Q 010739          267 PEVYSYLIA  275 (502)
Q Consensus       267 p~~~ty~~l  275 (502)
                      |...||...
T Consensus       341 P~~~t~~~~  349 (372)
T 3ly7_A          341 PGANTLYWI  349 (372)
T ss_dssp             CSHHHHHHH
T ss_pred             CCcChHHHH
Confidence            776666443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=92.38  E-value=0.58  Score=45.61  Aligned_cols=94  Identities=7%  Similarity=-0.109  Sum_probs=71.6

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcC----CC-Ch---HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC---
Q 010739          117 QLVLVYFSQEGRDSWCALEVFEWLKKEN----RV-DN---ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV---  185 (502)
Q Consensus       117 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~----~~-~~---~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~---  185 (502)
                      ...+..+.+.|++ ++|+++++...+..    .+ ++   .+++.+...+.        ..|++++|..++++..+.   
T Consensus       291 l~~ie~~~~~g~~-~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~--------~~g~~~eA~~~~~~~L~i~~~  361 (429)
T 3qwp_A          291 LKKIEELKAHWKW-EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI--------NLGLLEEALFYGTRTMEPYRI  361 (429)
T ss_dssp             HHHHHHHHHTTCH-HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccH-HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH--------hhccHHHHHHHHHHHHHhHHH
Confidence            3446667788999 89999999887542    22 22   36777777666        899999999999987653   


Q ss_pred             --C-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 010739          186 --G-LKPG-FSMIEKVISLYWEMEKKERAVLFVKAVLS  219 (502)
Q Consensus       186 --g-~~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~  219 (502)
                        | -.|+ ..+|+.|-..|...|++++|+.++++..+
T Consensus       362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence              2 2333 36899999999999999999999987753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=91.25  E-value=2  Score=34.67  Aligned_cols=81  Identities=12%  Similarity=0.033  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHH
Q 010739          358 LEAERQLWEMKLVGKEADGDLYDIVLAICASQN---EGSAVSRLLSRIEVMNSLC--KKKTLSWLLRGYIKGGHINDAAE  432 (502)
Q Consensus       358 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~---~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~  432 (502)
                      ..+.+-|.+....|- ++..+--.+-.++++++   +++++..+++...... .|  +...+-.|--+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            445555555555444 56665555566666666   5557777777766654 23  34455557777888888888888


Q ss_pred             HHHHHHHC
Q 010739          433 TLTKMLDL  440 (502)
Q Consensus       433 l~~~m~~~  440 (502)
                      .++..++.
T Consensus        93 y~~~lL~i  100 (152)
T 1pc2_A           93 YVRGLLQT  100 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88887763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=90.81  E-value=5.9  Score=35.22  Aligned_cols=203  Identities=14%  Similarity=0.088  Sum_probs=95.4

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHH---HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFS---MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~---~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~  244 (502)
                      +.|+++.+..+++    .|..++..   .-.+.+...++.|+.+-+    +.+.+.|..|+....+.     .+ .+..+
T Consensus        14 ~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g-----~t-~L~~A   79 (285)
T 1wdy_A           14 QNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNG-----AT-PFLLA   79 (285)
T ss_dssp             HTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTC-----CC-HHHHH
T ss_pred             HcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCC-----CC-HHHHH
Confidence            6788776666554    44433321   112455566777876544    44456676666433221     11 45555


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-------------ch
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVY---SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-------------GK  308 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~---ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------------~~  308 (502)
                      +..|+.+    +++.+.+.|..++..   -++.+ ...+.. +..+-    ++.+.+.|..++..             ..
T Consensus        80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~-~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~  149 (285)
T 1wdy_A           80 AIAGSVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVY-GKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGA  149 (285)
T ss_dssp             HHHTCHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHT-TCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred             HHcCCHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHh-CCHHH----HHHHHHhCCCcccccccHHHHHhhccCCC
Confidence            5667754    444455566665532   22333 334444 44443    33445566655433             11


Q ss_pred             HHHHHHHHhcCcHHhHHHHHHHHHHcCC--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHH
Q 010739          309 NLGLIEKYQSDLLADGSRLSSWAIQEGG--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDL--YDIVLA  384 (502)
Q Consensus       309 ~~~li~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~  384 (502)
                      + .|..+...|+.+-+..+++.   .+.  ...+...++ .+...+..|......++++.+.+.|..++...  -.+.+.
T Consensus       150 t-~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~  224 (285)
T 1wdy_A          150 T-ALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRN-ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             C-HHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCC-HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             c-HHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCC-HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            1 34444444666555444321   121  111111222 23333445555555566666666766554321  123344


Q ss_pred             HHHhcCChhHHHHHH
Q 010739          385 ICASQNEGSAVSRLL  399 (502)
Q Consensus       385 ~~~~~~~~~~a~~l~  399 (502)
                      ..+..|+.+-+..++
T Consensus       225 ~A~~~~~~~~v~~Ll  239 (285)
T 1wdy_A          225 LAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHTTCHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHH
Confidence            444456555544333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=90.60  E-value=11  Score=35.04  Aligned_cols=181  Identities=9%  Similarity=0.032  Sum_probs=103.0

Q ss_pred             hccH-hhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHcCCCCCCccccccCCCCc
Q 010739          169 ERGV-GDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK----------KERAVLFVKAVLSRGIAYAEGDGEGQQGGPT  237 (502)
Q Consensus       169 ~~~~-~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~  237 (502)
                      .|.+ ++|+.+++.+....- -+..+||.-=..+...|+          ++++..+++.+...+              |.
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--------------PK  106 (331)
T 3dss_A           42 AGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--------------PK  106 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------TT
T ss_pred             cCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--------------CC
Confidence            3444 478888888877432 234455543333333222          678888888888765              22


Q ss_pred             hHHHHHHHH-----hC--cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc-HHHHHHHHHHHHHcCCCCchhchH
Q 010739          238 GYLAWKMMV-----EG--KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE-FGKALRKLKGYVRAGSIAELDGKN  309 (502)
Q Consensus       238 ~~~~~~~~~-----~g--~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~  309 (502)
                      ++-+|++-.     -|  .+++++++++.+.+.. .-|...|+.---.+.+. +. .+++++.++.+++.... |...++
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~-N~SAW~  183 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS-NYSSWH  183 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSC-CHHHHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCC-CHHHHH
Confidence            335554433     35  4889999999988762 33556666665566666 45 68888888888655322 222222


Q ss_pred             --HHHHHHHhc------------CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc-----------CChHHHHHHH
Q 010739          310 --LGLIEKYQS------------DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA-----------GRGLEAERQL  364 (502)
Q Consensus       310 --~~li~~~~~------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~  364 (502)
                        ..++.....            +.++++++.+..........  ...|+-+-..+.+.           +.++++++.+
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d--~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~  261 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND--QSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC  261 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence              123333311            34667777777666654333  34665544444443           3455666666


Q ss_pred             HHHHH
Q 010739          365 WEMKL  369 (502)
Q Consensus       365 ~~m~~  369 (502)
                      +++.+
T Consensus       262 ~elle  266 (331)
T 3dss_A          262 KELQE  266 (331)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=90.22  E-value=1.5  Score=31.88  Aligned_cols=56  Identities=13%  Similarity=0.012  Sum_probs=40.9

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCChH-HHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhC
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKENRVDNE-TMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCV  185 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~  185 (502)
                      ..+.+.|++ +.|.+.|+...+....+.. .|..+-.++.        ..|++++|...|++..+.
T Consensus         8 ~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~--------~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            8 KELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYR--------KLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHhc
Confidence            445667788 7888888888777634556 6666666555        788888888888887765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=90.15  E-value=2.5  Score=30.55  Aligned_cols=52  Identities=13%  Similarity=0.110  Sum_probs=25.2

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          387 ASQNEGSAVSRLLSRIEVMNSLCKKK-TLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       387 ~~~~~~~~a~~l~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ...|++++|.+.++...... ..+.. .+..+-..|...|++++|.+.|++..+
T Consensus        11 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34445555555554444332 11233 444455555555555555555555544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.13  E-value=7.1  Score=32.36  Aligned_cols=100  Identities=12%  Similarity=0.032  Sum_probs=71.4

Q ss_pred             HHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 010739          124 SQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE  203 (502)
Q Consensus       124 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~  203 (502)
                      .+.|++ +.|.++.+.+     -+...|..|-..+.        ..|+++-|.+.|.....         +..+.=.|.-
T Consensus        16 L~lg~l-~~A~e~a~~l-----~~~~~Wk~Lg~~AL--------~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~   72 (177)
T 3mkq_B           16 LEYGNL-DAALDEAKKL-----NDSITWERLIQEAL--------AQGNASLAEMIYQTQHS---------FDKLSFLYLV   72 (177)
T ss_dssp             HHTTCH-HHHHHHHHHH-----CCHHHHHHHHHHHH--------HTTCHHHHHHHHHHTTC---------HHHHHHHHHH
T ss_pred             HhcCCH-HHHHHHHHHh-----CCHHHHHHHHHHHH--------HcCChHHHHHHHHHhCC---------HHHHHHHHHH
Confidence            345778 7888887766     46778998888777        88999999998887654         5566666777


Q ss_pred             cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHH
Q 010739          204 MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHL  260 (502)
Q Consensus       204 ~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m  260 (502)
                      .|+.+...++-+.-..+|      .++        ....+++..|+++++.++|.+.
T Consensus        73 tg~~e~L~kla~iA~~~g------~~n--------~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           73 TGDVNKLSKMQNIAQTRE------DFG--------SMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HTCHHHHHHHHHHHHHTT------CHH--------HHHHHHHHHTCHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHHHCc------cHH--------HHHHHHHHcCCHHHHHHHHHHC
Confidence            888877776665555554      111        2455566679999999888543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=88.91  E-value=3.7  Score=33.16  Aligned_cols=81  Identities=14%  Similarity=0.114  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhc---cHhhHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCc
Q 010739          132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEER---GVGDVVDLLVDMDCVGLKP--GFSMIEKVISLYWEMEK  206 (502)
Q Consensus       132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~y~~li~~~~~~g~  206 (502)
                      .+.+-|.+....+.++..+--.+--+++        +.+   ++++++.+|++..+.+ .|  +...+=.|--+|.+.|+
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv--------~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~   86 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLV--------RSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE   86 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHH--------TCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence            4444555555556556654443333355        555   8889999999998875 24  23333345556699999


Q ss_pred             HHHHHHHHHHHHHcC
Q 010739          207 KERAVLFVKAVLSRG  221 (502)
Q Consensus       207 ~~~A~~l~~~m~~~~  221 (502)
                      +++|.+.++...+..
T Consensus        87 Y~~A~~y~~~lL~ie  101 (152)
T 1pc2_A           87 YEKALKYVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998765

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.63  E-value=9.8  Score=39.63  Aligned_cols=128  Identities=11%  Similarity=-0.074  Sum_probs=80.8

Q ss_pred             CchHHHHHHHH----hCc-HHHHHHHHHHHHHcCCCCCHhH-H-HHHHHHHHhccccHHHHHHHHHHHHHc------CCC
Q 010739          236 PTGYLAWKMMV----EGK-YVDAIKLVIHLRESGLKPEVYS-Y-LIALTAVVKELNEFGKALRKLKGYVRA------GSI  302 (502)
Q Consensus       236 ~~~~~~~~~~~----~g~-~~~a~~~~~~m~~~g~~p~~~t-y-~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~  302 (502)
                      ..++++.+.++    .|+ ++.|.++|+++...  .|...+ | ..+|..+.+.+.+--+|.+++++..+.      ...
T Consensus       246 v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~  323 (754)
T 4gns_B          246 VNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLP  323 (754)
T ss_dssp             SSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ccHHHHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhc
Confidence            33456555554    355 68899999999887  343322 2 334444444423455677777666421      122


Q ss_pred             Cchh------chHHHHHHH----Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010739          303 AELD------GKNLGLIEK----YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEM  367 (502)
Q Consensus       303 p~~~------~~~~~li~~----~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  367 (502)
                      +...      .+...|+..    +.+ |+++-|+++-++.+.....  +-.+|-.|...|.+.|+++.|+-.++.+
T Consensus       324 ~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          324 PRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            1110      111123322    444 9999999998887765443  4569999999999999999999998887

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=88.02  E-value=3.2  Score=30.85  Aligned_cols=54  Identities=11%  Similarity=0.023  Sum_probs=45.6

Q ss_pred             hhccHhhHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          168 EERGVGDVVDLLVDMDCVG------LKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g------~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      +.+++..|..+|+...+.-      -.+....|..|..+|.+.|+++.|...+++..+..
T Consensus        17 ~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A           17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            8899999999999876631      23467889999999999999999999999987654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=87.72  E-value=4  Score=36.96  Aligned_cols=66  Identities=18%  Similarity=0.137  Sum_probs=33.2

Q ss_pred             HhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCC
Q 010739          341 GVVHERLLAMYICA-----GRGLEAERQLWEMKLVGKEA--DGDLYDIVLAICASQ-NEGSAVSRLLSRIEVMNSL  408 (502)
Q Consensus       341 ~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~-~~~~~a~~l~~~m~~~~~~  408 (502)
                      ...|..+...|.+.     |+.++|...|++-.+-  .|  +..++...-+.++.. |+.+++.+.++........
T Consensus       199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            34555555555552     5566666666555542  23  234444444444442 5555555555555444433

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=87.52  E-value=2.5  Score=37.76  Aligned_cols=109  Identities=10%  Similarity=-0.018  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCc-cc--cccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHh-
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYAEG-DG--EGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVY-  270 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-ty--~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-  270 (502)
                      ++.+...++.|+++.+..++    +.|..++.. ..  .+        .+..++..|+.+    +++.+.+.|..|+.. 
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t--------~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~   69 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWT--------PLHNAVQMSRED----IVELLLRHGADPVLRK   69 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCC--------HHHHHHHTTCHH----HHHHHHHTTCCTTCCC
T ss_pred             chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCc--------HHHHHHHcCCHH----HHHHHHHcCCCCcccC
Confidence            34556668888877555554    556555433 11  12        456666677764    444455566665532 


Q ss_pred             --HHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh---chHHHHHHHHhcCcHHhHHH
Q 010739          271 --SYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD---GKNLGLIEKYQSDLLADGSR  326 (502)
Q Consensus       271 --ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~~li~~~~~g~~~~a~~  326 (502)
                        -.+.+ ...+.. +..+-    ++.+.+.|..++..   ..+ .+..+...|+.+-+..
T Consensus        70 ~~g~t~L-~~A~~~-~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A           70 KNGATPF-LLAAIA-GSVKL----LKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKF  123 (285)
T ss_dssp             TTCCCHH-HHHHHH-TCHHH----HHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHH
T ss_pred             CCCCCHH-HHHHHc-CCHHH----HHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHH
Confidence              22333 333444 34443    34445566655432   222 3444444465544333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=86.65  E-value=7.4  Score=28.24  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=41.2

Q ss_pred             CHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          375 DGDLYDIVLAICASQNE---GSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       375 ~~~t~~~li~~~~~~~~---~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                      |...+..+-.++...++   .++|..+++...... .-+......+-..+.+.|++++|...|+++.+..
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            33444444444433333   567777777666654 2255566667777788888888888888887654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.18  E-value=22  Score=32.46  Aligned_cols=167  Identities=11%  Similarity=0.013  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHH----HHHHHHHcCCCCC
Q 010739          193 MIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIK----LVIHLRESGLKPE  268 (502)
Q Consensus       193 ~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~----~~~~m~~~g~~p~  268 (502)
                      .|.++..-|.+.+++++|.+++.+=                       ...+...|+...|-+    +.+...+.++++|
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~   91 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQG-----------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD   91 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH-----------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence            5778888899999999999987543                       344445566555554    4666667799999


Q ss_pred             HhHHHHHHHHHHhccccHHHHHHHHHHHH----HcCCC--CchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchH
Q 010739          269 VYSYLIALTAVVKELNEFGKALRKLKGYV----RAGSI--AELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYG  341 (502)
Q Consensus       269 ~~ty~~li~~~~~~~~~~~~a~~~~~~m~----~~g~~--p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~  341 (502)
                      .....-++..+...+.....-.+++++++    +.|-.  -+..... .+-..|.+ |++.+|+..|-    .+. ..|.
T Consensus        92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~-~~a~~~~~e~~~~~A~~H~i----~~~-~~s~  165 (312)
T 2wpv_A           92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHN-TIGSKLLEGDFVYEAERYFM----LGT-HDSM  165 (312)
T ss_dssp             HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHH-HHHHHHHHTTCHHHHHHHHH----TSC-HHHH
T ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHH----hCC-CccH
Confidence            98888888877664211111233344442    23221  2333333 46666788 99999999772    111 1134


Q ss_pred             hHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010739          342 VVHERLLAMYICA---GRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIE  403 (502)
Q Consensus       342 ~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~  403 (502)
                      ..+..++.-+.+.   |...++--+.              -.++|..+ ..+++..|..+++...
T Consensus       166 ~~~a~~l~~w~~~~~~~~~~e~dlf~--------------~RaVL~yL-~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          166 IKYVDLLWDWLCQVDDIEDSTVAEFF--------------SRLVFNYL-FISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHH--------------HHHHHHHH-HTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHH--------------HHHHHHHH-HhcCHHHHHHHHHHHH
Confidence            4666655555554   5544432222              22333333 4578888888886543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=84.74  E-value=10  Score=36.03  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=46.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 010739          381 IVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDRVAV  452 (502)
Q Consensus       381 ~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l  452 (502)
                      .++.++...|+.+++...+..+.... ..+...|..+|.+|.+.|+..+|++.|++..+     .|+.|...+-...
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            34455556677777776666665443 33666777788888888888888777777653     3777777764433

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=83.56  E-value=7.6  Score=28.68  Aligned_cols=60  Identities=13%  Similarity=0.194  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      ++.+-++.+....+.|+.....+.+.+|-+..++..|.++++..+..- .+...+|.++++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            444555555555666666666666666666666666666666665433 222334555544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=83.44  E-value=9.7  Score=28.06  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=20.5

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          410 KKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      ....+..|..+|.+.|++++|...+++...
T Consensus        45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            455666677777777777777777777654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=83.17  E-value=3.9  Score=30.23  Aligned_cols=51  Identities=12%  Similarity=0.131  Sum_probs=44.4

Q ss_pred             cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          171 GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       171 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      +.-+..+-++.+-...+.|+..+..+.+++|-|.+|+..|.++|+..+.+-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~   75 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   75 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            455667777777788899999999999999999999999999999998553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=83.03  E-value=11  Score=32.37  Aligned_cols=62  Identities=10%  Similarity=-0.044  Sum_probs=33.5

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCC
Q 010739          197 VISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPE  268 (502)
Q Consensus       197 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~  268 (502)
                      .+...++.|+.+-+..+++.+.+.+..++......     .+ .+..++..|+.+    +++.+.+.|..|+
T Consensus        12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g-----~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~   73 (241)
T 1k1a_A           12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR-----QT-PLHLAVITTLPS----VVRLLVTAGASPM   73 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS-----CC-HHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC-----CC-HHHHHHHcCCHH----HHHHHHHcCCCcc
Confidence            34455677777777777777766666655433211     01 344455556654    3334444555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=82.94  E-value=8.2  Score=27.99  Aligned_cols=70  Identities=9%  Similarity=-0.019  Sum_probs=50.9

Q ss_pred             CChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          146 VDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       146 ~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      .|+..+..+-.++..     .......++|..+|++..+..- -+......+-..+.+.|++++|...|+.+.+.+
T Consensus         4 ~~~~~~~~~a~al~~-----~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            4 VTATQLAAKATTLYY-----LHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCHHHHHHHHHHHHH-----TTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            355666666555541     0012236899999999888532 366778888899999999999999999998776

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=82.76  E-value=12  Score=33.75  Aligned_cols=91  Identities=11%  Similarity=-0.009  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHH
Q 010739          358 LEAERQLWEMKLVGKEAD---GDLYDIVLAICAS-----QNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKG-GHIN  428 (502)
Q Consensus       358 ~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~-----~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~  428 (502)
                      .+|...+++..+  +.|+   ...|..+-..|.+     .|+.+.|.+.|+.....+-.-+..++...-..+++. |+.+
T Consensus       180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            456666666554  4666   4567777788888     499999999999888876333477888889999985 9999


Q ss_pred             HHHHHHHHHHHCCCC--CCHHHHH
Q 010739          429 DAAETLTKMLDLGLY--PEYMDRV  450 (502)
Q Consensus       429 ~A~~l~~~m~~~g~~--p~~~t~~  450 (502)
                      +|.+.+++.+....+  |+....+
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHHH
Confidence            999999999998877  7754433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=82.00  E-value=8.8  Score=29.77  Aligned_cols=83  Identities=12%  Similarity=0.012  Sum_probs=52.3

Q ss_pred             ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHH
Q 010739          356 RGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA---VSRLLSRIEVMNSLC--KKKTLSWLLRGYIKGGHINDA  430 (502)
Q Consensus       356 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~---a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A  430 (502)
                      ....+.+-|.+....|. |+..+--.+-.++.++.+...   +..+++.....+ .|  .....-.|--|+.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            34455555555555444 555555555566666666554   777777765543 23  333344477788899999999


Q ss_pred             HHHHHHHHHC
Q 010739          431 AETLTKMLDL  440 (502)
Q Consensus       431 ~~l~~~m~~~  440 (502)
                      .+.++.+++.
T Consensus        94 ~~~~~~lL~~  103 (126)
T 1nzn_A           94 LKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9998888764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=81.58  E-value=19  Score=28.92  Aligned_cols=114  Identities=11%  Similarity=-0.047  Sum_probs=68.2

Q ss_pred             hHhHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHH---HHHHhcCChhHHHHHHHHHHHcC
Q 010739          340 YGVVHERLLAMYICAGRG------LEAERQLWEMKLVGKEADGD----LYDIVL---AICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~li---~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      |..+|-..+.-.-+.|+.      ++..++|++... .++|+..    .|.-+.   ..+...+++++|.++|+.+...+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            334666666666666777      677777776654 3445321    111111   12233378899999998886553


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          407 SLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       407 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      ..- ...|-..-+-=.+.|++++|.+++.+-+..+.+|. ..+.+.+.-+
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl  138 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL  138 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence            332 33433344444578999999999999888776543 3444444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	502
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.68
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.62
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.2
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.1
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.68
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.63
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.52
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.36
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.16
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.04
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.92
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.88
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.81
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.75
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.5
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.47
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.23
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.22
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.21
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.17
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.14
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.13
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.06
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.04
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.96
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.95
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.93
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.76
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.74
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.2
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	95.89
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.75
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	95.22
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.96
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	94.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	94.66
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	93.8
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.75
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	93.05
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.01
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.03
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	89.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	88.17
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	85.95
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	83.26
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	83.18
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	81.23

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.6e-13  Score=126.35  Aligned_cols=365  Identities=13%  Similarity=0.013  Sum_probs=241.4

Q ss_pred             HHHHHHHHHhhc-CChHHHHHHHhcccChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh
Q 010739           86 FFEAIEELERMT-REPSDILEEMNDRLSARELQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKK  164 (502)
Q Consensus        86 ~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~  164 (502)
                      +++|++.++++. ..|.          .+..+..+-..+.+.|++ ++|.+.|+...+..+-+..+|..+...+.     
T Consensus        15 ~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~a~~~l~~~~~-----   78 (388)
T d1w3ba_          15 FEAAERHCMQLWRQEPD----------NTGVLLLLSSIHFQCRRL-DRSAHFSTLAIKQNPLLAEAYSNLGNVYK-----   78 (388)
T ss_dssp             HHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHhh-----
Confidence            666666666654 2332          123355556666666777 67777777766655335556666666555     


Q ss_pred             hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH
Q 010739          165 YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM  244 (502)
Q Consensus       165 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~  244 (502)
                         ..|++++|...+....+... .+...+..........+....+..................+         ......
T Consensus        79 ---~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  145 (388)
T d1w3ba_          79 ---ERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS---------DLGNLL  145 (388)
T ss_dssp             ---HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH---------HHHHHH
T ss_pred             ---hhcccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc---------cccccc
Confidence               66777777777766665433 23334444444444444444444444444333322111000         022223


Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-chHHHHHHHHhc-CcHH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-GKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~~li~~~~~-g~~~  322 (502)
                      ...+....+...+....... +-+...+..+...+... ++.++|...+.+..+.  .|+.. .+. .+...+.. |+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~-~l~~~~~~~~~~~  220 (388)
T d1w3ba_         146 KALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTL--DPNFLDAYI-NLGNVLKEARIFD  220 (388)
T ss_dssp             HTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHTTTCTT
T ss_pred             cccchhhhhHHHHHHhhccC-cchhHHHHhhccccccc-CcHHHHHHHHHHHHHh--CcccHHHHH-HHhhhhhccccHH
Confidence            33577777777777766542 22345666677777777 7899999999887553  34433 333 56677888 9999


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      +|...+++.........  ..+..+...+.+.|++++|...|++..+.  .| +...+..+...+...|+.++|.+.++.
T Consensus       221 ~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~  296 (388)
T d1w3ba_         221 RAVAAYLRALSLSPNHA--VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNT  296 (388)
T ss_dssp             HHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhhhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            99999998887665543  48888889999999999999999998764  34 456788888999999999999999988


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccccccccHHHHHHHHhhhhhcC
Q 010739          402 IEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPE-YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTS  480 (502)
Q Consensus       402 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~  480 (502)
                      ..... ..+...+..+...|.+.|++++|.+.|++.++.  .|+ ..++..+-..+..    .|+.++|...+++..+..
T Consensus       297 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         297 ALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTC
T ss_pred             hhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            76654 456778888999999999999999999998764  454 4556666667766    799999999998875422


Q ss_pred             C----chhHHHHHHHhhcc
Q 010739          481 L----IGPCLVYLYIKKYK  495 (502)
Q Consensus       481 ~----~~~~li~~y~~~g~  495 (502)
                      .    ....+-.+|.+.||
T Consensus       370 P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         370 PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHcCC
Confidence            1    22334455555543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.9e-12  Score=121.27  Aligned_cols=348  Identities=11%  Similarity=-0.048  Sum_probs=253.1

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISL  200 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~  200 (502)
                      ..+-+.|++ +.|.+.|+.+.+..+-+...+..+...+.        +.|++++|...|++..+.. +-+..+|..+...
T Consensus         7 ~~~~~~G~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~   76 (388)
T d1w3ba_           7 HREYQAGDF-EAAERHCMQLWRQEPDNTGVLLLLSSIHF--------QCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNV   76 (388)
T ss_dssp             HHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            456678999 89999999998877346777887777666        8999999999999988753 3357889999999


Q ss_pred             HHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010739          201 YWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVV  280 (502)
Q Consensus       201 ~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~  280 (502)
                      |.+.|++++|.+.+....+.........+         .........+....+................ ..........
T Consensus        77 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  146 (388)
T d1w3ba_          77 YKERGQLQEAIEHYRHALRLKPDFIDGYI---------NLAAALVAAGDMEGAVQAYVSALQYNPDLYC-VRSDLGNLLK  146 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHH---------HHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH-HHHHHHHHHH
T ss_pred             hhhhccccccccccccccccccccccccc---------ccccccccccccccccccccccccccccccc-cccccccccc
Confidence            99999999999999999876522111000         0222222335555555555555544333333 3333444444


Q ss_pred             hccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHH
Q 010739          281 KELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLE  359 (502)
Q Consensus       281 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~  359 (502)
                      .. +....+...+......  .|+.......+...+.. |+.++|...+++.......  +...|..+...+...|++++
T Consensus       147 ~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~  221 (388)
T d1w3ba_         147 AL-GRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--FLDAYINLGNVLKEARIFDR  221 (388)
T ss_dssp             TT-SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCTTH
T ss_pred             cc-chhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc--cHHHHHHHhhhhhccccHHH
Confidence            44 5677777766666433  24333322246666777 9999999999988776533  34588999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          360 AERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       360 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      |...+++..... ..+...+..+-..+.+.|++++|.+.++...... .-+...+..+...|...|++++|.+.++....
T Consensus       222 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  299 (388)
T d1w3ba_         222 AVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR  299 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc
Confidence            999999988754 3356677777889999999999999998887654 23577888899999999999999999998876


Q ss_pred             CCCCCCHHHHHHHHHHHHccccccccHHHHHHHHhhhhhcCC----chhHHHHHHHhhcchhhhh
Q 010739          440 LGLYPEYMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDTSL----IGPCLVYLYIKKYKLWIIK  500 (502)
Q Consensus       440 ~g~~p~~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~li~~y~~~g~~~~~~  500 (502)
                      .. +.+...+..+...+..    .|+.++|+..+++..+...    ....+-..|.+.|+++.+.
T Consensus       300 ~~-~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         300 LC-PTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             cC-CccchhhhHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            43 4566677777777776    7999999999988754321    3344667888888877653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.7e-08  Score=93.50  Aligned_cols=230  Identities=12%  Similarity=-0.020  Sum_probs=151.5

Q ss_pred             HHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010739          122 YFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLY  201 (502)
Q Consensus       122 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~  201 (502)
                      .+.+.|++ +.|+..|+...+..+-+...|..+..++.        ..|++++|...|++..+.. +-+...|..+...|
T Consensus        28 ~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~   97 (323)
T d1fcha_          28 RRLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQA--------ENEQELLAISALRRCLELK-PDNQTALMALAVSF   97 (323)
T ss_dssp             HHHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------HcCChHHHHHHHHhhhccc-cccccccccccccc
Confidence            45678999 89999999999887447788888888777        8999999999999987753 23678899999999


Q ss_pred             HhcCcHHHHHHHHHHHHHcCCCCCCccccccCC-------C-CchHHHHHHHHhCcHHHHHHHHHHHHHcC-CCCCHhHH
Q 010739          202 WEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQG-------G-PTGYLAWKMMVEGKYVDAIKLVIHLRESG-LKPEVYSY  272 (502)
Q Consensus       202 ~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~-------~-~~~~~~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~ty  272 (502)
                      .+.|++++|.+.+++.....  |+.........       . ............+.+.+|.+.|.+..... -.++..++
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~  175 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  175 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             cccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccc
Confidence            99999999999999987654  32211111000       0 00001222233466677777776655432 23345566


Q ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHH
Q 010739          273 LIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAM  350 (502)
Q Consensus       273 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  350 (502)
                      ..+-..+... |++++|...+++....  .|+ ...+. .+-..|.+ |++++|.+.|++..+....  +..+|..+...
T Consensus       176 ~~l~~~~~~~-~~~~~A~~~~~~al~~--~p~~~~~~~-~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~  249 (323)
T d1fcha_         176 CGLGVLFNLS-GEYDKAVDCFTAALSV--RPNDYLLWN-KLGATLANGNQSEEAVAAYRRALELQPG--YIRSRYNLGIS  249 (323)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred             hhhHHHHHHH-HHHhhhhccccccccc--ccccccchh-hhhhcccccccchhHHHHHHHHHHHhhc--cHHHHHHHHHH
Confidence            6666666676 6777777777776443  233 22232 34555666 7777777777776654322  33467777777


Q ss_pred             HHHcCChHHHHHHHHHHHH
Q 010739          351 YICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       351 ~~~~g~~~~A~~l~~~m~~  369 (502)
                      |.+.|++++|...|++..+
T Consensus       250 ~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         250 CINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            7777777777777776554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.4e-08  Score=90.65  Aligned_cols=227  Identities=17%  Similarity=0.057  Sum_probs=169.8

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHH
Q 010739          197 VISLYWEMEKKERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLI  274 (502)
Q Consensus       197 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~  274 (502)
                      .-..+.+.|++++|.+.|++..+..  |+. ..|..        +...+...|++++|+..|.+..+.  .| +...|..
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~--------lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~   92 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQY--------LGTTQAENEQELLAISALRRCLEL--KPDNQTALMA   92 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHH--------HHHHHHHcCChHHHHHHHHhhhcc--cccccccccc
Confidence            3445779999999999999998765  442 22322        455556679999999999998765  34 4577778


Q ss_pred             HHHHHHhccccHHHHHHHHHHHHHcCCC-CchhchH------------HHHHHHHhc-CcHHhHHHHHHHHHHcCCCCch
Q 010739          275 ALTAVVKELNEFGKALRKLKGYVRAGSI-AELDGKN------------LGLIEKYQS-DLLADGSRLSSWAIQEGGSSLY  340 (502)
Q Consensus       275 li~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~------------~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~  340 (502)
                      +...+... +++++|.+.+.......-. .......            ...+..+.+ +...+|.+.|.+.........+
T Consensus        93 la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~  171 (323)
T d1fcha_          93 LAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID  171 (323)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC
T ss_pred             cccccccc-ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            88889999 8999999999887543211 1100000            011222344 7788899988887776655555


Q ss_pred             HhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          341 GVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       341 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      ...+..+-..+...|++++|...|++....  .| +...|..+-..+...|++++|.+.++...... .-+...|..+..
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~  248 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGI  248 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHH
Confidence            668888888999999999999999998764  34 46677778889999999999999998877654 225777888999


Q ss_pred             HHHhCCCHHHHHHHHHHHHH
Q 010739          420 GYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       420 ~~~~~g~~~~A~~l~~~m~~  439 (502)
                      .|.+.|++++|.+.|++.++
T Consensus       249 ~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         249 SCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998775

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=3.3e-06  Score=77.24  Aligned_cols=222  Identities=9%  Similarity=-0.061  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhh-------hhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 010739          132 CALEVFEWLKKENRVDNETMELMVSIMCSWVKK-------YIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEM  204 (502)
Q Consensus       132 ~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~-------~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~  204 (502)
                      .+..+|++.......++..|-..+. +......       .....+..++|..+|+...+...+-+...|...+..+-+.
T Consensus        34 Rv~~vyerAl~~~~~~~~lW~~y~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~  112 (308)
T d2onda1          34 RVMFAYEQCLLVLGHHPDIWYEAAQ-YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHH-HHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            4555666666554335555554444 2210000       0003455677888888877655555666777788888888


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCCc--cccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHh
Q 010739          205 EKKERAVLFVKAVLSRGIAYAEG--DGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTA-VVK  281 (502)
Q Consensus       205 g~~~~A~~l~~~m~~~~~~p~~~--ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~-~~~  281 (502)
                      |+++.|..+|+.+.+..  |...  .|..        .+......|+.++|.++|+.....+.. +...|...... +..
T Consensus       113 ~~~~~a~~i~~~~l~~~--~~~~~~~w~~--------~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~  181 (308)
T d2onda1         113 MKYEKVHSIYNRLLAIE--DIDPTLVYIQ--------YMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYC  181 (308)
T ss_dssp             TCHHHHHHHHHHHHTSS--SSCTHHHHHH--------HHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHh--cCChHHHHHH--------HHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence            88888888888876533  2210  1111        122222246666666666665544211 11222111111 111


Q ss_pred             ccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCC-CC-chHhHHHHHHHHHHHcCChH
Q 010739          282 ELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGG-SS-LYGVVHERLLAMYICAGRGL  358 (502)
Q Consensus       282 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~-~~-~~~~~~~~li~~~~~~g~~~  358 (502)
                      . ++.+.|..+|+...+.  .|+...+....+....+ |+++.|..+|++...... ++ .....|...+.--.+.|+.+
T Consensus       182 ~-~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~  258 (308)
T d2onda1         182 S-KDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             S-CCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             c-cCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence            2 4556666666555332  12222211244455445 555555555555544431 11 11234554444444455555


Q ss_pred             HHHHHHHHHH
Q 010739          359 EAERQLWEMK  368 (502)
Q Consensus       359 ~A~~l~~~m~  368 (502)
                      .+..+++++.
T Consensus       259 ~~~~~~~r~~  268 (308)
T d2onda1         259 SILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=3.2e-06  Score=77.39  Aligned_cols=186  Identities=10%  Similarity=-0.034  Sum_probs=90.3

Q ss_pred             cHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHH
Q 010739          249 KYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRL  327 (502)
Q Consensus       249 ~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~  327 (502)
                      ..++|.++|++-.+...+-+...|...+....+. ++.+.|..+++.+.+.........|. ..+....+ |+++.|.++
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~-~~~~~a~~i~~~~l~~~~~~~~~~w~-~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTLVYI-QYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSSSSCTHHHHH-HHHHHHHHHHCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHcCChHHHHHH
Confidence            3344555555444332222333444444444444 45555555555554322111111222 34444545 555555555


Q ss_pred             HHHHHHcCCCCchHhHHHHHHH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          328 SSWAIQEGGSSLYGVVHERLLA-MYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       328 ~~~m~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      |++..........  .|..... -+...|+.+.|..+|+.+... ..-+...|...+..+...|+++.|..+|+......
T Consensus       157 ~~~al~~~~~~~~--~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         157 FKKAREDARTRHH--VYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHTSTTCCTH--HHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhCCCcHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            5555544433333  2221111 122245666666666666543 22234556666666666666666666665544332


Q ss_pred             -CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          407 -SLCK--KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       407 -~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                       ..|+  ...|...+.--...|+.+.+.++++++.+
T Consensus       234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             2332  23555556555566777777776666644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.3e-05  Score=72.10  Aligned_cols=267  Identities=9%  Similarity=-0.063  Sum_probs=148.3

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcCCCCh-----HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCC----CC-CC
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKENRVDN-----ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVG----LK-PG  190 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g----~~-p~  190 (502)
                      ..+...|++ +.|+++++...+....+.     ..++.+-..+.        ..|++++|...|++..+..    -. ..
T Consensus        20 ~~~~~~g~~-~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~--------~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          20 QVAINDGNP-DEAERLAKLALEELPPGWFYSRIVATSVLGEVLH--------CKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCH-HHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            445788999 899999999887652221     23444444444        7899999999999876532    11 12


Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC---CCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcC---
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRG---IAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESG---  264 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g---  264 (502)
                      ...+..+...+...|++..+...+.+.....   ..+.......    ....+...+...|+++.+...+.......   
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~----~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF----LVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHH----HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence            3567778888999999999999998765421   1111000000    00002233344689999999888877652   


Q ss_pred             -CCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH--cCCCCch---hchHHHHHHHHhc-CcHHhHHHHHHHHHHcC--
Q 010739          265 -LKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR--AGSIAEL---DGKNLGLIEKYQS-DLLADGSRLSSWAIQEG--  335 (502)
Q Consensus       265 -~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~---~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~--  335 (502)
                       ......++......+... ++...+...+.+...  .......   ......+...+.. |+.++|...+.......  
T Consensus       167 ~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  245 (366)
T d1hz4a_         167 QPQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA  245 (366)
T ss_dssp             CGGGGHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred             hhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence             222234444455555555 677777776665522  1111111   1111122233444 77777777665543332  


Q ss_pred             CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHH
Q 010739          336 GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL----VGKEADG-DLYDIVLAICASQNEGSAVSRLLSR  401 (502)
Q Consensus       336 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~li~~~~~~~~~~~a~~l~~~  401 (502)
                      .+......+..+...+...|++++|...+++...    .+..|+. ..+..+-..+...|+.++|.+.++.
T Consensus       246 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            1222233445556666667777777766666542    2333332 2333333555566666666665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=3.1e-05  Score=71.15  Aligned_cols=262  Identities=10%  Similarity=-0.045  Sum_probs=172.2

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCC-CCC----ccccccCCCCch
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPG----FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIA-YAE----GDGEGQQGGPTG  238 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~----~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~----~ty~~~~~~~~~  238 (502)
                      ..|++++|..++++..+..-..+    ...++.+-..|...|++++|...|++..+..-. ++.    ..+..       
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~-------   96 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ-------   96 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-------
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-------
Confidence            78999999999998876421111    356788889999999999999999988653211 110    00111       


Q ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHc----CCC--CCH-hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc----hhc
Q 010739          239 YLAWKMMVEGKYVDAIKLVIHLRES----GLK--PEV-YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE----LDG  307 (502)
Q Consensus       239 ~~~~~~~~~g~~~~a~~~~~~m~~~----g~~--p~~-~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~  307 (502)
                       +...+...|++..+...+.+....    +..  +.. ..+..+-..+... ++++.+...+.......-...    ...
T Consensus        97 -~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          97 -QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW-ARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             -HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh-cchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence             233444469999999988876542    222  222 3444555667777 789999998888744322211    111


Q ss_pred             hHHHHHHHHhc-CcHHhHHHHHHHHHHcC---C--CCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHH
Q 010739          308 KNLGLIEKYQS-DLLADGSRLSSWAIQEG---G--SSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA---DGDL  378 (502)
Q Consensus       308 ~~~~li~~~~~-g~~~~a~~~~~~m~~~~---~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t  378 (502)
                      +. .+...+.. +....+...+.+.....   .  ++.....+..+...+...|++++|...+++........   ....
T Consensus       175 ~~-~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         175 LA-MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HH-HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HH-HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            11 23333555 89998888886654432   1  11123356666777888999999999998765442222   2344


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          379 YDIVLAICASQNEGSAVSRLLSRIEV----MNSLCK-KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       379 ~~~li~~~~~~~~~~~a~~l~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                      +..+-.++...|++++|.+.++....    .+..|+ ...+..+-..|.+.|+.++|.+.+++.++
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55666889999999999999876543    343343 34566678889999999999999998654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.9e-05  Score=68.34  Aligned_cols=213  Identities=8%  Similarity=0.031  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhh-hccHhhHHHHHHHHhhCCCCCCHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEE-ERGVGDVVDLLVDMDCVGLKPGFSMI  194 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~y  194 (502)
                      |+.+-..+.+.++. ++|+++++...+..+-+...|+..-.++.        . .+++++|+..++...+..- -+..+|
T Consensus        46 ~~~~~~~~~~~e~~-~~Al~~~~~ai~lnP~~~~a~~~r~~~l~--------~l~~~~~eal~~~~~al~~~p-~~~~a~  115 (315)
T d2h6fa1          46 YDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLK--------SLQKDLHEEMNYITAIIEEQP-KNYQVW  115 (315)
T ss_dssp             HHHHHHHHHHTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HTTCCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHhCCch-HHHHHHHHHHHHHCCCChHHHHHHHHHHH--------HhCcCHHHHHHHHHHHHHHHH-hhhhHH
Confidence            44444556778888 89999999999988447778887776555        4 3469999999999877533 367899


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCCCC-CccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCC-CHhHH
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSRGIAYA-EGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKP-EVYSY  272 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty  272 (502)
                      +.+-..+.+.|++++|...++.+.+..  |+ ...|..        ..+.+...|++++|++.|+...+.  .| +...|
T Consensus       116 ~~~~~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~--------~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~  183 (315)
T d2h6fa1         116 HHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQH--------RQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVW  183 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHH--------HHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHH
T ss_pred             HHHhHHHHhhccHHHHHHHHhhhhhhh--hcchHHHHH--------HHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHH
Confidence            999999999999999999999998765  22 222222        445555579999999999999876  33 45566


Q ss_pred             HHHHHHHHhcc-----ccHHHHHHHHHHHHHcCCCC-chhchHHHHHHHHhcCcHHhHHHHHHHHHHcCCCCchHhHHHH
Q 010739          273 LIALTAVVKEL-----NEFGKALRKLKGYVRAGSIA-ELDGKNLGLIEKYQSDLLADGSRLSSWAIQEGGSSLYGVVHER  346 (502)
Q Consensus       273 ~~li~~~~~~~-----~~~~~a~~~~~~m~~~g~~p-~~~~~~~~li~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  346 (502)
                      +.+-..+.+.+     +..++|++.+....+.  .| +...++ .+...+.....+++.+.++..........+...+..
T Consensus       184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~-~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  260 (315)
T d2h6fa1         184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWN-YLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAF  260 (315)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHH-HHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHH
T ss_pred             HHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHH-HHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence            65555555441     2367777777666443  23 333333 344445555567777777776665544445455556


Q ss_pred             HHHHHHH
Q 010739          347 LLAMYIC  353 (502)
Q Consensus       347 li~~~~~  353 (502)
                      +...|..
T Consensus       261 l~~~y~~  267 (315)
T d2h6fa1         261 LVDIYED  267 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=0.00019  Score=65.28  Aligned_cols=207  Identities=12%  Similarity=0.081  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH-----HHhC-cHHHHHHHHHHHHHcC
Q 010739          191 FSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM-----MVEG-KYVDAIKLVIHLRESG  264 (502)
Q Consensus       191 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~-----~~~g-~~~~a~~~~~~m~~~g  264 (502)
                      ...|+.+-..+.+.+..++|.+++++..+.+  |+.            .-.|+.     ...| ++++|++.++..... 
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~------------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~-  107 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AAN------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-  107 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTC------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCC------------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-
Confidence            3566777777788888888888888888765  332            122222     1123 578888877776654 


Q ss_pred             CCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCc-hhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchH
Q 010739          265 LKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAE-LDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYG  341 (502)
Q Consensus       265 ~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~  341 (502)
                       .| +..+|+..-..+.+. |+.++|++.++...+.  .|+ ...|. .+...+.+ |++++|.+.|+++.+......+ 
T Consensus       108 -~p~~~~a~~~~~~~~~~l-~~~~eAl~~~~kal~~--dp~n~~a~~-~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~-  181 (315)
T d2h6fa1         108 -QPKNYQVWHHRRVLVEWL-RDPSQELEFIADILNQ--DAKNYHAWQ-HRQWVIQEFKLWDNELQYVDQLLKEDVRNNS-  181 (315)
T ss_dssp             -CTTCHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH-
T ss_pred             -HHhhhhHHHHHhHHHHhh-ccHHHHHHHHhhhhhh--hhcchHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHCCccHH-
Confidence             23 356666666677777 6777777777777543  333 33343 45556666 7777777777777665444333 


Q ss_pred             hHHHHHHHHHHHcCC------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHH
Q 010739          342 VVHERLLAMYICAGR------GLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC-KKKT  413 (502)
Q Consensus       342 ~~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p-~~~~  413 (502)
                       .|+.+-..+.+.+.      +++|+..+.+..+.  .| +...|+-+-..+. ....+++.+.++........+ +...
T Consensus       182 -a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~  257 (315)
T d2h6fa1         182 -VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYL  257 (315)
T ss_dssp             -HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHH
T ss_pred             -HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHH
Confidence             66655555555443      45666666665543  23 3444444433333 333455555555444333222 3344


Q ss_pred             HHHHHHHHH
Q 010739          414 LSWLLRGYI  422 (502)
Q Consensus       414 ~~~li~~~~  422 (502)
                      +..+...|.
T Consensus       258 ~~~l~~~y~  266 (315)
T d2h6fa1         258 IAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=0.00029  Score=61.61  Aligned_cols=217  Identities=9%  Similarity=-0.073  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHcCCCCh----HHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCc
Q 010739          131 WCALEVFEWLKKENRVDN----ETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEK  206 (502)
Q Consensus       131 ~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~  206 (502)
                      +.++.-+++.......+.    .+|..+-..+.        +.|++++|...|++..+.. +-+..+|+.+-.+|.+.|+
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~--------~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~   86 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYD--------SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN   86 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHH
Confidence            456666666665442222    24443334444        8999999999999988753 2367899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC-ccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcccc
Q 010739          207 KERAVLFVKAVLSRGIAYAE-GDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNE  285 (502)
Q Consensus       207 ~~~A~~l~~~m~~~~~~p~~-~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~  285 (502)
                      +++|.+.|++..+.+  |+. ..+..        +...+...|++++|.+.|+...+.. +.+......+..++.+. +.
T Consensus        87 ~~~A~~~~~~al~~~--p~~~~a~~~--------lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~-~~  154 (259)
T d1xnfa_          87 FDAAYEAFDSVLELD--PTYNYAHLN--------RGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKL-DE  154 (259)
T ss_dssp             HHHHHHHHHHHHHHC--TTCTHHHHH--------HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-CH
T ss_pred             HHHhhhhhhHHHHHH--hhhhhhHHH--------HHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHh-hh
Confidence            999999999998765  332 12222        4455556799999999999987763 22333333333344444 33


Q ss_pred             HHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-----CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHH
Q 010739          286 FGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-----DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEA  360 (502)
Q Consensus       286 ~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A  360 (502)
                      .+.+..+........  ++...+  .++..+..     +..+.+...+.....  ..+....+|..+-..|...|++++|
T Consensus       155 ~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A  228 (259)
T d1xnfa_         155 KQAKEVLKQHFEKSD--KEQWGW--NIVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSA  228 (259)
T ss_dssp             HHHHHHHHHHHHHSC--CCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhhccc--hhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHH
Confidence            444444333333322  222222  23433332     122222222211111  0111223666777888889999999


Q ss_pred             HHHHHHHHHCCCCCCH
Q 010739          361 ERQLWEMKLVGKEADG  376 (502)
Q Consensus       361 ~~l~~~m~~~g~~p~~  376 (502)
                      ...|+....  ..|+.
T Consensus       229 ~~~~~~al~--~~p~~  242 (259)
T d1xnfa_         229 TALFKLAVA--NNVHN  242 (259)
T ss_dssp             HHHHHHHHT--TCCTT
T ss_pred             HHHHHHHHH--cCCCC
Confidence            999998774  34543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=0.00027  Score=61.84  Aligned_cols=187  Identities=10%  Similarity=-0.068  Sum_probs=118.6

Q ss_pred             HHHHHHhCcHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-chHHHHHHHHhc
Q 010739          241 AWKMMVEGKYVDAIKLVIHLRESGLKP-EVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-GKNLGLIEKYQS  318 (502)
Q Consensus       241 ~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~~li~~~~~  318 (502)
                      -..+...|++++|++.|++..+.  .| +..+|+.+-.++.+. |++++|++.|++..+.  .|+.. .+. .+-..|..
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~--~p~~~~a~~-~lg~~~~~  117 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLEL--DPTYNYAHL-NRGIALYY  117 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCTHHHH-HHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHH-HHHHHhhhhhhHHHHH--HhhhhhhHH-HHHHHHHH
Confidence            44555679999999999998875  34 467888899999999 8999999999998654  34322 332 46666777


Q ss_pred             -CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010739          319 -DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSR  397 (502)
Q Consensus       319 -g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~  397 (502)
                       |++++|.+.|++.........  .....+..++.+.+..+.+..+........-.+.  .++. +..+  .+.......
T Consensus       118 ~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~--~~~~~~~~~  190 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQDDPNDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWNI-VEFY--LGNISEQTL  190 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHHH-HHHH--TTSSCHHHH
T ss_pred             HhhHHHHHHHHHHHHhhccccH--HHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhhH-HHHH--HHHHHHHHH
Confidence             999999999998887754332  2333344455566666666666666655432222  2221 2222  222222111


Q ss_pred             HHHHHHHcCC-----CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 010739          398 LLSRIEVMNS-----LC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDLG  441 (502)
Q Consensus       398 l~~~m~~~~~-----~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  441 (502)
                       ++.......     .| ...+|..+-..|...|++++|.+.|++.+...
T Consensus       191 -~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         191 -MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             -HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence             111111110     11 23456668888999999999999999987643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=0.00053  Score=61.36  Aligned_cols=123  Identities=14%  Similarity=0.028  Sum_probs=58.7

Q ss_pred             HHhCcHHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCCc-hhchHHHHHH
Q 010739          245 MVEGKYVDAIKLVIHLRES----GLKPE-VYSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIAE-LDGKNLGLIE  314 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~----g~~p~-~~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~~li~  314 (502)
                      -..|++++|.+.|.+....    +-.++ ..+|+.+-.+|.+. +++++|.+.++...+    .|-... ...+. .+..
T Consensus        48 ~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-~l~~  125 (290)
T d1qqea_          48 RLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTHRGQFRRGANFKF-ELGE  125 (290)
T ss_dssp             HHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHhhHHhhhcccchhHHHHHH-HHHH
Confidence            3456777777777766542    22222 24666666777777 677777776665422    111110 11111 1222


Q ss_pred             HH-hc-CcHHhHHHHHHHHHHc----CCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010739          315 KY-QS-DLLADGSRLSSWAIQE----GGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKL  369 (502)
Q Consensus       315 ~~-~~-g~~~~a~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  369 (502)
                      .| .. |++++|.+.+.+....    +.+..-..+|..+...|.+.|++++|...|++...
T Consensus       126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            23 23 5555555555443321    11111123344455555555555555555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=0.00086  Score=59.91  Aligned_cols=212  Identities=11%  Similarity=-0.088  Sum_probs=139.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHH----cCCCCch-hchHHHHHHHHhc-CcH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVR----AGSIAEL-DGKNLGLIEKYQS-DLL  321 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~~li~~~~~-g~~  321 (502)
                      +++++|.++|.+.               -+.|... +++++|.+.|.+..+    .+-.++. .+|. .+-..|.+ |++
T Consensus        31 ~~~~~Aa~~y~~a---------------a~~y~~~-~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~-~~g~~y~~~~~~   93 (290)
T d1qqea_          31 YKFEEAADLCVQA---------------ATIYRLR-KELNLAGDSFLKAADYQKKAGNEDEAGNTYV-EAYKCFKSGGNS   93 (290)
T ss_dssp             HHHHHHHHHHHHH---------------HHHHHHT-TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHTTCH
T ss_pred             ccHHHHHHHHHHH---------------HHHHHHC-cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHhCCc
Confidence            5678888887764               3456677 789999998887733    2333332 3344 46677888 999


Q ss_pred             HhHHHHHHHHHHcC----CCCchHhHHHHHHHHHHH-cCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCC
Q 010739          322 ADGSRLSSWAIQEG----GSSLYGVVHERLLAMYIC-AGRGLEAERQLWEMKLV----GKEAD-GDLYDIVLAICASQNE  391 (502)
Q Consensus       322 ~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~~~  391 (502)
                      ++|.+.+++.....    .......++..+...|-. .|++++|...+++..+.    +..+. ..+|..+...+...|+
T Consensus        94 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~  173 (290)
T d1qqea_          94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ  173 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence            99999998765432    222223456666666644 69999999999886532    22221 3456777789999999


Q ss_pred             hhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHcccc
Q 010739          392 GSAVSRLLSRIEVMNSLCKK------KTLSWLLRGYIKGGHINDAAETLTKMLDLGLY-PE---YMDRVAVLQGLRKRIQ  461 (502)
Q Consensus       392 ~~~a~~l~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~t~~~ll~~~~~~~~  461 (502)
                      +++|.+.++...........      ..+...+..+...|+.+.|...+++..+.... ++   ......++.++-.  .
T Consensus       174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~--~  251 (290)
T d1qqea_         174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE--G  251 (290)
T ss_dssp             HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHh--c
Confidence            99999999887654322111      12333555677889999999999998765321 22   2345666677642  1


Q ss_pred             ccccHHHHHHHHhhhhh
Q 010739          462 QSGNVEAYLNLCKRLSD  478 (502)
Q Consensus       462 ~~~~~~~a~~~~~~m~~  478 (502)
                      ..+.+++|+..++.+.+
T Consensus       252 d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         252 DSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             CTTTHHHHHHHHTTSSC
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            14568899988876654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=0.00013  Score=66.99  Aligned_cols=264  Identities=9%  Similarity=-0.059  Sum_probs=136.8

Q ss_pred             HHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhh--hhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHH
Q 010739          119 VLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCS--WVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEK  196 (502)
Q Consensus       119 ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~--~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~  196 (502)
                      ++....+.... ++|+++++...+..+-+...|+..-..+-.  .........+.+++|+.+++...+.. +-+...|..
T Consensus        35 ~~~~~~~~~~~-~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~  112 (334)
T d1dcea1          35 VFQKRQAGELD-ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH  112 (334)
T ss_dssp             HHHHHHTTCCS-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHhccccc-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence            33333344445 799999999988772344555543332111  01111114667889999999887753 336667777


Q ss_pred             HHHHHHhcC--cHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHH-HhCcHHHHHHHHHHHHHcCCCCCHhHHH
Q 010739          197 VISLYWEME--KKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMM-VEGKYVDAIKLVIHLRESGLKPEVYSYL  273 (502)
Q Consensus       197 li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~ty~  273 (502)
                      +..++...+  ++++|...++...+..-. +...+..        ..+... ..|.+++|+..++....... -+...|+
T Consensus       113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~--------~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~  182 (334)
T d1dcea1         113 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDY--------RRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWH  182 (334)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHH--------HHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHH
T ss_pred             hhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhh--------HHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHH
Confidence            777777665  488999999888776411 1111111        222222 35888888888877665421 2455666


Q ss_pred             HHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHH
Q 010739          274 IALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYI  352 (502)
Q Consensus       274 ~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  352 (502)
                      .+-..+.+. |+.++|...+....+.  .|+..    .....+.. +..+++...+............  .+..+...+.
T Consensus       183 ~l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~----~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~--~~~~l~~~~~  253 (334)
T d1dcea1         183 YRSCLLPQL-HPQPDSGPQGRLPENV--LLKEL----ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF--RCELSVEKST  253 (334)
T ss_dssp             HHHHHHHHH-SCCCCSSSCCSSCHHH--HHHHH----HHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS--SCCCCHHHHH
T ss_pred             HHHHHHHHh-cCHHHHHHHHHHhHHh--HHHHH----HHHHHHHHhcchhHHHHHHHHHHHhCcchhh--HHHHHHHHHH
Confidence            666666666 5555553322221110  01100    12222333 4555555555544444333222  4444444555


Q ss_pred             HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 010739          353 CAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVM  405 (502)
Q Consensus       353 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~  405 (502)
                      ..|+.++|...+.+...  ..| +...+..+-..+...|+.++|.+.++.....
T Consensus       254 ~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         254 VLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            55555555555554432  122 1223333334555555555555555544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.71  E-value=0.00019  Score=65.81  Aligned_cols=255  Identities=7%  Similarity=-0.060  Sum_probs=158.1

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHH---------------HHhCcHHHHHHHHH
Q 010739          194 IEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKM---------------MVEGKYVDAIKLVI  258 (502)
Q Consensus       194 y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~---------------~~~g~~~~a~~~~~  258 (502)
                      ++.++...-+.+..++|.++++...+.+  |+..            -.|+.               ...|++++|+.+++
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~------------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~   97 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGAN--PDFA------------TLWNCRREVLQHLETEKSPEESAALVKAELGFLE   97 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCH------------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHC--CCcH------------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            4444444444444589999999888755  5532            12221               11367899999999


Q ss_pred             HHHHcCCCC-CHhHHHHHHHHHHhcc-ccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcC
Q 010739          259 HLRESGLKP-EVYSYLIALTAVVKEL-NEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEG  335 (502)
Q Consensus       259 ~m~~~g~~p-~~~ty~~li~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~  335 (502)
                      .....  .| +...|..+..++...+ ++.+++...+.......- ++...+...+-..+.. +..++|...+++.....
T Consensus        98 ~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~  174 (334)
T d1dcea1          98 SCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (334)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             HHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC
Confidence            98765  34 4556666767777774 468999998888855422 2233332123344666 99999999988766654


Q ss_pred             CCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010739          336 GSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLS  415 (502)
Q Consensus       336 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~  415 (502)
                      ..  +...|+.+-..+.+.|++++|...+....+.  .|+.   ......+...+..+.+...+....... .++...+.
T Consensus       175 p~--~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~  246 (334)
T d1dcea1         175 FS--NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCE  246 (334)
T ss_dssp             CC--CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCC
T ss_pred             CC--CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHH
Confidence            43  4558999999999999888776544432211  1111   122233445566666666665554443 33455555


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccccccccHHHHHHHHhhhhhc
Q 010739          416 WLLRGYIKGGHINDAAETLTKMLDLGLYPE-YMDRVAVLQGLRKRIQQSGNVEAYLNLCKRLSDT  479 (502)
Q Consensus       416 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~~~~~a~~~~~~m~~~  479 (502)
                      .+...+...|+.++|.+.+.+.....  |+ ...+..+-..+..    .|+.++|+..++...+.
T Consensus       247 ~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~----~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         247 LSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDP----LLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCT----GGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            67777777888888888888755433  43 3344444444444    78888888888877553

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.0032  Score=52.19  Aligned_cols=122  Identities=11%  Similarity=-0.044  Sum_probs=79.2

Q ss_pred             HHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchh-chHHHHHHHHhc-CcHH
Q 010739          245 MVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELD-GKNLGLIEKYQS-DLLA  322 (502)
Q Consensus       245 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~~li~~~~~-g~~~  322 (502)
                      ...|++++|++.|.++    ..|+..+|..+-.++.+. |++++|++.|++-++.  .|+.. .|. .+-..|.+ |+.+
T Consensus        16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~-g~~~~A~~~~~kAl~l--dp~~~~a~~-~~g~~~~~~g~~~   87 (192)
T d1hh8a_          16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTIL-KNMTEAEKAFTRSINR--DKHLAVAYF-QRGMLYYQTEKYD   87 (192)
T ss_dssp             HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CTTCHHHHH-HHHHHHHHTTCHH
T ss_pred             HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHc-CCchhHHHHHHHHHHH--hhhhhhhHH-HHHHHHHhhccHH
Confidence            3468888888888753    356777777788888888 7888888888877554  34333 332 35555666 8888


Q ss_pred             hHHHHHHHHHHcCCCC--------------chHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 010739          323 DGSRLSSWAIQEGGSS--------------LYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA  374 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  374 (502)
                      +|.+.|++........              ....++..+-.++.+.|++++|.+.|.+..+....|
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            8888887766432110              112344455566777788888877777766544444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.47  E-value=0.0033  Score=56.89  Aligned_cols=42  Identities=17%  Similarity=0.085  Sum_probs=19.6

Q ss_pred             HHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHc
Q 010739          311 GLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICA  354 (502)
Q Consensus       311 ~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  354 (502)
                      .++..|.. |..++...+++......  ..+...++-++..|++.
T Consensus       104 ~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_         104 ELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHh
Confidence            34555555 55555555555433221  12223455555555554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0061  Score=50.37  Aligned_cols=101  Identities=14%  Similarity=-0.017  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------------CCC
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVM------------NSL  408 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~------------~~~  408 (502)
                      .+|..+-..|...|++++|++.|++-.+.  .| +...|..+-.++.+.|++++|.+.|+.....            +..
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~  114 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  114 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhh
Confidence            34444555555555555555555554432  22 2333444444455555555555544433221            111


Q ss_pred             --C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 010739          409 --C-KKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYP  444 (502)
Q Consensus       409 --p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  444 (502)
                        + ...++..+-..|.+.|++++|.+.|++.......|
T Consensus       115 ~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         115 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence              0 12344456667888899999998888877655444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.0028  Score=47.72  Aligned_cols=97  Identities=12%  Similarity=-0.079  Sum_probs=63.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  428 (502)
                      +.+.+.|++++|+.+|++..+.. +-+...|..+-.++...|++++|.+.++.....+ ..+...|..+..+|...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence            44556677777777777766432 2244456666667777777777777776666655 336667777777778888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHH
Q 010739          429 DAAETLTKMLDLGLYPEYMDR  449 (502)
Q Consensus       429 ~A~~l~~~m~~~g~~p~~~t~  449 (502)
                      +|+..|++..+.  .|+...+
T Consensus        89 ~A~~~~~~a~~~--~p~~~~~  107 (117)
T d1elwa_          89 EAKRTYEEGLKH--EANNPQL  107 (117)
T ss_dssp             HHHHHHHHHHTT--CTTCHHH
T ss_pred             HHHHHHHHHHHh--CCCCHHH
Confidence            888888776653  4554433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0083  Score=47.71  Aligned_cols=94  Identities=9%  Similarity=-0.095  Sum_probs=68.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGG  425 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g  425 (502)
                      ..-+.|.+.|++++|+..|++..+.. +-+...|..+-.++...|++++|.+.|+...+.. .-+...|..+..+|...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence            34455677888888888888877643 2245556666678888888888888887777665 235677777888888888


Q ss_pred             CHHHHHHHHHHHHHCC
Q 010739          426 HINDAAETLTKMLDLG  441 (502)
Q Consensus       426 ~~~~A~~l~~~m~~~g  441 (502)
                      ++++|.+.+++.....
T Consensus        93 ~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          93 KFRAALRDYETVVKVK  108 (159)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            8888888888877643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00071  Score=51.63  Aligned_cols=101  Identities=14%  Similarity=0.054  Sum_probs=79.2

Q ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCC-HHHHH
Q 010739          117 QLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPG-FSMIE  195 (502)
Q Consensus       117 ~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~y~  195 (502)
                      +.+++.+...+.+ ++|.+.|+.....+..++.++..+-.++..     ....+++++|+.+|++..+.+..|+ ..+|.
T Consensus         3 ~~l~n~~~~~~~l-~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~-----s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~   76 (122)
T d1nzna_           3 EAVLNELVSVEDL-LKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-----TRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   76 (122)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-----SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCHHHH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence            4567778888889 899999999999886687877777666650     0024567789999999988665444 34778


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHcCCCCC
Q 010739          196 KVISLYWEMEKKERAVLFVKAVLSRGIAYA  225 (502)
Q Consensus       196 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~  225 (502)
                      .|-.+|.+.|++++|.+.|++..+.+  |+
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~~~--P~  104 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQTE--PQ  104 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhC--cC
Confidence            88999999999999999999998865  55

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0043  Score=49.51  Aligned_cols=88  Identities=13%  Similarity=-0.089  Sum_probs=65.8

Q ss_pred             Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 010739          316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSA  394 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~  394 (502)
                      |.+ |++++|...|++..+....  +...|..+-..|.+.|++++|...|++..+.. .-+...|..+..++...|++++
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence            445 8888888888877776433  44588888888888888888888888887643 2244677777788888888888


Q ss_pred             HHHHHHHHHHcC
Q 010739          395 VSRLLSRIEVMN  406 (502)
Q Consensus       395 a~~l~~~m~~~~  406 (502)
                      |.+.++......
T Consensus        97 A~~~~~~a~~~~  108 (159)
T d1a17a_          97 ALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC
Confidence            888887776654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0025  Score=48.00  Aligned_cols=92  Identities=8%  Similarity=-0.179  Sum_probs=80.1

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010739          120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVIS  199 (502)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~  199 (502)
                      -..+.+.|++ ++|+..|+...+..+-+...|..+-.++.        ..|++++|+..++...+.+ +.+...|..+..
T Consensus        10 g~~~~~~g~~-~eAi~~~~~al~~~p~~~~~~~~~a~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~   79 (117)
T d1elwa_          10 GNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYA--------KKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA   79 (117)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHH--------HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHcCCH-HHHHHHHHHHHhcCCcchhhhhccccccc--------ccccccccchhhhhHHHhc-cchhhHHHHHHH
Confidence            4457788999 89999999999888558888888887777        8999999999999998874 458889999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHHcC
Q 010739          200 LYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       200 ~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      +|.+.|++++|...|++..+..
T Consensus        80 ~~~~~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          80 ALEFLNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999988654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.0044  Score=51.29  Aligned_cols=87  Identities=8%  Similarity=-0.105  Sum_probs=69.2

Q ss_pred             HHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 010739          314 EKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNE  391 (502)
Q Consensus       314 ~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~  391 (502)
                      ..|.+ |++++|...|.+.+.....  +...|+.+-.+|.+.|++++|...|++..+  +.|+ ...|..+-.++...|+
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~~p~--~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~   87 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMES   87 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCC
Confidence            34666 9999999999887776533  456888889999999999999999998874  5564 5677777788999999


Q ss_pred             hhHHHHHHHHHHH
Q 010739          392 GSAVSRLLSRIEV  404 (502)
Q Consensus       392 ~~~a~~l~~~m~~  404 (502)
                      +++|...++....
T Consensus        88 ~~~A~~~~~~al~  100 (201)
T d2c2la1          88 YDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988876654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0018  Score=49.28  Aligned_cols=104  Identities=13%  Similarity=0.042  Sum_probs=59.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 010739          346 RLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEG---SAVSRLLSRIEVMNSLCK-KKTLSWLLRGY  421 (502)
Q Consensus       346 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~---~~a~~l~~~m~~~~~~p~-~~~~~~li~~~  421 (502)
                      .+++.+...+++++|++.|++....+ ..+..++..+-.++.+.++.   ++|.++++.....+..|+ ...+..+-.+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45555666666677777776666532 22445555555555554433   346666666555443333 23555567777


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010739          422 IKGGHINDAAETLTKMLDLGLYPEYMDRVAV  452 (502)
Q Consensus       422 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  452 (502)
                      .+.|++++|.+.|++.++.  .|+-.-...+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l  111 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT--EPQNNQAKEL  111 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh--CcCCHHHHHH
Confidence            7777777777777777763  4654443333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.0045  Score=51.21  Aligned_cols=94  Identities=9%  Similarity=-0.156  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCC-CHHHH
Q 010739          116 LQLVLVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKP-GFSMI  194 (502)
Q Consensus       116 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~y  194 (502)
                      +...=..+.+.|++ +.|+..|+...+..+-++..|+.+-.++.        +.|++++|+..|+...+.  .| +..+|
T Consensus         7 l~~~Gn~~~~~g~~-~~Ai~~~~kal~~~p~~~~~~~~lg~~y~--------~~~~~~~Ai~~~~~al~l--~p~~~~a~   75 (201)
T d2c2la1           7 LKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYL--------KMQQPEQALADCRRALEL--DGQSVKAH   75 (201)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHTTS--CTTCHHHH
T ss_pred             HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHh--------hhhhhhhhhHHHHHHHHh--CCCcHHHH
Confidence            45556778899999 89999999998887558888888888777        899999999999998764  44 57789


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHc
Q 010739          195 EKVISLYWEMEKKERAVLFVKAVLSR  220 (502)
Q Consensus       195 ~~li~~~~~~g~~~~A~~l~~~m~~~  220 (502)
                      ..+-.+|.+.|++++|...|++..+.
T Consensus        76 ~~lg~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          76 FFLGQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999987653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.04  E-value=0.0023  Score=47.72  Aligned_cols=88  Identities=10%  Similarity=-0.042  Sum_probs=75.2

Q ss_pred             HHHHHHcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHH
Q 010739          120 LVYFSQEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVIS  199 (502)
Q Consensus       120 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~  199 (502)
                      -..+.+.|++ ..|...|+...+..+-+...|..+-.++.        +.+++++|+..|++..+.. +-+...|..+-.
T Consensus        23 g~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~--------~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~   92 (112)
T d1hxia_          23 GLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQA--------ENEKDGLAIIALNHARMLD-PKDIAVHAALAV   92 (112)
T ss_dssp             HHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHhhh-HHHHHHHhhhcccccccchhhhhhhhhhh--------hhhhHHHhhcccccccccc-cccccchHHHHH
Confidence            4456778999 89999999999888447888888877776        8999999999999988753 346889999999


Q ss_pred             HHHhcCcHHHHHHHHHHH
Q 010739          200 LYWEMEKKERAVLFVKAV  217 (502)
Q Consensus       200 ~~~~~g~~~~A~~l~~~m  217 (502)
                      .|.+.|++++|.+.|++.
T Consensus        93 ~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          93 SHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            999999999999999875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.015  Score=46.87  Aligned_cols=77  Identities=16%  Similarity=0.015  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          377 DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       377 ~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      .+|+.+-.+|.+.|++++|.+.++...... +-+...|..+..+|...|++++|...|++..+.  .|+-......+..+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            456667778889999999999998887765 337888888999999999999999999998774  46444434334333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.95  E-value=0.0099  Score=48.38  Aligned_cols=72  Identities=17%  Similarity=0.115  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 010739          377 DLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLD-----LGLYPEYMDR  449 (502)
Q Consensus       377 ~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~  449 (502)
                      ..+..+...+...|++++|...++...... .-+...|..++.+|.+.|+.++|++.|+++.+     .|+.|...|-
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            456677889999999999999999988876 34888999999999999999999999999754     5999998763

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.93  E-value=0.0065  Score=45.13  Aligned_cols=85  Identities=11%  Similarity=-0.020  Sum_probs=46.5

Q ss_pred             HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 010739          350 MYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHIN  428 (502)
Q Consensus       350 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  428 (502)
                      .+.+.|++++|...|++....  .| +...|..+-.++.+.|++++|...++...... .-+...+..+...|...|+.+
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence            344556666666666555543  23 34444444455555566666665555554443 224555555666666666666


Q ss_pred             HHHHHHHHH
Q 010739          429 DAAETLTKM  437 (502)
Q Consensus       429 ~A~~l~~~m  437 (502)
                      +|.+.|++.
T Consensus       102 ~A~~~l~~~  110 (112)
T d1hxia_         102 AALASLRAW  110 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.76  E-value=0.098  Score=44.90  Aligned_cols=113  Identities=12%  Similarity=-0.111  Sum_probs=56.0

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAICAS----QN  390 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~~  390 (502)
                      .....+...+......+.    ...+..+...|..    ..+...+...++...+.|   +......+=..+..    ..
T Consensus       124 ~~~~~a~~~~~~~~~~~~----~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~  196 (265)
T d1ouva_         124 RDFKKAVEYFTKACDLND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK  196 (265)
T ss_dssp             CCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred             chhHHHHHHhhhhhcccc----cchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCccccc
Confidence            344455554444333222    2355555555554    344555666666555544   22222222222222    35


Q ss_pred             ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 010739          391 EGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIK----GGHINDAAETLTKMLDLG  441 (502)
Q Consensus       391 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g  441 (502)
                      +.+.|...|+...+.|   +...+..|-..|.+    ..+.++|.+.|++-.+.|
T Consensus       197 d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         197 NFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             chhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            6677777776666655   33344444444443    336667777777655554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.74  E-value=0.023  Score=44.70  Aligned_cols=111  Identities=14%  Similarity=-0.045  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVG----KEAD-----------GDLYDIVLAICASQNEGSAVSRLLSRIEVMNS  407 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-----------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~  407 (502)
                      .+...-..+.+.|++++|...|.+..+.-    ..++           ..+|+.+-.++.+.|++++|.+.++.....+ 
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-   97 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-   97 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence            34444455666777777777776655421    0111           2356667778888899999988888777665 


Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          408 LCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       408 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      +.+...|..+..+|...|++++|...|++..+.  .|+-......+..+
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  144 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC  144 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            347788888899999999999999999887764  35544443344433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.44  E-value=0.18  Score=44.96  Aligned_cols=246  Identities=9%  Similarity=-0.090  Sum_probs=116.9

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHh
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVE  247 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~  247 (502)
                      +.|.++.|..++..+..         |..++..|.+.++++.|.+++.......      ++..        +...++..
T Consensus        26 ~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~~~~------~~k~--------~~~~l~~~   82 (336)
T d1b89a_          26 DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKANSTR------TWKE--------VCFACVDG   82 (336)
T ss_dssp             ---CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHTCHH------HHHH--------HHHHHHHT
T ss_pred             HCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcCCHH------HHHH--------HHHHHHhC
Confidence            78888888888876543         6677778888888888777765432111      1111        22222222


Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhcCcHHhHHHH
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQSDLLADGSRL  327 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~g~~~~a~~~  327 (502)
                      .....|     .+...+...+......++..|-.. |..++...+++..... -..+...++ -++..|++-+.+...+.
T Consensus        83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~-~~~e~Li~~Le~~~~~-~~~~~~~~~-~L~~lyak~~~~kl~e~  154 (336)
T d1b89a_          83 KEFRLA-----QMCGLHIVVHADELEELINYYQDR-GYFEELITMLEAALGL-ERAHMGMFT-ELAILYSKFKPQKMREH  154 (336)
T ss_dssp             TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTS-TTCCHHHHH-HHHHHHHTTCHHHHHHH
T ss_pred             cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHc-CChHHHHHHHHHHHcC-CccchHHHH-HHHHHHHHhChHHHHHH
Confidence            322221     222223344555556677777777 6777777766654321 122333344 46777777333333333


Q ss_pred             HHHHHHcC-CCCchH-------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010739          328 SSWAIQEG-GSSLYG-------VVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLL  399 (502)
Q Consensus       328 ~~~m~~~~-~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~  399 (502)
                      +...  .. ...+.+       ..|.-++.-|.+.|++++|..+.   .++  .++..-....+..+.+..+.+...++.
T Consensus       155 l~~~--s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i  227 (336)
T d1b89a_         155 LELF--WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAI  227 (336)
T ss_dssp             HHHH--STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred             HHhc--cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHH
Confidence            3211  11 111000       01333444444455555444332   111  122222344556666777777666665


Q ss_pred             HHHHHcCCCCCHHHHHHH-------------HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 010739          400 SRIEVMNSLCKKKTLSWL-------------LRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGLRK  458 (502)
Q Consensus       400 ~~m~~~~~~p~~~~~~~l-------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~  458 (502)
                      ......  .|  ...+-+             +.-+-+.+++.-....++...+.|   +....+++.+.+..
T Consensus       228 ~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie  292 (336)
T d1b89a_         228 QFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFIT  292 (336)
T ss_dssp             HHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHH
T ss_pred             HHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhC
Confidence            544332  12  222333             444444444444445554444444   23456666666665

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.036  Score=41.93  Aligned_cols=96  Identities=13%  Similarity=-0.004  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-----HHHHHHH
Q 010739          344 HERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL-CK-----KKTLSWL  417 (502)
Q Consensus       344 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~-p~-----~~~~~~l  417 (502)
                      +..+-..|.+.|++++|+..|.+..+.. +-+...|..+-.+|.+.|++++|.+.++........ +.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3444555666677777777776666542 123555555666666677777776666654432211 11     1355556


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHC
Q 010739          418 LRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       418 i~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      -..+...+++++|.+.|++-...
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            66777778888888888776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.20  E-value=0.2  Score=42.82  Aligned_cols=210  Identities=11%  Similarity=-0.043  Sum_probs=125.7

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHH
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWE----MEKKERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWK  243 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~  243 (502)
                      +.+++++|+.+|++..+.|   |...+-.|-..|..    ..+...|...+..-...+...-             ....+
T Consensus        14 ~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a-------------~~~l~   77 (265)
T d1ouva_          14 KEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG-------------CHLLG   77 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH-------------HHHHH
T ss_pred             HCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccch-------------hhccc
Confidence            7899999999999998876   44555556666665    6689999999988877662210             01111


Q ss_pred             HH-H-----hCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh--cc-ccHHHHHHHHHHHHHcCCCCchhchHHHHHH
Q 010739          244 MM-V-----EGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVK--EL-NEFGKALRKLKGYVRAGSIAELDGKNLGLIE  314 (502)
Q Consensus       244 ~~-~-----~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~--~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~  314 (502)
                      .+ .     .++.+.|...++.-...|.....   ..+...+..  .. .....+...+......+.   ...+. .|-.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~---~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~-~L~~  150 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEGC---ASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---GDGCT-ILGS  150 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHH-HHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhHH---HhhcccccCCCcccchhHHHHHHhhhhhcccc---cchhh-hhhh
Confidence            11 1     36888999988887766542222   222222222  11 456777776665544432   22222 3444


Q ss_pred             HHhc-----CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010739          315 KYQS-----DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC----AGRGLEAERQLWEMKLVGKEADGDLYDIVLAI  385 (502)
Q Consensus       315 ~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~  385 (502)
                      .|..     .+...+...++...+.+.+.    .+..+-..|..    ..+.++|...|.+-.+.|-   ...+..|-..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g~~~----A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~LG~~  223 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLKDSP----GCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM  223 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred             hhccCCCcccccccchhhhhccccccccc----cccchhhhcccCcccccchhhhhhhHhhhhcccC---HHHHHHHHHH
Confidence            4443     56667777777666655332    44444444444    5689999999999888763   3344444344


Q ss_pred             HHh----cCChhHHHHHHHHHHHcCC
Q 010739          386 CAS----QNEGSAVSRLLSRIEVMNS  407 (502)
Q Consensus       386 ~~~----~~~~~~a~~l~~~m~~~~~  407 (502)
                      +..    ..+.+.|.+.|+.....|.
T Consensus       224 y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         224 QYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            433    3367778887777766663

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.18  Score=39.93  Aligned_cols=74  Identities=8%  Similarity=-0.120  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 010739          342 VVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC-KKKTLSWLLR  419 (502)
Q Consensus       342 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p-~~~~~~~li~  419 (502)
                      .+|+.+-.+|.+.|++++|+..+++..+.  .| +...|..+-.++...|++++|...|+......  | |......+-.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~  138 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAV  138 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            36777777888889999999888887764  35 56667777788888899999988888877654  3 4444444333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=95.89  E-value=0.0062  Score=53.14  Aligned_cols=118  Identities=8%  Similarity=-0.016  Sum_probs=73.2

Q ss_pred             HhcCcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhH
Q 010739          316 YQSDLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYD-IVLAICASQNEGSA  394 (502)
Q Consensus       316 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~~~~~~  394 (502)
                      +..|++++|...+++.++.....  ...+..+...|+..|++++|...|+...+.  .|+..... .+-..+...+..++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d--~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence            33489999999998887775544  448999999999999999999999998764  56543322 22222222111111


Q ss_pred             HHHHHHHHHHcCC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          395 VSRLLSRIEVMNS--LC-KKKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       395 a~~l~~~m~~~~~--~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      +   +........  .| +...+......+.+.|+.++|.+++++..+.
T Consensus        83 a---~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 F---AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             H---TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             H---HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            1   111111111  12 2222333455677889999999999887653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.026  Score=42.79  Aligned_cols=87  Identities=8%  Similarity=-0.033  Sum_probs=51.7

Q ss_pred             Hhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-----HHHHHHHHHHHHh
Q 010739          316 YQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGK-EAD-----GDLYDIVLAICAS  388 (502)
Q Consensus       316 ~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-----~~t~~~li~~~~~  388 (502)
                      |.+ |++++|.+.|.+.+.....  +...|..+-.+|.+.|++++|...+++..+..- .++     ..+|..+-..+..
T Consensus        14 ~~~~~~y~~Ai~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~   91 (128)
T d1elra_          14 AYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK   91 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc--cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence            444 6777777777666655332  344677777777777777777777777654210 011     1345555566666


Q ss_pred             cCChhHHHHHHHHHHH
Q 010739          389 QNEGSAVSRLLSRIEV  404 (502)
Q Consensus       389 ~~~~~~a~~l~~~m~~  404 (502)
                      .+++++|.+.++....
T Consensus        92 ~~~~~~A~~~~~kal~  107 (128)
T d1elra_          92 EEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            6777777777755443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.75  E-value=0.075  Score=42.85  Aligned_cols=95  Identities=16%  Similarity=0.038  Sum_probs=71.4

Q ss_pred             HHHHHcCCChHHHHHHHHHHHHcC--CC--Ch------------------HHHHHHHHHHhhhhhhhhhhhccHhhHHHH
Q 010739          121 VYFSQEGRDSWCALEVFEWLKKEN--RV--DN------------------ETMELMVSIMCSWVKKYIEEERGVGDVVDL  178 (502)
Q Consensus       121 ~~~~~~~~~~~~a~~~~~~m~~~~--~~--~~------------------~~~~~li~~~~~~~~~~~~~~~~~~~a~~~  178 (502)
                      ......|++ +.|.+.|.......  .+  +.                  ..+..+...+.        ..|++++|+..
T Consensus        19 ~~~~~~g~~-e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~--------~~g~~~~Al~~   89 (179)
T d2ff4a2          19 VHAAAAGRF-EQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI--------ACGRASAVIAE   89 (179)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH--------HTTCHHHHHHH
T ss_pred             HHHHHCCCH-HHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCCchHHHHH
Confidence            456677888 68888887776542  11  11                  12333444333        89999999999


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH-----HcCCCCC
Q 010739          179 LVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVL-----SRGIAYA  225 (502)
Q Consensus       179 ~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~-----~~~~~p~  225 (502)
                      ++...+. -+-+...|..++.+|.+.|+.++|.+.|++..     +.|+.|.
T Consensus        90 ~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          90 LEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999885 33488899999999999999999999999974     4688887

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.51  E-value=0.068  Score=42.53  Aligned_cols=95  Identities=8%  Similarity=-0.058  Sum_probs=64.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 010739          345 ERLLAMYICAGRGLEAERQLWEMKLV--------------GKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLC  409 (502)
Q Consensus       345 ~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p  409 (502)
                      ......+.+.|++++|+..|.+..+.              .+.| +...|..+-.++.+.|++++|...++...... ..
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~  109 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PS  109 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hh
Confidence            33444455666666666666554321              1122 23345555577788888888888888777655 33


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 010739          410 KKKTLSWLLRGYIKGGHINDAAETLTKMLDL  440 (502)
Q Consensus       410 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  440 (502)
                      +...|..+-.+|.+.|++++|.+.|++.++.
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            6777888888888889999998888888764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=95.22  E-value=0.43  Score=37.50  Aligned_cols=111  Identities=10%  Similarity=-0.006  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLV---GKEAD-----------GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSL  408 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~-----------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~  408 (502)
                      .+.-.-..+.+.|++++|...|.+....   ...++           ...|+.+-.++.+.|++++|...++...... .
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p   95 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S   95 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence            3344445555666666666666554321   11111           2234555567888999999999998877765 4


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010739          409 CKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGLYPEYMDRVAVLQGL  456 (502)
Q Consensus       409 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~  456 (502)
                      .+...|..+..+|...|++++|.+.|++.+..  .|+.......+..+
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMC  141 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            47888888999999999999999999998864  46655555455554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.16  E-value=0.32  Score=37.72  Aligned_cols=89  Identities=9%  Similarity=-0.116  Sum_probs=51.1

Q ss_pred             HHHcCChHHHHHHHHHHHHC-CCCCC----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCC----
Q 010739          351 YICAGRGLEAERQLWEMKLV-GKEAD----------GDLYDIVLAICASQNEGSAVSRLLSRIEVM-----NSLCK----  410 (502)
Q Consensus       351 ~~~~g~~~~A~~l~~~m~~~-g~~p~----------~~t~~~li~~~~~~~~~~~a~~l~~~m~~~-----~~~p~----  410 (502)
                      +.+.|++++|+..|++-.+. .-.|+          ...|+.+-.++...|++++|.+-++.....     ...++    
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~   98 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL   98 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence            33456666666666655432 11111          234555556666666666666655443321     11111    


Q ss_pred             -HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 010739          411 -KKTLSWLLRGYIKGGHINDAAETLTKMLD  439 (502)
Q Consensus       411 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~  439 (502)
                       ...++.+-.+|...|++++|.+.|++..+
T Consensus        99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          99 WISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             22455577889999999999999998654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.025  Score=54.26  Aligned_cols=113  Identities=8%  Similarity=-0.168  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHHcCCCCchhchHHHHHHHHhc-CcHHhHHHHHHHHHHcCCCCchHhHHHHHH
Q 010739          270 YSYLIALTAVVKELNEFGKALRKLKGYVRAGSIAELDGKNLGLIEKYQS-DLLADGSRLSSWAIQEGGSSLYGVVHERLL  348 (502)
Q Consensus       270 ~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~~li~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  348 (502)
                      ..+..+-..+.+. ++.++|...+..-....  |. ..+. .+-..+.. |++++|...|.+.........  ..|+.+-
T Consensus       121 ~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~--~~-~~~~-~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~--~~~~~Lg  193 (497)
T d1ya0a1         121 VKSSQLGIISNKQ-THTSAIVKPQSSSCSYI--CQ-HCLV-HLGDIARYRNQTSQAESYYRHAAQLVPSNG--QPYNQLA  193 (497)
T ss_dssp             -----------------------CCHHHHHH--HH-HHHH-HHHHHHHHTTCHHHHHHHHHHHHHHCTTBS--HHHHHHH
T ss_pred             HHHHHhHHHHHhC-CCHHHHHHHHHHHhCCC--HH-HHHH-HHHHHHHHcccHHHHHHHHHHHHHHCCCch--HHHHHHH
Confidence            4445555555555 56666665544432111  11 1221 34455666 888888888888777654443  4888888


Q ss_pred             HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010739          349 AMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQN  390 (502)
Q Consensus       349 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~  390 (502)
                      ..|...|+..+|...|.+-.... .|-..++..|...+.+..
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence            88888888888888888876543 456667777776665543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.77  E-value=0.48  Score=36.54  Aligned_cols=61  Identities=7%  Similarity=-0.154  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEV  404 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~  404 (502)
                      +|+.+-.+|.+.|++++|++.+++..+.. +-+..+|..+-.++...|++++|...|+....
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            44444444555555555555555444321 11334444444455555555555555544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.66  E-value=0.25  Score=38.99  Aligned_cols=76  Identities=11%  Similarity=-0.123  Sum_probs=52.5

Q ss_pred             hHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010739          340 YGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEA-DGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLL  418 (502)
Q Consensus       340 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li  418 (502)
                      ....|+.+-.+|.+.|++++|+..+++..+.  .| +...|..+-.++...|+++.|.+.|+....... .+......+-
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~~l~  152 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence            3446777777788888888888888887753  34 455677777888888888888888877766542 2444444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.66  E-value=0.21  Score=42.94  Aligned_cols=53  Identities=17%  Similarity=0.048  Sum_probs=47.4

Q ss_pred             hhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          168 EERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      +.|++++|+..+++..+. -+-|...+..+...|+..|++++|.+.|+...+..
T Consensus         8 ~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~   60 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF   60 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            689999999999999886 34588999999999999999999999999998765

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.19  Score=47.81  Aligned_cols=77  Identities=10%  Similarity=0.038  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEAD-GDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGY  421 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~  421 (502)
                      ++..+-..+...|++++|...|++..+.  .|+ ...|+.+-..+...|+..+|...+....... .|-...+..|...|
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            4444555555566666666666555432  333 2455555555555666666555554444333 34445555555444


Q ss_pred             H
Q 010739          422 I  422 (502)
Q Consensus       422 ~  422 (502)
                      .
T Consensus       231 ~  231 (497)
T d1ya0a1         231 S  231 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.41  E-value=0.37  Score=37.93  Aligned_cols=63  Identities=11%  Similarity=-0.120  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 010739          343 VHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMN  406 (502)
Q Consensus       343 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~  406 (502)
                      .|+.+-.+|.+.|++++|+..+++..+.. +.+...|..+-.++...|++++|.+.++......
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45556666777778888877777766532 2355566666677777788888777777766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.80  E-value=0.3  Score=37.42  Aligned_cols=33  Identities=6%  Similarity=-0.143  Sum_probs=17.4

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYIC  353 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  353 (502)
                      +.+++|.+.|+..........+  .|..+-.+|..
T Consensus        11 ~~fe~A~~~~e~al~~~P~~~~--~~~~~g~~l~~   43 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPLDAD--NLTRWGGVLLE   43 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCcchH--HHHHHHHHHHH
Confidence            5566666666665555433323  55555444443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.75  E-value=0.49  Score=36.58  Aligned_cols=85  Identities=8%  Similarity=-0.077  Sum_probs=55.2

Q ss_pred             CcHHhHHHHHHHHHHcC--CCC--------chHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCH-----HH
Q 010739          319 DLLADGSRLSSWAIQEG--GSS--------LYGVVHERLLAMYICAGRGLEAERQLWEMKLV-----GKEADG-----DL  378 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~--~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~-----~t  378 (502)
                      |++++|.+.|++.+...  .+.        ....+|+.+-.+|.+.|++++|...+++....     ...++.     ..
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a  102 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  102 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence            56666666665554422  111        12357888888899999999998888886642     223322     23


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 010739          379 YDIVLAICASQNEGSAVSRLLSRIE  403 (502)
Q Consensus       379 ~~~li~~~~~~~~~~~a~~l~~~m~  403 (502)
                      |+.+-.++...|++++|.+.|+...
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4555578888999999988886543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.05  E-value=0.32  Score=37.32  Aligned_cols=123  Identities=9%  Similarity=-0.039  Sum_probs=77.3

Q ss_pred             HcCCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhhh--hhhhhhhhccHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010739          125 QEGRDSWCALEVFEWLKKENRVDNETMELMVSIMCSW--VKKYIEEERGVGDVVDLLVDMDCVGLKPGFSMIEKVISLYW  202 (502)
Q Consensus       125 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~--~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~  202 (502)
                      +.+.+ ++|.+.|+...+..+-+...+..+-.++...  .....+..+.+++|+..|++..+.. +-+..+|+.+-.+|.
T Consensus         9 r~~~f-e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           9 RILLF-EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHccH-HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence            34457 8999999999988844777776665544311  1001113466788999999888753 236678888888887


Q ss_pred             hcCc-----------HHHHHHHHHHHHHcCCCCCCccccccCCCCchHHHHHHHHhCcHHHHHHHHHHHHHcCC
Q 010739          203 EMEK-----------KERAVLFVKAVLSRGIAYAEGDGEGQQGGPTGYLAWKMMVEGKYVDAIKLVIHLRESGL  265 (502)
Q Consensus       203 ~~g~-----------~~~A~~l~~~m~~~~~~p~~~ty~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~m~~~g~  265 (502)
                      ..|+           +++|.+.|+...+..  |+..+|..              .-+...+|.+++.+..+.|+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--P~~~~~~~--------------~L~~~~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLK--------------SLEMTAKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHH--------------HHHHHHTHHHHHHHHHHSSS
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccC--CCHHHHHH--------------HHHHHHHHHHHHHHHHHHhc
Confidence            6553           577777777776544  55333321              12334566666666665543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.01  E-value=1.2  Score=32.72  Aligned_cols=119  Identities=12%  Similarity=0.043  Sum_probs=60.6

Q ss_pred             CcHHhHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHC-C----------------CCCCHHHHHH
Q 010739          319 DLLADGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLV-G----------------KEADGDLYDI  381 (502)
Q Consensus       319 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g----------------~~p~~~t~~~  381 (502)
                      |.+++..++..+........    -||-+|-.....-+-+-.+..++..-.. .                ..-+..-++.
T Consensus        16 G~ve~Gveii~k~~~ss~~~----E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdl   91 (161)
T d1wy6a1          16 GYIDEGVKIVLEITKSSTKS----EYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK   91 (161)
T ss_dssp             TCHHHHHHHHHHHHHHSCHH----HHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred             hhHHhHHHHHHHHcccCCcc----ccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHH
Confidence            77777777776665544221    3444444444444444444444443211 0                0113334445


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 010739          382 VLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLRGYIKGGHINDAAETLTKMLDLGL  442 (502)
Q Consensus       382 li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  442 (502)
                      .++....+|.-++..++...+.+ +-.|+....-.+-.+|.+-|...++-+++.+.-+.|+
T Consensus        92 ALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          92 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            55555666666665555555444 2245555555566666666666666666666555554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.03  E-value=1.6  Score=31.97  Aligned_cols=140  Identities=11%  Similarity=0.084  Sum_probs=98.8

Q ss_pred             HHHhCcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHH-HHcCCCCchhchHHHHHHHHhcCcHH
Q 010739          244 MMVEGKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGY-VRAGSIAELDGKNLGLIEKYQSDLLA  322 (502)
Q Consensus       244 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~~li~~~~~g~~~  322 (502)
                      +...|.+++..++..+....   -+..-||.+|.-.... -+-+...+.++.. .-..+.|-.-.-  .++..|..    
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt-~dC~~v~~~Ld~IG~~FDls~C~Nlk--~vv~C~~~----   81 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLES-IDCRYMFQVLDKIGSYFDLDKCQNLK--SVVECGVI----   81 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHH-CCHHHHHHHHHHHGGGSCGGGCSCTH--HHHHHHHH----
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccc-cchHHHHHHHHHHhhhcCchhhhcHH--HHHHHHHH----
Confidence            44579999999999988765   4667788888888887 5777777766665 222333322211  24444443    


Q ss_pred             hHHHHHHHHHHcCCCCchHhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010739          323 DGSRLSSWAIQEGGSSLYGVVHERLLAMYICAGRGLEAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRI  402 (502)
Q Consensus       323 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m  402 (502)
                                 .+.   +....+..++.+.+.|+-++-.++++++.+ .-+|++...-.+-.+|.+.|+..++.+++.+.
T Consensus        82 -----------~n~---~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~A  146 (161)
T d1wy6a1          82 -----------NNT---LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA  146 (161)
T ss_dssp             -----------TTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----------hcc---hHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence                       111   113566778888999999999999999776 45777777788889999999999999999888


Q ss_pred             HHcCCC
Q 010739          403 EVMNSL  408 (502)
Q Consensus       403 ~~~~~~  408 (502)
                      -+.|..
T Consensus       147 Ce~G~K  152 (161)
T d1wy6a1         147 CKKGEK  152 (161)
T ss_dssp             HHTTCH
T ss_pred             HHHhHH
Confidence            777753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=1.3  Score=30.62  Aligned_cols=54  Identities=11%  Similarity=0.027  Sum_probs=45.1

Q ss_pred             hhccHhhHHHHHHHHhhCC-----CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          168 EERGVGDVVDLLVDMDCVG-----LKPG-FSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       168 ~~~~~~~a~~~~~~m~~~g-----~~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      +.|++++|..+|++..+..     ..++ ..+|+.|-.+|.+.|++++|.+.+++..+.+
T Consensus        17 ~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            8999999999999876531     1222 5789999999999999999999999998765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.17  E-value=1.1  Score=31.01  Aligned_cols=76  Identities=9%  Similarity=0.032  Sum_probs=54.8

Q ss_pred             cChhhHHHHHHHHHHcCCChHHHHHHHHHHHHcC------CCC-hHHHHHHHHHHhhhhhhhhhhhccHhhHHHHHHHHh
Q 010739          111 LSARELQLVLVYFSQEGRDSWCALEVFEWLKKEN------RVD-NETMELMVSIMCSWVKKYIEEERGVGDVVDLLVDMD  183 (502)
Q Consensus       111 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~~------~~~-~~~~~~li~~~~~~~~~~~~~~~~~~~a~~~~~~m~  183 (502)
                      ++++++-.+=..+.+.|++ ..|.+.|++..+..      .++ ..+++.+-.++.        +.|++++|+..+++..
T Consensus         3 Lsaddc~~lG~~~~~~g~y-~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~--------~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_           3 LTAEDSFELGKVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY--------QQGDLDKALLLTKKLL   73 (95)
T ss_dssp             CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH--------hcCChHHHHHHHHHHH
Confidence            3456656677778889999 89999998876542      122 346777777666        8999999999999988


Q ss_pred             hCCCCCC-HHHHHHH
Q 010739          184 CVGLKPG-FSMIEKV  197 (502)
Q Consensus       184 ~~g~~p~-~~~y~~l  197 (502)
                      +.  .|+ ..+++.+
T Consensus        74 ~l--~P~~~~a~~Nl   86 (95)
T d1tjca_          74 EL--DPEHQRANGNL   86 (95)
T ss_dssp             HH--CTTCHHHHHHH
T ss_pred             Hh--CcCCHHHHHHH
Confidence            85  344 4444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=85.95  E-value=2.6  Score=31.11  Aligned_cols=47  Identities=13%  Similarity=0.007  Sum_probs=23.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhccccHHHHHHHHHHHHHcC
Q 010739          248 GKYVDAIKLVIHLRESGLKPEVYSYLIALTAVVKELNEFGKALRKLKGYVRAG  300 (502)
Q Consensus       248 g~~~~a~~~~~~m~~~g~~p~~~ty~~li~~~~~~~~~~~~a~~~~~~m~~~g  300 (502)
                      .++++|+++|++--+.|...   .+..+..  ... .+.++|++++..-.+.|
T Consensus         7 kd~~~A~~~~~kaa~~g~~~---a~~~l~~--~~~-~~~~~a~~~~~~aa~~g   53 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMF---GCLSLVS--NSQ-INKQKLFQYLSKACELN   53 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT---HHHHHHT--CTT-SCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHCCChh---hhhhhcc--ccc-cCHHHHHHHHhhhhccc
Confidence            35666777776665555321   1111211  111 45666666666655554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=83.26  E-value=6.7  Score=28.63  Aligned_cols=17  Identities=29%  Similarity=0.364  Sum_probs=9.1

Q ss_pred             CCHHHHHHHHHHHHHCC
Q 010739          425 GHINDAAETLTKMLDLG  441 (502)
Q Consensus       425 g~~~~A~~l~~~m~~~g  441 (502)
                      .+.++|.++|++-.+.|
T Consensus       109 ~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         109 KNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCC
Confidence            35555555555555444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.18  E-value=3  Score=28.82  Aligned_cols=60  Identities=13%  Similarity=0.194  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010739          359 EAERQLWEMKLVGKEADGDLYDIVLAICASQNEGSAVSRLLSRIEVMNSLCKKKTLSWLLR  419 (502)
Q Consensus       359 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~~~~~~a~~l~~~m~~~~~~p~~~~~~~li~  419 (502)
                      ++.+-++.+....+.|+.....+.+.+|-+..++..|.++++..+... .++...|.++++
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq   83 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   83 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence            444445555555566666666666666666666666666666665332 233445555443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.23  E-value=2.4  Score=29.29  Aligned_cols=51  Identities=12%  Similarity=0.131  Sum_probs=44.1

Q ss_pred             cHhhHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHcC
Q 010739          171 GVGDVVDLLVDMDCVGLKPGFSMIEKVISLYWEMEKKERAVLFVKAVLSRG  221 (502)
Q Consensus       171 ~~~~a~~~~~~m~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~~  221 (502)
                      +.=++.+-+..+-...+.|+.....+.+++|-|.+|+..|.++|+..+.+-
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~   71 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   71 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            455666777777788899999999999999999999999999999988553