Citrus Sinensis ID: 010741

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500--

MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPRIHQKPQKRKQTYQNEC

cccccccEEEEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHcccEEEEEccEEEEEEEEccccccccccccccccEEEcccccEEEEEcccHHHHHHHccccccEEEEEccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEEEEcccEEEcccHHHHHHHHccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEcccccEEEcHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEEEEEEcccEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHcccccccccccccccccccc

cEEEEccEEEEEccccccccccHHccccccccccccccEEEEccccccccccccccccEEEcccccccEccccEEEEEccccccccccccccccccHHHHHcccccccccccccHHHHHcEEEEEcccEEEEEEccccccccccEEcccccEEEcccccEEEEEcccHHHHcccccccccEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHEEEccccccccHHHHccccHHHHccccHHHHHHHHHHHHccccHHHcccccccEEEEEEEccHHHccHHHHHHHHHccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEccccEEEEEHHHHHHccccHHHHcHHHHHHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHccccccccccccccccccc

mmmiestlavrfpagsnfcssaalshsrsichaedvtgvhvtsrrpfpsgcsnvpwnrfrrvngnpcvtrsnvtkkriqasasdpvkknertsyhpfediadstlkngEEARLTAAETSRTIIEVnstatlmftdftnggaheniiwpdlpyvtdehgniyIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAglseidfgideiddedsdvedededededeededydenwvnvlededdedemlgDWAKLEtmrsshpmyFAKKLSevisddpidwmeqppagitiqgllrpalieehsdiqrhrssnqyhdvdnsknvvvgnnqedlhvinghrnesepsrngseeskkddkpmngtsfyKLEMTKIQPILAHAHQAAVDIEdyrkaqpdvIAHSAANIISRLKAGGEKTTQALKSLCWrtkgiqveeeAVIGVDSIGFDLRVCAGTQIQTLRFAfntratseysAERQLNdllfprihqkpqkrkqtyqnec

MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTgvhvtsrrpfpsgcsnvpwnrfrrvngnpcvtrsnvtkkriqasasdpvkknertsyhpfediadstlkngEEARLTAaetsrtiievnSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEdededededeededydenwvnvlededdedEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHrssnqyhdvdnsknvvVGNNQEDLhvinghrnesepsrngseeskkddkpmNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNdllfprihqkpqkrkqtyqnec

MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSeidfgideiddedsdvedededededeededydeNWVNVLededdedeMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPRIHQKPQKRKQTYQNEC

********AVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVT**************************************************RTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGI**********************************************W**********PMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALI****************************************************************FYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSA**QLNDLLF******************

*******LAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSN********************************************ETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEME********F****IDDE*SDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQ****************************************************MNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDL********************

MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKK**************RTSYHPFEDIADSTLKNGEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDD*********************DENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHVINGHR******************PMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPRIHQ*************

MMMIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNRFRRVNGNPCVTRSNVTKKRIQASASDPVK*NERTSYHPFEDIADST*****EARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGID*********************DEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSN**********************************************MNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFPR****************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		502	2.2.26 [Sep-21-2011]
Q0WMN5		499	Uncharacterized protein A	no	no	0.940	0.945	0.470	1e-120

>sp\|Q0WMN5\|Y3913_ARATH Uncharacterized protein At3g49140 OS=Arabidopsis thaliana GN=At3g49140 PE=1 SV=2	Back alignment and function desciption

 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 243/517 (47%), Positives = 340/517 (65%), Gaps = 45/517 (8%)

Query: 3   MIESTLAVRFPAGSNFCSSAALSHSRSICHAEDVTGV-HVTSRRPF-PSGCSNVPWNRFR 60
           MIES +AVR   G  FCSS AL   R+   +E+     H  SRR F P    ++  + F 
Sbjct: 1   MIESVMAVRLSTG--FCSSTALLQYRTAPSSEEGGNCFHYASRRVFQPQRIHHIDGSGFL 58

Query: 61  RVNGNPCVTRSNVTKKRIQA------SASDPVKKNERTSYHPFEDIADSTLKNGEEARLT 114
           + N +  +TR ++ K R QA      SASDP K+  ++ YHP E+I  S  +N  ++RL+
Sbjct: 59  KYNSD-YITRKHLRKNRTQATAEYVDSASDPEKQTGKSRYHPSEEIRASLPQNDGDSRLS 117

Query: 115 AAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSL 174
            AET+RTIIEVN+  TLM T     G HENI+WPD+PY+TD++GN+Y QVK +ED++QS+
Sbjct: 118 PAETTRTIIEVNNKGTLMLTGSIGDGVHENILWPDIPYITDQNGNLYFQVKEDEDVMQSV 177

Query: 175 ISENNFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDY 234
            SENN+VQVI+GFDT EMIKEMEL GLS+ DF        +++ ++  +D+ ED  +++ 
Sbjct: 178 TSENNYVQVIVGFDTMEMIKEMELMGLSDSDF--------ETEDDESGDDDSEDTGEDED 229

Query: 235 DENWVNVL----------------EDEDDEDEMLGDWAKLETMRSSHPMYFAKKLSEVIS 278
           +E WV +L                +D+ D DE LGDWA LETMRS HPM+FAK+++EV S
Sbjct: 230 EEEWVAILEDEDEDDDDDDDDDEDDDDSDSDESLGDWANLETMRSCHPMFFAKRMTEVAS 289

Query: 279 DDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQEDLHV 338
           +DP+DWM+QP AG+ IQGLL   L+E++SDIQ+  + +         N     N++  ++
Sbjct: 290 NDPVDWMDQPSAGLAIQGLLSHILVEDYSDIQKKLADS---------NSTTNGNKDAENL 340

Query: 339 INGHRNESEPSRNGSE-ESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQ 397
           ++   + S+   + SE +S +D+K  N  +FYKLEM +IQ I A   Q  V++ED RKAQ
Sbjct: 341 VDKLEDNSKAGGDESEIDSSQDEKARNVVAFYKLEMIRIQLITAQGDQTEVEVEDVRKAQ 400

Query: 398 PDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQ 457
           PD IAH++A IISRL+  G+K T+ALKSLCWR   IQ EE  +IG+DS+GFDLR+CAG +
Sbjct: 401 PDAIAHASAEIISRLEESGDKITEALKSLCWRHNSIQAEEVKLIGIDSLGFDLRLCAGAK 460

Query: 458 IQTLRFAFNTRATSEYSAERQLNDLLFPRIHQKPQKR 494
           I++LRFAF+TRATSE +AE Q+  LLFP+ +Q  Q +
Sbjct: 461 IESLRFAFSTRATSEENAEGQIRKLLFPKTNQSTQPK 497


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,921,344
Number of Sequences: 539616
Number of extensions: 8736332
Number of successful extensions: 123039
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 736
Number of HSP's that attempted gapping in prelim test: 69727
Number of HSP's gapped (non-prelim): 24747
length of query: 502
length of database: 191,569,459
effective HSP length: 122
effective length of query: 380
effective length of database: 125,736,307
effective search space: 47779796660
effective search space used: 47779796660
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		502
359490595		511	PREDICTED: uncharacterized protein At3g4	0.960	0.943	0.608	1e-155
302143770		506	unnamed protein product [Vitis vinifera]	0.950	0.942	0.604	1e-152
356529119		474	PREDICTED: uncharacterized protein At3g4	0.866	0.917	0.620	1e-148
357498255		524	hypothetical protein MTR_6g052360 [Medic	0.994	0.952	0.565	1e-148
356561498		466	PREDICTED: uncharacterized protein At3g4	0.866	0.933	0.606	1e-145
449445979		513	PREDICTED: uncharacterized protein LOC10	0.960	0.939	0.549	1e-143
255545156		461	conserved hypothetical protein [Ricinus	0.840	0.915	0.595	1e-128
334187889		494	pentatricopeptide repeat-containing prot	0.914	0.929	0.491	1e-122
145358369		481	pentatricopeptide repeat-containing prot	0.914	0.954	0.494	1e-122
9758230		464	unnamed protein product [Arabidopsis tha	0.820	0.887	0.519	1e-120

>gi\|359490595\|ref\|XP_002274287.2\| PREDICTED: uncharacterized protein At3g49140 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 305/501 (60%), Positives = 370/501 (73%), Gaps = 19/501 (3%)

Query: 3   MIESTLAVRFPAGSN----FCSSAALSHSRSICHAEDVTGVHVTSRRPFPSGCSNVPWNR 58
           MIEST+A RF AG+       S+AA+S+ R+   +++  GVHV SRR   SG  + P  R
Sbjct: 1   MIESTMAFRFRAGAGARAGLFSTAAVSNCRATWSSDEAPGVHVASRRLSHSGSFDAPRTR 60

Query: 59  FRRVNGNPCVTRSNVTKKRIQASASDPVKKNERTSYHPFEDIADSTLKNGEEARLTAAET 118
           F  V       R N  K R + SA     +  +  YHPFE+I +S+     EARLTAAET
Sbjct: 61  FIGVTSGSFTKRRNPVKHRFRVSAEHLGSREPQ--YHPFEEIVESSFPESGEARLTAAET 118

Query: 119 SRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISEN 178
           +RT+IEVN+ ATLMF++  N   HENI WP+LPYVTDEHGNIY QV N+EDI+QSL SEN
Sbjct: 119 TRTVIEVNNKATLMFSNLINNEVHENIFWPELPYVTDEHGNIYFQVNNDEDIMQSLTSEN 178

Query: 179 NFVQVIIGFDTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDEN- 237
           NFVQVIIG DT+EM+ EMEL G +EIDFGI+EI+DEDSD++ ED++ D+D++D+D D+  
Sbjct: 179 NFVQVIIGLDTSEMLNEMELTGPAEIDFGIEEIEDEDSDLDYEDDENDDDDDDDDEDDEQ 238

Query: 238 -WVNVLEDEDDEDEM---LGDWAKLETMRSSHPMYFAKKLSEVISDDPIDWMEQPPAGIT 293
            WV +LEDE+D+++    +GDWAKLETMRSSHPM+FAK ++EV S DP+DWM QPPAGI 
Sbjct: 239 DWVAILEDEEDQEDSDEAVGDWAKLETMRSSHPMFFAKTMAEVASGDPVDWMNQPPAGIA 298

Query: 294 IQGLLRPALIEEHSDIQRHRSSNQYHDVDNSKNVVVGNNQ---EDLHVINGHRNESEPSR 350
           IQGLLRPA IEE S IQ+H SS+Q  + +   N V  N++   EDL  INGH  ES  SR
Sbjct: 299 IQGLLRPAFIEEQSVIQKHISSHQSSNAN--VNQVEKNSEDKAEDLEKINGHGQESGSSR 356

Query: 351 NGS---EESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAAN 407
           + S   E+ +KD   MNG SFYKLEM KI  I AH  QA VD+ED+R AQPD IAHSA+ 
Sbjct: 357 DNSIQAEDIEKDHNMMNGFSFYKLEMIKILLISAHGLQAVVDLEDFRNAQPDAIAHSASK 416

Query: 408 IISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNT 467
           IISRLKAGGEKTTQALKSLCWR KGIQVEE  +I VD++GFDLRVC+G Q+QTLRF FNT
Sbjct: 417 IISRLKAGGEKTTQALKSLCWRCKGIQVEEATLIDVDTLGFDLRVCSGRQVQTLRFTFNT 476

Query: 468 RATSEYSAERQLNDLLFPRIH 488
           RATSEYSAERQLNDLLFPRIH
Sbjct: 477 RATSEYSAERQLNDLLFPRIH 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|302143770\|emb\|CBI22631.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356529119\|ref\|XP_003533144.1\| PREDICTED: uncharacterized protein At3g49140-like [Glycine max]	Back alignment and taxonomy information

>gi\|357498255\|ref\|XP_003619416.1\| hypothetical protein MTR_6g052360 [Medicago truncatula] gi\|355494431\|gb\|AES75634.1\| hypothetical protein MTR_6g052360 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356561498\|ref\|XP_003549018.1\| PREDICTED: uncharacterized protein At3g49140-like [Glycine max]	Back alignment and taxonomy information

>gi\|449445979\|ref\|XP_004140749.1\| PREDICTED: uncharacterized protein LOC101209928 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255545156\|ref\|XP_002513639.1\| conserved hypothetical protein [Ricinus communis] gi\|223547547\|gb\|EEF49042.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|334187889\|ref\|NP_001190376.1\| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana] gi\|332005869\|gb\|AED93252.1\| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|145358369\|ref\|NP_197794.2\| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana] gi\|332005868\|gb\|AED93251.1\| pentatricopeptide repeat-containing protein-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|9758230\|dbj\|BAB08729.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		502
TAIR\|locus:2081182		459	AT3G59300 "AT3G59300" [Arabido	0.292	0.320	0.389	1.4e-50

TAIR\|locus:2081182 AT3G59300 "AT3G59300" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 294 (108.6 bits), Expect = 1.4e-50, Sum P(3) = 1.4e-50
 Identities = 58/149 (38%), Positives = 98/149 (65%)

Query:   345 ESEPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHS 404
             E +   N    S++D+  M+ +S Y+LE+  I+ +  +  ++++ ++D++ A+PD++ HS
Sbjct:   302 EVQGDDNPITSSRRDENDMS-SSLYRLEIVGIELLSLYGAESSISLQDFQDAEPDILVHS 360

Query:   405 AANIISRLKAGGEKTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFA 464
              + II R    G  ++ ALK+LC + KG+  EE  +I VDS+G D+RV AG Q+QT RF 
Sbjct:   361 TSAIIERFNNRGINSSIALKALC-KKKGLHAEEANLISVDSLGMDVRVFAGAQVQTHRFP 419

Query:   465 FNTRATSEYSAERQLNDLLFPRIHQKPQK 493
             F TRAT+E +AE++++ LLFPR  ++  K
Sbjct:   420 FKTRATTEMAAEKKIHQLLFPRSRRRKLK 448

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT5G24060	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G49140.1); Has 287 Blast hits to 264 proteins in 72 species- Archae - 0; Bacteria - 18; Metazoa - 77; Fungi - 32; Plants - 41; Viruses - 10; Other Eukaryotes - 109 (source- NCBI BLink). (481 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		502
pfam03066		146	pfam03066, Nucleoplasmin, Nucleoplasmin	3e-05
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	9e-05
pfam05285		317	pfam05285, SDA1, SDA1	1e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	1e-04
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	2e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	5e-04
pfam05285		317	pfam05285, SDA1, SDA1	8e-04
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.001
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	0.001
pfam12253		76	pfam12253, CAF1A, Chromatin assembly factor 1 subu	0.001
pfam09073		424	pfam09073, BUD22, BUD22	0.001
pfam05327		554	pfam05327, RRN3, RNA polymerase I specific transcr	0.001
PTZ00415		2849	PTZ00415, PTZ00415, transmission-blocking target a	0.001
PRK05901		509	PRK05901, PRK05901, RNA polymerase sigma factor; P	0.002
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.002
pfam11705		221	pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym	0.002
PRK02363		129	PRK02363, PRK02363, DNA-directed RNA polymerase su	0.002
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	0.002
pfam04147		809	pfam04147, Nop14, Nop14-like family	0.003
pfam05285		317	pfam05285, SDA1, SDA1	0.004
pfam09538		104	pfam09538, FYDLN_acid, Protein of unknown function	0.004
pfam10446		449	pfam10446, DUF2457, Protein of unknown function (D	0.004

>gnl\|CDD\|145949 pfam03066, Nucleoplasmin, Nucleoplasmin	Back alignment and domain information

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 14/40 (35%), Positives = 28/40 (70%)

Query: 198 LAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDEN 237
           ++G   +    DE DD++ D E+ED++ED+DE++ + +E+
Sbjct: 101 ISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140

Nucleoplasmins are also known as chromatin decondensation proteins. They bind to core histones and transfer DNA to them in a reaction that requires ATP. This is thought to play a role in the assembly of regular nucleosomal arrays. Length = 146

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A	Back alignment and domain information

>gnl\|CDD\|220102 pfam09073, BUD22, BUD22	Back alignment and domain information

>gnl\|CDD\|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3	Back alignment and domain information

>gnl\|CDD\|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230; Provisional	Back alignment and domain information

>gnl\|CDD\|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31	Back alignment and domain information

>gnl\|CDD\|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

>gnl\|CDD\|217927 pfam04147, Nop14, Nop14-like family	Back alignment and domain information

>gnl\|CDD\|218538 pfam05285, SDA1, SDA1	Back alignment and domain information

>gnl\|CDD\|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid)	Back alignment and domain information

>gnl\|CDD\|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		502
PF10615		83	DUF2470: Protein of unknown function (DUF2470); In	99.72
PF13883		170	Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase	99.45
COG0748		245	HugZ Putative heme iron utilization protein [Inorg	99.18
COG0748		245	HugZ Putative heme iron utilization protein [Inorg	92.19
PRK03467		144	hypothetical protein; Provisional	90.58
PF10446		458	DUF2457: Protein of unknown function (DUF2457); In	81.99

>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known	Back alignment and domain information

Probab=99.72  E-value=9.8e-18  Score=139.09  Aligned_cols=80  Identities=28%  Similarity=0.387  Sum_probs=64.2

Q ss_pred             Cchhhh-hhHHHHHHHhcCChhhHHHHHHHHHHhcCC-CCCceEEEeecCCCceEEEecCCcceEEEEecCCCCCCHHHH
Q 010741          398 PDVIAH-SAANIISRLKAGGEKTTQALKSLCWRTKGI-QVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSA  475 (502)
Q Consensus       398 PDpLAa-sEa~IIeHMNeDHadavdAL~~~a~~~~G~-~ve~ArmiGVDrlGfDLRV~sG~~~r~lR~pFp~patd~~dA  475 (502)
                      |||+++ .+++||+|||+||+   ++|.+||+++.|. .+.+|+|++||++||+|++   .+.+.+||+|++|+++.+++
T Consensus         2 ~dp~~~~~~~~ii~HMN~DH~---d~l~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~~~~~~ripF~~p~~~~~e~   75 (83)
T PF10615_consen    2 PDPLAPEAAARIIEHMNDDHA---DDLLLYARHYGGVPDAASARMTDIDRDGFDLRV---GGDQDVRIPFPPPVTDPEEA   75 (83)
T ss_dssp             --TTTTHHHHHHHHHHHHH-H---HHHHHHHHHHHT-SSSSS-EEEEEETTEEEEEE---TTTEEEEEE-SS---SHCCH
T ss_pred             cCcccHHHHHHHHHHHHHhHH---HHHHHHHHhcCCCCCCCCEEEEEEeccccEEEE---eCCcceEcCCCCCCCCHHHH
Confidence            688985 89999999999999   5669999998887 4799999999999999999   24489999999999999999


Q ss_pred             HHHHHHHc
Q 010741          476 ERQLNDLL  483 (502)
Q Consensus       476 RkaLveLL  483 (502)
                      |++|++|.
T Consensus        76 r~~lV~ma   83 (83)
T PF10615_consen   76 RDALVEMA   83 (83)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99999984

; PDB: 3GAS_D 3SWJ_A 2ARZ_B.

>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C	Back alignment and domain information

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03467 hypothetical protein; Provisional	Back alignment and domain information

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		502
3dnh_A		258	Uncharacterized protein ATU2129; APC6114, agrobact	99.97
2arz_A		247	Hypothetical protein PA4388; hypothetical protein,	99.96
3gas_A		259	Heme oxygenase; FMN-binding split barrel, oxidored	99.47
3swj_A		251	CHUZ, putative uncharacterized protein; heme oxyge	99.45
1xhn_A		184	CREG, cellular repressor of E1A-stimulated genes;	99.14
3gas_A		259	Heme oxygenase; FMN-binding split barrel, oxidored	98.67
3swj_A		251	CHUZ, putative uncharacterized protein; heme oxyge	98.57
3tgv_A		148	Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	98.1
1vl7_A		157	Hypothetical protein ALR5027; structural genomics,	96.93

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}	Back alignment and structure

Probab=99.97  E-value=3.1e-30  Score=249.96  Aligned_cols=230  Identities=15%  Similarity=0.109  Sum_probs=176.7

Q ss_pred             CcCCcCchhhccceEEEEcCeeEEEEeeeccCccccccccCCCCeeeccCCCEEEEecCchhHhhhhccCCCceEEEEec
Q 010741          108 GEEARLTAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGF  187 (502)
Q Consensus       108 ~~~~~lt~ae~aRTivE~N~ka~l~~~~~v~~e~H~~i~w~e~~y~~D~~Gdiyfqv~~d~~il~~~~~~~n~v~v~iG~  187 (502)
                      ..++....++.||+++.-+..|+|---.-....||-...    +|+.|+.|.+||-+.....=.+.+. .|.-|.+.|.-
T Consensus        21 ~~p~~~~~~~~ar~lL~~~~~g~LaTv~~~dG~P~~s~v----~y~~d~~g~~~~~~s~~~~h~~NL~-~dprvSl~V~~   95 (258)
T 3dnh_A           21 SAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTAT----NIGIEPDGTPFFFAAGLTLHARNME-TDARISVTLAP   95 (258)
T ss_dssp             -----CCHHHHHHHHHHHCCEEEEEEECTTTCCEEEEEE----ECEECTTSCEEEEEETTSHHHHHHH-HCCEEEEEECC
T ss_pred             CCCCCHHHHHHHHHHHHhCCEEEEEeccCCCCceEEEEE----EEEECCCCCEEEEEeCCcHHHHHHh-hCCCEEEEEec
Confidence            466777889999999999988887643323555666554    5889988999998887655555553 34445554431


Q ss_pred             chhHHHHhhhhccccccccccccCCCCCCCCCCCCCCccCccccccccccceecccCccccccccCcccccccccccchh
Q 010741          188 DTTEMIKEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPM  267 (502)
Q Consensus       188 d~~~~~~e~~~~~~s~~df~~~~~~~edsd~ed~~~~d~~~~~d~dy~~~~~~v~~d~~~~~~~l~dW~~~eT~~~~HP~  267 (502)
                      +.                                           .                                  
T Consensus        96 ~~-------------------------------------------~----------------------------------   98 (258)
T 3dnh_A           96 FG-------------------------------------------K----------------------------------   98 (258)
T ss_dssp             GG-------------------------------------------G----------------------------------
T ss_pred             CC-------------------------------------------C----------------------------------
Confidence            00                                           0                                  


Q ss_pred             HHHHHHHHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccccC-CCCCCccccccCCccccccccCCCCCC
Q 010741          268 YFAKKLSEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQYH-DVDNSKNVVVGNNQEDLHVINGHRNES  346 (502)
Q Consensus       268 yFak~l~~~~~~~~~~~md~P~~~lsI~G~lrpa~~eE~s~ir~~~~~~~~~-~~y~s~~~~~~~~~e~~~~i~~~~~~~  346 (502)
                                    .+++  ...||+|+|.++++..+|...++++|+.+|.. ..+    .                   
T Consensus        99 --------------~d~~--~~~rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~~----~-------------------  139 (258)
T 3dnh_A           99 --------------GDAL--TLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLY----L-------------------  139 (258)
T ss_dssp             --------------SCGG--GSCEEEEEEEEEECCGGGHHHHHHHHHHHCTTHHHH----T-------------------
T ss_pred             --------------CChh--hCCeEEEEEEEEEcCchHHHHHHHHHHHHCcChHHc----c-------------------
Confidence                          0011  13689999999999988889999999999832 223    1                   


Q ss_pred             CCCCCCCcccccCCCCCCCeEEEEEEeeeEEEEcCCcc-ceeeCHhhhhh--cCCchhhhhhHHHHHHHhcCChhhHHHH
Q 010741          347 EPSRNGSEESKKDDKPMNGTSFYKLEMTKIQPILAHAH-QAAVDIEDYRK--AQPDVIAHSAANIISRLKAGGEKTTQAL  423 (502)
Q Consensus       347 d~s~~g~~~~~~~~~~~~DFsFYRLe~erIrLIGGFGr-a~wVd~eDy~a--AePDpLAasEa~IIeHMNeDHadavdAL  423 (502)
                                     .++||.||||++++++|+||||+ ++||+++||.+  |+||+|++.+++||+|||+|| +++   
T Consensus       140 ---------------~~~df~l~rl~~~~v~~v~GFG~~a~~v~~~d~~~~~a~~d~l~~~~~~ii~hmN~dH-d~l---  200 (258)
T 3dnh_A          140 ---------------SLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIK-GEA---  200 (258)
T ss_dssp             ---------------SSTTEEEEEEEEEEEEEEC------CCCCHHHHSCCCTTCHHHHHHHHHHHHHHHTST-THH---
T ss_pred             ---------------cCCCeEEEEEEEeEEEEEcccCcccccCCHHHhcccCCCCchhHHHHHHHHHHHHhhH-HHH---
Confidence                           15899999999999999999999 99999999999  889999999999999999999 877   


Q ss_pred             HHHHHHhcCCCCCceEEEeecCCCceEEEecCCcceEEEEecCCCCCCHHHHHHHHHHHcCc
Q 010741          424 KSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFP  485 (502)
Q Consensus       424 ~~~a~~~~G~~ve~ArmiGVDrlGfDLRV~sG~~~r~lR~pFp~patd~~dARkaLveLL~p  485 (502)
                      .+||+ +.|+.+++|+|+|||++|||||+  |  .+.+||+|+   ++.+++|++|++|+..
T Consensus       201 ~~~~~-~~~~~~~~a~~~~vD~~G~dl~~--~--~~~~Ri~F~---~d~~~~r~~lv~m~~~  254 (258)
T 3dnh_A          201 SRLAV-LAGAKTGRWKITSIDPDGIDLAS--A--SDLARLWFA---ERVETLKQFEKALAQL  254 (258)
T ss_dssp             HHHHH-HTTCCCSSCEEEEEETTEEEEEC--S--SCEEEEECS---SCCCSHHHHHHHHHHH
T ss_pred             HHHHH-hCCCCCCcEEEEEEccCcCEEEE--C--CEEEEeeCC---CCHHHHHHHHHHHHHH
Confidence            88999 88888899999999999999997  3  379999999   8999999999999864

PyMOL of 3dnh

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1	Back alignment and structure

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}	Back alignment and structure

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}	Back alignment and structure

>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1	Back alignment and structure

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}	Back alignment and structure

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}	Back alignment and structure

>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}	Back alignment and structure

>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		502
d2arza1		238	b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps	2e-08

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238	Back information, alignment and structure


class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 8/126 (6%)

Query: 358 KDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGE 417
            D   ++   F+ L+  + + I        +  E    A P         +         
Sbjct: 113 ADYHRVHDFDFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFAGEAERGMVEH----MNS 168

Query: 418 KTTQALKSLCWRTKGIQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAER 477
               A+                + G+D+ GF LR+  G         F     +  +  +
Sbjct: 169 DHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQG----LHWLPFPAACGNPGAVRQ 224

Query: 478 QLNDLL 483
            L  L 
Sbjct: 225 ALVQLA 230

PyMOL of d2arza1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		502
d2arza1		238	Hypothetical protein PA4388 {Pseudomonas aeruginos	100.0
d1xhna1		170	Cellular repressor of E1A-stimulated genes CREG1 {	99.54
d1vl7a_		135	Hypothetical protein Alr5027 {Cyanobacterium (Nost	98.4

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.3e-34  Score=272.68  Aligned_cols=232  Identities=15%  Similarity=0.129  Sum_probs=187.4

Q ss_pred             chhhccceEEEEcCeeEEEEeeeccCccccccccCCCCeeeccCCCEEEEecCchhHhhhhccCCCceEEEEecchhHHH
Q 010741          114 TAAETSRTIIEVNSTATLMFTDFTNGGAHENIIWPDLPYVTDEHGNIYIQVKNEEDILQSLISENNFVQVIIGFDTTEMI  193 (502)
Q Consensus       114 t~ae~aRTivE~N~ka~l~~~~~v~~e~H~~i~w~e~~y~~D~~Gdiyfqv~~d~~il~~~~~~~n~v~v~iG~d~~~~~  193 (502)
                      ..|+.|||+++.++.|+|=  ++-.+ ..+.=+-+=.+|++|+.|++||=+.+...=-+++. .|+-|.++|..+..   
T Consensus         3 e~a~~aR~ll~~~~~~~Ls--T~~~~-~~G~P~~S~v~~a~d~~G~p~~~~S~la~Ht~NL~-~d~rvSL~v~~~~~---   75 (238)
T d2arza1           3 EAAKNARELLLKEYRAVLS--THSKK-WPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQ-ADPRCSMLVGERGA---   75 (238)
T ss_dssp             HHHHHHHHHHHHCSEEEEE--EECSS-STTCEEEEEEECEECTTSCEEEEEETTSHHHHHHH-HCCEEEEEEECTTC---
T ss_pred             HHHHHHHHHHhhCCeEEEE--ecCCC-CCCCceEEEEEEEECCCCCEEEEEecchHhhHhhh-cCCcEEEEEEcCCc---
Confidence            4689999999999998773  32111 11212223457999999999999999877777775 56667777742100   


Q ss_pred             HhhhhccccccccccccCCCCCCCCCCCCCCccCccccccccccceecccCccccccccCcccccccccccchhHHHHHH
Q 010741          194 KEMELAGLSEIDFGIDEIDDEDSDVEDEDEDEDEDEEDEDYDENWVNVLEDEDDEDEMLGDWAKLETMRSSHPMYFAKKL  273 (502)
Q Consensus       194 ~e~~~~~~s~~df~~~~~~~edsd~ed~~~~d~~~~~d~dy~~~~~~v~~d~~~~~~~l~dW~~~eT~~~~HP~yFak~l  273 (502)
                                                           + +                                        
T Consensus        76 -------------------------------------~-~----------------------------------------   77 (238)
T d2arza1          76 -------------------------------------E-D----------------------------------------   77 (238)
T ss_dssp             -------------------------------------S-S----------------------------------------
T ss_pred             -------------------------------------c-c----------------------------------------
Confidence                                                 0 0                                        


Q ss_pred             HHHhcCCcccccCCCCCeeEEEEEeeeccccchhhHHHHhhccc-cCCCCCCccccccCCccccccccCCCCCCCCCCCC
Q 010741          274 SEVISDDPIDWMEQPPAGITIQGLLRPALIEEHSDIQRHRSSNQ-YHDVDNSKNVVVGNNQEDLHVINGHRNESEPSRNG  352 (502)
Q Consensus       274 ~~~~~~~~~~~md~P~~~lsI~G~lrpa~~eE~s~ir~~~~~~~-~~~~y~s~~~~~~~~~e~~~~i~~~~~~~d~s~~g  352 (502)
                                +  +...|++++|.++++..+|...++.+|+.+| .+..+                       .      
T Consensus        78 ----------~--~~~~R~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~~~-----------------------~------  116 (238)
T d2arza1          78 ----------I--QAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADY-----------------------H------  116 (238)
T ss_dssp             ----------T--TSSCEEEEEEEEEECCHHHHHHHHHHHHHHCGGGTTC-----------------------B------
T ss_pred             ----------c--ccccceeeeeeeEecCchHHHHHHHHHHHhccchhhh-----------------------c------
Confidence                      0  1237999999999999999999999999998 34444                       1      


Q ss_pred             CcccccCCCCCCCeEEEEEEeeeEEEEcCCccceeeCHhhhhhcCCchhhhhhHHHHHHHhcCChhhHHHHHHHHHHhcC
Q 010741          353 SEESKKDDKPMNGTSFYKLEMTKIQPILAHAHQAAVDIEDYRKAQPDVIAHSAANIISRLKAGGEKTTQALKSLCWRTKG  432 (502)
Q Consensus       353 ~~~~~~~~~~~~DFsFYRLe~erIrLIGGFGra~wVd~eDy~aAePDpLAasEa~IIeHMNeDHadavdAL~~~a~~~~G  432 (502)
                               .++||.||||+|++++||||||+++||++++|..+.|++ +..+++||+|||+||+   ++|.+||+++.+
T Consensus       117 ---------~~~Df~~~~l~~~~~~~V~GFG~a~~i~~~~~~~~~~~~-~~~~~~ii~hmN~dH~---d~l~~~~~~~~~  183 (238)
T d2arza1         117 ---------RVHDFDFWVLQPVQWRFIGGFGAIHWLAAERVPLANPFA-GEAERGMVEHMNSDHA---AAIAHYVELAGL  183 (238)
T ss_dssp             ---------TTBBEEEEEEEEEEEEEECTTCCEEEEETTTSCCCCTTT-THHHHHHHHHHHHHCH---HHHHHHHHHHCC
T ss_pred             ---------ccCcEEEEEEeeeEEEEEcCCCccccccHHHhhhccchh-hhhhHHHHhhcchhhH---HHHHHHHHHhCC
Confidence                     279999999999999999999999999999998877765 5678899999999999   566999999888


Q ss_pred             CCCCceEEEeecCCCceEEEecCCcceEEEEecCCCCCCHHHHHHHHHHHcCc-ccC
Q 010741          433 IQVEEEAVIGVDSIGFDLRVCAGTQIQTLRFAFNTRATSEYSAERQLNDLLFP-RIH  488 (502)
Q Consensus       433 ~~ve~ArmiGVDrlGfDLRV~sG~~~r~lR~pFp~patd~~dARkaLveLL~p-r~~  488 (502)
                      ..+++|+|+|||++||||++.    .+.+||+|++|+++++++|++|++|+.. |.|
T Consensus       184 ~~~~~a~m~~iD~~G~~l~~~----~~~~ri~F~~~~~~~~~~r~~lv~l~~~ar~~  236 (238)
T d2arza1         184 PAHAAAQLAGIDTEGFHLRIG----QGLHWLPFPAACGNPGAVRQALVQLARAERWP  236 (238)
T ss_dssp             CCSSCCEEEEECSSEEEEEET----TEEEEEECSSCCCSHHHHHHHHHHHHHCSSCC
T ss_pred             CCCCceEEEEEccCcCEEEEC----CEEEEEeCCCcCCCHHHHHHHHHHHHHHhhcc
Confidence            888999999999999999983    2689999999999999999999999977 655

PyMOL of d2arza1

>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]}	Back information, alignment and structure