Citrus Sinensis ID: 010754
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | 2.2.26 [Sep-21-2011] | |||||||
| Q6GPC6 | 522 | F-box-like/WD repeat-cont | N/A | no | 0.834 | 0.802 | 0.479 | 1e-117 | |
| Q7SZM9 | 519 | F-box-like/WD repeat-cont | N/A | no | 0.828 | 0.801 | 0.475 | 1e-116 | |
| Q8BHJ5 | 514 | F-box-like/WD repeat-cont | yes | no | 0.818 | 0.799 | 0.473 | 1e-116 | |
| Q9BQ87 | 522 | F-box-like/WD repeat-cont | yes | no | 0.832 | 0.800 | 0.474 | 1e-116 | |
| Q4R8H1 | 569 | F-box-like/WD repeat-cont | N/A | no | 0.826 | 0.729 | 0.462 | 1e-114 | |
| O60907 | 577 | F-box-like/WD repeat-cont | no | no | 0.842 | 0.733 | 0.468 | 1e-114 | |
| Q9QXE7 | 527 | F-box-like/WD repeat-cont | no | no | 0.842 | 0.802 | 0.476 | 1e-114 | |
| Q9BZK7 | 514 | F-box-like/WD repeat-cont | no | no | 0.816 | 0.797 | 0.461 | 1e-114 | |
| Q95RJ9 | 700 | F-box-like/WD repeat-cont | yes | no | 0.527 | 0.378 | 0.592 | 7e-93 | |
| P38262 | 535 | SIR4-interacting protein | yes | no | 0.762 | 0.715 | 0.259 | 2e-29 |
| >sp|Q6GPC6|TB1RB_XENLA F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-b PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/467 (47%), Positives = 289/467 (61%), Gaps = 48/467 (10%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SI+S+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2 SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61
Query: 63 MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
E +++ D L +D + DV + RQ RDK
Sbjct: 62 AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDKLA-------- 104
Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
+ ++ N++ P K ES + E E G
Sbjct: 105 ---QQQQAAAAAAAAAAAAAATSANNQQPPAKNGESTANGE-------------ENGGHA 148
Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
+ M++ EIP S +L GH SEV CAW+P LLASGSGDSTARI
Sbjct: 149 LANNHTDMMEV-----DGDVEIPPSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 203
Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
W +++ +++G Q LVL+H G+ +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 204 WNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 257
Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
RIW+ +G+L TL +HKGPIF+LKWNKKG+++L+ DKT I+WD T E KQQF FHS
Sbjct: 258 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 317
Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
P LDVDW++N +FA+ STD I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCSD
Sbjct: 318 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 377
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
D+T KIW+MK D VHDL+ H+KEIYTI+WSPTG GTNNPN L+LA
Sbjct: 378 DMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLA 424
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F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation. Xenopus laevis (taxid: 8355) |
| >sp|Q7SZM9|TB1RA_XENLA F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/467 (47%), Positives = 290/467 (62%), Gaps = 51/467 (10%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SI+S+E+N+LV+RYLQESG HSAF G E+ I++ NI+G L PP ALI+ +QKGLQY+E
Sbjct: 2 SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALAPPAALISIIQKGLQYVE 61
Query: 63 MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
E +++ D L +D + DV + RQ RDK
Sbjct: 62 AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDK---------- 102
Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
+ +++ N++ P K E+ + E E G
Sbjct: 103 ----LAQQQTAAAAAAAAAAAATPNNQQPPAKNGENTANGE-------------ENGGHA 145
Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
+ M++ EIP+S +L GH SEV CAW+P LLASGSGDSTARI
Sbjct: 146 LANNHTDMMEV-----DGDVEIPSSKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 200
Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
W +++ +++G Q LVL+H G+ +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 201 WNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 254
Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
RIW+ +G+L TL +HKGPIF+LKWNKKG+++L+ DKT I+WD T E KQQF FHS
Sbjct: 255 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 314
Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
P LDVDW++N +FA+ STD I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCSD
Sbjct: 315 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 374
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
D+T KIW+MK D VHDL+ H+KEIYTI+WSPTG GTNNPN L+LA
Sbjct: 375 DMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLA 421
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F-box-like protein which acts as an integral component of the N-CoR transcriptional corepressor complex. Probably regulates transcription activation mediated by nuclear receptors. May mediate the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of the N-CoR complex, thereby allowing cofactor exchange and transcription activation. Xenopus laevis (taxid: 8355) |
| >sp|Q8BHJ5|TBL1R_MOUSE F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/467 (47%), Positives = 291/467 (62%), Gaps = 56/467 (11%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SI+S+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2 SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61
Query: 63 MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
E +++ D L +D + DV + RQ RDK + + H
Sbjct: 62 AEVSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAY---------RDK---LAQQHAA 109
Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
++ ++ E N +E ++ +M+ V +
Sbjct: 110 A---AAAAAAATNQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGD------------ 154
Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
EIP++ +L GH SEV CAW+P LLASGSGDSTARI
Sbjct: 155 -------------------VEIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARI 195
Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
W +++ +++G Q LVL+H G+ +KDVT+LDWN EGTLLATGSYDG A
Sbjct: 196 WNLSENSTSGPTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFA 249
Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
RIW+ +G+L TL +HKGPIF+LKWNKKG+++L+ DKT I+WD T E KQQF FHS
Sbjct: 250 RIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSA 309
Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
P LDVDW++N +FA+ STD I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCSD
Sbjct: 310 PALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSD 369
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
D+T KIW+MKQD VHDL+ H+KEIYTI+WSPTG GTNNPN L+LA
Sbjct: 370 DMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLA 416
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F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation. Mus musculus (taxid: 10090) |
| >sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/470 (47%), Positives = 295/470 (62%), Gaps = 52/470 (11%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SITS+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPSALISILQKGLQYVE 61
Query: 63 MEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIE 122
E +++ D +P++ ++ V + +V+ +++
Sbjct: 62 AEISINKDGTVFDS-----RPIESLSLIVAVIPDVVQMRQQAFG---------------- 100
Query: 123 HGRVKEKERLDREKERERDKERVENEKE----PEKQHESHPDKEMLTVQEEKVNSKPEEN 178
E+L +++ E K P + +P K +E VN EEN
Sbjct: 101 -------EKLTQQQASAAATEASAMAKAATMTPAAISQQNPPKN----REATVNG--EEN 147
Query: 179 GVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDST 238
G + +PM+I EIP + T+L GH SEV CAW+P LLASGSGDST
Sbjct: 148 GAHEINNHSKPMEI-----DGDVEIPPNKATVLRGHESEVFICAWNPVSDLLASGSGDST 202
Query: 239 ARIWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYD 295
ARIW + + ++ G Q LVL+H G +KDVT+LDWN +GTLLA GSYD
Sbjct: 203 ARIWNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLAMGSYD 256
Query: 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355
G ARIW+ NG+L TL +HKGPIF+LKWNKKG+Y+L+ DKT I+WD T E KQQF F
Sbjct: 257 GFARIWTENGNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPF 316
Query: 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415
HS P LDVDW+NN++FA+ STD I+VC++G + P+KTF GH EVN +KWDP+G LLAS
Sbjct: 317 HSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLAS 376
Query: 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
CSDD+T KIW+MKQD VHDL+ HSKEIYTI+WSPTG T+NPN ++LA
Sbjct: 377 CSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLA 426
|
F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange. Homo sapiens (taxid: 9606) |
| >sp|Q4R8H1|TBL1X_MACFA F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1 | Back alignment and function description |
|---|
Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/467 (46%), Positives = 288/467 (61%), Gaps = 52/467 (11%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SITS+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 112
Query: 63 MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
E +++ D L +D + DV + RQ +K
Sbjct: 113 AEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQRAFREK------------------- 153
Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
+ +++ +++ P K E+ + E ++KP E +
Sbjct: 154 ----LAQQQASAAAAAAAATTSASVSQQNPSKNREATVNGEENRAHSVNNHAKPME---I 206
Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
GE +IP+S T+L GH SEV CAW+P LLASGSGDSTARI
Sbjct: 207 DGE----------------VDIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARI 250
Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
W + + ++ G Q LVL+H G +KDVT+LDWN GTLLATGSYDG A
Sbjct: 251 WNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFA 304
Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
RIW+ +G+L TL +HKGPIF+LKWN+KG+Y+L+ DKT I+WD T E KQQF FHS
Sbjct: 305 RIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSA 364
Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
P LDVDW+NN++FA+ STD I+VC++G +RP+KTF GH EVN +KWDP+G LLASCSD
Sbjct: 365 PALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSD 424
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
D+T KIW+MKQ+ +HDL+ H+KEIYTI+WSPTG T+NPN ++LA
Sbjct: 425 DMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLA 471
|
F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange. Macaca fascicularis (taxid: 9541) |
| >sp|O60907|TBL1X_HUMAN F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/467 (46%), Positives = 285/467 (61%), Gaps = 44/467 (9%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SITS+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 53 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 112
Query: 63 MEANLSNSDVDMD-EDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEI 121
E +++ D L +D + DV + RQ +K
Sbjct: 113 AEISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAFREK------------------- 153
Query: 122 EHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVL 181
+ +++ +P K +E VN EEN
Sbjct: 154 ----LAQQQASAAAAAAAATAAATAATTTSAGVSHQNPSKN----REATVNG--EENRAH 203
Query: 182 QGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARI 241
+PM+I EIP+S T+L GH SEV CAW+P LLASGSGDSTARI
Sbjct: 204 SVNNHAKPMEI-----DGEVEIPSSKATVLRGHESEVFICAWNPVSDLLASGSGDSTARI 258
Query: 242 WTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
W + + ++ G Q LVL+H G +KDVT+LDWN GTLLATGSYDG A
Sbjct: 259 WNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNTNGTLLATGSYDGFA 312
Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
RIW+ +G+L TL +HKGPIF+LKWN+KG+Y+L+ DKT I+WD T E KQQF FHS
Sbjct: 313 RIWTEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSA 372
Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
P LDVDW+NN +FA+ STD I+VC++G +RP+KTF GH EVN +KWDP+G LLASCSD
Sbjct: 373 PALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSD 432
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
D+T KIW+MKQ+ +HDL+ H+KEIYTI+WSPTG T+NPN ++LA
Sbjct: 433 DMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLA 479
|
F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange. Homo sapiens (taxid: 9606) |
| >sp|Q9QXE7|TBL1X_MOUSE F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2 | Back alignment and function description |
|---|
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/468 (47%), Positives = 293/468 (62%), Gaps = 45/468 (9%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SITS+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVE 61
Query: 63 MEANLSNSDVDMDEDFSFL--QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
E + ++ED + +P++ ++ + +V+ +++ R+K
Sbjct: 62 AE-------ISINEDGTVFDGRPIESLSLIDAVMPDVVQTRQQAF---REK--------- 102
Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
+++ P + +P K E VN EENG
Sbjct: 103 ----LAQQQANAAAAAAAAAATATSTAATTPAAAAQQNPPKN----GEATVNG--EENGA 152
Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
+PM+I EIP S T+L GH SEV CAW+P LLASGSGDSTAR
Sbjct: 153 HAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVSDLLASGSGDSTAR 207
Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297
IW + + ++ G Q LVL+H G +KDVT+LDWN +GTLLATGSYDG
Sbjct: 208 IWNLNENSNGGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNSDGTLLATGSYDGF 261
Query: 298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357
ARIW+ +G+L TL +HKGPIF+LKWNKKG+Y+L+ DKT I+WD T E KQQF FHS
Sbjct: 262 ARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHS 321
Query: 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417
P LDVDW+NN +FA+ STD I+VC++G +RP+KTF GH EVN +KWDP+G LLASCS
Sbjct: 322 APALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCS 381
Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
DD+T KIW+MKQD VHDL+ HSKEIYTI+WSPTG T+NPN ++LA
Sbjct: 382 DDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLA 429
|
F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of corepressor complexes that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of transcription repressor complexes, thereby allowing cofactor exchange. Mus musculus (taxid: 10090) |
| >sp|Q9BZK7|TBL1R_HUMAN F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/468 (46%), Positives = 294/468 (62%), Gaps = 58/468 (12%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLE 62
SI+S+E+N+LV+RYLQESG HSAF G E+ I++ NI+G LVPP ALI+ +QKGLQY+E
Sbjct: 2 SISSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGALVPPAALISIIQKGLQYVE 61
Query: 63 MEANLSNSDVDMDEDFSFL--QPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
E V ++ED + +P++ ++ + +V+ +++ D+ +
Sbjct: 62 AE-------VSINEDGTLFDGRPIESLSLIDAVMPDVVQTRQQAYR---------DKLAQ 105
Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
+ ++ ++ E N +E ++ +M+ V +
Sbjct: 106 QQAAAAAAAAAAASQQGSAKNGENTANGEENGAHTIANNHTDMMEVDGD----------- 154
Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
EIP + +L GH SEV CAW+P LLASGSGDSTAR
Sbjct: 155 --------------------VEIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTAR 194
Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297
IW +++ +++G Q LVL+H G+ +KDVT+LDWN EGTLLATGSYDG
Sbjct: 195 IWNLSENSTSGSTQ------LVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGF 248
Query: 298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357
ARIW+ +G+L TL +HKGPIF+LKWNKKG+++L+ DKT I+WD T E KQQF FHS
Sbjct: 249 ARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHS 308
Query: 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417
P LDVDW++N +FA+ STD I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCS
Sbjct: 309 APALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCS 368
Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
DD+T KIW+MKQD VHDL+ H+KEIYTI+WSPTG GTNNPN L+LA
Sbjct: 369 DDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLA 416
|
F-box-like protein involved in the recruitment of the ubiquitin/19S proteasome complex to nuclear receptor-regulated transcription units. Plays an essential role in transcription activation mediated by nuclear receptors. Probably acts as integral component of the N-Cor corepressor complex that mediates the recruitment of the 19S proteasome complex, leading to the subsequent proteasomal degradation of N-Cor complex, thereby allowing cofactor exchange, and transcription activation. Homo sapiens (taxid: 9606) |
| >sp|Q95RJ9|EBI_DROME F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2 | Back alignment and function description |
|---|
Score = 341 bits (875), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 166/280 (59%), Positives = 199/280 (71%), Gaps = 15/280 (5%)
Query: 189 PMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT 248
PMDI E+ EIP S +L GH SEV CAW+P+ LLASGSGDSTARIW ++D
Sbjct: 334 PMDI-----DENIEIPESKARVLRGHESEVFICAWNPSRDLLASGSGDSTARIWDMSDAN 388
Query: 249 SNGGAQNGPLNVLVLKHV---KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305
+N N LVL+H G +KDVT+LDWN +G+LLATGSYDG ARIW T+G
Sbjct: 389 TNS-------NQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGSLLATGSYDGYARIWKTDG 441
Query: 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
L TL +HKGPIF+LKWNK G+Y+L+ DKT I+WD T + QQF FHS P LDVDW
Sbjct: 442 RLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDW 501
Query: 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
+ N +FA+ STD I+VC++G N PIKTF GH EVN +KW P G LLASCSDD+T KIW
Sbjct: 502 QTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIW 561
Query: 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
+M +D+ HDL+ HSKEIYTI+WSPTG GTNNPN LILA
Sbjct: 562 SMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILA 601
|
F-box-like component of E3 ubiquitin ligase complexes; involved in R7 photoreceptor cell differentiation, cone cell development and neuronal cell cycle control. E3 ubiquitin ligase complexes mediate ubiquitination and subsequent proteasomal degradation of target proteins. Required for specification of R7 photoreceptor cell fate in the eye by participating in the ubiquitination and subsequent proteasomal degradation of Tramtrack (ttk), a general inhibitor of photoreceptor differentiation. Required to block the S phase entry in the peripheral nervous system and central nervous system in a process that does not involve the degradation of ttk. Involved in cone cell development by preventing the transcriptional repression mediated by Su(H) on Dl, probably by participating in a E3 complex that contains sno and mediates the ubiquitination and subsequent proteasomal degradation of some component of the Su(H) repressor complex. Drosophila melanogaster (taxid: 7227) |
| >sp|P38262|SIF2_YEAST SIR4-interacting protein SIF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIF2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 199/471 (42%), Gaps = 88/471 (18%)
Query: 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNL---VPPRALITFVQKGLQ 59
SITSEELNYL++RY QE G SA L E + D +P L+ VQ+G+
Sbjct: 2 SITSEELNYLIWRYCQEMGHEVSALALQDETRV--LEFDEKYKEHIPLGTLVNLVQRGIL 59
Query: 60 YLEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGH 119
Y E E VD D S L L ++D ++ +
Sbjct: 60 YTESELM-----VDSKGDISALNEHHL-SEDFNLVQAL---------------------- 91
Query: 120 EIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENG 179
+++ EK PE E T++ ++K E+G
Sbjct: 92 ------------------------QIDKEKFPEISSEGR-----FTLETNSESNKAGEDG 122
Query: 180 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEG--HTSEVCACAWSPAG-SLLASGSGD 236
E+ + D + +S+ + V IL+ + + W+P S+LA G +
Sbjct: 123 ASTVERETQEDDTNSIDSSDDLD---GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKN 179
Query: 237 STARIWTIADGTSNGGAQNGPLNVLV-LKH---VKGRTNEKSKDVTTLDWNGEGTLLATG 292
S AR+ I + T G + L ++ L+H + + + + VT L W+ +G + TG
Sbjct: 180 SVARLARIVE-TDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 238
Query: 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352
+G+ R+W+ G L L+ H+ PI S+KWNK G ++++ + I+W+V + Q
Sbjct: 239 VENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 298
Query: 353 FEF------------HSGP---TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 397
FE HSG +DV+W ++ F I+V +I E P GH
Sbjct: 299 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH 358
Query: 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
G ++ ++++ T LL S SDD T +IW+ + HS+ I + W
Sbjct: 359 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 409
|
Antagonizes telomeric silencing in yeast. May recruit SIR4 to non-telomeric sites or repression. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| 255567933 | 582 | Polyadenylation factor subunit, putative | 0.926 | 0.798 | 0.766 | 0.0 | |
| 449448282 | 594 | PREDICTED: F-box-like/WD repeat-containi | 0.916 | 0.774 | 0.746 | 0.0 | |
| 356511919 | 560 | PREDICTED: F-box-like/WD repeat-containi | 0.916 | 0.821 | 0.766 | 0.0 | |
| 225438892 | 590 | PREDICTED: F-box-like/WD repeat-containi | 0.916 | 0.779 | 0.736 | 0.0 | |
| 356563556 | 614 | PREDICTED: F-box-like/WD repeat-containi | 0.920 | 0.752 | 0.695 | 0.0 | |
| 356511917 | 607 | PREDICTED: F-box-like/WD repeat-containi | 0.920 | 0.761 | 0.701 | 0.0 | |
| 224115052 | 532 | predicted protein [Populus trichocarpa] | 0.864 | 0.815 | 0.752 | 0.0 | |
| 356541727 | 558 | PREDICTED: F-box-like/WD repeat-containi | 0.916 | 0.824 | 0.731 | 0.0 | |
| 297797649 | 617 | WD-40 repeat family protein [Arabidopsis | 0.920 | 0.748 | 0.649 | 0.0 | |
| 15240710 | 613 | WD-40 repeat family protein [Arabidopsis | 0.924 | 0.756 | 0.649 | 0.0 |
| >gi|255567933|ref|XP_002524944.1| Polyadenylation factor subunit, putative [Ricinus communis] gi|223535779|gb|EEF37441.1| Polyadenylation factor subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/484 (76%), Positives = 413/484 (85%), Gaps = 19/484 (3%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
M++ITS ELNYLVFRYLQESG HSAF LGYEAGINKC IDGN+VPP ALITFVQKG+QY
Sbjct: 1 MTTITSSELNYLVFRYLQESGFTHSAFALGYEAGINKCTIDGNMVPPGALITFVQKGIQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
LEMEANLSNSD D+DEDFSFLQP+DLITKDV ELRQM+K+KKKNL+ DR+KE + D+ +
Sbjct: 61 LEMEANLSNSDADVDEDFSFLQPLDLITKDVYELRQMIKDKKKNLHKDREKEKEKDKNKD 120
Query: 121 IEHGRVKEKERLDREKE--------RERDKERVENEKEPEKQHESHPDKEMLTVQEEKVN 172
E R E+ER ++ E+D+ERVE +KE EKQHE + D+E + Q +K N
Sbjct: 121 KEFEREHERERTRIREKERQEREKESEKDRERVEKDKEREKQHEDNTDRETVADQADKNN 180
Query: 173 SKPE---------ENGVLQ--GEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCAC 221
K E EN + G GPEPMD++ TS S++ EIP+SDV ILEGHTSEVCAC
Sbjct: 181 VKHENIKHENVKHENVKHEENGTGGPEPMDVSVTSTSQACEIPSSDVMILEGHTSEVCAC 240
Query: 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281
AWSP GSLLASGSGDSTARIW IA+GTS G QNGPLNVLVLKHVKGRTNEKSKDVTTLD
Sbjct: 241 AWSPTGSLLASGSGDSTARIWAIAEGTSRSGVQNGPLNVLVLKHVKGRTNEKSKDVTTLD 300
Query: 282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341
WNGEGTLLATGSYDGQARIW+T+G+LK TLSKHKGPIFSLKWNKKGD+LLTGSCDKTAIV
Sbjct: 301 WNGEGTLLATGSYDGQARIWNTSGELKTTLSKHKGPIFSLKWNKKGDFLLTGSCDKTAIV 360
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401
WDVKTEEWKQQFEFHSGP LDVDWRNN SFATSSTDNMIYVC++G+NRP+KTFAGHQGEV
Sbjct: 361 WDVKTEEWKQQFEFHSGPILDVDWRNNTSFATSSTDNMIYVCRVGDNRPVKTFAGHQGEV 420
Query: 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461
NCVKWDPTGSLLASCSDD++AKIW+MKQDKYVHDLREHSKEIYTIRWSPTG GTNNPNQQ
Sbjct: 421 NCVKWDPTGSLLASCSDDISAKIWSMKQDKYVHDLREHSKEIYTIRWSPTGPGTNNPNQQ 480
Query: 462 LILA 465
L+LA
Sbjct: 481 LVLA 484
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448282|ref|XP_004141895.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Cucumis sativus] gi|449513123|ref|XP_004164237.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/501 (74%), Positives = 420/501 (83%), Gaps = 41/501 (8%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
M+SITS ELNYLVFRYLQESG +HSAF LGYEAGINKC+IDGNLVPP AL+T VQKGLQY
Sbjct: 1 MTSITSVELNYLVFRYLQESGFIHSAFALGYEAGINKCSIDGNLVPPGALVTVVQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
LEMEANLSN+D D+DEDFSFLQP+DLITKDV ELRQ++K+K+K+L D++K+ D+D+ E
Sbjct: 61 LEMEANLSNNDTDIDEDFSFLQPLDLITKDVHELRQIIKDKRKSLVKDKEKDKDLDKELE 120
Query: 121 IEHGRVKEKERLDREKER------------------------------------ERDKER 144
E GRV+EKER + E ER E+D+++
Sbjct: 121 SERGRVREKERRESEVERGRAREKERLEREKERVEREKERLEREKERLEREKEHEKDRDK 180
Query: 145 VENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIP 204
+E +KE EKQHE+ D++M+ Q+EKV++ ENGV EPMDI+TTS S+S EI
Sbjct: 181 IEKDKEREKQHENFTDRDMVMDQDEKVHANQGENGVF-----GEPMDISTTSTSQSCEIS 235
Query: 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264
+SDVTIL+GHTSEVCACAW+P GSLLASGSGDSTARIW IADG+S G Q+GPLNVLVLK
Sbjct: 236 SSDVTILQGHTSEVCACAWNPTGSLLASGSGDSTARIWPIADGSSRSGGQSGPLNVLVLK 295
Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN 324
HVKGRTNEKSKDVTTLDWNG+GTLLATGSYDGQARIWSTNG+L+ TLSKHKGPIFSLKWN
Sbjct: 296 HVKGRTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSTNGELRSTLSKHKGPIFSLKWN 355
Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
KKGDYLLTGSCDKTAIVWDVK EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK
Sbjct: 356 KKGDYLLTGSCDKTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 415
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444
IGE RPIKTFAGHQGEVNCVKWDPTGSLLASCSDD+TAKIW+MKQDKYV+DLREHSKEIY
Sbjct: 416 IGETRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDKYVYDLREHSKEIY 475
Query: 445 TIRWSPTGSGTNNPNQQLILA 465
TIRWSPTG GTNNPNQQL+LA
Sbjct: 476 TIRWSPTGPGTNNPNQQLVLA 496
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511919|ref|XP_003524669.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/467 (76%), Positives = 405/467 (86%), Gaps = 7/467 (1%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
M+SI+S ELNYLV+RYLQESG H+AF GYEAGINKC+IDGNLVP AL+TFVQKGLQY
Sbjct: 1 MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFVQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
EMEANLSN D D++EDFSFLQP+DLITKDV ELRQM+ E++K L +R KE + + E
Sbjct: 61 FEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEH--E 118
Query: 121 IEHGRVKEKERLDREKERE--RDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEEN 178
E RV+EK+R +REKE+E +D++++EN+KE E+QH +EM E++V K EEN
Sbjct: 119 GERVRVREKDRREREKEKEVVKDRKKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEEN 178
Query: 179 GVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDST 238
G + GPEPMDI+TTS S+ IP+SDVTILEGHTSEVCACAWSP GSLLASGSGDST
Sbjct: 179 GAV---GGPEPMDISTTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDST 235
Query: 239 ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298
ARIWTIA+G G++NGPLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQA
Sbjct: 236 ARIWTIAEGRCKPGSENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQA 295
Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
RIW+TNG+LK TLSKHKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSG
Sbjct: 296 RIWTTNGELKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSG 355
Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418
PTLDVDWRNNVSFATSSTDNMI+VCKIGE PIKTF GHQGEVNCVKWDPTGSLLASCSD
Sbjct: 356 PTLDVDWRNNVSFATSSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCSD 415
Query: 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
D+TAKIW+MKQD Y+HDLREHSKEIYTIRWSPTG GTNNPN +L+LA
Sbjct: 416 DITAKIWSMKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLA 462
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438892|ref|XP_002283852.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1X-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/497 (73%), Positives = 413/497 (83%), Gaps = 37/497 (7%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
MSSITS ELNYLVFRYL ESG HSAF LGYEAGINKC IDGN+VPP ALITFVQKGLQ+
Sbjct: 1 MSSITSAELNYLVFRYLHESGFTHSAFSLGYEAGINKCPIDGNMVPPGALITFVQKGLQF 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
+EMEANLSNSD D+D+DFSFLQP+DLITKDV +LRQM++EKK+NL ++DKE+D + HE
Sbjct: 61 VEMEANLSNSDTDVDDDFSFLQPLDLITKDVHQLRQMIREKKRNLQKEKDKESD--KEHE 118
Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEK--------------------------- 153
+ RV+EKERL+R++ +ER +++ E++ +
Sbjct: 119 LVRARVREKERLERQERQERQEKQERQERQEIQERQERQERQERQEKEKEREKEKEREKD 178
Query: 154 -----QHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDV 208
QH+ D EM T QE+ V K +ENGV GPEPMDI+T+S ++ EIP+SDV
Sbjct: 179 KEREKQHDDQIDTEMTTDQEDVVTVKHDENGV---SGGPEPMDISTSSTFQACEIPSSDV 235
Query: 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT QNGP NVLVLKHVKG
Sbjct: 236 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTCRSSVQNGPSNVLVLKHVKG 295
Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD 328
RTNEKSKDVTTLDWNG+GTLLATGSYDGQARIWSTNG+L+ TLSKHKGPIFSLKWN+KGD
Sbjct: 296 RTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSTNGELRSTLSKHKGPIFSLKWNRKGD 355
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388
YLLTGSCDKTAIVWDVKTEEWKQQFEFH+GPTLDVDWRNNVSFATSSTDNMIYVCKIGEN
Sbjct: 356 YLLTGSCDKTAIVWDVKTEEWKQQFEFHAGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 415
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
RPIKTF+GHQGEVNCVKWDPTG LLASCSDD+TAKIW++KQ+KY+HDLREH+KEIYTIRW
Sbjct: 416 RPIKTFSGHQGEVNCVKWDPTGQLLASCSDDITAKIWSIKQEKYLHDLREHAKEIYTIRW 475
Query: 449 SPTGSGTNNPNQQLILA 465
SPTG GTNNPNQ L+LA
Sbjct: 476 SPTGQGTNNPNQPLVLA 492
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563556|ref|XP_003550027.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/519 (69%), Positives = 410/519 (78%), Gaps = 57/519 (10%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
M+SI+S ELNYLV+RYLQESG H+AF GYEAGINKC+IDGNLVP AL+TF+QKGLQY
Sbjct: 1 MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFIQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGD------------ 108
EMEANLSN D D++EDFSFLQP+DLITKDV ELRQM+ E++K L +
Sbjct: 61 FEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEGE 120
Query: 109 ---------RDKENDVD-----RGHEIEHGRVK-----EKERLDREKERERD-------- 141
R++E +V+ R E+E R + EK+R +REKE E+D
Sbjct: 121 RVRVREKDRREREKEVEKDRRERDKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEV 180
Query: 142 --------------KERVENEKEPEKQHESHPDKEMLTVQEEKVNS-KPEENGVLQGEKG 186
+E+VEN+KE E+QH ++M+ E++V K EENG + G
Sbjct: 181 EKERRERQKEVVKDREKVENDKEREQQHGDQTVRKMVIDHEDRVPVVKLEENGAV---GG 237
Query: 187 PEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD 246
PE MDI+TTS S+ FEIP+SDVTILEGHTSEVCACAWSP GSLLASGSGDSTARIWTIA+
Sbjct: 238 PESMDISTTSTSQLFEIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAE 297
Query: 247 GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD 306
G G+QN PLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQARIW+TNG+
Sbjct: 298 GRCKPGSQNSPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGE 357
Query: 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
LK TLSKHKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSGPTLDVDWR
Sbjct: 358 LKSTLSKHKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWR 417
Query: 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
NNVSFATSSTDNMIYVCKIGE RPIKTFAGHQGEVNCVKWDP+GSLLASCSDD+TAKIW+
Sbjct: 418 NNVSFATSSTDNMIYVCKIGETRPIKTFAGHQGEVNCVKWDPSGSLLASCSDDITAKIWS 477
Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
MKQD Y+HDLREHSKEIYTIRWSPTG GTNNPN +L+LA
Sbjct: 478 MKQDTYLHDLREHSKEIYTIRWSPTGPGTNNPNHKLVLA 516
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511917|ref|XP_003524668.1| PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/512 (70%), Positives = 406/512 (79%), Gaps = 50/512 (9%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
M+SI+S ELNYLV+RYLQESG H+AF GYEAGINKC+IDGNLVP AL+TFVQKGLQY
Sbjct: 1 MASISSAELNYLVYRYLQESGFTHAAFTFGYEAGINKCSIDGNLVPSGALVTFVQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGD------------ 108
EMEANLSN D D++EDFSFLQP+DLITKDV ELRQM+ E++K L +
Sbjct: 61 FEMEANLSNCDADLEEDFSFLQPLDLITKDVHELRQMISERRKKLQKERKKEFEKEHEGE 120
Query: 109 --RDKENDV-----------------------DRGHEIEHGRVK-----EKERLDREKE- 137
R +E D +R E+E R + EK+R ++EKE
Sbjct: 121 RVRVREKDRREREKEVEKERREREKEVEKDRREREKEVEKDRREREKEVEKDRREKEKEV 180
Query: 138 ----RERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIA 193
RE++KE++EN+KE E+QH +EM E++V K EENG + GPEPMDI+
Sbjct: 181 EKDRREKEKEKIENDKEREQQHGDQTVREMFVDHEDRVPVKLEENGAV---GGPEPMDIS 237
Query: 194 TTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA 253
TTS S+ IP+SDVTILEGHTSEVCACAWSP GSLLASGSGDSTARIWTIA+G G+
Sbjct: 238 TTSTSQLCGIPSSDVTILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGRCKPGS 297
Query: 254 QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK 313
+NGPLNVLVLKHV+G+TNEKSKDVTTLDWNGEGTLLATGSYDGQARIW+TNG+LK TLSK
Sbjct: 298 ENGPLNVLVLKHVRGKTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWTTNGELKSTLSK 357
Query: 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT 373
HKGPIFSLKWNKKGDYLLTGSCD+TAIVWDVK EEWKQQFEFHSGPTLDVDWRNNVSFAT
Sbjct: 358 HKGPIFSLKWNKKGDYLLTGSCDQTAIVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFAT 417
Query: 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433
SSTDNMI+VCKIGE PIKTF GHQGEVNCVKWDPTGSLLASCSDD+TAKIW+MKQD Y+
Sbjct: 418 SSTDNMIHVCKIGETHPIKTFTGHQGEVNCVKWDPTGSLLASCSDDITAKIWSMKQDTYL 477
Query: 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
HDLREHSKEIYTIRWSPTG GTNNPN +L+LA
Sbjct: 478 HDLREHSKEIYTIRWSPTGPGTNNPNHKLVLA 509
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115052|ref|XP_002332225.1| predicted protein [Populus trichocarpa] gi|222831838|gb|EEE70315.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/465 (75%), Positives = 379/465 (81%), Gaps = 31/465 (6%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
M+SITS ELNYLVFRYLQESG HSAFVLGYEAGINKC IDGN+VPP ALI+FVQKGLQY
Sbjct: 1 MTSITSVELNYLVFRYLQESGFTHSAFVLGYEAGINKCTIDGNMVPPGALISFVQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
LEMEANLSNSD D+DEDFSFLQP+DLITKDV ELRQ++KEKKKNL D + +
Sbjct: 61 LEMEANLSNSDADVDEDFSFLQPLDLITKDVNELRQIIKEKKKNLRKDEKRRRRRKTKTK 120
Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
+ L + ++ E TV+ V P E
Sbjct: 121 TKTKTKIWSSMLSQCRDGEA------------------------TVKSHFVFLFPLE--- 153
Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
GPEPMDI+T S S++ EIP+SDV ILEGHTSEVCACAWSP GSLLASGSGDSTAR
Sbjct: 154 ----FGPEPMDISTASTSQTCEIPSSDVMILEGHTSEVCACAWSPTGSLLASGSGDSTAR 209
Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 300
IWTIA+GTS AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI
Sbjct: 210 IWTIAEGTSRSVAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 269
Query: 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360
WST+G+LK TLSKHKGPIF+LKWNKKGDYLLTGSCDKTAIVWDV+ EEWKQQFEFHSGPT
Sbjct: 270 WSTDGELKTTLSKHKGPIFTLKWNKKGDYLLTGSCDKTAIVWDVRAEEWKQQFEFHSGPT 329
Query: 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420
LDVDWRNNVSFATSSTDNMIYVCK+GE RPIKTFAGHQGEVNCVKWDPTGS LASCSDD+
Sbjct: 330 LDVDWRNNVSFATSSTDNMIYVCKVGETRPIKTFAGHQGEVNCVKWDPTGSWLASCSDDI 389
Query: 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
+AKIW+MKQ+KYVHDLREHSKEIYTIRWSPTG GTNNPNQ L+LA
Sbjct: 390 SAKIWSMKQEKYVHDLREHSKEIYTIRWSPTGPGTNNPNQPLVLA 434
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541727|ref|XP_003539325.1| PREDICTED: F-box-like/WD repeat-containing protein ebi-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/465 (73%), Positives = 384/465 (82%), Gaps = 5/465 (1%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
M+S+TS ELN LVFRY QESG H+AF G EA INK IDG L+PP ALIT VQKGLQY
Sbjct: 1 MTSVTSVELNLLVFRYFQESGFTHAAFAFGNEASINKSPIDGKLIPPGALITLVQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHE 120
LEMEANLSN D D+DEDFSFLQP+DLITKDV ELR+MV E++K L +R+KE++ + +E
Sbjct: 61 LEMEANLSNCDADLDEDFSFLQPLDLITKDVHELRKMVNERRKILQKNRNKESE--KENE 118
Query: 121 IEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKEMLTVQEEKVNSKPEENGV 180
G +KEK R +REKE ERD E+ EN KE E+QH + +EM+ QE+ V K EN
Sbjct: 119 GGRGWLKEKGRHEREKECERDGEKAENLKELEQQHYNQSCREMVIDQEDLVTVKHAENKA 178
Query: 181 LQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTAR 240
G EPMD++TTS + +IP SDV +LEGHTSEVCACAWSP GSLLASGSGDSTAR
Sbjct: 179 F---GGTEPMDVSTTSTLQPCQIPRSDVIVLEGHTSEVCACAWSPTGSLLASGSGDSTAR 235
Query: 241 IWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 300
IWTIA+G NGP NVLVLKHV+G+TNEKS DVTTLDWNGEGTLLATGSYDGQARI
Sbjct: 236 IWTIAEGRCKSALLNGPPNVLVLKHVRGKTNEKSNDVTTLDWNGEGTLLATGSYDGQARI 295
Query: 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360
W+TNG+LK TLSKHKGPIFSLKWNKKGDY+LTGSCD+TAIVWDVK EEWKQQFEFHSG T
Sbjct: 296 WTTNGELKSTLSKHKGPIFSLKWNKKGDYILTGSCDQTAIVWDVKAEEWKQQFEFHSGWT 355
Query: 361 LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420
LDVDWRNNVSFATSSTD I+VCKIGEN PI+TF GHQ EVNC+KWDPTGSLLASCSDD+
Sbjct: 356 LDVDWRNNVSFATSSTDTKIHVCKIGENLPIRTFVGHQSEVNCIKWDPTGSLLASCSDDM 415
Query: 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
TAKIW+MKQDKY+H+ REHSKEIYTIRWSPTG GTNNPN+ L+LA
Sbjct: 416 TAKIWSMKQDKYLHEFREHSKEIYTIRWSPTGPGTNNPNKNLVLA 460
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797649|ref|XP_002866709.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297312544|gb|EFH42968.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/522 (64%), Positives = 391/522 (74%), Gaps = 60/522 (11%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
MSS+TS ELN+LVFRYLQESG HSAF LGYEAGINK NIDGN+VPP ALI FVQKGLQY
Sbjct: 1 MSSLTSVELNFLVFRYLQESGFTHSAFTLGYEAGINKSNIDGNMVPPGALIKFVQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNG-----DRDKEND- 114
+EMEANLSNS+VD+DEDFSF QP+DLI+KDV EL+ M++EKK+ DR KEND
Sbjct: 61 MEMEANLSNSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDREKERDRSKENDK 120
Query: 115 -VDRGHEIEHGRVKEKERLDREK------------------------------------E 137
V+R HE + R KEK+R +++K E
Sbjct: 121 EVEREHEGDRNRAKEKDRHEKQKEREREREKLEREKEREREKIEREKEREREKMEREIFE 180
Query: 138 RERDKERVENEKEPEKQ-----------HESH---PDKEMLTVQEEKVNSKPEENGVLQG 183
RE+D+ ++E E+E E++ HE D+EM+ Q +K N+ E+G
Sbjct: 181 REKDRLKLEKEREMEREREREKIEREKCHEKQLGDADREMVIDQTDKENAGDLEHGR--- 237
Query: 184 EKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 243
G EPMDI T S++ IP+SDV ILEGHTSEVCACAWSP+ SLLASGSGD+TARIW+
Sbjct: 238 STGAEPMDIVMTPTSQTSHIPSSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWS 297
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
I +G+ +N L+LKH KG++NEKSKDVTTLDWNGEGTLLATGS DGQARIW+
Sbjct: 298 IPEGSFRSVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWNL 357
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
NGDL TLSKHKGPIFSLKWNKKGDYLLTGS D+TA+VWDVK EEWKQQFEFHSGPTLDV
Sbjct: 358 NGDLISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDV 417
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
DWRNNVSFATSSTD+MIY+CKIGE RP K FAGHQGEVNCVKWDPTGSLLASCSDD TAK
Sbjct: 418 DWRNNVSFATSSTDSMIYLCKIGETRPAKIFAGHQGEVNCVKWDPTGSLLASCSDDSTAK 477
Query: 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
IWN+KQ+ +VHDLREH+KEIYTIRWSPTG GTNNPN+QL LA
Sbjct: 478 IWNIKQNTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLA 519
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240710|ref|NP_201533.1| WD-40 repeat family protein [Arabidopsis thaliana] gi|9758431|dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gi|16323188|gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gi|23506023|gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gi|332010945|gb|AED98328.1| WD-40 repeat family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/516 (64%), Positives = 388/516 (75%), Gaps = 52/516 (10%)
Query: 1 MSSITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQY 60
MSS+TS ELN+LVFRYLQESG H+AF LGYEAGINK NIDGN+VPP ALI FVQKGLQY
Sbjct: 1 MSSLTSVELNFLVFRYLQESGFTHAAFTLGYEAGINKSNIDGNMVPPGALIKFVQKGLQY 60
Query: 61 LEMEANLSNSDVDMDEDFSFLQPMDLITKDVCELRQMVKEKKKNLNG-----DRDKEND- 114
+EMEANLSNS+VD+DEDFSF QP+DLI+KDV EL+ M++EKK+ DR KEND
Sbjct: 61 MEMEANLSNSEVDIDEDFSFFQPLDLISKDVKELQDMLREKKRKERDMEKERDRSKENDK 120
Query: 115 -VDRGHEIEHGRVKEKERLDREK------------------------------------E 137
V+R HE + R KEK+R +++K E
Sbjct: 121 GVEREHEGDRNRAKEKDRHEKQKEREREREKLEREKEREREKIEREKEREREKMEREIFE 180
Query: 138 RERDKERVENEKEPEKQHE--------SHPDKEMLTVQEEKVNSKPEENGVLQGEKGPEP 189
RE+D+ ++E E+E E++ E SH +K++ E V + ++ G G EP
Sbjct: 181 REKDRLKLEKEREIEREREREKIEREKSH-EKQLGDADREMVIDQTDKEIAGDGSTGAEP 239
Query: 190 MDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTS 249
MDI T S++ IPNSDV ILEGHTSEVCACAWSP+ SLLASGSGD+TARIW+I +G+
Sbjct: 240 MDIVMTPTSQTSHIPNSDVRILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSF 299
Query: 250 NGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC 309
+N L+LKH KG++NEKSKDVTTLDWNGEGTLLATGS DGQARIW+ NG+L
Sbjct: 300 KAVHTGRNINALILKHAKGKSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWTLNGELIS 359
Query: 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369
TLSKHKGPIFSLKWNKKGDYLLTGS D+TA+VWDVK EEWKQQFEFHSGPTLDVDWRNNV
Sbjct: 360 TLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWRNNV 419
Query: 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429
SFATSSTD+MIY+CKIGE RP KTF GHQGEVNCVKWDPTGSLLASCSDD TAKIWN+KQ
Sbjct: 420 SFATSSTDSMIYLCKIGETRPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQ 479
Query: 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILA 465
+VHDLREH+KEIYTIRWSPTG GTNNPN+QL LA
Sbjct: 480 STFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLA 515
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 502 | ||||||
| TAIR|locus:2158232 | 613 | HOS15 "high expression of osmo | 0.611 | 0.500 | 0.719 | 3.5e-123 | |
| ZFIN|ZDB-GENE-040426-1192 | 511 | tbl1xr1 "transducin (beta)-lik | 0.515 | 0.506 | 0.600 | 1.5e-110 | |
| UNIPROTKB|E1BV27 | 523 | TBL1X "Uncharacterized protein | 0.567 | 0.544 | 0.554 | 3e-110 | |
| MGI|MGI:1336172 | 527 | Tbl1x "transducin (beta)-like | 0.567 | 0.540 | 0.561 | 4.9e-110 | |
| RGD|1563868 | 527 | Tbl1x "transducin (beta)-like | 0.567 | 0.540 | 0.561 | 4.9e-110 | |
| UNIPROTKB|B7TCI5 | 528 | TBL1X "Transducin beta-like 1" | 0.567 | 0.539 | 0.561 | 4.9e-110 | |
| UNIPROTKB|F1NYZ8 | 517 | TBL1XR1 "Uncharacterized prote | 0.517 | 0.502 | 0.594 | 8e-110 | |
| MGI|MGI:2441730 | 514 | Tbl1xr1 "transducin (beta)-lik | 0.513 | 0.501 | 0.595 | 1.3e-109 | |
| UNIPROTKB|Q9BZK7 | 514 | TBL1XR1 "F-box-like/WD repeat- | 0.513 | 0.501 | 0.595 | 1.7e-109 | |
| RGD|1560053 | 514 | Tbl1xr1 "transducin (beta)-lik | 0.513 | 0.501 | 0.595 | 2.7e-109 |
| TAIR|locus:2158232 HOS15 "high expression of osmotically responsive genes 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1211 (431.4 bits), Expect = 3.5e-123, P = 3.5e-123
Identities = 228/317 (71%), Positives = 251/317 (79%)
Query: 152 EKQHESH---PDKEMLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDV 208
EK HE D+EM+ Q +K E G G G EPMDI T S++ IPNSDV
Sbjct: 206 EKSHEKQLGDADREMVIDQTDK-----EIAG--DGSTGAEPMDIVMTPTSQTSHIPNSDV 258
Query: 209 TILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
ILEGHTSEVCACAWSP D+TARIW+I +G+ +N L+LKH KG
Sbjct: 259 RILEGHTSEVCACAWSPSASLLASGSGDATARIWSIPEGSFKAVHTGRNINALILKHAKG 318
Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD 328
++NEKSKDVTTLDWNGEGTLLATGS DGQARIW+ NG+L TLSKHKGPIFSLKWNKKGD
Sbjct: 319 KSNEKSKDVTTLDWNGEGTLLATGSCDGQARIWTLNGELISTLSKHKGPIFSLKWNKKGD 378
Query: 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN 388
YLLTGS D+TA+VWDVK EEWKQQFEFHSGPTLDVDWRNNVSFATSSTD+MIY+CKIGE
Sbjct: 379 YLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDSMIYLCKIGET 438
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
RP KTF GHQGEVNCVKWDPTGSLLASCSDD TAKIWN+KQ +VHDLREH+KEIYTIRW
Sbjct: 439 RPAKTFTGHQGEVNCVKWDPTGSLLASCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRW 498
Query: 449 SPTGSGTNNPNQQLILA 465
SPTG GTNNPN+QL LA
Sbjct: 499 SPTGPGTNNPNKQLTLA 515
|
|
| ZFIN|ZDB-GENE-040426-1192 tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 879 (314.5 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
Identities = 161/268 (60%), Positives = 199/268 (74%)
Query: 202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
EIP S +L GH SEV CAW+P DSTARIW +++ ++ G Q L
Sbjct: 152 EIPASKAMVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSESSTGGSTQ------L 205
Query: 262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
VL+H ++ G+ +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L TL +HKGPI
Sbjct: 206 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 265
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
F+LKWNKKG+++L+ DKT I+WD T E KQQF FHS P LDVDW++N +FA+ STD
Sbjct: 266 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 325
Query: 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
I+VCK+G+ RPIKTF GH EVN +KWDPTG+LLASCSDD+T K+W+MKQD VHDL+
Sbjct: 326 CIHVCKLGQERPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKLWSMKQDTCVHDLQA 385
Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILAR 466
HSKEIYTI+WSPTG GTNNPN L+LAR
Sbjct: 386 HSKEIYTIKWSPTGPGTNNPNANLMLAR 413
|
|
| UNIPROTKB|E1BV27 TBL1X "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 876 (313.4 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
Identities = 167/301 (55%), Positives = 209/301 (69%)
Query: 168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
E VN EENG +PM+I EIP + T+L GH SEV CAW+P
Sbjct: 138 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPNKATVLRGHESEVFICAWNPVS 190
Query: 228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
DSTARIW + + +++G Q LVL+H ++ G +KDVT+LDWN
Sbjct: 191 DLLASGSGDSTARIWNLNENSNSGSTQ------LVLRHCIREGGHDVPSNKDVTSLDWNS 244
Query: 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
+GTLLATGSYDG ARIW+ +G+L TL +HKGPIF+LKWNKKG+Y+L+ DKT I+WD
Sbjct: 245 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 304
Query: 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
T E KQQF FHS P LDVDW+NN +FA+ STD I+VC++G +RP+KTF GH EVN +
Sbjct: 305 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 364
Query: 405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
KWDP+G LLASCSDD+T KIW+MKQD VHDL+ HSKEIYTI+WSPTG GT+NPN ++L
Sbjct: 365 KWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTSNPNSNIML 424
Query: 465 A 465
A
Sbjct: 425 A 425
|
|
| MGI|MGI:1336172 Tbl1x "transducin (beta)-like 1 X-linked" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 169/301 (56%), Positives = 208/301 (69%)
Query: 168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
E VN EENG +PM+I EIP S T+L GH SEV CAW+P
Sbjct: 142 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 194
Query: 228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
DSTARIW + + SNGG+ LVL+H ++ G +KDVT+LDWN
Sbjct: 195 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 248
Query: 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
+GTLLATGSYDG ARIW+ +G+L TL +HKGPIF+LKWNKKG+Y+L+ DKT I+WD
Sbjct: 249 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308
Query: 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
T E KQQF FHS P LDVDW+NN +FA+ STD I+VC++G +RP+KTF GH EVN +
Sbjct: 309 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 368
Query: 405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
KWDP+G LLASCSDD+T KIW+MKQD VHDL+ HSKEIYTI+WSPTG T+NPN ++L
Sbjct: 369 KWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIML 428
Query: 465 A 465
A
Sbjct: 429 A 429
|
|
| RGD|1563868 Tbl1x "transducin (beta)-like 1 X-linked" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 169/301 (56%), Positives = 208/301 (69%)
Query: 168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
E VN EENG +PM+I EIP S T+L GH SEV CAW+P
Sbjct: 142 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 194
Query: 228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
DSTARIW + + SNGG+ LVL+H ++ G +KDVT+LDWN
Sbjct: 195 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 248
Query: 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
+GTLLATGSYDG ARIW+ +G+L TL +HKGPIF+LKWNKKG+Y+L+ DKT I+WD
Sbjct: 249 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 308
Query: 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
T E KQQF FHS P LDVDW+NN +FA+ STD I+VC++G +RP+KTF GH EVN +
Sbjct: 309 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 368
Query: 405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
KWDP+G LLASCSDD+T KIW+MKQD VHDL+ HSKEIYTI+WSPTG T+NPN ++L
Sbjct: 369 KWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIML 428
Query: 465 A 465
A
Sbjct: 429 A 429
|
|
| UNIPROTKB|B7TCI5 TBL1X "Transducin beta-like 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
Identities = 169/301 (56%), Positives = 208/301 (69%)
Query: 168 EEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPXX 227
E VN EENG +PM+I EIP S T+L GH SEV CAW+P
Sbjct: 143 EATVNG--EENGAHAINNHSKPMEI-----DGDVEIPPSKATVLRGHESEVFICAWNPVS 195
Query: 228 XXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VK--GRTNEKSKDVTTLDWNG 284
DSTARIW + + SNGG+ LVL+H ++ G +KDVT+LDWN
Sbjct: 196 DLLASGSGDSTARIWNLNEN-SNGGSTQ-----LVLRHCIREGGHDVPSNKDVTSLDWNS 249
Query: 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
+GTLLATGSYDG ARIW+ +G+L TL +HKGPIF+LKWNKKG+Y+L+ DKT I+WD
Sbjct: 250 DGTLLATGSYDGFARIWTEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDA 309
Query: 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404
T E KQQF FHS P LDVDW+NN +FA+ STD I+VC++G +RP+KTF GH EVN +
Sbjct: 310 HTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAI 369
Query: 405 KWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464
KWDP+G LLASCSDD+T KIW+MKQD VHDL+ HSKEIYTI+WSPTG T+NPN ++L
Sbjct: 370 KWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPATSNPNSSIML 429
Query: 465 A 465
A
Sbjct: 430 A 430
|
|
| UNIPROTKB|F1NYZ8 TBL1XR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 877 (313.8 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 160/269 (59%), Positives = 201/269 (74%)
Query: 202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
EIP + +L GH SEV CAW+P DSTARIW +++ +++G Q L
Sbjct: 156 EIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQ------L 209
Query: 262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
VL+H ++ G+ +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L TL +HKGPI
Sbjct: 210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
F+LKWNKKG+++L+ DKT I+WD T E KQQF FHS P LDVDW++N +FA+ STD
Sbjct: 270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329
Query: 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCSDD+T KIW+MKQD VHDL+
Sbjct: 330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDSCVHDLQA 389
Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILARL 467
H+KEIYTI+WSPTG GTNNPN L+LA L
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLASL 418
|
|
| MGI|MGI:2441730 Tbl1xr1 "transducin (beta)-like 1X-linked receptor 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 159/267 (59%), Positives = 201/267 (75%)
Query: 202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
EIP++ +L GH SEV CAW+P DSTARIW +++ +++G Q L
Sbjct: 156 EIPSNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQ------L 209
Query: 262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
VL+H ++ G+ +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L TL +HKGPI
Sbjct: 210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
F+LKWNKKG+++L+ DKT I+WD T E KQQF FHS P LDVDW++N +FA+ STD
Sbjct: 270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329
Query: 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCSDD+T KIW+MKQD VHDL+
Sbjct: 330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389
Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILA 465
H+KEIYTI+WSPTG GTNNPN L+LA
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLA 416
|
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| UNIPROTKB|Q9BZK7 TBL1XR1 "F-box-like/WD repeat-containing protein TBL1XR1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 159/267 (59%), Positives = 200/267 (74%)
Query: 202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
EIP + +L GH SEV CAW+P DSTARIW +++ +++G Q L
Sbjct: 156 EIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQ------L 209
Query: 262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
VL+H ++ G+ +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L TL +HKGPI
Sbjct: 210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
F+LKWNKKG+++L+ DKT I+WD T E KQQF FHS P LDVDW++N +FA+ STD
Sbjct: 270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329
Query: 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCSDD+T KIW+MKQD VHDL+
Sbjct: 330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389
Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILA 465
H+KEIYTI+WSPTG GTNNPN L+LA
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLA 416
|
|
| RGD|1560053 Tbl1xr1 "transducin (beta)-like 1 X-linked receptor 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
Identities = 159/267 (59%), Positives = 200/267 (74%)
Query: 202 EIPNSDVTILEGHTSEVCACAWSPXXXXXXXXXXDSTARIWTIADGTSNGGAQNGPLNVL 261
EIP + +L GH SEV CAW+P DSTARIW +++ +++G Q L
Sbjct: 156 EIPPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQ------L 209
Query: 262 VLKH-VK--GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318
VL+H ++ G+ +KDVT+LDWN EGTLLATGSYDG ARIW+ +G+L TL +HKGPI
Sbjct: 210 VLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPI 269
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDN 378
F+LKWNKKG+++L+ DKT I+WD T E KQQF FHS P LDVDW++N +FA+ STD
Sbjct: 270 FALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDM 329
Query: 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
I+VCK+G++RPIKTF GH EVN +KWDPTG+LLASCSDD+T KIW+MKQD VHDL+
Sbjct: 330 CIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQA 389
Query: 439 HSKEIYTIRWSPTGSGTNNPNQQLILA 465
H+KEIYTI+WSPTG GTNNPN L+LA
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLA 416
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9BQ87 | TBL1Y_HUMAN | No assigned EC number | 0.4744 | 0.8326 | 0.8007 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_Genewise1_v1.C_2050013 | hypothetical protein (532 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.XII.1531.1 | hypothetical protein (314 aa) | • | 0.445 | |||||||
 | estExt_fgenesh4_pg.C_LG_VIII0799 | SubName- Full=Putative uncharacterized protein; (321 aa) | • | 0.430 | |||||||
 | estExt_Genewise1_v1.C_LG_X6506 | hypothetical protein (370 aa) | • | 0.422 | |||||||
 | eugene3.00180717 | hypothetical protein (345 aa) | • | 0.415 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 502 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-58 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-50 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-48 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-35 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-12 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-10 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 9e-10 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 1e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-07 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 3e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 6e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 3e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 193 bits (493), Expect = 5e-58
Identities = 80/247 (32%), Positives = 122/247 (49%), Gaps = 19/247 (7%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
L+GHT V A+SP G LLA+GSGD T ++W + G +L+ +K
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLK 48
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKK 326
G + V + + +GT LA+GS D R+W G+ TL+ H + S+ ++
Sbjct: 49 G----HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD 104
Query: 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKI 385
G L + S DKT VWDV+T + H+ V + + +F A+SS D I + +
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
Query: 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
+ + T GH GEVN V + P G L S S D T K+W++ K + LR H + +
Sbjct: 165 RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224
Query: 446 IRWSPTG 452
+ +SP G
Sbjct: 225 VAFSPDG 231
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 3e-50
Identities = 68/252 (26%), Positives = 120/252 (47%), Gaps = 19/252 (7%)
Query: 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL 263
+ L+GHT V A S G+ LASGS D T R+W + G +
Sbjct: 40 TGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-------------CV 86
Query: 264 KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLK 322
+ + G T V+++ ++ +G +L++ S D ++W G TL H + S+
Sbjct: 87 RTLTGHT----SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA 142
Query: 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIY 381
++ G ++ + S D T +WD++T + H+G V + + +SS+D I
Sbjct: 143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202
Query: 382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441
+ + + + T GH+ VN V + P G LLAS S+D T ++W+++ + V L H+
Sbjct: 203 LWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN 262
Query: 442 EIYTIRWSPTGS 453
+ ++ WSP G
Sbjct: 263 SVTSLAWSPDGK 274
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 2e-48
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
V L GHTS V + A+SP G +L+S S D T ++W + G + L+
Sbjct: 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK----------CLTTLRG-- 133
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNK 325
+ V ++ ++ +GT +A+ S DG ++W KC TL+ H G + S+ ++
Sbjct: 134 -----HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GKCVATLTGHTGEVNSVAFSP 187
Query: 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCK 384
G+ LL+ S D T +WD+ T + H V + + A+ S D I V
Sbjct: 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
+ ++T +GH V + W P G LAS S D T +IW+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 6e-35
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Query: 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 365
L+ TL H G + + ++ G L TGS D T VWD++T E + + H+GP DV
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
+ A+ S+D I + + ++T GH V+ V + P G +L+S S D T K+W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 426 NMKQDKYVHDLREHSKEIYTIRWSPTG 452
+++ K + LR H+ + ++ +SP G
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDG 147
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-29
Identities = 71/255 (27%), Positives = 118/255 (46%), Gaps = 25/255 (9%)
Query: 206 SDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264
++ L GHT V + A+SP G L+ASGS D T R+W ++ G
Sbjct: 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----------------- 231
Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLK 322
+ T D ++ +G+LLA+GS DG R+W TLS H + S+
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291
Query: 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNNVS--FATSSTDN 378
++ G L +GS D T +WD++T + H GP + + + S + S D
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351
Query: 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438
I + + +P+KT GH V V + P G +++S S D T ++W++ + +L
Sbjct: 352 TIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 439 HSKEIYTIRWSPTGS 453
H+ + ++ +SP G
Sbjct: 411 HTSRVTSLDFSPDGK 425
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 7e-29
Identities = 79/312 (25%), Positives = 136/312 (43%), Gaps = 38/312 (12%)
Query: 180 VLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTA 239
+L + + + +P+ +L GH + + A+SP G LL SGS D T
Sbjct: 30 LLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTI 89
Query: 240 RIWTIADGT----SNGGAQNGPLNVLVLKHVKGRT------------------------- 270
++W + +G S G + ++ L L G +
Sbjct: 90 KLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIR 149
Query: 271 --NEKSKDVTTLDWNGEGTLLATGS-YDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKK 326
S+ VT+L ++ +G LLA+GS DG ++W G TL+ H P+ SL ++
Sbjct: 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209
Query: 327 GD-YLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
G + +GS D T +WD+ T + + HS + + A+ S+D I +
Sbjct: 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWD 269
Query: 385 I-GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--YVHDLREHSK 441
+ + ++T +GH V V + P G LLAS S D T ++W+++ K L+ H
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Query: 442 EIYTIRWSPTGS 453
+ ++ +SP GS
Sbjct: 330 PVSSLSFSPDGS 341
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-25
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 23/230 (10%)
Query: 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
+ L GH+ V + +SP GSLLASGS D T R+W + +S +L+ + G
Sbjct: 236 STLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSS------------LLRTLSG 282
Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNK 325
S V ++ ++ +G LLA+GS DG R+W TL H+GP+ SL ++
Sbjct: 283 H----SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338
Query: 326 KGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVC 383
G L++G S D T +WD++T + + E HS L V + + ++ STD + +
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLW 397
Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433
+ ++ GH V + + P G LAS S D T ++W++K
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.8 bits (216), Expect = 1e-18
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 11/200 (5%)
Query: 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSL 321
+LK + + S + +L + G LL D + + L H+ I S+
Sbjct: 15 LLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLS---SLLLRGHEDSITSI 71
Query: 322 KWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDW----RNNVSFATSS 375
++ G+ LL+GS D T +WD+ E K H + N++ A+SS
Sbjct: 72 AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSS 131
Query: 376 TDNMIYVCKI-GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYV 433
D + + + + I+T GH V + + P G LLAS S D T K+W+++ K +
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 434 HDLREHSKEIYTIRWSPTGS 453
L H+ + ++ +SP G
Sbjct: 192 STLAGHTDPVSSLAFSPDGG 211
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (165), Expect = 3e-12
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 26/175 (14%)
Query: 187 PEPMDIATTSASESFEIPNSD------VTILEGHTSEVCACAWSPAGSLLASG-SGDSTA 239
P+ +A+ S+ + + + + L+GH V + ++SP GSLL SG S D T
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI 353
Query: 240 RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 299
R+W + G +T E +V ++ ++ +G ++++GS DG R
Sbjct: 354 RLWDLRTGKPL------------------KTLEGHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 300 IWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353
+W + G L L H + SL ++ G L +GS D T +WD+KT F
Sbjct: 396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-10
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
+KT GH G V V + P G LAS SDD T K+W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 9e-10
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 242
+ L+GHT V + A+SP G+LLASGS D T R+W
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 13/160 (8%)
Query: 202 EIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNV 260
++ V L+GHTS + ++P S +LASGS D T R+W I + P +
Sbjct: 61 QMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120
Query: 261 LVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIF 319
L K ++ +DWN ++ + +D IW + + +
Sbjct: 121 L---------KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS 171
Query: 320 SLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSG 358
SLKWN KG+ LL+G+C K + D + +E F H G
Sbjct: 172 SLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDG 210
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-09
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
+ ++T GH G V V + P G+LLAS SDD T ++W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-09
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 242
+ L+GHT V + A+SP G LASGS D T ++W
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-07
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
+G+L TL H GP+ S+ ++ G YL +GS D T +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-07
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 305 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
G L TL H GP+ S+ ++ G+ L +GS D T VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 3e-06
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 7 EELNYLVFRYLQESGLLHSAFVLGYEA 33
EELN L++ YL +SG +A E+
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 6e-06
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 33/192 (17%)
Query: 211 LEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
L+GHT +V ++ P A ++LAS D +W + G + V V+K
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----------VEVIKCH--- 167
Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFS-LKWNKKG 327
S +T+L+WN +G+LL T S D + I +G + ++ H W K+
Sbjct: 168 ----SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK 223
Query: 328 DYLLTGSCDKT----AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD-NMIYV 382
D ++T C K+ ++WD + K + T+D+D + + D N++Y+
Sbjct: 224 DLIITLGCSKSQQRQIMLWDTR----KMASPYS---TVDLDQSSALFIPFFDEDTNLLYI 276
Query: 383 CKIGENRPIKTF 394
GE I+ F
Sbjct: 277 GSKGEGN-IRCF 287
|
Length = 493 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWS 302
+ VT++ ++ +G LLA+GS DG R+W
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 9e-05
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWS 302
+ VT++ ++ +G LA+GS DG ++W
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 4 ITSEELNYLVFRYLQESGLLHSAFVLGYEAGINK 37
I+ ELN L+ YL +G +A L E+G++
Sbjct: 1 ISRSELNRLILEYLLRNGYEETAETLQKESGLSL 34
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.98 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.98 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.94 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.93 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.91 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.89 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.89 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.88 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.87 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.87 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.86 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.86 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.84 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.84 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.84 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.84 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.82 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.81 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.79 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.79 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.79 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.79 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.78 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.78 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.77 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.76 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.76 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.75 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.74 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.74 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.73 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.7 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.68 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.68 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.68 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.68 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.65 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.65 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.63 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.57 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.56 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.56 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.54 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.52 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.51 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.49 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.48 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.47 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.45 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.45 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.43 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.41 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.4 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.4 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.39 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.39 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.36 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.36 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.33 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.3 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.26 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.26 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.25 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.25 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.24 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 99.24 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.2 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.18 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.17 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.15 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.15 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.14 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.13 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.12 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.11 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.11 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.11 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.1 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.1 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.04 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.02 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.99 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.98 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.96 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.93 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.92 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.92 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.91 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.9 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.89 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.88 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.87 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.86 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.85 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.84 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.83 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.83 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.8 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.79 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.77 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.72 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.7 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.69 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.68 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.68 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.62 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.59 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.57 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.52 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.51 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.51 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.51 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.51 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.5 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.49 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.48 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.48 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.46 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.45 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.43 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.41 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.37 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.34 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.31 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.24 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.22 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.22 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.17 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.08 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.07 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.06 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.05 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.98 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.94 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.94 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.93 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.89 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.87 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.87 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.82 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.82 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.81 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.79 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.77 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.73 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.71 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.71 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.7 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.67 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.67 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.64 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.63 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.6 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.58 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.57 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.56 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.54 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.54 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.51 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.49 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.39 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.31 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.3 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.3 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.28 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.16 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.15 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.12 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.06 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.06 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.04 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.01 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.98 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.94 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.92 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.88 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.8 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.74 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.73 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.71 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.69 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.61 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.6 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.6 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.59 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.53 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.53 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.24 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.16 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.1 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.06 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.94 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.9 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.87 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.83 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.65 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.59 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.59 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.58 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.5 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.3 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.14 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.1 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.09 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.09 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.04 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.95 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.9 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.88 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.75 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.74 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.73 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.71 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.67 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.64 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.62 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.57 | |
| PRK10115 | 686 | protease 2; Provisional | 94.52 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.29 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.26 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.16 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.06 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.02 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.9 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.51 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.42 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 93.37 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.19 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 93.17 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.14 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.03 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.02 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.86 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.8 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.59 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.37 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 92.31 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.19 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.18 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.1 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 92.04 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.02 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.5 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 90.58 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.25 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.23 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.06 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.05 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.61 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.5 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 88.88 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 88.85 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 88.76 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.63 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 88.34 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 88.09 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.06 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 88.02 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 87.9 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 87.46 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 87.23 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 87.21 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 87.16 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 86.94 | |
| PLN02153 | 341 | epithiospecifier protein | 86.35 | |
| PRK10115 | 686 | protease 2; Provisional | 86.19 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 85.63 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 85.4 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 84.66 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 84.07 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 83.62 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 83.36 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 82.72 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 82.01 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 81.7 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 81.66 | |
| PLN02193 | 470 | nitrile-specifier protein | 81.65 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 81.64 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 81.57 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 81.3 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 80.76 |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=557.51 Aligned_cols=431 Identities=54% Similarity=0.871 Sum_probs=337.1
Q ss_pred CCCcchhhHHHHHHHHhcCCcchhhcccccccCccCCCCCCCCCchhHHHHHHhhhhhhhhhhccCCCCcccCccccccc
Q 010754 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQ 82 (502)
Q Consensus 3 ~lts~evn~li~rYlqE~g~~~sA~~~~~e~~~~~~~~~~~~ip~~aLv~l~qkgl~y~~~e~~~~~~~~~~~~~~~~~~ 82 (502)
|||||||||||||||||+||.||||+|++|++|+++++..+.|||||||+||||||||+|+|.++.+++...+++++++.
T Consensus 2 sitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is~~n~~~~~vp~gaLi~ivQKGLqY~E~E~~~~~~~~v~d~~~e~~~ 81 (524)
T KOG0273|consen 2 SITSDEVNFLVWRYLQESGFSHSAFTFGIETGISQSNINGSLVPPGALISIVQKGLQYVEAEKHLNESGVVFDAPIESLS 81 (524)
T ss_pred cccHHHHHHHHHHHHHHcCcceeeEEeeecccccccCCCccccChHHHHHHHHhhhhhhheeeeeccCCccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred cCcccchhhHHHHHHHHHHhhccCCCCCCccccccCccccccchhhHhHHHHHHHHHhhhhhhcccCCccccCCCCCCch
Q 010754 83 PMDLITKDVCELRQMVKEKKKNLNGDRDKENDVDRGHEIEHGRVKEKERLDREKERERDKERVENEKEPEKQHESHPDKE 162 (502)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (502)
+.++..+++.++++....++...+.... +. +..+.++. ....++.....++ ..+..
T Consensus 82 ~~d~v~~~~~ql~~~~~~e~~s~~~~~~----------------~~--~~~~~~~~----~s~s~~ag~~~~~--d~a~~ 137 (524)
T KOG0273|consen 82 LEDLVMEDVVQLRQQAFREKLSEEQFCA----------------QL--KIAQDKES----GSTSTPAGSISQR--DGAKT 137 (524)
T ss_pred hhhhccccccccchhhhhhhccccchhh----------------hh--hhhhhhcc----CCcCCCCCccccc--cchhh
Confidence 9999999888876432222111110000 00 00000000 0000000000000 00000
Q ss_pred hhhhhhhhccCCCccccccccccCCCCcccccCCCCceeeeCCCceEEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEE
Q 010754 163 MLTVQEEKVNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARI 241 (502)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~i 241 (502)
+.. ..+ .+.+..........++.+. +..+||+..++.+. |+.+|++++|+|-.. +|++|+.|.+.++
T Consensus 138 ~er----~~n--~eed~a~~I~~~~e~~~i~-----~~~~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari 205 (524)
T KOG0273|consen 138 GER----TSN--GEEDKAMSIDVHTEPMEID-----GGVEIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARI 205 (524)
T ss_pred cch----hcc--cccCccccccccccceeec-----ccccccccceeecc-CCCceEEEecCchhhhhhhccCCccceee
Confidence 000 000 0000000001112222222 24568888888888 999999999999654 9999999999999
Q ss_pred EecCCCCccCCCCCCCceeEEEeeec---CccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCe
Q 010754 242 WTIADGTSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPI 318 (502)
Q Consensus 242 w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v 318 (502)
|++........ ....+++.. ......+..|++++|+.+|..||+|+.||.++||+..+.+..++..|++||
T Consensus 206 ~~l~e~~~~~~------~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI 279 (524)
T KOG0273|consen 206 WNLLENSNIGS------TQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPI 279 (524)
T ss_pred eeehhhccccc------hhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCce
Confidence 99986221111 111223222 233445678999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC
Q 010754 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ 398 (502)
Q Consensus 319 ~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~ 398 (502)
.+++|+..|+||++++.|+++.+||..++.+.+.|..|..+..+|.|..+..|++++.|+.|++|.+....|+.++.+|.
T Consensus 280 ~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~ 359 (524)
T KOG0273|consen 280 FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH 359 (524)
T ss_pred EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCcc--EEEEeecCceEEEE
Q 010754 399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ--LILARLIPYFLYWI 475 (502)
Q Consensus 399 ~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~--l~las~~~~~~iw~ 475 (502)
++|++|.|+|.|.+|+|||+|++++||++....+.+.+.+|+..|+.+.|+|+|....+++.. ++.++.+.++++|+
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 999999999999999999999999999999999999999999999999999999988777654 55566678899994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=317.13 Aligned_cols=246 Identities=27% Similarity=0.484 Sum_probs=220.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.||.++|.|++|+|+|..|++|+.|.++|+||+.+.... ....+|...|.|++|+|||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------~t~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------FTCKGHKNWVLCVAWSPDG 169 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------eeecCCccEEEEEEECCCc
Confidence 44568899999999999999999999999999999999886532 2334678899999999999
Q ss_pred CEEEEEECCCeEEEEECC--CceEEEecCccCCeEEEEEec-----CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC
Q 010754 287 TLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~-----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 359 (502)
+.||+|+.||.|++||.. +.....+.+|+..|++++|.| ..++|++++.||+|+|||+..+.++..+.+|..+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 999999999999999965 345568899999999999976 5579999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEEcCCCcceE-----------------------------------------------
Q 010754 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK----------------------------------------------- 392 (502)
Q Consensus 360 v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~----------------------------------------------- 392 (502)
|+++.|-.++.+++++.|++|++|+...+....
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 999999999999999999999999977653321
Q ss_pred --------------------------------EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC
Q 010754 393 --------------------------------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 393 --------------------------------~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~ 440 (502)
.+.+|..-|+.+.||||++++|++|-|.+|++||.++|+.+.+|++|-
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 233788889999999999999999999999999999999999999999
Q ss_pred CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 441 KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 441 ~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+|+.++||.|.+ .++.+|.|.++++|..
T Consensus 410 ~~VYqvawsaDsR-------LlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 410 AAVYQVAWSADSR-------LLVSGSKDSTLKVWDV 438 (480)
T ss_pred ceeEEEEeccCcc-------EEEEcCCCceEEEEEe
Confidence 9999999999998 7788888999999953
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=316.41 Aligned_cols=263 Identities=25% Similarity=0.382 Sum_probs=237.3
Q ss_pred CcccccCCCCceeeeCC----CceEEeccCCCceEEEEEcCC--CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 189 PMDIATTSASESFEIPN----SDVTILEGHTSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 189 ~~~~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~~~~~p~--~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
...+++++-++...++. +.+.+|+||++.|.++.|+|. +..||||+.||++++|++.+...
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~------------- 253 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETP------------- 253 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcc-------------
Confidence 34455655555555543 447899999999999999996 56899999999999999987543
Q ss_pred EeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEE
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~ 341 (502)
.....+|...|..++|+|+|++|+++++|.+-++||++. .......+|...|.+++|+|+|..+++|+.|..-+|
T Consensus 254 ----l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 254 ----LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred ----hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 334456678899999999999999999999999999875 455567899999999999999999999999999999
Q ss_pred EEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcC-CCCEEEEEeCC
Q 010754 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDD 419 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp-~g~~las~s~d 419 (502)
||+++|+++..+.+|..+|.+|.|+|++. +++|+.|++++|||++..+.+.++.+|.+-|+.|+|+| .|.+|+|+|.|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 99999999999999999999999999876 89999999999999999999999999999999999999 78999999999
Q ss_pred CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
++++||...++.+++.+.||.+.|.++..+|+|+ .+++++.|.++++|.
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~-------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQ-------AIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccchhhcCCccceEEEEeccCCc-------eEEEeccCceeeecc
Confidence 9999999999999999999999999999999998 788899999999994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=301.30 Aligned_cols=272 Identities=28% Similarity=0.491 Sum_probs=232.1
Q ss_pred ccccccCCCCcccccCCCCceeeeCC----CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCC
Q 010754 180 VLQGEKGPEPMDIATTSASESFEIPN----SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN 255 (502)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~ 255 (502)
++...-+|....+++++.+...+++. .+..+.+||..-|.|++|+|||+.||+|+.||+|++||-.+++...
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g---- 193 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIG---- 193 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCccc----
Confidence 34444566666788888888877753 4578899999999999999999999999999999999998887532
Q ss_pred CCceeEEEeeecCccccCCCCeEEEEECC-----CCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCE
Q 010754 256 GPLNVLVLKHVKGRTNEKSKDVTTLDWNG-----EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY 329 (502)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~ 329 (502)
....+|.+.|++++|.| ..++||+++.||.|+|||+. +.++..+.+|+.+|+|++|--+ .+
T Consensus 194 ------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gl 260 (480)
T KOG0271|consen 194 ------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GL 260 (480)
T ss_pred ------------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ce
Confidence 34457789999999975 57899999999999999987 5678899999999999999754 58
Q ss_pred EEEEecCCeEEEEEcCCCceEEEEee------------------------------------------------------
Q 010754 330 LLTGSCDKTAIVWDVKTEEWKQQFEF------------------------------------------------------ 355 (502)
Q Consensus 330 l~s~~~d~~i~~wd~~~~~~~~~~~~------------------------------------------------------ 355 (502)
|++|+.|++|++|+...|.+.+.+.+
T Consensus 261 iySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 99999999999998766544333332
Q ss_pred -------------------------ccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC
Q 010754 356 -------------------------HSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 409 (502)
Q Consensus 356 -------------------------~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~ 409 (502)
|..-|..+.|+|+.+ +++++.|..|++|+.++|+.+.+|+||-+.|..++|+.|
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD 420 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD 420 (480)
T ss_pred EecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC
Confidence 334467778878765 778899999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 410 g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.++|++||.|.++++|++++.++...+.+|...|+++.|+|||. .+..++.|..+++|.
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~-------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ-------RVASGGKDKVLRLWR 479 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc-------eeecCCCceEEEeec
Confidence 99999999999999999999999999999999999999999999 666666777788884
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=304.72 Aligned_cols=240 Identities=25% Similarity=0.374 Sum_probs=221.0
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC--CCEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLLA 290 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~--g~~l~ 290 (502)
|-+.+|..|.|+++++.|||||.+|.+++|+..+... ...+.+|...|.++.|+|. +..+|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~-----------------~~~l~gH~~~v~~~~fhP~~~~~~la 235 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL-----------------LQTLRGHTSRVGAAVFHPVDSDLNLA 235 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce-----------------eEEEeccccceeeEEEccCCCcccee
Confidence 5568899999999999999999999999999887642 2334567889999999996 67999
Q ss_pred EEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC
Q 010754 291 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (502)
Q Consensus 291 s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~ 369 (502)
+|+.||++++|++++ ..+..+.+|...|..++|+|+|++|+|++.|.+.++||++++..+....+|...|.+++|.+++
T Consensus 236 t~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG 315 (459)
T KOG0272|consen 236 TASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG 315 (459)
T ss_pred eeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC
Confidence 999999999999987 7788899999999999999999999999999999999999999998899999999999998876
Q ss_pred E-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEE
Q 010754 370 S-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (502)
Q Consensus 370 ~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~ 448 (502)
. +++|+.|..-+|||+++++++..+.+|..+|.+|.|+|+|..|||||.|++++|||++..+++..+.+|..-|+.|+|
T Consensus 316 SL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 316 SLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred ceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence 6 567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 449 SPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+|.+. ..|++|+.|+++++|.
T Consensus 396 ~p~~g------~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 396 SPQEG------YFLVTASYDNTVKIWS 416 (459)
T ss_pred cccCC------eEEEEcccCcceeeec
Confidence 99332 3889999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=261.98 Aligned_cols=261 Identities=21% Similarity=0.377 Sum_probs=225.4
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCC-----------------------CceeEEE
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNG-----------------------PLNVLVL 263 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~-----------------------~~~~~~~ 263 (502)
..++|+||.+.|.++.|++|+++|+++|.||.+.|||.-+......+... ...++.+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34899999999999999999999999999999999998765432211100 0111111
Q ss_pred e--------eecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec-CCCEEEEE
Q 010754 264 K--------HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTG 333 (502)
Q Consensus 264 ~--------~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~ 333 (502)
. .......+|.+.+.|+.|-+| ..|++++.|.+..+||++ +.....+.+|.+.|.++.++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 1 122335678899999999874 578899999999999987 577889999999999999999 99999999
Q ss_pred ecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCC
Q 010754 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTG 410 (502)
Q Consensus 334 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g 410 (502)
+.|+..++||++.+.+++.|.+|...|.++.|.|++ .|++|+.|++.++||++..+.+..|... ..+|++++||..|
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 999999999999999999999999999999998765 4999999999999999999998888732 3579999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 411 SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 411 ~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
++|++|..|.++.+||.-.++.+..+.+|...|.++..+|||. .+.++|-|.+++||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~-------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGM-------AVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCc-------EEEecchhHheeecC
Confidence 9999999999999999999999999999999999999999999 677888889999993
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=301.63 Aligned_cols=269 Identities=23% Similarity=0.384 Sum_probs=229.6
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCC---c---------eeEE--EeeecCc
Q 010754 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP---L---------NVLV--LKHVKGR 269 (502)
Q Consensus 204 ~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~---~---------~~~~--~~~~~~~ 269 (502)
|.-...++..-...++|+.|++++++||.|-.|..|++|.+...+...-..... + .... -......
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 333444555555779999999999999999999999999998543111000000 0 0000 0011223
Q ss_pred cccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc
Q 010754 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (502)
Q Consensus 270 ~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~ 348 (502)
..+|.++|....|+|+.++|++++.|++||+|++.. .....+.+|..||+.+.|+|.|-||+|++.|++.++|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 568899999999999999999999999999999875 5667888999999999999999999999999999999999999
Q ss_pred eEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 349 WKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 349 ~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
+++.|.+|.+.|.++.|+|+. .+++|+.|.++++||+.++..++.|.||.++|++++|||+|++|++|+.||.|+|||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 999999999999999998875 5889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeE
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIY 479 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~ 479 (502)
.+++++..+.+|++.|++|.||.+|. .|+.+++|.++++|+....
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~-------vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGN-------VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCC-------EEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999998 7788888899999975443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=260.09 Aligned_cols=246 Identities=23% Similarity=0.396 Sum_probs=217.1
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
..++.|+||...|..++.+++|++.++++.|+++++||+.+++. ...+.+|...|.+++|++|
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~-----------------t~~f~GH~~dVlsva~s~d 116 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGES-----------------TRRFVGHTKDVLSVAFSTD 116 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcE-----------------EEEEEecCCceEEEEecCC
Confidence 35788999999999999999999999999999999999998752 2234567889999999999
Q ss_pred CCEEEEEECCCeEEEEECCCceEEEecCc--cCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 286 GTLLATGSYDGQARIWSTNGDLKCTLSKH--KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
.+.+++|+.|.+|++|++-+.+..+...+ +.-|.|++|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++
T Consensus 117 n~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 117 NRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred CceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 99999999999999999999888877665 788999999998 68999999999999999999999999999999999
Q ss_pred EEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc--
Q 010754 362 DVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-- 438 (502)
Q Consensus 362 ~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~-- 438 (502)
.+.++|++. .++|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+.+... .|+|||+.++.++..++.
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccc
Confidence 999998776 5678899999999999999988886 88999999999998777776655 599999999998877652
Q ss_pred --C-----CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 439 --H-----SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 439 --h-----~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
. .-...+++|++||+ .|+.+-.|+.+++|...
T Consensus 275 ~g~s~~~~~~~clslaws~dG~-------tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 275 IGPSSKAGDPICLSLAWSADGQ-------TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccCCcEEEEEEEcCCCc-------EEEeeecCCcEEEEEee
Confidence 2 22368899999999 88899999999999653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=284.73 Aligned_cols=256 Identities=25% Similarity=0.449 Sum_probs=225.1
Q ss_pred CceeeeCCCceEEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCC
Q 010754 198 SESFEIPNSDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 276 (502)
Q Consensus 198 ~~~~~~~~~~~~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (502)
...+.+|.+.++++.||+..|.++.|.| .+.+|++|+.|+.|+||++.+.. .+...+.+|..+
T Consensus 197 ~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~ 260 (503)
T KOG0282|consen 197 EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKP 260 (503)
T ss_pred cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhh
Confidence 4567789999999999999999999999 79999999999999999987632 244556678899
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEee
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 355 (502)
|.+++|+.+|..++++++|+.|++||++.+.+.........++|++|+|++ +.|++|+.|+.|+.||+++++.++.+..
T Consensus 261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh
Confidence 999999999999999999999999999876665555566788999999998 8999999999999999999999999999
Q ss_pred ccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcce-------------------------------------------
Q 010754 356 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPI------------------------------------------- 391 (502)
Q Consensus 356 ~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~------------------------------------------- 391 (502)
|-+.|.++.|.++ .+|++.+.|+.++||+.+...++
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 9999999999665 56999999999999998865433
Q ss_pred ---EEEecCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe
Q 010754 392 ---KTFAGHQ--GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR 466 (502)
Q Consensus 392 ---~~~~~h~--~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las 466 (502)
+.|.||. +.-..+.|||||.+|++|+.||.+.+||.++-+.+..+++|+++|..+.|+|..+ ..+++++
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~------Skvat~~ 494 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP------SKVATCG 494 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc------ceeEecc
Confidence 2234553 4566799999999999999999999999999999999999999999999999876 4678888
Q ss_pred ecCceEEEE
Q 010754 467 LIPYFLYWI 475 (502)
Q Consensus 467 ~~~~~~iw~ 475 (502)
.+|.|++|.
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=257.08 Aligned_cols=247 Identities=24% Similarity=0.339 Sum_probs=214.8
Q ss_pred eEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.-+|++|++.|+.++..+. ...|++++.|.++.+|++..... ........+.+|+..|..+..+++|
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~------------~~G~~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI------------KYGVPVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc------------ccCceeeeeeccceEecceEEccCC
Confidence 3578999999999999996 67999999999999999987532 1112334456688999999999999
Q ss_pred CEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec--cCCeEEE
Q 010754 287 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGPTLDV 363 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~v 363 (502)
++.++++.|+.+++||+.+ ...+.+.+|...|.+++|+++.+.+++|+.|++|++|++... +..++... ...|.++
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscv 154 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCV 154 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEE
Confidence 9999999999999999875 778899999999999999999999999999999999998654 44444433 6789999
Q ss_pred EecCCC---EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC
Q 010754 364 DWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 364 ~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~ 440 (502)
.|+|+. .+++++.|++|++||+++-+....+.||.+.++.+++||||.+.++|+.||.+.+||++.++.+..+. |.
T Consensus 155 rfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~ 233 (315)
T KOG0279|consen 155 RFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AF 233 (315)
T ss_pred EEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CC
Confidence 998874 58999999999999999999999999999999999999999999999999999999999999988775 88
Q ss_pred CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 441 KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 441 ~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..|.+++|+|+.. .+.+.....++||+.
T Consensus 234 ~~v~sl~fspnry--------wL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 234 DIVNSLCFSPNRY--------WLCAATATSIKIWDL 261 (315)
T ss_pred CeEeeEEecCCce--------eEeeccCCceEEEec
Confidence 8999999999975 455555566999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=263.96 Aligned_cols=235 Identities=27% Similarity=0.485 Sum_probs=208.0
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|++++|+.+|.+||+|+.||.++||+..... ...+..|.++|.++.|+..|++|++++.|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l------------------~~tl~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL------------------ISTLGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchh------------------hhhhhccCCceEEEEEcCCCCEEEeccCC
Confidence 679999999999999999999999999976542 23345578899999999999999999999
Q ss_pred CeEEEEECCCc------------------------------------------eEEEecCccCCeEEEEEecCCCEEEEE
Q 010754 296 GQARIWSTNGD------------------------------------------LKCTLSKHKGPIFSLKWNKKGDYLLTG 333 (502)
Q Consensus 296 g~i~iwd~~~~------------------------------------------~~~~~~~~~~~v~~l~~~~~~~~l~s~ 333 (502)
|++.+||.... .+.++.+|.++|.+|+|+|.|..|+++
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 99999985211 233556799999999999999999999
Q ss_pred ecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC----------CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEE
Q 010754 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN----------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNC 403 (502)
Q Consensus 334 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~----------~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~ 403 (502)
+.|++++||.+........+..|...|..+.|+|. ..+++++.|++|++||+..+.++.+|..|..+|.+
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 99999999999999999999999999999999873 34899999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++|+|+|+++|+|+.||.|.||++++++.++.+.+ ++.|..++|+-+|. ++..+-+++.+++-++
T Consensus 458 vafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~-------kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGD-------KLGACASDGSVCVLDL 522 (524)
T ss_pred EEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCC-------EEEEEecCCCceEEEe
Confidence 99999999999999999999999999999999885 44599999999998 6666666777776543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=270.41 Aligned_cols=250 Identities=23% Similarity=0.417 Sum_probs=224.3
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
+.+|..+.|.|+|+.|++|+..|...+|+...- .+......|...|+++.|+++|.++++|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 467999999999999999999999999997432 133445678899999999999999999999
Q ss_pred CCeEEEEECCCceEEEecCcc-CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEE
Q 010754 295 DGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFA 372 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~ 372 (502)
+|.|++|+.+-..+..+..|. ..|.+++|+|+...|++|+.||+|+|||....+....+.+|.-.|.+++|+|. +.++
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 999999998866666666655 89999999999999999999999999999999888889999999999999885 5688
Q ss_pred EEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCC
Q 010754 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (502)
Q Consensus 373 ~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g 452 (502)
+++.|..|++||.+++.++.++.+|...|..+.|+|++++|+++|.|..++++|+++.+.+.++++|...|+++.|+|--
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCccEEEEeecCceEEE------------------EeeeEEEeeeccc
Q 010754 453 SGTNNPNQQLILARLIPYFLYW------------------ICSIYFKYFGTTE 487 (502)
Q Consensus 453 ~~~~~~~~~l~las~~~~~~iw------------------~~~~~~~~~g~~~ 487 (502)
. ..+.+++.|+.+.+| +|++.+.|.|++.
T Consensus 319 ~------~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 319 E------SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred c------cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeE
Confidence 5 356778888999999 4667777777664
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=259.81 Aligned_cols=259 Identities=22% Similarity=0.363 Sum_probs=234.3
Q ss_pred ceeeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE
Q 010754 199 ESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278 (502)
Q Consensus 199 ~~~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (502)
..|..|.+..+++.||.+.|.|+++.|...+|++|+.|++++|||+.++++ .....+|...|.
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L-----------------kltltGhi~~vr 197 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL-----------------KLTLTGHIETVR 197 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE-----------------EEeecchhheee
Confidence 445667777899999999999999999999999999999999999999873 233445677899
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc
Q 010754 279 TLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
.+++|+--.|+++++.|+.|+.||++ .+.+..+.+|-+.|+|++.+|.-..|++|+.|.++++||+++...+..+.+|.
T Consensus 198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred eeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC
Confidence 99999999999999999999999987 56778899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 358 GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 358 ~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
.+|..+.+.+ +..+++|+.|++|++||++.++...++..|...|.+++.+|....+||+|.|. |+-|++..+..+..+
T Consensus 278 ~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 278 NPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL 356 (460)
T ss_pred CcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc
Confidence 9999999965 67899999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEEEee
Q 010754 437 REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYF 483 (502)
Q Consensus 437 ~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~~~~ 483 (502)
.+|+.-|.+++-..||- ++.|+..+.+.+|+|.-.+++.
T Consensus 357 sgh~~iintl~~nsD~v--------~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDGV--------LVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred ccccceeeeeeeccCce--------EEEcCCceEEEEEecCcCcccc
Confidence 99999999999999985 4555555889999987766553
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=285.04 Aligned_cols=208 Identities=25% Similarity=0.465 Sum_probs=192.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..+.|.||.++|+.+.|+|+.++|+++|.|+++|+|.+.+..+. ....+|..+|.++.|+|.|
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~-----------------V~y~GH~~PVwdV~F~P~G 505 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL-----------------VIYKGHLAPVWDVQFAPRG 505 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE-----------------EEecCCCcceeeEEecCCc
Confidence 35679999999999999999999999999999999999886532 2234778899999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
-++|+|+.|++.++|..+ ....+.+.+|-+.|.|+.|+|+.+|+++||.|.+|++||+.+|..++.|.+|.++|.+++|
T Consensus 506 yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~ 585 (707)
T KOG0263|consen 506 YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAF 585 (707)
T ss_pred eEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEE
Confidence 999999999999999976 5677889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 010754 366 RNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 366 ~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~ 431 (502)
+|.++ +++|+.||.|.+||+.++.++..+.+|++.|.++.|+.+|..||+|+.|.+|++||+..-.
T Consensus 586 Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 586 SPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred cCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 98765 7889999999999999999999999999999999999999999999999999999986533
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=255.71 Aligned_cols=248 Identities=22% Similarity=0.383 Sum_probs=227.1
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
...+.|+||++.|..++|+..|++||+++.|-.+++||+.+.. .......+|...|.++.|-|.
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~----------------~c~ks~~gh~h~vS~V~f~P~ 204 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF----------------RCIKSLIGHEHGVSSVFFLPL 204 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH----------------HHHHHhcCcccceeeEEEEec
Confidence 3467899999999999999999999999999999999987631 122233456778999999999
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
|.+|++++.|.+|+.|+.. +-++.++.+|..-|..++.+.||..+++++.|.+|++|-+.++++...+..|.-+|-+++
T Consensus 205 gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~ 284 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIA 284 (406)
T ss_pred CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEE
Confidence 9999999999999999987 578889999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC----------------CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 365 WRNN----------------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 365 ~~~~----------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
|.|. ..+.+++.|++|++||+.++.++.++.+|...|..++|+|.|+||+|+.+|+++++||++
T Consensus 285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9642 257888999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 429 ~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+++|.+.+.+|..-++++.|+.+-. ++++|+.+..+++|-+
T Consensus 365 ~~~cmk~~~ah~hfvt~lDfh~~~p-------~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 NLQCMKTLEAHEHFVTSLDFHKTAP-------YVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeeeccCCCcceeEEEecCCCCc-------eEEeccccceeeeeec
Confidence 9999999999999999999999987 8899999999999965
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=239.96 Aligned_cols=266 Identities=20% Similarity=0.309 Sum_probs=226.4
Q ss_pred cccccCCCCceeeeCC----CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEee
Q 010754 190 MDIATTSASESFEIPN----SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 265 (502)
..+++.+-+..++++. ...++++...+.|..+...|+++.||+++. -.||+||+.++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--------------- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--------------- 74 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC---------------
Confidence 3455666666666643 446777777889999999999999999976 68999999987531
Q ss_pred ecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC
Q 010754 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345 (502)
Q Consensus 266 ~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~ 345 (502)
+...+.+|.+.|+++.|..+|+.+++|+.||+++|||++.........|.++|+++..+|+...|++|..+|.|++||+.
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 22334566788999999999999999999999999999987777777899999999999999999999999999999999
Q ss_pred CCceEEEEee-ccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCC------cceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 346 TEEWKQQFEF-HSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGEN------RPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 346 ~~~~~~~~~~-~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~------~~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
...+...+.. ...++.++...+++. ++.+...|..++|++-.. .|+.+|+.|.+.|..+.+||++++||++|
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 8876665543 345688888866554 667778899999998764 46788999999999999999999999999
Q ss_pred CCCcEEEEECCCC-eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 418 DDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 418 ~dg~i~iwd~~~~-~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
.|.+++||+..+. +....+.+|...++..+||.||. +|++|+.|+..++|....
T Consensus 235 sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~-------YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGE-------YLVTASSDHTARLWDLSA 289 (311)
T ss_pred CCceEEEEecCCceeeEEEeecCCceEEeeeeccCcc-------EEEecCCCCceeeccccc
Confidence 9999999999988 67778889999999999999999 999999999999998654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=263.69 Aligned_cols=268 Identities=24% Similarity=0.394 Sum_probs=231.5
Q ss_pred ccCCCCcccccCCCCceeeeCCCce----EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCce
Q 010754 184 EKGPEPMDIATTSASESFEIPNSDV----TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLN 259 (502)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~ 259 (502)
...|+...+.+++..+.+.+++... .+++.|..+|.++.|+++|.+++||..+|.|++|+..-..
T Consensus 103 ~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----------- 171 (464)
T KOG0284|consen 103 RWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----------- 171 (464)
T ss_pred EEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-----------
Confidence 3455656677778888888887654 3567999999999999999999999999999999965321
Q ss_pred eEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCe
Q 010754 260 VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338 (502)
Q Consensus 260 ~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~ 338 (502)
.......|...|++++|+|+...+++|+.||+|+|||.. .+....+.+|.-.|.++.|+|....|++++.|..
T Consensus 172 ------Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnl 245 (464)
T KOG0284|consen 172 ------VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNL 245 (464)
T ss_pred ------hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCce
Confidence 111222345789999999999999999999999999965 5566677999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC-CCEEEEE
Q 010754 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASC 416 (502)
Q Consensus 339 i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~-g~~las~ 416 (502)
|++||.+++.++.++..|+..|+.+.|.++ +.|++++.|..++++|+++.+.+.++++|...|+++.|+|- ..+|.+|
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 999999999999999999999999999764 66899999999999999999999999999999999999994 5688999
Q ss_pred eCCCcEEEEECCCCeeEEEec-cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 417 SDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 417 s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+.||.|..|.+...+++..+. +|...|++++|+|-|- .|.+|+.|.++++|.
T Consensus 326 g~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh-------il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH-------ILATGSNDRTVRFWT 378 (464)
T ss_pred cCCCceEEEeccccccccCCCcccccceeeeeccccce-------eEeecCCCcceeeec
Confidence 999999999998777766665 8999999999999998 555566678899995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=250.75 Aligned_cols=248 Identities=25% Similarity=0.371 Sum_probs=226.0
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.....+.||..+|+.+-|+|+-.++++++.|++|++||..++++. ....+|...|.+++|+..
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-----------------~~LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-----------------RSLRGHTDSVFDISFDAS 161 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-----------------hhhhccccceeEEEEecC
Confidence 456778899999999999999999999999999999999998743 334556778999999999
Q ss_pred CCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 286 GTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
|+++++++.|-.+++||... .++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.+|.+|...|..+
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 99999999999999999875 5667788999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC---------------CCEEEEEeCCCcEEEEEC
Q 010754 364 DWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT---------------GSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 364 ~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~---------------g~~las~s~dg~i~iwd~ 427 (502)
....++. +++++.|.++++|-+.++++...++.|+.+|-+++|.|. +.++.+++.|++|++||+
T Consensus 242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 9866554 788899999999999999999999999999999999872 369999999999999999
Q ss_pred CCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.++.|+.++.+|...|..++|+|-|. +|+.+..|+++++|+..
T Consensus 322 ~tg~cL~tL~ghdnwVr~~af~p~Gk-------yi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 322 STGMCLFTLVGHDNWVRGVAFSPGGK-------YILSCADDKTLRVWDLK 364 (406)
T ss_pred cCCeEEEEEecccceeeeeEEcCCCe-------EEEEEecCCcEEEEEec
Confidence 99999999999999999999999998 88888888999999753
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=232.26 Aligned_cols=243 Identities=30% Similarity=0.536 Sum_probs=205.2
Q ss_pred ceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.++.++||++.|..++|+|- |.+||||+.|..|+||+...+.. ...++.. ..+|...|.+++|+|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vl--d~~hkrsVRsvAwsp~ 72 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS-----------WTCKTVL--DDGHKRSVRSVAWSPH 72 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc-----------EEEEEec--cccchheeeeeeecCC
Confidence 46789999999999999997 89999999999999999875321 1222222 2367889999999999
Q ss_pred CCEEEEEECCCeEEEEECCC---ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC---ceEEEEeeccCC
Q 010754 286 GTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE---EWKQQFEFHSGP 359 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~ 359 (502)
|++|++|++|.++.||.-.. .++.++.+|...|.+++|+++|++|++|+.|++|-||.+..+ .+...+..|...
T Consensus 73 g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 73 GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc
Confidence 99999999999999997542 567789999999999999999999999999999999998643 467788899999
Q ss_pred eEEEEecC-CCEEEEEeCCCeEEEEEcCC---CcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 360 TLDVDWRN-NVSFATSSTDNMIYVCKIGE---NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 360 v~~v~~~~-~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
|-.+.|+| ...|++++-|++|++|+-.. -.++.++.+|...|.+++|+|.|..|++|++|++|+||...+ .
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~ 227 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----D 227 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----C
Confidence 99999988 46789999999999998763 357899999999999999999999999999999999998652 2
Q ss_pred ec-cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 436 LR-EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 436 ~~-~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+. .|+.+++.++|. +|. |.++++|+.++++.-
T Consensus 228 ~~~~~sr~~Y~v~W~-~~~--------IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 228 LSGMHSRALYDVPWD-NGV--------IASGGGDDAIRLFKE 260 (312)
T ss_pred cchhcccceEeeeec-ccc--------eEeccCCCEEEEEEe
Confidence 22 488899999999 663 566666677777643
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=268.10 Aligned_cols=256 Identities=24% Similarity=0.373 Sum_probs=225.7
Q ss_pred eeeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEE
Q 010754 200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 279 (502)
Q Consensus 200 ~~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (502)
.+..+......+.||+..|.++....+|-+|+|||.|.++++|.++++... ..+.....+|...|.+
T Consensus 350 ~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~-------------~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 350 LYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK-------------SLCVAQANGHTNSVGA 416 (775)
T ss_pred EEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch-------------hhhhhhhcccccccce
Confidence 344566667799999999999996667889999999999999999554321 1233455678899999
Q ss_pred EEECCCC-CEEEEEECCCeEEEEECCCc------eE----EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc
Q 010754 280 LDWNGEG-TLLATGSYDGQARIWSTNGD------LK----CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (502)
Q Consensus 280 l~~s~~g-~~l~s~~~dg~i~iwd~~~~------~~----~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~ 348 (502)
++++..+ .+|++++.|+++++|++... .. .....|...|++++++|+.+.|+|||.|++.+||++....
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~ 496 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR 496 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce
Confidence 9998754 58999999999999997641 11 1334699999999999999999999999999999999999
Q ss_pred eEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 349 WKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 349 ~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
...++.+|...+.++.|++. ..+++++.|++|+||.+.+..++++|.||...|..+.|-.+|+.|+||+.||-|+||++
T Consensus 497 l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 497 LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 99999999999999999876 55889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+++.|+.++.+|+..|++++-+|.+. .+++|++|+.+.+|-
T Consensus 577 kt~eC~~tlD~H~DrvWaL~~~~~~~-------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 577 KTNECEMTLDAHNDRVWALSVSPLLD-------MFVTGGGDGRIIFWK 617 (775)
T ss_pred cchhhhhhhhhccceeEEEeecCccc-------eeEecCCCeEEEEee
Confidence 99999999999999999999999987 788899999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=238.42 Aligned_cols=261 Identities=24% Similarity=0.404 Sum_probs=220.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
++..+.||++.|+.+.|+|+|.+||||+.|..|.+|++..... -.....+|+++|..+.|.+|+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------N~~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------NFWVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------ceeeeccccceeEeeeeccCC
Confidence 4567889999999999999999999999999999999765321 111223788999999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
+.|++++.|.+|+.||.+ ++....+..|..-|.++.-+..|. .+.+++.|+++++||+++...++++. ..-+++++.
T Consensus 103 s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~ 181 (338)
T KOG0265|consen 103 SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVG 181 (338)
T ss_pred CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEE
Confidence 999999999999999976 677888999999999998666665 45578889999999999988887764 345789999
Q ss_pred ecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeeEEEeccC
Q 010754 365 WRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----DKYVHDLREH 439 (502)
Q Consensus 365 ~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~----~~~~~~~~~h 439 (502)
|.. ...+++|+-|+.|++||++.+..+.++.||.++|+.+..+|+|.++.+-+.|.++++||++. ..++..+.+|
T Consensus 182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 955 56699999999999999999999999999999999999999999999999999999999874 4567777765
Q ss_pred C----CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe---eeEEEeeecccccCc
Q 010754 440 S----KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC---SIYFKYFGTTERANL 491 (502)
Q Consensus 440 ~----~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~---~~~~~~~g~~~~~~~ 491 (502)
. ......+|+|++. .+-.+++|..+.+|+. .+.|...|.+...+.
T Consensus 262 ~hnfeknlL~cswsp~~~-------~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGT-------KITAGSADRFVYVWDTTSRRILYKLPGHYGSVNE 313 (338)
T ss_pred hhhhhhhcceeeccCCCC-------ccccccccceEEEeecccccEEEEcCCcceeEEE
Confidence 4 3467789999998 6778899999999974 446667777765544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=237.69 Aligned_cols=246 Identities=22% Similarity=0.387 Sum_probs=216.6
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
...+.+|..|+++|++++.+|+.++++||+.|....+|++.++.. .....+|...|+++.|+.
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~-----------------~~eltgHKDSVt~~~Fsh 116 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEF-----------------AGELTGHKDSVTCCSFSH 116 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcc-----------------eeEecCCCCceEEEEEcc
Confidence 345788999999999999999999999999999999999998763 233456788999999999
Q ss_pred CCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 285 EGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
+|.+||+|+.+|.|+||.... .....+...-..|.=|+|+|.+..|++|+.||.+.+|.+.++...+.+.+|..++++=
T Consensus 117 dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 117 DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 999999999999999999764 4555665566778889999999999999999999999999988899999999999999
Q ss_pred EecCC-CEEEEEeCCCeEEEEEcCCCcceEEEe-----------------------------------------------
Q 010754 364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA----------------------------------------------- 395 (502)
Q Consensus 364 ~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~----------------------------------------------- 395 (502)
.|.|+ .+++++..||+|++|+..+++++.++.
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~ 276 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP 276 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc
Confidence 99665 458899999999999999887663332
Q ss_pred ------------------------------------------------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 396 ------------------------------------------------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 396 ------------------------------------------------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
.|...|+.+.|-+ ..+|++++.+|.|+.||.
T Consensus 277 ~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 277 ELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDA 355 (399)
T ss_pred cccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeec
Confidence 4677899999998 789999999999999999
Q ss_pred CCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
++|+++..+.+|..+|.+++.+|+++ .++++|.|+..+++.
T Consensus 356 RtG~l~~~y~GH~~~Il~f~ls~~~~-------~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 356 RTGQLKFTYTGHQMGILDFALSPQKR-------LVVTVSDDNTALVFE 396 (399)
T ss_pred cccceEEEEecCchheeEEEEcCCCc-------EEEEecCCCeEEEEe
Confidence 99999999999999999999999998 788888888888874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=256.25 Aligned_cols=254 Identities=23% Similarity=0.421 Sum_probs=214.1
Q ss_pred eeeeCCC-ceEEeccCCCceEEEEEcCCCCeEEEEeCC-CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCe
Q 010754 200 SFEIPNS-DVTILEGHTSEVCACAWSPAGSLLASGSGD-STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277 (502)
Q Consensus 200 ~~~~~~~-~~~~l~~H~~~V~~~~~~p~~~~l~sgs~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (502)
.+++|.. .++.|.--..+|..++|+..|.+||.|+.. |.+-||+++.... ....++|...+
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-----------------VlKQQgH~~~i 353 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-----------------VLKQQGHSDRI 353 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-----------------eeeccccccce
Confidence 4456653 456676677889999999999999999864 7999999987542 22335677889
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec
Q 010754 278 TTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 356 (502)
++++++|||+++|+|+.||.|+|||.. +-+..++..|++.|+.++|+..|+.+++++.||+|+.||+...+..++|...
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence 999999999999999999999999966 6788899999999999999999999999999999999999999988888754
Q ss_pred c-CCeEEEEecCCCEEEEEe-CCC-eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-e
Q 010754 357 S-GPTLDVDWRNNVSFATSS-TDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-Y 432 (502)
Q Consensus 357 ~-~~v~~v~~~~~~~~~~~~-~d~-~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~-~ 432 (502)
. .+..+++-.+.+.+++++ .|. .|++|++.+|+.+..+.||+++|.+++|+|+|..|||+|.|.+||+||+-... .
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT 513 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce
Confidence 3 245666666666655544 444 48999999999999999999999999999999999999999999999986543 3
Q ss_pred EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
+.++. +.+.+..++|+|+|. .+.+++.|+.+.+|+...
T Consensus 514 vEtl~-i~sdvl~vsfrPdG~-------elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 514 VETLE-IRSDVLAVSFRPDGK-------ELAVATLDGQITFFDIKE 551 (893)
T ss_pred eeeEe-eccceeEEEEcCCCC-------eEEEEEecceEEEEEhhh
Confidence 34444 677899999999998 899999999999997544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=262.55 Aligned_cols=248 Identities=27% Similarity=0.432 Sum_probs=215.8
Q ss_pred eEEeccC-CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGH-TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H-~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
...+.+| ...|.|+.|+|+|+.|++++.|+.+++|+..+... .......+|...|.+++|+|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECCCC
Confidence 4555554 89999999999999999999999999999965441 0112225678889999999999
Q ss_pred CEEEEEECCCeEEEEEC-CC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWST-NG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~-~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
+++++|+.|++|+|||+ .. ..+.++.+|...|++++|+|+++.+++|+.|++|++||+++++++..+.+|.++|..++
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 99999999999999998 43 67789999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-EEEEEeCCCeEEEEEcCCCc--ceEEEecCCCc--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC
Q 010754 365 WRNNV-SFATSSTDNMIYVCKIGENR--PIKTFAGHQGE--VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 365 ~~~~~-~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~--i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h 439 (502)
|++++ .+++++.|+.|++||+.++. ++..+.++... ++++.|+|++.+|++++.|+.+++||+..+.++..+.+|
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 97755 57788889999999999998 67788877665 999999999999999999999999999999999999988
Q ss_pred CCcE---EEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 440 SKEI---YTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 440 ~~~i---~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
...+ .+...++.|. .+++++.|+.+.+|+..
T Consensus 376 ~~~~~~~~~~~~~~~~~-------~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGK-------LIYSGSEDGSVYVWDSS 409 (456)
T ss_pred CCcceeEecccccCCCC-------eEEEEeCCceEEEEeCC
Confidence 8753 3344455555 88999999999999865
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=245.00 Aligned_cols=258 Identities=24% Similarity=0.361 Sum_probs=207.5
Q ss_pred ceeeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE
Q 010754 199 ESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278 (502)
Q Consensus 199 ~~~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (502)
...++|.+..++|..|++.|+-+.||++|++|||++.|.++.||.+...... .+.....+|..+|.
T Consensus 208 ~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~--------------kl~~tlvgh~~~V~ 273 (519)
T KOG0293|consen 208 GRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF--------------KLKKTLVGHSQPVS 273 (519)
T ss_pred CcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce--------------eeeeeeecccCceE
Confidence 3446788889999999999999999999999999999999999998764321 13344556788999
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCceEEEecC--ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc--------
Q 010754 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-------- 348 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~-------- 348 (502)
.+.||||.++|++|+.+..+.+||+.......... +...+.+++|.|||..+++|+.|+++..||+....
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr 353 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR 353 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc
Confidence 99999999999999999999999988655544433 34789999999999999999999999999875321
Q ss_pred --------------eEEEEe-------------------eccCCeEEEEecCCCEEE-EEeCCCeEEEEEcCCCcceEEE
Q 010754 349 --------------WKQQFE-------------------FHSGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTF 394 (502)
Q Consensus 349 --------------~~~~~~-------------------~~~~~v~~v~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~ 394 (502)
.+.... ....++++++.+.++.++ +.-.+..|++||+...+.+..+
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence 110000 012356777777666644 5557888999999998899999
Q ss_pred ecCCCc--EEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCce
Q 010754 395 AGHQGE--VNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYF 471 (502)
Q Consensus 395 ~~h~~~--i~~l~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~ 471 (502)
.||... |..-+|-- +..++||||+|+.|+||+..+++++..+.||...|++|+|+|... .++..|+.|+++
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p------~m~ASasDDgtI 507 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADP------EMFASASDDGTI 507 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCH------HHhhccCCCCeE
Confidence 999653 44445544 457999999999999999999999999999999999999999877 466777778999
Q ss_pred EEEEe
Q 010754 472 LYWIC 476 (502)
Q Consensus 472 ~iw~~ 476 (502)
+||-.
T Consensus 508 RIWg~ 512 (519)
T KOG0293|consen 508 RIWGP 512 (519)
T ss_pred EEecC
Confidence 99964
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=263.33 Aligned_cols=246 Identities=26% Similarity=0.438 Sum_probs=211.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..+.+.+|...|.+++|+|+++++++|+.|++|+|||+..... ......+|...|++++|+|+|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~----------------~~~~l~gH~~~v~~~~f~p~g 258 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR----------------NLKTLKGHSTYVTSVAFSPDG 258 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe----------------EEEEecCCCCceEEEEecCCC
Confidence 5667789999999999999999999999999999999943311 122334678899999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc--eEEEEeeccCC--eE
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSGP--TL 361 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~--v~ 361 (502)
+++++|+.|++|+|||++ +.+...+.+|...|.+++|++++++|++++.|+.|++||+.++. +...+..+... +.
T Consensus 259 ~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 259 NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT 338 (456)
T ss_pred CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence 999999999999999988 58888999999999999999999999999999999999999999 56666665555 89
Q ss_pred EEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCc---EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 362 DVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGE---VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 362 ~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~---i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
.+.|+++.. +++++.|+.+++||+..+..+..+.+|... +.+...++.+.++++|+.|+.|++||+.++..+..+.
T Consensus 339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred EEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc
Confidence 999977655 778888889999999999999999999875 4445567899999999999999999999999999999
Q ss_pred cC-CCcEEEEEEccCCCCCCCCCccEEEEee--cCceEEEE
Q 010754 438 EH-SKEIYTIRWSPTGSGTNNPNQQLILARL--IPYFLYWI 475 (502)
Q Consensus 438 ~h-~~~i~~v~~sp~g~~~~~~~~~l~las~--~~~~~iw~ 475 (502)
+| ...+..++|+|... .+..++. |+.+++|.
T Consensus 419 ~h~~~~~~~~~~~~~~~-------~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 419 GHSKAAVSDLSSHPTEN-------LIASSSFEGDGLIRLWK 452 (456)
T ss_pred CCCCCceeccccCCCcC-------eeeecCcCCCceEEEec
Confidence 99 88999999999988 4455553 34455554
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=243.67 Aligned_cols=245 Identities=31% Similarity=0.502 Sum_probs=213.0
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
+.+++|.++|.+++|+|++++|++++.||.+++|++.++... .....|...+..+.|++++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~~~~~~~ 65 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAASADGTY 65 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEECCCCCE
Confidence 567899999999999999999999999999999999875421 111234567889999999999
Q ss_pred EEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC
Q 010754 289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~ 367 (502)
+++++.+|.|++|+... .....+..|...|.++.|++++.++++++.|+.|.+||+++++....+..|...+.++.|.+
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 99999999999999875 56677788888999999999988888888899999999999998888888889999999998
Q ss_pred CCEEEEEe-CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEE
Q 010754 368 NVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (502)
Q Consensus 368 ~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v 446 (502)
++.+++++ .++.|++||+++++.+..+..|...|.++.|+|+++.|++++.||.|++||+++++.+..+..|..+|.++
T Consensus 146 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 225 (289)
T cd00200 146 DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225 (289)
T ss_pred cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE
Confidence 65555554 49999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred EEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 447 RWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 447 ~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+|+|++. .++.++.++.+.+|...
T Consensus 226 ~~~~~~~-------~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 226 AFSPDGY-------LLASGSEDGTIRVWDLR 249 (289)
T ss_pred EEcCCCc-------EEEEEcCCCcEEEEEcC
Confidence 9999965 33444448899999754
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=251.48 Aligned_cols=243 Identities=24% Similarity=0.369 Sum_probs=219.6
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
+.+..|+..|.++.|+|...+++++-.+|.|.||+.++......+. ...-+|.+..|-+..+.
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe-----------------V~~~PvRa~kfiaRknW 69 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE-----------------VSEVPVRAAKFIARKNW 69 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee-----------------ecccchhhheeeeccce
Confidence 4556689999999999999999999999999999999876443221 12346888888888899
Q ss_pred EEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC-CceEEEEeeccCCeEEEEec
Q 010754 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~v~~~ 366 (502)
+++|+.|..|+||+.+ ...+..+..|..-|.+++.+|...+++++|.|-+|++||... ..+.++|.+|..-|+.++|.
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred EEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 9999999999999987 467889999999999999999999999999999999999865 46788999999999999997
Q ss_pred CC--CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeeEEEeccCCCc
Q 010754 367 NN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG--SLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (502)
Q Consensus 367 ~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g--~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~ 442 (502)
|. +.|++++-|++|++|.+.+..+..++.+|...|+|+.|-+-| .+|+||++|.+|+|||..+..|++++.+|...
T Consensus 150 PkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N 229 (794)
T KOG0276|consen 150 PKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN 229 (794)
T ss_pred CCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc
Confidence 74 569999999999999999999999999999999999998855 69999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 443 IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 443 i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
|..+.|+|.-+ .++++|.|+++++|.
T Consensus 230 vs~v~fhp~lp-------iiisgsEDGTvriWh 255 (794)
T KOG0276|consen 230 VSFVFFHPELP-------IIISGSEDGTVRIWN 255 (794)
T ss_pred ceEEEecCCCc-------EEEEecCCccEEEec
Confidence 99999999988 788999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=241.56 Aligned_cols=251 Identities=23% Similarity=0.428 Sum_probs=213.9
Q ss_pred cccCCCCceeeeCCC----ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeec
Q 010754 192 IATTSASESFEIPNS----DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267 (502)
Q Consensus 192 ~~~~~~~~~~~~~~~----~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (502)
+..+..+.++.++.. ..++|.||+++|.|+.|. .+.+++||.|.+|+|||+++++.+.
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~---------------- 271 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN---------------- 271 (499)
T ss_pred hhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh----------------
Confidence 444555666666543 367889999999999995 5699999999999999999987543
Q ss_pred CccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc----eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 268 ~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
....|...|..+.|+. .++++++.|.+|.+||+... +...+.+|...|..+.|+ .+++++++.|++|++|+
T Consensus 272 -tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 -TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred -HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 2345677899999975 49999999999999997643 445678999999999996 46999999999999999
Q ss_pred cCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~ 423 (502)
+.++.+++++.+|...|.++.+. +..+++|+.|.+|++||+..|.+++.+.||+.-|.|+.|+ .+.+++|..||+|+
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkik 423 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIK 423 (499)
T ss_pred ccceeeehhhhcccccceehhcc-CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEE
Confidence 99999999999999999888875 4568899999999999999999999999999999999996 67899999999999
Q ss_pred EEECCCCe---------eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 424 IWNMKQDK---------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 424 iwd~~~~~---------~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|||+.++. |+..+..|++.|..+.|..- +++..|-|.++.+|++.
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f---------qIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF---------QIISSSHDDTILIWDFL 477 (499)
T ss_pred EEecccccCCcccccchHHHhhhhccceeEEEeecce---------EEEeccCCCeEEEEEcC
Confidence 99997653 45666689999999999875 56888889999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-31 Score=220.16 Aligned_cols=250 Identities=17% Similarity=0.310 Sum_probs=216.0
Q ss_pred eeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE
Q 010754 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (502)
Q Consensus 202 ~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 281 (502)
++|....++|..|.++|.++.|+-+|++.++++.|.+|++|+...+.++ ....+|...|..++
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li-----------------ktYsghG~EVlD~~ 66 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI-----------------KTYSGHGHEVLDAA 66 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee-----------------eeecCCCceeeecc
Confidence 4677788999999999999999999999999999999999998877643 33455677899999
Q ss_pred ECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC--ceEEEEeeccC
Q 010754 282 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--EWKQQFEFHSG 358 (502)
Q Consensus 282 ~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~ 358 (502)
.+.|...+++|+.|..|.+||++ ++....+.+|.+.|..++|+.+...+++|+.|.++++||-++. ++++.+.....
T Consensus 67 ~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D 146 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD 146 (307)
T ss_pred ccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC
Confidence 99999999999999999999987 6778899999999999999999999999999999999998764 57788887888
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
.|.+|... +..+++|+.||+++.||++.++...-+-+ .+|++++|+++++.++.++.|++|++-|-.+|+++..+++
T Consensus 147 ~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 147 GVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred ceeEEEec-ccEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 88888864 45689999999999999999987666654 4799999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|...=+.+..+-..+ +..++.+|.|+.+.+|+.
T Consensus 224 hkn~eykldc~l~qs-----dthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQS-----DTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cccceeeeeeeeccc-----ceeEEeccCCceEEEEEe
Confidence 987665554443332 235677888888888864
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-30 Score=236.38 Aligned_cols=269 Identities=19% Similarity=0.327 Sum_probs=206.4
Q ss_pred CCCcccccCCCCceeee---CC-CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 187 PEPMDIATTSASESFEI---PN-SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~---~~-~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
..|..+.+.+.+..+.+ |+ +.-..++.|..-|+|+.|+|||.++||++.||++.+||=.+++....+
T Consensus 158 sRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l--------- 228 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGEL--------- 228 (603)
T ss_pred CCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEe---------
Confidence 34667777777765543 22 334567889999999999999999999999999999998887643321
Q ss_pred EeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc------------------------------------
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------------------------------ 306 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~------------------------------------ 306 (502)
....+|.+.|.+++|+||++.+++++.|.+++|||+...
T Consensus 229 -----~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in 303 (603)
T KOG0318|consen 229 -----EDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTIN 303 (603)
T ss_pred -----cCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEE
Confidence 114578899999999999999999999999999996421
Q ss_pred --------eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE-----------EEeecc-CC-------
Q 010754 307 --------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-----------QFEFHS-GP------- 359 (502)
Q Consensus 307 --------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-----------~~~~~~-~~------- 359 (502)
....+.+|...|+++..+|++++|++|+.||.|.-||..++..-+ .+..+. +.
T Consensus 304 ~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 304 YLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred EecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 112344699999999999999999999999999999987653211 111110 00
Q ss_pred --------------------------------------------------------------eEEEEecCC-CEEEEEeC
Q 010754 360 --------------------------------------------------------------TLDVDWRNN-VSFATSST 376 (502)
Q Consensus 360 --------------------------------------------------------------v~~v~~~~~-~~~~~~~~ 376 (502)
..+++.+++ ..+++|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 012223233 34788899
Q ss_pred CCeEEEEEcCCCc--ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-EeccCCCcEEEEEEccCCC
Q 010754 377 DNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 377 d~~i~i~d~~~~~--~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~v~~sp~g~ 453 (502)
|+.|++|.+.... .......|.++|++++||||+.|||+|...+.+.+||+.+.+... .+.-|+..|.+++|+|+..
T Consensus 464 Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 464 DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred cceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce
Confidence 9999999987754 333556799999999999999999999999999999998877633 2335999999999999987
Q ss_pred CCCCCCccEEEEeecCceEEEEe
Q 010754 454 GTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 454 ~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+.+||.|..+.||..
T Consensus 544 -------~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 544 -------LVATGSLDTNVIIYSV 559 (603)
T ss_pred -------EEEeccccceEEEEEc
Confidence 6666777777888853
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-30 Score=217.50 Aligned_cols=227 Identities=24% Similarity=0.395 Sum_probs=196.9
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
+.++.++.+|++.|+++.|..+|++++|||.||++||||+....+. ....+..+|+++..+|
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q------------------R~~~~~spVn~vvlhp 134 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ------------------RNYQHNSPVNTVVLHP 134 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc------------------hhccCCCCcceEEecC
Confidence 3478999999999999999999999999999999999999874321 1223457899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCc-eEEE-ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc------eEEEEeec
Q 010754 285 EGTLLATGSYDGQARIWSTNGD-LKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE------WKQQFEFH 356 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~-~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~~~~~ 356 (502)
+...|++|..+|.|++||+... .... ......+|.++...|+|.+++.+...|+.++|++-+.+ ++..+..|
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 9999999999999999998754 3222 33445789999999999999999999999999986543 55677889
Q ss_pred cCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 357 SGPTLDVDWRNNVS-FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 357 ~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
.+-+..+.++|+.. +++++.|.+++||+.... +.-..+.+|...+..++||.+|.||++|+.|+.+++|++..++.++
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 99999999988765 889999999999999887 5667789999999999999999999999999999999999999999
Q ss_pred EeccCCCcEEEEEEc
Q 010754 435 DLREHSKEIYTIRWS 449 (502)
Q Consensus 435 ~~~~h~~~i~~v~~s 449 (502)
...+|..+..+++..
T Consensus 295 qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 295 QYQGHHKAAVCVALN 309 (311)
T ss_pred ecCCcccccEEEEee
Confidence 999999888777654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=237.96 Aligned_cols=245 Identities=28% Similarity=0.505 Sum_probs=218.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|...+.++.|+|++++|++++.||.|++|++.+++... ....+...|.++.|++++
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~-----------------~~~~~~~~i~~~~~~~~~ 105 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR-----------------TLTGHTSYVSSVAFSPDG 105 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE-----------------EEeccCCcEEEEEEcCCC
Confidence 456788999999999999999999999999999999998753211 112345679999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
+++++++.+|.|++|++. +.....+..|...|.+++|+|++.++++++.|+.|++||+++++.+..+..+...+.++.|
T Consensus 106 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 185 (289)
T cd00200 106 RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185 (289)
T ss_pred CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEE
Confidence 999988889999999987 5667777789999999999999888888888999999999999989889888889999999
Q ss_pred cCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE
Q 010754 366 RNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (502)
Q Consensus 366 ~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 444 (502)
.+++ .+++++.++.|++||+..++.+..+..|...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...|.
T Consensus 186 ~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~ 265 (289)
T cd00200 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT 265 (289)
T ss_pred CCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEE
Confidence 8876 788888899999999999999998988999999999999999999998899999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+++|+|++. .+++++.++.+++|.
T Consensus 266 ~~~~~~~~~-------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 266 SLAWSPDGK-------RLASGSADGTIRIWD 289 (289)
T ss_pred EEEECCCCC-------EEEEecCCCeEEecC
Confidence 999999987 788888889999984
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.5e-30 Score=222.94 Aligned_cols=266 Identities=20% Similarity=0.327 Sum_probs=222.6
Q ss_pred cccCCCCcccccCCCCceeeeCC-----CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCC
Q 010754 183 GEKGPEPMDIATTSASESFEIPN-----SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP 257 (502)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~ 257 (502)
..-.|....+++++.+..+-+++ +...+++||++.|..+.|.++++.|++++.|.+++.||+++++.+.
T Consensus 53 ~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r------ 126 (338)
T KOG0265|consen 53 IKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR------ 126 (338)
T ss_pred EEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee------
Confidence 34455666677777777776665 3367889999999999999999999999999999999999988543
Q ss_pred ceeEEEeeecCccccCCCCeEEEEECCCC-CEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC
Q 010754 258 LNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD 336 (502)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~v~~l~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 336 (502)
....|...|.++.-+.-| .++.+|+.||++++||++.+....+...+-.++++.|...+..+.+|+-|
T Consensus 127 -----------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 127 -----------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred -----------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc
Confidence 223456678887744444 46778889999999999877666666667889999999999999999999
Q ss_pred CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCC----cceEEEecCCC----cEEEEEEc
Q 010754 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGEN----RPIKTFAGHQG----EVNCVKWD 407 (502)
Q Consensus 337 ~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~----~~~~~~~~h~~----~i~~l~~s 407 (502)
+.|++||++.+.....+.+|..+|+.+..++.+. +.+-+.|.++++||++.. +++..+.+|.. ....++|+
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 9999999999999999999999999999977655 667799999999999854 45778887743 35578999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceE
Q 010754 408 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 408 p~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
|+++.+.+|+.|..+++||......+..+.+|.+.|.++.|+|..+ .++++++|.++.
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~-------iils~~sdk~i~ 333 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEP-------IILSCSSDKTIY 333 (338)
T ss_pred CCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCc-------EEEEeccCceeE
Confidence 9999999999999999999999999999999999999999999988 555666666544
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=227.05 Aligned_cols=268 Identities=22% Similarity=0.285 Sum_probs=230.4
Q ss_pred cCCCCcccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCcee
Q 010754 185 KGPEPMDIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNV 260 (502)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~ 260 (502)
..|....+++++.+....|+ .+...+|.||...|..+++|+...+|++++.|+.|+.||++..+.+
T Consensus 159 vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI---------- 228 (460)
T KOG0285|consen 159 VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI---------- 228 (460)
T ss_pred eCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhH----------
Confidence 34555556777777666554 3445678999999999999999999999999999999999987643
Q ss_pred EEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeE
Q 010754 261 LVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTA 339 (502)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i 339 (502)
.+..+|-..|.|++.+|.-..|++|+.|.+++|||++. ..+..+.+|+.+|..+.+.|....+++|+.|++|
T Consensus 229 -------R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 229 -------RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred -------HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 34456678899999999999999999999999999885 5677899999999999999988999999999999
Q ss_pred EEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 340 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 340 ~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
++||++.|+....+..|...+.+++.+|....++++.-..|+.|++..+..+..+.+|..-|++++.+.|| ++++|++.
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn 380 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN 380 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCc
Confidence 99999999999999999999999999987765555555678999999999999999999999999998776 77899999
Q ss_pred CcEEEEECCCCeeEEEec--------cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 420 VTAKIWNMKQDKYVHDLR--------EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 420 g~i~iwd~~~~~~~~~~~--------~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|.|.+||.+++-..+.+. .....|++.+|...|. +|+++.+|.++++|--+
T Consensus 381 g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~-------rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS-------RLITGEADKTIKMYKED 439 (460)
T ss_pred eEEEEEecCcCcccccccccccCCccccccceeEEeecccCc-------eEEeccCCcceEEEecc
Confidence 999999999987655442 1234699999999998 99999999999999643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=268.93 Aligned_cols=248 Identities=18% Similarity=0.348 Sum_probs=206.3
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLL 289 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l 289 (502)
+.+|.+.|++++|+|+|++||+|+.|++|+||++.......... ..... . ..+...|.+++|++ ++.+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~--~~~~~---~-----~~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI--HYPVV---E-----LASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc--ccceE---E-----ecccCceeeEEeccCCCCEE
Confidence 44599999999999999999999999999999986421100000 00000 0 11235699999987 57899
Q ss_pred EEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC
Q 010754 290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~ 367 (502)
++++.||.|++||+. +.....+.+|...|++++|+| ++.+|++|+.|++|++||++++..+..+..+ ..+.++.|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~ 627 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPS 627 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeC
Confidence 999999999999976 466778889999999999997 7889999999999999999999988888754 5788999943
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCc-ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeeEEEecc
Q 010754 368 --NVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------DKYVHDLRE 438 (502)
Q Consensus 368 --~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~------~~~~~~~~~ 438 (502)
+..+++|+.|+.|++||+++.. ++..+.+|...|+++.|. ++.+|++++.|++|+|||++. .+++..+.+
T Consensus 628 ~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 628 ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence 5679999999999999998765 677888999999999997 788999999999999999974 367888999
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|...+..++|+|+|. .+++++.|+.+++|...
T Consensus 707 h~~~i~~v~~s~~~~-------~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 707 HTNVKNFVGLSVSDG-------YIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCCeeEEEEcCCCC-------EEEEEeCCCEEEEEECC
Confidence 999999999999987 77888889999999743
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-29 Score=213.22 Aligned_cols=259 Identities=23% Similarity=0.409 Sum_probs=210.4
Q ss_pred ccccCCCCceeeeCCCc-------eEEe-ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 191 DIATTSASESFEIPNSD-------VTIL-EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~~~-------~~~l-~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
.+++.+.+..+++.... ..+| .+|+..|..++|+|.|++||+||.|+++.||.-..+...
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efe------------ 96 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFE------------ 96 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCcee------------
Confidence 45666777766665433 2333 479999999999999999999999999999986655421
Q ss_pred EeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC----ceEEEecCccCCeEEEEEecCCCEEEEEecCCe
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~ 338 (502)
......+|...|.|++|+++|++||+|+.|..|-||.+.. .+...+..|...|..+.|+|....|++++.|++
T Consensus 97 ---cv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 97 ---CVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred ---EEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCe
Confidence 2334456788999999999999999999999999998762 456788999999999999999999999999999
Q ss_pred EEEEEcC---CCceEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEE
Q 010754 339 AIVWDVK---TEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 414 (502)
Q Consensus 339 i~~wd~~---~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 414 (502)
|++|+-. ...+.+++.+|...|.+++|.+ +.++++++.|++++||.....-+ ..|...+..+.|. ...||
T Consensus 174 Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 174 IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD--NGVIA 247 (312)
T ss_pred EEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec--ccceE
Confidence 9999865 3457889999999999999988 55899999999999998764322 2377889999998 45899
Q ss_pred EEeCCCcEEEEECCCC------eeEE-EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 415 SCSDDVTAKIWNMKQD------KYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 415 s~s~dg~i~iwd~~~~------~~~~-~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|++.|+.|+++.-... +.+. .-..|...|++++|.|.+. ..|++++.||.+++|.+
T Consensus 248 S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~------~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 248 SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS------NRLASGGDDGIVNFWEL 310 (312)
T ss_pred eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC------CceeecCCCceEEEEEe
Confidence 9999999999986542 1121 2247889999999999543 36788888899999965
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=242.73 Aligned_cols=239 Identities=20% Similarity=0.268 Sum_probs=213.0
Q ss_pred CceeeeCCCc----eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccC
Q 010754 198 SESFEIPNSD----VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273 (502)
Q Consensus 198 ~~~~~~~~~~----~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (502)
.+.+.+++-. ++.+.-..-+|.++.|-+..+++++|+.|..|+||+..+...+ ..+..|
T Consensus 34 nG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-----------------~~FeAH 96 (794)
T KOG0276|consen 34 NGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-----------------KTFEAH 96 (794)
T ss_pred cCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee-----------------EEeecc
Confidence 3444555433 4455556789999999999999999999999999999987632 223456
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceE
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWK 350 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 350 (502)
...|.+++.+|...++++++.|-+|++||.++ .+.+++.+|..-|.+++|+| |.+.|++++.|++|++|.+.+..+.
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n 176 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN 176 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc
Confidence 78899999999999999999999999999876 46778999999999999999 5589999999999999999999999
Q ss_pred EEEeeccCCeEEEEecCCC---EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 351 QQFEFHSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 351 ~~~~~~~~~v~~v~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
.++.+|...|.+++|-+.+ .+++|+.|.+|+|||..+..+++++.||...|+.+.|+|.-.+++|||+||++|||+.
T Consensus 177 fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 177 FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence 9999999999999997766 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.+.++..++.-.-..|++|+-.+.+.
T Consensus 257 ~Ty~lE~tLn~gleRvW~I~~~k~~~ 282 (794)
T KOG0276|consen 257 KTYKLEKTLNYGLERVWCIAAHKGDG 282 (794)
T ss_pred cceehhhhhhcCCceEEEEeecCCCC
Confidence 99998888887777899999888776
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-29 Score=264.76 Aligned_cols=238 Identities=23% Similarity=0.333 Sum_probs=199.9
Q ss_pred CCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEE
Q 010754 214 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLAT 291 (502)
Q Consensus 214 H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s 291 (502)
+...|.+++|+|. +.+|++++.||+|++||+.+++.. .....|...|++++|+| ++.+|++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~-----------------~~~~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV-----------------TEMKEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE-----------------EEecCCCCCEEEEEEcCCCCCEEEE
Confidence 3467999999984 789999999999999999875421 12245678899999997 7899999
Q ss_pred EECCCeEEEEECCC-ceEEEecCccCCeEEEEEe-cCCCEEEEEecCCeEEEEEcCCCc-eEEEEeeccCCeEEEEecCC
Q 010754 292 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRNN 368 (502)
Q Consensus 292 ~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~v~~~~~ 368 (502)
|+.||.|++||+.. .....+. +...|.++.|+ +++.+|++|+.||.|++||+++.. .+..+.+|...|..+.|.++
T Consensus 594 gs~Dg~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~ 672 (793)
T PLN00181 594 GSDDGSVKLWSINQGVSIGTIK-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS 672 (793)
T ss_pred EcCCCEEEEEECCCCcEEEEEe-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCC
Confidence 99999999999874 4444554 34689999995 478999999999999999998765 46677889999999999988
Q ss_pred CEEEEEeCCCeEEEEEcCC------CcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe------
Q 010754 369 VSFATSSTDNMIYVCKIGE------NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL------ 436 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~------~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~------ 436 (502)
..+++++.|+.|++||++. ..++..+.+|...+++++|+|++.+|++|+.||.|+||+......+..+
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~ 752 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTID 752 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCC
Confidence 8999999999999999974 3578899999999999999999999999999999999998765443222
Q ss_pred -------ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 437 -------REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 437 -------~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..|...|.+++|+|+|. .+++|+.++.+++|..
T Consensus 753 ~~~~~~~~~~~~~V~~v~ws~~~~-------~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 753 PVSGLEVDDASQFISSVCWRGQSS-------TLVAANSTGNIKILEM 792 (793)
T ss_pred cccccccCCCCcEEEEEEEcCCCC-------eEEEecCCCcEEEEec
Confidence 23455699999999998 7888999999999963
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=218.21 Aligned_cols=199 Identities=17% Similarity=0.368 Sum_probs=183.3
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEEC-CCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC--
Q 010754 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-- 347 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-- 347 (502)
.+|...|.++.|++|.++|++++.||.+.|||. .+.....+.-...-|..++|+|.|+++++|+.|+...||++.+.
T Consensus 52 kGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 456788999999999999999999999999994 45566667777788999999999999999999999999999865
Q ss_pred ----ceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcC-CCCEEEEEeCCCcE
Q 010754 348 ----EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTA 422 (502)
Q Consensus 348 ----~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp-~g~~las~s~dg~i 422 (502)
...+.+.+|.+-+.++.|.++..+++++.|.+..+||+.+++.+..|.||.+.|.++.++| +++.+++|+-|+..
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence 3556788999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++||++.+.+++.|.+|.+.|++|+|.|+|. .+.++|.|++.++++.
T Consensus 212 klWD~R~~~c~qtF~ghesDINsv~ffP~G~-------afatGSDD~tcRlyDl 258 (343)
T KOG0286|consen 212 KLWDVRSGQCVQTFEGHESDINSVRFFPSGD-------AFATGSDDATCRLYDL 258 (343)
T ss_pred eeeeccCcceeEeecccccccceEEEccCCC-------eeeecCCCceeEEEee
Confidence 9999999999999999999999999999998 6778888888888864
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=235.30 Aligned_cols=234 Identities=21% Similarity=0.398 Sum_probs=205.5
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
..+.|+|+.+. ...+++|..|.+|+|||..+-.+ .....+|++.|.|+.|. .+.|++|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c-----------------~~~L~GHtGSVLCLqyd--~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLEC-----------------LKILTGHTGSVLCLQYD--ERVIVSGS 254 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHH-----------------HHhhhcCCCcEEeeecc--ceEEEecC
Confidence 45789999984 56799999999999999876542 33456788999999986 45999999
Q ss_pred CCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc---eEEEEeeccCCeEEEEecCCC
Q 010754 294 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNV 369 (502)
Q Consensus 294 ~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~v~~~~~~ 369 (502)
.|.+|+|||.+ +..+.++..|...|..+.|+. .++++++.|.++.+||+.+.. +.+.+.+|...|..+.|...
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k- 331 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK- 331 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-
Confidence 99999999987 567778899999999999974 699999999999999997654 34456789999999999766
Q ss_pred EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEc
Q 010754 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~s 449 (502)
.+++++.|.+|++|++.+...++++.+|...|.|+.+. |+++++||.|.+|++||+..|.|++.+.+|..-|.++.|.
T Consensus 332 yIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 409 (499)
T ss_pred eEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec
Confidence 89999999999999999999999999999999999885 8999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCccEEEEeecCceEEEEeeeEEEe
Q 010754 450 PTGSGTNNPNQQLILARLIPYFLYWICSIYFKY 482 (502)
Q Consensus 450 p~g~~~~~~~~~l~las~~~~~~iw~~~~~~~~ 482 (502)
.. .++.|..||.+++|++.....+
T Consensus 410 ~k---------rIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 410 NK---------RIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred Cc---------eeeeccccceEEEEecccccCC
Confidence 65 6799999999999987665555
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=224.52 Aligned_cols=262 Identities=24% Similarity=0.409 Sum_probs=217.5
Q ss_pred ccccCCCCce---eeeCCCceEEeccCCCceEEEEEcCCC---CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEe
Q 010754 191 DIATTSASES---FEIPNSDVTILEGHTSEVCACAWSPAG---SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264 (502)
Q Consensus 191 ~~~~~~~~~~---~~~~~~~~~~l~~H~~~V~~~~~~p~~---~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 264 (502)
.|.++.-+.. +....+.+.++.||.++|.+++|.-.. ..|++++.|.++++|.++.+.....
T Consensus 117 ~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~------------ 184 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK------------ 184 (423)
T ss_pred eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh------------
Confidence 4455544444 445567789999999999999987533 3699999999999999987653211
Q ss_pred eecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC--------------------------CceEEEecCccCCe
Q 010754 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN--------------------------GDLKCTLSKHKGPI 318 (502)
Q Consensus 265 ~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~--------------------------~~~~~~~~~~~~~v 318 (502)
......+|...|-+++..++|..+++|+.|..|.||+.. ...+..+.+|..+|
T Consensus 185 -~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 185 -ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV 263 (423)
T ss_pred -HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence 111223788999999999999999999999999999821 11355778999999
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCc---ceEEE
Q 010754 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR---PIKTF 394 (502)
Q Consensus 319 ~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~---~~~~~ 394 (502)
.++.|++ ...+++++.|.+|+.||+.++..+.++.+ ...+.++++.+. ..+++|+.|..|++||.+++. +..+|
T Consensus 264 s~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 264 SSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred eeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEee
Confidence 9999998 67899999999999999999998887764 456889999774 558899999999999999874 56789
Q ss_pred ecCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceE
Q 010754 395 AGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 395 ~~h~~~i~~l~~sp~g~-~las~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
.+|.+.|.++.|+|... .|++|+.|+++++||+++.+ ++..+.+|...|.++.|..-+. +++|+.|..++
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~--------IvSGGaD~~l~ 413 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGL--------IVSGGADNKLR 413 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCce--------EEeccCcceEE
Confidence 99999999999999765 58999999999999999988 9999999999999999998764 78999999998
Q ss_pred EEE
Q 010754 473 YWI 475 (502)
Q Consensus 473 iw~ 475 (502)
++-
T Consensus 414 i~~ 416 (423)
T KOG0313|consen 414 IFK 416 (423)
T ss_pred Eec
Confidence 874
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=216.40 Aligned_cols=240 Identities=25% Similarity=0.452 Sum_probs=202.9
Q ss_pred CCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEE
Q 010754 215 TSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATG 292 (502)
Q Consensus 215 ~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~ 292 (502)
.+.++.++|+++ .+.+++++.||+++|||+.... .+......|...|.++.|++ .++.++++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s----------------~Pi~~~kEH~~EV~Svdwn~~~r~~~lts 123 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS----------------KPIHKFKEHKREVYSVDWNTVRRRIFLTS 123 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC----------------cchhHHHhhhhheEEeccccccceeEEee
Confidence 477999999996 6799999999999999954322 12344566788999999998 56678889
Q ss_pred ECCCeEEEEECC-CceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec--CC
Q 010754 293 SYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--NN 368 (502)
Q Consensus 293 ~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~--~~ 368 (502)
+.||+|++|+.+ ...+.++.+|...|+..+|+| ..+.+++++.|+++++||++.......+..|...+.++.|+ +.
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC
Confidence 999999999965 677889999999999999999 55899999999999999998765555588899999999995 46
Q ss_pred CEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCC-CeeEEEeccCCCcEEE
Q 010754 369 VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYT 445 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~ 445 (502)
..+++|+.|+.|+.||+++- .++..+.+|.-.|..++|||. ..+|||++.|-++||||... ..++.+...|+.-+..
T Consensus 204 ~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g 283 (311)
T KOG0277|consen 204 NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG 283 (311)
T ss_pred cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec
Confidence 67999999999999999975 578999999999999999996 46899999999999999874 4556667788888999
Q ss_pred EEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 446 IRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.||+-.. .++...+-|..+.||..
T Consensus 284 ~Dws~~~~------~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 284 LDWSLFDP------GQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccccC------ceeeecccccceeeecc
Confidence 99999754 35566677888998874
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=220.71 Aligned_cols=263 Identities=22% Similarity=0.352 Sum_probs=208.3
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCC----ccCCCCCCCceeEEEeeecCccccCCCCeEE
Q 010754 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT----SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 279 (502)
Q Consensus 204 ~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (502)
+.-....+..|++++.+.+|+|||.++|||+.|..|+|.|++..- ......+.... -.........|...|++
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa---~hPvIRTlYDH~devn~ 177 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQA---RHPVIRTLYDHVDEVND 177 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCccc---CCceEeehhhccCcccc
Confidence 344567889999999999999999999999999999999998421 11111111100 01123344567889999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCceE---EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE---
Q 010754 280 LDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF--- 353 (502)
Q Consensus 280 l~~s~~g~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--- 353 (502)
+.|+|....|++|+.|++|++||...... ........+|.++.|+|.|.+|++|..-.++++||+.+.++...-
T Consensus 178 l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd 257 (430)
T KOG0640|consen 178 LDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD 257 (430)
T ss_pred eeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc
Confidence 99999999999999999999999764321 223345678999999999999999999999999999998876544
Q ss_pred eeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEe-cCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 354 EFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 354 ~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~-~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
..|.+.|+++.+++. ..+++++.||.|++||--+++++.++. +|. ..|.+..|..+|+|+++.+.|..+++|.+.++
T Consensus 258 ~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 258 DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 347889999999765 558899999999999999999998884 454 46999999999999999999999999999887
Q ss_pred eeEEEe-------------------------------------------------ccCCCcEEEEEEccCCCCCCCCCcc
Q 010754 431 KYVHDL-------------------------------------------------REHSKEIYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 431 ~~~~~~-------------------------------------------------~~h~~~i~~v~~sp~g~~~~~~~~~ 461 (502)
+++..+ .+|++.+..+.-||.++ .
T Consensus 338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p-------~ 410 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP-------A 410 (430)
T ss_pred ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC-------c
Confidence 654333 25677777788888777 6
Q ss_pred EEEEeecCceEEEEe
Q 010754 462 LILARLIPYFLYWIC 476 (502)
Q Consensus 462 l~las~~~~~~iw~~ 476 (502)
+++++.|...++|--
T Consensus 411 FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYR 425 (430)
T ss_pred eeeecccceeeeeee
Confidence 788888888888853
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=237.54 Aligned_cols=243 Identities=21% Similarity=0.361 Sum_probs=213.0
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..+......|+|++|++..++||+|-..|...+|.+++-.++.. + .-....|..++|+..|..
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~-------------L----Sis~~~I~t~~~N~tGDW 321 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHS-------------L----SISDQKILTVSFNSTGDW 321 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEE-------------e----ecccceeeEEEecccCCE
Confidence 34444557899999999999999999999999999987653221 1 111356999999999999
Q ss_pred EEEEECC-CeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 289 LATGSYD-GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 289 l~s~~~d-g~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
||.|+.. |.+-||+... ..+....+|...+.+++++|||++++||+.||.|+|||..++-|..+|..|...|+.+.|.
T Consensus 322 iA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFT 401 (893)
T ss_pred EEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEE
Confidence 9999865 8999999764 5566778999999999999999999999999999999999999999999999999999996
Q ss_pred C-CCEEEEEeCCCeEEEEEcCCCcceEEEecCC-CcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeeEEEeccCCCcE
Q 010754 367 N-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSKEI 443 (502)
Q Consensus 367 ~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-~~i~~l~~sp~g~~las~s~dg-~i~iwd~~~~~~~~~~~~h~~~i 443 (502)
. +..+++.+.||+|+.||+...+..++|.... -...|++.+|.|.++++|+.|. .|+||++.+|+++-.+.||.+||
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPV 481 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcc
Confidence 5 5568899999999999999999999997654 3577899999999999999885 59999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 444 YTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 444 ~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.+++|+|+|+ .|..+|.|.++++|+
T Consensus 482 s~l~f~~~~~-------~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 482 SGLSFSPDGS-------LLASGSWDKTVRIWD 506 (893)
T ss_pred eeeEEccccC-------eEEeccccceEEEEE
Confidence 9999999999 788888899999995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=242.10 Aligned_cols=235 Identities=19% Similarity=0.234 Sum_probs=187.6
Q ss_pred EEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC-
Q 010754 209 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG- 286 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g- 286 (502)
..+.||.+.|++++|+| ++++|++|+.|++|++||+.++...... ........+|...|.+++|+|++
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~----------~~~l~~L~gH~~~V~~l~f~P~~~ 138 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI----------SDPIVHLQGHTKKVGIVSFHPSAM 138 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc----------CcceEEecCCCCcEEEEEeCcCCC
Confidence 45789999999999999 7899999999999999999865321100 00112234678899999999975
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC-eEEEE
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~v~ 364 (502)
++|++|+.|+.|+|||++ +.....+..|...|.+++|+|+|++|++++.|++|++||+++++.+..+..|.+. +..+.
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL 218 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE
Confidence 699999999999999987 4566678889999999999999999999999999999999999999888888765 34567
Q ss_pred ecCC-CEEEEEe----CCCeEEEEEcCCCc-ceEEEecC-CCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEe
Q 010754 365 WRNN-VSFATSS----TDNMIYVCKIGENR-PIKTFAGH-QGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 365 ~~~~-~~~~~~~----~d~~i~i~d~~~~~-~~~~~~~h-~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~ 436 (502)
|.++ ..+++++ .|+.|++||+++.. ++.....+ ...+....|++++++|++|+ .||.|++||+.+++++...
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 7654 4555544 47899999998754 44444433 34566678999999999887 5999999999999887765
Q ss_pred c-cCCCcEEEEEEccCCC
Q 010754 437 R-EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 437 ~-~h~~~i~~v~~sp~g~ 453 (502)
. .+..++..++|.|.-.
T Consensus 299 ~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 299 SYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred eccCCCCCcceEeccccc
Confidence 4 3556788999999754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=217.64 Aligned_cols=246 Identities=18% Similarity=0.290 Sum_probs=218.7
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+-++.||++.|+.++++.+-.+.|+++.|-+.+|||.-++..+.. ..|..-|.+++|+.|.+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs------------------f~hkhivk~~af~~ds~ 113 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS------------------FEHKHIVKAVAFSQDSN 113 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh------------------hhhhheeeeEEecccch
Confidence 678999999999999999988999999999999999888764322 23455699999999999
Q ss_pred EEEEEECCCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 288 LLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
+|++|+.+..+||||++. .....+.+|.+.|..+-|....+.|++++.|++|++||.+++..++++. ...+|.++..
T Consensus 114 ~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv 192 (334)
T KOG0278|consen 114 YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV 192 (334)
T ss_pred hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceee
Confidence 999999999999999874 4566788999999999999999999999999999999999999999887 4568999999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ccCCCcEE
Q 010754 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-REHSKEIY 444 (502)
Q Consensus 366 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~-~~h~~~i~ 444 (502)
++++.+++....+.|.+||..+-..++.+. -...|.+..++|+...+++|++|+.++.||..++..+..+ ++|.++|.
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 999999999999999999999999888887 4467999999999999999999999999999999998886 89999999
Q ss_pred EEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEE
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYF 480 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~ 480 (502)
++.|+|+|. ....+|.||++++|......
T Consensus 272 cVrFSPdGE-------~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 272 CVRFSPDGE-------LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEECCCCc-------eeeccCCCceEEEEEecCCC
Confidence 999999998 55667778999999865543
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=235.75 Aligned_cols=259 Identities=22% Similarity=0.314 Sum_probs=221.6
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCC---------------------ceeEEEe--e
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP---------------------LNVLVLK--H 265 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~---------------------~~~~~~~--~ 265 (502)
..+.||...|.+++++.+...+++|+. +.++||+..+.+++.++...- +.++.+. .
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 456799999999999998888888866 789999999888776654331 1111110 1
Q ss_pred ecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC------CceEE-------EecCccCCeEEEEEecCCCEEEE
Q 010754 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN------GDLKC-------TLSKHKGPIFSLKWNKKGDYLLT 332 (502)
Q Consensus 266 ~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~------~~~~~-------~~~~~~~~v~~l~~~~~~~~l~s 332 (502)
+......|.+.|.+++.+||++.+++|+.|.+|++||.. +.... ....-...|.|+.+||+|++|++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 122334789999999999999999999999999999953 21111 11124567999999999999999
Q ss_pred EecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC
Q 010754 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 411 (502)
Q Consensus 333 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~ 411 (502)
+-.|++|++|-+.+.+....+.+|.-||.+++.+++. .++||+.|..|++|-+.-|.+-+.|.+|.+.|.++.|-|...
T Consensus 526 sLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~ 605 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH 605 (888)
T ss_pred EeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccce
Confidence 9999999999999999999999999999999998765 588999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 412 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 412 ~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
++.+|+.|+.|+-||..+.+++..+.+|...|++++.+|+|+ .++++|-|..+++|-
T Consensus 606 ~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~-------~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 606 LFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGS-------FVVSSSHDKSIRLWE 662 (888)
T ss_pred eEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCC-------eEEeccCCceeEeee
Confidence 999999999999999999999999999999999999999998 778888889999994
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-29 Score=210.04 Aligned_cols=238 Identities=23% Similarity=0.422 Sum_probs=200.4
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCC
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGT 287 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~ 287 (502)
+.+++|...|.+++|+.+|..|++|+.|+++++|++...... ......+|...|-.++|+| ...
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~---------------~~~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR---------------KELVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh---------------hhhcccCCCcchhhheeCCCCCc
Confidence 567899999999999999999999999999999999876422 1223346777899999988 567
Q ss_pred EEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe-
Q 010754 288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW- 365 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~- 365 (502)
.+++++.|..|++||.+. ++...... ++.-.-+.|+|+|.++++++.|..|.+.|.++.+.+..... .-.+..++|
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~ 156 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWN 156 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeec
Confidence 999999999999999764 44444443 34445689999999999999999999999999887776553 334667777
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEE
Q 010754 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (502)
Q Consensus 366 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 445 (502)
.+++.|+....-|+|.|.....-+++.++.+|.....||.|+|+|++||+|+.|..+.+||+..--|++.+.-+.=||..
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRT 236 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRT 236 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEE
Confidence 45667777777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCccEEEEeecCceE
Q 010754 446 IRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
+.||.||+ ++||++.+..
T Consensus 237 lSFS~dg~---------~lASaSEDh~ 254 (313)
T KOG1407|consen 237 LSFSHDGR---------MLASASEDHF 254 (313)
T ss_pred EEeccCcc---------eeeccCccce
Confidence 99999999 6666665543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=242.90 Aligned_cols=259 Identities=15% Similarity=0.289 Sum_probs=204.4
Q ss_pred EEec-cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccC---------------------------C--------
Q 010754 209 TILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG---------------------------G-------- 252 (502)
Q Consensus 209 ~~l~-~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~---------------------------~-------- 252 (502)
+-+. +|.+.|+++.|++||++||+||.|+.|+||.+....... .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 899999999999999999999999999999987611000 0
Q ss_pred ---CCCCC--ce---eEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEe
Q 010754 253 ---AQNGP--LN---VLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN 324 (502)
Q Consensus 253 ---~~~~~--~~---~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~ 324 (502)
..... ++ ......+...+.+|..+|..|.||.+ ++|++++.|.+|++|++..+.......|..-|+|++|+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 00000 00 00011123445689999999999976 58999999999999999877777777899999999999
Q ss_pred c-CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecC-----
Q 010754 325 K-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGH----- 397 (502)
Q Consensus 325 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h----- 397 (502)
| |.+||++|+.||.|+||++...+.+.-...+ .-|++++|.|++. .++|+.+|.+++|+....+....+..+
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9 6799999999999999999887766655544 7899999988766 678899999999999988766554321
Q ss_pred ---CCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeccCCC--cEEEEEEccCCCCCCCCCccEEEEeecCce
Q 010754 398 ---QGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILARLIPYF 471 (502)
Q Consensus 398 ---~~~i~~l~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~h~~--~i~~v~~sp~g~~~~~~~~~l~las~~~~~ 471 (502)
...|+++.|.|... .|+..+.|..|||+|.+...+++.|+++.. .=....|+.||. .|+.|+-|..+
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk-------~IVs~seDs~V 570 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK-------HIVSASEDSWV 570 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCC-------EEEEeecCceE
Confidence 22799999998543 577778899999999999999999986532 345778999998 89999988999
Q ss_pred EEEEe
Q 010754 472 LYWIC 476 (502)
Q Consensus 472 ~iw~~ 476 (502)
.+|..
T Consensus 571 YiW~~ 575 (712)
T KOG0283|consen 571 YIWKN 575 (712)
T ss_pred EEEeC
Confidence 99975
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=227.37 Aligned_cols=218 Identities=23% Similarity=0.342 Sum_probs=176.9
Q ss_pred eeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 201 FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 201 ~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
..||...-..|++|+..|.++++.|.|.+|++||.|.+|++||+...... ++.+..........|.++
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~P~E~h~i~sl 220 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQPCETHQINSL 220 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccCccccccccee
Confidence 35778888899999999999999999999999999999999999875421 122333334446679999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCceEE-------------EecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCC
Q 010754 281 DWNGEGTLLATGSYDGQARIWSTNGDLKC-------------TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKT 346 (502)
Q Consensus 281 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~ 346 (502)
+|++.|..|++.+....++|+|.+|..+. ...+|...++|.+|+|.. ..|++++.||++++||+..
T Consensus 221 ~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 221 QYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred eecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 99999999999999999999998876543 345799999999999965 6899999999999999965
Q ss_pred Cc-eEEEEee-----ccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCc--c-eEEEecCCC--cEEEEEEcCCCCEEE
Q 010754 347 EE-WKQQFEF-----HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENR--P-IKTFAGHQG--EVNCVKWDPTGSLLA 414 (502)
Q Consensus 347 ~~-~~~~~~~-----~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~--~-~~~~~~h~~--~i~~l~~sp~g~~la 414 (502)
.+ .++.+.. ..-+++.+.|++++ .|++|+.||.|.+|+.++.. + ...-.+|.. .|+||.||++|++|+
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence 43 3333332 23468899997765 48889999999999986543 2 334457876 899999999999999
Q ss_pred EEeCCCcEEEEECCCC
Q 010754 415 SCSDDVTAKIWNMKQD 430 (502)
Q Consensus 415 s~s~dg~i~iwd~~~~ 430 (502)
|-+.|+++++||++..
T Consensus 381 SRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQF 396 (641)
T ss_pred hccCCCceeeeecccc
Confidence 9999999999999753
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=206.19 Aligned_cols=243 Identities=19% Similarity=0.299 Sum_probs=203.4
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..|+||..+++-+.++.+|.+|++++.|.++.+|-..+++. .+...+|.+.|+|++.+.+.++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-----------------lGty~GHtGavW~~Did~~s~~ 66 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-----------------LGTYDGHTGAVWCCDIDWDSKH 66 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-----------------eeeecCCCceEEEEEecCCcce
Confidence 35789999999999999999999999999999998877663 3455678899999999999999
Q ss_pred EEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-----CCeEEEEEcC-------CCceEEEEeec
Q 010754 289 LATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDVK-------TEEWKQQFEFH 356 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-----d~~i~~wd~~-------~~~~~~~~~~~ 356 (502)
+++|+.|.++++||+........-....+|..+.|+++|++++.+.. .+.|.++|++ ...+...+..+
T Consensus 67 liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 67 LITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred eeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 99999999999999886655555567789999999999998887654 4679999998 45567778888
Q ss_pred cCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCc-ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--
Q 010754 357 SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-- 432 (502)
Q Consensus 357 ~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~-- 432 (502)
...++.+-|.+ +..+++|..||.|.+||++++. .+..-..|...|+.|+++|+..+++++|.|.+-++||+.+-.+
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE
Confidence 88999999977 4568889999999999999984 5666678999999999999999999999999999999865322
Q ss_pred -----------------------------------------------------EEEeccCCCcEEEEEEccCCCCCCCCC
Q 010754 433 -----------------------------------------------------VHDLREHSKEIYTIRWSPTGSGTNNPN 459 (502)
Q Consensus 433 -----------------------------------------------------~~~~~~h~~~i~~v~~sp~g~~~~~~~ 459 (502)
+..+++|-+||++|+|||+|.
T Consensus 227 ty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk------ 300 (327)
T KOG0643|consen 227 TYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK------ 300 (327)
T ss_pred EeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc------
Confidence 334578999999999999998
Q ss_pred ccEEEEeecCceEEEE
Q 010754 460 QQLILARLIPYFLYWI 475 (502)
Q Consensus 460 ~~l~las~~~~~~iw~ 475 (502)
-...++.|+.+++..
T Consensus 301 -sYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 301 -SYSSGGEDGYVRLHH 315 (327)
T ss_pred -ccccCCCCceEEEEE
Confidence 334444556666653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=225.60 Aligned_cols=262 Identities=23% Similarity=0.339 Sum_probs=214.0
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEee--ecCccccCCCCeEEEEECCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH--VKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~~ 285 (502)
++.+..|.-+|.||+++|+.++.++++.||+|.-|++.+++....+-..+ .+..... +......|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCcccccccceeEEEEEcCC
Confidence 67888999999999999999999999999999999999887442111110 0000000 11111377889999999999
Q ss_pred CCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 286 GTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
|++|++|+.|..|.||+.+. ..+..+.+|.+.|.+++|-...+.+++++.|++|++|++.....+.++.+|.+.|..|+
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999874 56667899999999999998889999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEe-CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-cCC--
Q 010754 365 WRNNVSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHS-- 440 (502)
Q Consensus 365 ~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~h~-- 440 (502)
-....+.++.+ .|+++++|++... ....|.+|.+.+-|++|-. ...+++||++|.|.+|++.+.+++.+.+ +|.
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 97777766554 9999999999544 4457888999999999984 4578899999999999999999887665 332
Q ss_pred ---------CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeE
Q 010754 441 ---------KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIY 479 (502)
Q Consensus 441 ---------~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~ 479 (502)
..|++++..|... .+.++|.++.+++|.+.-.
T Consensus 372 ~~~~~~~~~~Witsla~i~~sd-------L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSD-------LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CCccccccccceeeeEecccCc-------eEEecCCCCceEEEEecCC
Confidence 2688999998876 6667777799999975544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=221.87 Aligned_cols=244 Identities=24% Similarity=0.357 Sum_probs=211.5
Q ss_pred CceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 206 SDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
..+-.+.||...|.+|+|-|. .-+++||+.|++|.+|+=..- .+......|...|.|+.|+|
T Consensus 138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF-----------------KFk~s~r~HskFV~~VRysP 200 (603)
T KOG0318|consen 138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF-----------------KFKSSFREHSKFVNCVRYSP 200 (603)
T ss_pred CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe-----------------eeeecccccccceeeEEECC
Confidence 345678899999999999996 458999999999999974322 13445566788999999999
Q ss_pred CCCEEEEEECCCeEEEEE-CCCceEEEec---CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc---
Q 010754 285 EGTLLATGSYDGQARIWS-TNGDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS--- 357 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd-~~~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--- 357 (502)
||.++++++.||.|.+|| ..+..+..+. +|++.|+++.|+||+..|++++.|.+++|||+.+.++++++....
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 999999999999999999 4567777776 899999999999999999999999999999999999999887543
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-
Q 010754 358 GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL- 436 (502)
Q Consensus 358 ~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~- 436 (502)
.....+.|. +..+++.+.+|.|.+++.....+++++.||...|+++..+|++++|++|+.||.|.-|+..++..-+..
T Consensus 281 dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g 359 (603)
T KOG0318|consen 281 DQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAG 359 (603)
T ss_pred ceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccccc
Confidence 355667787 777999999999999999999999999999999999999999999999999999999999998875444
Q ss_pred ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 437 REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 437 ~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
++|+..|.+++-+..+. +++.+.|..+++-.
T Consensus 360 ~~h~nqI~~~~~~~~~~--------~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 360 KGHTNQIKGMAASESGE--------LFTIGWDDTLRVIS 390 (603)
T ss_pred ccccceEEEEeecCCCc--------EEEEecCCeEEEEe
Confidence 57999999999888665 67788888777653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-27 Score=236.54 Aligned_cols=236 Identities=19% Similarity=0.326 Sum_probs=179.8
Q ss_pred ceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+||++.++...... .........+|...|.+++|+|+
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------i~~p~~~L~gH~~~V~sVaf~P~ 136 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------IKDPQCILKGHKKKISIIDWNPM 136 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc---------cccceEEeecCCCcEEEEEECCC
Confidence 56789999999999999996 789999999999999999864311000 00011123456788999999998
Q ss_pred CCE-EEEEECCCeEEEEECCCce-EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 286 GTL-LATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 286 g~~-l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
+.. |++|+.||.|+|||++... ...+ .|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+.+...
T Consensus 137 g~~iLaSgS~DgtIrIWDl~tg~~~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 137 NYYIMCSSGFDSFVNIWDIENEKRAFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred CCeEEEEEeCCCeEEEEECCCCcEEEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 875 5789999999999987543 3344 366789999999999999999999999999999999999999998765433
Q ss_pred E-----ecC-CCEEEEEeCCC----eEEEEEcCC-CcceEEEecC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 364 D-----WRN-NVSFATSSTDN----MIYVCKIGE-NRPIKTFAGH--QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 364 ~-----~~~-~~~~~~~~~d~----~i~i~d~~~-~~~~~~~~~h--~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
. |++ +..+++++.++ .|++||++. ..++..+..+ .+.+......++|.++++|+.|++|++|++..+
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 2 223 45678877664 799999995 5677665433 233333444556899999999999999999876
Q ss_pred eeEEEec--cCCCcEEEEEEccCCC
Q 010754 431 KYVHDLR--EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 431 ~~~~~~~--~h~~~i~~v~~sp~g~ 453 (502)
. ++.+. .+..++.+++|.|...
T Consensus 296 ~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 296 S-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred c-EEeecccccCCCccceEEccccc
Confidence 4 33333 3667899999999864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-30 Score=230.68 Aligned_cols=251 Identities=23% Similarity=0.416 Sum_probs=193.6
Q ss_pred eeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE
Q 010754 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (502)
Q Consensus 202 ~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 281 (502)
.+|......+..|.+.|..+.|-++...|++|+.|..|++|++...+.. +.....+..+.|+.+.
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~---------------~~~tLaGs~g~it~~d 226 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE---------------LISTLAGSLGNITSID 226 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh---------------hhhhhhccCCCcceee
Confidence 3677777889999999999999999899999999999999998766521 2233344467899999
Q ss_pred ECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc---
Q 010754 282 WNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS--- 357 (502)
Q Consensus 282 ~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--- 357 (502)
|.++++++++++.|+.+++|+++ .....++.+|...|+++.|......+++|+.|.+|++||+....+.+++....
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cn 306 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCN 306 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccccc
Confidence 99999999999999999999987 46778899999999999998877668899999999999887766655433211
Q ss_pred -----------------------------------CCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecC----
Q 010754 358 -----------------------------------GPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGH---- 397 (502)
Q Consensus 358 -----------------------------------~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h---- 397 (502)
+.|+++..+.++ .+++++.|.++.+.|+++......+.+.
T Consensus 307 DI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 307 DIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred ceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 123333332222 2444455555555555554444444322
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCc--EEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 398 ~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~--i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
....+.+.|||++.|+|+||.||.|+||++.++++...++..+.+ |++++|+|.|+ .++.++-++.+++|
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~-------~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS-------GLLSADKQKAVTLW 458 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc-------hhhcccCCcceEec
Confidence 134778999999999999999999999999999999998865554 99999999999 66777777888888
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=232.20 Aligned_cols=239 Identities=24% Similarity=0.431 Sum_probs=209.4
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s 291 (502)
..+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.. .|...|.+++|+ +..+.+
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~----------------~h~~rvg~laW~--~~~lss 275 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG----------------SHASRVGSLAWN--SSVLSS 275 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC----------------CcCceeEEEecc--CceEEE
Confidence 34489999999999999999999999999999987664332211 167889999998 678999
Q ss_pred EECCCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC--
Q 010754 292 GSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-- 367 (502)
Q Consensus 292 ~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-- 367 (502)
|+.||.|..+|++. .....+.+|...|..++|++++.++++|+.|+.+.|||.....++..+..|...|.+++|+|
T Consensus 276 Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 276 GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ 355 (484)
T ss_pred ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc
Confidence 99999999999763 22234788999999999999999999999999999999988899999999999999999987
Q ss_pred CCEEEEEe--CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeccCCCcE
Q 010754 368 NVSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEI 443 (502)
Q Consensus 368 ~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s--~dg~i~iwd~~~~~~~~~~~~h~~~i 443 (502)
.+.||+|+ .|++|++||..++..+.... ..+.|+.|.|++..+-|+++. .++.|.||+..+.+.+..+.+|...|
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RV 434 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRV 434 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCccee
Confidence 45688764 69999999999999888776 567899999999987776654 46789999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 444 YTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 444 ~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..++|||||. .+++|++|.++++|.+
T Consensus 435 l~la~SPdg~-------~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 435 LYLALSPDGE-------TIVTGAADETLRFWNL 460 (484)
T ss_pred EEEEECCCCC-------EEEEecccCcEEeccc
Confidence 9999999998 8999999999999985
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-30 Score=223.89 Aligned_cols=255 Identities=19% Similarity=0.331 Sum_probs=210.2
Q ss_pred CCCceEEec-cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 204 PNSDVTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 204 ~~~~~~~l~-~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
|....+.++ |.++.+-|..|+|||++|++|+.||.|.+|+..+++....+.... ...+--+..+|.|++|
T Consensus 201 Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~fMMmd~aVlci~F 271 (508)
T KOG0275|consen 201 PTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDNFMMMDDAVLCISF 271 (508)
T ss_pred hHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hcceeecccceEEEee
Confidence 333334443 566778999999999999999999999999999988654332211 1122234678999999
Q ss_pred CCCCCEEEEEECCCeEEEEECC-CceEEEec-CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCe
Q 010754 283 NGEGTLLATGSYDGQARIWSTN-GDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 360 (502)
+.|..++|+|+.||.|++|.+. +.++..+. .|...|+|+.|+.++..+++++.|.++++.-+.+|++++.|.+|.+-|
T Consensus 272 SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 272 SRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred cccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccc
Confidence 9999999999999999999976 55666665 899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEe--------------------------------------------
Q 010754 361 LDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-------------------------------------------- 395 (502)
Q Consensus 361 ~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~-------------------------------------------- 395 (502)
....|.++ ..+++++.||+|++|+..+..++.+|+
T Consensus 352 n~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfs 431 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFS 431 (508)
T ss_pred cceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeec
Confidence 99999664 569999999999999998766554433
Q ss_pred ---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceE
Q 010754 396 ---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 396 ---~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
...+...+.+.+|.|.++.+.++|+.++.+.+.+|++.+.+..|...+..++-+|... .+.+-+.|+.++
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN-------llAsYsEDgllK 504 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN-------LLASYSEDGLLK 504 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc-------hhhhhcccchhh
Confidence 0123455677899999999999999999999999999999999999999999999987 333344556677
Q ss_pred EE
Q 010754 473 YW 474 (502)
Q Consensus 473 iw 474 (502)
+|
T Consensus 505 LW 506 (508)
T KOG0275|consen 505 LW 506 (508)
T ss_pred hc
Confidence 77
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=237.67 Aligned_cols=264 Identities=19% Similarity=0.309 Sum_probs=224.2
Q ss_pred CCCCcccccCCCCceeeeCCCce----EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeE
Q 010754 186 GPEPMDIATTSASESFEIPNSDV----TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL 261 (502)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~----~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~ 261 (502)
.|....+.+.-.++.++++.-+. ..+..|.++|..++|+|.+.++++|+.|.+|++|+..+.+++
T Consensus 18 HP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl----------- 86 (1202)
T KOG0292|consen 18 HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL----------- 86 (1202)
T ss_pred CCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh-----------
Confidence 45555666777777777776554 456799999999999999999999999999999999876643
Q ss_pred EEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEE
Q 010754 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~ 340 (502)
....+|-..|..+.|++.-..|+++|.|.+|+||+.. .+++..+.+|..-|.|..|+|....++++|.|-+|+
T Consensus 87 ------ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 87 ------FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVR 160 (1202)
T ss_pred ------hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEE
Confidence 3345667889999999999999999999999999976 578889999999999999999999999999999999
Q ss_pred EEEcCCCc-----------------------------eEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCc-
Q 010754 341 VWDVKTEE-----------------------------WKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR- 389 (502)
Q Consensus 341 ~wd~~~~~-----------------------------~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~- 389 (502)
+||+..-+ ..+.+.+|...|.-++|+|. ..|++|+.|+.|++|.+...+
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 99984211 23446678888999999885 568889999999999998766
Q ss_pred -ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec
Q 010754 390 -PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 390 -~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~ 468 (502)
.+.+..||.+.|+++-|+|...+++|.|+|++|+|||+...+.+++++......+.++-+|... ++.|+-|
T Consensus 241 WEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lN--------LfAAgHD 312 (1202)
T KOG0292|consen 241 WEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELN--------LFAAGHD 312 (1202)
T ss_pred eeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcc--------eeeeecC
Confidence 3677899999999999999999999999999999999999999999987777899999999987 4555555
Q ss_pred CceEEE
Q 010754 469 PYFLYW 474 (502)
Q Consensus 469 ~~~~iw 474 (502)
+.+.++
T Consensus 313 sGm~VF 318 (1202)
T KOG0292|consen 313 SGMIVF 318 (1202)
T ss_pred CceEEE
Confidence 555555
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-29 Score=238.15 Aligned_cols=231 Identities=26% Similarity=0.356 Sum_probs=198.2
Q ss_pred ccccCCCCceeeeC---CC-----ceEEeccCCCceEEEEEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeE
Q 010754 191 DIATTSASESFEIP---NS-----DVTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL 261 (502)
Q Consensus 191 ~~~~~~~~~~~~~~---~~-----~~~~l~~H~~~V~~~~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~ 261 (502)
.+++.+.+.+..++ +. .+....||++.|.+++++..+ .+|+++|.|+++++|++...+.... .
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------~ 450 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------P 450 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------c
Confidence 34556666666555 22 245668999999999998754 7999999999999999987432111 1
Q ss_pred EEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEE
Q 010754 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~ 340 (502)
...........|.+.|+|++++|+.+++|||+.|.+.+||+++ .....++.+|+..|+++.|+|..+.++|+|.|++|+
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 1122233445688999999999999999999999999999987 467779999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEeeccCCeEEEEe-cCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 341 VWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 341 ~wd~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
||.+.+..++++|.+|...|..+.| ..+..|++++.||.|++|++.++.++.++.+|++.|.+++.+|.+.+++||+.|
T Consensus 531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~D 610 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGD 610 (775)
T ss_pred EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCC
Confidence 9999999999999999999999999 556779999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCC
Q 010754 420 VTAKIWNMKQ 429 (502)
Q Consensus 420 g~i~iwd~~~ 429 (502)
|.|.+|.-.+
T Consensus 611 g~i~~wkD~T 620 (775)
T KOG0319|consen 611 GRIIFWKDVT 620 (775)
T ss_pred eEEEEeecCc
Confidence 9999997433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=210.61 Aligned_cols=231 Identities=24% Similarity=0.388 Sum_probs=190.3
Q ss_pred cccccCCCCcccccCCCCce---eeeCC-CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCC
Q 010754 181 LQGEKGPEPMDIATTSASES---FEIPN-SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNG 256 (502)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~ 256 (502)
....-.|.....++++.+.. |++.. .....+.||+++|+|+.|+.+|.+||||..+|.|+||+..++.....+
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~--- 144 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL--- 144 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe---
Confidence 33334444444555555543 33333 246778999999999999999999999999999999999987632111
Q ss_pred CceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEec
Q 010754 257 PLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 335 (502)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~ 335 (502)
...-..+.-|.|+|.+..|+.|+.||.+-+|.+.. ...+.+.+|..++++=+|.|+|+.++++..
T Consensus 145 --------------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 145 --------------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred --------------ecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec
Confidence 12245688999999999999999999999999876 788899999999999999999999999999
Q ss_pred CCeEEEEEcCCCceEEEEee------------------------------------------------------------
Q 010754 336 DKTAIVWDVKTEEWKQQFEF------------------------------------------------------------ 355 (502)
Q Consensus 336 d~~i~~wd~~~~~~~~~~~~------------------------------------------------------------ 355 (502)
||+|++||..+++++..+..
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999998876654431
Q ss_pred -----------------------------------ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCc
Q 010754 356 -----------------------------------HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400 (502)
Q Consensus 356 -----------------------------------~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~ 400 (502)
|..+|..+.|.+...+++++.+|.|++||.++|+.+.++.||...
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchh
Confidence 112356666767677899999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
|.+++++|+.++++|+|.|++.+|+++.
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=237.20 Aligned_cols=242 Identities=20% Similarity=0.336 Sum_probs=214.0
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+...+..|..++|+|...+++++-..|.|++||..=+. +...+..|.++|..++|+|++.+++
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-----------------li~rFdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-----------------LIDRFDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhh-----------------HHhhhhccCCccceeeecCCCCeEE
Confidence 44456788999999999999999999999999977544 4455677899999999999999999
Q ss_pred EEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-C
Q 010754 291 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 368 (502)
Q Consensus 291 s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~ 368 (502)
+|+.|-.|+||+.. .++..++.+|-.-|..+.|++.-.+|+++|.|-+|+||+..+++++..+.+|..-|+|..|+| +
T Consensus 68 SGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred ecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 99999999999976 467789999999999999999999999999999999999999999999999999999999998 7
Q ss_pred CEEEEEeCCCeEEEEEcCCCc-----------------------------ceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 369 VSFATSSTDNMIYVCKIGENR-----------------------------PIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~-----------------------------~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
..+++++-|.+|++||+..-+ .-..+.||...|+-++|+|.-.+|+||++|
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DD 227 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADD 227 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCc
Confidence 789999999999999985310 113567999999999999999999999999
Q ss_pred CcEEEEECCCCe--eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 420 VTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 420 g~i~iwd~~~~~--~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..|++|.+...+ .+-+.++|..+|.++-|+|... .++..|.|+.+++|+.
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-------lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-------LILSNSEDKSIRVWDM 279 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccc-------eeEecCCCccEEEEec
Confidence 999999987544 3456779999999999999876 6788888999999963
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=199.78 Aligned_cols=255 Identities=21% Similarity=0.350 Sum_probs=214.7
Q ss_pred ccCCCCceeeeCCC----ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecC
Q 010754 193 ATTSASESFEIPNS----DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268 (502)
Q Consensus 193 ~~~~~~~~~~~~~~----~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (502)
.+.+.+..+++++. .++++.||...|..++.+.|...|++|+.|..+.+||+.+++.. .
T Consensus 33 ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~-----------------R 95 (307)
T KOG0316|consen 33 LTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVD-----------------R 95 (307)
T ss_pred EEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeee-----------------e
Confidence 34555666777654 47889999999999999999999999999999999999998743 3
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC---ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC
Q 010754 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345 (502)
Q Consensus 269 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~ 345 (502)
.+.+|...|+.+.|+.+...+++|+.|..+++||-+. .+++.+......|.++..+ +..|++|+.||+++.||++
T Consensus 96 r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR 173 (307)
T KOG0316|consen 96 RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIR 173 (307)
T ss_pred ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEee
Confidence 4456778899999999999999999999999999653 5677888888999999886 5789999999999999999
Q ss_pred CCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEE--EEEEcCCCCEEEEEeCCCcE
Q 010754 346 TEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVN--CVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 346 ~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~--~l~~sp~g~~las~s~dg~i 422 (502)
.|....-+. ..+|++++|+++.. .++++.|+++++.|-.+++.++.++||.+.-. ..+++.....+++||+||.|
T Consensus 174 ~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~V 251 (307)
T KOG0316|consen 174 KGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKV 251 (307)
T ss_pred cceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceE
Confidence 998765554 45799999987655 67888999999999999999999999976533 45677778899999999999
Q ss_pred EEEECCCCeeEEEeccCCCc-EEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 423 KIWNMKQDKYVHDLREHSKE-IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~-i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++||+.....+..+..++.. |.+++++|.-. .+++|...+ ..+|-.
T Consensus 252 y~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~-------~f~~A~~~~-~~~~~~ 298 (307)
T KOG0316|consen 252 YFWDLVDETQISKLSVVSTVIVTDLSCHPTMD-------DFITATGHG-DLFWYQ 298 (307)
T ss_pred EEEEeccceeeeeeccCCceeEEeeecccCcc-------ceeEecCCc-eeceee
Confidence 99999999999999988888 89999999876 666665444 555543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=230.04 Aligned_cols=251 Identities=14% Similarity=0.163 Sum_probs=195.9
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCC-CCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ-NGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATG 292 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~ 292 (502)
-..|.....++++..+++++.+..+..|+...+..+.... .+.. ........+|...|++++|+| ++++|++|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~-----~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKL-----ASNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccC-----CCCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 3556667777787778888888888899876543211000 0000 000112356889999999999 88999999
Q ss_pred ECCCeEEEEECCC--------ceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 293 SYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 293 ~~dg~i~iwd~~~--------~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
+.||.|++||+.. ..+..+.+|...|.+++|+|++ ++|++++.|++|++||+.+++.+..+..|...|.++
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 9999999999753 2456788999999999999975 699999999999999999999999999999999999
Q ss_pred EecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCc-EEEEEEcCCCCEEEEEe----CCCcEEEEECCCCe-eEEEe
Q 010754 364 DWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGSLLASCS----DDVTAKIWNMKQDK-YVHDL 436 (502)
Q Consensus 364 ~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~-i~~l~~sp~g~~las~s----~dg~i~iwd~~~~~-~~~~~ 436 (502)
+|++++ .|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..|++++ .|+.|++||+++.. ++...
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 998765 5889999999999999999999999999765 45778999888877654 47899999998754 44443
Q ss_pred ccC-CCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEee
Q 010754 437 REH-SKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWICS 477 (502)
Q Consensus 437 ~~h-~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~~ 477 (502)
..+ ...+....|+|++. .+++++ +|+.+++|...
T Consensus 255 ~~d~~~~~~~~~~d~d~~-------~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTN-------LLYIGSKGEGNIRCFELM 290 (493)
T ss_pred ccCCCCceEEEEEcCCCC-------EEEEEEeCCCeEEEEEee
Confidence 333 34566778999987 667776 48999999753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=202.70 Aligned_cols=238 Identities=19% Similarity=0.348 Sum_probs=195.0
Q ss_pred EEEEEcCC-CCeEEEEe-------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-CCEE
Q 010754 219 CACAWSPA-GSLLASGS-------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLL 289 (502)
Q Consensus 219 ~~~~~~p~-~~~l~sgs-------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l 289 (502)
.++.|||- .++||.+. ..|++.|-++...+.+. ....+ .-...+..++|+++ .+.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~----------e~~s~-----d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ----------ECQSY-----DTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE----------EEEee-----ecccceeEeeecCCCcceE
Confidence 57889993 44444432 46889998886433211 11111 12456999999985 4688
Q ss_pred EEEECCCeEEEEECC--CceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 290 ATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
++++.||.++|||+. ...+..++.|...|.++.|++ ++..+++++.|++|++|+......+++|.+|...|....|+
T Consensus 77 ~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~s 156 (311)
T KOG0277|consen 77 IAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFS 156 (311)
T ss_pred EEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecC
Confidence 899999999999954 567888999999999999998 45678888999999999999999999999999999999997
Q ss_pred C--CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eeEEEeccCCCc
Q 010754 367 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKE 442 (502)
Q Consensus 367 ~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp-~g~~las~s~dg~i~iwd~~~~-~~~~~~~~h~~~ 442 (502)
| .+.|++++.|+++++||++.......+..|...|.++.|+. +.++|+||+.|+.||+||+++- .++..+.+|.-.
T Consensus 157 p~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A 236 (311)
T KOG0277|consen 157 PHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA 236 (311)
T ss_pred CCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence 7 57799999999999999987655556999999999999997 5678999999999999999875 467888999999
Q ss_pred EEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 443 IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 443 i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|..|+|||... ..|.+||.|++++||+..
T Consensus 237 VRkvk~Sph~~------~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 237 VRKVKFSPHHA------SLLASASYDMTVRIWDPE 265 (311)
T ss_pred EEEEecCcchh------hHhhhccccceEEecccc
Confidence 99999999875 356788889999999754
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=236.44 Aligned_cols=263 Identities=25% Similarity=0.389 Sum_probs=211.6
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCC--ccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT--SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
+..+.+...|.+.|.|+.|+|||++||+||.|+.|.||...... ......++..++...+ ......+|...|..++|
T Consensus 59 ~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk-~~~~l~~H~~DV~Dv~W 137 (942)
T KOG0973|consen 59 PKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWK-VVSILRGHDSDVLDVNW 137 (942)
T ss_pred chhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceee-EEEEEecCCCccceecc
Confidence 34567788999999999999999999999999999999988411 1111111111221111 22334458999999999
Q ss_pred CCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc----
Q 010754 283 NGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---- 357 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---- 357 (502)
+|++.+|++++.|+.|.||+.. ......+.+|.+.|..+.|.|-|+||++-+.|++|++|++.+..+.+.+..+-
T Consensus 138 sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 138 SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999965 46777899999999999999999999999999999999987776766665432
Q ss_pred --CCeEEEEecCCCEEEEE-----eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC-------------CC----EE
Q 010754 358 --GPTLDVDWRNNVSFATS-----STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-------------GS----LL 413 (502)
Q Consensus 358 --~~v~~v~~~~~~~~~~~-----~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~-------------g~----~l 413 (502)
.-...+.|+|++.+++. +...++.|.+-.+.+.-..|-||.+++.+++|+|. +. .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 24788999998876544 33457888888888888899999999999999981 11 68
Q ss_pred EEEeCCCcEEEEECCCCeeEEEec-cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 414 ASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
|+||.|++|.||.....+++..+. -....|.+++|+|||. .|+.+|.|+++.+..
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~-------~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF-------SLFACSLDGTVALIH 353 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC-------eEEEEecCCeEEEEE
Confidence 899999999999998888776554 3467899999999998 889999999988874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=216.84 Aligned_cols=240 Identities=18% Similarity=0.271 Sum_probs=201.1
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-CC
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GT 287 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~ 287 (502)
+++.-..+.|++++|..||++||+|...|.|+|+|+.+. ........|..+|..+.|+|+ +.
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-----------------~iLR~~~ah~apv~~~~f~~~d~t 124 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-----------------VILRQLYAHQAPVHVTKFSPQDNT 124 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-----------------HHHHHHhhccCceeEEEecccCCe
Confidence 334456688999999999999999999999999995542 133445677889999999995 56
Q ss_pred EEEEEECCCeEEEEECCCceEE-EecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEE
Q 010754 288 LLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~ 364 (502)
.+++|+.|+.+++||+.+..+. .+.+|+..|.|.+|+|.. ..++||+.||.|++||+++. ..+..+. |..+|-.+.
T Consensus 125 ~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl 203 (487)
T KOG0310|consen 125 MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVL 203 (487)
T ss_pred EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEE
Confidence 7888889999999999876554 788999999999999954 58889999999999999987 4555554 888999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcE
Q 010754 365 WRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443 (502)
Q Consensus 365 ~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i 443 (502)
+.|++.+++......|++||+.+| +.+..+..|...|+|+++..++..|+||+-|+.|++||+.+.+.++.+. ..++|
T Consensus 204 ~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pv 282 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPV 282 (487)
T ss_pred EcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccce
Confidence 988866666667789999999955 4455555599999999999999999999999999999999999999887 67899
Q ss_pred EEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 444 YTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 444 ~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
.+++.+|+++ .+++|-++|.+.+.
T Consensus 283 Lsiavs~dd~-------t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 283 LSIAVSPDDQ-------TVVIGMSNGLVSIR 306 (487)
T ss_pred eeEEecCCCc-------eEEEecccceeeee
Confidence 9999999887 67777777766655
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-26 Score=189.00 Aligned_cols=254 Identities=24% Similarity=0.322 Sum_probs=204.4
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
..+..|.+++|+|.|.+.|.|+...+.+|-....-............ ...........|.+.|.|.+|+|+|.+|++|
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~--pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ--PPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC--CCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 34567999999999999999999999998765542211111111100 0011222345678899999999999999999
Q ss_pred ECCCeEEEEECCCc------eEEEecCccCCeEEEEEecC----CCEEEEEe-cCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 293 SYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKK----GDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 293 ~~dg~i~iwd~~~~------~~~~~~~~~~~v~~l~~~~~----~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
+.|..|++..++.. .-..+.-|.+.|..++|..+ +..|++++ .|..|++-|..+|+..+.+.+|.+-|.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 99999999876532 33467789999999999643 35666654 477899999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEec--C-----CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--H-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--h-----~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
++---.+-.|++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|++|++|-.|....+||++.++.++
T Consensus 188 alyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 188 ALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred EEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 88666677899999999999999999988877642 2 2569999999999999999999999999999999999
Q ss_pred EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 435 ~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.+..|+..|.++.|||... +++++|.|+.+++-+
T Consensus 268 ~f~phsadir~vrfsp~a~-------yllt~syd~~ikltd 301 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAH-------YLLTCSYDMKIKLTD 301 (350)
T ss_pred eeCCCccceeEEEeCCCce-------EEEEecccceEEEee
Confidence 9999999999999999876 889999998888764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=200.31 Aligned_cols=259 Identities=16% Similarity=0.261 Sum_probs=207.0
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCC--ceeEEE-----------------------
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP--LNVLVL----------------------- 263 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~----------------------- 263 (502)
+.+..-.+.|.++.|+++|.+|++++.|.+++|||..+++....+.... .....+
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 3444456889999999999999999999999999999887655433221 111000
Q ss_pred --eeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEE-EecCccCCeEEEEEecCCCEEEEEecCCeEE
Q 010754 264 --KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340 (502)
Q Consensus 264 --~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~ 340 (502)
.....-+.+|...|++++.+|-+..+++++.|++|++||++..... .+.... -..++|.|.|-++|++.....|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEE
Confidence 1123445689999999999999999999999999999998843333 332222 24568999999999998888999
Q ss_pred EEEcCCC--ceEEEEeec---cCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcE---EEEEEcCCCC
Q 010754 341 VWDVKTE--EWKQQFEFH---SGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEV---NCVKWDPTGS 411 (502)
Q Consensus 341 ~wd~~~~--~~~~~~~~~---~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i---~~l~~sp~g~ 411 (502)
+||++.- .+..++... ......+.|++++. ++.+...+.+++.|.-.|..+.++.++...- ...+|+|+++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 9999864 345555444 55688999988776 6677788889999999999999998875432 5678999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecc-CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 412 LLASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 412 ~las~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
++++|+.||+|.+|++++++.+..+.+ +.+++.++.|+|.-. +.++++..+.+|....
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~---------mf~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYA---------MFVSASSNLVFWLPDE 304 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCcee---------eeeecCceEEEEeccc
Confidence 999999999999999999999999998 789999999999865 9999999999998653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=202.00 Aligned_cols=223 Identities=25% Similarity=0.428 Sum_probs=184.2
Q ss_pred CCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCC-CccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 215 TSEVCACAWSP-AGSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 215 ~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.+.|.+++||| ...+++.||.|++||+|+++.. ... ......|.++|.+++|+.+|..+++|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------~ka~~~~~~PvL~v~WsddgskVf~g 90 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------PKAQQSHDGPVLDVCWSDDGSKVFSG 90 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCccc----------------chhhhccCCCeEEEEEccCCceEEee
Confidence 47799999999 5677889999999999999874 221 12234567899999999999999999
Q ss_pred ECCCeEEEEECCCceEEEecCccCCeEEEEEecCCC--EEEEEecCCeEEEEEcCCCceEEEEeecc-------------
Q 010754 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD--YLLTGSCDKTAIVWDVKTEEWKQQFEFHS------------- 357 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------------- 357 (502)
+.|+.+++||+.......+..|.++|.++.|-+... .|+|||.|++|+.||++...++.++....
T Consensus 91 ~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~v 170 (347)
T KOG0647|consen 91 GCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAV 170 (347)
T ss_pred ccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeE
Confidence 999999999999889999999999999999988665 89999999999999999877655543211
Q ss_pred ----------------------------CCeEEEEe-cCCCEEEEEeCCCeEEEEEcCCC--cceEEEecCCC-------
Q 010754 358 ----------------------------GPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN--RPIKTFAGHQG------- 399 (502)
Q Consensus 358 ----------------------------~~v~~v~~-~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~h~~------- 399 (502)
-.+.+|+. .+...++.|+.+|++.|..+..+ +.-.+|+.|..
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 12344443 44555788999999988888776 44456677752
Q ss_pred --cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 400 --EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 400 --~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.|++|+|+|....|++++.||++.+||-.....+.....|..+|++.+|+.+|+
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 478899999999999999999999999888888888889999999999999998
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=233.20 Aligned_cols=238 Identities=24% Similarity=0.407 Sum_probs=209.1
Q ss_pred ceEE-eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTI-LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~-l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+.. +.||.+.|.++++..-+.+|++|+.|.++++||+.++.+.. ...+|...|.++...
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-----------------~l~gh~stv~~~~~~-- 300 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-----------------SLQGHTSSVRCLTID-- 300 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-----------------EecCCCceEEEEEcc--
Confidence 3555 89999999999998878899999999999999999987543 223566778888764
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
...+++|+.|.+|++|+++ +..+..+.+|.++|.++..+ +.++++|+.|++|++||+.+++++..+.+|...|.++.
T Consensus 301 ~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~ 378 (537)
T KOG0274|consen 301 PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLI 378 (537)
T ss_pred CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEE
Confidence 4578889999999999988 56666677799999999987 78999999999999999999999999999999999998
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-CCCc
Q 010754 365 WRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSKE 442 (502)
Q Consensus 365 ~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~-h~~~ 442 (502)
+.+...+++|+.|++|++||+++. +++.++.+|..-+..+.+ .+++|++++.||+|++||..++++++.+.+ |...
T Consensus 379 ~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~ 456 (537)
T KOG0274|consen 379 VDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGG 456 (537)
T ss_pred ecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCccc
Confidence 877688999999999999999999 999999999998877665 478999999999999999999999999998 6788
Q ss_pred EEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 443 IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 443 i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+.+++. ...++.++.++.+++|+.
T Consensus 457 v~~l~~~---------~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 457 VSALALG---------KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred EEEeecC---------cceEEEEecCCeeEEEec
Confidence 9999887 125788888999999964
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-28 Score=214.69 Aligned_cols=244 Identities=20% Similarity=0.305 Sum_probs=193.9
Q ss_pred CceEEeccCCCceEEEEEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 206 SDVTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
..+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+.. .+..|.+.|..|++..
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-----------------~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-----------------TFKAHEGLVRGICVTQ 119 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-----------------eeecccCceeeEEecc
Confidence 3567789999999999999976 889999999999999998765432 3344566788888766
Q ss_pred CCCEEEEEECCCeEEEEECCCce---------------------------------------EEEecCccCCeEEEEEec
Q 010754 285 EGTLLATGSYDGQARIWSTNGDL---------------------------------------KCTLSKHKGPIFSLKWNK 325 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~---------------------------------------~~~~~~~~~~v~~l~~~~ 325 (502)
..+++++.|.+|+.|..++.. +..+.-....|.+++|+|
T Consensus 120 --~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNp 197 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNP 197 (433)
T ss_pred --cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCC
Confidence 567777778888888644322 222222344578888898
Q ss_pred CC-CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCC-cceEEEecCCCcEE
Q 010754 326 KG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVN 402 (502)
Q Consensus 326 ~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~ 402 (502)
.. ..|++|+.|++|.+||++++.+++.+.. ......|+|.|+.. |+++..|..++.||++.- .++..+.+|.+.|.
T Consensus 198 vETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~ 276 (433)
T KOG0268|consen 198 VETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVM 276 (433)
T ss_pred CcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEE
Confidence 66 4566777999999999999998887653 34567899998544 889999999999999875 58899999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 403 CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 403 ~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+.|||.|+-+++||.|.+|+||.++.+..--.+. .--..|.++.||.|.. +++.||.++.+++|-.
T Consensus 277 dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk-------yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 277 DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK-------YIISGSDDGNVRLWKA 344 (433)
T ss_pred EeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc-------EEEecCCCcceeeeec
Confidence 99999999999999999999999998776433321 1124599999999988 8999999999999953
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=199.73 Aligned_cols=249 Identities=24% Similarity=0.372 Sum_probs=199.8
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CCC
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGT 287 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~ 287 (502)
+-.+|.+.|..+...-.|++|||++.|++|||+.+.+.... .+.....+|.++|..++|.. -|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s--------------~ll~~L~Gh~GPVwqv~wahPk~G~ 71 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS--------------KLLAELTGHSGPVWKVAWAHPKFGT 71 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc--------------eeeeEecCCCCCeeEEeecccccCc
Confidence 44679999999998888999999999999999999875421 13345567899999999976 899
Q ss_pred EEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCC-c--eEEEEeeccCC
Q 010754 288 LLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTE-E--WKQQFEFHSGP 359 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~-~--~~~~~~~~~~~ 359 (502)
+||++++||.|.||.-.+. .......|...|++++|.|. |-.|++++.||.|.+.+.+.. . ..+....|.-.
T Consensus 72 iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 72 ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence 9999999999999997654 33456679999999999985 468889999999999988654 2 23445678889
Q ss_pred eEEEEecCC---------------CEEEEEeCCCeEEEEEcCCCc--ceEEEecCCCcEEEEEEcCCC----CEEEEEeC
Q 010754 360 TLDVDWRNN---------------VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTG----SLLASCSD 418 (502)
Q Consensus 360 v~~v~~~~~---------------~~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~i~~l~~sp~g----~~las~s~ 418 (502)
|.+++|.|. .+|++|+.|+.|.||+..++. .-.+|.+|.+.|..++|.|.- .+||+||.
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 999999764 359999999999999998863 345689999999999999964 47999999
Q ss_pred CCcEEEEECCCCe---eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeE
Q 010754 419 DVTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIY 479 (502)
Q Consensus 419 dg~i~iwd~~~~~---~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~ 479 (502)
||++.||-.+... ....+......++.+.||+.|. .|.++.+|+.+++|.-++.
T Consensus 232 Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-------~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 232 DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-------ILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred CCcEEEEEecCccCcccccccccCCcceEEEEEecccc-------EEEEecCCcEEEEEEeCCC
Confidence 9999999865221 1122334556799999999998 5666677788888875543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=207.57 Aligned_cols=240 Identities=23% Similarity=0.368 Sum_probs=200.7
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC---CEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG---TLL 289 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g---~~l 289 (502)
-|.+-|.++.-. +..+++|+.||.+++|+..... .....+|.++|.+++|.-.. ..+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~------------------~~~~~Ght~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS------------------IKTIVGHTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecCCce------------------EEEEecCCcceeeeEEEecCCccceE
Confidence 477888888776 7899999999999999976532 12234667889988885433 369
Q ss_pred EEEECCCeEEEEECCCc-----eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC-------------------
Q 010754 290 ATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK------------------- 345 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~------------------- 345 (502)
++++.|.++++|-.+.. ......+|...|-++...++|..+++|+.|.+|.+|+..
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 99999999999986532 222334999999999999999999999999999999832
Q ss_pred ------CCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 346 ------TEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 346 ------~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
++.++..+.+|..+|.++.|.+...+++++.|.+|+.||+.++..+.++.+ ...++++.++|..++||+||.|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssd 321 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSD 321 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCC
Confidence 123566788999999999999999999999999999999999999888874 5679999999999999999999
Q ss_pred CcEEEEECCCCe---eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeE
Q 010754 420 VTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIY 479 (502)
Q Consensus 420 g~i~iwd~~~~~---~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~ 479 (502)
..|++||.+++. ..+.+.+|...|.++.|+|... .+++.+|.|+.+++|++.-.
T Consensus 322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~------~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE------FQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred CceeecCCCCCCCceeEEeeecchhhhhheecCCCCc------eEEEEEecCCeEEEEEeccC
Confidence 999999998753 3467889999999999999876 46788999999999986543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=195.95 Aligned_cols=225 Identities=20% Similarity=0.363 Sum_probs=199.8
Q ss_pred EeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 210 ILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..+||.+.|-.++|+|. ..+|++++.|.+|++||+..+++...... ...-.-+.|+|+|.+
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~------------------~~eni~i~wsp~g~~ 120 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET------------------KGENINITWSPDGEY 120 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec------------------cCcceEEEEcCCCCE
Confidence 45799999999999994 68999999999999999998875321111 233456789999999
Q ss_pred EEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC
Q 010754 289 LATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~ 368 (502)
+++++.|..|.+.|.+.............+..++|+.+++.|+.....|+|.|......++++.+..|...+.+|.|.|.
T Consensus 121 ~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~ 200 (313)
T KOG1407|consen 121 IAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD 200 (313)
T ss_pred EEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCC
Confidence 99999999999999887766666667778899999988888887777899999999999999999999999999999886
Q ss_pred C-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEE
Q 010754 369 V-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (502)
Q Consensus 369 ~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~ 447 (502)
+ .|++|+.|..+.+||+..--+++.+..+.-+|..|.||.+|++||+||+|..|-|=++.+|..+..++ +.++-.+|+
T Consensus 201 GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVA 279 (313)
T KOG1407|consen 201 GRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVA 279 (313)
T ss_pred CceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEE
Confidence 5 59999999999999999999999999999999999999999999999999999999999999999997 888999999
Q ss_pred EccCCC
Q 010754 448 WSPTGS 453 (502)
Q Consensus 448 ~sp~g~ 453 (502)
|+|...
T Consensus 280 WHPk~~ 285 (313)
T KOG1407|consen 280 WHPKRP 285 (313)
T ss_pred ecCCCc
Confidence 999977
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=207.51 Aligned_cols=237 Identities=21% Similarity=0.367 Sum_probs=206.1
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
...|+++...|..+.++||+.|.++.++|.+.++.. ..+.+|...|+.+.++|+...+++++.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-----------------~~~~Gh~kki~~v~~~~~~~~v~~aSa 281 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-----------------ATLKGHTKKITSVKFHKDLDTVITASA 281 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh-----------------hhccCcceEEEEEEeccchhheeecCC
Confidence 356888888888789999999999999998876633 344567788999999999999999999
Q ss_pred CCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec--cCCeEEEEecCCCE-
Q 010754 295 DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGPTLDVDWRNNVS- 370 (502)
Q Consensus 295 dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~v~~~~~~~- 370 (502)
|..|+||... .........|..+|+.+..+|.|.||++++.|+++.+.|++++.++...... .-.+++..|+|++.
T Consensus 282 d~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLi 361 (506)
T KOG0289|consen 282 DEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLI 361 (506)
T ss_pred cceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceE
Confidence 9999999964 4556677889999999999999999999999999999999999988776643 23588999998876
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-CCCcEEEEEEc
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWS 449 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~v~~s 449 (502)
|.+|..|+.++|||+.+...+..|.+|+++|..|+|+.+|.|||++++|+.|++||++..+.+.++.. ...++.++.|.
T Consensus 362 fgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred EeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence 77889999999999999999999999999999999999999999999999999999999888777763 33479999999
Q ss_pred cCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 450 PTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 450 p~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+.|. +++.+..+++++++.
T Consensus 442 ~SGt---------~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 442 QSGT---------YLGIAGSDLQVYICK 460 (506)
T ss_pred CCCC---------eEEeecceeEEEEEe
Confidence 9999 666667788888765
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-27 Score=214.15 Aligned_cols=206 Identities=25% Similarity=0.457 Sum_probs=165.0
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
.+++.||..+|.-+.||||.++|++|+.|..+++||+.++........ ++...+.+++|.|||.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~----------------~~~~S~~sc~W~pDg~ 325 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS----------------GLGFSVSSCAWCPDGF 325 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc----------------CcCCCcceeEEccCCc
Confidence 678899999999999999999999999999999999999875432211 1245689999999999
Q ss_pred EEEEEECCCeEEEEECCCceEEEecC------------------------------------------ccCCeEEEEEec
Q 010754 288 LLATGSYDGQARIWSTNGDLKCTLSK------------------------------------------HKGPIFSLKWNK 325 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------------------~~~~v~~l~~~~ 325 (502)
.+++|+.|+.|..||+++.......+ ...+|++++.+.
T Consensus 326 ~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~ 405 (519)
T KOG0293|consen 326 RFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISK 405 (519)
T ss_pred eeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcC
Confidence 99999999999999987643222221 234566777777
Q ss_pred CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC--eEEEEec--CCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcE
Q 010754 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP--TLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401 (502)
Q Consensus 326 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--v~~v~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i 401 (502)
+++++++.-.+..+.+||+.....++.+.+|... +..-||. ++..+++|+.|+.|+||+..+++++..+.||...|
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v 485 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV 485 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee
Confidence 7777777767777777777777777777777654 4444553 34568899999999999999999999999999999
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 010754 402 NCVKWDPTG-SLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 402 ~~l~~sp~g-~~las~s~dg~i~iwd~~~ 429 (502)
+|++|+|.. .++||+|+||+||||....
T Consensus 486 NcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 486 NCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999964 5799999999999998653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-25 Score=185.91 Aligned_cols=249 Identities=25% Similarity=0.407 Sum_probs=198.7
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC---
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--- 284 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--- 284 (502)
.+.-+.|.++|+|.+|+|+|.+||+|+.|.+|++..+....+.... ....+.-|.+.|..++|-.
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g------------~dle~nmhdgtirdl~fld~~~ 149 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG------------HDLEFNMHDGTIRDLAFLDDPE 149 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccC------------cceeeeecCCceeeeEEecCCC
Confidence 3445679999999999999999999999999999887765432211 1123344678899999954
Q ss_pred -CCCEEEEEEC-CCeEEEEEC-CCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee--c---
Q 010754 285 -EGTLLATGSY-DGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--H--- 356 (502)
Q Consensus 285 -~g~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~--- 356 (502)
.|.+|++++. |..|++-|. ++.....+.+|.+-|.++- +-++-.|++|+.|.+|++||++-..++.++.. |
T Consensus 150 s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 150 SGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred cCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 3557777653 445555553 3677888999999998873 44678999999999999999999888887643 2
Q ss_pred --cCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Q 010754 357 --SGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--- 430 (502)
Q Consensus 357 --~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~--- 430 (502)
...|.+++..|.++ +++|-.|....+||++.+++++.|..|...|.|+.|+|...|+++|+.|..|++=|+...
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~ 308 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH 308 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh
Confidence 34688888877655 677888999999999999999999999999999999999999999999999999998632
Q ss_pred -eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 431 -KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 431 -~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
-.+.....|...+..+.|+|..- .++..|+|.+..+|-.
T Consensus 309 el~~~vv~ehkdk~i~~rwh~~d~-------sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 309 ELPIMVVAEHKDKAIQCRWHPQDF-------SFISSSADKTATLWAL 348 (350)
T ss_pred cCceEEEEeccCceEEEEecCccc-------eeeeccCcceEEEecc
Confidence 12334447888999999999875 6788899999999964
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=218.84 Aligned_cols=253 Identities=19% Similarity=0.329 Sum_probs=216.8
Q ss_pred cccCCCCceeeeCCCc------eEEeccCCCceEE-EEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEE
Q 010754 192 IATTSASESFEIPNSD------VTILEGHTSEVCA-CAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL 263 (502)
Q Consensus 192 ~~~~~~~~~~~~~~~~------~~~l~~H~~~V~~-~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 263 (502)
+...+.++.+.++.+. .+.+.+|.+-|.+ +++-+ ++-.|++|+.|.++.+|.+.....
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P-------------- 93 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEP-------------- 93 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCc--------------
Confidence 3444555556655443 3556778888887 88886 455799999999999999887552
Q ss_pred eeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 264 KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 264 ~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
.....+|...|.+++...++. +++|+.|.++++|.. +.+...+.+|...|++++.-|.+ .++|||.|++|++|.
T Consensus 94 ---~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~-~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 94 ---LYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI-GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWK 167 (745)
T ss_pred ---hhhhhccccceeeeecCCcCc-eEecccccceEEecc-hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeecc
Confidence 334567788999999888887 999999999999964 55666799999999999999987 899999999999996
Q ss_pred cCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~ 423 (502)
.++.+++|.+|.+.|..++..++..|++|+.||.|+.|++ ++..+..+.||+..|.++...+++..++|+++|++++
T Consensus 168 --~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlr 244 (745)
T KOG0301|consen 168 --GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLR 244 (745)
T ss_pred --CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEE
Confidence 4888999999999999999999999999999999999999 7888999999999999999888899999999999999
Q ss_pred EEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
||+.. .+.+.+.-.+..|+++.+-++|. +++|++||.++||..+
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD--------Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD--------IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC--------EEEeccCceEEEEEec
Confidence 99876 88888886666899999999986 8999999999999644
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=220.11 Aligned_cols=221 Identities=17% Similarity=0.269 Sum_probs=170.4
Q ss_pred EeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-CCEEEEEECCCeEEEEECCCc-----
Q 010754 233 GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNGD----- 306 (502)
Q Consensus 233 gs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~s~~~dg~i~iwd~~~~----- 306 (502)
|+.++.|++|+..... ......+|...|.+++|+|+ +.+|++|+.||.|+|||+...
T Consensus 50 GG~~gvI~L~~~~r~~-----------------~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~ 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP-----------------PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK 112 (568)
T ss_pred CCceeEEEeeecCCCc-----------------eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc
Confidence 5667888888865432 11223467889999999996 789999999999999997531
Q ss_pred ----eEEEecCccCCeEEEEEecCCCEE-EEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeE
Q 010754 307 ----LKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMI 380 (502)
Q Consensus 307 ----~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i 380 (502)
....+.+|...|.+++|+|++..+ ++++.|++|++||+++++....+. +...|.+++|++++. |++++.|+.|
T Consensus 113 ~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~I 191 (568)
T PTZ00420 113 EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHM 191 (568)
T ss_pred ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEE
Confidence 234678899999999999988764 688999999999999998777765 567899999987654 6667789999
Q ss_pred EEEEcCCCcceEEEecCCCcEEE-----EEEcCCCCEEEEEeCCC----cEEEEECCC-CeeEEEec--cCCCcEEEEEE
Q 010754 381 YVCKIGENRPIKTFAGHQGEVNC-----VKWDPTGSLLASCSDDV----TAKIWNMKQ-DKYVHDLR--EHSKEIYTIRW 448 (502)
Q Consensus 381 ~i~d~~~~~~~~~~~~h~~~i~~-----l~~sp~g~~las~s~dg----~i~iwd~~~-~~~~~~~~--~h~~~i~~v~~ 448 (502)
++||++++..+.++.+|.+.+.+ ..|++++.+|++++.|+ .|+|||+++ ++++..+. .+.+.+.....
T Consensus 192 rIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D 271 (568)
T PTZ00420 192 HIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYD 271 (568)
T ss_pred EEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeee
Confidence 99999999999999999876543 33568999999988774 799999985 56665554 23333334444
Q ss_pred ccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 449 SPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
.++|. .+++|++|+.+++|.+..
T Consensus 272 ~~tg~-------l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 272 ESTGL-------IYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCCCC-------EEEEEECCCeEEEEEccC
Confidence 44455 667788899999998643
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=196.28 Aligned_cols=245 Identities=20% Similarity=0.298 Sum_probs=200.2
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.++..+..|.++|++++.+ +.++|+||.|-+|+|||+.+..... ....|.+.|+++.|.+.
T Consensus 34 ~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg-----------------~ll~HagsitaL~F~~~ 94 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG-----------------ILLSHAGSITALKFYPP 94 (362)
T ss_pred eccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc-----------------ceeccccceEEEEecCC
Confidence 3456778999999999985 8999999999999999998865432 22345788999999987
Q ss_pred CC--EEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 286 GT--LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 286 g~--~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
-. .|++|+.||.|.+|+... .++..+.+|.+.|+.++.+|.++.-++.+.|+.+++||+-+|+.-........ ...
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~ 173 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATL 173 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCc-cee
Confidence 65 899999999999999875 66778999999999999999999999999999999999988876554443322 334
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCc
Q 010754 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (502)
Q Consensus 363 v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~ 442 (502)
+.|.+.+..++.+....|-+|.+.+......+. ....+.++.|- ++..|++|.+|+.|++||.....+...+.+|...
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~R 251 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENR 251 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhh
Confidence 899887664444455678899998877665554 22557777776 6778999999999999999999999999999999
Q ss_pred EEEEEEc--cCCCCCCCCCccEEEEeecCceEEEEeeeE
Q 010754 443 IYTIRWS--PTGSGTNNPNQQLILARLIPYFLYWICSIY 479 (502)
Q Consensus 443 i~~v~~s--p~g~~~~~~~~~l~las~~~~~~iw~~~~~ 479 (502)
|.++.+- |++. +|+++|+||.+++|..++.
T Consensus 252 VK~i~~~~~~~~~-------~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 252 VKDIASYTNPEHE-------YLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeeEEEecCCce-------EEEEeccCceEEEEEcccc
Confidence 9999854 4444 8999999999999987654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=208.13 Aligned_cols=257 Identities=21% Similarity=0.375 Sum_probs=203.8
Q ss_pred eEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
+...--|.+.|+.+.+.|. ..++|+++..+.|.|||..+-.......... .+.....+|.+.-++|+|++..
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~-------~Pdl~L~gH~~eg~glsWn~~~ 189 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGEC-------RPDLRLKGHEKEGYGLSWNRQQ 189 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccC-------CCceEEEeeccccccccccccc
Confidence 3444579999999999995 6788889999999999987654322211110 1112233455567889999954
Q ss_pred -CEEEEEECCCeEEEEECCC--------ceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcC--CCceEEEEe
Q 010754 287 -TLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK--TEEWKQQFE 354 (502)
Q Consensus 287 -~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~--~~~~~~~~~ 354 (502)
-.|++|+.|+.|++||++. .....+.+|...|..++|++.. ..|.+++.|+.+.|||+| +.++.+...
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 4789999999999999763 2345788999999999999954 678899999999999999 566777788
Q ss_pred eccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 010754 355 FHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 355 ~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~ 430 (502)
.|.+.+.++.|.| +..||+|+.|++|.+||+|+- +++.++.+|...|.+|.|+|. ...|||++.|+.+.|||+..-
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 8999999999976 556899999999999999975 578999999999999999997 467899999999999998542
Q ss_pred --------------eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 431 --------------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 431 --------------~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+++....||...|..+.|+|..+ -.+..++.|+.+.||..+
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP------W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP------WTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCC------eEEEEecCCceEEEeecc
Confidence 23456669999999999999987 123444556778999764
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=221.84 Aligned_cols=217 Identities=25% Similarity=0.423 Sum_probs=187.0
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+-++++|.+.|+.++.+||+..++|||.|.+|++|++.-..... .....++.+. ......-...|.|+++||||+
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~---gt~~k~lsl~--~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP---GTQKKVLSLK--HTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccC---cccceeeeec--cceEEeccccEEEEEEcCCCc
Confidence 34567999999999999999999999999999999975322111 1111111111 112223356899999999999
Q ss_pred EEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
+|+++--|.+|+||-++. +...++.+|.-||.||..+|+++.++|||.|++|++|-+.-|.|.+.+..|...|+++.|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 999999999999999886 5667899999999999999999999999999999999999999999999999999999998
Q ss_pred CCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 367 NNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 367 ~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
|... |.+|+.|+.|+-||-..-..++++.+|...|.|++.+|+|.+++|+|.|.+|++|....
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 8654 88999999999999999999999999999999999999999999999999999998654
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-26 Score=207.00 Aligned_cols=223 Identities=22% Similarity=0.315 Sum_probs=194.2
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s 291 (502)
++|.+.|.+++.+|||++||+|+.|..|.||+..+.+.+. .+.+|.+.|.+++|-.....+++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~-----------------~~~ghr~~V~~L~fr~gt~~lys 261 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK-----------------VFKGHRGAVSSLAFRKGTSELYS 261 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh-----------------cccccccceeeeeeecCccceee
Confidence 4899999999999999999999999999999999876332 24567889999999988889999
Q ss_pred EECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE
Q 010754 292 GSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370 (502)
Q Consensus 292 ~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 370 (502)
++.|+.|++|+++. ..+.++.+|.+.|.+|.-...++.+-+|+.|+++++|++. ......|.++.+.+-+++|.++..
T Consensus 262 ~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~H 340 (479)
T KOG0299|consen 262 ASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEH 340 (479)
T ss_pred eecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccc
Confidence 99999999999874 5667889999999999988888888888899999999994 444556788899999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEec-C-----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEE
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFAG-H-----------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD----KYVH 434 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~~-h-----------~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~----~~~~ 434 (502)
|++|+.+|.|.+|++.+.+|+.+... | ...|++++..|...++|+||.+|.|++|-+..+ +++.
T Consensus 341 fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 341 FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee
Confidence 99999999999999999999877642 2 127999999999999999999999999998776 4555
Q ss_pred EeccCCCcEEEEEEccCCC
Q 010754 435 DLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 435 ~~~~h~~~i~~v~~sp~g~ 453 (502)
.+. -.+-|++++|+++|.
T Consensus 421 ~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 421 SLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred ecc-cccEEEEEEEccCCC
Confidence 555 567899999999997
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=227.24 Aligned_cols=258 Identities=22% Similarity=0.324 Sum_probs=206.9
Q ss_pred cCCCceEEEEEcCCCCeEEEEe--CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
.+...|++++.+|+|..+|||+ .||.++||+...--....... ..+.........|.+.|+|+.|+|||++||
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~-----~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKN-----ENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhh-----cccchhheeeccccCceeEEEECCCCCeEe
Confidence 3456799999999999999999 899999999764210000000 012223344556789999999999999999
Q ss_pred EEECCCeEEEEECCC-------------------ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 291 TGSYDGQARIWSTNG-------------------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 291 s~~~dg~i~iwd~~~-------------------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
+|+.|+.|.||.... +.+..+.+|...|..++|+|++.+|++++.|++|.+||.++.+.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence 999999999998651 1466788999999999999999999999999999999999999999
Q ss_pred EEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCC------CcEEEEEEcCCCCEEEEEeC----CC
Q 010754 352 QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQ------GEVNCVKWDPTGSLLASCSD----DV 420 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~------~~i~~l~~sp~g~~las~s~----dg 420 (502)
.+.+|.+.|-.+.|.|- ..|++-+.|++|++|++.+....+.+.++. ..+..+.|||||.+|++... -.
T Consensus 166 vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~ 245 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKS 245 (942)
T ss_pred eeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcc
Confidence 99999999999999885 457888999999999988877777776553 35788999999999998753 34
Q ss_pred cEEEEECCCCeeEEEeccCCCcEEEEEEccCCC------CCCC-CC-c--cEEEEeecCceEEEE
Q 010754 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS------GTNN-PN-Q--QLILARLIPYFLYWI 475 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~------~~~~-~~-~--~l~las~~~~~~iw~ 475 (502)
++.|.+-.+.+.-..+-+|.+++..++|+|.=- +... ++ . -+..||-|+.+.||.
T Consensus 246 ~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 246 TIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred eeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 789999989998889999999999999998421 1111 11 2 344566678899995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-27 Score=216.78 Aligned_cols=206 Identities=21% Similarity=0.385 Sum_probs=177.1
Q ss_pred eecCccccCCCCeEEEEECC-CCCEEEEEECCCeEEEEECC--CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEE
Q 010754 265 HVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341 (502)
Q Consensus 265 ~~~~~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~ 341 (502)
.......+|...|+++.|.| .+.+|++|+.|+.|+||++- +.++.++.+|..+|..++|+++|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 34455678899999999999 89999999999999999964 6889999999999999999999999999999999999
Q ss_pred EEcCCCceEEEEeeccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 342 WDVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
||+++|+++..|. ....+.++.|.|+ +.|++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+++++.++|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999886 4456788999775 469999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCee--------------------------------E--------------EEeccCC--CcEEEEEEccC
Q 010754 420 VTAKIWNMKQDKY--------------------------------V--------------HDLREHS--KEIYTIRWSPT 451 (502)
Q Consensus 420 g~i~iwd~~~~~~--------------------------------~--------------~~~~~h~--~~i~~v~~sp~ 451 (502)
++++||+.+..-. + ..+.+|. +--..+.||||
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 9999999754211 1 1233554 33567899999
Q ss_pred CCCCCCCCccEEEEeecCceEEEEeee
Q 010754 452 GSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 452 g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
|. .|+.|.++|.+.+|+|..
T Consensus 444 G~-------~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 444 GR-------TLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred CC-------eEEeecCCccEEEeechh
Confidence 99 777777778888887643
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=222.78 Aligned_cols=238 Identities=25% Similarity=0.394 Sum_probs=208.8
Q ss_pred EEecc-CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 209 TILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 209 ~~l~~-H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
..+.+ |...+.|..|+ +.++++++.|++|++|+..++.. ......+|.+.|.++++...+.
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~----------------i~~~l~GH~g~V~~l~~~~~~~ 262 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYL----------------ILTRLVGHFGGVWGLAFPSGGD 262 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceE----------------EEeeccCCCCCceeEEEecCCC
Confidence 34444 66778888888 66799999999999999887653 2233567889999999988888
Q ss_pred EEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
++++|+.|.++++||.. +.+...+.+|.+.|.++... ..++++|+.|.+|++|++.++.++..+.+|..+|.++...
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 99999999999999965 67888999999999999765 4678889999999999999999999999999999999988
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccCCCcEEE
Q 010754 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYT 445 (502)
Q Consensus 367 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~ 445 (502)
+..+++|+.|++|.+||+.++++++++.+|...|.++.+.+. ..+++|+.|++|++||+++. +|+..+.+|..-+..
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~ 418 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS 418 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccc
Confidence 888999999999999999999999999999999999988765 89999999999999999999 999999999988866
Q ss_pred EEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 446 IRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+.+... .|+.+++|+.+++|+..
T Consensus 419 l~~~~~---------~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 419 LLLRDN---------FLVSSSADGTIKLWDAE 441 (537)
T ss_pred cccccc---------eeEeccccccEEEeecc
Confidence 555443 67999999999999643
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=201.26 Aligned_cols=231 Identities=21% Similarity=0.329 Sum_probs=197.5
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+.+.+|+||...|+.+.++|+...+++++.|..|+||....... ......|..+|+.+..+|.
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----------------~~~~~~h~~~V~~ls~h~t 314 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----------------PTSSRPHEEPVTGLSLHPT 314 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----------------ccccccccccceeeeeccC
Confidence 44788999999999999999999999999999999999876542 2233456789999999999
Q ss_pred CCEEEEEECCCeEEEEECCCceEEEecCcc---CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 286 GTLLATGSYDGQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
|.||++++.||...+.|.+.........+. -.+++.+|+|||..|.+|..|+.|++||+.++..+..|.+|.++|..
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 999999999999999998755444433332 35899999999999999999999999999999999999999999999
Q ss_pred EEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeEEEecc
Q 010754 363 VDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNM--KQDKYVHDLRE 438 (502)
Q Consensus 363 v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~-~~i~~l~~sp~g~~las~s~dg~i~iwd~--~~~~~~~~~~~ 438 (502)
+.|+.++. +++++.|+.|++||++..+..+++.-.. ..+.++.|++.|.+|+.++.|=.|++++- .++.++..+..
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh
Confidence 99998877 7788899999999999998888886443 36999999999999999988766666653 35677888888
Q ss_pred CCCcEEEEEEccCCC
Q 010754 439 HSKEIYTIRWSPTGS 453 (502)
Q Consensus 439 h~~~i~~v~~sp~g~ 453 (502)
|.+..+.+.|....+
T Consensus 475 ~sg~st~v~Fg~~aq 489 (506)
T KOG0289|consen 475 HSGLSTGVRFGEHAQ 489 (506)
T ss_pred cccccceeeecccce
Confidence 998999999998877
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=217.72 Aligned_cols=234 Identities=18% Similarity=0.325 Sum_probs=193.5
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeE
Q 010754 220 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298 (502)
Q Consensus 220 ~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i 298 (502)
.+..++ .+++|+|||.||.|++|++........ .........|...|..+....+|+.|++++.|-+|
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s-----------~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTV 97 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS-----------TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTV 97 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc-----------cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceE
Confidence 344444 577899999999999999875432100 01234456688899999999999999999999999
Q ss_pred EEEECCC---ceEEEecCccCCeEEEEE-ecCCCEEEEEecCCeEEEEEcCCCc--eEEEE--------e-eccCCeEEE
Q 010754 299 RIWSTNG---DLKCTLSKHKGPIFSLKW-NKKGDYLLTGSCDKTAIVWDVKTEE--WKQQF--------E-FHSGPTLDV 363 (502)
Q Consensus 299 ~iwd~~~---~~~~~~~~~~~~v~~l~~-~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~--------~-~~~~~v~~v 363 (502)
++|+... .+..++..|+..|.|+++ .++...+++|+.|+.|.+||+.++. .+.++ . ++..++.++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 9999653 456678899999999999 7788899999999999999999872 22222 2 566678888
Q ss_pred EecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCc
Q 010754 364 DWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (502)
Q Consensus 364 ~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~ 442 (502)
+..+.+ .|++|+..+.+++||.++.+.+..+.||+..|..+..++||..++|+|.||+|++||+...+|+.++..|...
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 886654 5788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCccEEEEeecCce
Q 010754 443 IYTIRWSPTGSGTNNPNQQLILARLIPYF 471 (502)
Q Consensus 443 i~~v~~sp~g~~~~~~~~~l~las~~~~~ 471 (502)
|+++..+|+=. .++.|+.|+.+
T Consensus 258 VWaL~~~~sf~-------~vYsG~rd~~i 279 (735)
T KOG0308|consen 258 VWALQSSPSFT-------HVYSGGRDGNI 279 (735)
T ss_pred eEEEeeCCCcc-------eEEecCCCCcE
Confidence 99999998876 44555444443
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=191.58 Aligned_cols=221 Identities=20% Similarity=0.369 Sum_probs=178.8
Q ss_pred EEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CC
Q 010754 209 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG 286 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g 286 (502)
.+...|.+.|.++...+ .|+++++|+.||.|.+||+++........ -+........+.+..+|...|.++.|-| |.
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--LIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--ceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 44567999999999999 58999999999999999998754211000 0000001123456778889999999999 66
Q ss_pred CEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCC---CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
-++.+++.|.+++|||.++-.........+.|++-+|+|-. ..+++|..|-.|++-|+.+|.+.+.+.+|.+.|.++
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV 194 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE
Confidence 68899999999999999887666666778899999999843 467788888899999999999999999999999999
Q ss_pred EecCCCE--EEEEeCCCeEEEEEcCCC-cceEE--------------EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 364 DWRNNVS--FATSSTDNMIYVCKIGEN-RPIKT--------------FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 364 ~~~~~~~--~~~~~~d~~i~i~d~~~~-~~~~~--------------~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
.|+|... +++|+.||.|++||++.. .+... -..|.+.|++++|+.+|.++++++.|..+++|+
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn 274 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN 274 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence 9988654 789999999999999864 22222 345778899999999999999999999999999
Q ss_pred CCCCe
Q 010754 427 MKQDK 431 (502)
Q Consensus 427 ~~~~~ 431 (502)
..+|+
T Consensus 275 ~~~G~ 279 (397)
T KOG4283|consen 275 MESGR 279 (397)
T ss_pred cccCc
Confidence 87764
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-25 Score=190.76 Aligned_cols=243 Identities=22% Similarity=0.406 Sum_probs=188.2
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CCCEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLL 289 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l 289 (502)
.+|.+-|+|+.|.+.|+++|+|+.|++|+|||..+.... -........|.+.|..+.|.+ -|+.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~-------------W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT-------------WSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc-------------eEEeeeEEecCCcEEEEEecCccccceE
Confidence 579999999999999999999999999999998554311 123344556788999999976 58999
Q ss_pred EEEECCCeEEEEECC-----C-----ceEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCC------ceEE
Q 010754 290 ATGSYDGQARIWSTN-----G-----DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTE------EWKQ 351 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~-----~-----~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~------~~~~ 351 (502)
|++++|+++.||.-. . ....++...++.|+.++|.|. |-.|++++.||.++||+...- .+..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 999999999999742 1 134466677889999999994 568999999999999986432 2222
Q ss_pred EEe-------eccCCeEEEEecCCC----EEEEEeCC-----CeEEEEEcCCCc----ceEEEecCCCcEEEEEEcCC--
Q 010754 352 QFE-------FHSGPTLDVDWRNNV----SFATSSTD-----NMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPT-- 409 (502)
Q Consensus 352 ~~~-------~~~~~v~~v~~~~~~----~~~~~~~d-----~~i~i~d~~~~~----~~~~~~~h~~~i~~l~~sp~-- 409 (502)
.+. .+..+..++.|.+.. .|++|+.+ +.++||....+. .+.++.+|..+|+.|+|.|+
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 222 345678899998653 36776665 478888876543 46677899999999999996
Q ss_pred --CCEEEEEeCCCcEEEEECCCC--------------------eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee
Q 010754 410 --GSLLASCSDDVTAKIWNMKQD--------------------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL 467 (502)
Q Consensus 410 --g~~las~s~dg~i~iwd~~~~--------------------~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~ 467 (502)
-.+||+++.|| |+||++... +.+..+..|.++|+.+.|.-.|. .|...+.
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-------iLsStGd 308 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-------ILSSTGD 308 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-------EEeecCC
Confidence 34799999999 999998731 24556779999999999999998 4444555
Q ss_pred cCceEEEE
Q 010754 468 IPYFLYWI 475 (502)
Q Consensus 468 ~~~~~iw~ 475 (502)
||.+++|-
T Consensus 309 DG~VRLWk 316 (361)
T KOG2445|consen 309 DGCVRLWK 316 (361)
T ss_pred Cceeeehh
Confidence 68888883
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=202.95 Aligned_cols=221 Identities=20% Similarity=0.331 Sum_probs=189.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
.++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. ....|-..|+|+.|+-||.+|++|+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-----------------v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-----------------VLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH-----------------HHHhhccceeEEEEeCCCcEEEecCC
Confidence 4789999999999999999899999999999987543 22456678999999999999999999
Q ss_pred CCeEEEEECC----------CceEEEecCccCCeEEEEEecCC--CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 295 DGQARIWSTN----------GDLKCTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 295 dg~i~iwd~~----------~~~~~~~~~~~~~v~~l~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
||.|.+|.+. ....+.+..|.-+|+.+...+.| .+++|+|.|.++++||+..+..+.++. ...++.+
T Consensus 144 Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~a 222 (476)
T KOG0646|consen 144 DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKA 222 (476)
T ss_pred CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCccee
Confidence 9999999742 34677889999999999987754 689999999999999999999888776 4567888
Q ss_pred EEecCC-CEEEEEeCCCeEEEEEcCCC----------------cceEEEecCCC--cEEEEEEcCCCCEEEEEeCCCcEE
Q 010754 363 VDWRNN-VSFATSSTDNMIYVCKIGEN----------------RPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAK 423 (502)
Q Consensus 363 v~~~~~-~~~~~~~~d~~i~i~d~~~~----------------~~~~~~~~h~~--~i~~l~~sp~g~~las~s~dg~i~ 423 (502)
+...|. ..+.+|+.+|.|.+.++... ..+..+.||.+ .|+|++++-||.+|++|+.||.|+
T Consensus 223 v~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 223 VALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 888764 55889999999999887542 24567889988 999999999999999999999999
Q ss_pred EEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
|||+.+.++++++....++|+.+.+.|--.
T Consensus 303 vWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred EEecchHHHHHHHhhhccccceeEeecccc
Confidence 999999999998886778999999966543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=219.03 Aligned_cols=209 Identities=19% Similarity=0.333 Sum_probs=178.5
Q ss_pred eeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 201 FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 201 ~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
+.+...++..++||.+.|..+.|+. ..+|+++|.|.|||+|++....++. . ..|...|||+
T Consensus 355 f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~-------------~-----F~HndfVTcV 415 (712)
T KOG0283|consen 355 FVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLK-------------V-----FSHNDFVTCV 415 (712)
T ss_pred ccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceee-------------E-----EecCCeeEEE
Confidence 3455677889999999999999995 4589999999999999998776532 1 2357789999
Q ss_pred EECC-CCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec---
Q 010754 281 DWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--- 356 (502)
Q Consensus 281 ~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--- 356 (502)
+|+| |.+++++|+-||.||||++....+.....-...|++++|.|+|++.++|+.+|.+++|+....+....+..+
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 9999 889999999999999999988888777777799999999999999999999999999999888776655432
Q ss_pred -----cCCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEecCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 357 -----SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 357 -----~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~--~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
...|+.+.|.+.. .+++.+.|..|+|||.+....+..|+|+.. .-....|+.||++|+++++|..|+||+.
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 2269999997644 488999999999999999999999998753 3446689999999999999999999997
Q ss_pred C
Q 010754 428 K 428 (502)
Q Consensus 428 ~ 428 (502)
.
T Consensus 576 ~ 576 (712)
T KOG0283|consen 576 D 576 (712)
T ss_pred C
Confidence 4
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=190.91 Aligned_cols=282 Identities=19% Similarity=0.315 Sum_probs=225.2
Q ss_pred ccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEe------cCCCCc-----cC-C--
Q 010754 191 DIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT------IADGTS-----NG-G-- 252 (502)
Q Consensus 191 ~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~------~~~~~~-----~~-~-- 252 (502)
.+.+.+++....++ ...+..+.||.++|+++.|++.+.++++++.|++..||. +..... .. .
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 34455555544443 456788999999999999999999999999999999998 222100 00 0
Q ss_pred -------CCC--CCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEE
Q 010754 253 -------AQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLK 322 (502)
Q Consensus 253 -------~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~ 322 (502)
... .......++.+...+.+|...|.+..|-..|+.+++++.|.+..+||++ +..+..+.+|....+.++
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence 000 0111123344455666788999999999999999999999999999987 567788999999999999
Q ss_pred EecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCc-ceEEEecCCCc
Q 010754 323 WNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGE 400 (502)
Q Consensus 323 ~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~ 400 (502)
-+|..+++++++.|.+.++||++.. ..+..|.+|...|+++.|..+..+++|+.|.+|++||+++.+ ++.++. ..++
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~ 400 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSP 400 (481)
T ss_pred cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCc
Confidence 9999999999999999999999843 356778999999999999999999999999999999999875 677776 5678
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE----EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH----DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~----~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++.++.+..+..||.--++..|++||++...+-+ .-++|..-|.+++|..+-. -..|++++.|..+.-|..
T Consensus 401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp-----~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP-----ACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred cceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc-----ccccccccccceeeeeEe
Confidence 9999999888899999999999999987554322 2248888999999998755 246788888888888865
Q ss_pred ee
Q 010754 477 SI 478 (502)
Q Consensus 477 ~~ 478 (502)
.+
T Consensus 476 n~ 477 (481)
T KOG0300|consen 476 NT 477 (481)
T ss_pred cc
Confidence 43
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=188.63 Aligned_cols=218 Identities=19% Similarity=0.316 Sum_probs=177.0
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
.+.|..+.|+|.+..|+.++.||++++|++....... ...|..++.+++|.+ ...+++|+-
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~------------------~~~~~~plL~c~F~d-~~~~~~G~~ 73 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL------------------KFKHGAPLLDCAFAD-ESTIVTGGL 73 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh------------------heecCCceeeeeccC-CceEEEecc
Confidence 4679999999998889999999999999998754221 123467899999987 467899999
Q ss_pred CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEE
Q 010754 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS 374 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~ 374 (502)
||.|+++|+++.....+..|..+|.||.+++....+++|+.|++|++||.+.......+.. ...|.+++.. ++.|++|
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~-g~~LvVg 151 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS-GNRLVVG 151 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc-CCEEEEe
Confidence 9999999999988888999999999999999889999999999999999987554444432 2256655543 4456777
Q ss_pred eCCCeEEEEEcCCCcc------------------------------------------------eEEEecCC--------
Q 010754 375 STDNMIYVCKIGENRP------------------------------------------------IKTFAGHQ-------- 398 (502)
Q Consensus 375 ~~d~~i~i~d~~~~~~------------------------------------------------~~~~~~h~-------- 398 (502)
+.+..+.+||+++... -..|+.|.
T Consensus 152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~ 231 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEI 231 (323)
T ss_pred ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceE
Confidence 7777888888765321 12344453
Q ss_pred -CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 399 -GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 399 -~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
-+|++|+|+|-...||||+.||.|.+||+.+.+.+..+......|.+++|+.+|.
T Consensus 232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 2699999999999999999999999999999999998887778899999999999
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=201.67 Aligned_cols=234 Identities=20% Similarity=0.305 Sum_probs=194.4
Q ss_pred CCceEEEEEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 215 TSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 215 ~~~V~~~~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
.++|.+++|+|.. .-+|+.+. -.+.||+..+..... ........|.+++|..||++|++|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k-----------------~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRK-----------------TFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhh-----------------hHHhhccceeEEEeecCCeEEEccC
Confidence 3679999999953 34555544 579999977654221 1122245799999999999999999
Q ss_pred CCCeEEEEECCC-ceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC--C
Q 010754 294 YDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN--V 369 (502)
Q Consensus 294 ~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~--~ 369 (502)
..|.|+|||... ..+..+..|..+|..+.|+|++ ..|++|+.|+.+++||+.+......+.+|.+.|.+.+|+|. .
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 999999999654 2456788999999999999966 56778888999999999998876688999999999999775 4
Q ss_pred EEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeccCCCcEEEEE
Q 010754 370 SFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIR 447 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~v~ 447 (502)
.+++|+-||.|++||++.. ..+..+. |..+|..+.+-|.|..+|+++.. .|+|||+-+|. .+..+..|...|+|++
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLR 245 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEE
Confidence 5999999999999999988 6667776 99999999999999999999875 69999998655 4445555999999999
Q ss_pred EccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 448 WSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 448 ~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+..+++ .|++++-|+.++++.
T Consensus 246 l~s~~~-------rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 246 LASDST-------RLLSGSLDRHVKVFD 266 (487)
T ss_pred eecCCc-------eEeecccccceEEEE
Confidence 999987 899999999999997
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=193.21 Aligned_cols=228 Identities=26% Similarity=0.411 Sum_probs=196.7
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.++.+.||.+.|+.++-.....++.+++.|.+.+||.++++.++ ....+|.+.|+++.|++.+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-----------------~~Y~GH~GSVNsikfh~s~ 202 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-----------------ATYTGHTGSVNSIKFHNSG 202 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-----------------eeecccccceeeEEecccc
Confidence 35678899999999998887789999999999999999998854 2345678999999999999
Q ss_pred CEEEEEECCCeEEEEEC-------------------------------C------C----ceEEEecCccCCeEEEEEec
Q 010754 287 TLLATGSYDGQARIWST-------------------------------N------G----DLKCTLSKHKGPIFSLKWNK 325 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~-------------------------------~------~----~~~~~~~~~~~~v~~l~~~~ 325 (502)
.++++++.|++..||.. + + -.+..+.+|.+.|.+..|-.
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 99999999999999941 0 0 03456788999999999999
Q ss_pred CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEE
Q 010754 326 KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNC 403 (502)
Q Consensus 326 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~ 403 (502)
.|+.+++++.|++..+||+.++..+..+.+|....+.++-+|..+ +++++.|.+.++||++.. ..+..|.||...|++
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 999999999999999999999999999999999999998887665 567888999999999865 457889999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeccCCCcEEEEEEccCCC
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+.|.-+. .+++||+|.+|+|||+++.. ++.+++ ..++++.++.+.-+.
T Consensus 363 ~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~ 411 (481)
T KOG0300|consen 363 VVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHP 411 (481)
T ss_pred EEEecCC-ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCc
Confidence 9998665 57899999999999998754 566766 566888998888776
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=198.91 Aligned_cols=195 Identities=19% Similarity=0.391 Sum_probs=170.3
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEE--------EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEc
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~--------~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~ 344 (502)
...+.|..|+|||++|++|+-||.|.+|+.. ++... .+.-+..+|.|+.|+.+...+++|+.||.|++|.+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 4568899999999999999999999999954 33322 34457899999999999999999999999999999
Q ss_pred CCCceEEEEe-eccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 345 KTEEWKQQFE-FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 345 ~~~~~~~~~~-~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
++|.|++.|. .|...|+++.|+.+ ..+++++.|.++++--+.++++++.|+||.+.|+...|.++|..++++|.||+|
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccE
Confidence 9999999997 79999999999765 458999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeeEEEec--cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 423 KIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~--~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
+||+.++.+|+.+++ +..-+|.++..-|..+ ..++++..+.++.+-
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp------eh~iVCNrsntv~im 420 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP------EHFIVCNRSNTVYIM 420 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCC------ceEEEEcCCCeEEEE
Confidence 999999999999998 4456799998888765 344555555555444
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=187.50 Aligned_cols=202 Identities=21% Similarity=0.390 Sum_probs=171.3
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.|+.-|.+|+|+.|.++|++|+.+..+||||++..+. ......+|.+.|..+-|....+.|++.
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A----------------pp~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA----------------PPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC----------------CchhhcCCCCcceeEEEeccCceEEee
Confidence 4788899999999999999999999999999986542 234456778899999999999999999
Q ss_pred ECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEE
Q 010754 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSF 371 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~ 371 (502)
+.|++||+||.+..........+.+|+++.++++|.+|.+ ...+.|.+||..+...++.+... ..|.+.+..|+ ..|
T Consensus 162 add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFF 239 (334)
T ss_pred ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCc-cccccccccCCCceE
Confidence 9999999999876554444456789999999999986655 56789999999998888877643 34666667665 568
Q ss_pred EEEeCCCeEEEEEcCCCcceEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 010754 372 ATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 372 ~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
++|+.|..++.||..++..+..+ ++|.++|.|+.|+|+|...|+||.||+|+||.+..++.
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 88999999999999999999887 89999999999999999999999999999999876553
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=187.46 Aligned_cols=247 Identities=21% Similarity=0.350 Sum_probs=187.0
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccC------CCC-CCCce-------------------
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG------GAQ-NGPLN------------------- 259 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~------~~~-~~~~~------------------- 259 (502)
-.+.+|+||.+.|++++|+.||+.|||++.|++|+||++.+-.... ... .++..
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 3467899999999999999999999999999999999987632110 000 01100
Q ss_pred eEEEeeec----------------CccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEE
Q 010754 260 VLVLKHVK----------------GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW 323 (502)
Q Consensus 260 ~~~~~~~~----------------~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~ 323 (502)
....+..+ .....|.-.|..+-...++.+|++++.|..|.+|++.|+.+.........-+..+.
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceee
Confidence 00000000 01113445566666777889999999999999999999999888877777788899
Q ss_pred ecCCCEEEEEecCCeEEEEEcC---CCc-----eEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCC------
Q 010754 324 NKKGDYLLTGSCDKTAIVWDVK---TEE-----WKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN------ 388 (502)
Q Consensus 324 ~~~~~~l~s~~~d~~i~~wd~~---~~~-----~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~------ 388 (502)
+|+|+++++++..--|++|.+- .|. .+..+.+|...|..++|+++ .++++.+.||++++||++-.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999862 222 34567889999999999876 55999999999999998531
Q ss_pred -cceEEEe----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-cCCCcEEEEEEccCCC
Q 010754 389 -RPIKTFA----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 389 -~~~~~~~----~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~ 453 (502)
+.++.+. ...+....+.++|+|+.||.+.. ..|+++..++++..-.+. .|+..|.+|+|+|+|.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK 386 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence 2233321 12334458999999999987664 469999999998776665 7999999999999998
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-24 Score=182.26 Aligned_cols=198 Identities=23% Similarity=0.386 Sum_probs=178.9
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEE-CCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce
Q 010754 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 349 (502)
.+|..+++.+.++.+|.+|.+|+.|..+.||- .++..+-++.+|.+.|+|+..+.+.+++++|+.|.++++||+.+|++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 46788999999999999999999999999997 58999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCeEEEEecCCCEEEEEeCC------CeEEEEEcC-------CCcceEEEecCCCcEEEEEEcCCCCEEEEE
Q 010754 350 KQQFEFHSGPTLDVDWRNNVSFATSSTD------NMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 350 ~~~~~~~~~~v~~v~~~~~~~~~~~~~d------~~i~i~d~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~las~ 416 (502)
+..+. ...+|..+.|+.++.++..+.| +.|.++|++ ...|+..+..+.+.++.+-|+|-+.+|++|
T Consensus 87 la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 98887 5668999999887776666554 468999998 456788888899999999999999999999
Q ss_pred eCCCcEEEEECCCCe-eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 417 SDDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 417 s~dg~i~iwd~~~~~-~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+||.|.+||+++++ .+.....|+..|+.|.++||.. +++++|-|.+.++|+.
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-------~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-------YFITGSKDTTAKLVDV 219 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhccccccccccCCcc-------eEEecccCccceeeec
Confidence 999999999999985 5566678999999999999999 8999999999999974
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=208.25 Aligned_cols=262 Identities=22% Similarity=0.330 Sum_probs=204.6
Q ss_pred EEeccCCCceEEEEEcCC-----------CCeEEEEeCCCcEEEEecCCCCccCCCCCCCce--------------eEEE
Q 010754 209 TILEGHTSEVCACAWSPA-----------GSLLASGSGDSTARIWTIADGTSNGGAQNGPLN--------------VLVL 263 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~-----------~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~--------------~~~~ 263 (502)
..+--|...|+.+.--|. ...++|++.|++||+|++..+........+.+. .+..
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d 442 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHD 442 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhh
Confidence 344567787877766551 125899999999999999864322111111000 0000
Q ss_pred ------eeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEec---CCCEEEEE
Q 010754 264 ------KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNK---KGDYLLTG 333 (502)
Q Consensus 264 ------~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~---~~~~l~s~ 333 (502)
.............+.+++.+|+|++||+|..-|.++||++.. ........|...|.|+.|+. ..++|+++
T Consensus 443 ~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa 522 (1080)
T KOG1408|consen 443 ASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA 522 (1080)
T ss_pred ccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc
Confidence 000011112345699999999999999999999999999764 56667889999999999985 34689999
Q ss_pred ecCCeEEEEEcC-CCceEEEEeeccCCeEEEEec----------------------------------------------
Q 010754 334 SCDKTAIVWDVK-TEEWKQQFEFHSGPTLDVDWR---------------------------------------------- 366 (502)
Q Consensus 334 ~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~v~~~---------------------------------------------- 366 (502)
+.|+-|.+||+. ...+++++..|...|+++.|.
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 999999999984 445667777777777777663
Q ss_pred ---C-CCEEEEEeCCCeEEEEEcCCCcceEEEec---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC
Q 010754 367 ---N-NVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 367 ---~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h 439 (502)
| ...+++++.|+.|+||++.+++..+.|++ |.+....+..+|.|.|||+.+.|.++.++|..+++|+..+.+|
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 1 23468999999999999999999999976 5677889999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+.-|+.+.|++|-. .|+.+++|+.|.+|...
T Consensus 683 sE~VTG~kF~nDCk-------HlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCK-------HLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chheeeeeecccch-------hheeecCCceEEEEECc
Confidence 99999999999988 78999999999999644
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=207.11 Aligned_cols=238 Identities=24% Similarity=0.355 Sum_probs=199.8
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEE-EEECC-C
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWNG-E 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~-~ 285 (502)
-+.+.||...|..++..+ +..++++|.||++++|+-........ ....++.+.|.+ +++-+ +
T Consensus 7 s~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~---------------~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLET---------------HAFEGPKGFIANSICYAESD 70 (745)
T ss_pred EEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccc---------------eecccCcceeeccceecccc
Confidence 467899999999999875 44899999999999999765543220 111223344444 67764 5
Q ss_pred CCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 286 GTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
+-.+++|+.|++|.+|.+.+ .....+.+|...|.++....++. +++||.|.++++|- .+++...+.+|...|.++.
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVA 147 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeee
Confidence 55699999999999999764 67789999999999999877776 99999999999995 4666777999999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE
Q 010754 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (502)
Q Consensus 365 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 444 (502)
..+.+.+++|+.|.+|++|.- ++.+++|.+|.+.|.++++-+++ .|+||+.||.|+.|++ ++.++.++.+|+.-|+
T Consensus 148 ~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vY 223 (745)
T KOG0301|consen 148 SLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVY 223 (745)
T ss_pred ecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEE
Confidence 999999999999999999985 77899999999999999998775 4679999999999998 8899999999999999
Q ss_pred EEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+++..+++. .+++++.|++++||.
T Consensus 224 sis~~~~~~-------~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 224 SISMALSDG-------LIVSTGEDRTLRIWK 247 (745)
T ss_pred EEEecCCCC-------eEEEecCCceEEEee
Confidence 999666655 688888899999995
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=197.10 Aligned_cols=212 Identities=25% Similarity=0.451 Sum_probs=174.9
Q ss_pred ceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-
Q 010754 207 DVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 284 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~- 284 (502)
+-..|.||.+.-+.++|++. .-.|++|+.|++|++||+........ .......+.+|...|..++|++
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~----------~~~p~~~~~~h~~~VeDV~~h~~ 238 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK----------VVDPKTIFSGHEDVVEDVAWHPL 238 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc----------cccceEEeecCCcceehhhcccc
Confidence 34589999998999999995 45899999999999999986543210 0113344567888999999999
Q ss_pred CCCEEEEEECCCeEEEEECCC---ceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCC
Q 010754 285 EGTLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGP 359 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~ 359 (502)
+..++++++.|+.+.|||++. +......+|.++|.|++|+| ++..||||+.|++|.+||+|.. +++.++.+|...
T Consensus 239 h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred chhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence 567889999999999999873 44556778999999999999 4567889999999999999875 467889999999
Q ss_pred eEEEEecCC--CEEEEEeCCCeEEEEEcCCC--------------cceEEEecCCCcEEEEEEcCCCCE-EEEEeCCCcE
Q 010754 360 TLDVDWRNN--VSFATSSTDNMIYVCKIGEN--------------RPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTA 422 (502)
Q Consensus 360 v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~--------------~~~~~~~~h~~~i~~l~~sp~g~~-las~s~dg~i 422 (502)
|..|.|+|. ..+++++.|+.+.+||+..- ..+....||...|+.+.|+|+..+ |+|.++|+.+
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 999999885 45899999999999998642 234667789999999999998765 7888999999
Q ss_pred EEEECC
Q 010754 423 KIWNMK 428 (502)
Q Consensus 423 ~iwd~~ 428 (502)
.||.+.
T Consensus 399 qIW~~s 404 (422)
T KOG0264|consen 399 QIWQMA 404 (422)
T ss_pred EEeecc
Confidence 999875
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=187.99 Aligned_cols=206 Identities=21% Similarity=0.413 Sum_probs=171.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+++|..|.++|+++.|+|...+|++|+.|++|+++|+.+..... .+ ........|.++.|+|.|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr-------------A~--K~~qd~~~vrsiSfHPsG 228 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR-------------AF--KVFQDTEPVRSISFHPSG 228 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH-------------HH--HHhhccceeeeEeecCCC
Confidence 478999999999999999999999999999999999998643211 01 011224579999999999
Q ss_pred CEEEEEECCCeEEEEECCCceEEE----ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee-cc-CCe
Q 010754 287 TLLATGSYDGQARIWSTNGDLKCT----LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-HS-GPT 360 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~-~~v 360 (502)
.+|++|.....+++||++...... -..|++.|+++.+++.++..++++.||.|++||--+++|+.++.. |. ..|
T Consensus 229 efllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEV 308 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCcee
Confidence 999999999999999998654432 246899999999999999999999999999999999999888754 43 468
Q ss_pred EEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEe--------------------------------------------
Q 010754 361 LDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-------------------------------------------- 395 (502)
Q Consensus 361 ~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~-------------------------------------------- 395 (502)
.+..|..++. +++.+.|..+++|.+.+++++..+.
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 8888876655 6778899999999999998876554
Q ss_pred -----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 396 -----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 396 -----~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
+|++.+..+.-||.+.-+++||.|..+|+|--
T Consensus 389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 67788888888888888889999988998864
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=208.27 Aligned_cols=252 Identities=21% Similarity=0.364 Sum_probs=195.7
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEEEC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSY 294 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~~~ 294 (502)
+...+|..+++-..++.++. ..++||.+........ ..............+..+.|+. +.++||+++.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~----------~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEK----------CNHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcc----------eeeecccccceeeehhhcccccchhhhheeecC
Confidence 34556777888777888776 6899998876442211 0011011111223466778875 5679999999
Q ss_pred CCeEEEEECCC----ceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC--
Q 010754 295 DGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-- 367 (502)
Q Consensus 295 dg~i~iwd~~~----~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-- 367 (502)
+|.|.+||+.. ++...+..|...+.++.|++.. ++|++|+.||+|++||++..+...++.+....|.+|.|+|
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 99999999764 4556788999999999999854 6888999999999999999999999999999999999966
Q ss_pred CCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEeccCCCcEE
Q 010754 368 NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY--VHDLREHSKEIY 444 (502)
Q Consensus 368 ~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~--~~~~~~h~~~i~ 444 (502)
+..|+++...|.+.+||++.. ++...+.+|.++|.|+.|+|++.+||||+.|+.|+|||+.+.+. ++++. ...+|.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~ 267 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVG 267 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceee
Confidence 567999999999999999976 56788999999999999999999999999999999999986543 33443 456899
Q ss_pred EEEEccCCCCCCCCCccEEEEee----cCceEEEEeeeEEEeeeccc
Q 010754 445 TIRWSPTGSGTNNPNQQLILARL----IPYFLYWICSIYFKYFGTTE 487 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~----~~~~~iw~~~~~~~~~g~~~ 487 (502)
.|+|-|..+ . .||+. +-.|.||+..-.|-|...+.
T Consensus 268 rVkWRP~~~-------~-hLAtcsmv~dtsV~VWDvrRPYIP~~t~~ 306 (839)
T KOG0269|consen 268 RVKWRPARS-------Y-HLATCSMVVDTSVHVWDVRRPYIPYATFL 306 (839)
T ss_pred eeeeccCcc-------c-hhhhhhccccceEEEEeeccccccceeee
Confidence 999999987 2 33333 24588888766665555544
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-25 Score=211.64 Aligned_cols=229 Identities=20% Similarity=0.414 Sum_probs=207.3
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
.+.+..|...|.|+..-..++.+++|+.|..+-+|.+.....+ ..+.+|...|.++.|++...
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----------------~S~~~hespIeSl~f~~~E~ 83 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-----------------TSLTGHESPIESLTFDTSER 83 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-----------------heeeccCCcceeeecCcchh
Confidence 3456678899999998667899999999999999998654321 12457789999999999999
Q ss_pred EEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
+|++|+.+|+|++||++ .+.+.++.+|...+.++.|+|-+.+++.|+.|+.+++||.+...|...+.+|...+..+.|.
T Consensus 84 LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ls 163 (825)
T KOG0267|consen 84 LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLS 163 (825)
T ss_pred hhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeec
Confidence 99999999999999986 56788999999999999999999999999999999999999889999999999999999999
Q ss_pred CCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEE
Q 010754 367 NNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (502)
Q Consensus 367 ~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 445 (502)
|++. ++.++.|..++|||...++.+..|.+|.+.+..+.|+|..-++++||.|++|++||+++...+.........|.+
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCcee
Confidence 9885 667777899999999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccCCC
Q 010754 446 IRWSPTGS 453 (502)
Q Consensus 446 v~~sp~g~ 453 (502)
++|+|+|.
T Consensus 244 ~~fn~~~~ 251 (825)
T KOG0267|consen 244 LAFNPDGK 251 (825)
T ss_pred eeecCCce
Confidence 99999998
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=197.95 Aligned_cols=229 Identities=24% Similarity=0.460 Sum_probs=189.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeE
Q 010754 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i 298 (502)
.-+.|+ ..+.||.|.. ..|.+|+..++... .+..+. ...|+++.|+++|.+|++|..+|.|
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~-----------~l~~~~------~~~vtSv~ws~~G~~LavG~~~g~v 241 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVT-----------ELCSFG------EELVTSVKWSPDGSHLAVGTSDGTV 241 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceE-----------EeEecC------CCceEEEEECCCCCEEEEeecCCeE
Confidence 346788 4557777754 57999998877521 111111 4679999999999999999999999
Q ss_pred EEEECC-CceEEEecC-ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE-EeeccCCeEEEEecCC-CEEEEE
Q 010754 299 RIWSTN-GDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNN-VSFATS 374 (502)
Q Consensus 299 ~iwd~~-~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~-~~~~~~ 374 (502)
.|||.. .+....+.. |...|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|+++ ..+++|
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG 319 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG 319 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC
Confidence 999965 455566666 99999999998 67899999999999999998876555 7889999999999765 568999
Q ss_pred eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC-CCEEEEEeC--CCcEEEEECCCCeeEEEeccCCCcEEEEEEccC
Q 010754 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSD--DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 375 ~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~-g~~las~s~--dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~ 451 (502)
+.|+.+.|||.....+...+..|.+.|.+++|+|- ..+||+|+. |++|++||..+++.+..+. ..+.|.+|.|++.
T Consensus 320 gnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 320 GNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKK 398 (484)
T ss_pred CCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCC
Confidence 99999999999999999999999999999999994 668898765 9999999999999998887 4567999999999
Q ss_pred CCCCCCCCccEEEEee--cCceEEEEe
Q 010754 452 GSGTNNPNQQLILARL--IPYFLYWIC 476 (502)
Q Consensus 452 g~~~~~~~~~l~las~--~~~~~iw~~ 476 (502)
.. .++++-+ ...+.+|.+
T Consensus 399 ~k-------Ei~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 399 YK-------ELLSTHGYSENQITLWKY 418 (484)
T ss_pred CC-------EEEEecCCCCCcEEEEec
Confidence 86 5555443 366899965
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-24 Score=201.72 Aligned_cols=249 Identities=17% Similarity=0.271 Sum_probs=210.3
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE-CCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~g 286 (502)
+..++.|.+.|..++...+++.|+++|.|.+|++|+...+.. ........|...|.|+++ .++.
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---------------~c~stir~H~DYVkcla~~ak~~ 130 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---------------FCMSTIRTHKDYVKCLAYIAKNN 130 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---------------hhHhhhhcccchheeeeecccCc
Confidence 667889999999999999999999999999999999876531 022333457788999999 8889
Q ss_pred CEEEEEECCCeEEEEECCCc-----------eEEEec-CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe
Q 010754 287 TLLATGSYDGQARIWSTNGD-----------LKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~-----------~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 354 (502)
.++|+|+.|+.|.+||++.. ....+. ++..+|++++.++.|..|++|+..+.+++||.++++.+..+.
T Consensus 131 ~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr 210 (735)
T KOG0308|consen 131 ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR 210 (735)
T ss_pred eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee
Confidence 99999999999999998743 122333 788999999999999999999999999999999999999999
Q ss_pred eccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 010754 355 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 355 ~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~ 433 (502)
+|...|..+...++ ..+++++.||+|++||++..+++.++..|...|.++..+|+-..+.+|+.||.|..=|+++....
T Consensus 211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~ 290 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS 290 (735)
T ss_pred ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh
Confidence 99999999998665 57999999999999999999999999999999999999999999999999999999999985433
Q ss_pred EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 434 ~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
..+.....+|..+..+.... .+-.++.+..++-|-...
T Consensus 291 tlick~daPv~~l~~~~~~~-------~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 291 TLICKEDAPVLKLHLHEHDN-------SVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred eEeecCCCchhhhhhccccC-------CceeeeccccceecCCcc
Confidence 33333556777877775544 346788899999995433
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=199.90 Aligned_cols=238 Identities=18% Similarity=0.367 Sum_probs=188.4
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCC-ccCCCCCCCceeEEEe------------------ee-----c
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT-SNGGAQNGPLNVLVLK------------------HV-----K 267 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~------------------~~-----~ 267 (502)
.+|+..-+.++|.|+|.+|++++.||.|++|+..... .-..+......+..+. .+ .
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 5799999999999999999999999999999876541 1111110000000000 00 0
Q ss_pred CccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC
Q 010754 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (502)
Q Consensus 268 ~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~ 346 (502)
.......-++++++++.+|+++|.|+.|-.|++.+.. ......+.+|.++|.++.|+|++++|++.+.||.|++||+.+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 0111234579999999999999999999999999965 567788999999999999999999999999999999999999
Q ss_pred CceEEEEeec--------cCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEec--CCCcEEEEEEcCCCCEEEE
Q 010754 347 EEWKQQFEFH--------SGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 347 ~~~~~~~~~~--------~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~--h~~~i~~l~~sp~g~~las 415 (502)
+.+..++.+- ...+..++|+|+ +.|++.+.|+.|.+|+.........+.. +...++.+.|+|+|+|||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 8876665431 345778899887 7899999999999999999988777754 3445999999999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 416 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
++.||.|.|||+.+... ......|.+++|.|++.
T Consensus 250 s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 250 STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred eccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 99999999999998222 22345799999999987
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=175.09 Aligned_cols=222 Identities=25% Similarity=0.462 Sum_probs=176.3
Q ss_pred cccCCCCceeee-------CCCceEEeccCCCceEEEEEcC--CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 192 IATTSASESFEI-------PNSDVTILEGHTSEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 192 ~~~~~~~~~~~~-------~~~~~~~l~~H~~~V~~~~~~p--~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
+++.+.+..+++ +...+..|.||.++|..++|.. .|.+||+++.||.|.||.-.++...
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~------------ 93 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT------------ 93 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh------------
Confidence 445555555443 2245788999999999999975 6999999999999999998876432
Q ss_pred EeeecCccccCCCCeEEEEECCC--CCEEEEEECCCeEEEEECCCc----eEEEecCccCCeEEEEEecC---C------
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGE--GTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKK---G------ 327 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~v~~l~~~~~---~------ 327 (502)
.......|...|++++|.|. |-.|++++.||.|.|.+.+.. .......|.-.|++++|.|- |
T Consensus 94 ---k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 94 ---KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred ---hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence 12233457888999999995 568999999999999987643 33456789999999999985 4
Q ss_pred -----CEEEEEecCCeEEEEEcCCCce--EEEEeeccCCeEEEEecCC-----CEEEEEeCCCeEEEEEcCCCc---ceE
Q 010754 328 -----DYLLTGSCDKTAIVWDVKTEEW--KQQFEFHSGPTLDVDWRNN-----VSFATSSTDNMIYVCKIGENR---PIK 392 (502)
Q Consensus 328 -----~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~v~~~~~-----~~~~~~~~d~~i~i~d~~~~~---~~~ 392 (502)
+.|++|+.|+.|+||+...+.. .+++..|.+-|.+++|.|. ..+++|+.||++.||..+... ...
T Consensus 171 ~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~t 250 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKT 250 (299)
T ss_pred cccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccc
Confidence 5699999999999999987654 3457889999999999775 358999999999999887431 122
Q ss_pred EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 393 ~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
.+......+..+.||+.|++|+.++.|+.|.+|.-.
T Consensus 251 ll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 251 LLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 233345779999999999999999999999999754
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=177.76 Aligned_cols=235 Identities=18% Similarity=0.334 Sum_probs=179.2
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCe
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~ 297 (502)
..||.|++.|.+||+|+.||.|.|||+.+.. ......+|..+|++++||++|+.|++++.|..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-----------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-----------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-----------------hhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 6899999999999999999999999998754 22334567789999999999999999999999
Q ss_pred EEEEECC-CceEEEecCccCCe-----------------------------------------------EEEEEecCCCE
Q 010754 298 ARIWSTN-GDLKCTLSKHKGPI-----------------------------------------------FSLKWNKKGDY 329 (502)
Q Consensus 298 i~iwd~~-~~~~~~~~~~~~~v-----------------------------------------------~~l~~~~~~~~ 329 (502)
|.+||+. +.+...+. ..++| .+..|.+.|++
T Consensus 89 i~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred eEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCE
Confidence 9999964 33222111 11111 12235667899
Q ss_pred EEEEecCCeEEEEEcCCCceEEEEeecc-CCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCc---------ceEEEec--
Q 010754 330 LLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENR---------PIKTFAG-- 396 (502)
Q Consensus 330 l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~---------~~~~~~~-- 396 (502)
+++|...|.+.++|..+.+++..++... ..|..+.++. +..|+.-+.|+.|+.|++..-. +.+++..
T Consensus 168 IitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvV 247 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVV 247 (405)
T ss_pred EEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHH
Confidence 9999999999999999999999988776 6788888855 4558888999999999986311 1111110
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeccCC-CcEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 397 HQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 397 h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~h~-~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
....=.+++|+.+|.|++.|+. -..++||.-..|.+++.+.|.. .....+.|+|-.+ ++..-.+|.+.+|
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp--------~i~si~sg~v~iw 319 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP--------IIASIASGVVYIW 319 (405)
T ss_pred hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee--------eeeeccCCceEEE
Confidence 0122346889999999988775 4679999999999999998777 4678999999976 3444467889999
Q ss_pred Eeee
Q 010754 475 ICSI 478 (502)
Q Consensus 475 ~~~~ 478 (502)
....
T Consensus 320 ~~~~ 323 (405)
T KOG1273|consen 320 AVVQ 323 (405)
T ss_pred Eeec
Confidence 6443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=181.91 Aligned_cols=253 Identities=19% Similarity=0.359 Sum_probs=180.9
Q ss_pred ccCCCceEEEEEcCCC--CeEEEEeCCCcEEEEecCCCCccCCCCCCCcee-EEEeeecCccccCCCCeEEEEECCCC-C
Q 010754 212 EGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNV-LVLKHVKGRTNEKSKDVTTLDWNGEG-T 287 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~--~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~l~~s~~g-~ 287 (502)
-+|.+.|..+.-++-+ .+.|+=+..|.|+||++...-.. +....... ...........+|...-+.++|||-. .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~--l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA--LSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh--hcCccccccccccCceEEecccCccceeeeccccccc
Confidence 4677778888777744 56777788999999998653111 00000000 01112233445677888999999932 2
Q ss_pred EEEEEECCCeEEEEECCCce----EEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCC---ceEEEEeeccCC
Q 010754 288 LLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTE---EWKQQFEFHSGP 359 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~ 359 (502)
.|++|..-+.|++|...... ...+.+|+..|-.|+|+|.. ..|++|+.||+|+|||+|.+ .++.+ ..|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc
Confidence 47788888999999865432 23466799999999999965 68889999999999999988 33333 778899
Q ss_pred eEEEEecCCC-EEEEEeCCCeEEEEEcCC---CcceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCee--
Q 010754 360 TLDVDWRNNV-SFATSSTDNMIYVCKIGE---NRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKY-- 432 (502)
Q Consensus 360 v~~v~~~~~~-~~~~~~~d~~i~i~d~~~---~~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~~~-- 432 (502)
|..|+|+... .|++|+.||+++|||+++ ++++..|+.|..+|++|.|+|. ...|++++.|..|.|||+....-
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 9999997654 589999999999999985 4689999999999999999995 56788889999999999843110
Q ss_pred --------------EEEeccC--CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 433 --------------VHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 433 --------------~~~~~~h--~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
.+-+..| ...|..|.|++.-+ -+++.++-.-+.||
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP-------G~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP-------GLLVSTAIDGFNVF 435 (440)
T ss_pred hhccccccchhcCCceeEEEecchhHhhhheeccCCC-------CeEEEecccceeEE
Confidence 0111224 34588899999876 23444444444554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=174.17 Aligned_cols=238 Identities=19% Similarity=0.323 Sum_probs=183.8
Q ss_pred ccccCCCCceeee---C-CCceEEeccCCCceEEEEEcCCCC--eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEe
Q 010754 191 DIATTSASESFEI---P-NSDVTILEGHTSEVCACAWSPAGS--LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264 (502)
Q Consensus 191 ~~~~~~~~~~~~~---~-~~~~~~l~~H~~~V~~~~~~p~~~--~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 264 (502)
.+++++.++.+.+ + ...+..|-.|.+.|+++.|.+.-. .|++|+.||.|.+|+.....+
T Consensus 55 ~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~--------------- 119 (362)
T KOG0294|consen 55 YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL--------------- 119 (362)
T ss_pred eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE---------------
Confidence 3455566655544 2 234667788999999999999754 899999999999999876542
Q ss_pred eecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 265 ~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
.....+|.+.|+.++.+|.|++.++.+.|+.+++|++- ++....+. -...-..+.|+|.|.+|+.++.+ .|-+|.
T Consensus 120 --~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q 195 (362)
T KOG0294|consen 120 --LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQ 195 (362)
T ss_pred --eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEe
Confidence 23344567789999999999999999999999999954 43332222 22233459999999999888765 688898
Q ss_pred cCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEE--cCCCCEEEEEeCCCc
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW--DPTGSLLASCSDDVT 421 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~--sp~g~~las~s~dg~ 421 (502)
+.+......+... ..+.++.|.....+++|+.++.|.+||.....+...+.+|...|..+.+ .|++.+|+|+|.||.
T Consensus 196 ~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 196 LDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGF 274 (362)
T ss_pred cccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCce
Confidence 8776655544322 4588899999999999999999999999999999999999999999884 467889999999999
Q ss_pred EEEEECCCC-----eeEEEeccCCCcEEEEEEc
Q 010754 422 AKIWNMKQD-----KYVHDLREHSKEIYTIRWS 449 (502)
Q Consensus 422 i~iwd~~~~-----~~~~~~~~h~~~i~~v~~s 449 (502)
|+|||++.. +++..+.. ...++|+...
T Consensus 275 I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 275 IKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred EEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence 999999866 34444442 4456665544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=197.70 Aligned_cols=270 Identities=18% Similarity=0.292 Sum_probs=209.9
Q ss_pred CCceEEeccCCCceEEEEEc-CCCCeEEEEeCCCcEEEEecCCCCcc---------------CCC-----CCCCce----
Q 010754 205 NSDVTILEGHTSEVCACAWS-PAGSLLASGSGDSTARIWTIADGTSN---------------GGA-----QNGPLN---- 259 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~-p~~~~l~sgs~dg~v~iw~~~~~~~~---------------~~~-----~~~~~~---- 259 (502)
++.++.-.||..+-.|+.|. .+|..+.+++.|++.+.+++...... ... ...++.
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 34466677999999999999 47899999999999998876431100 000 000000
Q ss_pred ----------eE----------EEe----eecCc------cccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEE
Q 010754 260 ----------VL----------VLK----HVKGR------TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC 309 (502)
Q Consensus 260 ----------~~----------~~~----~~~~~------~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 309 (502)
+. ... ..-.+ .......+++++.++.|++.+.|+..|.|-+|+++.+...
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 00 000 00001 1112367999999999999999999999999999866555
Q ss_pred -Ee---cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe-cCCCEEEEEeCCCeEEEEE
Q 010754 310 -TL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCK 384 (502)
Q Consensus 310 -~~---~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~-~~~~~~~~~~~d~~i~i~d 384 (502)
.+ ..|+++|++++....++.+++++.+|.+.+||......+..+.... .+..+.+ .....++++..|-.|+++|
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~-~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS-SITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC-CcceeeeeehhhhhhhhcCceeEEEEE
Confidence 34 3799999999999888999999999999999999888777776544 4445555 5567788999999999999
Q ss_pred cCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEE
Q 010754 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL 464 (502)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~l 464 (502)
..+.+.++.|.||.+.|+.++|||||++|++++.|++||+||+.++.++-.+. -..+++++.|||+|. .|.+
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD-------~LAT 634 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGD-------FLAT 634 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCC-------EEEE
Confidence 99999999999999999999999999999999999999999999999998776 667899999999999 5555
Q ss_pred Eeec-CceEEEEeeeEEEee
Q 010754 465 ARLI-PYFLYWICSIYFKYF 483 (502)
Q Consensus 465 as~~-~~~~iw~~~~~~~~~ 483 (502)
+..| ..+.+|.....|...
T Consensus 635 ~Hvd~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 635 VHVDQNGIYLWSNKSLFKSV 654 (910)
T ss_pred EEecCceEEEEEchhHheec
Confidence 5555 568999755555443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=181.68 Aligned_cols=205 Identities=26% Similarity=0.452 Sum_probs=166.9
Q ss_pred ccCCCCeEEEEECCCC--CEEEEEECCCeEEEEECC-----------------CceEEEecCccCCeEEEEEecCC-CEE
Q 010754 271 NEKSKDVTTLDWNGEG--TLLATGSYDGQARIWSTN-----------------GDLKCTLSKHKGPIFSLKWNKKG-DYL 330 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g--~~l~s~~~dg~i~iwd~~-----------------~~~~~~~~~~~~~v~~l~~~~~~-~~l 330 (502)
.+|.+.+..+.-++-+ .+.++-+..|.|+||++. ...+.++.+|...=++|+|||-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3455666666666644 456666778999999863 23566788899999999999933 358
Q ss_pred EEEecCCeEEEEEcCCCceEE---EEeeccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCc--ceEEEecCCCcEEE
Q 010754 331 LTGSCDKTAIVWDVKTEEWKQ---QFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNC 403 (502)
Q Consensus 331 ~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~i~~ 403 (502)
++|..-+.|++|...++.+.. .|.+|...|-+++|+| ++.|++|+.||+|+|||++.+. +....++|.+.|+.
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 888888999999998887643 4667999999999987 4679999999999999999882 23334889999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC---CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEE
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQ---DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYF 480 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~ 480 (502)
|.|+..-.+||+|++||+++|||+++ ++++..++-|..+|++|.|+|... ..++.++.|..+++|+.++.-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------SVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------ceEEeccCCCcEEEEEeeccC
Confidence 99999888999999999999999975 567889999999999999999865 345667778999999988765
Q ss_pred E
Q 010754 481 K 481 (502)
Q Consensus 481 ~ 481 (502)
+
T Consensus 382 D 382 (440)
T KOG0302|consen 382 D 382 (440)
T ss_pred C
Confidence 5
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-23 Score=201.06 Aligned_cols=222 Identities=23% Similarity=0.464 Sum_probs=179.1
Q ss_pred CceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEEE
Q 010754 216 SEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~~ 293 (502)
..+..+.|+. +.++|||++..|.|.+||+..... ......+..|...|++++|++ .-.+|++|+
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r--------------nk~l~~f~EH~Rs~~~ldfh~tep~iliSGS 153 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR--------------NKLLTVFNEHERSANKLDFHSTEPNILISGS 153 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcccc--------------chhhhHhhhhccceeeeeeccCCccEEEecC
Confidence 3456788986 478999999999999999986311 112234566788999999998 456899999
Q ss_pred CCCeEEEEECC-CceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEEecCCC-
Q 010754 294 YDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNV- 369 (502)
Q Consensus 294 ~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~- 369 (502)
.||.|++||++ .+...++.+....|..++|+| .+.+|+++...|.+.+||++.. ++...+..|.++|.++.|+|++
T Consensus 154 QDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~ 233 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE 233 (839)
T ss_pred CCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc
Confidence 99999999987 455667777888999999999 5689999999999999999764 5677788999999999999865
Q ss_pred EEEEEeCCCeEEEEEcCCCcceEEEec-CCCcEEEEEEcCCCC-EEEEEeC--CCcEEEEECCCC-eeEEEeccCCCcEE
Q 010754 370 SFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGS-LLASCSD--DVTAKIWNMKQD-KYVHDLREHSKEIY 444 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~~~~~~~~~-h~~~i~~l~~sp~g~-~las~s~--dg~i~iwd~~~~-~~~~~~~~h~~~i~ 444 (502)
.+|+||.|+.|+|||+.+++.-..... ...+|.+|+|-|... .||+|+. |-.|+|||++.. -+..++..|+..++
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred eeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence 488999999999999987654333322 357899999999865 4777775 788999999754 34577889999999
Q ss_pred EEEEccC
Q 010754 445 TIRWSPT 451 (502)
Q Consensus 445 ~v~~sp~ 451 (502)
.++|-..
T Consensus 314 ~i~W~~~ 320 (839)
T KOG0269|consen 314 GIAWDSG 320 (839)
T ss_pred ceeccCC
Confidence 9999873
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-23 Score=189.13 Aligned_cols=201 Identities=21% Similarity=0.278 Sum_probs=159.9
Q ss_pred cccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCce------EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 270 ~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
..+|+..|.++++.|.|..|++|+.|-.|++||+.+.- ..........|.++.|++.|..|++.+.....+|+|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 34567889999999999999999999999999987532 122334567899999999999999999999999999
Q ss_pred cCCCceEEEE------------eeccCCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCc-ceEEEe-----cCCCcEEE
Q 010754 344 VKTEEWKQQF------------EFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTFA-----GHQGEVNC 403 (502)
Q Consensus 344 ~~~~~~~~~~------------~~~~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~-~~~~~~-----~h~~~i~~ 403 (502)
-....+.... .+|...+++.+|+|.. .|++++.||++++||+...+ .+..|. +..-+++.
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence 5544333322 3577789999998865 49999999999999998764 333343 22346899
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCe--eEE-EeccCCC--cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQDK--YVH-DLREHSK--EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~~~--~~~-~~~~h~~--~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
++|+|+|++||+|+.||+|.+|+..+.. ... .-.+|.. .|++|+||+||+ +|+.-+.|+++++|++.
T Consensus 323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-------~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-------YLLSRGFDDTLKVWDLR 394 (641)
T ss_pred eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc-------hhhhccCCCceeeeecc
Confidence 9999999999999999999999975433 222 2237776 899999999999 78888899999999743
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=187.39 Aligned_cols=235 Identities=17% Similarity=0.251 Sum_probs=196.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
.-|.+|.+.|||+.|++|+.-.++.|||+...... ++...........+++.+||.+..+++..|
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTpr---------------ikaeltssapaCyALa~spDakvcFsccsd 530 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR---------------IKAELTSSAPACYALAISPDAKVCFSCCSD 530 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcc---------------hhhhcCCcchhhhhhhcCCccceeeeeccC
Confidence 45789999999999999999999999999875421 122222223457889999999999999999
Q ss_pred CeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-EEEE
Q 010754 296 GQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFAT 373 (502)
Q Consensus 296 g~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~ 373 (502)
|.|.|||+.. ..+..+.+|...+.||..+++|..|.||+.|++|+.||+++++.++... ....|.++.+.|.+ .+++
T Consensus 531 GnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 531 GNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred CcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceee
Confidence 9999999875 5677899999999999999999999999999999999999998777665 45678899887754 5778
Q ss_pred EeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 374 ~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
|-..+.+.+....... -..+.-|.+-|.++.|.+.|+++++.+.|+-+..|...-|..+...+ ..++|.++..|-|..
T Consensus 610 GMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 610 GMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDK 687 (705)
T ss_pred ecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCce
Confidence 8888888877765443 34566689999999999999999999999999999999998887776 556799999999877
Q ss_pred CCCCCCccEEEEeecCceEEEE
Q 010754 454 GTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 454 ~~~~~~~~l~las~~~~~~iw~ 475 (502)
+++++|++....+|-
T Consensus 688 -------yIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 688 -------YIVTGSGDKKATVYE 702 (705)
T ss_pred -------EEEecCCCcceEEEE
Confidence 889999888777764
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=202.37 Aligned_cols=222 Identities=23% Similarity=0.377 Sum_probs=192.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 305 (502)
-+.+++.+..+..+++|+.... ..|...|.++..-..++.+++|+.|..+.+|....
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~~~-----------------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k 59 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTREF-----------------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK 59 (825)
T ss_pred cccccceeeeeeccccccchhh-----------------------hhhhhhhceeeeeccceeeccCCCceeeccccccC
Confidence 3445556666677888886543 23456677887777889999999999999998653
Q ss_pred -ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEE
Q 010754 306 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVC 383 (502)
Q Consensus 306 -~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~ 383 (502)
.....+.+|.++|.++.|++....|++|+.+|+|++||+...+.++++.+|...+..+.|+|-.. ++.++.|..+.+|
T Consensus 60 p~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 60 PNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIW 139 (825)
T ss_pred CchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceeh
Confidence 34456899999999999999999999999999999999999999999999999999999998665 5678899999999
Q ss_pred EcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEE
Q 010754 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (502)
Q Consensus 384 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~ 463 (502)
|++...+...+.+|...+..+.|+|+|+++++|++|.+++|||...|+.+..|..|.+.+.++.|+|..- .+-
T Consensus 140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~-------Lla 212 (825)
T KOG0267|consen 140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV-------LLA 212 (825)
T ss_pred hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhh-------hhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 445
Q ss_pred EEeecCceEEEEee
Q 010754 464 LARLIPYFLYWICS 477 (502)
Q Consensus 464 las~~~~~~iw~~~ 477 (502)
.++.|..+++|+..
T Consensus 213 ~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLE 226 (825)
T ss_pred cCCCCceeeeeccc
Confidence 56677889999754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=186.25 Aligned_cols=241 Identities=17% Similarity=0.311 Sum_probs=196.4
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.|..-|.++..+...+++.||+. |.|+|||+...... ..+..+..+ .....|.++...|||+.|++|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-------~PvsqLdcl-----~rdnyiRSckL~pdgrtLivG 483 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-------SPVSQLDCL-----NRDNYIRSCKLLPDGRTLIVG 483 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-------Ccccccccc-----CcccceeeeEecCCCceEEec
Confidence 68888999999998999999987 88999999764211 111111111 124569999999999999999
Q ss_pred ECCCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-
Q 010754 293 SYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN- 368 (502)
Q Consensus 293 ~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~- 368 (502)
++-.++.|||+... ....+....-..++++.+||.+..++|+.||.|.|||+.....++.|.+|...+.+|..+++
T Consensus 484 GeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 484 GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred cccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC
Confidence 99999999997643 23344444556889999999999999999999999999999999999999999999999765
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEE
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~ 448 (502)
..+.+|+-|++|+.||+++++.+.... ..+.|.++.++|++.+||.|-.++.+.|-...... -..+..|.+-|.++.|
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKF 641 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEe
Confidence 559999999999999999998766554 45789999999999999999999998888765433 3456679999999999
Q ss_pred ccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 449 SPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.+.|. +++..+-|+.+..|.
T Consensus 642 a~cGk-------wfvStGkDnlLnawr 661 (705)
T KOG0639|consen 642 AYCGK-------WFVSTGKDNLLNAWR 661 (705)
T ss_pred cccCc-------eeeecCchhhhhhcc
Confidence 99998 667777777778884
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=170.82 Aligned_cols=195 Identities=23% Similarity=0.448 Sum_probs=159.2
Q ss_pred CCCeEEEEECC-CCCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce
Q 010754 274 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (502)
Q Consensus 274 ~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 349 (502)
...|.+|+||| ...++++|+.||+||+|+++.. .-.....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q- 105 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ- 105 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-
Confidence 56799999999 5667779999999999998742 223456789999999999999999999999999999999995
Q ss_pred EEEEeeccCCeEEEEecCCC---EEEEEeCCCeEEEEEcCCCcceEEEe-------------------------------
Q 010754 350 KQQFEFHSGPTLDVDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFA------------------------------- 395 (502)
Q Consensus 350 ~~~~~~~~~~v~~v~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~------------------------------- 395 (502)
...+..|.++|..+.|.+.. .+++|+.|.+|+.||.+...++.++.
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n 185 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLEN 185 (347)
T ss_pred eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCC
Confidence 56678899999999996543 58999999999999999877664432
Q ss_pred ------cCC----CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEeccCCC---------cEEEEEEccCCCC
Q 010754 396 ------GHQ----GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSK---------EIYTIRWSPTGSG 454 (502)
Q Consensus 396 ------~h~----~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~--~~~~~~~~h~~---------~i~~v~~sp~g~~ 454 (502)
.+. -.+.||+..++....|.|+-+|.+-|..+..+ +.-..|+.|.. .|++|+|+|.-.
T Consensus 186 ~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg- 264 (347)
T KOG0647|consen 186 PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG- 264 (347)
T ss_pred CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccc-
Confidence 111 24778888888888899999999999998776 33345555652 478899999765
Q ss_pred CCCCCccEEEEeecCceEEEEe
Q 010754 455 TNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 455 ~~~~~~~l~las~~~~~~iw~~ 476 (502)
.|+++++||.+.+|+-
T Consensus 265 ------tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 265 ------TLVTAGSDGTFSFWDK 280 (347)
T ss_pred ------eEEEecCCceEEEecc
Confidence 7899999999999963
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=168.57 Aligned_cols=204 Identities=19% Similarity=0.313 Sum_probs=167.4
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 204 ~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
.++-++.+.||...|..++.+|-+..+++++.|++|++||+...++...+. ...-..++|.
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-------------------~~~~pi~AfD 149 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-------------------LSGRPIAAFD 149 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe-------------------cCCCcceeEC
Confidence 456689999999999999999999999999999999999998665432111 1223467899
Q ss_pred CCCCEEEEEECCCeEEEEECC---CceEEEec---CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc
Q 010754 284 GEGTLLATGSYDGQARIWSTN---GDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~---~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
|.|-++|++...+.|++||++ .+...++. ........|.|+|+|++|+.+...+.+++.|.-+|..+.++..+.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~ 229 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYP 229 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeecc
Confidence 999999999988899999976 33333333 336678999999999999999999999999999999999998866
Q ss_pred CCe---EEEEecCCCEEE-EEeCCCeEEEEEcCCCcceEEEec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 358 GPT---LDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 358 ~~v---~~v~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~-h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
..- ...+|.|++.|+ +|+.||+|.+|++.++..+..+.+ +.+++.++.|+|.-.+++|++. .+-+|=..
T Consensus 230 ~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 230 NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEecc
Confidence 543 678888887755 556679999999999999999998 6899999999998877777754 67788543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=187.01 Aligned_cols=253 Identities=23% Similarity=0.351 Sum_probs=200.0
Q ss_pred eeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 201 FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 201 ~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
-.+|......++||++.|.|+...|.|.+|++|+.||+|+||.+.++.++.... ....|.|+
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~------------------~d~~I~~v 447 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ------------------FDSEIRSV 447 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe------------------ecceeEEE
Confidence 345667778899999999999999999999999999999999999987643211 13469999
Q ss_pred EECCCCC--EEEEEECCCeEEE---------------------------------EECC-----CceEEEecCccCCeEE
Q 010754 281 DWNGEGT--LLATGSYDGQARI---------------------------------WSTN-----GDLKCTLSKHKGPIFS 320 (502)
Q Consensus 281 ~~s~~g~--~l~s~~~dg~i~i---------------------------------wd~~-----~~~~~~~~~~~~~v~~ 320 (502)
+|+|.+. .||++.... +.| |... ..-++....|...|..
T Consensus 448 aw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 448 AWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred EecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 9999765 444443322 333 3211 0113345568889999
Q ss_pred EEEecCCCEEEEEecC---CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecC
Q 010754 321 LKWNKKGDYLLTGSCD---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 397 (502)
Q Consensus 321 l~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h 397 (502)
+.|+..|.||++...+ ..|.|+++.......-|....+.+.++.|+|..-.+..+....|+|||+.....++++...
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg 606 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTG 606 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcC
Confidence 9999999999987664 4799999987776666777788999999999887777778899999999998888888777
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 398 ~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
...|..++.+|.|.-|+.|+.|+.+..+|+.-. ++.++++.|...+++|+||+.-. .+.+|+-|+++.|+..
T Consensus 607 ~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-------Lfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 607 SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-------LFASGSDDGTVIVFHG 679 (733)
T ss_pred CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccc-------eeeeecCCCcEEEEee
Confidence 788999999999999999999999999999754 67788889999999999999987 3444445577777754
Q ss_pred eeE
Q 010754 477 SIY 479 (502)
Q Consensus 477 ~~~ 479 (502)
.++
T Consensus 680 ~VY 682 (733)
T KOG0650|consen 680 MVY 682 (733)
T ss_pred eee
Confidence 444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=169.29 Aligned_cols=197 Identities=22% Similarity=0.398 Sum_probs=161.1
Q ss_pred cCCCCeEEEEECC-CCCEEEEEECCCeEEEEECCCce-----------EE-----EecCccCCeEEEEEec-CCCEEEEE
Q 010754 272 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDL-----------KC-----TLSKHKGPIFSLKWNK-KGDYLLTG 333 (502)
Q Consensus 272 ~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~-----------~~-----~~~~~~~~v~~l~~~~-~~~~l~s~ 333 (502)
.|.+.|.++...+ .|+++++|+.||.|.+||++... ++ .-.+|+-.|.++.|-| +.-.|.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4567799999887 78999999999999999976321 11 1235888999999999 55688899
Q ss_pred ecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC----CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC
Q 010754 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 409 (502)
Q Consensus 334 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~ 409 (502)
+.|.++++||..+.+....|. -.+.|..-+|+| ...+++|..+-.|+++|+.+|....++.||.+.|.++.|+|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred cccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 999999999999988777766 345666667765 334778888889999999999999999999999999999998
Q ss_pred CCE-EEEEeCCCcEEEEECCCC-eeEEEe--------------ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEE
Q 010754 410 GSL-LASCSDDVTAKIWNMKQD-KYVHDL--------------REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLY 473 (502)
Q Consensus 410 g~~-las~s~dg~i~iwd~~~~-~~~~~~--------------~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~i 473 (502)
..+ ||+|+.||.|++||++.. .|+..+ .+|.+.+.+++|+.+|. ++.+.+.+..+++
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-------~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-------YLASCGTDDRIRV 272 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-------hhhhccCccceEE
Confidence 775 789999999999999754 233222 25778899999999998 7888889999999
Q ss_pred EEe
Q 010754 474 WIC 476 (502)
Q Consensus 474 w~~ 476 (502)
|.-
T Consensus 273 wn~ 275 (397)
T KOG4283|consen 273 WNM 275 (397)
T ss_pred eec
Confidence 963
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=177.83 Aligned_cols=254 Identities=22% Similarity=0.348 Sum_probs=180.2
Q ss_pred eEEEEEcC-------CCCeEEEEeCCCcEEEEecCCCCccC-CCCCCCceeEE---EeeecCccccCCCCeEEEEECCC-
Q 010754 218 VCACAWSP-------AGSLLASGSGDSTARIWTIADGTSNG-GAQNGPLNVLV---LKHVKGRTNEKSKDVTTLDWNGE- 285 (502)
Q Consensus 218 V~~~~~~p-------~~~~l~sgs~dg~v~iw~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~v~~l~~s~~- 285 (502)
-.|++|.- .|+++|.|+.|..|.|||+.-...+. .+..+...... .........+|+..|.+|+|+..
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 36777753 25799999999999999986432111 00000000000 00011123367888999999985
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecC-CCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
.+.||+|+.|.+|++||+. +++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.|........-...+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4589999999999999987 5777788889999999999995 4789999999999999998543333333356678899
Q ss_pred EecC--CCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCee--EEEec
Q 010754 364 DWRN--NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKY--VHDLR 437 (502)
Q Consensus 364 ~~~~--~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~~~--~~~~~ 437 (502)
.|.+ ...|+++..||+++-+|+|+. +++.++.+|.++|.+|++++. ..+|++++.|++|++|++..... +..-.
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~ 415 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHS 415 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccc
Confidence 9965 456889999999999999986 899999999999999999985 45789999999999999864433 21111
Q ss_pred cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 438 EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 438 ~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
..-+...|.++.|+-. ..+..++.-+.+++|+..
T Consensus 416 ~~~~rl~c~~~~~~~a------~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 416 FKLGRLHCFALDPDVA------FTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccceeecccCCCcc------eEEEecCccceEEEeecc
Confidence 1112356667777755 122333333458888753
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=175.66 Aligned_cols=194 Identities=21% Similarity=0.268 Sum_probs=170.3
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC-------
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK------- 345 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~------- 345 (502)
.+.|.+++-+|+|.+|+.|+..|.|++|.+. |.++..+..|-..|+|+.|+.||.+|++|+.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4679999999999999999999999999987 56777888999999999999999999999999999999762
Q ss_pred --CCceEEEEeeccCCeEEEEecC---CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 346 --TEEWKQQFEFHSGPTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 346 --~~~~~~~~~~~~~~v~~v~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg 420 (502)
+-++++.|..|.-+|+++...+ +.++++++.|.++++||+..+..+.++. ....+.+++.+|-++.+..|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 3457788889999999998854 4679999999999999999999888876 567899999999999999999999
Q ss_pred cEEEEECCCC----------------eeEEEeccCCC--cEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 421 TAKIWNMKQD----------------KYVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 421 ~i~iwd~~~~----------------~~~~~~~~h~~--~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.|.+.++.+. ..+..+.+|.. +|++++.+-||+ .|+.|+.|+.+++|+
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-------lLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-------LLLSGDEDGKVCVWD 305 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-------EEEeeCCCCCEEEEe
Confidence 9999887432 34566778987 999999999999 777777789999995
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=185.15 Aligned_cols=250 Identities=24% Similarity=0.356 Sum_probs=183.3
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
..+.....|...|..+.|-|....|++++.|.++++||+..+.+... ....+|...|.+++|.|.
T Consensus 91 ~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~---------------~~~~GH~~SvkS~cf~~~ 155 (720)
T KOG0321|consen 91 RQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG---------------RLNLGHTGSVKSECFMPT 155 (720)
T ss_pred hhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc---------------eeecccccccchhhhccC
Confidence 34566678999999999999778999999999999999998764321 124567889999999995
Q ss_pred C-CEEEEEECCCeEEEEECCCceE----------------------------EEecCccCCeEE---EEEecCCCEEEEE
Q 010754 286 G-TLLATGSYDGQARIWSTNGDLK----------------------------CTLSKHKGPIFS---LKWNKKGDYLLTG 333 (502)
Q Consensus 286 g-~~l~s~~~dg~i~iwd~~~~~~----------------------------~~~~~~~~~v~~---l~~~~~~~~l~s~ 333 (502)
. ..|++|+.||.|.|||++...+ .....+...|.+ +.+..|...|+++
T Consensus 156 n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSa 235 (720)
T KOG0321|consen 156 NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASA 235 (720)
T ss_pred CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeec
Confidence 4 5889999999999999642110 011123334554 5566788899988
Q ss_pred ec-CCeEEEEEcCCCceEEE--------Eeec---cCCeEEEEe-cCCCEEEEEeCCCeEEEEEcCCC--cceEEEecCC
Q 010754 334 SC-DKTAIVWDVKTEEWKQQ--------FEFH---SGPTLDVDW-RNNVSFATSSTDNMIYVCKIGEN--RPIKTFAGHQ 398 (502)
Q Consensus 334 ~~-d~~i~~wd~~~~~~~~~--------~~~~---~~~v~~v~~-~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~h~ 398 (502)
+. |+.|+|||++....... +..+ .-.+.++.. +.+..+.+.+.|+.|++|++..- .++..+.++.
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 87 99999999987653322 1112 123444444 34556666677999999999865 3566666553
Q ss_pred Cc--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 399 GE--VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 399 ~~--i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.. -..-..+|++.+|++|+.|...++|.+.+... ...+.+|.-.|++++|.|... ..+++++.|..+++|.
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~------t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT------TPVATCSDDFRVKIWR 389 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC------CCceeeccCcceEEEe
Confidence 22 12234789999999999999999999987653 455669999999999998654 3568888889999997
Q ss_pred e
Q 010754 476 C 476 (502)
Q Consensus 476 ~ 476 (502)
.
T Consensus 390 l 390 (720)
T KOG0321|consen 390 L 390 (720)
T ss_pred c
Confidence 5
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=174.97 Aligned_cols=248 Identities=12% Similarity=0.199 Sum_probs=196.4
Q ss_pred eEEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
++.+.--..+|.+++|.|+|. .+++++.-..+..||+.+.+... ++.+.+. ....+.....++++
T Consensus 250 lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k-----------~~~~~g~---e~~~~e~FeVShd~ 315 (514)
T KOG2055|consen 250 LQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK-----------LKPPYGV---EEKSMERFEVSHDS 315 (514)
T ss_pred heeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc-----------ccCCCCc---ccchhheeEecCCC
Confidence 444444567899999999988 88888888999999998876432 1111111 13457888899999
Q ss_pred CEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC-CeEEEEe
Q 010754 287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PTLDVDW 365 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~v~~ 365 (502)
++|+..+..|.|.+....++.........+.|..++|+.+++.|++++.+|.|.+||++...+++.+....+ .-+.++.
T Consensus 316 ~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~ 395 (514)
T KOG2055|consen 316 NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCI 395 (514)
T ss_pred CeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeee
Confidence 999999999999999877665555556778899999999999999999999999999999999988875433 2344554
Q ss_pred cC-CCEEEEEeCCCeEEEEEcCC------CcceEEEecCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEe
Q 010754 366 RN-NVSFATSSTDNMIYVCKIGE------NRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 366 ~~-~~~~~~~~~d~~i~i~d~~~------~~~~~~~~~h~~~i~~l~~sp~g~~las~s~--dg~i~iwd~~~~~~~~~~ 436 (502)
+. ...|++|+..|.|.|||..+ .+|+.++..-...|+.+.|+|++++||.||. +..+|+-.+.+......+
T Consensus 396 S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNf 475 (514)
T KOG2055|consen 396 SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNF 475 (514)
T ss_pred cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccC
Confidence 44 45689999999999999653 4678877777788999999999999998886 678999999887777666
Q ss_pred ccCC---CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 437 REHS---KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 437 ~~h~---~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.... +.|+||+|||.|. .+.+|...+.+.+|-+
T Consensus 476 P~~n~~vg~vtc~aFSP~sG-------~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSG-------YLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCCCcccceEEEEecCCCc-------eEEeecCCCceeeEee
Confidence 5333 4589999999988 7778888888888864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=172.67 Aligned_cols=242 Identities=12% Similarity=0.096 Sum_probs=173.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..+.+|.. +.+++|+|++..+ ++++.++.|++||+.+++... .+.. ...+..++|+|+
T Consensus 23 ~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-------------~~~~-----~~~~~~~~~~~~ 83 (300)
T TIGR03866 23 VTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG-------------TLPS-----GPDPELFALHPN 83 (300)
T ss_pred eEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-------------eccC-----CCCccEEEECCC
Confidence 3455665543 6789999999866 667788999999988765321 1110 123567899999
Q ss_pred CCEEEEE-ECCCeEEEEECCCce-EEEecCccCCeEEEEEecCCCEEEEEecCC-eEEEEEcCCCceEEEEeeccCCeEE
Q 010754 286 GTLLATG-SYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-TAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 286 g~~l~s~-~~dg~i~iwd~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
++.++++ +.++.|++||+.... +..+. +...+.+++|+|++.++++++.++ .+.+||..+++....+.. ......
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~ 161 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRF 161 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccE
Confidence 9977655 568999999987543 33333 334568899999999999888765 567789988877655433 334567
Q ss_pred EEecCCCE-EE-EEeCCCeEEEEEcCCCcceEEEecCCC-------cEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee
Q 010754 363 VDWRNNVS-FA-TSSTDNMIYVCKIGENRPIKTFAGHQG-------EVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 363 v~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~~h~~-------~i~~l~~sp~g~~las-~s~dg~i~iwd~~~~~~ 432 (502)
+.|++++. ++ ++..++.|++||+.+++.+..+..+.. ....++|+|++++++. .+.++.|.+||+.+++.
T Consensus 162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV 241 (300)
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 88877654 43 444689999999999887776653311 2356889999998554 45567899999999888
Q ss_pred EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEee
Q 010754 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWICS 477 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~~ 477 (502)
+..+. +...+.+++|+|+|. .++++. .++.+.+|+..
T Consensus 242 ~~~~~-~~~~~~~~~~~~~g~-------~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 242 LDYLL-VGQRVWQLAFTPDEK-------YLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EEEEE-eCCCcceEEECCCCC-------EEEEEcCCCCeEEEEECC
Confidence 76654 445799999999998 555543 47889999864
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-22 Score=200.53 Aligned_cols=244 Identities=23% Similarity=0.397 Sum_probs=192.9
Q ss_pred CceEEEEEcCCCCe----EEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC-CEEE
Q 010754 216 SEVCACAWSPAGSL----LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLA 290 (502)
Q Consensus 216 ~~V~~~~~~p~~~~----l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g-~~l~ 290 (502)
..-+.++|.+.+.. ||.|..||.|.+||...-.. +.. .........|.+.|..+.|++.+ ++||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----~~~------~~~la~~~~h~G~V~gLDfN~~q~nlLA 133 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----NAS------EEVLATKSKHTGPVLGLDFNPFQGNLLA 133 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc-----Ccc------hHHHhhhcccCCceeeeeccccCCceee
Confidence 34568999997654 99999999999999765210 000 11334456788999999999965 4999
Q ss_pred EEECCCeEEEEECCCceE-EEe--cCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEeeccC--CeEEEE
Q 010754 291 TGSYDGQARIWSTNGDLK-CTL--SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTLDVD 364 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~~-~~~--~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~v~ 364 (502)
+|+.||.|.|||++.... ... ....+.|.+++|+..- ..|++++.+|.+.|||++..+.+..+..+.+ .+..+.
T Consensus 134 SGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 134 SGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLA 213 (1049)
T ss_pred ccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeee
Confidence 999999999999875221 111 2245679999999744 5777889999999999999888777766554 477899
Q ss_pred ecCCC--EEEEEeCCC---eEEEEEcCCC-cceEEEecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 365 WRNNV--SFATSSTDN---MIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 365 ~~~~~--~~~~~~~d~---~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
|+|+. .+++++.|. .|.+||+|.. .+++++.+|...|.++.|++.+ .+|+|++.|+.|.+|+.++++.+..+.
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 98875 477776655 5899999865 5889999999999999999977 899999999999999999999999999
Q ss_pred cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 438 EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 438 ~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.....+..+.|+|... ..+.+++.++.+.|+..
T Consensus 294 ~~~nW~fdv~w~pr~P------~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNP------SVMAAASFDGKISIYSL 326 (1049)
T ss_pred CCCcceeeeeecCCCc------chhhhheeccceeeeee
Confidence 8888999999999877 24466777787777753
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-22 Score=175.10 Aligned_cols=200 Identities=17% Similarity=0.326 Sum_probs=162.8
Q ss_pred eecCccccCCCCeEEEEECCCC-CEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEE
Q 010754 265 HVKGRTNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342 (502)
Q Consensus 265 ~~~~~~~~~~~~v~~l~~s~~g-~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~w 342 (502)
.+.+...+|...|.|++=+|.. ..+++|+.||.|+|||+.. .+..++..|.+.|..|++.. ..+++++.|++|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 3455567788899999999976 7899999999999999875 56778999999999999986 678899999999998
Q ss_pred EcCCC--------------------------------------ceEEEEeeccCCeEEEEecCC--CEEEEEeCCCeEEE
Q 010754 343 DVKTE--------------------------------------EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYV 382 (502)
Q Consensus 343 d~~~~--------------------------------------~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~d~~i~i 382 (502)
-+... .+++.+......+.++.|.|. ..|++|+.|+.|.+
T Consensus 135 k~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 135 KIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL 214 (433)
T ss_pred eccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence 64321 122222223334556666554 34778889999999
Q ss_pred EEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccCCCcEEEEEEccCCCCCCCCCcc
Q 010754 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 383 ~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~ 461 (502)
||++++.|++... -.-.-+.|+|+|.+-.+.+|++|..++.+|++.- .++...++|.+.|.++.|||.|+ .
T Consensus 215 yD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~-------E 286 (433)
T KOG0268|consen 215 YDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQ-------E 286 (433)
T ss_pred EecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcc-------h
Confidence 9999999988775 3455678999998888999999999999999864 46677889999999999999999 8
Q ss_pred EEEEeecCceEEE
Q 010754 462 LILARLIPYFLYW 474 (502)
Q Consensus 462 l~las~~~~~~iw 474 (502)
+++||.|.+++|+
T Consensus 287 fvsgsyDksIRIf 299 (433)
T KOG0268|consen 287 FVSGSYDKSIRIF 299 (433)
T ss_pred hccccccceEEEe
Confidence 9999999999999
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-21 Score=174.66 Aligned_cols=198 Identities=23% Similarity=0.377 Sum_probs=162.6
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
...+|.||++.|+++.|......+++|+.|.+|++||+.+..+...... ...+..|..+ .
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~------------------~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP------------------GSQCNDIVCS--I 312 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc------------------cccccceEec--c
Confidence 3578999999999999998777799999999999999998665432211 1234444444 5
Q ss_pred CEEEEEECCCeEEEEECCCc-eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec----cCCeE
Q 010754 287 TLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----SGPTL 361 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~~~v~ 361 (502)
..+++|-.|+.|++||.++. ....... .+.|+++..++++..+++++.|.++.+.|+++....+.+... ....+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeec-CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 57889999999999997754 4444444 459999999999999999999999999999999988887642 23477
Q ss_pred EEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCc--EEEEEEcCCCCEEEEEeCCCcEEEE
Q 010754 362 DVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 362 ~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~--i~~l~~sp~g~~las~s~dg~i~iw 425 (502)
.+.|+|++. +++|+.||.|+||++.+++....+...... |++++|+|.|..|++++.++.+.+|
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 888988655 778899999999999999998888765554 9999999999999999999999999
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-19 Score=168.57 Aligned_cols=231 Identities=19% Similarity=0.310 Sum_probs=183.3
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
+.-|.|++|.++|. ++||..+|.|.||+..+.+. ......|.+.|.+++.-.+|.+|- |+.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-----------------~k~~~aH~ggv~~L~~lr~GtllS-GgK 306 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-----------------SKQVHAHDGGVFSLCMLRDGTLLS-GGK 306 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-----------------EeEeeecCCceEEEEEecCccEee-cCc
Confidence 36799999999987 78999999999999755431 111126788999999999997665 999
Q ss_pred CCeEEEEECCC-------------c----------------------------eEEEecCccCCeEEEEEecCCCEEEEE
Q 010754 295 DGQARIWSTNG-------------D----------------------------LKCTLSKHKGPIFSLKWNKKGDYLLTG 333 (502)
Q Consensus 295 dg~i~iwd~~~-------------~----------------------------~~~~~~~~~~~v~~l~~~~~~~~l~s~ 333 (502)
|..|..||-+- . ......+|....+.++.+|+.+.++++
T Consensus 307 DRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~ 386 (626)
T KOG2106|consen 307 DRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTC 386 (626)
T ss_pred cceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeec
Confidence 99999998310 0 011233577888999999999999999
Q ss_pred ecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEE
Q 010754 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (502)
Q Consensus 334 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~l 413 (502)
+.|+.+++|+ ..++..+. ....++.++.|+|.+.++.|...|...+.|..+...+..-.. ..++++++|+|+|.+|
T Consensus 387 gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 387 GQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFL 462 (626)
T ss_pred cCcceEEEcc--CCceeEEE-EecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEE
Confidence 9999999999 34443332 356688999999999999999999999999999665554444 8899999999999999
Q ss_pred EEEeCCCcEEEEECCCC-eeEEEec-cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 414 ASCSDDVTAKIWNMKQD-KYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 414 as~s~dg~i~iwd~~~~-~~~~~~~-~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
|.|+.|+.|+||.+... ....... .|.++|+.+.||+|++ .++.-|.|..+.+|.
T Consensus 463 Avgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~-------~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQ-------FLVSNSGDYEILYWK 519 (626)
T ss_pred EEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCc-------eEEeccCceEEEEEc
Confidence 99999999999998653 3333332 3448999999999998 777778888889993
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=173.51 Aligned_cols=244 Identities=16% Similarity=0.283 Sum_probs=196.7
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
.+.+.--..+|.++|++.+.+.||.+-.||.|.||++..+=. ....+.+ +....|.+++|++. .
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~------------~~~vi~g---~~drsIE~L~W~e~-~ 81 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF------------LEPVIHG---PEDRSIESLAWAEG-G 81 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCce------------eeEEEec---CCCCceeeEEEccC-C
Confidence 344555568899999999999999999999999999987422 1111222 34567999999954 5
Q ss_pred EEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE--EEeeccCCeEEEE
Q 010754 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ--QFEFHSGPTLDVD 364 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~v~ 364 (502)
.|++.+.+|.|.-||+. .+.........++|++++.+|.+..++.|+.||.+..++...+.... .+....+.+.++.
T Consensus 82 RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 67788889999999975 57777888889999999999999999999999988888887776543 3444668899999
Q ss_pred ecCCCE-EEEEeCCCeEEEEEcCCCcceEEEec--------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 365 WRNNVS-FATSSTDNMIYVCKIGENRPIKTFAG--------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 365 ~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~--------h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
|.+... +++|+.||.|++||..++..+..... ...-|.++.|-.+ ..|++|..-|+|.+||...+.++..
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhh
Confidence 988776 99999999999999999887662211 1223677777644 4789999999999999999999999
Q ss_pred eccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 436 ~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
++.|.+.|.+++-.+++. +++.|+.|+.+.-+.
T Consensus 241 ~~~h~adVl~Lav~~~~d-------~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 241 HSCHDADVLALAVADNED-------RVFSAGVDPKIIQYS 273 (691)
T ss_pred hhhhhcceeEEEEcCCCC-------eEEEccCCCceEEEE
Confidence 999999999999999987 788888888765553
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=177.87 Aligned_cols=218 Identities=17% Similarity=0.237 Sum_probs=179.7
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
.-+|++......++++|+..+.|+|||+.... +......|...|+++.++....+||+++..|
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl-----------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gG 143 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKL-----------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGG 143 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHH-----------------HhhhccCCcceeEEEEecCCcceeEEeccCC
Confidence 34566655566899999999999999998432 2233455678899999999999999999999
Q ss_pred eEEEEECCCceEEEecCcc--CCeEEEEEecCCCE-EEEEecCCeEEEEEcCCCceEEEE-eeccCCeEEEEecCCC--E
Q 010754 297 QARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNV--S 370 (502)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~--~~v~~l~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~--~ 370 (502)
.|.|..+..+...+...|. ..|.-+.|+|..++ |.+++.+|.|.+||+....++..+ ..|..+...|||+|.+ .
T Consensus 144 diiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 144 DIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccce
Confidence 9999998876665554444 34668999997765 457889999999999887766554 4689999999997754 5
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccCCCcEEEEEEc
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHSKEIYTIRWS 449 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~~~h~~~i~~v~~s 449 (502)
|++.+.|..|++||++.......+. ...+.+.++|+++|.+|+.|+..|.|..||++.. .++..+.+|...|++|+|-
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred EEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEee
Confidence 8889999999999999887777765 5678999999999999999999999999999864 5788888999999999999
Q ss_pred cCC
Q 010754 450 PTG 452 (502)
Q Consensus 450 p~g 452 (502)
|..
T Consensus 303 ~s~ 305 (673)
T KOG4378|consen 303 PSP 305 (673)
T ss_pred ecc
Confidence 874
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=170.77 Aligned_cols=223 Identities=14% Similarity=0.221 Sum_probs=180.2
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC-EEEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 293 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~-~l~s~~ 293 (502)
.+.|+++.|+|...+|++|+.|++++||.+...... . +.... -...+|.+.+|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~-----lqS~~---------l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-K-----LQSIH---------LEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-h-----heeee---------eccCccceeeecCCCceEEEecc
Confidence 478999999999999999999999999998764311 0 11111 1135799999999999 899999
Q ss_pred CCCeEEEEECCCceEEEec---Cc-cCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-C
Q 010754 294 YDGQARIWSTNGDLKCTLS---KH-KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 368 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~---~~-~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~ 368 (502)
.....+.||+....+..+. ++ ...+.....+|++++|+..+..|.|.+....+++.+.++. ..+.+.+++|+. +
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSds 356 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDS 356 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCC
Confidence 9999999998765444332 23 2356778889999999999999999999999999998887 456789999955 4
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEecCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCC------CeeEEEeccCCC
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------DKYVHDLREHSK 441 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~i~~l~~sp~g~~las~s~dg~i~iwd~~~------~~~~~~~~~h~~ 441 (502)
..+++++.+|.|++||++...++.+|.-..+ .-++++.+++|.|||+||..|.|.|||.++ .+++..+..-..
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt 436 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTT 436 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhe
Confidence 5588888999999999999999988863322 245678889999999999999999999653 466777776777
Q ss_pred cEEEEEEccCCC
Q 010754 442 EIYTIRWSPTGS 453 (502)
Q Consensus 442 ~i~~v~~sp~g~ 453 (502)
.|+++.|+||++
T Consensus 437 ~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 437 AITSLQFNHDAQ 448 (514)
T ss_pred eeeeeeeCcchh
Confidence 899999999998
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=179.51 Aligned_cols=250 Identities=21% Similarity=0.357 Sum_probs=199.5
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..+.||.+-|+++.|+|.+..|+++|.|.++.+|.-.+..- +-......+...+........-|+|+++.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG----------iWv~~vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG----------IWVDVVRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccc----------eEEEEEEeecccccccceeeEEEcCCCCE
Confidence 45679999999999999999999999999999998665321 11111122233344556889999999999
Q ss_pred EEEEECCCeEEEEECCC----ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC----ceEEEEeeccCCe
Q 010754 289 LATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPT 360 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~v 360 (502)
+++-++.|..++|.... .......+|...|..+.|+|.|.+|++.+.|-+-++|---.. ..+..-+.|.-.+
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 99999999999998433 233456789999999999999999999999999999864311 1222334577778
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEEcCCC--------------------------------cc-----------------
Q 010754 361 LDVDWRN-NVSFATSSTDNMIYVCKIGEN--------------------------------RP----------------- 390 (502)
Q Consensus 361 ~~v~~~~-~~~~~~~~~d~~i~i~d~~~~--------------------------------~~----------------- 390 (502)
.++.+.+ +..|++|.....+|+|+.... ++
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 9999977 777999999999999986421 00
Q ss_pred ---------------------------eEEEecCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEecc
Q 010754 391 ---------------------------IKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 391 ---------------------------~~~~~~h~~~i~~l~~sp~g~~las~s~d-----g~i~iwd~~~~~~~~~~~~ 438 (502)
++++.||...|.+++.+|+|+++||++.. ..|++|+..+...+..+.+
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 02334899999999999999999999864 3599999999999999999
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
|+-.|+.++|||||. +|+.+|.|.++.+|.
T Consensus 571 HsLTVT~l~FSpdg~-------~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGR-------YLLSVSRDRTVSLYE 600 (764)
T ss_pred cceEEEEEEECCCCc-------EEEEeecCceEEeee
Confidence 999999999999999 888999999998884
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=160.20 Aligned_cols=253 Identities=23% Similarity=0.382 Sum_probs=188.2
Q ss_pred EEeccCCCceEEEEEcC-CCCeEEEEeCC-------CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 209 TILEGHTSEVCACAWSP-AGSLLASGSGD-------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p-~~~~l~sgs~d-------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
.+|..|.+.|..++-+| +..+|+|+..+ ..+.||.++...... +...+.........+-+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S-------~~~tlE~v~~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS-------NSSTLECVASLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc-------ccchhhHhhcCCHHHhCceeeE
Confidence 45677889999999999 56677777553 247899998653211 0111111111222334579999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCceE--EEe-----cCccCCeEEEEEec--CCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 281 DWNGEGTLLATGSYDGQARIWSTNGDLK--CTL-----SKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 281 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~--~~~-----~~~~~~v~~l~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
.|.|++..+++-. |..|.+|++..... ..+ ..+....++-+|+| +++.+++. .|+++..||+++.+...
T Consensus 130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~ 207 (370)
T KOG1007|consen 130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNN 207 (370)
T ss_pred EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhc
Confidence 9999999988766 89999999864322 211 23566788899999 66776664 68999999999987766
Q ss_pred EEe-eccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 010754 352 QFE-FHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWN 426 (502)
Q Consensus 352 ~~~-~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd 426 (502)
.+. .|...+.+++|.|+.. +++|+.||.|++||.+.. .++..+.+|...|.++.|+|. .++|++|+.|..|.+|.
T Consensus 208 sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 208 SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSC 287 (370)
T ss_pred chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEe
Confidence 654 4777899999988764 899999999999999865 589999999999999999995 56888999999999997
Q ss_pred CCCC-----------------------------eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 427 MKQD-----------------------------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 427 ~~~~-----------------------------~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
..+- ..+.++..|...|++++||...+ .+.||.+-+.++-+-+
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP--------WiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP--------WIFASLSYDGRVIISS 359 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC--------eeEEEeccCceEEeec
Confidence 5321 12456778999999999999876 5777777666665544
Q ss_pred e
Q 010754 478 I 478 (502)
Q Consensus 478 ~ 478 (502)
+
T Consensus 360 V 360 (370)
T KOG1007|consen 360 V 360 (370)
T ss_pred C
Confidence 3
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=177.06 Aligned_cols=248 Identities=24% Similarity=0.300 Sum_probs=192.2
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
.+.+.+++++...|+++.-+|-=..+|.|..+|+|.|+++..++.+. . +.. ..+.|+.++|..
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~----------s---Fk~----d~g~VtslSFrt 254 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM----------S---FKQ----DWGRVTSLSFRT 254 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE----------E---EEc----cccceeEEEecc
Confidence 45578999999999999999988899999999999999999877432 1 111 136799999999
Q ss_pred CCC-EEEEEECCCeEEEEECCCceEE--EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc----eEEEEeecc
Q 010754 285 EGT-LLATGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHS 357 (502)
Q Consensus 285 ~g~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~ 357 (502)
||+ .+++|+..|.+.+||++.+... ....|.+.|..+.|.|....+++++.|+.+++|=..++. .++.-.+|.
T Consensus 255 DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 255 DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 997 5666777799999999875443 445788999999999999999999999998888443221 111111111
Q ss_pred CC------------------------------------------------------------------------------
Q 010754 358 GP------------------------------------------------------------------------------ 359 (502)
Q Consensus 358 ~~------------------------------------------------------------------------------ 359 (502)
.|
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 11
Q ss_pred ------------------------------------eEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEE---ecCCC
Q 010754 360 ------------------------------------TLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTF---AGHQG 399 (502)
Q Consensus 360 ------------------------------------v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~h~~ 399 (502)
+++++.+. ++..+.|...|.|-+|++.+|....+| ..|.+
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~ 494 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKG 494 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccC
Confidence 12222222 122345667888899999988888888 57999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----------------------------------------eEEEecc
Q 010754 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK-----------------------------------------YVHDLRE 438 (502)
Q Consensus 400 ~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~-----------------------------------------~~~~~~~ 438 (502)
+|++++.+.-++.+++++.+|.+++||.++.. .++.+.+
T Consensus 495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g 574 (910)
T KOG1539|consen 495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG 574 (910)
T ss_pred ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence 99999999999999999999999999986543 2345678
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+..|++++|||||. ++++|+.|+++++|+.
T Consensus 575 h~nritd~~FS~Dgr-------WlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGR-------WLISASMDSTIRTWDL 605 (910)
T ss_pred cccceeeeEeCCCCc-------EEEEeecCCcEEEEec
Confidence 999999999999999 9999999999999963
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=170.66 Aligned_cols=241 Identities=19% Similarity=0.254 Sum_probs=190.7
Q ss_pred ccCCCCceeeeCCC-----ceEEeccCC-CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeee
Q 010754 193 ATTSASESFEIPNS-----DVTILEGHT-SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV 266 (502)
Q Consensus 193 ~~~~~~~~~~~~~~-----~~~~l~~H~-~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 266 (502)
+....++.+++++- ...++.||. ..|-+++|+ ++..|++.+.+|.|.-||+.+.+...
T Consensus 41 AvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~--------------- 104 (691)
T KOG2048|consen 41 AVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKY--------------- 104 (691)
T ss_pred eeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeE---------------
Confidence 33334445555432 245666664 689999999 45568888899999999999876422
Q ss_pred cCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceE---EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 267 ~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
......+.|++++.+|.+..++.|+.||.+..++...+.+ ..+...++.|.+++|+|++..+++|+.||.|++||
T Consensus 105 --~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 105 --NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred --EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 1122356799999999999999999999777777665433 34556679999999999999999999999999999
Q ss_pred cCCCceEEEEee--------ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEE
Q 010754 344 VKTEEWKQQFEF--------HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 344 ~~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las 415 (502)
+.++..+..... ...-|.++.+..++.+++|..-|+|.+||...+..++.+..|.+.|.+++..+++.++++
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence 999887663221 122367788888899999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCee--E--EEeccCCCcEEEEEEccC
Q 010754 416 CSDDVTAKIWNMKQDKY--V--HDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 416 ~s~dg~i~iwd~~~~~~--~--~~~~~h~~~i~~v~~sp~ 451 (502)
++.|+.|.-+...+.+. + .....|...|.+++..++
T Consensus 263 aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN 302 (691)
T ss_pred ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc
Confidence 99999999888766533 2 222368888999998887
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=167.58 Aligned_cols=234 Identities=19% Similarity=0.325 Sum_probs=176.9
Q ss_pred EEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-C
Q 010754 209 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-G 286 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g 286 (502)
-.+.||+++|..++|+| +...||+||.|.+|.||.+..+...... ........+|...|..++|+|. .
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l----------tepvv~L~gH~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL----------TEPVVELYGHQRRVGLVQWHPTAP 144 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc----------ccceEEEeecceeEEEEeecccch
Confidence 45689999999999999 6789999999999999999987543322 1233445677889999999995 5
Q ss_pred CEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC-eEEEEe
Q 010754 287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDW 365 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~v~~ 365 (502)
+.|++++.|..|.+|++.+........|...|+++.|+.+|.+|++.+.|+.|+|||.++++.+..-..|.+. -..+.|
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raif 224 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIF 224 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEE
Confidence 6899999999999999886554444449999999999999999999999999999999999999887777663 455666
Q ss_pred cCCCEEEEEe----CCCeEEEEEcCCCc-c--eEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCee-EEEe
Q 010754 366 RNNVSFATSS----TDNMIYVCKIGENR-P--IKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY-VHDL 436 (502)
Q Consensus 366 ~~~~~~~~~~----~d~~i~i~d~~~~~-~--~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~~-~~~~ 436 (502)
..++.+++.+ .+..+-+||..+-. + ...+. ..+.|.---|+|+.+++..++ .|+.||.|.+....+ ++-+
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred eccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 5555566554 46789999976543 2 33444 234566667889988877665 599999999877653 2333
Q ss_pred cc--CCCcEEEEEEccCCC
Q 010754 437 RE--HSKEIYTIRWSPTGS 453 (502)
Q Consensus 437 ~~--h~~~i~~v~~sp~g~ 453 (502)
.. ...+=..+.|-|...
T Consensus 304 n~f~S~epQRG~g~mPKRG 322 (472)
T KOG0303|consen 304 NTFSSKEPQRGMGFMPKRG 322 (472)
T ss_pred cccccCCcccccccccccc
Confidence 21 233456677777543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.8e-21 Score=179.58 Aligned_cols=129 Identities=25% Similarity=0.371 Sum_probs=103.2
Q ss_pred ceEEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..|.+|.+.|+.+.|+| ...+|||||.|..|+||.+..+.... +. .......+..-.|-++.|+|.
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-LS----------ape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-LS----------APEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-cC----------CcceeecCCceEEEEeecccC
Confidence 5678899999999999999 57799999999999999998543211 10 011112233456899999997
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~ 346 (502)
..-|+..+..|.++|||+. ++....+.+|...|.++.|+.+|..|++++.|+.|+|||-+.
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 6666666667999999976 567788999999999999999999999999999999998753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=164.35 Aligned_cols=156 Identities=24% Similarity=0.498 Sum_probs=124.6
Q ss_pred CCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 215 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 215 ~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
..+|..+.|.+++. .||||+.|..|+||.+..+...... .. -........|...|+++.|+|+|.+||+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----~~----V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----MK----VEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----ee----EEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 46899999999765 9999999999999999876532211 11 123345567889999999999999999999
Q ss_pred CCCeEEEEECC--------C---------ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec
Q 010754 294 YDGQARIWSTN--------G---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 294 ~dg~i~iwd~~--------~---------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 356 (502)
.+|.|.+|-.. + .....+.+|...|+.++|+|+++++++++.|+.+++||+..|.....+..|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 99999999744 2 134466789999999999999999999999999999999999999999888
Q ss_pred cCCeEEEEecCCCE-EEEEeCCC
Q 010754 357 SGPTLDVDWRNNVS-FATSSTDN 378 (502)
Q Consensus 357 ~~~v~~v~~~~~~~-~~~~~~d~ 378 (502)
..-+..++|.|-+. +++-+.|.
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ccccceeecchhhhhhhhhccCc
Confidence 88888888865433 33334444
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=160.57 Aligned_cols=204 Identities=14% Similarity=0.192 Sum_probs=156.6
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCce------EEEecCccCCeEEEEEecCCCEEEE-EecCCeEEEEE
Q 010754 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWD 343 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~i~~wd 343 (502)
.+|...|++++|+.||++|++++.|+.|+||+++.-. +..-.. -+-.+.+.|.||-+-++. +-...++++|-
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~vyk 161 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLCVYK 161 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence 4678899999999999999999999999999976421 111111 124578999998876554 44566899997
Q ss_pred cCC---CceEEE---------EeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC
Q 010754 344 VKT---EEWKQQ---------FEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 410 (502)
Q Consensus 344 ~~~---~~~~~~---------~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g 410 (502)
+.. |..... -..|...+.++-...+. .+++++.|..|.+|+++ |+.+..+......-+..+.||+|
T Consensus 162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCC
Confidence 642 221111 11244455555554444 47889999999999998 88888888777777788999999
Q ss_pred CEEEEEeCCCcEEEEECC---CC-----eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEEEe
Q 010754 411 SLLASCSDDVTAKIWNMK---QD-----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKY 482 (502)
Q Consensus 411 ~~las~s~dg~i~iwd~~---~~-----~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~~~ 482 (502)
++||+++-.-.|++|.+- .| +.+..+++|.+.|..++|||+.. +.+++|-||.+++|+.++.|..
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-------r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-------RAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-------eeEEEecCCcEEEeeccceEec
Confidence 999999998899999862 22 24567889999999999999998 8899999999999999998865
Q ss_pred e
Q 010754 483 F 483 (502)
Q Consensus 483 ~ 483 (502)
.
T Consensus 314 ~ 314 (420)
T KOG2096|consen 314 G 314 (420)
T ss_pred C
Confidence 4
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-20 Score=167.30 Aligned_cols=246 Identities=17% Similarity=0.289 Sum_probs=184.2
Q ss_pred eEEeccCCCceEEEEEcCCC--CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-
Q 010754 208 VTILEGHTSEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 284 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~--~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~- 284 (502)
..+.+-|.+.|++++|+|.. +++|+|..-|.|-+||+.+..... .-......|+.+|.+|.|+|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------------d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------------DGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------------CceEEeccCCccccceEecCC
Confidence 35567789999999999953 689999999999999996322100 01122346788999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCce---EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce-EEEEeeccCCe
Q 010754 285 EGTLLATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPT 360 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v 360 (502)
+-..+++.++||+|++-|+++.. +..+......+.++.|+.+...++.+..=|...+||++++.. ...+..|...|
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccc
Confidence 45689999999999999988643 333333456678888888888888888878999999998765 55566788899
Q ss_pred EEEEecCC--CEEEEEeCCCeEEEEEcCCCc----ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC----CC
Q 010754 361 LDVDWRNN--VSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK----QD 430 (502)
Q Consensus 361 ~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~----~~ 430 (502)
..|++.|- ..+++++.|++++|||++.-. |+-....|...|.+..|||.+-.|++.+.|..|+|||.. ..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~ 405 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD 405 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC
Confidence 99999774 459999999999999998643 233344599999999999998889999999999999983 33
Q ss_pred eeEEEeccCCC------cEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 431 KYVHDLREHSK------EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 431 ~~~~~~~~h~~------~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
.+...+. |.. ......|.|+.. .++++-....|-|+
T Consensus 406 ~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~-------li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 406 EPLGTIP-HNNRTGRWLTPFKAAWDPDYN-------LIVVGRYPRPIDVF 447 (498)
T ss_pred Cccceee-ccCcccccccchhheeCCCcc-------EEEEeccCcceeEE
Confidence 3444443 321 245678999877 44444444444444
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-20 Score=177.45 Aligned_cols=199 Identities=21% Similarity=0.304 Sum_probs=165.1
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC---CCCEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG---EGTLLA 290 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~g~~l~ 290 (502)
-.-.|.+++.+|+|++||+|..-|+++||++.+-... .....|...|.|+.|+. ..++||
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~-----------------~~~eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT-----------------CFMEAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhh-----------------hheecccceeEEEeecCchhhhHhhh
Confidence 3457999999999999999999999999999875432 23345678899999985 357899
Q ss_pred EEECCCeEEEEECCC--ceEEEecCccCC-------------------------------------------------eE
Q 010754 291 TGSYDGQARIWSTNG--DLKCTLSKHKGP-------------------------------------------------IF 319 (502)
Q Consensus 291 s~~~dg~i~iwd~~~--~~~~~~~~~~~~-------------------------------------------------v~ 319 (502)
+++.|..|+|||+.. .++.++.+|... ++
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 999999999999642 233333333333 45
Q ss_pred EEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee---ccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEe
Q 010754 320 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF---HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFA 395 (502)
Q Consensus 320 ~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~ 395 (502)
.|+..|..+++++++.|+.|+|||+.+++..+.|++ |.+....+...|.+ .+++.+.|.++.++|.-+++++.++.
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 566666677899999999999999999999999986 45667777776654 57888999999999999999999999
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 396 ~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
||...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999999999999999999999999999999853
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=174.65 Aligned_cols=254 Identities=20% Similarity=0.280 Sum_probs=192.5
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
.++..|.+.|+.++|+|....|++++.||++++|++++... .....+.. ...+.+|.++|.|+++.+++..
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-----s~~~~~ep----i~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-----SAEKDVEP----ILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-----ccccceee----eEEEecccCceEEEEecCCceE
Confidence 48889999999999999999999999999999999955221 11111111 2334567899999999999999
Q ss_pred EEEEECCCeEEEEECC-----------CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee--
Q 010754 289 LATGSYDGQARIWSTN-----------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-- 355 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~-----------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-- 355 (502)
+++|+.||+|+.|++. ......+.+|.+.|+.+++++....|++|+.||++++|+...... .+|..
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK 437 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence 9999999999999542 123456789999999999999999999999999999999866555 33322
Q ss_pred ccCCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEecC-------CCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 356 HSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 356 ~~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h-------~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
..+..+.+++.... ..++...-+.-.++++.....+..+... ...++.+.++|.+.+.+++..|+.|+++|
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 22234455553322 1222222233334444444444444321 13578899999999999999999999999
Q ss_pred CCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeE
Q 010754 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIY 479 (502)
Q Consensus 427 ~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~ 479 (502)
..++++++...+|...++++++-|+|. .++.++.++.+++|.....
T Consensus 518 n~~~~~l~s~~a~~~svtslai~~ng~-------~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 518 NKTGKILHSMVAHKDSVTSLAIDPNGP-------YLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccccchheeeccceecceeecCCCc-------eEEeecCCceeehhhccch
Confidence 999999999999999999999999998 8889999999999976443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=163.03 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=161.1
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEE-eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sg-s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
..+..|.. +..++|+|+++.++++ +.|+.+++||+.+.+... .+. ....+.+++|+|+|.
T Consensus 67 ~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-------------~~~-----~~~~~~~~~~~~dg~ 127 (300)
T TIGR03866 67 GTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-------------EIP-----VGVEPEGMAVSPDGK 127 (300)
T ss_pred EeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-------------Eee-----CCCCcceEEECCCCC
Confidence 33444433 5678999999876554 568999999998754211 111 112367899999999
Q ss_pred EEEEEECCC-eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecCCeEEEEEcCCCceEEEEeeccC-------
Q 010754 288 LLATGSYDG-QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSG------- 358 (502)
Q Consensus 288 ~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~------- 358 (502)
++++++.++ .+.+||...............+.++.|+|++++|+++ ..++.|++||+.+++.+..+..+..
T Consensus 128 ~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~ 207 (300)
T TIGR03866 128 IVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAV 207 (300)
T ss_pred EEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccC
Confidence 999998775 5677897754333222233456789999999988654 4699999999999987776653321
Q ss_pred CeEEEEecCCCE--EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEE
Q 010754 359 PTLDVDWRNNVS--FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 359 ~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~-s~dg~i~iwd~~~~~~~~~ 435 (502)
....+.|++++. +++.+.++.+.+||+.+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+.+++++..
T Consensus 208 ~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 208 QPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 234677887665 3445567789999999888776554 45579999999999999886 4689999999999999999
Q ss_pred eccCCCcEEEEEEcc
Q 010754 436 LREHSKEIYTIRWSP 450 (502)
Q Consensus 436 ~~~h~~~i~~v~~sp 450 (502)
+... ...+.++++|
T Consensus 287 ~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 287 IKVG-RLPWGVVVRP 300 (300)
T ss_pred EEcc-cccceeEeCC
Confidence 9854 5569999886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-20 Score=167.82 Aligned_cols=204 Identities=24% Similarity=0.447 Sum_probs=162.4
Q ss_pred ccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEE
Q 010754 212 EGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLL 289 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l 289 (502)
.+|++.|..++|+.. .+.||+||.|.+|++||+.++++.. ....|.+.|.++.|+| ...+|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-----------------s~~~~~k~Vq~l~wh~~~p~~L 302 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-----------------SITHHGKKVQTLEWHPYEPSVL 302 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-----------------ehhhcCCceeEEEecCCCceEE
Confidence 479999999999986 6799999999999999999987532 2234678899999999 56799
Q ss_pred EEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEEec
Q 010754 290 ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~~~ 366 (502)
++|++|++|.+.|.+. ......-...+.|-.++|+|.. ..++++..||+|+-+|+|.. +++.++..|.++|.++++.
T Consensus 303 LsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n 382 (463)
T KOG0270|consen 303 LSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVN 382 (463)
T ss_pred EeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEec
Confidence 9999999999999773 1111222345789999999965 57778889999999999875 8999999999999999995
Q ss_pred C--CCEEEEEeCCCeEEEEEcCCCcceEEEecC---CCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeE
Q 010754 367 N--NVSFATSSTDNMIYVCKIGENRPIKTFAGH---QGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 367 ~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h---~~~i~~l~~sp~g~-~las~s~dg~i~iwd~~~~~~~ 433 (502)
. .+.+++++.|+.|.+|++....+-... .| -+...|.++.|+-. ++|.|+..+.++|||+.+...+
T Consensus 383 ~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 383 IQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCCcceeeccccceEEEEeecCCCCcccc-cccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 5 567999999999999999766552221 12 23466777888754 5777888889999999876654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.2e-19 Score=154.16 Aligned_cols=241 Identities=24% Similarity=0.415 Sum_probs=173.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC-------CCCCEEEE
Q 010754 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-------GEGTLLAT 291 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-------~~g~~l~s 291 (502)
..+.|+|||..|++-+.|..+.+|++...-..... ..+... ..+...+ ......|...+|- |+.+++++
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~-~~~~~~--~~~~~~r-~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA-DGPLNF--SKHLSYR-YQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCC-CCcccc--ccceeEE-eccCCEEEEEEeeeccccCCCccceeee
Confidence 46899999999999999999999999764322211 111110 0011001 1123457777875 67789999
Q ss_pred EECCCeEEEEEC-CCceEEEecC--cc---CCeEEEEEecCCCEEEEEecCCeEEEEEc-CCCceEEEE-------eecc
Q 010754 292 GSYDGQARIWST-NGDLKCTLSK--HK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEWKQQF-------EFHS 357 (502)
Q Consensus 292 ~~~dg~i~iwd~-~~~~~~~~~~--~~---~~v~~l~~~~~~~~l~s~~~d~~i~~wd~-~~~~~~~~~-------~~~~ 357 (502)
.+.+.-|++||. .++....+.. |. ..-.+++|+|+|.+|++| ..++|++||+ +.|.-...+ .+..
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999994 5666665543 22 245789999999999876 5789999999 665432211 1235
Q ss_pred CCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcC---------------------------
Q 010754 358 GPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--------------------------- 408 (502)
Q Consensus 358 ~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp--------------------------- 408 (502)
+.+.+++|+|-. .+++++-..++-||.-....++..+.+|.+.|+.++|.+
T Consensus 208 giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred ceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 567888887743 477777777777777777788888888888888777754
Q ss_pred --------------------CCCEEEEEeCCCcEEEEECCC-CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee
Q 010754 409 --------------------TGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL 467 (502)
Q Consensus 409 --------------------~g~~las~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~ 467 (502)
+|++|++|+.||.|++||+++ +..+..+..|+..++.++++|-=+ ++|++
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp---------ilats 358 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP---------ILATS 358 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccc---------eeeec
Confidence 456888888889999999887 777777888888999999999866 88888
Q ss_pred cCceEE
Q 010754 468 IPYFLY 473 (502)
Q Consensus 468 ~~~~~i 473 (502)
+|...+
T Consensus 359 sGqr~f 364 (406)
T KOG2919|consen 359 SGQRIF 364 (406)
T ss_pred cCceee
Confidence 876444
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=154.30 Aligned_cols=248 Identities=18% Similarity=0.260 Sum_probs=177.0
Q ss_pred eCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 203 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 203 ~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
+|+.++.+|++|.+.|+++.|-.+++ |.+|..-|.|++|.+.+......+. ..+...|+.+.-
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r----------------~~g~~~it~lq~ 64 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIR----------------LFGRLFITNLQS 64 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhh----------------hhccceeeceee
Confidence 35667889999999999999987776 8899999999999999865432211 123445777776
Q ss_pred CCCCCEEEEEECCCeEEEEECCCce---------------EEEec-----------------------------------
Q 010754 283 NGEGTLLATGSYDGQARIWSTNGDL---------------KCTLS----------------------------------- 312 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~~~~---------------~~~~~----------------------------------- 312 (502)
-|+ ..+.+-+.|+.+.+|++.... ...+.
T Consensus 65 ~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 65 IPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred cCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 665 456677778888888754310 00000
Q ss_pred ----CccCCeEEEEEec-CCC--EEEEEecCCeEEEEEcCCCceE----------EEEeeccCCeEEEEecC-CCEEEEE
Q 010754 313 ----KHKGPIFSLKWNK-KGD--YLLTGSCDKTAIVWDVKTEEWK----------QQFEFHSGPTLDVDWRN-NVSFATS 374 (502)
Q Consensus 313 ----~~~~~v~~l~~~~-~~~--~l~s~~~d~~i~~wd~~~~~~~----------~~~~~~~~~v~~v~~~~-~~~~~~~ 374 (502)
...+.+.+..|.. ++. .+++|-.+|.+.+||+.++..+ .....|..++++++|.+ -..=++|
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 0123355555432 233 4567888999999999998433 33345888999999954 2334667
Q ss_pred eCCCeEEEEEcCCCc----ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEcc
Q 010754 375 STDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 375 ~~d~~i~i~d~~~~~----~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp 450 (502)
+.+..+..|.+.-.. .-..+.-....|..+.+-||++.+||++.|+.||||+.++..++..++.|+..|++++|+|
T Consensus 224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC
Confidence 777888888876441 1122222345688999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEeecCceEEEE
Q 010754 451 TGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 451 ~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+.. .+.+||.|..+.+|.
T Consensus 304 d~~-------lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 304 DCE-------LMAAASKDARISLWK 321 (323)
T ss_pred CCc-------hhhhccCCceEEeee
Confidence 976 445556666666664
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=154.83 Aligned_cols=199 Identities=17% Similarity=0.405 Sum_probs=157.9
Q ss_pred ceeeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE
Q 010754 199 ESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278 (502)
Q Consensus 199 ~~~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (502)
..++++...+...-.|..++.+|+|.+ ...+++|+.||.|+.+|+.++... ....|...|.
T Consensus 38 rlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~------------------~igth~~~i~ 98 (323)
T KOG1036|consen 38 RLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED------------------QIGTHDEGIR 98 (323)
T ss_pred EEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce------------------eeccCCCceE
Confidence 345566666666677999999999996 557899999999999999987531 1234678899
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce---------
Q 010754 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW--------- 349 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~--------- 349 (502)
||.+++....+++|+.|++|++||.+.............|.++..+ |+.|++|+.|..|.+||+++...
T Consensus 99 ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l 176 (323)
T KOG1036|consen 99 CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL 176 (323)
T ss_pred EEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccc
Confidence 9999998889999999999999998865444333445578888664 67899999999999999876431
Q ss_pred ------EE---------------------------------EEeecc---------CCeEEEEecCC-CEEEEEeCCCeE
Q 010754 350 ------KQ---------------------------------QFEFHS---------GPTLDVDWRNN-VSFATSSTDNMI 380 (502)
Q Consensus 350 ------~~---------------------------------~~~~~~---------~~v~~v~~~~~-~~~~~~~~d~~i 380 (502)
+. .|+.|. -+|.+|+|+|- +.|++|+.||.|
T Consensus 177 kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V 256 (323)
T KOG1036|consen 177 KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIV 256 (323)
T ss_pred eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceE
Confidence 11 112221 15788888774 669999999999
Q ss_pred EEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 010754 381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 381 ~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~ 418 (502)
.+||+.+.+.+..|......|.+++|+.+|..||.++.
T Consensus 257 ~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 257 NIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99999999999999888888999999999999999874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=161.65 Aligned_cols=246 Identities=21% Similarity=0.240 Sum_probs=187.5
Q ss_pred ceEEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..+..|..+|.++.|+| +...+++.|.||+|++-|+++........ .......+..+.|+.+
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s---------------~~~d~~~fs~~d~~~e 290 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLS---------------LDTDNIWFSSLDFSAE 290 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhh---------------cCccceeeeeccccCC
Confidence 4678889999999999999 56789999999999999998764321111 1112345788889888
Q ss_pred CCEEEEEECCCeEEEEECC--CceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEE----EEeeccC
Q 010754 286 GTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQ----QFEFHSG 358 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~ 358 (502)
...++.|..=|...+||.+ +.....+.-|...|.+|+++|.. .+|+|++.|++++|||++...... ....|..
T Consensus 291 ~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr 370 (498)
T KOG4328|consen 291 SRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR 370 (498)
T ss_pred CccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccc
Confidence 8888888888899999966 45566677788899999999965 578899999999999998644322 3345888
Q ss_pred CeEEEEecCC-CEEEEEeCCCeEEEEEcC----CCcceEEEecCCC------cEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 359 PTLDVDWRNN-VSFATSSTDNMIYVCKIG----ENRPIKTFAGHQG------EVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 359 ~v~~v~~~~~-~~~~~~~~d~~i~i~d~~----~~~~~~~~~~h~~------~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
.|.++.|+|. +.+++.+.|..|+|||.. ...+..++. |.. ......|.|+..++++|..-..|-|+|-
T Consensus 371 sV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred eeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 9999999874 559999999999999983 444555554 432 2345689999999999999999999999
Q ss_pred CCCeeEEEeccCCC-cEEE-EEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 428 KQDKYVHDLREHSK-EIYT-IRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 428 ~~~~~~~~~~~h~~-~i~~-v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..++.+..+..... .|.+ ..|+|.+. .++|++...+++|++
T Consensus 450 ~~~q~v~el~~P~~~tI~~vn~~HP~~~--------~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 450 NGGQMVCELHDPESSTIPSVNEFHPMRD--------TLAAGGNSSGKIYVF 492 (498)
T ss_pred CCCEEeeeccCccccccccceeeccccc--------ceeccCCccceEEEE
Confidence 99998888753332 4544 57999876 355555566777754
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=149.32 Aligned_cols=230 Identities=27% Similarity=0.478 Sum_probs=171.7
Q ss_pred cCCCceEEEEEcCCC-----CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CC
Q 010754 213 GHTSEVCACAWSPAG-----SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EG 286 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~-----~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g 286 (502)
.|.-+++.+.|.|+. .+|||++ ..+|+|.+.........+ ..+ .......+..++++..|+. +-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~------~~L--~~~kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQ------SVL--NNNKNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehh------hhh--ccCcccccCCcccccccccCCc
Confidence 578899999999975 3677665 379999987432110000 001 1112334567899999997 67
Q ss_pred CEEEEEECCCeEEEEECCCc----eEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEee---ccC
Q 010754 287 TLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEF---HSG 358 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~ 358 (502)
++|.+++-|.+..|||++.. ....+..|...|+.++|...+ +.|++++.||+|++||++....-..+.. ...
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 89999999999999998753 466788999999999999865 6889999999999999998654433322 245
Q ss_pred CeEEEEecCCC--EEEEEe-CCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--
Q 010754 359 PTLDVDWRNNV--SFATSS-TDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDK-- 431 (502)
Q Consensus 359 ~v~~v~~~~~~--~~~~~~-~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~~-- 431 (502)
+...++|.+.. .+++-. ....|.|.|++.. .++..+.+|.+.|++|+|.|. ...|+||++|..+-|||+.+.-
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 78889996543 345443 4457899999865 688999999999999999996 5689999999999999986532
Q ss_pred ----eEEEeccCCCcEEEEEEccCCC
Q 010754 432 ----YVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 432 ----~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
++..+. -.+.|+.+.|+|.-.
T Consensus 324 ~~~dPilay~-a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 324 NGEDPILAYT-AGGEVNQIQWSSSQP 348 (364)
T ss_pred CCCCchhhhh-ccceeeeeeecccCC
Confidence 222333 456799999998765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=151.26 Aligned_cols=191 Identities=19% Similarity=0.277 Sum_probs=157.3
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 355 (502)
..|+.|++.|.+||+|+.||.|.|||+.+ .....+.+|..+|.+++|+++|+.|+|++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 78999999999999999999999999875 4456788999999999999999999999999999999999999998887
Q ss_pred ccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecC------CCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 356 HSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------QGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 356 ~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h------~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
..++|..+.|+|. +.++++-.+..-.+.++... .+++-.. .....+..|++.|+++++|...|.+.++|.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 5678999999774 44666555555666666542 2222111 112234468999999999999999999999
Q ss_pred CCCeeEEEeccCC-CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 428 KQDKYVHDLREHS-KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 428 ~~~~~~~~~~~h~-~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.+.+++..++-.+ ..|.++.++-.|. .+++-++|..++.+...
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~-------~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGR-------FLIINTSDRVIRTYEIS 226 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCc-------EEEEecCCceEEEEehh
Confidence 9999999998665 7899999999998 78888888989888543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8e-19 Score=163.77 Aligned_cols=228 Identities=19% Similarity=0.304 Sum_probs=171.0
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.|...|.||.|+.....+.+++.+-.++-|++.+..... ....+-.+....++.....+. -.....++.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~-~~~p~df~pt~~h~~~rs~~~---------g~~~d~~~i~ 81 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV-AKLPDDFVPTDMHLGGRSSGG---------GKGSDTLLIC 81 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhh-hhCCcccCCccccccccccCC---------CCCcceEEEE
Confidence 466778899999888777777666556666665433211 100000000000111100000 0123478889
Q ss_pred ECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEE
Q 010754 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA 372 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~ 372 (502)
+.||.+.|.+..++.......|.+.|.+-.|+|+|.-|++++.||.|++|. ++|-...++.....+|.++.|.|+..-+
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~v 160 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSI 160 (737)
T ss_pred cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCce
Confidence 999999999999998889999999999999999999999999999999998 6676666666677899999998876544
Q ss_pred EEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCC
Q 010754 373 TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (502)
Q Consensus 373 ~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g 452 (502)
.-+..+.+.|=.+.....+-.+++|.+-|.++.|++...++++|++|-..+|||. .|..+..-..|..+|++++|.|+.
T Consensus 161 l~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 161 VFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred EEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecccc
Confidence 4556677888788777777889999999999999999999999999999999995 466666777899999999999983
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-18 Score=163.49 Aligned_cols=254 Identities=19% Similarity=0.311 Sum_probs=197.3
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..+.||.+.|..++|+|.|.+|++.|.|-+-|++---..+. .-+-....+-|..+++|++|-+....
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~-------------~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ-------------EWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeeccccccc-------------ceeeecccccccccceeeehccCCce
Confidence 45679999999999999999999999999999986542111 02233444567788999999886667
Q ss_pred EEEEECCCeEEEEECC-----------C---------------------------------c------------------
Q 010754 289 LATGSYDGQARIWSTN-----------G---------------------------------D------------------ 306 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~-----------~---------------------------------~------------------ 306 (502)
+++|.....+|+|+.. + .
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 8888888899999531 0 0
Q ss_pred ---------------eEEEecCccCCeEEEEEecCCCEEEEEecCC-----eEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 307 ---------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 307 ---------------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
.+..+.+|...|++++.+|+++.+++++... .|++|+..+...++.+.+|+-.|+.+.|+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 0112335888899999999999999988653 69999999888888999999999999998
Q ss_pred CCCE-EEEEeCCCeEEEEEcCCCcc----eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEe--c
Q 010754 367 NNVS-FATSSTDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDL--R 437 (502)
Q Consensus 367 ~~~~-~~~~~~d~~i~i~d~~~~~~----~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~--~~~~~~--~ 437 (502)
|+++ +++.+.|+++.+|....... ....+.|+.-|..+.|+|++.++||+|.|.+|+||..... +++..+ .
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~ 661 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACL 661 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchh
Confidence 8765 77889999999999865421 2336789999999999999999999999999999998877 555442 2
Q ss_pred cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 438 EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 438 ~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.++.+|+.++|.|--. ......+.+|-..|.+.+|.+.
T Consensus 662 ~~~~aVTAv~~~~~~~--~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 662 KFSLAVTAVAYLPVDH--NEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccCCceeeEEeecccc--ccccceEEEEecccEEEEEecc
Confidence 5888999999998643 1111234555566888888754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-18 Score=156.19 Aligned_cols=244 Identities=20% Similarity=0.305 Sum_probs=186.4
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 204 ~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
......+..||.+....++.+|+..+++|++.|+.+++|+ +.+.. -.+. ...++.|+.|+
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~-----------wt~~-------~~d~~~~~~fh 416 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE-----------WTKI-------IEDPAECADFH 416 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee-----------EEEE-------ecCceeEeecc
Confidence 3444556789999999999999999999999999999999 22211 0111 13568999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce-EEE-EeeccCCeE
Q 010754 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQ-FEFHSGPTL 361 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~-~~~~~~~v~ 361 (502)
|.| .+|.|+..|...+.|.+............++++++|+|+|.+|+.|+.|+.|++|.+..... ... -..+..+|+
T Consensus 417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~it 495 (626)
T KOG2106|consen 417 PSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPIT 495 (626)
T ss_pred Ccc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeE
Confidence 999 99999999999999998877766666689999999999999999999999999999865432 222 233558899
Q ss_pred EEEecCCCE-EEEEeCCCeEEEEEcCCCcceE-----------------EE-ecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 362 DVDWRNNVS-FATSSTDNMIYVCKIGENRPIK-----------------TF-AGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 362 ~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~-----------------~~-~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
.++|+++.. +.+-+.|-.|..|....-+.+. .+ ..+...|+.++-+.+.+++|+|.+.|.|
T Consensus 496 hLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v 575 (626)
T KOG2106|consen 496 HLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV 575 (626)
T ss_pred EeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE
Confidence 999988766 4556778889999443222111 11 1244557777778888999999999999
Q ss_pred EEEECCC---CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 423 KIWNMKQ---DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 423 ~iwd~~~---~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
++|...- ....+.+.+|++-|++++|.-..+ .+++...|..+..|.
T Consensus 576 ~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-------~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 576 HLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-------HLISTGKDTSIMQWR 624 (626)
T ss_pred EEEccccCCCcccceeeccccceeEEEEEeeCCc-------eEEecCCCceEEEEE
Confidence 9998643 234577789999999999999877 555555666677775
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=144.97 Aligned_cols=204 Identities=20% Similarity=0.398 Sum_probs=155.1
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-----ceEEEecCccCCeEEEEEec--CCCEEEEEecCCeEEEEEc
Q 010754 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDV 344 (502)
Q Consensus 272 ~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~v~~l~~~~--~~~~l~s~~~d~~i~~wd~ 344 (502)
+|..-|+++.|.+.|+.+|+|+.|++|+|||.+. .+......|.+.|..+.|.+ -|+.+++++.|+++.||.-
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 4556699999999999999999999999999542 24446678999999999976 5799999999999999975
Q ss_pred CC-------Cc--eEEEEeeccCCeEEEEecCC---CEEEEEeCCCeEEEEEcCCCcceE------EEe-------cCCC
Q 010754 345 KT-------EE--WKQQFEFHSGPTLDVDWRNN---VSFATSSTDNMIYVCKIGENRPIK------TFA-------GHQG 399 (502)
Q Consensus 345 ~~-------~~--~~~~~~~~~~~v~~v~~~~~---~~~~~~~~d~~i~i~d~~~~~~~~------~~~-------~h~~ 399 (502)
.. .+ ...++....+.|++|.|.|. -.+++++.||.++||+......+. .+. .+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 21 12 23345557788999999875 459999999999999976543221 222 3556
Q ss_pred cEEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee
Q 010754 400 EVNCVKWDPT---GSLLASCSDD-----VTAKIWNMKQD----KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL 467 (502)
Q Consensus 400 ~i~~l~~sp~---g~~las~s~d-----g~i~iwd~~~~----~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~ 467 (502)
+..|+.|+|. ..+||.|+.+ +.++||....+ ..+.++.+|+.+|++|+|.|+-. ..-+.+.+|+.
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G---r~y~~lAvA~k 247 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG---RSYHLLAVATK 247 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC---CceeeEEEeec
Confidence 7889999974 4678888876 57899976432 34567779999999999999743 34455566666
Q ss_pred cCceEEEEeeeE
Q 010754 468 IPYFLYWICSIY 479 (502)
Q Consensus 468 ~~~~~iw~~~~~ 479 (502)
|| ++||.....
T Consensus 248 Dg-v~I~~v~~~ 258 (361)
T KOG2445|consen 248 DG-VRIFKVKVA 258 (361)
T ss_pred Cc-EEEEEEeec
Confidence 66 999876643
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=168.31 Aligned_cols=199 Identities=24% Similarity=0.402 Sum_probs=163.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc------------eEE------------------------------
Q 010754 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD------------LKC------------------------------ 309 (502)
Q Consensus 272 ~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~------------~~~------------------------------ 309 (502)
.|....+.++|.|+|++|++++.||.|++|+.... .+.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence 45566888889999888888988999999863211 000
Q ss_pred EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCC
Q 010754 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGEN 388 (502)
Q Consensus 310 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~ 388 (502)
.+....-++.+++|+-+|++++.|+.|-.|++.++........+.+|.++|.++.|.|++. +++.+.||.|++|++.++
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 1112345789999999999999999999999999999999999999999999999988655 677889999999999998
Q ss_pred cceEEEecC--------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec--cCCCcEEEEEEccCCCCCCCC
Q 010754 389 RPIKTFAGH--------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGSGTNNP 458 (502)
Q Consensus 389 ~~~~~~~~h--------~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~v~~sp~g~~~~~~ 458 (502)
....++.+- ...++.++|+|+|..|+..+.|+.|++|+...+.....++ .+.+.+..+.|+|.|.
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~----- 245 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK----- 245 (933)
T ss_pred hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc-----
Confidence 877666542 3456789999998888888999999999999999888776 3455599999999998
Q ss_pred CccEEEEeecCceEEEEee
Q 010754 459 NQQLILARLIPYFLYWICS 477 (502)
Q Consensus 459 ~~~l~las~~~~~~iw~~~ 477 (502)
+|..++.++.+.||++.
T Consensus 246 --YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 246 --YIAASTLDGQILVWNVD 262 (933)
T ss_pred --EEeeeccCCcEEEEecc
Confidence 77777778999999877
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=161.52 Aligned_cols=236 Identities=17% Similarity=0.273 Sum_probs=181.3
Q ss_pred eEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 218 VCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 218 V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
|..+.|+.... .+++.+.|..+++|.-... ... +....... ...-.|++......++++|+..+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~--~~~-------Vp~~~k~~------gd~~~Cv~~~s~S~y~~sgG~~~ 101 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGK--TPE-------VPRVRKLT------GDNAFCVACASQSLYEISGGQSG 101 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCC--CCc-------cceeeccc------cchHHHHhhhhcceeeeccCcCc
Confidence 88999997653 3445567888999974432 110 00111111 11344555555568999999999
Q ss_pred eEEEEECCCce-EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC-eEEEEecCCCE--EE
Q 010754 297 QARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVS--FA 372 (502)
Q Consensus 297 ~i~iwd~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~v~~~~~~~--~~ 372 (502)
.|+|||++.++ ...+..|.+.|+++.++-...||++++..|.|.|..+.++..-..|....+. |.-+.|++..+ +.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~ 181 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS 181 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence 99999998654 4567899999999999999999999999999999999998877777765444 55788877544 67
Q ss_pred EEeCCCeEEEEEcCCCcceEEE-ecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEcc
Q 010754 373 TSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 373 ~~~~d~~i~i~d~~~~~~~~~~-~~h~~~i~~l~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp 450 (502)
+++.+|.|.+||+....++..+ ..|..+...|+|+|.. .+|++.+.|..|.+||++..+....+. ...|..+++|++
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~ 260 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE 260 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC
Confidence 8899999999999988887655 5789999999999965 578899999999999999887777765 566899999999
Q ss_pred CCCCCCCCCccEEEEeecCceEEEEe
Q 010754 451 TGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 451 ~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+|. .|+.|+.-|.+..|+.
T Consensus 261 ~G~-------~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 261 CGT-------YLCAGNSKGELIAYDM 279 (673)
T ss_pred Cce-------EEEeecCCceEEEEec
Confidence 998 6666666677777753
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.4e-18 Score=162.07 Aligned_cols=239 Identities=17% Similarity=0.278 Sum_probs=187.2
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
..+.+|+||++.|+|++|+.+|+++|+|+.|..|.+|+-.-... ....|...|.||.|+|-
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-------------------LkYSH~D~IQCMsFNP~ 104 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-------------------LKYSHNDAIQCMSFNPI 104 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-------------------eeeccCCeeeEeecCch
Confidence 45789999999999999999999999999999999998442111 11246778999999999
Q ss_pred CCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee---ccCCeEE
Q 010754 286 GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF---HSGPTLD 362 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~ 362 (502)
...|++|+- ...-+|+...+.+.... ....|.+++|..+|.+|+.|-.+|+|.+-+- +++....+.. ...+|.+
T Consensus 105 ~h~LasCsL-sdFglWS~~qK~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiws 181 (1081)
T KOG1538|consen 105 THQLASCSL-SDFGLWSPEQKSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWS 181 (1081)
T ss_pred HHHhhhcch-hhccccChhhhhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceE
Confidence 999999886 45678987655443322 3456889999999999999999999999864 4544444443 6678999
Q ss_pred EEecCC------CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 363 VDWRNN------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 363 v~~~~~------~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
++|+|. ..+++.....++.+|.+. |+.+..-+.-.-...|+.+.|+|.++..|+.|+.+++|- +.|-.+.++
T Consensus 182 i~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv 259 (1081)
T KOG1538|consen 182 ICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV 259 (1081)
T ss_pred EEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeec
Confidence 999774 346777777777777764 333333333344567899999999999999999999997 667777777
Q ss_pred ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 437 REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 437 ~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
-.....|++++..|+++ ....|+.||++..++
T Consensus 260 g~~D~WIWtV~~~PNsQ-------~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 260 GEQDSWIWTVQAKPNSQ-------YVVVGCQDGTIACYN 291 (1081)
T ss_pred cccceeEEEEEEccCCc-------eEEEEEccCeeehhh
Confidence 77788999999999998 888999999988775
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.4e-18 Score=161.03 Aligned_cols=239 Identities=17% Similarity=0.244 Sum_probs=172.4
Q ss_pred EEEEcC---CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 220 ACAWSP---AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 220 ~~~~~p---~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
++.|++ ..++|+.+..||.|.++|....... .-.........|...|..+.|.|....|++++.|.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-----------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDs 122 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-----------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDS 122 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcc-----------hhhhhhcccccccceeEeeccCCCceeEEEccCCc
Confidence 456665 3468999999999999998764321 00011233456788999999999777899999999
Q ss_pred eEEEEECCCc-eEE--EecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCce-------EEEE------------
Q 010754 297 QARIWSTNGD-LKC--TLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-------KQQF------------ 353 (502)
Q Consensus 297 ~i~iwd~~~~-~~~--~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~-------~~~~------------ 353 (502)
++++||+.+. +.. .+.+|.+.|.++||.|.. ..|++|+.||.|.|||++-... ...+
T Consensus 123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 9999998753 333 378999999999999955 6788999999999999864320 0000
Q ss_pred --------eec----cCCeEEEEecCCCEEEEEeC-CCeEEEEEcCCCcce--------EEEecC---CCcEEEEEEcCC
Q 010754 354 --------EFH----SGPTLDVDWRNNVSFATSST-DNMIYVCKIGENRPI--------KTFAGH---QGEVNCVKWDPT 409 (502)
Q Consensus 354 --------~~~----~~~v~~v~~~~~~~~~~~~~-d~~i~i~d~~~~~~~--------~~~~~h---~~~i~~l~~sp~ 409 (502)
..+ .+.|+.+.|.++..+++++. |+.|+|||++..... ..+..| .-.++++..+..
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 001 12366788888999999887 999999999976432 223333 235788888888
Q ss_pred CCEEEEEeCCCcEEEEECCCCe--eEEEeccCCCc--EEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 410 GSLLASCSDDVTAKIWNMKQDK--YVHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 410 g~~las~s~dg~i~iwd~~~~~--~~~~~~~h~~~--i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|.+|.+.+.|+.|++||+.+-. ++..+.++-.. -..-..+||+. .++.|+.+....+|..
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-------~l~SgSsd~~ayiw~v 346 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-------SLLSGSSDEQAYIWVV 346 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCc-------eEeccCCCcceeeeee
Confidence 9998888889999999997643 33444433211 12234788887 8889999999999964
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-19 Score=179.90 Aligned_cols=210 Identities=23% Similarity=0.370 Sum_probs=168.9
Q ss_pred ceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..+..|++.|..+.|++. +++||+|+.||.|.|||+.+-+.-... ........|.+++|+..
T Consensus 108 ~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~---------------~~~~~~~eI~~lsWNrk 172 (1049)
T KOG0307|consen 108 VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP---------------GSQAPPSEIKCLSWNRK 172 (1049)
T ss_pred HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC---------------CCCCCcccceEeccchh
Confidence 35677889999999999996 569999999999999999874321100 01223567999999984
Q ss_pred -CCEEEEEECCCeEEEEECCCc-eEEEecCcc--CCeEEEEEecCC-CEEEEEecCC---eEEEEEcCCC-ceEEEEeec
Q 010754 286 -GTLLATGSYDGQARIWSTNGD-LKCTLSKHK--GPIFSLKWNKKG-DYLLTGSCDK---TAIVWDVKTE-EWKQQFEFH 356 (502)
Q Consensus 286 -g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~--~~v~~l~~~~~~-~~l~s~~~d~---~i~~wd~~~~-~~~~~~~~~ 356 (502)
...|++++.+|.+.|||++.+ .+..+..+. ..+..+.|+|+. ..|++++.|. .|.+||+|.- ..++.+.+|
T Consensus 173 vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 173 VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 457889999999999998854 344444443 357899999977 5666666654 6999999754 467778899
Q ss_pred cCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe
Q 010754 357 SGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 357 ~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~s~dg~i~iwd~~~~~ 431 (502)
...|.++.|.+. ..+++++.|+.|.+|+..+++.+..+....+.+..+.|+|... .++.++-||.|.|+.+....
T Consensus 253 ~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999654 5688999999999999999999999998889999999999766 78888999999999986544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-18 Score=148.09 Aligned_cols=239 Identities=18% Similarity=0.359 Sum_probs=175.2
Q ss_pred cCCCceEEEEEcCC----CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC-C
Q 010754 213 GHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-T 287 (502)
Q Consensus 213 ~H~~~V~~~~~~p~----~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g-~ 287 (502)
.|...-+.|+|+-+ ..+||.|+.-|.|+|.|+.+++. .....+|...|..+.++|+. +
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-----------------~~~~~ghG~sINeik~~p~~~q 149 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-----------------SKNYRGHGGSINEIKFHPDRPQ 149 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-----------------ccceeccCccchhhhcCCCCCc
Confidence 37788899999874 34889999999999999988763 33445678899999999965 6
Q ss_pred EEEEEECCCeEEEEECCCceE-EE---ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE----------
Q 010754 288 LLATGSYDGQARIWSTNGDLK-CT---LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---------- 353 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~~-~~---~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---------- 353 (502)
++++|+.|..|++|+++.... .. +.+|...|.++.|+++|.+|++++.|.++++|++...+....+
T Consensus 150 lvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 150 LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred EEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 899999999999999886543 33 3579999999999999999999999999999999743321111
Q ss_pred ------------------eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCC-c-------------ceEEEecCCCcE
Q 010754 354 ------------------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-R-------------PIKTFAGHQGEV 401 (502)
Q Consensus 354 ------------------~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~-~-------------~~~~~~~h~~~i 401 (502)
..|...|-++.|-. +.+++-+.++.|..|....- + .+..+.-....|
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~i 308 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDI 308 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccce
Confidence 11333344444443 45677788899999987321 1 123333344455
Q ss_pred EEE--EEcCCCCEEEEEeCCCcEEEEECCCCeeEE--Eec--cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 402 NCV--KWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DLR--EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 402 ~~l--~~sp~g~~las~s~dg~i~iwd~~~~~~~~--~~~--~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.-| +|+|-+++||.|...|.|++||++...+.. ++. .....|...+||.||+ .|++.+.++.+..|+
T Consensus 309 Wfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-------~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 309 WFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-------ILVLVCDDGTVWRWD 381 (385)
T ss_pred EEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-------EEEEEeCCCcEEEEE
Confidence 555 456778999999999999999998766531 221 2245699999999999 666777777766665
Q ss_pred e
Q 010754 476 C 476 (502)
Q Consensus 476 ~ 476 (502)
.
T Consensus 382 r 382 (385)
T KOG1034|consen 382 R 382 (385)
T ss_pred e
Confidence 3
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-16 Score=155.01 Aligned_cols=243 Identities=29% Similarity=0.538 Sum_probs=197.3
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCC-ccCCCCCCCceeEEEeeecCccccCCCCeEEEEE-CCCCC
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT-SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGT 287 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~g~ 287 (502)
.+.+|...|.++.+.+.+..++.++.|+.+.+|+..... .. ..+... +...+..+.+ ++++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~~~~~~ 123 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI-------------KSLEGL---HDSSVSKLALSSPDGN 123 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE-------------EEEecc---CCCceeeEEEECCCcc
Confidence 567899999999999999999999999999999988764 11 111110 0134666666 78887
Q ss_pred -EEEEEEC-CCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 288 -LLATGSY-DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 288 -~l~s~~~-dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
.++..+. |+.+.+|+... .....+..|...|..++|+|++.++++++. |+.+++|++..+..+..+..|...+.+
T Consensus 124 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred eEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 5555444 89999999885 777888999999999999999998888885 999999999998889999989999999
Q ss_pred EEecCCCE-EEEE-eCCCeEEEEEcCCCcceE-EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEecc
Q 010754 363 VDWRNNVS-FATS-STDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLRE 438 (502)
Q Consensus 363 v~~~~~~~-~~~~-~~d~~i~i~d~~~~~~~~-~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~ 438 (502)
+.|.+... ++++ +.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++|+...... +..+..
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 282 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG 282 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec
Confidence 99997764 4444 899999999998777777 688888775 448999999999999999999999987664 444467
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|...|.++.|+|++. .++.++.++.+.+|..
T Consensus 283 ~~~~v~~~~~~~~~~-------~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 283 HSSSVLSVAFSPDGK-------LLASGSSDGTVRLWDL 313 (466)
T ss_pred CCccEEEEEECCCCC-------EEEEeeCCCcEEEEEc
Confidence 889999999999776 5566666666888853
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-19 Score=173.66 Aligned_cols=225 Identities=21% Similarity=0.400 Sum_probs=174.8
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
++.|.||...|+|+.|...|.++++|+.|..++||...+..+. ....+|.+.|+.++.+.+..
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l-----------------As~rGhs~ditdlavs~~n~ 245 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL-----------------ASCRGHSGDITDLAVSSNNT 245 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh-----------------ccCCCCccccchhccchhhh
Confidence 5678899999999999999999999999999999998876643 23356788999999999999
Q ss_pred EEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc--------------eEEE
Q 010754 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--------------WKQQ 352 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~--------------~~~~ 352 (502)
++++++.|..|++|.+. +..+..+.+|++.|++++|+|.. +.+.||++++||.+-.- ....
T Consensus 246 ~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 246 MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 99999999999999976 56777889999999999999964 77899999999987110 0000
Q ss_pred Eee----------cc------CCeEEEEecCCCE------------EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEE
Q 010754 353 FEF----------HS------GPTLDVDWRNNVS------------FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV 404 (502)
Q Consensus 353 ~~~----------~~------~~v~~v~~~~~~~------------~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l 404 (502)
+.+ .. -....+.|..... .+++-.+-.+.+|++.++..++.+.+|...+..+
T Consensus 322 ~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 322 ILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVL 401 (1113)
T ss_pred eeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeee
Confidence 000 00 0011122222221 2333345667889999999999999999999999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 405 KWDPTGS-LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 405 ~~sp~g~-~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.++|-.. ...+++.||...|||+-.|.+++.+......+..-+||+||+
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT 451 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc
Confidence 9999655 456889999999999999988876653345677889999998
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-17 Score=163.60 Aligned_cols=221 Identities=18% Similarity=0.233 Sum_probs=158.6
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCC---CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
..+.+..|...|...+|+|+|+.|+.++.+ ..|++||+.++... .+.. .. .....++|+
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-----------~l~~----~~---g~~~~~~wS 256 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-----------VVAS----FR---GHNGAPAFS 256 (429)
T ss_pred CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-----------EEec----CC---CccCceeEC
Confidence 356678888999999999999999988754 36999999876421 1111 11 123468999
Q ss_pred CCCCEEEEEE-CCCeEEEE--ECCCceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCC-ceEEEEeeccC
Q 010754 284 GEGTLLATGS-YDGQARIW--STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTE-EWKQQFEFHSG 358 (502)
Q Consensus 284 ~~g~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~-~~~~~~~~~~~ 358 (502)
|||+.|+.++ .+|.+.|| |+.+.....+..+...+....|+|+|+.|+.++ .++...||++... .....+ .+..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~ 335 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG 335 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC
Confidence 9999888765 67866555 666666666777777888999999999877554 5788888876532 222222 2332
Q ss_pred CeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeEEE
Q 010754 359 PTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM--KQDKYVHD 435 (502)
Q Consensus 359 ~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~--~~~~~~~~ 435 (502)
....|+|++. ++..+.+ .+.+||+.++........+ ....+.|+|+|++|+.++.+|.+.+|.+ .+++.+..
T Consensus 336 --~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 --YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred --CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 4567887765 5555554 5666999888654332222 3356789999999999999998888875 46788888
Q ss_pred eccCCCcEEEEEEccC
Q 010754 436 LREHSKEIYTIRWSPT 451 (502)
Q Consensus 436 ~~~h~~~i~~v~~sp~ 451 (502)
+..|.+.+...+|||-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 9888888999999995
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=160.34 Aligned_cols=229 Identities=20% Similarity=0.241 Sum_probs=169.6
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.++.++++|.++|.|++..+++..+++|+.||+|+.|++.... .+...+....+.....+|...|+.+++|+.
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~-------dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~ 407 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ-------DPDDSYDPSVLSGTLLGHTDAVWLLALSST 407 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC-------CcccccCcchhccceeccccceeeeeeccc
Confidence 3578899999999999999999999999999999999987321 111222223456677889999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCceEEEecCcc--CCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEeecc-----
Q 010754 286 GTLLATGSYDGQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS----- 357 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----- 357 (502)
...|++++.||++++|.......+++.... +.-.++.+-... ...++...-+.-.++++.....+..+....
T Consensus 408 ~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 408 KDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred ccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence 999999999999999997655444443322 222444443222 223333333444445555554444443221
Q ss_pred --CCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 358 --GPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 358 --~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
..+..+.+.+ ....+++..|+.|+++|..++.++.....|...++++++.|+|-+|++++.||.+++|.+....++.
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 2345556655 4567788899999999999999999999999999999999999999999999999999998888887
Q ss_pred EeccCCC
Q 010754 435 DLREHSK 441 (502)
Q Consensus 435 ~~~~h~~ 441 (502)
....|..
T Consensus 568 es~~~r~ 574 (577)
T KOG0642|consen 568 ESTAHRK 574 (577)
T ss_pred ccccccc
Confidence 7776653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=160.45 Aligned_cols=229 Identities=14% Similarity=0.160 Sum_probs=196.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCe
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~ 297 (502)
-+.+.++.+|.+|+.|+.-|.|..+|+.++.+...+.. ...|.++.|-.+.+++|++- ...
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v------------------~Etv~Dv~~LHneq~~AVAQ-K~y 192 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV------------------METVRDVTFLHNEQFFAVAQ-KKY 192 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh------------------hhhhhhhhhhcchHHHHhhh-hce
Confidence 45789999999999999999999999998765322111 23588899988888888765 478
Q ss_pred EEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeC
Q 010754 298 ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSST 376 (502)
Q Consensus 298 i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~ 376 (502)
++|||-.|..+..+..| ..|..+.|-|..-.|++++..|.++--|+.+|+.+..+....+.+..++-.|-+. +-+|..
T Consensus 193 ~yvYD~~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 193 VYVYDNNGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred EEEecCCCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 99999999888888766 4689999999988888999999999999999999999988888888888877554 668889
Q ss_pred CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCC
Q 010754 377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 456 (502)
Q Consensus 377 d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~ 456 (502)
.|+|.+|......++..+-.|.++|.+|++.++|+|+||.+.|..++|||+++...++++.. ..+...+++|..|-
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkgl--- 347 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGL--- 347 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccc---
Confidence 99999999999999988889999999999999999999999999999999999887777764 45688899999886
Q ss_pred CCCccEEEEeecCceEEEEe
Q 010754 457 NPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 457 ~~~~~l~las~~~~~~iw~~ 476 (502)
+.++....+.+|--
T Consensus 348 ------LA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 348 ------LALSYGDHVQIWKD 361 (545)
T ss_pred ------eeeecCCeeeeehh
Confidence 77778888999953
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=158.08 Aligned_cols=245 Identities=21% Similarity=0.273 Sum_probs=178.7
Q ss_pred CCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC--CEEE
Q 010754 214 HTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLA 290 (502)
Q Consensus 214 H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g--~~l~ 290 (502)
-...|+|+.|+| +..+||.|+.+|.|.+||+..+.... ..........|..+++.+.|..+- .-++
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-----------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~ 309 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-----------PSGLSALEVSHSEPVTAVVWLQNEHNTEFF 309 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------CcccccccccCCcCeEEEEEeccCCCCceE
Confidence 347899999999 57899999999999999998765321 111223344678889999997654 4499
Q ss_pred EEECCCeEEEEECCCceE-------EEec------CccCCeEEEEEecCC-CEEEEEecCCeEEEEE---cCCCc-----
Q 010754 291 TGSYDGQARIWSTNGDLK-------CTLS------KHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWD---VKTEE----- 348 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~~-------~~~~------~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd---~~~~~----- 348 (502)
+++.||.|..|+++.-.. .... .....+++++|.+.. ..|++|+.+|.|.-=+ .+...
T Consensus 310 s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 310 SLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred EEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 999999999998653111 1111 223468999998844 6789999999988733 22221
Q ss_pred eEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcC-CCcceEEEecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 010754 349 WKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIW 425 (502)
Q Consensus 349 ~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~-~~~~~~~~~~h~~~i~~l~~sp~g-~~las~s~dg~i~iw 425 (502)
....+..|.++|..+.++|-. .++..+.|.+++||... ...|+..+..+...|++++|||.. ..|+++..||.|.||
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW 469 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW 469 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence 233566788999999998733 33334449999999998 778888888888889999999975 467888889999999
Q ss_pred ECCC--CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 426 NMKQ--DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 426 d~~~--~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
|+.. ..++.+.+.+....+.+.|++.|. +++.+|....++++.+
T Consensus 470 DLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~---------~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 470 DLLQDDEEPVLSQKVCSPALTRVRWSPNGK---------LLAVGDANGTTHILKL 515 (555)
T ss_pred hhhccccCCcccccccccccceeecCCCCc---------EEEEecCCCcEEEEEc
Confidence 9864 345566665677788899999998 6666664444444333
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=154.92 Aligned_cols=278 Identities=21% Similarity=0.269 Sum_probs=198.3
Q ss_pred CCCcccccCCCCceeeeC---C-CceEEeccCCCceEEEEEcCCCC--eEEEEeCCCcEEEEecCCCCccC---------
Q 010754 187 PEPMDIATTSASESFEIP---N-SDVTILEGHTSEVCACAWSPAGS--LLASGSGDSTARIWTIADGTSNG--------- 251 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~---~-~~~~~l~~H~~~V~~~~~~p~~~--~l~sgs~dg~v~iw~~~~~~~~~--------- 251 (502)
|....+++++.+++++++ . .+++++. -.+.|.|++|+|.+. +||++-... +-|-+-.-+..+.
T Consensus 410 p~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~ell~ 487 (733)
T KOG0650|consen 410 PSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTKELLA 487 (733)
T ss_pred CCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhhcchhhhhh
Confidence 344455666666644443 2 2333332 346899999999764 566555544 5555533221110
Q ss_pred CCCCCCc---eeEEEe-e----e---cCccccCCCCeEEEEECCCCCEEEEEECC---CeEEEEECCCce-EEEecCccC
Q 010754 252 GAQNGPL---NVLVLK-H----V---KGRTNEKSKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDL-KCTLSKHKG 316 (502)
Q Consensus 252 ~~~~~~~---~~~~~~-~----~---~~~~~~~~~~v~~l~~s~~g~~l~s~~~d---g~i~iwd~~~~~-~~~~~~~~~ 316 (502)
....... .+.... . . ......|...|..|.|+..|.||++...+ ..|.|+++.... ..-|....+
T Consensus 488 ~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG 567 (733)
T KOG0650|consen 488 SAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG 567 (733)
T ss_pred cCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCC
Confidence 0000000 000000 0 0 11233567889999999999999998765 478888876433 344556678
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCC-cceEEE
Q 010754 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGEN-RPIKTF 394 (502)
Q Consensus 317 ~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~-~~~~~~ 394 (502)
.|.++.|+|...+|++++ -..|++||+.....++.+......|..++.++ +..+++++.|+.+..||+.-+ ++.+++
T Consensus 568 ~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred ceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHh
Confidence 899999999998888876 46899999988777776666666788888876 456999999999999999754 688899
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC------CC---eeEEEeccCCCc----EEEEEEccCCCCCCCCCcc
Q 010754 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK------QD---KYVHDLREHSKE----IYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 395 ~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~------~~---~~~~~~~~h~~~----i~~v~~sp~g~~~~~~~~~ 461 (502)
.-|...+++|+|++.-.++|+|+.||++.|+.-. .. -++..+++|... |..+.|||.-. +
T Consensus 647 r~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-------W 719 (733)
T KOG0650|consen 647 RLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-------W 719 (733)
T ss_pred hhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-------e
Confidence 9999999999999999999999999999998632 11 245778888765 99999999988 9
Q ss_pred EEEEeecCceEEE
Q 010754 462 LILARLIPYFLYW 474 (502)
Q Consensus 462 l~las~~~~~~iw 474 (502)
|++|++|+++++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-17 Score=145.00 Aligned_cols=249 Identities=16% Similarity=0.216 Sum_probs=179.4
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
+-+.+|.+.|.++.|+.++++|++|+.|..+++|++...-.... .+.+......|...|.|++|+...++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------~KPI~~~~~~H~SNIF~L~F~~~N~~ 119 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------PKPIGVMEHPHRSNIFSLEFDLENRF 119 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------CCCceeccCccccceEEEEEccCCee
Confidence 45789999999999999999999999999999999875321100 01111122345678999999999999
Q ss_pred EEEEECCCeEEEEECCCceEEEecCcc---CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc-eEEE--EeeccCCeEE
Q 010754 289 LATGSYDGQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE-WKQQ--FEFHSGPTLD 362 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~--~~~~~~~v~~ 362 (502)
+++|..+++|.+.|++.+...-...|. +.|+.+..+|..+.|++.+.++.|.+||.+... .... ..........
T Consensus 120 ~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYT 199 (609)
T ss_pred EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCcccee
Confidence 999999999999999877665555554 499999999999999999999999999998665 2211 1223334566
Q ss_pred EEecCC--CEEEEEeCCCeEEEEEcCCCc-ce-----------------------------------------------E
Q 010754 363 VDWRNN--VSFATSSTDNMIYVCKIGENR-PI-----------------------------------------------K 392 (502)
Q Consensus 363 v~~~~~--~~~~~~~~d~~i~i~d~~~~~-~~-----------------------------------------------~ 392 (502)
+.|.|. ..+++.+..+.+.+||++... ++ .
T Consensus 200 ~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~ 279 (609)
T KOG4227|consen 200 AEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF 279 (609)
T ss_pred eeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce
Confidence 777664 457777788888888876421 00 0
Q ss_pred EEe-cCC-------CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------------------eeEEEeccCCC
Q 010754 393 TFA-GHQ-------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-----------------------KYVHDLREHSK 441 (502)
Q Consensus 393 ~~~-~h~-------~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~-----------------------~~~~~~~~h~~ 441 (502)
.|+ .|. ..+.+++|..+ .-+++|+++-.|+||.+... +.+..+++|.+
T Consensus 280 V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS 358 (609)
T KOG4227|consen 280 VLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS 358 (609)
T ss_pred eEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc
Confidence 010 111 13445666543 34899999999999997421 23457789999
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
-+..|.|+|... .|+..+....+++|.
T Consensus 359 v~NQVRF~~H~~-------~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 359 VPNQVRFSQHNN-------LLVSSGVENSFKLWS 385 (609)
T ss_pred cccceeecCCcc-------eEeccchhhheeccc
Confidence 999999999987 444444457899995
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=154.10 Aligned_cols=193 Identities=19% Similarity=0.319 Sum_probs=155.6
Q ss_pred CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCce
Q 010754 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~ 307 (502)
..|+.++.||.+.|.+-... .......|.+.|.+-.|+|+|.-|++++.||.|++|...|.+
T Consensus 76 d~~~i~s~DGkf~il~k~~r------------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML 137 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR------------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML 137 (737)
T ss_pred ceEEEEcCCceEEEecccch------------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH
Confidence 46788889999888763321 223345678899999999999999999999999999999988
Q ss_pred EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcC
Q 010754 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIG 386 (502)
Q Consensus 308 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~ 386 (502)
..++.....+|+|++|.|+++.++-|. .+.+.+=.+.....+-....|.+-|.+++|++ ++.+++|+.|-..++||-
T Consensus 138 RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~- 215 (737)
T KOG1524|consen 138 RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA- 215 (737)
T ss_pred HHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-
Confidence 888888889999999999987776653 45677766766666777889999999999976 566889999999999996
Q ss_pred CCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 387 ~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.|.++..-..|..+|++++|.|+ ..++.+|.. ++|+ -+...+.|..++|||||.
T Consensus 216 ~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 216 QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLSWSADGT 269 (737)
T ss_pred cCcccccCChhccceeeeeeccc-cceeeeeee-eeee-----------cCCCccceEEEEEcCCCc
Confidence 45667777789999999999999 667776654 4441 124567799999999999
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-16 Score=137.60 Aligned_cols=229 Identities=16% Similarity=0.256 Sum_probs=165.6
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..+..+.|+.+...|..|+.|| .++|........ .........|.-+-|+.. ++|..+.+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-----------------~~~~~~~~~IvEmLFSSS--LvaiV~~~ 65 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-----------------FSKDTEGVSIVEMLFSSS--LVAIVSIK 65 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHh-----------------hcccCCCeEEEEeecccc--eeEEEecC
Confidence 4567778999999999999988 577876653210 001111223555556644 66666554
Q ss_pred --CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec---cCCeEEEEecCCCE
Q 010754 296 --GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH---SGPTLDVDWRNNVS 370 (502)
Q Consensus 296 --g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~v~~~~~~~ 370 (502)
..++++++..+...--.....+|.+++++. +.|+++-.+ .|+|||+++.+.++++... ...+.++..+..+.
T Consensus 66 qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ 142 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANC 142 (391)
T ss_pred CCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCc
Confidence 458888876543333334567899999975 466666554 4999999999999888754 33355565555443
Q ss_pred -EEE--EeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeeEEEeccC--CCcEE
Q 010754 371 -FAT--SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIWNMKQDKYVHDLREH--SKEIY 444 (502)
Q Consensus 371 -~~~--~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~-i~iwd~~~~~~~~~~~~h--~~~i~ 444 (502)
++. ....|.|++||..+-+++..+..|.+.+-+++|+++|.+|||+|+.|+ |||+.+.+|+.+..|+-. ...|+
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIY 222 (391)
T ss_pred eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEE
Confidence 433 235788999999999999999999999999999999999999999997 799999999999999833 34599
Q ss_pred EEEEccCCCCCCCCCccEEEEeec--CceEEEEe
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLI--PYFLYWIC 476 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~--~~~~iw~~ 476 (502)
+++|+|+++ +++..+ +++.++-.
T Consensus 223 SL~Fs~ds~---------~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 223 SLSFSPDSQ---------FLAASSNTETVHIFKL 247 (391)
T ss_pred EEEECCCCC---------eEEEecCCCeEEEEEe
Confidence 999999998 444444 55555543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-16 Score=131.38 Aligned_cols=238 Identities=12% Similarity=0.136 Sum_probs=175.4
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|++-+|+|.+++|+.|+.+|.|.+..+.+-........+.. ......+|..+|+.++|. ..+|++|+ |
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~-------~iv~eqahdgpiy~~~f~--d~~Lls~g-d 80 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKL-------KIVPEQAHDGPIYYLAFH--DDFLLSGG-D 80 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCc-------ceeeccccCCCeeeeeee--hhheeecc-C
Confidence 3467789999999999999999999999876432221111111 112236788999999998 34777776 5
Q ss_pred CeEEEEECCCce-------EE--EecCcc-----CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 296 GQARIWSTNGDL-------KC--TLSKHK-----GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 296 g~i~iwd~~~~~-------~~--~~~~~~-----~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
|.|+-|..+... .. ....|. ..|++|-..|..+.+++++.|+.++.||+++|+..+.+++|.+-+.
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 999988743211 11 111122 3588999999888888888999999999999999999999999999
Q ss_pred EEEe-cCCCEEEEEeCCCeEEEEEcCCCcceEEEecC----------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 362 DVDW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGH----------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 362 ~v~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h----------~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
++.- ..+..+++|+.||++++||.++++.+..+... ...|-+++.+ ..+|+.|+. ..+.+|++++.
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrss 237 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSS 237 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCC
Confidence 9988 56778999999999999999999988877532 1246666654 457766654 46999999999
Q ss_pred eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++...+. -..++..+.|-.|- ++.++....+.-|.+
T Consensus 238 e~t~vfp-ipa~v~~v~F~~d~---------vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 238 ESTCVFP-IPARVHLVDFVDDC---------VLIGGEGNHVQSYTL 273 (325)
T ss_pred CceEEEe-cccceeEeeeecce---------EEEeccccceeeeee
Confidence 8887775 44567888887763 355554666777643
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-15 Score=149.17 Aligned_cols=247 Identities=29% Similarity=0.508 Sum_probs=191.3
Q ss_pred ceEEeccCCC-ceEEEEE-cCCCC-eEEEEeC-CCcEEEEecCC-CCccCCCCCCCceeEEEeeecCccccCCCCeEEEE
Q 010754 207 DVTILEGHTS-EVCACAW-SPAGS-LLASGSG-DSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (502)
Q Consensus 207 ~~~~l~~H~~-~V~~~~~-~p~~~-~l~sgs~-dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 281 (502)
.+..+.++.. .+..+.+ ++++. +++..+. |+.+.+|++.. .. .......|...|..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~~~ 162 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK-----------------LIRTLEGHSESVTSLA 162 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCe-----------------EEEEEecCcccEEEEE
Confidence 4556666443 7777777 88877 5555445 99999999886 22 1122234567799999
Q ss_pred ECCCCCEEEEEEC-CCeEEEEECCC-ceEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCCCceEE-EEeecc
Q 010754 282 WNGEGTLLATGSY-DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQ-QFEFHS 357 (502)
Q Consensus 282 ~s~~g~~l~s~~~-dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~ 357 (502)
|+|++..+++++. ++.+++|+... .....+..|...|.+++|+|++. .+++++.|+.|++||...+.... .+..|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 242 (466)
T COG2319 163 FSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242 (466)
T ss_pred ECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC
Confidence 9999999998886 99999999874 67778888999999999999998 55555999999999999888877 577777
Q ss_pred CCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcc-eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 358 GPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 358 ~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
... ...|.+.+ .+++++.|+.+++|++..... +..+.+|...|.++.|+|++..+++++.|+.+++|+..+......
T Consensus 243 ~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 321 (466)
T COG2319 243 DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321 (466)
T ss_pred cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE
Confidence 765 33777765 788899999999999997765 555567889999999999999998899999999999998887766
Q ss_pred ec--cCCCcEEEEEEccCCCCCCCCCccEEEE-eecCceEEEEeee
Q 010754 436 LR--EHSKEIYTIRWSPTGSGTNNPNQQLILA-RLIPYFLYWICSI 478 (502)
Q Consensus 436 ~~--~h~~~i~~v~~sp~g~~~~~~~~~l~la-s~~~~~~iw~~~~ 478 (502)
.. .|...+..+.|.+++. .+..+ ..++.+.+|....
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~ 360 (466)
T COG2319 322 LTLKGHEGPVSSLSFSPDGS-------LLVSGGSDDGTIRLWDLRT 360 (466)
T ss_pred eeecccCCceEEEEECCCCC-------EEEEeecCCCcEEeeecCC
Confidence 65 7888899999943312 33444 4556677776443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=144.78 Aligned_cols=207 Identities=22% Similarity=0.416 Sum_probs=157.4
Q ss_pred CceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 206 SDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
.....+.||...|..+.++|+ .+++++||.|.+||+|++++..++. ..+-..+|...|.++.|++
T Consensus 126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~--------------VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA--------------VFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE--------------EecccccccCcEEEEEEcC
Confidence 345678899999999999996 6899999999999999999987532 2344567788999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCceE-----------------------------EEecCccCCeEEEEEecCCCEEEEEec
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLK-----------------------------CTLSKHKGPIFSLKWNKKGDYLLTGSC 335 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~-----------------------------~~~~~~~~~v~~l~~~~~~~~l~s~~~ 335 (502)
+|.+|++|+.|..|++|++..+.. .+..-|...|-|+.|- |+++++=+-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc 269 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC 269 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence 999999999999999999762110 0222477778888886 689999999
Q ss_pred CCeEEEEEc-CCCc-------------eEEEEeeccCCeEEEEec--C-CCEEEEEeCCCeEEEEEcCCCcce--EEEec
Q 010754 336 DKTAIVWDV-KTEE-------------WKQQFEFHSGPTLDVDWR--N-NVSFATSSTDNMIYVCKIGENRPI--KTFAG 396 (502)
Q Consensus 336 d~~i~~wd~-~~~~-------------~~~~~~~~~~~v~~v~~~--~-~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~ 396 (502)
++.|..|.. .-++ .+..+......+.-+.|. + ...++.|...|.|++||++...+. .++..
T Consensus 270 enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~ 349 (385)
T KOG1034|consen 270 ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTH 349 (385)
T ss_pred CceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEe
Confidence 999999976 2111 122233333344455553 2 345888999999999999988762 22321
Q ss_pred --CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 397 --HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 397 --h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
....|...+|+.||.+|+..++|++|.-||..
T Consensus 350 s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 350 SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 24579999999999999999999999999854
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.2e-16 Score=153.71 Aligned_cols=245 Identities=18% Similarity=0.209 Sum_probs=173.5
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.|+-.++|.++||+++++|+|..||.|.+|.--.... .... .....-|...|++++|+++|.+|++|
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~------~~~t-------~t~lHWH~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD------DSET-------CTLLHWHHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEecccccc------cccc-------ceEEEecccccceeEEecCCceEeec
Confidence 4777799999999999999999999999997443110 0000 01112245689999999999999999
Q ss_pred ECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc-----------CCeE
Q 010754 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-----------GPTL 361 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----------~~v~ 361 (502)
+..|.+.+|.+.+....-+..-.++|..+.++|++.+.+....|+.|.+..+.+.....++.+.. +-.+
T Consensus 270 G~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t 349 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTT 349 (792)
T ss_pred ccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccce
Confidence 99999999999877777888889999999999999999999999999999876554443333211 1233
Q ss_pred EEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEE----------------------------------------------
Q 010754 362 DVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTF---------------------------------------------- 394 (502)
Q Consensus 362 ~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------------- 394 (502)
.++..| -+.++..+..|.|.+||+-+...+..+
T Consensus 350 ~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e 429 (792)
T KOG1963|consen 350 GVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGE 429 (792)
T ss_pred eEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCce
Confidence 344444 333555555666666665443222111
Q ss_pred ----------------------ecCCCcEEEEEEc-CCCC-EEEEEeCCCcEEEEECCC----------CeeEEEeccCC
Q 010754 395 ----------------------AGHQGEVNCVKWD-PTGS-LLASCSDDVTAKIWNMKQ----------DKYVHDLREHS 440 (502)
Q Consensus 395 ----------------------~~h~~~i~~l~~s-p~g~-~las~s~dg~i~iwd~~~----------~~~~~~~~~h~ 440 (502)
..|...+...++. +... ..++++.||.++||-+.. ..|...-..|.
T Consensus 430 ~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k 509 (792)
T KOG1963|consen 430 VSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK 509 (792)
T ss_pred EEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeecccc
Confidence 1354444444443 3333 788999999999998732 22333223478
Q ss_pred CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 441 KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 441 ~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
.++++++|+.||+ ++..+.++.+.+|+..-
T Consensus 510 ~~i~a~~fs~dGs--------lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 510 TPITALCFSQDGS--------LLAVSFDDTITIWDYDT 539 (792)
T ss_pred CcccchhhcCCCc--------EEEEecCCEEEEecCCC
Confidence 8999999999997 78889999999998543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=137.99 Aligned_cols=208 Identities=19% Similarity=0.321 Sum_probs=160.1
Q ss_pred eEEec-cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--
Q 010754 208 VTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-- 284 (502)
Q Consensus 208 ~~~l~-~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-- 284 (502)
+..|. .|-+.|.|+.|.|++..+++-. |..|.+|++..+..+.. .+ .......+....++-+|+|
T Consensus 115 v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va---------ev--~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 115 VASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA---------EV--LSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred hhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe---------ee--cccccccccceecccccCCCC
Confidence 34444 5667999999999998888875 78999999988764210 00 1111222456688899998
Q ss_pred CCCEEEEEECCCeEEEEECCCc--eEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCC-CceEEEEeeccCCe
Q 010754 285 EGTLLATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPT 360 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v 360 (502)
+|+.+++.+ |+++..||+++. ....-..|...|..+.|+|+.. +|++|+.||.|++||.+. ..+++.+..|...|
T Consensus 183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 788887765 799999998753 2334467888999999999774 677999999999999975 45788889999999
Q ss_pred EEEEecC--CCEEEEEeCCCeEEEEEcCCC-----------------------------cceEEEecCCCcEEEEEEcCC
Q 010754 361 LDVDWRN--NVSFATSSTDNMIYVCKIGEN-----------------------------RPIKTFAGHQGEVNCVKWDPT 409 (502)
Q Consensus 361 ~~v~~~~--~~~~~~~~~d~~i~i~d~~~~-----------------------------~~~~~~~~h~~~i~~l~~sp~ 409 (502)
.++.|.+ +..+++++.|..|.+|-...- ..+.++..|.+.|.+++||.-
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 9999976 567899999999999875421 124577889999999999975
Q ss_pred CC-EEEEEeCCCcEEEEECC
Q 010754 410 GS-LLASCSDDVTAKIWNMK 428 (502)
Q Consensus 410 g~-~las~s~dg~i~iwd~~ 428 (502)
.. .+|+-|.||.+.|=.+.
T Consensus 342 dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CCeeEEEeccCceEEeecCC
Confidence 54 57889999999887765
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-16 Score=136.46 Aligned_cols=229 Identities=20% Similarity=0.278 Sum_probs=177.9
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+.--..+|+|.+|++|+..+|.+.....|.||.......- ........|...|++++|+|..+.|+
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w--------------~~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW--------------EPAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCc--------------eeceehhhhCcceeEEeecCCCCcee
Confidence 3334588999999999999999999999999998765421 12234456788999999999999999
Q ss_pred EEECCCeEEEEEC-CC---ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce----EEEEeeccCCeEE
Q 010754 291 TGSYDGQARIWST-NG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW----KQQFEFHSGPTLD 362 (502)
Q Consensus 291 s~~~dg~i~iwd~-~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~ 362 (502)
+|+.|..-++|.. .+ +....+..++...+++.|+|.++.|++|+..+.|.||-++...- .+.-..+...|.+
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 9999999999997 43 33446677899999999999999999999999999997754321 1122345677999
Q ss_pred EEecCCCE-EEEEeCCCeEEEEEcCC------------------CcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 010754 363 VDWRNNVS-FATSSTDNMIYVCKIGE------------------NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (502)
Q Consensus 363 v~~~~~~~-~~~~~~d~~i~i~d~~~------------------~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~ 423 (502)
++|++++. +++|+.|+..+++..-- |+.+..+....+.|..+.|+|+|..|+-.+.|.++.
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 99988765 67888999999987421 122333434567899999999999999999999999
Q ss_pred EEECCCCe-eEEEeccCCCcEEEEEEccCCC
Q 010754 424 IWNMKQDK-YVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 424 iwd~~~~~-~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+=|..... .+..+..-.-|..++.|-.+.+
T Consensus 232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred EeecCCCchhccchhhccCCceeeEeecCCc
Confidence 99976654 3444443347888999987766
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=145.19 Aligned_cols=192 Identities=18% Similarity=0.221 Sum_probs=144.3
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEE-CCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec
Q 010754 278 TTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 356 (502)
.+++|+.+|..+++|+.||.+|||+ .+-........|...|.+|.|+|+|+.|++.+.| ..+||+++++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 7899999999999999999999999 5556667778899999999999999999999999 9999999999766655422
Q ss_pred --cCCeEEEEecCCC-----EEEE-EeCCCeEEEEEcCCCcc-----eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 010754 357 --SGPTLDVDWRNNV-----SFAT-SSTDNMIYVCKIGENRP-----IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (502)
Q Consensus 357 --~~~v~~v~~~~~~-----~~~~-~~~d~~i~i~d~~~~~~-----~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~ 423 (502)
......+.|..+. ++++ ....+.|+.|++....- ..+...-...|++++.+++|+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 1224455554443 2332 23455666666543221 111222235799999999999999999999999
Q ss_pred EEECCCCeeEEEec-cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 424 IWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 424 iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|++..+.++++.++ .|..-|+.+.|+||.+ .+...+++....+-...
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-------~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-------YLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcC-------cccccccCCceeEEEEe
Confidence 99999988887776 8999999999999988 33444444444444333
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.4e-16 Score=133.52 Aligned_cols=244 Identities=22% Similarity=0.323 Sum_probs=178.6
Q ss_pred CceEEEEEcC--C-CCeEEEEeC----CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC-
Q 010754 216 SEVCACAWSP--A-GSLLASGSG----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT- 287 (502)
Q Consensus 216 ~~V~~~~~~p--~-~~~l~sgs~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~- 287 (502)
-.++++.|+. + +.+||.|+. ...|.|..+..... .........|..+++.+.|.|+..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~--------------e~~~~a~fd~~YP~tK~~wiPd~~g 110 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG--------------ELVEDANFDHPYPVTKLMWIPDSKG 110 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC--------------ceeccCCCCCCCCccceEecCCccc
Confidence 4578899984 3 457888874 35666666553211 001112245677899999999763
Q ss_pred ----EEEEEECCCeEEEEECCC--ceE---E-----EecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCc---e
Q 010754 288 ----LLATGSYDGQARIWSTNG--DLK---C-----TLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEE---W 349 (502)
Q Consensus 288 ----~l~s~~~dg~i~iwd~~~--~~~---~-----~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~---~ 349 (502)
+||+++ -.+|+|.+.. ... . .-..+..++++..|+. +-++|.+++-|-+..|||+.++. .
T Consensus 111 ~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~v 188 (364)
T KOG0290|consen 111 VYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTV 188 (364)
T ss_pred cCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccce
Confidence 555544 5799998652 111 1 1234678999999997 55788899999999999998863 4
Q ss_pred EEEEeeccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCcceEEEe---cCCCcEEEEEEcCC-CCEEEEEeCC-CcE
Q 010754 350 KQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFA---GHQGEVNCVKWDPT-GSLLASCSDD-VTA 422 (502)
Q Consensus 350 ~~~~~~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~h~~~i~~l~~sp~-g~~las~s~d-g~i 422 (502)
..++-.|...|.+|+|.. .+.|++.+.||.+++||++.......+. ....+...++|++. -+++|+-..| ..|
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 667888999999999977 4569999999999999999876433332 12456888999885 4677876665 469
Q ss_pred EEEECCC-CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEEE
Q 010754 423 KIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFK 481 (502)
Q Consensus 423 ~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~~ 481 (502)
.|-|++. ..++..+++|.+.|+.|+|.|... ..+.+|+-|....+|+..-.+.
T Consensus 269 ~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~------~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 269 VILDIRVPCTPVARLRNHQASVNGIAWAPHSS------SHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred EEEEecCCCcceehhhcCcccccceEecCCCC------ceeeecCCcceEEEEecccccc
Confidence 9999986 467889999999999999999876 4677777788899997654333
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=141.33 Aligned_cols=199 Identities=16% Similarity=0.308 Sum_probs=158.5
Q ss_pred ccccCCCCeEEEEECC-CCCEEEEEECCCeEEEEECC--------CceEEEecCccCCeEEEEEecCC-CEEEEEecCCe
Q 010754 269 RTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN--------GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKT 338 (502)
Q Consensus 269 ~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~--------~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~ 338 (502)
...+|..+|..++|+| +...||+|+.|.+|.||.+- ...+..+.+|...|-.+.|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3457899999999999 66789999999999999853 23467888999999999999965 68889999999
Q ss_pred EEEEEcCCCceEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCC-cEEEEEEcCCCCEEEEE
Q 010754 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASC 416 (502)
Q Consensus 339 i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~-~i~~l~~sp~g~~las~ 416 (502)
|.+||+.+|..+.++. |...|.+++|+. +..+++.+.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999888887 999999999954 56689999999999999999999988888875 34456677888855554
Q ss_pred e---CCCcEEEEECCCCe---eEEEeccCCCcEEEEEEccCCCCCCCCCccE-EEEeecCceEEEEe
Q 010754 417 S---DDVTAKIWNMKQDK---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQL-ILARLIPYFLYWIC 476 (502)
Q Consensus 417 s---~dg~i~iwd~~~~~---~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l-~las~~~~~~iw~~ 476 (502)
- .+..+-+||-.+-+ .+..+. .+..|.=--|.||.+ .+ +.|-+|+.|+.+-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~-------ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTS-------IVYLCGKGDSSIRYFEI 293 (472)
T ss_pred cccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCC-------EEEEEecCCcceEEEEe
Confidence 3 36789999975533 234444 344566667888876 33 44566788888853
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-15 Score=124.00 Aligned_cols=232 Identities=13% Similarity=0.175 Sum_probs=166.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
++...++|.++|+.++|+ ..+|++|+ ||.|+=|............ .....+.+.......-..|++|...|..
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K----~lwe~~~P~~~~~~evPeINam~ldP~e 126 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATK----RLWEVKIPMQVDAVEVPEINAMWLDPSE 126 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccch----hhhhhcCccccCcccCCccceeEeccCC
Confidence 345568999999999998 45677765 5999999887543210000 0000011111111223469999999988
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC-------
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG------- 358 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~------- 358 (502)
+.++.++.|+.++-||++ ++....+.+|+..|.++.-......+++|+.||++++||.++++.++.+.....
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~ 206 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD 206 (325)
T ss_pred CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence 888888899999999987 677789999999999999866667899999999999999999999887764322
Q ss_pred ---CeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 359 ---PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 359 ---~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
.|.+++ .+...++|+....+.+|.++...+..+|. -...+..+.|.. ..+++++..+.|.-|.+. |.+-..
T Consensus 207 ~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ 280 (325)
T KOG0649|consen 207 WGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQAN 280 (325)
T ss_pred cCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeeeeec-cEEEEe
Confidence 133333 23345667777889999999999988887 456788888864 467788888889999865 444445
Q ss_pred eccCCCcEEEEEEccC
Q 010754 436 LREHSKEIYTIRWSPT 451 (502)
Q Consensus 436 ~~~h~~~i~~v~~sp~ 451 (502)
+...+..+++..|+..
T Consensus 281 ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 281 IPVESTACYSASWQTS 296 (325)
T ss_pred ccCCccceeeecccCC
Confidence 5545556777777654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-16 Score=135.63 Aligned_cols=179 Identities=23% Similarity=0.403 Sum_probs=146.7
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCc----eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEc-CCCce
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV-KTEEW 349 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~-~~~~~ 349 (502)
.+|+|.+|++|+..+|++..+..|.||...+. ...++..|...|++++|+|..+.|++|+.|+.-++|.. ..+++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~W 90 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTW 90 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCee
Confidence 57999999999999999999999999997653 46688899999999999999999999999999999998 44444
Q ss_pred E--EEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcce----EEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 350 K--QQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPI----KTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 350 ~--~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~----~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
. ..+..+....++|.|+| .+.|++|+....|.||-+....-= ..-+.+.+.|+++.|+|++-+|++||.|+..
T Consensus 91 kptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~ 170 (361)
T KOG1523|consen 91 KPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC 170 (361)
T ss_pred ccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce
Confidence 3 34455788999999977 567999999999999987654321 1223456889999999999999999999999
Q ss_pred EEEECC------------------CCeeEEEeccCCCcEEEEEEccCCC
Q 010754 423 KIWNMK------------------QDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 423 ~iwd~~------------------~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
||+..- -|.++..+....+.|..+.|+|+|.
T Consensus 171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 999741 1233444545567899999999998
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=136.16 Aligned_cols=193 Identities=20% Similarity=0.337 Sum_probs=147.4
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-CCEEEEEECCC
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSYDG 296 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~s~~~dg 296 (502)
..+++|+|||..|++|-. ..|+++|+........ + ...+.....+..+-|.+++|+|. ...+++|++..
T Consensus 161 AhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~-------v--y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q 230 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCP-------V--YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ 230 (406)
T ss_pred heeEEecCCCCeEeeccc-ceEEEeeccCCCCCCc-------c--hhhhhcccccccceeeeeeccCCCCcceeeecccc
Confidence 468999999999998854 8999999854321110 0 01111112234567999999994 45999999999
Q ss_pred eEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCC-ceEEEEeeccC-CeEEEEe---cCCC
Q 010754 297 QARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTE-EWKQQFEFHSG-PTLDVDW---RNNV 369 (502)
Q Consensus 297 ~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~-~~~~~~~~~~~-~v~~v~~---~~~~ 369 (502)
.+-||.-. ...+..+.+|.+.|+.++|.++|+.|++|+. |-.|..||++.. .++..+..|.+ .-..|-| ..+.
T Consensus 231 ~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 231 RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCc
Confidence 99888755 4677788899999999999999999999886 778999999754 34555555554 3344555 3355
Q ss_pred EEEEEeCCCeEEEEEcCC-CcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 370 SFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg 420 (502)
.+++|+.||.|++||+.. +..+..+..|...++.++++|--.++|+++...
T Consensus 311 ~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 678888999999999998 677888888999999999999999999988764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=134.93 Aligned_cols=184 Identities=17% Similarity=0.355 Sum_probs=143.3
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec--CCCEEEEEecCCeEEEEEcCCCceEEEEee--cc-CCe
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HS-GPT 360 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~-~~v 360 (502)
..+|++..+|.|++||.. ++....+.++...+..++|.. ....+.+|+.||+|++||+|+......+.. +. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 568888899999999965 577788999999999999987 457899999999999999998765554433 33 244
Q ss_pred EEEEec-CCCEEEEEe----CCCeEEEEEcCCCcc-eEEE-ecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe-
Q 010754 361 LDVDWR-NNVSFATSS----TDNMIYVCKIGENRP-IKTF-AGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDK- 431 (502)
Q Consensus 361 ~~v~~~-~~~~~~~~~----~d~~i~i~d~~~~~~-~~~~-~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~~- 431 (502)
.+++-. ..+.+++|. .+-.+.+||++..+. +..+ ..|...|++++|+|. .++|+|||.||-|.|+|++...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 455544 344455553 356799999998876 5544 579999999999995 5789999999999999997643
Q ss_pred ---eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 432 ---YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 432 ---~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+++.+ .|.+.|..+.|+.++. ++++.-+-..+..+|.+.
T Consensus 201 eDaL~~vi-N~~sSI~~igw~~~~y------krI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 201 EDALLHVI-NHGSSIHLIGWLSKKY------KRIMCLTHMETFAIYELE 242 (376)
T ss_pred hhhHHHhh-cccceeeeeeeecCCc------ceEEEEEccCceeEEEcc
Confidence 23333 4778899999999985 458888888999999653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=144.10 Aligned_cols=244 Identities=17% Similarity=0.254 Sum_probs=175.3
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
.|..++|-|||..|+.+.. ..+.+||..++.... ...+|...|.|++|+.||+.+++|+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq-----------------tLKgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ-----------------PLKGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc-----------------ccccccceEEEEEEccCCceeccCCCce
Confidence 7999999999998877755 579999999887433 3345678899999999999999999999
Q ss_pred eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEe
Q 010754 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSS 375 (502)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~ 375 (502)
.|.+|+..-.-... ..|...|.|+.|+|-...|++|+.. ..-+|........+ . .....+.+++|..+ ..|+.|-
T Consensus 76 ~VI~W~~klEG~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 76 SVIIWTSKLEGILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred eEEEecccccceee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEec
Confidence 99999854322222 3689999999999999999988764 46678765433221 1 13446888999665 4588899
Q ss_pred CCCeEEEEEcCCCcceEEE---ecCCCcEEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEE
Q 010754 376 TDNMIYVCKIGENRPIKTF---AGHQGEVNCVKWDPTG-----SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (502)
Q Consensus 376 ~d~~i~i~d~~~~~~~~~~---~~h~~~i~~l~~sp~g-----~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~ 447 (502)
.+|+|.+-+-. +.+...+ .|...+|.+|+|+|.. ..++......++.++.+. |+.+..-+.-.-.-.++.
T Consensus 152 ~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis 229 (1081)
T KOG1538|consen 152 FNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS 229 (1081)
T ss_pred cCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe
Confidence 99999887543 3332233 3467899999999963 357777777777777754 444432222222346788
Q ss_pred EccCCCCCCCCCccEEEEeecCceEE----------------EEeeeEEEeeecccccCc
Q 010754 448 WSPTGSGTNNPNQQLILARLIPYFLY----------------WICSIYFKYFGTTERANL 491 (502)
Q Consensus 448 ~sp~g~~~~~~~~~l~las~~~~~~i----------------w~~~~~~~~~g~~~~~~~ 491 (502)
+.|+|. ++++|++++.+.+ |+|.+...|.+++-..++
T Consensus 230 Yf~NGE-------y~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 230 YFTNGE-------YILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred eccCCc-------EEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEE
Confidence 888887 6777777765444 688888888887765544
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.4e-15 Score=145.31 Aligned_cols=197 Identities=19% Similarity=0.274 Sum_probs=145.5
Q ss_pred CCCeEEEEECC-CCCEEEEEECCCeEEEEECCCceE-------EEecCccCCeEEEEEecCC--CEEEEEecCCeEEEEE
Q 010754 274 SKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-------CTLSKHKGPIFSLKWNKKG--DYLLTGSCDKTAIVWD 343 (502)
Q Consensus 274 ~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~v~~l~~~~~~--~~l~s~~~d~~i~~wd 343 (502)
...|+++.|+| +..+++.|+++|.|.+||++.... .....|..+|+.+.|..+- .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 45799999999 667888899999999999874322 2345689999999997654 4499999999999998
Q ss_pred cCCCceEE------EEe------eccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCc--------ceEEEecCCCcE
Q 010754 344 VKTEEWKQ------QFE------FHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR--------PIKTFAGHQGEV 401 (502)
Q Consensus 344 ~~~~~~~~------~~~------~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~--------~~~~~~~h~~~i 401 (502)
++.-.... ... .....++.+.|.+ ...|++|+..|.|+.......+ .+..+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 86543211 111 1233578888854 4669999999999885443322 234566788999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 402 NCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 402 ~~l~~sp~g~~las~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+++.++|=+..++..+.|.+++||... ...++..+..+...|++++|||... ..++++..+|.+.+|++
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp------avF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP------AVFATVDGDGNLDIWDL 471 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc------eEEEEEcCCCceehhhh
Confidence 999999987665555559999999988 6777777777888899999999987 22344444577777753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-16 Score=139.86 Aligned_cols=158 Identities=23% Similarity=0.419 Sum_probs=135.1
Q ss_pred CCCeEEEEECCCCC-EEEEEECCCeEEEEECC-----C-----ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEE
Q 010754 274 SKDVTTLDWNGEGT-LLATGSYDGQARIWSTN-----G-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342 (502)
Q Consensus 274 ~~~v~~l~~s~~g~-~l~s~~~dg~i~iwd~~-----~-----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~w 342 (502)
..+|.++.|.++.. .+++|+.|..|++|-++ + .....+..|...|+++.|+|+|..|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 35799999998766 99999999999999754 1 1234677899999999999999999999999999999
Q ss_pred EcC--------C--------CceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEE
Q 010754 343 DVK--------T--------EEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVK 405 (502)
Q Consensus 343 d~~--------~--------~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~ 405 (502)
-.. + ....+.+.+|...+.+++|.+++. +++++.|+.+++||+..++.+..+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 654 2 223456677889999999988765 67889999999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCe
Q 010754 406 WDPTGSLLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 406 ~sp~g~~las~s~dg~i~iwd~~~~~ 431 (502)
|.|-++++++-+.|...+++.+...+
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeee
Confidence 99999999999999877777765443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-14 Score=134.26 Aligned_cols=238 Identities=12% Similarity=0.121 Sum_probs=155.5
Q ss_pred CCceEEEEEcCCCCeEEEEe-CCCcEEEEecCC-CCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGS-GDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs-~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.+....++++|++++|++++ .++.|.+|++.. +... ...... .......++|+|+|++|+++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-----------~~~~~~-----~~~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-----------FAAESP-----LPGSPTHISTDHQGRFLFSA 97 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------Eeeeec-----CCCCceEEEECCCCCEEEEE
Confidence 35577889999999887664 578899999863 2210 011110 12246789999999998888
Q ss_pred EC-CCeEEEEECCCc-----eEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEEE-----Ee-eccCC
Q 010754 293 SY-DGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQ-----FE-FHSGP 359 (502)
Q Consensus 293 ~~-dg~i~iwd~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~-----~~-~~~~~ 359 (502)
+. ++.|.+|+++.. ....+ .+.....+++++|+++++++++ .++.|.+||+.+...+.. .. .....
T Consensus 98 ~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~ 176 (330)
T PRK11028 98 SYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAG 176 (330)
T ss_pred EcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCC
Confidence 75 789999997621 12222 2334467789999999886655 569999999976332211 11 12234
Q ss_pred eEEEEecCCCE-EEEEe-CCCeEEEEEcCC--C--cceEEEecC------CCcEEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 010754 360 TLDVDWRNNVS-FATSS-TDNMIYVCKIGE--N--RPIKTFAGH------QGEVNCVKWDPTGSLLASCSD-DVTAKIWN 426 (502)
Q Consensus 360 v~~v~~~~~~~-~~~~~-~d~~i~i~d~~~--~--~~~~~~~~h------~~~i~~l~~sp~g~~las~s~-dg~i~iwd 426 (502)
...+.|++++. ++++. .++.|.+|++.. + +.+..+..+ ......+.++|+|++|+++.. ++.|.+|+
T Consensus 177 p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 177 PRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred CceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 56788888755 43444 489999999974 2 223333321 122346899999999988854 78999999
Q ss_pred CCCCe----eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee-cCceEEEEee
Q 010754 427 MKQDK----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL-IPYFLYWICS 477 (502)
Q Consensus 427 ~~~~~----~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~~~ 477 (502)
+.... .+..+.. ......++|+|+|. .++++.. ++.+.+|..+
T Consensus 257 i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~-------~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 257 VSEDGSVLSFEGHQPT-ETQPRGFNIDHSGK-------YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeCCCCeEEEeEEEec-cccCCceEECCCCC-------EEEEEEccCCcEEEEEEc
Confidence 86533 2222222 12456889999998 6666664 6778888653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=142.44 Aligned_cols=223 Identities=15% Similarity=0.188 Sum_probs=154.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEe---CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGS---GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
..+.+..+...+...+|+|||+.|+..+ .+..+.+|++.+++... +. .. ...+..++|+
T Consensus 190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-----------l~----~~---~~~~~~~~~S 251 (429)
T PRK03629 190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-----------VA----SF---PRHNGAPAFS 251 (429)
T ss_pred CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-----------cc----CC---CCCcCCeEEC
Confidence 3455666778899999999999888764 24578999987764210 00 01 1224568999
Q ss_pred CCCCEEEEE-ECCC--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC-C--eEEEEEcCCCceEEEEeecc
Q 010754 284 GEGTLLATG-SYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 284 ~~g~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~~ 357 (502)
|||+.|+.. +.+| .|.+||+.+.....+..+...+....|+|+|+.|+.++.+ + .|+++|+.++... .+....
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~ 330 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEG 330 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCC
Confidence 999988865 4444 5888998876666666666678899999999988876654 4 4555577666543 344344
Q ss_pred CCeEEEEecCCCE-EEEEeCC---CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCc---EEEEECCCC
Q 010754 358 GPTLDVDWRNNVS-FATSSTD---NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT---AKIWNMKQD 430 (502)
Q Consensus 358 ~~v~~v~~~~~~~-~~~~~~d---~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~---i~iwd~~~~ 430 (502)
.......|+|++. ++..+.+ ..|++||+.++... .+... .......|+|||++|+.++.++. +.+|++ ++
T Consensus 331 ~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DG 407 (429)
T ss_pred CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CC
Confidence 4556788888654 4444432 35888999877643 33321 23346789999999999988764 677777 46
Q ss_pred eeEEEeccCCCcEEEEEEccC
Q 010754 431 KYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~ 451 (502)
.....+.+|.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 666778888888999999983
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.3e-15 Score=133.73 Aligned_cols=248 Identities=14% Similarity=0.192 Sum_probs=175.4
Q ss_pred CceEEeccCCCceEEEEEcC--CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccC-CCCeEEEEE
Q 010754 206 SDVTILEGHTSEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK-SKDVTTLDW 282 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p--~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~ 282 (502)
+.+..+++|...+..+.|.. .+..+.+|+.||+|++||+........+. ...+ ..+..+++.
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~---------------~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS---------------WTQQSGTPFICLDL 125 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee---------------ccCCCCCcceEeec
Confidence 34677889999999999987 46789999999999999998765322111 1111 356788888
Q ss_pred CCCCCEEEEEEC----CCeEEEEECCCc---eEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCc---eEE
Q 010754 283 NGEGTLLATGSY----DGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE---WKQ 351 (502)
Q Consensus 283 s~~g~~l~s~~~----dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~---~~~ 351 (502)
+..++.+++|+. +-.|.+||++.. ...-...|...|++++|+|.. +.|++||.||-|.+||+.... .+.
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~ 205 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALL 205 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHH
Confidence 888889998863 568999998743 233456799999999999955 789999999999999986442 222
Q ss_pred EEeeccCCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEecCC------------CcEEEEEEcCCCCEEEEEe
Q 010754 352 QFEFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQ------------GEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h~------------~~i~~l~~sp~g~~las~s 417 (502)
..-.+...|..+.|..+. ++.+-+......+|++..+.+...+.... ..+...-...++..++.++
T Consensus 206 ~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 206 HVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAG 285 (376)
T ss_pred HhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEec
Confidence 333467779999998776 78888999999999999887654443221 1121211122344555444
Q ss_pred C-CCcEEEEECC---C---CeeEEEecc-CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 418 D-DVTAKIWNMK---Q---DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 418 ~-dg~i~iwd~~---~---~~~~~~~~~-h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
. -|...++-+. + .+.+..+.+ |..-|+++.|.-.+. .+++++.|+.+++|-
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~-------~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKND-------VLYTGGEDGLLQAWK 344 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccc-------eeeccCCCceEEEEe
Confidence 4 4555555432 2 334556665 666788898986665 788899999999996
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-14 Score=145.76 Aligned_cols=247 Identities=15% Similarity=0.205 Sum_probs=168.9
Q ss_pred CceEEEEEcC--CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 216 SEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p--~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
..|+.+.+-. |..+|++|+.||.||||+-..... ..+.-+.....+.....+..+.-.-++|.....+|+++|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~-----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW-----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEeccccccc-----CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC
Confidence 5688888765 457999999999999998433211 000011122222222222222235567888766777777
Q ss_pred CCCeEEEEECCCceEEE--ecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCc---eEEEEeeccCC--eEEEEe
Q 010754 294 YDGQARIWSTNGDLKCT--LSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGP--TLDVDW 365 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~--~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~--v~~v~~ 365 (502)
.-..|+|||.....+.. -.+....|+++.-+. .|+.+++|..||.|++||.+... .+...+.|... |..+.+
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 78999999987654432 223445667765443 56999999999999999997643 45566677776 999998
Q ss_pred cCC--CEEEEEeCCCeEEEEEcCCCcc--eEEEecCC---CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 366 RNN--VSFATSSTDNMIYVCKIGENRP--IKTFAGHQ---GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 366 ~~~--~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~---~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
.++ +.+++|+.+|.|++||++.... ..++..|- +..+++..+++...+|+|+. +.|+||++. |+.+..++.
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~ 1342 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKY 1342 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhccccc
Confidence 653 4599999999999999998522 22233332 35999999999999999999 899999975 444444432
Q ss_pred C-------CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 H-------SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h-------~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+ .+.+.+++|||--- .+..|+.|..+.+|.+
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~~-------llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRL-------LLAAGSADSTVSIYSC 1380 (1387)
T ss_pred CcccccCcCCCcceeeecchhH-------hhhhccCCceEEEeec
Confidence 2 34589999999865 4555666677777654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=143.88 Aligned_cols=241 Identities=17% Similarity=0.255 Sum_probs=175.5
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CCCEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLA 290 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~ 290 (502)
+....-..+.|+|-...++++...-.|+|||.+.++....+..+. .....|+.+.+-. |..+++
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~--------------~~~t~Vs~l~liNe~D~aLlL 1127 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA--------------FPDTRVSDLELINEQDDALLL 1127 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC--------------CCCCccceeeeecccchhhee
Confidence 334456678899988889998877899999999988655444332 1235688888755 556899
Q ss_pred EEECCCeEEEEECC----C--ceEEEecC-------ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec-
Q 010754 291 TGSYDGQARIWSTN----G--DLKCTLSK-------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH- 356 (502)
Q Consensus 291 s~~~dg~i~iwd~~----~--~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~- 356 (502)
+|+.||.|+||+-- + +.+....+ ..+.-.-+.|.....+|++++.-+.|+|||.....+...+...
T Consensus 1128 tas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s 1207 (1387)
T KOG1517|consen 1128 TASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS 1207 (1387)
T ss_pred eeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC
Confidence 99999999999721 1 22222221 1222255678887778888777899999999888777766543
Q ss_pred cCCeEEEEe--cCCCEEEEEeCCCeEEEEEcCCCc---ceEEEecCCCc--EEEEEEcCCCCE-EEEEeCCCcEEEEECC
Q 010754 357 SGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGE--VNCVKWDPTGSL-LASCSDDVTAKIWNMK 428 (502)
Q Consensus 357 ~~~v~~v~~--~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~h~~~--i~~l~~sp~g~~-las~s~dg~i~iwd~~ 428 (502)
...++++.- ..++.+++|..||.|++||.+... .+..++.|... |..+.+.+.|-- |++|+.||.|++||++
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence 334555554 346789999999999999998653 57888889887 999999997755 9999999999999998
Q ss_pred CCeeE--EEeccCC--C-cEEEEEEccCCCCCCCCCccEEEEeec-CceEEEEe
Q 010754 429 QDKYV--HDLREHS--K-EIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWIC 476 (502)
Q Consensus 429 ~~~~~--~~~~~h~--~-~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~~ 476 (502)
..... ..+..|. + ..+++..|+... ++|+++ ..++||..
T Consensus 1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hap---------iiAsGs~q~ikIy~~ 1332 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAP---------IIASGSAQLIKIYSL 1332 (1387)
T ss_pred cCcccccceeeeccccCccceeeeeccCCC---------eeeecCcceEEEEec
Confidence 74322 2222333 3 589999999988 666655 77888863
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=142.69 Aligned_cols=210 Identities=17% Similarity=0.262 Sum_probs=153.8
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CC
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 286 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g 286 (502)
+.|.||++-|.|+.|+.+|.+|++||.|-.+.|||....+. +.....+|...|.++.|-| +.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl----------------lhsI~TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL----------------LHSISTGHTANIFSVKFVPYTNN 107 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcce----------------eeeeecccccceeEEeeeccCCC
Confidence 56899999999999999999999999999999999875443 2223356788999999998 56
Q ss_pred CEEEEEECCCeEEEEECCC-----------ceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCce-EEE-
Q 010754 287 TLLATGSYDGQARIWSTNG-----------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEW-KQQ- 352 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~-~~~- 352 (502)
+++++|..|..|+++|++. .....+..|...|..|+-.|++ +.+.+++.||+|+-+|++.... ...
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc
Confidence 7999999999999999862 1233456789999999999988 7899999999999999986321 111
Q ss_pred --------EeeccCCeEEEEe--cCCCEEEEEeCCCeEEEEEcCCCc------------------ceEEE-ecCC-----
Q 010754 353 --------FEFHSGPTLDVDW--RNNVSFATSSTDNMIYVCKIGENR------------------PIKTF-AGHQ----- 398 (502)
Q Consensus 353 --------~~~~~~~v~~v~~--~~~~~~~~~~~d~~i~i~d~~~~~------------------~~~~~-~~h~----- 398 (502)
+....-...++.. +....|++|+.|-..++||.+... ++..| .+|-
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 1111112233444 445679999999999999954210 12222 1222
Q ss_pred ---C---cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 399 ---G---EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 399 ---~---~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
. .++-+.|+|+|.-|+..-..-.|+++|+..++...
T Consensus 268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 1 25668899999876665555579999998776543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-15 Score=126.11 Aligned_cols=219 Identities=21% Similarity=0.314 Sum_probs=156.7
Q ss_pred eEEec-cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCC--------------CCCCCcee------------
Q 010754 208 VTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGG--------------AQNGPLNV------------ 260 (502)
Q Consensus 208 ~~~l~-~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~--------------~~~~~~~~------------ 260 (502)
+..++ .|...|+.+.--|+ ..|.+-+.|+.+.+|++.-+..+.. +...+.+.
T Consensus 48 ~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsd 126 (323)
T KOG0322|consen 48 LPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSD 126 (323)
T ss_pred chhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccc
Confidence 44555 56778888888887 4577888999999999876322110 00000000
Q ss_pred ----------EEEeeecCccccCCCCeEEEEECC-CCC--EEEEEECCCeEEEEECCCc-----------eEEEecCccC
Q 010754 261 ----------LVLKHVKGRTNEKSKDVTTLDWNG-EGT--LLATGSYDGQARIWSTNGD-----------LKCTLSKHKG 316 (502)
Q Consensus 261 ----------~~~~~~~~~~~~~~~~v~~l~~s~-~g~--~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~ 316 (502)
..............+.+.|..|.. ++. ++++|..+|.+.+||+... .......|..
T Consensus 127 e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q 206 (323)
T KOG0322|consen 127 ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ 206 (323)
T ss_pred hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccC
Confidence 000011112223445677777644 222 5677888999999998752 3334557999
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEEcCC--Cc--eEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcce
Q 010754 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--EE--WKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPI 391 (502)
Q Consensus 317 ~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~--~~--~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~ 391 (502)
+|.++.|.+.-+.=++|+.+..+..|.+.- +. ...........+..+...++++ +++++.|++|+||..++..++
T Consensus 207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL 286 (323)
T KOG0322|consen 207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL 286 (323)
T ss_pred cceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch
Confidence 999999988666667888888999998753 32 2223344455678888877655 789999999999999999999
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 392 ~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
..++.|.+.|++++|+|+..++|++|.|+.|.+|++
T Consensus 287 AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999986
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=142.92 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=141.4
Q ss_pred CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC---CeEEEEECCCceEEEec
Q 010754 236 DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLS 312 (502)
Q Consensus 236 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~ 312 (502)
+..|.+||....... ....+...+.+.+|+|||+.|+.++.+ ..|++||+.+.....+.
T Consensus 183 ~~~i~i~d~dg~~~~------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~ 244 (429)
T PRK01742 183 PYEVRVADYDGFNQF------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA 244 (429)
T ss_pred eEEEEEECCCCCCce------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe
Confidence 468999997654210 011234568999999999999988754 37999998765433333
Q ss_pred CccCCeEEEEEecCCCEEEEEe-cCCeEEE--EEcCCCceEEEEeeccCCeEEEEecCCCE-EEEE-eCCCeEEEEEcCC
Q 010754 313 KHKGPIFSLKWNKKGDYLLTGS-CDKTAIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATS-STDNMIYVCKIGE 387 (502)
Q Consensus 313 ~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~--wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~-~~d~~i~i~d~~~ 387 (502)
...+....++|+|+|+.|+.++ .+|.+.| ||+.++.. ..+..+...+....|++++. ++.+ ..++...||++..
T Consensus 245 ~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 245 SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3334455789999999888764 6776555 46666654 44555666788899988765 4444 3567788887654
Q ss_pred Cc-ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe
Q 010754 388 NR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR 466 (502)
Q Consensus 388 ~~-~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las 466 (502)
.. ....+ .+.. ..+.|+|+|++|+.++.++ +.+||+.+++.......+ ...++.|+|+|. .++.++
T Consensus 324 ~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~-------~i~~~s 390 (429)
T PRK01742 324 SGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGI-------MIIYSS 390 (429)
T ss_pred CCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCC-------EEEEEE
Confidence 32 22333 3443 4578999999998888765 566999988764322222 345788999998 777777
Q ss_pred ecCceEEEE
Q 010754 467 LIPYFLYWI 475 (502)
Q Consensus 467 ~~~~~~iw~ 475 (502)
.++...+|.
T Consensus 391 ~~g~~~~l~ 399 (429)
T PRK01742 391 TQGLGKVLQ 399 (429)
T ss_pred cCCCceEEE
Confidence 778777764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-13 Score=118.78 Aligned_cols=230 Identities=16% Similarity=0.254 Sum_probs=154.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE-EEECC-
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYD- 295 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-s~~~d- 295 (502)
...++|+.|...++.|..+| .+||+++--+..... ......-.+.-|-|- .++|+ +|+.+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r---------------~~~~~G~~~veMLfR--~N~laLVGGg~~ 69 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR---------------QFIDGGFKIVEMLFR--SNYLALVGGGSR 69 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh---------------ccccCchhhhhHhhh--hceEEEecCCCC
Confidence 34589999999999987766 899998652211000 000000112222222 23433 34433
Q ss_pred -----CeEEEEEC-CCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC-CCceEEEEeecc--CCeEEEEec
Q 010754 296 -----GQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHS--GPTLDVDWR 366 (502)
Q Consensus 296 -----g~i~iwd~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~--~~v~~v~~~ 366 (502)
..|.|||- ...++..+ ....+|.++++.++ .|++. ..+.|++|... ..+.++.+.... ....+++-.
T Consensus 70 pky~pNkviIWDD~k~~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~ 145 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT 145 (346)
T ss_pred CCCCCceEEEEecccCcEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCC
Confidence 47999993 34444443 46789999999865 44443 57899999987 555666665433 234555544
Q ss_pred CCCEEE-EE-eCCCeEEEEEcCCCcc--eEEEecCCCcEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeeEEEecc--C
Q 010754 367 NNVSFA-TS-STDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIWNMKQDKYVHDLRE--H 439 (502)
Q Consensus 367 ~~~~~~-~~-~~d~~i~i~d~~~~~~--~~~~~~h~~~i~~l~~sp~g~~las~s~dg~-i~iwd~~~~~~~~~~~~--h 439 (502)
.+..++ .. -.-|.|.|-|+...+. -..+.+|.+.|.|++++-+|.++||+|..|+ |||||..+|+.+.+++- .
T Consensus 146 ~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 146 SNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD 225 (346)
T ss_pred CCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc
Confidence 444433 32 3468999999987765 4788899999999999999999999999998 79999999999999983 2
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
...|++|+|||+++ +|..+|.-+++.++..
T Consensus 226 ~A~iy~iaFSp~~s-------~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 226 RADIYCIAFSPNSS-------WLAVSSDKGTLHIFSL 255 (346)
T ss_pred hheEEEEEeCCCcc-------EEEEEcCCCeEEEEEe
Confidence 34699999999998 4444444466666643
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.7e-14 Score=145.01 Aligned_cols=270 Identities=17% Similarity=0.224 Sum_probs=185.2
Q ss_pred CCCceeeeCCCceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCC
Q 010754 196 SASESFEIPNSDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS 274 (502)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (502)
.....|......+..|..|...|..++.++. +.+++|||.||+||+|++.+...... ..+ .........
T Consensus 1029 ~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~---------s~r-S~ltys~~~ 1098 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG---------SAR-SELTYSPEG 1098 (1431)
T ss_pred CCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc---------eee-eeEEEeccC
Confidence 3344455556678999999999999999885 59999999999999999876432110 000 011111235
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCc--------eEEEecCc-cCCeEEE-EEec-CCC-EEEEEecCCeEEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--------LKCTLSKH-KGPIFSL-KWNK-KGD-YLLTGSCDKTAIVW 342 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~-~~~v~~l-~~~~-~~~-~l~s~~~d~~i~~w 342 (502)
..+.++.+.+.+..+|+++.||.|++.+++.. .......+ .+.+.++ +|.. .+. .++.+..-+.|..|
T Consensus 1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence 67999999999999999999999999987641 11111122 2233333 3332 223 67778888999999
Q ss_pred EcCCCceEEEE--eeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCCC---CEEEE
Q 010754 343 DVKTEEWKQQF--EFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTG---SLLAS 415 (502)
Q Consensus 343 d~~~~~~~~~~--~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~g---~~las 415 (502)
|+++.....++ ....+.|++++..+.. .+++|...|.+.+||++-+.++..+. .+..+|..+..+|-. ...++
T Consensus 1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEE
Confidence 99887654443 3456779999987754 58899999999999999998887764 245678888887743 34444
Q ss_pred Ee--CCCcEEEEECCCCeeEEEeccCCCcEEEEEE-ccC-------CC-----CCCCCCccEEEEeecCceEEEEe
Q 010754 416 CS--DDVTAKIWNMKQDKYVHDLREHSKEIYTIRW-SPT-------GS-----GTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 416 ~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~-sp~-------g~-----~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++ ..+-|.+|++.+|.+-..+...+ .+..+.| .|. .- +...++..+++++.|+.++.|+.
T Consensus 1259 ~~~~~~nevs~wn~~~g~~~~vl~~s~-~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETGLRQTVLWASD-GAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred ecccCCCceeeeecccCcceEEEEcCC-CCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 44 46789999999998777776441 1222222 121 11 34556778899999999999974
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-14 Score=139.75 Aligned_cols=223 Identities=17% Similarity=0.177 Sum_probs=153.8
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCC---CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
...+.+..|...+.+.+|+|+|+.|+.++.+ ..|.+|++.++... . +. .......+.+|
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-----------~---l~----~~~g~~~~~~~ 255 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-----------L---VA----SFRGINGAPSF 255 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-----------E---ec----cCCCCccCceE
Confidence 3456677788889999999999999988743 46999999776421 0 10 01123457899
Q ss_pred CCCCCEEE-EEECCC--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CCe--EEEEEcCCCceEEEEeec
Q 010754 283 NGEGTLLA-TGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKT--AIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 283 s~~g~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~--i~~wd~~~~~~~~~~~~~ 356 (502)
+|+|+.|+ +.+.+| .|++||+.+.....+..+.......+|+|+|++|+.++. +|. |+++|+.+++... +...
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~ 334 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ 334 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC
Confidence 99999775 445555 699999887766667666666678999999998887664 444 7777777766433 3333
Q ss_pred cCCeEEEEecCCCE-EEEEeCCC---eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 010754 357 SGPTLDVDWRNNVS-FATSSTDN---MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---VTAKIWNMKQ 429 (502)
Q Consensus 357 ~~~v~~v~~~~~~~-~~~~~~d~---~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d---g~i~iwd~~~ 429 (502)
........|++++. ++..+.++ .|.+||+.++... .+. +........|+|+|++|+..+.+ +.|.++++.
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~- 411 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD- 411 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 34455688987765 44433332 6999999887654 333 33345567999999988877653 458888875
Q ss_pred CeeEEEeccCCCcEEEEEEcc
Q 010754 430 DKYVHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 430 ~~~~~~~~~h~~~i~~v~~sp 450 (502)
+.....+..+.+.+...+|+|
T Consensus 412 g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCceEEcccCCCCCCCCccCC
Confidence 445566666667788889988
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=139.01 Aligned_cols=183 Identities=20% Similarity=0.341 Sum_probs=140.8
Q ss_pred eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEEECCCeEEEEECCC-------
Q 010754 234 SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNG------- 305 (502)
Q Consensus 234 s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~------- 305 (502)
+.-|.|-||++.....+. .+-+ . .. .....|+.+.|.| |...|++++.||.|++|.+..
T Consensus 600 g~gG~iai~el~~PGrLP---Dgv~-----p---~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~ 666 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLP---DGVM-----P---GL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE 666 (1012)
T ss_pred CCCceEEEEEcCCCCCCC---cccc-----c---cc--ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence 445899999998643221 1110 0 11 1134699999999 778999999999999998642
Q ss_pred -ceEEEecCccCCeEEEEEecC-CCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEE
Q 010754 306 -DLKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYV 382 (502)
Q Consensus 306 -~~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i 382 (502)
.....+..|...|+++.|+|- .+.|++++.|.+|++||+++++....+.+|.+.|.+++|+++++ +++.+.||+|++
T Consensus 667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV 746 (1012)
T KOG1445|consen 667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV 746 (1012)
T ss_pred CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence 234567889999999999994 47889999999999999999999999999999999999988765 889999999999
Q ss_pred EEcCCCc-ceEEEecCC-CcEEEEEEcCCCCEEEEEeCCC----cEEEEECCC
Q 010754 383 CKIGENR-PIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDV----TAKIWNMKQ 429 (502)
Q Consensus 383 ~d~~~~~-~~~~~~~h~-~~i~~l~~sp~g~~las~s~dg----~i~iwd~~~ 429 (502)
|..+++. ++..-.+.. ..--.|.|--+|++++..+.|. .|.+||..+
T Consensus 747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 9998764 444333322 2234577888999988877664 578888654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.7e-15 Score=134.15 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=143.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeE
Q 010754 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQA 298 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i 298 (502)
.+++|+++|..|++|+.||++|||++++...+ .....|...|.++.|+|||++|++-+.| ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~-----------------l~e~~~~~eV~DL~FS~dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI-----------------LEEIAHHAEVKDLDFSPDGKFLASIGAD-SA 209 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh-----------------hhhHhhcCccccceeCCCCcEEEEecCC-ce
Confidence 68999999999999999999999998876532 2234567889999999999999999999 99
Q ss_pred EEEECCCce-EEEec--CccCCeEEEEEecCC---CEEEE--EecCCeEEEEEcCCCce-----EEEEeeccCCeEEEEe
Q 010754 299 RIWSTNGDL-KCTLS--KHKGPIFSLKWNKKG---DYLLT--GSCDKTAIVWDVKTEEW-----KQQFEFHSGPTLDVDW 365 (502)
Q Consensus 299 ~iwd~~~~~-~~~~~--~~~~~v~~l~~~~~~---~~l~s--~~~d~~i~~wd~~~~~~-----~~~~~~~~~~v~~v~~ 365 (502)
+||+++... +.... .-+.....+.|+.++ .+++. ...-+.|+.||+...+. ..+.......|.+++.
T Consensus 210 ~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 210 RVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 999987542 22222 223346677787766 33333 33355677777643322 1111122346888998
Q ss_pred cCCCE-EEEEeCCCeEEEEEcCCCcceEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 366 RNNVS-FATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 366 ~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
++++. ++.|+.||.|.|++..+-+.++.. +.|...|+.+.|+|+.+++++.+.|..+.|..+.-
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 87766 678899999999999988776655 46888999999999999999999998888887643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-13 Score=136.16 Aligned_cols=223 Identities=15% Similarity=0.226 Sum_probs=149.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCC---CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
..+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+.. ....+.+.+|+
T Consensus 187 ~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-----------~l~~-------~~g~~~~~~~S 248 (427)
T PRK02889 187 NAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-----------VVAN-------FKGSNSAPAWS 248 (427)
T ss_pred CceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-----------Eeec-------CCCCccceEEC
Confidence 345566788899999999999998887643 35999999876421 1110 12345688999
Q ss_pred CCCCEEE-EEECCCeEEEEE--CCCceEEEecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEc--CCCceEEEEeecc
Q 010754 284 GEGTLLA-TGSYDGQARIWS--TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDV--KTEEWKQQFEFHS 357 (502)
Q Consensus 284 ~~g~~l~-s~~~dg~i~iwd--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~--~~~~~~~~~~~~~ 357 (502)
|||+.|+ +.+.+|...||. ..+.....+..+...+....|+|+|+.|+..+. ++...+|.+ .++... .+....
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g 327 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTG 327 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCC
Confidence 9999887 456777766664 555555666666666678899999998886554 456666654 444432 232233
Q ss_pred CCeEEEEecCCCE-EEEEeCCC---eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q 010754 358 GPTLDVDWRNNVS-FATSSTDN---MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQD 430 (502)
Q Consensus 358 ~~v~~v~~~~~~~-~~~~~~d~---~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg---~i~iwd~~~~ 430 (502)
.......|+|++. ++..+.++ .|++||+.++.... +.. ......+.|+|+|++|+.++.++ .+.+.++ ++
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g 404 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DG 404 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CC
Confidence 3344678887665 44444443 69999998876543 332 23346789999999988877654 3555566 45
Q ss_pred eeEEEeccCCCcEEEEEEccC
Q 010754 431 KYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~ 451 (502)
.....+..+.+.+...+|+|-
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CceEEeecCCCCCCCCccCCC
Confidence 566666667777888999984
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.8e-13 Score=135.24 Aligned_cols=224 Identities=13% Similarity=0.145 Sum_probs=154.6
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeC---CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 281 (502)
....+.+..|...|.+.+|+|||+.|+..+. +..|.+|++.++... .+ ......+...+
T Consensus 191 g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-----------~l-------~~~~g~~~~~~ 252 (435)
T PRK05137 191 GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-----------LV-------GNFPGMTFAPR 252 (435)
T ss_pred CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-----------Ee-------ecCCCcccCcE
Confidence 3455677788899999999999998888764 468999999876421 01 11233567889
Q ss_pred ECCCCCEEE-EEECCCe--EEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CC--eEEEEEcCCCceEEEEee
Q 010754 282 WNGEGTLLA-TGSYDGQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 282 ~s~~g~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~ 355 (502)
|+|||+.|+ +.+.+|. |.+||+.+.....+..+........|+|+|+.|+..+. +| .|++||+.++... .+..
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~ 331 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF 331 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec
Confidence 999999775 4555554 77778887777777777777788999999998887664 33 6888898766544 3443
Q ss_pred ccCCeEEEEecCCCE-EEEEeCC---CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 010754 356 HSGPTLDVDWRNNVS-FATSSTD---NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD------VTAKIW 425 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~-~~~~~~d---~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d------g~i~iw 425 (502)
....+....|+|++. ++....+ ..|.+||+..+.. ..+. ....+..+.|+|||++|+..+.+ ..|+++
T Consensus 332 ~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 332 GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 445566788988765 4444332 3688888765443 3333 23356788999999998765543 257888
Q ss_pred ECCCCeeEEEeccCCCcEEEEEEccC
Q 010754 426 NMKQDKYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 426 d~~~~~~~~~~~~h~~~i~~v~~sp~ 451 (502)
|+..+.. ..+. ..+.+...+|+|-
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCCC
Confidence 8766554 4444 3445778889874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=134.41 Aligned_cols=262 Identities=17% Similarity=0.227 Sum_probs=188.8
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCc-eeEEE-----------------------
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPL-NVLVL----------------------- 263 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~----------------------- 263 (502)
...|.+|.+.|..+.|+..|..|++||.|..|.+||+..++....+..+.. ++...
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 356889999999999999999999999999999999987655443322211 00000
Q ss_pred -----e--eecCccccCCCCeEEEEECCCC-CEEEEEECCCeEEEEECCCc----eEEEecCccC---CeEEEEEecCC-
Q 010754 264 -----K--HVKGRTNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTNGD----LKCTLSKHKG---PIFSLKWNKKG- 327 (502)
Q Consensus 264 -----~--~~~~~~~~~~~~v~~l~~s~~g-~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~---~v~~l~~~~~~- 327 (502)
. .-......|.+.|..++.-|+. .-|.+++.|+.+.-+|++.. .......+.. ..+.++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 0 0012334677888899988855 46889999999999987632 2222223333 56788889866
Q ss_pred CEEEEEecCCeEEEEEcCCCce------EEEEee------ccCCeEEEEec-CCCEEEEEeCCCeEEEEEcCC--C----
Q 010754 328 DYLLTGSCDKTAIVWDVKTEEW------KQQFEF------HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGE--N---- 388 (502)
Q Consensus 328 ~~l~s~~~d~~i~~wd~~~~~~------~~~~~~------~~~~v~~v~~~-~~~~~~~~~~d~~i~i~d~~~--~---- 388 (502)
..+++++.|-.+++||.+.-.. +..|.. ....|+++.|+ ....++++..|-.|+++.-.- +
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 4889999999999999865322 122221 23358999997 667788888999999995321 2
Q ss_pred ------cceEE-EecCCC--cEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCC
Q 010754 389 ------RPIKT-FAGHQG--EVNCVK-WDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP 458 (502)
Q Consensus 389 ------~~~~~-~~~h~~--~i~~l~-~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~ 458 (502)
..++. ++||.. .|.++- |-|...|+++||+=|.|.||+-.+++.+.-+.+...-|+||.=+|--+
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~P----- 449 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLP----- 449 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCc-----
Confidence 22333 788864 466665 568889999999999999999999999998888777899999999877
Q ss_pred CccEEEEeecCceEEEEe
Q 010754 459 NQQLILARLIPYFLYWIC 476 (502)
Q Consensus 459 ~~~l~las~~~~~~iw~~ 476 (502)
.|.+.+.+.+|+||-.
T Consensus 450 --vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 450 --VLASSGIDHDVKIWTP 465 (559)
T ss_pred --hhhccCCccceeeecC
Confidence 3333344688999964
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-12 Score=116.85 Aligned_cols=229 Identities=24% Similarity=0.403 Sum_probs=147.8
Q ss_pred CCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCC----CCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 215 TSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGA----QNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 215 ~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
...|+|++|-|. ++-|+.|+. +-|.||........... ..++.. .....+ ...|++|.|++||..+
T Consensus 140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~q-------vl~~pg-h~pVtsmqwn~dgt~l 210 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQ-------VLQDPG-HNPVTSMQWNEDGTIL 210 (445)
T ss_pred hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchh-------heeCCC-CceeeEEEEcCCCCEE
Confidence 467999999995 578888887 55999987643211110 111110 011122 3679999999999999
Q ss_pred EEEECC-CeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC
Q 010754 290 ATGSYD-GQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (502)
Q Consensus 290 ~s~~~d-g~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~ 367 (502)
++++.+ ..|.|||.+......+. ...+.+.-++|+|++.+|+++.-|+..++|...............+.|...+|+|
T Consensus 211 ~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 211 VTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP 290 (445)
T ss_pred eecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC
Confidence 999865 78999999876555554 4557788999999999999999999999996544333333344556899999999
Q ss_pred CCEEEEEeCCCeEEEEEcC--CCcce-------------EEE------ec---CCCcEEEEEEcCCCCEEEEEeCCC---
Q 010754 368 NVSFATSSTDNMIYVCKIG--ENRPI-------------KTF------AG---HQGEVNCVKWDPTGSLLASCSDDV--- 420 (502)
Q Consensus 368 ~~~~~~~~~d~~i~i~d~~--~~~~~-------------~~~------~~---h~~~i~~l~~sp~g~~las~s~dg--- 420 (502)
.+.++.-...|.-++|.+. ....+ ..+ .+ -.+.+.+++|+|.|.+||+.-..+
T Consensus 291 cGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v 370 (445)
T KOG2139|consen 291 CGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFV 370 (445)
T ss_pred CCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchh
Confidence 8774433333333444432 11110 000 11 135788999999999999876543
Q ss_pred -----cEEEEECCCCeeEEEec-c--CCCcEEEEEEccCC
Q 010754 421 -----TAKIWNMKQDKYVHDLR-E--HSKEIYTIRWSPTG 452 (502)
Q Consensus 421 -----~i~iwd~~~~~~~~~~~-~--h~~~i~~v~~sp~g 452 (502)
.|.+||.+..-.+.-.. + ....-..|+|+|-.
T Consensus 371 ~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~ 410 (445)
T KOG2139|consen 371 LLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK 410 (445)
T ss_pred hhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence 36778876544332221 1 11124567787754
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=120.77 Aligned_cols=218 Identities=22% Similarity=0.403 Sum_probs=150.3
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-CCEEEEEEC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATGSY 294 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~s~~~ 294 (502)
-.+..++|++.-..+|++..|-+|++|+-.... . ..+++ .....|+|++|-|. +..|++|+.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-p----------t~Lks------~sQrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-P----------TKLKS------VSQRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC-C----------ceecc------hhhcceeEEEeccCCcceeeeeec
Confidence 346788999977778999999999999966521 1 11111 12356999999995 456777775
Q ss_pred CCeEEEEECCCce---------------EEEecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEEEEeeccC
Q 010754 295 DGQARIWSTNGDL---------------KCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSG 358 (502)
Q Consensus 295 dg~i~iwd~~~~~---------------~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~ 358 (502)
+-|.||..+... +....+| .+|++|.|+++|..+++++. |..|.|||..++..+.......+
T Consensus 162 -~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 162 -AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred -ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 669999754211 1122334 68999999999999998876 56899999999987776656677
Q ss_pred CeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------
Q 010754 359 PTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD------- 430 (502)
Q Consensus 359 ~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~------- 430 (502)
.+.-+.|+|++ .|+++..|+..++|+....-......-..+.|...+|+|+|++|+-.+. |.-++|.+...
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFL 318 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcccc
Confidence 88999998865 5778889999999965443222222223458999999999997654432 22344443210
Q ss_pred --------eeEEEec-----c----CCCcEEEEEEccCCC
Q 010754 431 --------KYVHDLR-----E----HSKEIYTIRWSPTGS 453 (502)
Q Consensus 431 --------~~~~~~~-----~----h~~~i~~v~~sp~g~ 453 (502)
.++..+. . -.+++.+++|.|.|.
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe 358 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE 358 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC
Confidence 1111111 1 146789999999998
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-13 Score=117.73 Aligned_cols=154 Identities=20% Similarity=0.412 Sum_probs=111.8
Q ss_pred eEEEEECCCCCEEEEEEC----------CCeEEEEEC--CCceEEEecC-ccCCeEEEEEecCCCEEEEE--ecCCeEEE
Q 010754 277 VTTLDWNGEGTLLATGSY----------DGQARIWST--NGDLKCTLSK-HKGPIFSLKWNKKGDYLLTG--SCDKTAIV 341 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~----------dg~i~iwd~--~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~--~~d~~i~~ 341 (502)
-..+.|+++|++|++-.. -|...+|.+ .+.....+.- ..++|.+++|+|+|+.|+++ ..++.|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 456889999987765543 134455544 3444444432 44579999999999987654 46789999
Q ss_pred EEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeC---CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSST---DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
||++ ++.+..+ ....+..+.|+|.+. +++++. .|.|.+||+++.+.+.++. | ..++.++|+|+|++|++++
T Consensus 88 yd~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 88 YDVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EcCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEE
Confidence 9996 5555544 456788999998775 555543 4679999999888887775 3 3478999999999999987
Q ss_pred C------CCcEEEEECCCCeeEEEe
Q 010754 418 D------DVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 418 ~------dg~i~iwd~~~~~~~~~~ 436 (502)
. |+.++||+.. |+++...
T Consensus 163 t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred eccceeccccEEEEEec-CeEeEec
Confidence 4 7889999974 6666544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-13 Score=127.95 Aligned_cols=251 Identities=13% Similarity=0.221 Sum_probs=173.1
Q ss_pred CCCceEEEEEcCCCCe-EEEEeCCCcEEEEecCCCCccC--CCCCCCceeEEEe-------------eecCc-------c
Q 010754 214 HTSEVCACAWSPAGSL-LASGSGDSTARIWTIADGTSNG--GAQNGPLNVLVLK-------------HVKGR-------T 270 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~-l~sgs~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~-------------~~~~~-------~ 270 (502)
|....+.|..+|||++ +|||..--.|++||+.+-.+.- .+....+....+. .+..+ .
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 4566778999999985 6777788899999998643211 1111111111110 00000 0
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce
Q 010754 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 349 (502)
......-..|+++.-..-|++++....|+-++++ |..+..+....+.++++..++...+|++|+.+|.|-.||.++...
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 0111223445555433334555555677777776 566666777779999999999999999999999999999998876
Q ss_pred EEEEee------ccC-----CeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCC--CCEEE
Q 010754 350 KQQFEF------HSG-----PTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPT--GSLLA 414 (502)
Q Consensus 350 ~~~~~~------~~~-----~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~--g~~la 414 (502)
+..+.. +.+ .|+++.|++++ .+++|...|.+.|||++..+|+..-. +..-+|..+.|.+. +..|+
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE
Confidence 666543 222 48999998854 59999999999999999999876543 22457999999876 44555
Q ss_pred EEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEE
Q 010754 415 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLY 473 (502)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~i 473 (502)
|.. ...++|||-.+|+....+. .+..+..+|+-|++. ++++|--+..+..
T Consensus 290 S~D-k~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sG-------m~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 290 SMD-KRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSG-------MFFTANESSKMHT 339 (703)
T ss_pred ecc-hHHhhhcccccCCceeecc-ccCCcCceeeecCCc-------eEEEecCCCccee
Confidence 543 4579999999999988887 445699999999987 6777766655433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.2e-14 Score=133.78 Aligned_cols=203 Identities=22% Similarity=0.353 Sum_probs=146.7
Q ss_pred cCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-Cce-EEEecCccCCeEEEEEec--CCCEEEEEecCCeEEEE
Q 010754 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDL-KCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVW 342 (502)
Q Consensus 267 ~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~-~~~~~~~~~~v~~l~~~~--~~~~l~s~~~d~~i~~w 342 (502)
.....+|.+.|.|+.|+.+|.+|++|+.|-.+.|||.- .++ ...-.+|...|.+++|-| +...+++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34567889999999999999999999999999999954 333 345578999999999998 44688899999999999
Q ss_pred EcCCC----------ceEEEEeeccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcce----------EEEecCCCc
Q 010754 343 DVKTE----------EWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPI----------KTFAGHQGE 400 (502)
Q Consensus 343 d~~~~----------~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~----------~~~~~h~~~ 400 (502)
|+... .....+..|...|-.++-.|+ ..|.+++.||+|+.+|++..... ..+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99742 233445567777777777554 46999999999999999874211 111111234
Q ss_pred EEEEEEcCC-CCEEEEEeCCCcEEEEECCC--------C----------eeEEEec-cCC-----------CcEEEEEEc
Q 010754 401 VNCVKWDPT-GSLLASCSDDVTAKIWNMKQ--------D----------KYVHDLR-EHS-----------KEIYTIRWS 449 (502)
Q Consensus 401 i~~l~~sp~-g~~las~s~dg~i~iwd~~~--------~----------~~~~~~~-~h~-----------~~i~~v~~s 449 (502)
..|+.++|. ..+||.|+.|-..++||.+. + .|+..+. +|- ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899996 45789999999999999431 1 1233332 222 126778999
Q ss_pred cCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 450 PTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 450 p~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+|. .+++.-+...+.+++.
T Consensus 283 pNGt-------ElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 283 PNGT-------ELLVSWGGEHVYLFDV 302 (758)
T ss_pred CCCc-------EEEEeeCCeEEEEEee
Confidence 9998 5555555555655543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=127.74 Aligned_cols=168 Identities=15% Similarity=0.308 Sum_probs=132.6
Q ss_pred CCCCCEEEEEECCCeEEEEECCCceEEE-----ecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCC----------
Q 010754 283 NGEGTLLATGSYDGQARIWSTNGDLKCT-----LSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKT---------- 346 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~---------- 346 (502)
.+.+--++.|-..|.|.+.|........ ..-.+..|++++|-|.+ ..|+++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 3566678888888999999854322211 11234789999999955 5677778899999997531
Q ss_pred ----Cc--------------eEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEc
Q 010754 347 ----EE--------------WKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD 407 (502)
Q Consensus 347 ----~~--------------~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~s 407 (502)
+. ++..+....+.|..++|++++. +++.+.||.++|||..+...+..++..-+...|++||
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 11 1111222345678888877654 8899999999999999988888777777889999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEcc
Q 010754 408 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 408 p~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp 450 (502)
|||+||++|++|.-|.||.+...+.+..-++|.+.|..|+|.|
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999995
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-12 Score=122.94 Aligned_cols=224 Identities=11% Similarity=0.156 Sum_probs=142.7
Q ss_pred EEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEECCC-ce
Q 010754 230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YDGQARIWSTNG-DL 307 (502)
Q Consensus 230 l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~-~~ 307 (502)
+++...|+.|.+|++.+.... ..+..+. .......++++|++++|++++ .++.|.+|+++. ..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l----------~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~ 69 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGAL----------TLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA 69 (330)
T ss_pred EEEcCCCCCEEEEEECCCCce----------eeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc
Confidence 444467899999999642110 0111111 123467889999999987775 478999999863 21
Q ss_pred EE--EecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCC-Cc---eEEEEeeccCCeEEEEecCCCE-E-EEEeCCC
Q 010754 308 KC--TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKT-EE---WKQQFEFHSGPTLDVDWRNNVS-F-ATSSTDN 378 (502)
Q Consensus 308 ~~--~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~-~~---~~~~~~~~~~~v~~v~~~~~~~-~-~~~~~d~ 378 (502)
.. ......+....++|+|++++|++++. ++.|.+|++.+ +. .+..+. +......+.++|++. + ++...++
T Consensus 70 l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~ 148 (330)
T PRK11028 70 LTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKED 148 (330)
T ss_pred eEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCC
Confidence 11 11123345678999999999888765 88999999964 22 222222 223456677877654 3 4556679
Q ss_pred eEEEEEcCCCcceEE-----Ee-cCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCC--C--eeEEEeccC------CC
Q 010754 379 MIYVCKIGENRPIKT-----FA-GHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQ--D--KYVHDLREH------SK 441 (502)
Q Consensus 379 ~i~i~d~~~~~~~~~-----~~-~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~--~--~~~~~~~~h------~~ 441 (502)
.|.+||+.+...+.. .. ........+.|+|+|++|++++. ++.|.+|++.. + +.+..+..+ ..
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~ 228 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR 228 (330)
T ss_pred EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc
Confidence 999999976432211 11 12234678999999999988876 89999999973 3 334443321 11
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEe
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWIC 476 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~ 476 (502)
....+.|+|+|. .++++. .++.+.+|..
T Consensus 229 ~~~~i~~~pdg~-------~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 229 WAADIHITPDGR-------HLYACDRTASLISVFSV 257 (330)
T ss_pred cceeEEECCCCC-------EEEEecCCCCeEEEEEE
Confidence 234688999987 555553 3567777764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-12 Score=129.24 Aligned_cols=247 Identities=23% Similarity=0.317 Sum_probs=182.9
Q ss_pred CceEEeccCCCceEEEEEcCCC---CeEEEEeCCCcEEEEecCCCCccCCCCCCC---------------ce--------
Q 010754 206 SDVTILEGHTSEVCACAWSPAG---SLLASGSGDSTARIWTIADGTSNGGAQNGP---------------LN-------- 259 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~---~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~---------------~~-------- 259 (502)
..++.|.+|..++..+.+.|.. .++.+++.||+|++||...+..+..+.... ..
T Consensus 48 ~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~ 127 (792)
T KOG1963|consen 48 ECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDY 127 (792)
T ss_pred hhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccc
Confidence 3467899999999999999964 477899999999999987654332211000 00
Q ss_pred ----------------------------------------------eEEE---------------ee--ecCccccCCCC
Q 010754 260 ----------------------------------------------VLVL---------------KH--VKGRTNEKSKD 276 (502)
Q Consensus 260 ----------------------------------------------~~~~---------------~~--~~~~~~~~~~~ 276 (502)
...+ ++ .......|...
T Consensus 128 ~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 128 SILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN 207 (792)
T ss_pred eeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhccc
Confidence 0000 00 00011135556
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECC-----CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
+++.++||+++++|+|..||.|.+|.-- ......+.-|...|.++.|+++|.+|++|+..|.+.+|.+.+++ .+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kq 286 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQ 286 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cc
Confidence 8999999999999999999999999732 23455677899999999999999999999999999999999998 55
Q ss_pred EEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecC-----------CCcEEEEEEcCCCCEEEEEeCC
Q 010754 352 QFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGH-----------QGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h-----------~~~i~~l~~sp~g~~las~s~d 419 (502)
-+..-.++|..+.+++++ .+++...|+.|.+....+.....++.|- .+-.+.++++|.-+.++-.+..
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~ 366 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP 366 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC
Confidence 566678899999998765 4677888999999887655433333321 3446788999988888899999
Q ss_pred CcEEEEECCCCeeEEEec-----c------CCCcEEEEEEccCCC
Q 010754 420 VTAKIWNMKQDKYVHDLR-----E------HSKEIYTIRWSPTGS 453 (502)
Q Consensus 420 g~i~iwd~~~~~~~~~~~-----~------h~~~i~~v~~sp~g~ 453 (502)
|.|.+||+-+.+.+..+. . +.-.|++++.+-.|+
T Consensus 367 g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs 411 (792)
T KOG1963|consen 367 GHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGS 411 (792)
T ss_pred ceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccce
Confidence 999999998877765553 1 122477888888877
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-13 Score=115.52 Aligned_cols=146 Identities=25% Similarity=0.474 Sum_probs=104.7
Q ss_pred EEEEEecCCCEEEEEec----------CCeEEEEEcCC-CceEEEEee-ccCCeEEEEecCCC-EEEEE--eCCCeEEEE
Q 010754 319 FSLKWNKKGDYLLTGSC----------DKTAIVWDVKT-EEWKQQFEF-HSGPTLDVDWRNNV-SFATS--STDNMIYVC 383 (502)
Q Consensus 319 ~~l~~~~~~~~l~s~~~----------d~~i~~wd~~~-~~~~~~~~~-~~~~v~~v~~~~~~-~~~~~--~~d~~i~i~ 383 (502)
..+.|+|+|++|++-.. -+...+|.++. +.....+.. ..++|.+++|+|++ .|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988775433 13355555532 233444443 34579999998865 45443 467799999
Q ss_pred EcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCc
Q 010754 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQ 460 (502)
Q Consensus 384 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~ 460 (502)
|++ ++.+..+. ...++.|.|+|+|++|++|+. .|.|.+||+++.+.+.... |. .++.++|+|||+
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr------- 156 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGR------- 156 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCC-------
Confidence 996 66666664 567889999999999999875 4679999999999887765 33 478999999999
Q ss_pred cEEEEeec------CceEEEEe
Q 010754 461 QLILARLI------PYFLYWIC 476 (502)
Q Consensus 461 ~l~las~~------~~~~iw~~ 476 (502)
.+++++.. ..++||.+
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred EEEEEEeccceeccccEEEEEe
Confidence 77777653 44666653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-12 Score=127.34 Aligned_cols=195 Identities=14% Similarity=0.202 Sum_probs=136.3
Q ss_pred CCCCeEEEEECCCCCEEEEEEC---CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEE-EEecCCe--EEEEEcCC
Q 010754 273 KSKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVWDVKT 346 (502)
Q Consensus 273 ~~~~v~~l~~s~~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~--i~~wd~~~ 346 (502)
+...+.+.+|+|||+.|+..+. +..|.+||+.+.....+..+.+.+...+|+|+|+.|+ +.+.++. |++||+.+
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 279 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS 279 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence 3457999999999999888764 3689999998776666667777888999999998876 5555554 77889888
Q ss_pred CceEEEEeeccCCeEEEEecCCCE-EEEEeC-C--CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC---
Q 010754 347 EEWKQQFEFHSGPTLDVDWRNNVS-FATSST-D--NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD--- 419 (502)
Q Consensus 347 ~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~-d--~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d--- 419 (502)
+... .+..+........|+|++. ++..+. + ..|+++|+..+.. ..+..+...+....|+|+|++|+..+.+
T Consensus 280 ~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~ 357 (435)
T PRK05137 280 GTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQ 357 (435)
T ss_pred CceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCc
Confidence 7654 3544555567789988765 554443 2 3688889876654 3443345567778999999999887653
Q ss_pred CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC-c---eEEEEeee
Q 010754 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP-Y---FLYWICSI 478 (502)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~-~---~~iw~~~~ 478 (502)
..|.+||+.++. ...+. ....+..+.|+|||+ .++.++... . ..+|..++
T Consensus 358 ~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~-------~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 358 FSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGR-------VIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred eEEEEEECCCCc-eEecc-CCCCCCCCeECCCCC-------EEEEEEccCCCCCcceEEEEEC
Confidence 358888876544 33333 223477889999998 555554432 2 35666544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-12 Score=128.05 Aligned_cols=194 Identities=14% Similarity=0.148 Sum_probs=133.7
Q ss_pred CCCeEEEEECCCCCEEEEEECC---CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEE-EEecCC--eEEEEEcCCC
Q 010754 274 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDK--TAIVWDVKTE 347 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~--~i~~wd~~~~ 347 (502)
...+.+.+|+|||+.|+.++.. ..|.+|++.+.....+....+...++.|+|+|+.|+ +.+.+| .|++||+.++
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g 282 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR 282 (433)
T ss_pred CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC
Confidence 4468899999999999988744 469999998766555555566667889999998776 445555 5999999888
Q ss_pred ceEEEEeeccCCeEEEEecCCCE-EEEEeC-CC--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC---
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVS-FATSST-DN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--- 420 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg--- 420 (502)
.... +..+........|++++. ++.++. ++ .|+++++.+++.. .+..+......++|+|+|++|+..+.++
T Consensus 283 ~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~ 360 (433)
T PRK04922 283 QLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYNARASVSPDGKKIAMVHGSGGQY 360 (433)
T ss_pred CeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEECCCCce
Confidence 7543 444544556789988765 554443 34 4777777666543 3333334455789999999998766543
Q ss_pred cEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-CceEEEEeee
Q 010754 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWICSI 478 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~~~~ 478 (502)
.|.+||+.+++.. .+. +........|+|||. .++..+.. +...+|..+.
T Consensus 361 ~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~-------~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 361 RIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS-------MVLYATREGGRGVLAAVST 410 (433)
T ss_pred eEEEEECCCCCeE-ECC-CCCCCCCceECCCCC-------EEEEEEecCCceEEEEEEC
Confidence 5999999887754 443 333456789999998 55554443 4556666544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=128.74 Aligned_cols=170 Identities=21% Similarity=0.265 Sum_probs=128.5
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC-CEEEEEECCCeEEEEECC
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATGSYDGQARIWSTN 304 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g-~~l~s~~~dg~i~iwd~~ 304 (502)
.+--|+.|-.-|.|.+.|....+... + +.....-....|+|+.|-|.+ ..++++-.+|.+.+||..
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sk-l------------fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSK-L------------FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHH-h------------hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence 45567777777888888765422110 0 111111123579999999954 466777788999999742
Q ss_pred C---------------ce--------------EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee
Q 010754 305 G---------------DL--------------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 305 ~---------------~~--------------~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 355 (502)
- .. +..+.-..+.|..++|+|||++|++.+.||.++|||..+.+++..++.
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS 330 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS 330 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh
Confidence 1 00 011112345788999999999999999999999999999888777777
Q ss_pred ccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcC
Q 010754 356 HSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP 408 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp 408 (502)
.-+...+++|+|+++ +++|+.|..|.||.+...+.+..-.+|.++|+.|+|+|
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 778899999999876 77899999999999999999999999999999999984
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-12 Score=118.29 Aligned_cols=226 Identities=15% Similarity=0.218 Sum_probs=168.5
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC-E
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-L 288 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~-~ 288 (502)
...+.+++|..++.. ++ .|++|-.+|.+.+|....+... .. ....+.. ...+..|.-++... +
T Consensus 100 ~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~h----ss--~l~~la~--------g~g~~~~r~~~~~p~I 163 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLH----SS--KLIKLAT--------GPGLYDVRQTDTDPYI 163 (412)
T ss_pred ccccccccccchhhc-CC-EEEEEecCCcEEEEeccCCccc----cc--cceeeec--------CCceeeeccCCCCCce
Confidence 444556777776654 34 5777788899999998854321 00 0011111 13466666666444 5
Q ss_pred EEEEECC--CeEEEEECCCceEEEecCc-----------cCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCC-ceEEE
Q 010754 289 LATGSYD--GQARIWSTNGDLKCTLSKH-----------KGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTE-EWKQQ 352 (502)
Q Consensus 289 l~s~~~d--g~i~iwd~~~~~~~~~~~~-----------~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~-~~~~~ 352 (502)
+++|+.. ..+.|||+++. ...+.+- .--++++.|-+. ...|++++.-+.+++||.+.+ +++..
T Consensus 164 va~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred EecCchhcccceeeeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 5668887 78999998865 4433321 123567888887 789999999999999999865 46788
Q ss_pred EeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEE-EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 353 FEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~-~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
|.....+++++...+. +.+++|..-+.+..||++.++.+.. +.+-.+.|++|..+|.+++||+|+-|..|||+|+.+.
T Consensus 243 fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred eccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 8888889999988664 5578888999999999999988776 8888999999999999999999999999999999998
Q ss_pred eeEEEeccCCCcEEEEEEccCCC
Q 010754 431 KYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
++++... -.+.++.|-+.++-+
T Consensus 323 kll~kvY-vKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 323 KLLHKVY-VKSRLTFILLRDDVN 344 (412)
T ss_pred hhhhhhh-hhccccEEEecCCcc
Confidence 8776655 344578888877654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-14 Score=143.40 Aligned_cols=198 Identities=20% Similarity=0.333 Sum_probs=157.5
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC
Q 010754 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (502)
Q Consensus 269 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~ 347 (502)
...+|-..|+|+.|...|.++++|+.|..++||..++ .+.....+|.+.|+.++.+.+...+++++.|..|++|.+.++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 3456778899999999999999999999999999764 566788999999999999999889999999999999999999
Q ss_pred ceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCc------c--------eEEEe----------c------C
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR------P--------IKTFA----------G------H 397 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~------~--------~~~~~----------~------h 397 (502)
.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.- + +..+. + .
T Consensus 265 ~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred chHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 9999999999999999999865 77899999999987110 0 00000 0 0
Q ss_pred CCcEEEEEEcCCCC-----------EEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe
Q 010754 398 QGEVNCVKWDPTGS-----------LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR 466 (502)
Q Consensus 398 ~~~i~~l~~sp~g~-----------~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las 466 (502)
...+-+++|...+- +.+++-.+..+++|++.+|.+++.+.+|...++.+.++|-.+. .-+.|+
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r------i~msag 415 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR------IAMSAG 415 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH------hhhhcc
Confidence 01122233333333 3334445667899999999999999999999999999998771 236678
Q ss_pred ecCceEEEE
Q 010754 467 LIPYFLYWI 475 (502)
Q Consensus 467 ~~~~~~iw~ 475 (502)
.|+...||+
T Consensus 416 ~dgst~iwd 424 (1113)
T KOG0644|consen 416 YDGSTIIWD 424 (1113)
T ss_pred CCCceEeee
Confidence 889999996
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-12 Score=113.56 Aligned_cols=235 Identities=17% Similarity=0.309 Sum_probs=162.8
Q ss_pred CceEEEEEcCCCCe-EEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE-EEEEE
Q 010754 216 SEVCACAWSPAGSL-LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL-LATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~-l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~-l~s~~ 293 (502)
+.|.-+.|..+.-+ |.....|+.|.+|++...+.... .......+.+++|||||+. |.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck-----------------Ideg~agls~~~WSPdgrhiL~tse 111 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK-----------------IDEGQAGLSSISWSPDGRHILLTSE 111 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE-----------------eccCCCcceeeeECCCcceEeeeec
Confidence 56788899988754 55557788999999876442211 1223467999999999965 45566
Q ss_pred CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC------------------------------------C
Q 010754 294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD------------------------------------K 337 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------------------------------------~ 337 (502)
.+-.|.+|.+.++....+.-.+..+..++|+|+|++.+.++.- .
T Consensus 112 F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~ 191 (447)
T KOG4497|consen 112 FDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN 191 (447)
T ss_pred ceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc
Confidence 7889999999887776666666777899999999987766532 2
Q ss_pred eEEEEEcCCCceEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceE------------------------
Q 010754 338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIK------------------------ 392 (502)
Q Consensus 338 ~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~------------------------ 392 (502)
.+.+||.--.-.+..+. ..-.+..+.|+| +..+++|+.|+.+++.+--+.++..
T Consensus 192 ~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ 270 (447)
T KOG4497|consen 192 WLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIV 270 (447)
T ss_pred EEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchh
Confidence 34455432211111121 234678899999 5667889999998885543322110
Q ss_pred ------------------------------------EEe------cCCCcEEEEEEcCCCCEEEEEeCC--CcEEEEECC
Q 010754 393 ------------------------------------TFA------GHQGEVNCVKWDPTGSLLASCSDD--VTAKIWNMK 428 (502)
Q Consensus 393 ------------------------------------~~~------~h~~~i~~l~~sp~g~~las~s~d--g~i~iwd~~ 428 (502)
+++ ...-.+.-++|++|..++|+-.+. +.+-+||++
T Consensus 271 ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq 350 (447)
T KOG4497|consen 271 QLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ 350 (447)
T ss_pred hhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech
Confidence 000 011235678999999999987653 679999998
Q ss_pred CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 429 ~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..+....+. ...+|....|.|... +|++.++...+.+|..
T Consensus 351 ~l~l~avLi-Qk~piraf~WdP~~p-------rL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 351 NLKLHAVLI-QKHPIRAFEWDPGRP-------RLVVCTGKSRLYFWAP 390 (447)
T ss_pred hhhhhhhhh-hccceeEEEeCCCCc-------eEEEEcCCceEEEEcC
Confidence 876644443 556899999999988 8888888888888854
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-11 Score=111.97 Aligned_cols=189 Identities=16% Similarity=0.199 Sum_probs=141.6
Q ss_pred eEEEEEcCCCCeEEEEeCCC--cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 218 VCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
|.-+-|+ ..++|..+.+. .+++.++..+..++... ....|.++.++.+ .|+++-.
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~------------------fpt~IL~VrmNr~--RLvV~Le- 105 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF------------------FPTSILAVRMNRK--RLVVCLE- 105 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe------------------cCCceEEEEEccc--eEEEEEc-
Confidence 4444454 45666665543 48888877654322110 1356999998764 5666655
Q ss_pred CeEEEEECCCceE-EEe---cCccCCeEEEEEecCCCEEEE--EecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC
Q 010754 296 GQARIWSTNGDLK-CTL---SKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (502)
Q Consensus 296 g~i~iwd~~~~~~-~~~---~~~~~~v~~l~~~~~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~ 369 (502)
..|+|||++...+ .++ ..+...+.++.+++.+.+++- ....|.|.+||+.+-+.+..+..|.+++.+++|++++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G 185 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG 185 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC
Confidence 4499999986433 332 345566777777777778884 3346899999999999999999999999999997765
Q ss_pred -EEEEEeCCCe-EEEEEcCCCcceEEEecCC--CcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 370 -SFATSSTDNM-IYVCKIGENRPIKTFAGHQ--GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 370 -~~~~~~~d~~-i~i~d~~~~~~~~~~~~h~--~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
.+++++..|+ |||+.+.+++.+..|+.-. ..|.+++|+|++++|++.|..++|+|+.+.+
T Consensus 186 ~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 186 TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 5888999887 5999999999998887443 3588999999999999999999999999854
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.6e-12 Score=113.95 Aligned_cols=240 Identities=15% Similarity=0.219 Sum_probs=172.6
Q ss_pred CceEEEEEcCCC--CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 216 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~~--~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
..|..++|.-++ ..|...+.|..+..+.+........... ........+.|..+... ...|++|.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~-----------~~~~~l~~~~I~gl~~~--dg~Litc~ 122 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDD-----------AKTVSLGTKSIKGLKLA--DGTLITCV 122 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCcccccccc-----------ccccccccccccchhhc--CCEEEEEe
Confidence 456777887654 3566555777788777776554322100 00111223456665543 33678888
Q ss_pred CCCeEEEEECC-----CceEEEecCccCCeEEEEEecCCCEEE-EEecC--CeEEEEEcCCCceEEEEeec---------
Q 010754 294 YDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCD--KTAIVWDVKTEEWKQQFEFH--------- 356 (502)
Q Consensus 294 ~dg~i~iwd~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d--~~i~~wd~~~~~~~~~~~~~--------- 356 (502)
.+|.+.+|... ......+..+ .++..|.-++...+|+ +|+.. ..+.+||+...+.+.+-..-
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV 201 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV 201 (412)
T ss_pred cCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence 99999999876 3344444444 5567777777665555 58888 88999999887443322211
Q ss_pred cCCeEEEEecC---CCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 010754 357 SGPTLDVDWRN---NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 357 ~~~v~~v~~~~---~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
.-.++++.|.+ ...|++++.-+.+++||.+.+ +|+..|.--+.+|+++...|+|+++++|..-|.+..+|+++++.
T Consensus 202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 11356777744 577999999999999999866 58999988899999999999999999999999999999999998
Q ss_pred EEE-eccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 433 VHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 433 ~~~-~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.. +++-.+.|++|..+|.++ .+..++-|..++|++.
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~-------~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHP-------VLASCGLDRYVRIHDI 319 (412)
T ss_pred eccccCCccCCcceEEEcCCCc-------eEEeeccceeEEEeec
Confidence 876 889999999999999998 4555555677777753
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-11 Score=124.12 Aligned_cols=223 Identities=14% Similarity=0.153 Sum_probs=147.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCC---CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
..+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.+++... +. . ....+...+|+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------l~-~---~~g~~~~~~~S 251 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------IT-N---FEGLNGAPAWS 251 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------cc-C---CCCCcCCeEEC
Confidence 345666777889999999999988877643 368888987764211 00 0 11234568999
Q ss_pred CCCCEEEE-EECCC--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CC--eEEEEEcCCCceEEEEeecc
Q 010754 284 GEGTLLAT-GSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 284 ~~g~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~ 357 (502)
|||+.|+. .+.+| .|.+||+.+.....+..+........|+|+|+.|+..+. ++ .|+++|+.+++..+. ....
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~ 330 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVG 330 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCC
Confidence 99998874 44455 688889887766666666666778899999998876554 33 588888887775432 2222
Q ss_pred CCeEEEEecCCCE-EEEEeC-CC--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 010754 358 GPTLDVDWRNNVS-FATSST-DN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---VTAKIWNMKQD 430 (502)
Q Consensus 358 ~~v~~v~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d---g~i~iwd~~~~ 430 (502)
.......|++++. ++..+. ++ .|.+||+.++... .+. +........|+|+|++|+..+.+ ..|.++++. +
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g 407 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-G 407 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 3334567877654 444333 33 5888998877542 332 22223356899999998877654 347777775 4
Q ss_pred eeEEEeccCCCcEEEEEEccC
Q 010754 431 KYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~ 451 (502)
.....+..+.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 408 RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CceEECcCCCCCcCCCccCCC
Confidence 444455555667888889884
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.2e-12 Score=125.02 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=126.8
Q ss_pred CCCeEEEEECCCCCEEEEEECC---CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEE--cCCC
Q 010754 274 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD--VKTE 347 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd--~~~~ 347 (502)
...+.+.+|+|||+.|+..+.. ..|.+||+.+.....+....+.+.+..|+|+|+.|+ +.+.++...||. +.++
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGS 274 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 4568899999999999887753 369999998665555555556677899999999887 566777766664 4444
Q ss_pred ceEEEEeeccCCeEEEEecCCCE-EEEEeC-CCeEEEEE--cCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC---
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVS-FATSST-DNMIYVCK--IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--- 420 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~-d~~i~i~d--~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg--- 420 (502)
. ...+..+........|++++. ++..+. ++...+|. +.++.. ..+..+........|+|+|++|+..+.++
T Consensus 275 ~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~ 352 (427)
T PRK02889 275 G-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAF 352 (427)
T ss_pred C-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcE
Confidence 4 344444455566788988765 444443 45555554 444443 22222333445688999999998877654
Q ss_pred cEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC-ceEEEE
Q 010754 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP-YFLYWI 475 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~-~~~iw~ 475 (502)
.|.+||+.+++.. .+.. ........|+|||+ .++.++..+ ...++.
T Consensus 353 ~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~-------~l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 353 KLYVQDLATGQVT-ALTD-TTRDESPSFAPNGR-------YILYATQQGGRSVLAA 399 (427)
T ss_pred EEEEEECCCCCeE-EccC-CCCccCceECCCCC-------EEEEEEecCCCEEEEE
Confidence 5999999887754 3332 23356789999998 666666543 333444
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=121.23 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=131.5
Q ss_pred CCCeEEEEECCCCCEEEEEEC---CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecCC--eEEEEEcCCC
Q 010754 274 SKDVTTLDWNGEGTLLATGSY---DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTE 347 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~--~i~~wd~~~~ 347 (502)
...+.+.+|+|||+.|+..+. +..|.+|++.+.....+....+.+..+.|+|+|+.|+.. +.+| .|++||+.++
T Consensus 198 ~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg 277 (429)
T PRK03629 198 PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG 277 (429)
T ss_pred CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 346899999999999887653 357999998866555555455556678999999988854 4444 5999999888
Q ss_pred ceEEEEeeccCCeEEEEecCCCE-EEEEeCC-C--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC---C
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVS-FATSSTD-N--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---V 420 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d-~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d---g 420 (502)
...+. ..+...+....|+|++. ++..+.+ + .|+++++.++.. ..+..+........|+|+|++|+..+.+ .
T Consensus 278 ~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~ 355 (429)
T PRK03629 278 QIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 355 (429)
T ss_pred CEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCc
Confidence 76543 33445677889988765 5555543 3 455567766544 3444444556678999999999876653 3
Q ss_pred cEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCce-EEEEee
Q 010754 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYF-LYWICS 477 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~-~iw~~~ 477 (502)
.|.+||+.+++.. .+... .......|+|||. .++.++.++.. .++..+
T Consensus 356 ~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~-------~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 356 HIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGT-------MVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred eEEEEECCCCCeE-EeCCC-CCCCCceECCCCC-------EEEEEEcCCCceEEEEEE
Confidence 5889999887643 33321 2245678999998 67777766543 344433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-12 Score=115.11 Aligned_cols=206 Identities=17% Similarity=0.223 Sum_probs=152.5
Q ss_pred ceEEec-cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~-~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
++.+.. .|...|+|++|+.....|++|..+++|.+.|+++.+.+. +.. .....+.|+.|..+|.
T Consensus 96 PI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~----------V~~-----~~~~~~~VY~m~~~P~ 160 (609)
T KOG4227|consen 96 PIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY----------VAN-----ENNNRGDVYHMDQHPT 160 (609)
T ss_pred CceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeee----------eec-----ccCcccceeecccCCC
Confidence 344433 356899999999988999999999999999999876432 111 1122458999999999
Q ss_pred CCEEEEEECCCeEEEEECCCce----EEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCc------------
Q 010754 286 GTLLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE------------ 348 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~------------ 348 (502)
.+.|++.+.+|.|.+||.+... ...+.........+.|+|.. .+|++.+..+-+-+||.+...
T Consensus 161 DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L 240 (609)
T KOG4227|consen 161 DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL 240 (609)
T ss_pred CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence 9999999999999999976432 22333445667888899865 566778888889999875321
Q ss_pred --------------------------eEEEEeecc------------------CCeEEEEecCCCEEEEEeCCCeEEEEE
Q 010754 349 --------------------------WKQQFEFHS------------------GPTLDVDWRNNVSFATSSTDNMIYVCK 384 (502)
Q Consensus 349 --------------------------~~~~~~~~~------------------~~v~~v~~~~~~~~~~~~~d~~i~i~d 384 (502)
+..-|..|. ..+.+++|..+..+++|+.+-.|++|.
T Consensus 241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWK 320 (609)
T ss_pred cccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEe
Confidence 000011111 124556777777799999999999999
Q ss_pred cCCC-----------------------cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 385 IGEN-----------------------RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 385 ~~~~-----------------------~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
+... +.+..++||..-++.+.|+|...+|++.+-...++||.-
T Consensus 321 lP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 321 LPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 8531 234678899999999999999999999999999999974
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-11 Score=122.55 Aligned_cols=221 Identities=16% Similarity=0.248 Sum_probs=147.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCC---CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
..+.+..+...+...+|+|+|++|+.++.+ ..|++|++.++... .+. .+...+.+++|+
T Consensus 181 ~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-----------~~~-------~~~~~~~~~~~s 242 (417)
T TIGR02800 181 NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-----------KVA-------SFPGMNGAPAFS 242 (417)
T ss_pred CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-----------Eee-------cCCCCccceEEC
Confidence 345666677789999999999999887654 47999999876421 000 112345678999
Q ss_pred CCCCEEEEE-ECCC--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC-C--eEEEEEcCCCceEEEEeecc
Q 010754 284 GEGTLLATG-SYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 284 ~~g~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~~ 357 (502)
|+|+.|+.. +.++ .|++|++.+.....+..+........|+|+|+.|+.++.. + .|+++|+.+++.. .+..+.
T Consensus 243 pDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~ 321 (417)
T TIGR02800 243 PDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRG 321 (417)
T ss_pred CCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCC
Confidence 999977644 4444 5888898876666666666666678999999988766543 3 6888888877643 344455
Q ss_pred CCeEEEEecCCCE-EEEEeCCC---eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC---cEEEEECCCC
Q 010754 358 GPTLDVDWRNNVS-FATSSTDN---MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV---TAKIWNMKQD 430 (502)
Q Consensus 358 ~~v~~v~~~~~~~-~~~~~~d~---~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg---~i~iwd~~~~ 430 (502)
.....+.|++++. ++.++.++ .|.+||+.++.. ..+... .......|+|+|++|+..+.++ .+++.+. .+
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g 398 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST-DG 398 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CC
Confidence 5667788887654 55555554 789999887543 333322 2345568999999988877654 3555553 34
Q ss_pred eeEEEeccCCCcEEEEEEc
Q 010754 431 KYVHDLREHSKEIYTIRWS 449 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~s 449 (502)
+....+..+.+.+..++|+
T Consensus 399 ~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 399 RFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ceeeECCCCCCCcCCCCCC
Confidence 4455555444555555553
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-12 Score=129.34 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=157.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
+.|....+.-+...++.++.+..+-+||...+......+......+ ....-+-++++.-++++|+--
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l-------------~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL-------------YSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEE-------------EeEEEEeccCcEEEEEecccc
Confidence 3344455555677888888889999999887654443333221111 113334456677799999999
Q ss_pred CeEEEEECCCce-EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE-EEeeccCCeEEEEecCCCEEEE
Q 010754 296 GQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNNVSFAT 373 (502)
Q Consensus 296 g~i~iwd~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~~~~~~ 373 (502)
+.|.+|+..... ...+.+|.+.|..+.|+.+|.+++++|.|+++++|++.+.+... ...+|...+..+++.++ .+++
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t 233 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIIT 233 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEE
Confidence 999999966332 23588999999999999999999999999999999999988776 66789999999999999 9999
Q ss_pred EeCCCeEEEEEcCCCcceEEEecCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 374 SSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 374 ~~~d~~i~i~d~~~~~~~~~~~~h~-~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
++.|-+.++|+... ..+..+.+|. ..|..++..++...++|++.||.+++|++..
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 99999999996644 4455788885 4699999999999999999999999999754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-12 Score=113.14 Aligned_cols=246 Identities=17% Similarity=0.239 Sum_probs=164.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCcc-----CCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC--E
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN-----GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT--L 288 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~--~ 288 (502)
+-|.++.|...|.+||||..+|.|.++.-...... ..++.+....-.++ .......|..+.|.++++ .
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLk-----SleieEKinkIrw~~~~n~a~ 100 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLK-----SLEIEEKINKIRWLDDGNLAE 100 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhh-----hhhhhhhhhhceecCCCCccE
Confidence 55889999999999999999999999976543210 00111110000000 011234689999998664 6
Q ss_pred EEEEECCCeEEEEECCCceE------------------------------------E-EecCccCCeEEEEEecCCCEEE
Q 010754 289 LATGSYDGQARIWSTNGDLK------------------------------------C-TLSKHKGPIFSLKWNKKGDYLL 331 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~------------------------------------~-~~~~~~~~v~~l~~~~~~~~l~ 331 (502)
++..+.|.+|++|.+..+.. . --..|.--|.++.++.++..++
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 77788899999997532100 0 0124777799999999998888
Q ss_pred EEecCCeEEEEEcCCCc-eEEEE--eec-----cCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCcc----eEEEe--
Q 010754 332 TGSCDKTAIVWDVKTEE-WKQQF--EFH-----SGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRP----IKTFA-- 395 (502)
Q Consensus 332 s~~~d~~i~~wd~~~~~-~~~~~--~~~-----~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~~----~~~~~-- 395 (502)
++ .|=.|.+|++.--. ..... ..+ ...|++..|+| .+.|+-++..|+|+++|++.... .+.|.
T Consensus 181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 76 57789999985332 11111 111 22467777877 46689999999999999995421 11111
Q ss_pred ----------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeeEEEeccCCC------------c---EEEEEEc
Q 010754 396 ----------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-KQDKYVHDLREHSK------------E---IYTIRWS 449 (502)
Q Consensus 396 ----------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~-~~~~~~~~~~~h~~------------~---i~~v~~s 449 (502)
+--..|..+.|+++|+|+++-+.- +|++||+ ...+++.++..|.. . -..++|+
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 122468889999999999987654 7999999 44556666655531 1 2457899
Q ss_pred cCCCCCCCCCccEEEEeecCceEEEE
Q 010754 450 PTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 450 p~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
-++. .+++|+....++++.
T Consensus 339 g~~~-------~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 339 GNDS-------YVMTGSYNNVFRVFN 357 (433)
T ss_pred CCcc-------eEecccccceEEEec
Confidence 8887 778888888888876
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-11 Score=120.28 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=144.3
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCC-C--cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGD-S--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
.+.+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++.. .+... .......+|+|
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-----------~lt~~-------~g~~~~~~wSP 271 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-----------KVTSF-------PGINGAPRFSP 271 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-----------EecCC-------CCCcCCeeECC
Confidence 35566667788999999999988876543 3 5788888765421 01001 12234679999
Q ss_pred CCCEEEE-EECCCe--EEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CC--eEEEEEcCCCceEEEEeeccC
Q 010754 285 EGTLLAT-GSYDGQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFEFHSG 358 (502)
Q Consensus 285 ~g~~l~s-~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~ 358 (502)
||+.|+. .+.+|. |.+||+.+.....+..+........|+|+|+.|+..+. ++ .|+++|+.+++... +.....
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~ 350 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGE 350 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCC
Confidence 9997765 455664 77778877766666666666788999999998876553 33 57777887776543 222222
Q ss_pred CeEEEEecCCCE-EEEEeC-CC--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCe
Q 010754 359 PTLDVDWRNNVS-FATSST-DN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-V--TAKIWNMKQDK 431 (502)
Q Consensus 359 ~v~~v~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-g--~i~iwd~~~~~ 431 (502)
......|++++. ++..+. ++ .|.++|+.++... .+... .......|+|+|++|+..+.+ | .+++++. ++.
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGR 427 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCC
Confidence 334567887654 434333 33 4666787777543 23222 122345799999988776653 3 3777786 566
Q ss_pred eEEEeccCCCcEEEEEEccC
Q 010754 432 YVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 432 ~~~~~~~h~~~i~~v~~sp~ 451 (502)
....+..+.+.+...+|+|-
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEECcCCCCCcCCCccCCC
Confidence 66777766677888999983
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-11 Score=115.97 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=162.0
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE--------------------CC
Q 010754 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW--------------------NG 284 (502)
Q Consensus 225 p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--------------------s~ 284 (502)
|...++|....||.+|||+..+++....+.... .-++..++..| +.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~--------------~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~ 68 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA--------------SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASL 68 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch--------------hccCcceeEEEEEEeccchHHHHhHHHHhhccC
Confidence 346789999999999999998876543222110 00122233333 12
Q ss_pred CCCEEEEEECCCeEEEEECCCceE-EEe--cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLK-CTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
+...++-|...|.|.+|++.+..+ ..+ ..|.+.|.++.++.+-..|.+++.|+.+..|+...+..++.+......+.
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 345788899999999999765443 333 47999999999999999999999999999999999999999999889999
Q ss_pred EEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC-----CCEEEEEe-CCCcEEEEECCCC----
Q 010754 362 DVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-----GSLLASCS-DDVTAKIWNMKQD---- 430 (502)
Q Consensus 362 ~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~-----g~~las~s-~dg~i~iwd~~~~---- 430 (502)
+++.++++. +++ ..+.|.+||+.+.+.+.+|.||.++|+++.|--+ |.++.++. .+..+.+|-+...
T Consensus 149 sl~is~D~~~l~~--as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk 226 (541)
T KOG4547|consen 149 SLCISPDGKILLT--ASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK 226 (541)
T ss_pred eEEEcCCCCEEEe--ccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence 999988854 344 3478999999999999999999999999999877 66666554 4666888876542
Q ss_pred eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEE
Q 010754 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLY 473 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~i 473 (502)
...+.+....-+++. ++-...+....+.+|+.-....+
T Consensus 227 s~~~sl~~~dipv~~-----ds~~~ed~~~~l~lAst~~~g~v 264 (541)
T KOG4547|consen 227 SLSCSLTVPDIPVTS-----DSGLLEDGTIPLVLASTLIPGIV 264 (541)
T ss_pred hhheeeccCCCCeEe-----ccccccccccceEEeeeccCcee
Confidence 222333322323322 22222233345677776644433
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-11 Score=123.94 Aligned_cols=206 Identities=15% Similarity=0.162 Sum_probs=151.0
Q ss_pred cCccccCCCCeEEEEECCC-CCEEEEEECCCeEEEEECCC--------ceEEEecCccCCeEEEEEecCCCEEEEEecCC
Q 010754 267 KGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 337 (502)
Q Consensus 267 ~~~~~~~~~~v~~l~~s~~-g~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~ 337 (502)
..+...|...|..++.++. +.++++|+.||+|++|+... +...++....+.+.++.+.+.++.+++++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 3455567778888888775 49999999999999999642 12334444678899999999999999999999
Q ss_pred eEEEEEcCCCc-------eEEEEee-ccCCeEEEE-e--cCCC-EEEEEeCCCeEEEEEcCCCcceEEEe--cCCCcEEE
Q 010754 338 TAIVWDVKTEE-------WKQQFEF-HSGPTLDVD-W--RNNV-SFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNC 403 (502)
Q Consensus 338 ~i~~wd~~~~~-------~~~~~~~-~~~~v~~v~-~--~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~i~~ 403 (502)
.|++.++.-.. +.+.... ..+.+.++. | .... .++.+..-+.|..||++......+++ -..+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 99999986521 1111111 223344443 2 1223 57788888999999999876655443 23578999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-cCCCcEEEEEEccCCCCCCCCCccEEEEee--cCceEEEEe
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNNPNQQLILARL--IPYFLYWIC 476 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~~~~~~~~~l~las~--~~~~~iw~~ 476 (502)
++.+|.++++++|+..|.+-+||++-+.++..+. ++..+|+.+..+|.-+ .+...+.++. .+.+.+|..
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~----~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP----QESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC----CCceEEEecccCCCceeeeec
Confidence 9999999999999999999999999999888776 5668899999888754 1224455544 355777753
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=137.91 Aligned_cols=198 Identities=16% Similarity=0.314 Sum_probs=161.9
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.++.|-..|.++.=+|...+.+||+.||.|++|....+.. +.+.+. .+ ...|+.+.|+.+|+.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----------v~~~rt-----~g-~s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----------VVCFRT-----AG-NSRVTRSRFNHQGNKF 2266 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----------EEEeec-----cC-cchhhhhhhcccCCce
Confidence 4455667899999999999999999999999999877653 222221 12 2679999999999999
Q ss_pred EEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe---cCCeEEEEEcCC--Cc-eEEEEeeccCCeEEE
Q 010754 290 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---CDKTAIVWDVKT--EE-WKQQFEFHSGPTLDV 363 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~---~d~~i~~wd~~~--~~-~~~~~~~~~~~v~~v 363 (502)
..+..||.+.+|....+.......|......+.|-. ..+++++ .++.+.+||..- +. ++. ..|.+.++++
T Consensus 2267 ~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVL 2342 (2439)
T ss_pred eeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEE
Confidence 999999999999999888888899999999999875 5666654 478999999632 22 333 7799999999
Q ss_pred EecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 364 DWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 364 ~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
.+.|... |++|+.+|.|++||++..+.++++.. ++ ...++++|+..|.|+||++.....++.+.
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9988755 88999999999999999888877764 44 56789999999999999999988887776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-13 Score=123.65 Aligned_cols=196 Identities=11% Similarity=0.156 Sum_probs=166.7
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 356 (502)
-..+.++.+|++|+.|+.-|.|-.+|..+..+..-..-...|..+.|-.+.++|+++ ..+.++||| ..|..++.+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~~ 209 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKRH 209 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhhc
Confidence 577889999999999999999999997765554444456779999998887777665 678999999 456666666543
Q ss_pred cCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 357 SGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 357 ~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
..|..+.|.|... +++++..|.+.--|+..|+.+..+..-.+.+..++-+|-.-.+-+|...|+|.+|.-...+++..
T Consensus 210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK 288 (545)
T KOG1272|consen 210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK 288 (545)
T ss_pred -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence 4688899988765 66778889999999999999999988888999999999999999999999999999999999988
Q ss_pred eccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEEEe
Q 010754 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKY 482 (502)
Q Consensus 436 ~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~~~ 482 (502)
+..|.++|.+|++.++|. +.++++.|..++||+....+.+
T Consensus 289 iLcH~g~V~siAv~~~G~-------YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 289 ILCHRGPVSSIAVDRGGR-------YMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred HHhcCCCcceEEECCCCc-------EEeecccccceeEeeecccccc
Confidence 889999999999999999 8888888999999997765533
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.9e-10 Score=106.72 Aligned_cols=242 Identities=13% Similarity=0.132 Sum_probs=147.6
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+..+......-..+.|+|||+++++++.||.|.++|+.+.+.+.. ... .....++++++||+
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~-------------i~~-----G~~~~~i~~s~DG~ 90 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT-------------IKV-----GGNPRGIAVSPDGK 90 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-------------EE------SSEEEEEEE--TTT
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-------------Eec-----CCCcceEEEcCCCC
Confidence 455554433334578999999999999999999999998774321 111 23478899999999
Q ss_pred EEEEEE-CCCeEEEEECCC-ceEEEecC-------ccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEE-EEeec
Q 010754 288 LLATGS-YDGQARIWSTNG-DLKCTLSK-------HKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQ-QFEFH 356 (502)
Q Consensus 288 ~l~s~~-~dg~i~iwd~~~-~~~~~~~~-------~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~-~~~~~ 356 (502)
+++++. ..+.+.++|.++ +.+..+.. ....+.++..+|....++..-. .+.|.+.|....+.+. .....
T Consensus 91 ~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 91 YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 998776 579999999764 44444332 2346778888888886666555 4788888876654333 22234
Q ss_pred cCCeEEEEecCCCE-EEE-EeCCCeEEEEEcCCCcceE------------------------------------------
Q 010754 357 SGPTLDVDWRNNVS-FAT-SSTDNMIYVCKIGENRPIK------------------------------------------ 392 (502)
Q Consensus 357 ~~~v~~v~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~------------------------------------------ 392 (502)
.....+..|.++++ |++ ...++.|-++|..+++.+.
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDP 250 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--T
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCc
Confidence 44567788877654 333 3455667777766654332
Q ss_pred -------------EEecCCCcEEEEEEcCCCCEEEEE----eCCCcEEEEECCCCeeEEEeccC-CCcEEEEEEccCCCC
Q 010754 393 -------------TFAGHQGEVNCVKWDPTGSLLASC----SDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSG 454 (502)
Q Consensus 393 -------------~~~~h~~~i~~l~~sp~g~~las~----s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~v~~sp~g~~ 454 (502)
++....+. ..+..+|+++++... ...++|.++|..+.+.+..+... ...+..+.|+++|.
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~- 328 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGK- 328 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSS-
T ss_pred cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCC-
Confidence 22222222 456779999999988 44589999999999888888633 33599999999998
Q ss_pred CCCCCccEEEEeecCc--eEEEE
Q 010754 455 TNNPNQQLILARLIPY--FLYWI 475 (502)
Q Consensus 455 ~~~~~~~l~las~~~~--~~iw~ 475 (502)
.+.++..+.. +.+++
T Consensus 329 ------~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 329 ------EVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp ------EEEEEEE--TTEEEEEE
T ss_pred ------EEEEEEecCCCEEEEEE
Confidence 6666666644 66664
|
... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.3e-11 Score=104.22 Aligned_cols=233 Identities=15% Similarity=0.319 Sum_probs=143.6
Q ss_pred EeccCCCceEEEEEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCC-CCCceeEEE------------ee----------
Q 010754 210 ILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQ-NGPLNVLVL------------KH---------- 265 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~-~~~~~~~~~------------~~---------- 265 (502)
.+.....++..++|||+| .+|.+..-|-.|.+|.+.+.+...... ......+.+ +.
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 344556788999999999 567777789999999998754211000 000000000 00
Q ss_pred ----ecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEE
Q 010754 266 ----VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341 (502)
Q Consensus 266 ----~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~ 341 (502)
+..+....+.+.+.+.|+|||+.|+ +||.--..+.-...-.-.+..+.|+|.+++|++|+.|+.+++
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEE---------EecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhh
Confidence 0011112233445555555554443 444211111101112246889999999999999999999888
Q ss_pred EEcCCCceEEEE------------------------------------------------------------e------e
Q 010754 342 WDVKTEEWKQQF------------------------------------------------------------E------F 355 (502)
Q Consensus 342 wd~~~~~~~~~~------------------------------------------------------------~------~ 355 (502)
.+--+.+....| + .
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn 316 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN 316 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence 643222111000 0 0
Q ss_pred ccCCeEEEEecCCCEEEEEeCCC---eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 010754 356 HSGPTLDVDWRNNVSFATSSTDN---MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~~~~~~~d~---~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
....+..++|+++..+++.-.|+ .+.+||++..+....+. ...+|....|+|....|+.+.....+++|...-..+
T Consensus 317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 01124567888888888776665 58999998876544443 457899999999999999888888899999776555
Q ss_pred EEEeccCCCcEEEEEEccCCC
Q 010754 433 VHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+..-. ..-.|..+.|.-+|.
T Consensus 396 V~vP~-~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 396 VGVPK-KGFNIQKLQWLQPGE 415 (447)
T ss_pred EecCC-CCceeeeEEecCCCc
Confidence 44332 334699999999998
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-10 Score=114.08 Aligned_cols=186 Identities=15% Similarity=0.210 Sum_probs=129.9
Q ss_pred CCeEEEEECCCCCEEEEEECC---CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEE-EecCC--eEEEEEcCCCc
Q 010754 275 KDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDK--TAIVWDVKTEE 348 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~--~i~~wd~~~~~ 348 (502)
..+...+|+|+|++|+.++.. ..|++|++.+.....+..+...+.+++|+|+|+.|+. .+.++ .|++||+.++.
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence 457888999999999988754 4799999886655555566677788999999987764 44444 58899998776
Q ss_pred eEEEEeeccCCeEEEEecCCCE-EEEEeC-CC--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC---c
Q 010754 349 WKQQFEFHSGPTLDVDWRNNVS-FATSST-DN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV---T 421 (502)
Q Consensus 349 ~~~~~~~~~~~v~~v~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg---~ 421 (502)
... +..+........|++++. ++..+. .+ .|+++++.+++. ..+..+...+..+.|+|+|++|+.++.++ .
T Consensus 270 ~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 270 LTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred EEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 433 333444455678877654 554443 22 688888877654 34444556678899999999999888775 7
Q ss_pred EEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCce
Q 010754 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYF 471 (502)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~ 471 (502)
|.+||+.++.. ..+... .......|+|+|. .++.++.++..
T Consensus 348 i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~-------~l~~~~~~~~~ 388 (417)
T TIGR02800 348 IAVMDLDGGGE-RVLTDT-GLDESPSFAPNGR-------MILYATTRGGR 388 (417)
T ss_pred EEEEeCCCCCe-EEccCC-CCCCCceECCCCC-------EEEEEEeCCCc
Confidence 89999887654 333322 2345668999998 66666665443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-10 Score=111.29 Aligned_cols=225 Identities=13% Similarity=0.080 Sum_probs=138.5
Q ss_pred eEEeccCCCceEEEEEcCCCCe--E-EEEeCCC--cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 208 VTILEGHTSEVCACAWSPAGSL--L-ASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~--l-~sgs~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
.+.|..+...+..-+|+|||+. + ++...+| .|.+.++.++.... +.. ........+|
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-----------lt~-------~~g~~~~p~w 238 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-----------ILA-------LQGNQLMPTF 238 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-----------eec-------CCCCccceEE
Confidence 3445555566778899999874 2 2444444 46666766554210 111 1223456799
Q ss_pred CCCCCEEEEEEC-CC----eEEEEECCC----ceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEE--EcCC-Cce
Q 010754 283 NGEGTLLATGSY-DG----QARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVW--DVKT-EEW 349 (502)
Q Consensus 283 s~~g~~l~s~~~-dg----~i~iwd~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~w--d~~~-~~~ 349 (502)
+|||+.|+..+. +| .+.+|++.. ................+|+|+|+.|+..+ .+|...+| ++.. +..
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 999998887653 23 334466542 22223323334456789999999887655 46655555 4432 233
Q ss_pred EEEEeeccCCeEEEEecCCCE-EEEEeC---CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC---CCcE
Q 010754 350 KQQFEFHSGPTLDVDWRNNVS-FATSST---DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTA 422 (502)
Q Consensus 350 ~~~~~~~~~~v~~v~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~---dg~i 422 (502)
...+......+....|+|++. ++..+. ...|++||+.+++... +......+....|+|||++|+..+. ...|
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 444444455667889988775 444433 2469999998887543 3323345678999999998875443 3568
Q ss_pred EEEECCCCeeEEEeccCCCcEEEEEEccCC
Q 010754 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g 452 (502)
++||+..++..... ...+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 99999887754433 345567788999865
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-10 Score=110.29 Aligned_cols=187 Identities=17% Similarity=0.254 Sum_probs=146.2
Q ss_pred CCCCEEEEEECCCeEEEEECCCc-eEEEecC---ccCCeEEEEEe--------------------cCCCEEEEEecCCeE
Q 010754 284 GEGTLLATGSYDGQARIWSTNGD-LKCTLSK---HKGPIFSLKWN--------------------KKGDYLLTGSCDKTA 339 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~---~~~~v~~l~~~--------------------~~~~~l~s~~~d~~i 339 (502)
|.+.++|....||.+++|+.... ....+.. -.+..++.+|. .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999997643 3333322 23344555552 123467778889999
Q ss_pred EEEEcCCCceEEEEe--eccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEE
Q 010754 340 IVWDVKTEEWKQQFE--FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 340 ~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~ 416 (502)
.+|++..++....+. .|.+.|.++.|..+ +.|.+++.|+.+..|+....+.+..+.+....+.+++.+|||..|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887776 48889999998654 568999999999999999999999999989999999999999999998
Q ss_pred eCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec--CceEEEE
Q 010754 417 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI--PYFLYWI 475 (502)
Q Consensus 417 s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~--~~~~iw~ 475 (502)
+. .|++||+.+++.+..|.+|.++|.++.|--+=. .. ....+|.+.. ..+.+|.
T Consensus 163 s~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~--g~-~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 163 SR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLID--GI-IGKYVLSSAAAERGITVWV 218 (541)
T ss_pred cc--eEEEEEccCceEEEEecCCCcceEEEEEEEecc--cc-ccceeeeccccccceeEEE
Confidence 75 799999999999999999999999999988711 01 1123554444 4477775
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-11 Score=105.77 Aligned_cols=250 Identities=19% Similarity=0.301 Sum_probs=184.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.++.++||.+.|+....-|...-+++.+.|.++|||--.+...- ..........+++++.++++.
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~---------------wpsI~~~mP~~~~~~~y~~e~ 80 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY---------------WPSIYHYMPSPCSAMEYVSES 80 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc---------------CchhhhhCCCCceEeeeeccc
Confidence 45778999999999999998888999999999999964432210 001111224679999999999
Q ss_pred CEEEEEECCCeEEEEECCC-----ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 287 TLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
..|++|-.+|++.=+.+.. ........|...|..+-|+.....+++.+.|..+.---.+.+..+..+..... .+
T Consensus 81 ~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-~t 159 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-AS 159 (404)
T ss_pred eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc-CC
Confidence 9999999999999887542 33455678999999999999889999999998877655555554443332111 11
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEc--CCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEecc
Q 010754 362 DVDWRNNVSFATSSTDNMIYVCKI--GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLRE 438 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~ 438 (502)
++.+.-. ....|...|.|.+..+ ..-.++.++.+|.+.+++++|.|...+|.+|..|..+.+||+.-.+- ...+.+
T Consensus 160 ~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~g 238 (404)
T KOG1409|consen 160 ALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQG 238 (404)
T ss_pred CCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeecc
Confidence 1111001 2334455566655444 34467889999999999999999999999999999999999865443 356778
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEE
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYF 480 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~ 480 (502)
|...|..+..-+.-. +++.+..|+.+.+|.++...
T Consensus 239 h~~kV~~l~~~~~t~-------~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 239 HNDKVQALSYAQHTR-------QLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred chhhhhhhhhhhhhe-------eeeeccCCCeEEEEecccee
Confidence 999999888877766 78899999999999876643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.4e-11 Score=114.81 Aligned_cols=229 Identities=17% Similarity=0.327 Sum_probs=167.8
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
-++|.||.++|.-+.|+...+.|-|...+|.|.+|-+-++.......+ +...+-|.+|+|+.+|.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiN---------------nRnKSvV~SmsWn~dG~ 128 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMIN---------------NRNKSVVVSMSWNLDGT 128 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhh---------------CcCccEEEEEEEcCCCc
Confidence 367999999999999999888999999999999999988764322111 11235699999999999
Q ss_pred EEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-------ceEEE----Eeec
Q 010754 288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-------EWKQQ----FEFH 356 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-------~~~~~----~~~~ 356 (502)
.++....||.|.+=.++|..+..-.-.......+.|+++...++.+-..|.+.+||.... .+.-. +...
T Consensus 129 kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~ 208 (1189)
T KOG2041|consen 129 KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNF 208 (1189)
T ss_pred EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCC
Confidence 999999999999888887655433222333457899999999999999999999997532 11111 1112
Q ss_pred cCCeEEEEecC---------CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC-------
Q 010754 357 SGPTLDVDWRN---------NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV------- 420 (502)
Q Consensus 357 ~~~v~~v~~~~---------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg------- 420 (502)
...+..+.|.. ...|+++-..|.+.+..-.+...-..+. ..-.|..+.|+++|.+||.|+.|.
T Consensus 209 ~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d 287 (1189)
T KOG2041|consen 209 PTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTD 287 (1189)
T ss_pred CccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccc
Confidence 23466777742 2358899999988776554433222222 235688999999999999998652
Q ss_pred --cEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 421 --TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 421 --~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.|.+|. .-|+.+.+++...+.|++++|--.|-
T Consensus 288 ~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 288 SNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred cceEEEec-cchhheEEEecCCceeeeeEEcCCce
Confidence 455555 44777888888888999999988775
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-11 Score=111.95 Aligned_cols=197 Identities=18% Similarity=0.222 Sum_probs=144.9
Q ss_pred cCCCCeEEEEECCCCCEE-EEEECCCeEEEEECCCceEE-------------Eec----------------Cc-------
Q 010754 272 EKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNGDLKC-------------TLS----------------KH------- 314 (502)
Q Consensus 272 ~~~~~v~~l~~s~~g~~l-~s~~~dg~i~iwd~~~~~~~-------------~~~----------------~~------- 314 (502)
.+...-+.|..+|||+|+ ++|.+--.|++||+..-.+. .+. -|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 456678899999999975 56677789999997531110 000 01
Q ss_pred ----cCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCc
Q 010754 315 ----KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR 389 (502)
Q Consensus 315 ----~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~ 389 (502)
...-..|+++.-..-|++++....|+-+++..|..+..|....+.+..|...+. +.+++|+.+|.|-.||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 111234555544445666667778999999999999999988899999998775 456667779999999999887
Q ss_pred ceEEEec------CCC-----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-cCCCcEEEEEEccCCCCCCC
Q 010754 390 PIKTFAG------HQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGSGTNN 457 (502)
Q Consensus 390 ~~~~~~~------h~~-----~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~~~~~ 457 (502)
.+.++.. |.+ .|+++.|+.+|-.++.|+.+|.|.|||+++.+++..-. +...+|..+.|.+.+.
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~---- 284 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ---- 284 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCC----
Confidence 7766643 222 49999999999999999999999999999998875443 4456899999998854
Q ss_pred CCccEEEEeec-CceEEEE
Q 010754 458 PNQQLILARLI-PYFLYWI 475 (502)
Q Consensus 458 ~~~~l~las~~-~~~~iw~ 475 (502)
.-.+.|.| ..++||+
T Consensus 285 ---q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 285 ---QNKVVSMDKRILKIWD 300 (703)
T ss_pred ---CceEEecchHHhhhcc
Confidence 22344444 6688895
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-09 Score=109.27 Aligned_cols=194 Identities=14% Similarity=0.157 Sum_probs=128.8
Q ss_pred CCCeEEEEECCCCCEEEEEECC---CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEE-EecCC--eEEEEEcCCC
Q 010754 274 SKDVTTLDWNGEGTLLATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDK--TAIVWDVKTE 347 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~--~i~~wd~~~~ 347 (502)
...+....|+|||+.|+..+.+ ..|.+|++.+.....+....+.+....|+|+|+.|+. .+.+| .|++||+.++
T Consensus 198 ~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~ 277 (430)
T PRK00178 198 REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR 277 (430)
T ss_pred CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 3468899999999999877644 3688999886655555555556667999999998874 44455 6888899887
Q ss_pred ceEEEEeeccCCeEEEEecCCCE-EEEEeC-C--CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-C--
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVS-FATSST-D--NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-V-- 420 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~-d--~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-g-- 420 (502)
.... +..+........|++++. ++..+. + ..|+++++.+++... +...........|+|+|++|+..+.+ +
T Consensus 278 ~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 278 QLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred CeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCce
Confidence 6543 444444566678987654 444443 3 357888887776433 22222334467899999999877653 3
Q ss_pred cEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-CceEEEEeee
Q 010754 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWICSI 478 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~~~~ 478 (502)
.|.+||+.+++.. .+. +........|+|+|. .++.++.. +...+|..++
T Consensus 356 ~l~~~dl~tg~~~-~lt-~~~~~~~p~~spdg~-------~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 356 HVAAQDLQRGSVR-ILT-DTSLDESPSVAPNGT-------MLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EEEEEECCCCCEE-Ecc-CCCCCCCceECCCCC-------EEEEEEecCCceEEEEEEC
Confidence 5888999887643 333 222233568999998 55555543 4455665544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-09 Score=95.15 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=111.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS- 293 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~- 293 (502)
..+|.++.+.++ .|++.- .+.|.||.+.+.-.. +..+.... ....+.+++=+.+..+||.-+
T Consensus 94 ~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~------------l~~~et~~--NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL------------LHVIETRS--NPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh------------eeeeeccc--CCCceEeecCCCCceEEEcCCC
Confidence 467888887754 455554 478999999853211 01111111 112244443333444555433
Q ss_pred CCCeEEEEECCCceE---EEecCccCCeEEEEEecCCCEEEEEecCCe-EEEEEcCCCceEEEEeec--cCCeEEEEecC
Q 010754 294 YDGQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKT-AIVWDVKTEEWKQQFEFH--SGPTLDVDWRN 367 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~--~~~v~~v~~~~ 367 (502)
.-|.|+|-|+..... .....|.+.|.|++.+.+|..++|+|..|+ |+|||..+|..++.+... ...+.+++|++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC
Confidence 449999999775444 778899999999999999999999999997 789999999999988753 34699999988
Q ss_pred CCE-EEEEeCCCeEEEEEcCCC
Q 010754 368 NVS-FATSSTDNMIYVCKIGEN 388 (502)
Q Consensus 368 ~~~-~~~~~~d~~i~i~d~~~~ 388 (502)
+.. +++++..|+++|+.++..
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CccEEEEEcCCCeEEEEEeecC
Confidence 766 667788899999998764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-09 Score=107.36 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=123.5
Q ss_pred CeEEEEECCCCCEE---EEEECCC--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-----CCeEEEEEcC
Q 010754 276 DVTTLDWNGEGTLL---ATGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDVK 345 (502)
Q Consensus 276 ~v~~l~~s~~g~~l---~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-----d~~i~~wd~~ 345 (502)
.+.+-+|+|||+.+ ++...+| .|.+.++.+.....+....+.....+|+|||+.|+..+. +..+.+|++.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 45677999999752 2444444 577778877666666556666778899999998886553 2234457776
Q ss_pred CC---ceEEEEeeccCCeEEEEecCCCE-EEEEe-CCCe--EEEEEcCC-CcceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 346 TE---EWKQQFEFHSGPTLDVDWRNNVS-FATSS-TDNM--IYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 346 ~~---~~~~~~~~~~~~v~~v~~~~~~~-~~~~~-~d~~--i~i~d~~~-~~~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
.+ ...+.............|+|++. ++..+ .+|. |+++++.. +.....+..+...+....|+|||+.|+..+
T Consensus 266 ~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 266 TGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 53 33333322223446779998865 55444 4554 44445542 233444555556678899999999988766
Q ss_pred CC---CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEeee
Q 010754 418 DD---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWICSI 478 (502)
Q Consensus 418 ~d---g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~~~ 478 (502)
.+ ..|.+||+.+++... +......+....|+|||. .++..+ ..+...+|.+++
T Consensus 346 ~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~-------~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 346 VIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL-------HLVYSAGNSNESELYLISL 402 (428)
T ss_pred cCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC-------EEEEEECCCCCceEEEEEC
Confidence 53 369999998887643 333334577899999998 444433 334455665443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.8e-10 Score=115.63 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=147.4
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCC-----eEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP-----IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
|....+..+...++.++.+..+.+||.....+..-..+... ..-+-++++.-++++|+.-+.|.+|+........
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 33334444567888899999999999775544333333222 1222345566789999999999999987433333
Q ss_pred EEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceE-EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 352 QFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
.+.+|.+.+.++.|+. +..+++.+.|+++++|++.+.+... +.-+|...|..++|+|+ .++|++.|.+.++|+.+
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~- 246 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN- 246 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-
Confidence 5889999999999965 5668999999999999999987765 67789999999999998 99999999999999755
Q ss_pred CeeEEEeccCCC-cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 430 DKYVHDLREHSK-EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 430 ~~~~~~~~~h~~-~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++.+..+.+|.. .|+.++..++.. .++++..|+.+++|+.
T Consensus 247 ~~~l~~y~~h~g~~iw~~~~~~~~~-------~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 247 GTQLEVYDEHSGKGIWKIAVPIGVI-------IKVTGGNDSTLKLWDL 287 (967)
T ss_pred cceehhhhhhhhcceeEEEEcCCce-------EEEeeccCcchhhhhh
Confidence 455557777754 699999999876 7888999999999963
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-10 Score=102.49 Aligned_cols=214 Identities=14% Similarity=0.231 Sum_probs=149.4
Q ss_pred CceEEEEEcCCC--CeEEEEeCCCcEEEEecCCCCccCC-----CCCCCce-----eE---------EEeeecCccccCC
Q 010754 216 SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGG-----AQNGPLN-----VL---------VLKHVKGRTNEKS 274 (502)
Q Consensus 216 ~~V~~~~~~p~~--~~l~sgs~dg~v~iw~~~~~~~~~~-----~~~~~~~-----~~---------~~~~~~~~~~~~~ 274 (502)
..|..+.|.+++ ..++..+.|.+|++|.+........ ....+.. +. .....+.....|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 458899999975 4666777899999999876432220 0000000 00 1111122345788
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCC--ce--EEEecC-----ccCCeEEEEEecCC-CEEEEEecCCeEEEEEc
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DL--KCTLSK-----HKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDV 344 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--~~--~~~~~~-----~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~ 344 (502)
..|.++.++.|+..++++. |=.|.+|+++- +. +.-... -..-|++..|+|.. +.|+-.+..|+|++-|+
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 8899999999999988876 68899998652 21 222222 23468899999954 67778889999999999
Q ss_pred CCCceE----EEE------------eeccCCeEEEEecCCCEEEEEeCCCeEEEEEc-CCCcceEEEecCCC--------
Q 010754 345 KTEEWK----QQF------------EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI-GENRPIKTFAGHQG-------- 399 (502)
Q Consensus 345 ~~~~~~----~~~------------~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~-~~~~~~~~~~~h~~-------- 399 (502)
+...+. +.| ...-..|.++.|+++++++..-.--+|.+||+ ...+++.++.-|..
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 854321 111 11223688999999988888777789999999 67788988887742
Q ss_pred ----c---EEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 400 ----E---VNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 400 ----~---i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
. -..++|+-++.+++|||....+++++...|
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 235789999999999999999999996443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-09 Score=94.59 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=141.6
Q ss_pred CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC---CCC-EEEEEECCCeEEEEECCCce-EEE
Q 010754 236 DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG---EGT-LLATGSYDGQARIWSTNGDL-KCT 310 (502)
Q Consensus 236 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---~g~-~l~s~~~dg~i~iwd~~~~~-~~~ 310 (502)
-|.+.+|++.+.+... ..... ......+..|.|+. +|. .++-+...|.|.++...... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~------l~~~q--------~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~ 110 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP------LDTLQ--------CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH 110 (339)
T ss_pred ccceEEEeecccccCc------cceee--------eecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee
Confidence 3677888887765432 00000 01134577788864 455 56667778999999755322 222
Q ss_pred ecCc---c---CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE--EEeeccCCeEEEEecC--CCEEEEEeCCCeE
Q 010754 311 LSKH---K---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ--QFEFHSGPTLDVDWRN--NVSFATSSTDNMI 380 (502)
Q Consensus 311 ~~~~---~---~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~v~~~~--~~~~~~~~~d~~i 380 (502)
+.+- + ....++.|++.+..++++..+|.+.+-+........ ..+.|.-......|+. .+.+.+|+.|+.+
T Consensus 111 L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 111 LRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred ecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceE
Confidence 2221 1 124678899999999999999999976665554433 6777888888887743 4678999999999
Q ss_pred EEEEcC-CCcceEE-EecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeEEEeccCCCcEEEEEEccCCC
Q 010754 381 YVCKIG-ENRPIKT-FAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 381 ~i~d~~-~~~~~~~-~~~h~~~i~~l~~sp-~g~~las~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
..||++ .++.+.. .+.|...|.+|.-+| .+.+|++|+.|-.|++||.++ ++++..-. -.+.|+.+.++|.-.
T Consensus 191 ~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 191 SCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIF 266 (339)
T ss_pred EEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhh
Confidence 999999 3333333 456888899998876 478999999999999999984 56665443 447899999999765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.2e-08 Score=94.79 Aligned_cols=241 Identities=13% Similarity=0.205 Sum_probs=154.4
Q ss_pred CceEEEEEcCCCCeEEEEeC----CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE
Q 010754 216 SEVCACAWSPAGSLLASGSG----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s 291 (502)
.....++++|++++|.++.. ++.|..|.+....- ....+..... .......++++|++++|++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g---------~L~~~~~~~~----~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG---------TLTLLNSVPS----GGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT---------EEEEEEEEEE----SSSCEEEEEECTTSSEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc---------eeEEeeeecc----CCCCcEEEEEecCCCEEEE
Confidence 34456889999999988877 46899998876410 0111111110 2345678999999999999
Q ss_pred EEC-CCeEEEEECCC--ceEEE--ec-----------CccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCc--eEE-
Q 010754 292 GSY-DGQARIWSTNG--DLKCT--LS-----------KHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEE--WKQ- 351 (502)
Q Consensus 292 ~~~-dg~i~iwd~~~--~~~~~--~~-----------~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~--~~~- 351 (502)
+.+ +|.|.++++.. ..... .. .......++.|+|+++++++... ...|.+|++.... ...
T Consensus 104 any~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp EETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred EEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence 985 79999999764 22221 11 12244688999999998888654 4589999987654 322
Q ss_pred -EEe-eccCCeEEEEecCCCE--EEEEeCCCeEEEEEcC--CCc--ceEEEecC------CCcEEEEEEcCCCCEEEEEe
Q 010754 352 -QFE-FHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIG--ENR--PIKTFAGH------QGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 352 -~~~-~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~--~~~--~~~~~~~h------~~~i~~l~~sp~g~~las~s 417 (502)
.+. ........+.|++++. +++.-.++.|.+|++. .+. .+..+... ......|+++|+|++|.++.
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 222 2344578899988754 5566678899999988 332 22222211 12588899999999987665
Q ss_pred -CCCcEEEEECC--CCe--eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee-cCceEEEEe
Q 010754 418 -DDVTAKIWNMK--QDK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL-IPYFLYWIC 476 (502)
Q Consensus 418 -~dg~i~iwd~~--~~~--~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~~ 476 (502)
..++|.+|++. +++ .+..+.......+.++++|+|. .|+++.. ++.+.+|..
T Consensus 264 r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~-------~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 264 RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR-------YLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS-------EEEEEETTTTEEEEEEE
T ss_pred ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC-------EEEEEecCCCeEEEEEE
Confidence 46789999983 233 3344443344579999999998 6665553 456776654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-09 Score=105.46 Aligned_cols=193 Identities=13% Similarity=0.145 Sum_probs=122.9
Q ss_pred CCCeEEEEECCCCCEEEEEECC-C--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEE-EecCCe--EEEEEcCCC
Q 010754 274 SKDVTTLDWNGEGTLLATGSYD-G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKT--AIVWDVKTE 347 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~--i~~wd~~~~ 347 (502)
...+.+..|+|||+.|+..+.+ + .|.+||+.+.....+....+......|+|+|+.|+. .+.++. |++||+.++
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg 296 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK 296 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC
Confidence 3468889999999998877543 3 588889876554444444445567899999998875 455664 888898877
Q ss_pred ceEEEEeeccCCeEEEEecCCCE-EEEEe-CC--CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC-CC--
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVS-FATSS-TD--NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV-- 420 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~-~~~~~-~d--~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~-dg-- 420 (502)
+... +..+........|++++. ++..+ .+ ..|+++|+.+++... +..........+|+|+|++|+..+. ++
T Consensus 297 ~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 297 ALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCce
Confidence 6543 444445567788988765 43333 23 357777887766433 2222233445789999999877665 34
Q ss_pred cEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-CceEEEEee
Q 010754 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWICS 477 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~~~ 477 (502)
.|.++|+.+++.. .+... .......|+|+|. .++.++.. +...+|..+
T Consensus 375 ~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~-------~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 375 NIARQDLETGAMQ-VLTST-RLDESPSVAPNGT-------MVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred EEEEEECCCCCeE-EccCC-CCCCCceECCCCC-------EEEEEEecCCceEEEEEE
Confidence 4556787777643 33322 1223458999998 55555544 444566543
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-12 Score=71.88 Aligned_cols=27 Identities=44% Similarity=0.642 Sum_probs=24.7
Q ss_pred chhhHHHHHHHHhcCCcchhhcccccc
Q 010754 7 EELNYLVFRYLQESGLLHSAFVLGYEA 33 (502)
Q Consensus 7 ~evn~li~rYlqE~g~~~sA~~~~~e~ 33 (502)
++||+|||+||+++||.+||.+|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999986
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-08 Score=98.02 Aligned_cols=190 Identities=14% Similarity=0.147 Sum_probs=125.5
Q ss_pred EEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc-eE
Q 010754 230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LK 308 (502)
Q Consensus 230 l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~-~~ 308 (502)
+++-..++.|.+.|..+.+.+. .+... ...-..+.++|||+++++++.||.|.++|+... .+
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~-------------~i~~~----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v 71 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVA-------------RIPTG----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV 71 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEE-------------EEE-S----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE
T ss_pred EEEecCCCEEEEEECCCCeEEE-------------EEcCC----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE
Confidence 3455678999999988765322 11110 111345779999999999999999999998754 44
Q ss_pred EEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEEEEeecc-------CCeEEEEecCC-CEEEEEeC-CC
Q 010754 309 CTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHS-------GPTLDVDWRNN-VSFATSST-DN 378 (502)
Q Consensus 309 ~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~-------~~v~~v~~~~~-~~~~~~~~-d~ 378 (502)
..+.. .....+++++++|+++++++ ..+.+.++|.++.+.++.+.... ..+..+..++. ..|++.-. .+
T Consensus 72 ~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~ 150 (369)
T PF02239_consen 72 ATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG 150 (369)
T ss_dssp EEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT
T ss_pred EEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC
Confidence 45544 34468899999999998775 58999999999999998876532 24566655544 44666655 48
Q ss_pred eEEEEEcCCCcceE-EEecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEec
Q 010754 379 MIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 379 ~i~i~d~~~~~~~~-~~~~h~~~i~~l~~sp~g~~las~-s~dg~i~iwd~~~~~~~~~~~ 437 (502)
.|.+.|....+.+. +............|+|++++++.+ ..++.|-++|..+++.+..+.
T Consensus 151 ~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 151 EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 88888987765443 222244567789999999987665 456789999999998876653
|
... |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-09 Score=93.64 Aligned_cols=225 Identities=19% Similarity=0.246 Sum_probs=155.6
Q ss_pred CCCceEEEEEcC---CCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 214 HTSEVCACAWSP---AGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 214 H~~~V~~~~~~p---~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
-+..++.+.|.. +|. .|+-+-.+|.|.++......... .++.+..... ......++.|++.+..+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~----------~L~~ls~~ki-~~~~~lslD~~~~~~~i 136 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV----------HLRGLSSKKI-SVVEALSLDISTSGTKI 136 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeee----------eecccchhhh-hheeeeEEEeeccCceE
Confidence 345677778875 344 56667778899998866533211 1111111000 01135688999999999
Q ss_pred EEEECCCeEEEEECC-Cc--eEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcC-CCceEEE-EeeccCCeEEE
Q 010754 290 ATGSYDGQARIWSTN-GD--LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK-TEEWKQQ-FEFHSGPTLDV 363 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~-~~--~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~-~~~~~~~-~~~~~~~v~~v 363 (502)
+++..+|.+.+-+.. .. ..+....|.-.++..+|+... +.+.+|+.|+.+..||++ .++++.+ ...|...|.+|
T Consensus 137 ~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI 216 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSI 216 (339)
T ss_pred EEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEE
Confidence 999999999955543 32 334778999999999998644 688899999999999999 3444433 45678889999
Q ss_pred EecCC--CEEEEEeCCCeEEEEEcCC-CcceEEEecCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCe-----eE
Q 010754 364 DWRNN--VSFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQDK-----YV 433 (502)
Q Consensus 364 ~~~~~--~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~i~~l~~sp~--g~~las~s~dg~i~iwd~~~~~-----~~ 433 (502)
.-++. ..+++|+-|..|++||.++ ++|+..-. -.+.|..+.++|. +.+|++|-..| .+|-++..+. ..
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~ 294 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVL 294 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheee
Confidence 87654 5699999999999999994 56665443 3478999999995 44566666665 6777765432 33
Q ss_pred EEeccCCCcEEEEEEccC
Q 010754 434 HDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 434 ~~~~~h~~~i~~v~~sp~ 451 (502)
...+.|.+-++.-.|...
T Consensus 295 ~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 295 PSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred eccccccceeeccccccc
Confidence 445578877888888443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-07 Score=88.18 Aligned_cols=226 Identities=13% Similarity=0.201 Sum_probs=142.2
Q ss_pred CceEEEEEcCCCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeE-EEee---ecCccccCCCCeEEEEECCCCCEEE
Q 010754 216 SEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVL-VLKH---VKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
.....++++|++++|+++.. +|+|.++++.....+. ... .... -............++.|+|+|++++
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~-------~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG-------EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEE-------EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccc-------eeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 44567899999999888874 8999999998742111 000 0100 0011112345688999999999988
Q ss_pred EEECC-CeEEEEECCCce--E---EEe-cCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcC--CCce--EEEEeec--
Q 010754 291 TGSYD-GQARIWSTNGDL--K---CTL-SKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVK--TEEW--KQQFEFH-- 356 (502)
Q Consensus 291 s~~~d-g~i~iwd~~~~~--~---~~~-~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~--~~~~--~~~~~~~-- 356 (502)
+.... ..|.+|+++... + ..+ ......-..+.|+|+++++++.. .+++|.++++. ++.. ++.+...
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 87643 589999876432 2 111 23345568999999999887654 57889999988 4432 2222221
Q ss_pred ----cCCeEEEEecCCCE--EEEEeCCCeEEEEEcCC--C--cceEEEecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 010754 357 ----SGPTLDVDWRNNVS--FATSSTDNMIYVCKIGE--N--RPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIW 425 (502)
Q Consensus 357 ----~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~--~--~~~~~~~~h~~~i~~l~~sp~g~~las~s~-dg~i~iw 425 (502)
......|.+++++. +++....+.|.+|++.. + +.+..+.........++++|+|++|+++.. ++.|.+|
T Consensus 240 ~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 240 GFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp TSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred cccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 11467888887765 44455678899999943 2 234444444456899999999999988774 6789999
Q ss_pred EC--CCCeeEEEec-cCCCcEEEEEE
Q 010754 426 NM--KQDKYVHDLR-EHSKEIYTIRW 448 (502)
Q Consensus 426 d~--~~~~~~~~~~-~h~~~i~~v~~ 448 (502)
++ .+|.+...-. ..-....||.|
T Consensus 320 ~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 320 DIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEeCCCCcEEEecccccCCCCEEEeC
Confidence 76 5666544332 22334566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-08 Score=96.83 Aligned_cols=226 Identities=19% Similarity=0.301 Sum_probs=150.1
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC--EEEE-----
Q 010754 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT--LLAT----- 291 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~--~l~s----- 291 (502)
++..|++|..+.|--. .+.+.+|++.+.+... . .-|...|+.+.+||.+. .+|+
T Consensus 129 W~~qfs~dEsl~arlv-~nev~f~~~~~f~~~~------------~------kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLV-SNEVQFYDLGSFKTIQ------------H------KLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred cccccccchhhhhhhh-cceEEEEecCCcccee------------e------eeeccceeeEEecCCCCCceEEEEccCC
Confidence 6888998876544332 3679999987633210 0 01245689999998743 3333
Q ss_pred EECCCeEEEEECCCce----EEEecCccCCeEEEEEecCCCEEE-E--EecCC---------eEEEEEcCCCceEEEEee
Q 010754 292 GSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGDYLL-T--GSCDK---------TAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 292 ~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~-s--~~~d~---------~i~~wd~~~~~~~~~~~~ 355 (502)
++.-+.|+||...-.. +..-.-....-..+.|++.|+-|+ . ...|. ++++.++....+.-. -.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-L~ 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-LL 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe-cC
Confidence 2334689999854111 111111223335689998886333 2 23343 688888773333322 23
Q ss_pred ccCCeEEEEecCCCE-E--EEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 010754 356 HSGPTLDVDWRNNVS-F--ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD---VTAKIWNMKQ 429 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~-~--~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d---g~i~iwd~~~ 429 (502)
..++|.++.|++.+. | +.|-.-.++.|||++. .++..| ..++-+++-|+|.|++|+.++-+ |.|-|||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 578999999988763 4 4455677899999864 344444 46778899999999999888764 8899999999
Q ss_pred CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec------CceEEEEe
Q 010754 430 DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI------PYFLYWIC 476 (502)
Q Consensus 430 ~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~------~~~~iw~~ 476 (502)
.+++..+.... .+-..|+|||+ .+++|+.. +.++||..
T Consensus 346 ~K~i~~~~a~~--tt~~eW~PdGe-------~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 346 RKLIAKFKAAN--TTVFEWSPDGE-------YFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred hhhccccccCC--ceEEEEcCCCc-------EEEEEeccccEEecCCeEEEEe
Confidence 99998887544 46789999999 88998886 45777753
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-09 Score=100.05 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=113.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE---CC
Q 010754 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS---YD 295 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~---~d 295 (502)
..+..+|.+++||.+..+....++++...... .......+ . ...-+++.|..+......+. ..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~----~kl~~~~~---v-------~~~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKG----AKLLDVSC---V-------PKRPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCc----ceeeeEee---c-------ccCcceeeeeeccceEEEEeecCCc
Confidence 34556677777777777777667776554320 00000000 0 11233444444444444443 34
Q ss_pred CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE-eeccCCeEEEEecCCCEEEEE
Q 010754 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNNVSFATS 374 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~ 374 (502)
..+.+|...........+|-+.++.++|+||+++|+++..|..|++-....-..+..| .+|..-|..++..++..++++
T Consensus 132 ~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~ 211 (390)
T KOG3914|consen 132 YSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSG 211 (390)
T ss_pred eeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeec
Confidence 5556666554555566789999999999999999999999999999877655555554 459999999999999999999
Q ss_pred eCCCeEEEEEcCCCcceEEEe
Q 010754 375 STDNMIYVCKIGENRPIKTFA 395 (502)
Q Consensus 375 ~~d~~i~i~d~~~~~~~~~~~ 395 (502)
+.|+++++||+.+++.+.++.
T Consensus 212 sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 212 SGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCCcEEEEecccCCcccccc
Confidence 999999999999999886654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-09 Score=104.77 Aligned_cols=234 Identities=16% Similarity=0.268 Sum_probs=160.1
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
....|++|+....++|+|+.||.+++..+.+......... +.....-.......+|+..|.-+.|+.+.+.|-+...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 3467999999999999999999999999987643222111 11111112345567889999999999999999999999
Q ss_pred CeEEEEECCCceE---EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-E
Q 010754 296 GQARIWSTNGDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-F 371 (502)
Q Consensus 296 g~i~iwd~~~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~ 371 (502)
|.|.+|-+-.... ..-...++.|.+++|+.+|..+.....||.|.+=.+...+. ..-.........+.|+++.. +
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccceeecccHHHH
Confidence 9999998542211 12234567799999999999999999999999887754432 11112222345788988765 4
Q ss_pred EEEeCCCeEEEEEcCCCc-------c-e---EEEecCCCcEEEEEEc--------CCCCEEEEEeCCCcEEEEECCCCee
Q 010754 372 ATSSTDNMIYVCKIGENR-------P-I---KTFAGHQGEVNCVKWD--------PTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 372 ~~~~~d~~i~i~d~~~~~-------~-~---~~~~~h~~~i~~l~~s--------p~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
+.+-..|.+.+||...+- + + ..+......|..+.|. |+...||.|-..|.+.|-.-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 455677899999976431 1 1 1111112235566664 4778999999999998876544332
Q ss_pred EEEeccCCCcEEEEEEccCCC
Q 010754 433 VHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp~g~ 453 (502)
...+. ....|..+.|+|+|.
T Consensus 252 Pvv~d-tgm~~vgakWnh~G~ 271 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNHNGA 271 (1189)
T ss_pred CeEEe-cccEeecceecCCCc
Confidence 22332 235689999999998
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-08 Score=105.46 Aligned_cols=236 Identities=13% Similarity=0.251 Sum_probs=157.3
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEE----ecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIW----TIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
..+.|.++.|-++...++.+..+|.|.+. +..+... ..... -...|.+++||||+.+|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-----------E~VG~-------vd~GI~a~~WSPD~Ell 135 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-----------EIVGS-------VDSGILAASWSPDEELL 135 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-----------EEEEE-------EcCcEEEEEECCCcCEE
Confidence 34678999999999888999999999998 4333221 11111 14579999999999999
Q ss_pred EEEECCCeEEEEECCCce----------------E--------EEecC------------------------ccCCeEEE
Q 010754 290 ATGSYDGQARIWSTNGDL----------------K--------CTLSK------------------------HKGPIFSL 321 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~----------------~--------~~~~~------------------------~~~~v~~l 321 (502)
+..+.+|++.+.+.+-.. + ..|.+ +...-..|
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I 215 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI 215 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence 999999998887531000 0 00000 22345678
Q ss_pred EEecCCCEEEEEec---C---CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCC----CeEEEEEcCCCcce
Q 010754 322 KWNKKGDYLLTGSC---D---KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD----NMIYVCKIGENRPI 391 (502)
Q Consensus 322 ~~~~~~~~l~s~~~---d---~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d----~~i~i~d~~~~~~~ 391 (502)
+|..||.+|++.+. . +.+++|+- .|....+-..-.+--..++|.|.+.++++... ..|.+|.- +|-.-
T Consensus 216 SWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrh 293 (928)
T PF04762_consen 216 SWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRH 293 (928)
T ss_pred EECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEe
Confidence 99999999998775 2 57999984 46654444433444567899998877766542 45666653 33332
Q ss_pred EEEe----cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEec-cCCCcEEEEEEccCCCCCCCCCccEEE
Q 010754 392 KTFA----GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLR-EHSKEIYTIRWSPTGSGTNNPNQQLIL 464 (502)
Q Consensus 392 ~~~~----~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~--~~~~-~h~~~i~~v~~sp~g~~~~~~~~~l~l 464 (502)
..|. .....|..+.|++++..||..-.|. |.+|-..+.... +.+. .....+..+.|+|... ..|.+
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p------~~L~v 366 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP------LRLHV 366 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC------CEEEE
Confidence 3332 2356799999999999999988665 999998876532 2333 2233455699999865 35667
Q ss_pred EeecCceEEEEe
Q 010754 465 ARLIPYFLYWIC 476 (502)
Q Consensus 465 as~~~~~~iw~~ 476 (502)
.+.++.+..+.+
T Consensus 367 ~t~~g~~~~~~~ 378 (928)
T PF04762_consen 367 LTSNGQYEIYDF 378 (928)
T ss_pred EecCCcEEEEEE
Confidence 777666655443
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=106.46 Aligned_cols=211 Identities=18% Similarity=0.233 Sum_probs=156.1
Q ss_pred eEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
...+..|.++|..++.-|+ ..-|.+++.|+.+.-.|+..+.....+ ..+. .. ....-...+++.+|..
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--------~cr~--~~-~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--------VCRE--AD-EKERVGLYTIAVDPRN 293 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--------eeec--cC-CccceeeeeEecCCCC
Confidence 3556789999999999996 567999999999999998876532211 1000 00 0001247788888865
Q ss_pred C-EEEEEECCCeEEEEECCC-------ceEEEecC------ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC--C---
Q 010754 287 T-LLATGSYDGQARIWSTNG-------DLKCTLSK------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT--E--- 347 (502)
Q Consensus 287 ~-~l~s~~~dg~i~iwd~~~-------~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~--~--- 347 (502)
. .+++|+.|-.+++||... ..+..+.. ..-.|++++|+.++.-|+++-.|-.|+++.-.. |
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5 899999999999999542 11222222 234699999998888888888999999995322 2
Q ss_pred -------ceEEE-EeeccC--CeEEEEec-C-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEE
Q 010754 348 -------EWKQQ-FEFHSG--PTLDVDWR-N-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 348 -------~~~~~-~~~~~~--~v~~v~~~-~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las 415 (502)
..+.. +++|.. .|-.+-|- | ...+++|+.-|.|.||+-.+++.+..+.+-..-|+||.=+|--.+||+
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 22223 666654 47777773 3 456778888899999999999999999887779999999999999999
Q ss_pred EeCCCcEEEEECCC
Q 010754 416 CSDDVTAKIWNMKQ 429 (502)
Q Consensus 416 ~s~dg~i~iwd~~~ 429 (502)
++-|..|+||--.+
T Consensus 454 SGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLT 467 (559)
T ss_pred cCCccceeeecCCc
Confidence 99999999998644
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-07 Score=84.04 Aligned_cols=208 Identities=19% Similarity=0.232 Sum_probs=135.1
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 010754 221 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARI 300 (502)
Q Consensus 221 ~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~i 300 (502)
++.+.+|++||.. .|..|.|-...+.-. . ....... .......=.-++||||+.+||.+...|+|++
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~----------s-i~~kcqV-pkD~~PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFS----------S-IIGKCQV-PKDPNPQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCch----------h-eeEEEec-CCCCCchheEEEECCCCcEEEEEcCCCeEEE
Confidence 5667889888876 567777766544311 0 0011111 1112334678999999999999999999999
Q ss_pred EECCCceEEEecCc-------cCCeEEEEEecC------CCEEEEEecCCeEEEEEcCCC-----ceEEEEee---ccCC
Q 010754 301 WSTNGDLKCTLSKH-------KGPIFSLKWNKK------GDYLLTGSCDKTAIVWDVKTE-----EWKQQFEF---HSGP 359 (502)
Q Consensus 301 wd~~~~~~~~~~~~-------~~~v~~l~~~~~------~~~l~s~~~d~~i~~wd~~~~-----~~~~~~~~---~~~~ 359 (502)
||+.+..+..+... ..+|..|.|.+. ...|++...+|.++-|-+..+ +....|.. ....
T Consensus 70 fdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~G 149 (282)
T PF15492_consen 70 FDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHG 149 (282)
T ss_pred EecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCc
Confidence 99887665544432 356777777542 225777788888887765332 23344443 3558
Q ss_pred eEEEEecCCCE-EEEEeC-CC----------eEEEEEcCCCcce--------------------------EEE---ecCC
Q 010754 360 TLDVDWRNNVS-FATSST-DN----------MIYVCKIGENRPI--------------------------KTF---AGHQ 398 (502)
Q Consensus 360 v~~v~~~~~~~-~~~~~~-d~----------~i~i~d~~~~~~~--------------------------~~~---~~h~ 398 (502)
|.++.|++... |++|+. .. -+..|.+-++.|- +.+ ....
T Consensus 150 i~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 150 INSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred eeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 99999988754 444432 11 3556665443221 011 1124
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 399 ~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
..|..|..||||++||+...+|.|.+|++.+-++...+..+..
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 6789999999999999999999999999988777766654433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-09 Score=93.85 Aligned_cols=245 Identities=16% Similarity=0.265 Sum_probs=157.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCc-----cCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC--CE
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTS-----NGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TL 288 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g--~~ 288 (502)
+.|+++.|...|.+|++|...|.|.+|.-....- ...++.+....-.++.+ .-...|..+.|..++ ..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl-----eieEKin~I~w~~~t~r~h 101 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL-----EIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc-----cHHHHhhheeeecCCCcce
Confidence 5588999999999999999999999998765431 11122222111111111 112358889987654 36
Q ss_pred EEEEECCCeEEEEECCCc-------------------------------------------eEE-EecCccCCeEEEEEe
Q 010754 289 LATGSYDGQARIWSTNGD-------------------------------------------LKC-TLSKHKGPIFSLKWN 324 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~-------------------------------------------~~~-~~~~~~~~v~~l~~~ 324 (502)
++..+.|.+|++|.+..+ ..+ ....|.--|.++.|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 777788999999974211 000 113466678899999
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCceE---EEEeec-----cCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcc----
Q 010754 325 KKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFH-----SGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRP---- 390 (502)
Q Consensus 325 ~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~-----~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~---- 390 (502)
.+...++++ .|-.|.+|++.-.... .-+..| ...|++..|+|. ..|.-++..|.|++.|++....
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 887777765 5778999987543211 112222 124667777774 5578888999999999985421
Q ss_pred eE------------EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeccCC------------CcE--
Q 010754 391 IK------------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD-KYVHDLREHS------------KEI-- 443 (502)
Q Consensus 391 ~~------------~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~-~~~~~~~~h~------------~~i-- 443 (502)
.+ -|.+-...|..+.|+++|+++++-+.- +|+|||++.. .++.++..|. ..|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 11 112223568889999999999987764 7999999764 4666664443 123
Q ss_pred -EEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 444 -YTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 444 -~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
..+.||-|.. .+++||.+...-++
T Consensus 340 kFeisfSgd~~-------~v~sgsy~NNfgiy 364 (460)
T COG5170 340 KFEISFSGDDK-------HVLSGSYSNNFGIY 364 (460)
T ss_pred eEEEEecCCcc-------cccccccccceeee
Confidence 3467887766 55666666665555
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-10 Score=110.53 Aligned_cols=244 Identities=20% Similarity=0.332 Sum_probs=176.0
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC--CEEEEEE
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG--TLLATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g--~~l~s~~ 293 (502)
+++.++..+|.|+-+|.++.-| +.+-|+...-. ....+.+.. .-.|..+.|+|.. .+-++..
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~---------ppr~l~h~t------pw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT---------PPRWLHHIT------PWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCCC---------CceeeeccC------cchhcceecccCCCCceeEEec
Confidence 5678899999999899988866 55667664321 111112111 1246677787743 4555555
Q ss_pred CCCeEEEEECC----CceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCc-eEEEEeeccCCeEEEEecC
Q 010754 294 YDGQARIWSTN----GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRN 367 (502)
Q Consensus 294 ~dg~i~iwd~~----~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~v~~~~ 367 (502)
....-.+|++. ...-..+.+|...|+.+.|+|+. ..+++++.|-.+..||+++.. ++..+..-...-..|.|.-
T Consensus 89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc
Confidence 56667788854 34455678999999999999966 578899999999999998764 3444444445566778843
Q ss_pred -CCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCC---------------
Q 010754 368 -NVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQ--------------- 429 (502)
Q Consensus 368 -~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~--------------- 429 (502)
+..+.+.+..+.|++||.+.+ .++..+++|...|+.+.|..- ...+.+++.||+|+.||..+
T Consensus 169 k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~pi 248 (1081)
T KOG0309|consen 169 KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPI 248 (1081)
T ss_pred cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcc
Confidence 344666677888999999976 578899999999999988753 34678999999999999642
Q ss_pred ----------------------------------------CeeEEEeccCCCcEEEEEEccCCCC---CCCCCccEEEEe
Q 010754 430 ----------------------------------------DKYVHDLREHSKEIYTIRWSPTGSG---TNNPNQQLILAR 466 (502)
Q Consensus 430 ----------------------------------------~~~~~~~~~h~~~i~~v~~sp~g~~---~~~~~~~l~las 466 (502)
.+.++.|.||+..|....|-..+.- -...+-+|++-|
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWS 328 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWS 328 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEee
Confidence 1246777888888888888776652 234567899999
Q ss_pred ecCceEEEE
Q 010754 467 LIPYFLYWI 475 (502)
Q Consensus 467 ~~~~~~iw~ 475 (502)
-|.++++|-
T Consensus 329 kD~~lrlWp 337 (1081)
T KOG0309|consen 329 KDQTLRLWP 337 (1081)
T ss_pred cCCceEeee
Confidence 999999994
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.4e-08 Score=103.26 Aligned_cols=255 Identities=16% Similarity=0.301 Sum_probs=162.3
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccC------------------------CCCCCCceeEE--Eeee-
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG------------------------GAQNGPLNVLV--LKHV- 266 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~------------------------~~~~~~~~~~~--~~~~- 266 (502)
-...|.|++||||+.+|+..+.++++.+-+-. ...+. .+++....... .+..
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 45789999999999999999999998876421 00000 00000000000 0000
Q ss_pred -----cCccccCCCCeEEEEECCCCCEEEEEEC---C---CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec
Q 010754 267 -----KGRTNEKSKDVTTLDWNGEGTLLATGSY---D---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 335 (502)
Q Consensus 267 -----~~~~~~~~~~v~~l~~s~~g~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~ 335 (502)
..... ....-..++|-.||.++|+.+. . ..|+||+.+|.+..+...-.+--.+++|.|.|++|++...
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 01111 3345678999999999999875 2 4799999998877666666666678999999999998765
Q ss_pred ---CCeEEEEEcCCCceEEEEee----ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcce--EEEec-CCCcEEEEE
Q 010754 336 ---DKTAIVWDVKTEEWKQQFEF----HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI--KTFAG-HQGEVNCVK 405 (502)
Q Consensus 336 ---d~~i~~wd~~~~~~~~~~~~----~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~-h~~~i~~l~ 405 (502)
...|.+|. ++|-....|.. ....|..+.|+.+..+++......|.+|-..+-.-. +.+.. ....+..+.
T Consensus 277 ~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 277 LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 34566676 55554444443 345789999988776555555666999998876421 11221 223455699
Q ss_pred EcCCC-CEEEEEeCCCcEEEEEC----CCC--------eeE------------------------EEeccCCCcEEEEEE
Q 010754 406 WDPTG-SLLASCSDDVTAKIWNM----KQD--------KYV------------------------HDLREHSKEIYTIRW 448 (502)
Q Consensus 406 ~sp~g-~~las~s~dg~i~iwd~----~~~--------~~~------------------------~~~~~h~~~i~~v~~ 448 (502)
|+|.. ..|...+.+|.+.++++ ..+ ..+ ..+. ...+|.+++|
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf 434 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAF 434 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEE
Confidence 99954 34666666566655442 111 001 1111 3467999999
Q ss_pred ccCCCCCCCCCccEEEEeecCceEEEEeeeE
Q 010754 449 SPTGSGTNNPNQQLILARLIPYFLYWICSIY 479 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~~~~~~iw~~~~~ 479 (502)
++++. .+.+.+.++.+.+|.+...
T Consensus 435 ~~~~~-------~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 435 SPSNS-------RFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eCCCC-------eEEEEECCCCEEEEEecCC
Confidence 99987 4788888999999986554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-10 Score=119.68 Aligned_cols=182 Identities=15% Similarity=0.253 Sum_probs=145.7
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEe-cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 352 (502)
..|.++.=+|...+.++|+.||.|++|... +..+..+ ......|+.+.|+.+|+.+..+..||.+.+|... .++...
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 458888888988999999999999999854 3333322 3344889999999999999999999999999986 566666
Q ss_pred EeeccCCeEEEEecCCCEEEEE---eCCCeEEEEEcCCCc---ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 353 FEFHSGPTLDVDWRNNVSFATS---STDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~~~~~~~---~~d~~i~i~d~~~~~---~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
.+.|.....++.|.. ..++++ +.++.+.+||..... .+. ..|.+.++++++-|..++|++|+.+|.|++||
T Consensus 2288 ~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred cccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 777888888888866 344444 357789999975332 233 77999999999999999999999999999999
Q ss_pred CCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 427 ~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
++..++++.++. |. . .+.++++++.|+++||..+
T Consensus 2365 ~rqrql~h~~~~---------~~-~-------~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------LD-T-------REYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred hHHHHHHHHhhh---------hh-h-------hheeeccCcccceEEEEcc
Confidence 999888877764 33 2 2378999999999999643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-08 Score=94.28 Aligned_cols=220 Identities=18% Similarity=0.366 Sum_probs=149.4
Q ss_pred cCCCceEEEEEcCCC--CeEEE-----EeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 213 GHTSEVCACAWSPAG--SLLAS-----GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~--~~l~s-----gs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
-|...|..+.++|.+ ..+|+ ++.-+.|+||............ .+.+ ...+=..+.|++-
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a--------~ksF------Fkadkvqm~WN~~ 228 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVA--------NKSF------FKADKVQMKWNKL 228 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhh--------hccc------cccceeEEEeccC
Confidence 467889999999963 34443 3455789999987432211110 0111 1223456789887
Q ss_pred CCE-EEEEE--CC---------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEE--EecCCeEEEEEcCCCceEE
Q 010754 286 GTL-LATGS--YD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 286 g~~-l~s~~--~d---------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s--~~~d~~i~~wd~~~~~~~~ 351 (502)
|+- |+.++ -| .+++++++++.....-..-.++|.+++|+|+++.|++ |-.-..+.|||++. .+
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~-- 305 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KP-- 305 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CE--
Confidence 763 33332 22 3688888886665555556899999999999987765 44567899999863 33
Q ss_pred EEeeccCCeEEEEecCCCE-EEEEeC---CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC------CCc
Q 010754 352 QFEFHSGPTLDVDWRNNVS-FATSST---DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD------DVT 421 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~------dg~ 421 (502)
.+....++-.++-|+|.+. ++.++. .|.|-+||+.+.+.+.++.... -+-+.|+|||.+|+|++. |+.
T Consensus 306 v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg 383 (566)
T KOG2315|consen 306 VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNG 383 (566)
T ss_pred eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCC
Confidence 3555677888899988665 444544 5789999999988888887544 445789999999998875 678
Q ss_pred EEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
++||+.. |..++.-. ..+..+.+.|-|...
T Consensus 384 ~Kiwhyt-G~~l~~~~-f~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 384 IKIWHYT-GSLLHEKM-FKSELLQVEWRPFND 413 (566)
T ss_pred eEEEEec-Cceeehhh-hhHhHhheeeeecCC
Confidence 9999964 55554332 222688899997655
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=98.34 Aligned_cols=169 Identities=13% Similarity=0.271 Sum_probs=130.4
Q ss_pred EECCC--CCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC----ceEEEEe
Q 010754 281 DWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFE 354 (502)
Q Consensus 281 ~~s~~--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~ 354 (502)
+|+-+ |-. ++.+.+-.|-+-++.++....+. .++.|.++.|...++.+..|+..|.|..+|++.+ .+.....
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl 295 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL 295 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE
Confidence 56542 334 45566778888898888777776 6788999999998999999999999999999876 3333344
Q ss_pred eccCCeEEEEec--CCCEEEEEeCCCeEEEEEcCCCcc---eEEEecCCCcEEE--EEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 355 FHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNC--VKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 355 ~~~~~v~~v~~~--~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~h~~~i~~--l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
.|...|+++... .+..+++.+.+|+|.+||++--++ +.++.||...-.- +-..+....++++++|...|||.+
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEec
Confidence 588888888763 466688889999999999997776 8999998653322 334566778889999999999999
Q ss_pred CCCeeEEEeccC----CCcEEEEEEccC
Q 010754 428 KQDKYVHDLREH----SKEIYTIRWSPT 451 (502)
Q Consensus 428 ~~~~~~~~~~~h----~~~i~~v~~sp~ 451 (502)
+.+.++.++.-. +..|.+++|...
T Consensus 376 ~~ghLl~tipf~~s~~e~d~~sv~~~sr 403 (425)
T KOG2695|consen 376 DSGHLLCTIPFPYSASEVDIPSVAFDSR 403 (425)
T ss_pred ccCceeeccCCCCccccccccceehhcc
Confidence 999999888632 334677777654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-08 Score=91.30 Aligned_cols=160 Identities=16% Similarity=0.282 Sum_probs=107.7
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE-----
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL----- 289 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l----- 289 (502)
..+++++.++++...|+.|-..|++.-+.+...-... .+......|...|..+-|+-.-..+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm-------------~~~r~~~~h~~~v~~~if~~~~e~V~s~~~ 134 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKM-------------TFLKDYLAHQARVSAIVFSLTHEWVLSTGK 134 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhc-------------chhhhhhhhhcceeeEEecCCceeEEEecc
Confidence 4678999999999999999999999888765421000 0111111222223333222222222
Q ss_pred ----------------------------------EEEECCCeEEEEEC---CCceEEEecCccCCeEEEEEecCCCEEEE
Q 010754 290 ----------------------------------ATGSYDGQARIWST---NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332 (502)
Q Consensus 290 ----------------------------------~s~~~dg~i~iwd~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~s 332 (502)
..|...|.|.+..+ .-..+..+.+|.+.+.+++|.+....|.+
T Consensus 135 dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS 214 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS 214 (404)
T ss_pred ccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe
Confidence 22333344443332 23466788899999999999999999999
Q ss_pred EecCCeEEEEEcCCCc-eEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCC
Q 010754 333 GSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGE 387 (502)
Q Consensus 333 ~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~ 387 (502)
|..|..+.+||+-..+ ......+|...|..+.+.+ -..+++++.||.|.+|+++.
T Consensus 215 g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 215 GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999996543 3345667888888887754 45688999999999999865
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-07 Score=100.24 Aligned_cols=244 Identities=10% Similarity=0.051 Sum_probs=153.9
Q ss_pred EEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCC-CCceeEEEeeecCc-cccCCCCeEEEEECCCCCEEEEEE-C
Q 010754 219 CACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQN-GPLNVLVLKHVKGR-TNEKSKDVTTLDWNGEGTLLATGS-Y 294 (502)
Q Consensus 219 ~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~v~~l~~s~~g~~l~s~~-~ 294 (502)
..+++++. +.++++-+.++.|++||...... ..+.. +.... ..+. ....-.....++++++++.|+++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~-----~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGL-----RDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCC-----CCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46788874 66778878889999999764321 10000 00000 0000 001123467899999888766665 4
Q ss_pred CCeEEEEECCCceEEEecCc-----------------cCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEEeec
Q 010754 295 DGQARIWSTNGDLKCTLSKH-----------------KGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~-----------------~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 356 (502)
++.|+++|..+..+.++.+- -.....++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~ 723 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD 723 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC
Confidence 57899999877666554321 11236799999 5566667777899999998776543 22211
Q ss_pred ---------------cCCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEec-------------C--------C
Q 010754 357 ---------------SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAG-------------H--------Q 398 (502)
Q Consensus 357 ---------------~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------h--------~ 398 (502)
-.....|++++++ .+++-+.++.|++||+.++.......+ + -
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 1134567887754 466667789999999987653211100 0 1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-------------cCCCcEEEEEEccCCCCCCCCCccEEEE
Q 010754 399 GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-------------EHSKEIYTIRWSPTGSGTNNPNQQLILA 465 (502)
Q Consensus 399 ~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-------------~h~~~i~~v~~sp~g~~~~~~~~~l~la 465 (502)
....+++++++|.++++-+.++.|++||..++....... +.-.....|+++++|. .+++-
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-------lyVaD 876 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-------LFVAD 876 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-------EEEEE
Confidence 134689999999999999999999999998876653221 1112467899999987 44444
Q ss_pred eecCceEEEEe
Q 010754 466 RLIPYFLYWIC 476 (502)
Q Consensus 466 s~~~~~~iw~~ 476 (502)
+.++.+++|+.
T Consensus 877 t~Nn~Irvid~ 887 (1057)
T PLN02919 877 TNNSLIRYLDL 887 (1057)
T ss_pred CCCCEEEEEEC
Confidence 55677788764
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.8e-10 Score=104.47 Aligned_cols=218 Identities=16% Similarity=0.267 Sum_probs=153.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+..+.||+..|..++--.+.+-+++++.|.+|++|.+....-.. ...........|..+|.++-|-.+-
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~----------~tsaCQfTY~aHkk~i~~igfL~~l 796 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI----------GTSACQFTYQAHKKPIHDIGFLADL 796 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc----------ccceeeeEhhhccCcccceeeeecc
Confidence 456678999999999877778889999999999999987532100 0011233456778899999999888
Q ss_pred CEEEEEECCCeEEEEEC-CCceEEEe--cCccCCeEEEEEec--CCCEEEEE-ecCCeEEEEEcCCCceEEEEeec----
Q 010754 287 TLLATGSYDGQARIWST-NGDLKCTL--SKHKGPIFSLKWNK--KGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFH---- 356 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~-~~~~~~~~--~~~~~~v~~l~~~~--~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~---- 356 (502)
++++++ ||.|.+||. .+...... ....+.+..++.-+ +...++++ +...+|+++|.+...+...++.-
T Consensus 797 r~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 797 RSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred ceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 887655 799999994 34333211 11122333333333 33444444 77899999999999887776543
Q ss_pred -cCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEE-EECCCCeeE
Q 010754 357 -SGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI-WNMKQDKYV 433 (502)
Q Consensus 357 -~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~i-wd~~~~~~~ 433 (502)
...+.+++..+ ++.++++-..|+|.+.|.++|+.+..++........++ .|..+.|+....|.++.+ |....+...
T Consensus 875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 23467777754 56688888999999999999998888876655555554 467788888888999999 987776655
Q ss_pred EEec
Q 010754 434 HDLR 437 (502)
Q Consensus 434 ~~~~ 437 (502)
...+
T Consensus 954 ~q~k 957 (1034)
T KOG4190|consen 954 LQDK 957 (1034)
T ss_pred eccC
Confidence 5544
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-06 Score=78.67 Aligned_cols=240 Identities=13% Similarity=0.187 Sum_probs=158.9
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCC---CcEEEEecCC--CCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGD---STARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~d---g~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
.+.+.++=++|+|++++|.++..+ |.|..|.+.. +... +..........-+.++++++|+
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt---------------~ln~~~~~g~~p~yvsvd~~g~ 101 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT---------------FLNRQTLPGSPPCYVSVDEDGR 101 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE---------------EeeccccCCCCCeEEEECCCCC
Confidence 455777889999999988888654 7788887765 3211 1111111122348899999999
Q ss_pred EEEEEECC-CeEEEEECCC--ce--EEEecCccCC----------eEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEE
Q 010754 288 LLATGSYD-GQARIWSTNG--DL--KCTLSKHKGP----------IFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 288 ~l~s~~~d-g~i~iwd~~~--~~--~~~~~~~~~~----------v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~ 351 (502)
+++++.+. |.|.++-++. .+ ......|.+. +....+.|++++|++++. --.|.+|++..|+...
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~ 181 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP 181 (346)
T ss_pred EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence 99999875 7999998752 21 2223345444 888999999999998765 3479999998776433
Q ss_pred EEe---eccCCeEEEEecCCCEEE--EEeCCCeEEEEEcCCC-cceEEEec---------CCCcEEEEEEcCCCCEEEEE
Q 010754 352 QFE---FHSGPTLDVDWRNNVSFA--TSSTDNMIYVCKIGEN-RPIKTFAG---------HQGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 352 ~~~---~~~~~v~~v~~~~~~~~~--~~~~d~~i~i~d~~~~-~~~~~~~~---------h~~~i~~l~~sp~g~~las~ 416 (502)
.-. .......-|.|+|+..++ ++--+++|.+|..... ..+..+.. -......|.++|+|++|.++
T Consensus 182 ~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 182 ADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred ccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEe
Confidence 211 234467889999998854 5567899999998874 22222221 12457789999999999887
Q ss_pred eC-CCcEEEEECCC--CeeE--EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-CceEEE
Q 010754 417 SD-DVTAKIWNMKQ--DKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYW 474 (502)
Q Consensus 417 s~-dg~i~iwd~~~--~~~~--~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw 474 (502)
.. ...|-++.+.. +++. .....+...-+...|+|.|. .|+.+.-+ ..+.++
T Consensus 262 NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~-------~Liaa~q~sd~i~vf 318 (346)
T COG2706 262 NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR-------FLIAANQKSDNITVF 318 (346)
T ss_pred cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC-------EEEEEccCCCcEEEE
Confidence 64 44788887754 3322 22223444467888999887 55555544 334444
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.7e-10 Score=112.52 Aligned_cols=214 Identities=17% Similarity=0.254 Sum_probs=159.2
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..++++.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.. ..+.+.|...|+-+.=+.+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-----------------e~s~ncH~SavT~vePs~dg 1155 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-----------------EESVNCHQSAVTLVEPSVDG 1155 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-----------------cccccccccccccccccCCc
Confidence 3567888999999999999999999999999999999998763 34556788899999989999
Q ss_pred CEEEEEECCC--eEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee----ccC
Q 010754 287 TLLATGSYDG--QARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF----HSG 358 (502)
Q Consensus 287 ~~l~s~~~dg--~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~ 358 (502)
..+++.+... ...+|+... ....++. .-.+++|+.....-+.|+....+.+||+.++..+.++.. ..-
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y 1231 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSY 1231 (1516)
T ss_pred ceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhh
Confidence 8777665433 567998753 3333332 346788887655555566667899999999987776322 112
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
.-....|+|...++. .|| .+||++..+.++.|...+..+. -.|+|+|.-++.-+. |||+++.++++....
T Consensus 1232 ~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred hccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhheeccc-ccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence 235677888877765 455 4799999988888876553333 359999999988764 899999998877653
Q ss_pred CCCcEEEEEEccCCC
Q 010754 439 HSKEIYTIRWSPTGS 453 (502)
Q Consensus 439 h~~~i~~v~~sp~g~ 453 (502)
-. -..|.|+..|.
T Consensus 1302 Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1302 LD--QCAVTFNSTGD 1314 (1516)
T ss_pred cc--ceEEEeccCcc
Confidence 33 35778888887
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-07 Score=91.65 Aligned_cols=190 Identities=12% Similarity=0.112 Sum_probs=122.6
Q ss_pred CeEEEEECCCCCE-EEEEECC---CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecC--CeEEEEEcCCCc
Q 010754 276 DVTTLDWNGEGTL-LATGSYD---GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCD--KTAIVWDVKTEE 348 (502)
Q Consensus 276 ~v~~l~~s~~g~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d--~~i~~wd~~~~~ 348 (502)
.+....|+|||+. ++..+.. ..|.++|+.+.....+....+......|+|+|+.++.. +.+ ..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 4678899999984 6654443 46888898776666665566667788999999877643 333 468888988876
Q ss_pred eEEEEeeccCCeEEEEecCCCE-EEEEeC-CC--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-----
Q 010754 349 WKQQFEFHSGPTLDVDWRNNVS-FATSST-DN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----- 419 (502)
Q Consensus 349 ~~~~~~~~~~~v~~v~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d----- 419 (502)
..+ +..+........|+|++. ++..+. .+ .|+++|+.++...+.... ... ...|+|+|++|+..+..
T Consensus 269 ~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 LTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCccc
Confidence 443 433333344567988764 444332 22 688888887765333221 111 24899999998877653
Q ss_pred ----CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-CceEEEEeee
Q 010754 420 ----VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWICSI 478 (502)
Q Consensus 420 ----g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~~~~ 478 (502)
..|.+.|+.++.. ..+... .......|+|||. .++.++.. +...++..++
T Consensus 345 ~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~-------~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGG-------SIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred CCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCC-------EEEEEEccCCcEEEEEEec
Confidence 2678888887764 344432 2334689999998 55555544 4445665444
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-07 Score=89.96 Aligned_cols=190 Identities=9% Similarity=0.046 Sum_probs=119.7
Q ss_pred ceEEEEEcCCCCe-EEEEeCC---CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 217 EVCACAWSPAGSL-LASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 217 ~V~~~~~~p~~~~-l~sgs~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.+....|+|+|+. ++..+.+ ..|.++|+.+++... +. ...+......|+|||+.|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------lt----~~~g~~~~~~~SPDG~~la~~ 250 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------IA----SSQGMLVVSDVSKDGSKLLLT 250 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------Ee----cCCCcEEeeEECCCCCEEEEE
Confidence 6788999999984 6654443 458888887764211 10 012345667899999877654
Q ss_pred E-CC--CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CC--eEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 293 S-YD--GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 293 ~-~d--g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
. .+ ..|.++++.+.....+..+........|+|+|+.|+..+. .+ .|.++|+.+++..+.... .. ....|+
T Consensus 251 ~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~S 327 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVS 327 (419)
T ss_pred EccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceEC
Confidence 3 33 5688888877666656555544456789999988776553 23 688889888776443321 11 124788
Q ss_pred CCCE-EEEEeCC---------CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-C--cEEEEECCC
Q 010754 367 NNVS-FATSSTD---------NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-V--TAKIWNMKQ 429 (502)
Q Consensus 367 ~~~~-~~~~~~d---------~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-g--~i~iwd~~~ 429 (502)
|++. ++..+.. ..|.+.|+.++.. ..+... .......|+|||+.|+..+.+ + .|.+.++..
T Consensus 328 PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 328 TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 7765 4333322 3688889887764 333322 233358899999988766543 2 366666654
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-09 Score=105.42 Aligned_cols=205 Identities=20% Similarity=0.322 Sum_probs=140.8
Q ss_pred EEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 209 TILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
..+.||+..|+.+.|+|. ...|++++.|..+..||+.+... .++.. ..-....+.+.|+-...
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------p~ys~-------~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------PFYST-------SSWRSAASQVKWNYKDP 171 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------ceeee-------ecccccCceeeecccCc
Confidence 567899999999999996 57999999999999999986432 11111 11123567889987666
Q ss_pred EEEEEECCCeEEEEECC--CceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEE-EeeccCCeEEE
Q 010754 288 LLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDV 363 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~v 363 (502)
.+++.+....|++||.+ +.....+++|...|..+.|+. ....+.+++.||+|+.||......... ......++..-
T Consensus 172 ~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~ 251 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRG 251 (1081)
T ss_pred chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceec
Confidence 66666777899999976 567888889999999999976 335788999999999999854332111 11233344444
Q ss_pred EecC--CCEEEEEe-CCCeEEEEEc---------C-CCcceEEEecCCCcEEEEEEcCCC----------CEEEEEeCCC
Q 010754 364 DWRN--NVSFATSS-TDNMIYVCKI---------G-ENRPIKTFAGHQGEVNCVKWDPTG----------SLLASCSDDV 420 (502)
Q Consensus 364 ~~~~--~~~~~~~~-~d~~i~i~d~---------~-~~~~~~~~~~h~~~i~~l~~sp~g----------~~las~s~dg 420 (502)
.+.| ++.++.-. .+..+.+++. . ..+++.+|.||.+.|....|-..+ -.|++=|.|.
T Consensus 252 r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~ 331 (1081)
T KOG0309|consen 252 RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQ 331 (1081)
T ss_pred cccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCC
Confidence 4433 12222111 1223333332 2 246899999999988776664422 2689999999
Q ss_pred cEEEEECCC
Q 010754 421 TAKIWNMKQ 429 (502)
Q Consensus 421 ~i~iwd~~~ 429 (502)
++++|-+.+
T Consensus 332 ~lrlWpI~~ 340 (1081)
T KOG0309|consen 332 TLRLWPIDS 340 (1081)
T ss_pred ceEeeeccH
Confidence 999998754
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=93.79 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=110.4
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCceE----EEecCccCCeEEEEEecCCCEEEEEecCC---eEEEEEcCCCce
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLK----CTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEW 349 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~v~~l~~~~~~~~l~s~~~d~---~i~~wd~~~~~~ 349 (502)
+..+..++.++++|++..+....+++...... .........-+++.|..+......+..-| .+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34445667888888888888777776543221 11112222334555555555555554444 455555444433
Q ss_pred EEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 350 KQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 350 ~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
..+-+|-..+++|.|+++.. ++++..|..|++-.....-.+..| -||+.-|..++.-++ ..|+|||.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 34557889999999987655 778889999999888777666665 469999999999855 56899999999999999
Q ss_pred CCCeeEEEec
Q 010754 428 KQDKYVHDLR 437 (502)
Q Consensus 428 ~~~~~~~~~~ 437 (502)
.+|++++++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999886654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-07 Score=97.96 Aligned_cols=213 Identities=12% Similarity=0.049 Sum_probs=132.1
Q ss_pred eEEEEEcCCCCeEEEE-eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEEECC
Q 010754 218 VCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSYD 295 (502)
Q Consensus 218 V~~~~~~p~~~~l~sg-s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~~~d 295 (502)
-..++++++++.|+.+ ...+.|+++|+.++.... +............-.......-..-..++++| ++.++++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 4788999887755554 445779999987653210 00000000000000000000012346899999 56666777778
Q ss_pred CeEEEEECCCceEEEecCc---------------cCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceEEEEee----
Q 010754 296 GQARIWSTNGDLKCTLSKH---------------KGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEF---- 355 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~---------------~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~---- 355 (502)
+.|++||..+.....+.+. -.....|+|+|+++.|+ +-+.++.|++||+.++.......+
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999876544433211 12346799999998555 445578999999987653211100
Q ss_pred ---------c--------cCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecC--------------CCcEEE
Q 010754 356 ---------H--------SGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGH--------------QGEVNC 403 (502)
Q Consensus 356 ---------~--------~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h--------------~~~i~~ 403 (502)
. ......+++.+++ .+++-..+++|++||..++.... +.+. -.....
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceE
Confidence 0 0123467776654 56677788999999998765443 2221 125778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
|+++++|+++++-+.++.|++||+.+++.
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999999989999999999988764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.3e-06 Score=78.11 Aligned_cols=232 Identities=9% Similarity=0.009 Sum_probs=132.5
Q ss_pred EcCCCCeEEEEeC----------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 223 WSPAGSLLASGSG----------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 223 ~~p~~~~l~sgs~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
++||++.|+.+.. +..|.+||..+.+....+...+.+ ..........++++|||++|++.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p----------~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP----------RFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc----------hhhccCccceEEECCCCCEEEEe
Confidence 9999987776655 789999999998754332221100 00012234578899999999987
Q ss_pred EC--CCeEEEEECCCceEE-EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC-CCce-EEEEee-cc--CCeEEE-
Q 010754 293 SY--DGQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEW-KQQFEF-HS--GPTLDV- 363 (502)
Q Consensus 293 ~~--dg~i~iwd~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~-~~~~-~~~~~~-~~--~~v~~v- 363 (502)
.. +..|.+.|+....+. .... .+...-...+++..+ +-+.||......+. +++. ...... +. .++..-
T Consensus 123 n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP 199 (352)
T TIGR02658 123 QFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP 199 (352)
T ss_pred cCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC
Confidence 73 589999998765443 3332 222222333322222 22345544443332 1221 111110 11 111000
Q ss_pred E-ecCCCEEEEEeCCCeEEEEEcCCC-----cceEEEec-------CCCcEEEEEEcCCCCEEEEEeC----------CC
Q 010754 364 D-WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAG-------HQGEVNCVKWDPTGSLLASCSD----------DV 420 (502)
Q Consensus 364 ~-~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~-------h~~~i~~l~~sp~g~~las~s~----------dg 420 (502)
. +..++..+-.+..|.|++.|+... .+...+.. ..+.+.-++++|+++.+..... .+
T Consensus 200 ~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 200 AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 1 222444444444499999996443 33333221 1223445999999998877431 24
Q ss_pred cEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEE-Ee-ecCceEEEE
Q 010754 421 TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL-AR-LIPYFLYWI 475 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~l-as-~~~~~~iw~ 475 (502)
.|.++|..+++.+..+.. ...+..|+++|||. .++. +. .++++.+.+
T Consensus 280 ~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgk-------p~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAK-------PLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEEEEECCCCeEEEEEeC-CCceeeEEECCCCC-------eEEEEeCCCCCcEEEEE
Confidence 799999999999998873 45799999999986 3343 33 346666665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.5e-06 Score=75.67 Aligned_cols=209 Identities=12% Similarity=0.160 Sum_probs=139.3
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC-CCCCEEEEEECCCe
Q 010754 220 ACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-GEGTLLATGSYDGQ 297 (502)
Q Consensus 220 ~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~~g~~l~s~~~dg~ 297 (502)
+++|.+ ++.++++-...+.|..|+..++... . .. ......+++. +++ .|+.+...+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~------------~--~~------~~~~~G~~~~~~~g-~l~v~~~~~- 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE------------V--ID------LPGPNGMAFDRPDG-RLYVADSGG- 61 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE------------E--EE------SSSEEEEEEECTTS-EEEEEETTC-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE------------E--Ee------cCCCceEEEEccCC-EEEEEEcCc-
Confidence 578998 6777888778899999998876421 0 00 1126777777 564 555555544
Q ss_pred EEEEECCCceEEEecC------ccCCeEEEEEecCCCEEEEEecC--------CeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 298 ARIWSTNGDLKCTLSK------HKGPIFSLKWNKKGDYLLTGSCD--------KTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 298 i~iwd~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
+.++|........+.. .....+.+++.|+|+..++.... |.|..++.. ++... +...-.....|
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi 139 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGI 139 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEE
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccce
Confidence 5555877654433322 23457889999999977765543 557777776 55433 33345567899
Q ss_pred EecCCCE--EEEEeCCCeEEEEEcCCCcc----eEEE---ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 364 DWRNNVS--FATSSTDNMIYVCKIGENRP----IKTF---AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 364 ~~~~~~~--~~~~~~d~~i~i~d~~~~~~----~~~~---~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
+|++++. +++-+..+.|..|++..... ...+ ....+..-.++++.+|++.++....+.|.+++.. |+.+.
T Consensus 140 ~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 140 AFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp EEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred EECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 9988764 45667888999999864322 1222 2222348899999999998888889999999977 89888
Q ss_pred EeccCCCcEEEEEEc-cCCC
Q 010754 435 DLREHSKEIYTIRWS-PTGS 453 (502)
Q Consensus 435 ~~~~h~~~i~~v~~s-p~g~ 453 (502)
.+......+++++|. |+..
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSS
T ss_pred EEcCCCCCEEEEEEECCCCC
Confidence 887555689999994 5544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-06 Score=76.46 Aligned_cols=221 Identities=10% Similarity=0.134 Sum_probs=140.8
Q ss_pred CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC---CeEEEEECCC--ceEE-
Q 010754 236 DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD---GQARIWSTNG--DLKC- 309 (502)
Q Consensus 236 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d---g~i~iwd~~~--~~~~- 309 (502)
+.-|.+|++.+..-... ..........++-|+|+|+++.|.++..+ |.|..|.++. ....
T Consensus 15 s~gI~v~~ld~~~g~l~--------------~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ 80 (346)
T COG2706 15 SQGIYVFNLDTKTGELS--------------LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF 80 (346)
T ss_pred CCceEEEEEeCcccccc--------------hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE
Confidence 46699999985331100 01111234568999999999999998765 6777777653 2222
Q ss_pred --EecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCC-CceEE--EEeeccCC----------eEEEEecCCCEEEE
Q 010754 310 --TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKT-EEWKQ--QFEFHSGP----------TLDVDWRNNVSFAT 373 (502)
Q Consensus 310 --~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~-~~~~~--~~~~~~~~----------v~~v~~~~~~~~~~ 373 (502)
.......+-..++++++|++++++.. -|.|.++-++. |.+.. ....|.+. +-...+.|++.+++
T Consensus 81 ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~ 160 (346)
T COG2706 81 LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV 160 (346)
T ss_pred eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE
Confidence 12222334488999999999998876 57899998865 43222 12224433 66777788775544
Q ss_pred Ee--CCCeEEEEEcCCCcceEEE---ecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC-eeEEEecc--------
Q 010754 374 SS--TDNMIYVCKIGENRPIKTF---AGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD-KYVHDLRE-------- 438 (502)
Q Consensus 374 ~~--~d~~i~i~d~~~~~~~~~~---~~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~-~~~~~~~~-------- 438 (502)
.. .-.+|.+|++..++....- -........|.|+|++++....++ +++|.+|..+.. ..+..++.
T Consensus 161 v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 161 VPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred EeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 43 3457899999876532211 123456789999999999887776 899999998773 22222221
Q ss_pred -CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 439 -HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 439 -h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
.......|..+|||+ ++-+|.-+.-.||.+.+
T Consensus 241 ~g~~~~aaIhis~dGr--------FLYasNRg~dsI~~f~V 273 (346)
T COG2706 241 TGTNWAAAIHISPDGR--------FLYASNRGHDSIAVFSV 273 (346)
T ss_pred CCCCceeEEEECCCCC--------EEEEecCCCCeEEEEEE
Confidence 234578899999998 34444444446665444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-07 Score=85.03 Aligned_cols=174 Identities=19% Similarity=0.173 Sum_probs=134.7
Q ss_pred EcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC-eEEE
Q 010754 223 WSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG-QARI 300 (502)
Q Consensus 223 ~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg-~i~i 300 (502)
|++ +|.+++..|. |.+-|.+...+-.+. .++...|.-..+..+++-++.|..|| .+-|
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq-------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~i 386 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ-------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGI 386 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE-------------------cCCCCceEEEEEccCCcceEEeccCCceEEE
Confidence 455 6788888887 777777655443211 12345688888888888999999999 9999
Q ss_pred EECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEE-EeCC--
Q 010754 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT-SSTD-- 377 (502)
Q Consensus 301 wd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-~~~d-- 377 (502)
+|.++..+..+...-+.|.+++.+++|++++++.....+.+.|+.++.....=....+-|+++.|+++.++++ +--+
T Consensus 387 yd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy 466 (668)
T COG4946 387 YDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGY 466 (668)
T ss_pred EecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcce
Confidence 9999999888888889999999999999999999999999999999987665555667899999999887554 3334
Q ss_pred --CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 378 --NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 378 --~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
..|++||+..++....-. ..+.=.+-+|.|++++|.--|
T Consensus 467 ~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 468999999887654332 334445678999999876543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.1e-07 Score=84.18 Aligned_cols=249 Identities=14% Similarity=0.155 Sum_probs=162.6
Q ss_pred CceEEEEEcCCCCeEEEEeCCC---------------cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE-E
Q 010754 216 SEVCACAWSPAGSLLASGSGDS---------------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-T 279 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg---------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~ 279 (502)
..|.-+.|+|.+++|.+=+..+ .+.+||+.++.....+.... . ..-.. -
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~-------------q--~~~~Wp~ 136 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS-------------Q--PYLGWPV 136 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC-------------C--cccccce
Confidence 5588899999999999876544 38899998876432221110 0 11133 5
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCceE-EEecCc-cCCeEEEEEecCC--CEEEE-----EecCCeEEEEEcCCCceE
Q 010754 280 LDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKH-KGPIFSLKWNKKG--DYLLT-----GSCDKTAIVWDVKTEEWK 350 (502)
Q Consensus 280 l~~s~~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~v~~l~~~~~~--~~l~s-----~~~d~~i~~wd~~~~~~~ 350 (502)
+.|+.+.+++|-- ....++|+++..... .-+..- ...|....|+|.+ ..|+. .+.++++++|.+..+..+
T Consensus 137 ~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l 215 (561)
T COG5354 137 LKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL 215 (561)
T ss_pred eeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee
Confidence 7788888776654 346789998632211 111111 3568888899964 34443 566889999999888777
Q ss_pred EEEeeccCCeEEEEecCCCEEEEE------------eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe-
Q 010754 351 QQFEFHSGPTLDVDWRNNVSFATS------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS- 417 (502)
Q Consensus 351 ~~~~~~~~~v~~v~~~~~~~~~~~------------~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s- 417 (502)
.+.......-..+.|.+.+.++++ -....++++++.... +.....-.++|...+|.|.++.+++++
T Consensus 216 ~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g 294 (561)
T COG5354 216 VTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISG 294 (561)
T ss_pred eeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEec
Confidence 766655555567778665543222 123567888887433 333335678999999999998877665
Q ss_pred -CCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec---CceEEEEeeeEEEeeecccccCc
Q 010754 418 -DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI---PYFLYWICSIYFKYFGTTERANL 491 (502)
Q Consensus 418 -~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~---~~~~iw~~~~~~~~~g~~~~~~~ 491 (502)
.+-++.++|++.. .... ...+.=..+.|||.+. ++++|+.+ +++-+|...-.|...|.....++
T Consensus 295 ~~pa~~s~~~lr~N-l~~~--~Pe~~rNT~~fsp~~r-------~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~ 362 (561)
T COG5354 295 YMPASVSVFDLRGN-LRFY--FPEQKRNTIFFSPHER-------YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT 362 (561)
T ss_pred ccccceeecccccc-eEEe--cCCcccccccccCccc-------EEEEecCCccccceEEeccCCceEEEEEeecCCc
Confidence 5788999999865 4333 3445567888999988 78888777 56777765545555544444443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-07 Score=78.95 Aligned_cols=218 Identities=13% Similarity=0.161 Sum_probs=142.3
Q ss_pred EEEEEcCC-----CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-CCEEEEE
Q 010754 219 CACAWSPA-----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLATG 292 (502)
Q Consensus 219 ~~~~~~p~-----~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~s~ 292 (502)
..+.|-|- -.+||.|+.-|...+|...+...... .. ..+...|+-+.=..+ .--+..+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~------------~c----d~snn~v~~~~r~cd~~~~~~i~ 134 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY------------QC----DVSNNDVTLVKRYCDLKFPLNIA 134 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccccee------------ee----cccccchhhhhhhcccccceeec
Confidence 34566662 34899999999999999886542110 00 011122222211111 2246677
Q ss_pred ECCCeEEEEECCCceEEEecCcc--CCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEE--EeeccCCeEEEEecC
Q 010754 293 SYDGQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQ--FEFHSGPTLDVDWRN 367 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~--~~~~~~~v~~v~~~~ 367 (502)
+.|.++++.++++...... .|. -.+.++.++++++++++.+....|..|.+... ..+.. .......-.+..|+.
T Consensus 135 sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~ 213 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE 213 (344)
T ss_pred cCCcceeEEEEecCcccce-eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc
Confidence 8889999998875433221 122 23889999999999999999999999988543 22222 223444556777855
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCcce-----EEEecCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEec--
Q 010754 368 -NVSFATSSTDNMIYVCKIGENRPI-----KTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLR-- 437 (502)
Q Consensus 368 -~~~~~~~~~d~~i~i~d~~~~~~~-----~~~~~h~~~i~~l~~sp~g~--~las~s~dg~i~iwd~~~~~~~~~~~-- 437 (502)
+..||++..||++.|||++..... .+-..|.+.+..+.|++.|. +|...-.-+.+.+-|+++++-...+.
T Consensus 214 ~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~ 293 (344)
T KOG4532|consen 214 NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP 293 (344)
T ss_pred CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC
Confidence 566999999999999999976432 22345889999999998664 34444445789999999987655443
Q ss_pred -----cCCC-cEEEEEEccCCC
Q 010754 438 -----EHSK-EIYTIRWSPTGS 453 (502)
Q Consensus 438 -----~h~~-~i~~v~~sp~g~ 453 (502)
.|.. .|....|+.++.
T Consensus 294 ~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 294 DDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred ccccccccccccccccccCCCc
Confidence 2322 377777777766
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.8e-09 Score=100.28 Aligned_cols=168 Identities=15% Similarity=0.205 Sum_probs=127.4
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC--------ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEE
Q 010754 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340 (502)
Q Consensus 269 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~ 340 (502)
.+.+|...|..++--.+.+.+++++.|.+|++|.++. .+..++..|+.+|.++.|-.+.+++++ .||.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcce
Confidence 4456777788887667778899999999999998652 256678899999999999988877775 489999
Q ss_pred EEEcCCCceEEEEee-----ccCCeEEEEecCCCEE-EEEeCCCeEEEEEcCCCcceEEEe-----cCCCcEEEEEEcCC
Q 010754 341 VWDVKTEEWKQQFEF-----HSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFA-----GHQGEVNCVKWDPT 409 (502)
Q Consensus 341 ~wd~~~~~~~~~~~~-----~~~~v~~v~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~-----~h~~~i~~l~~sp~ 409 (502)
+||.--++.+.++.. ..+.|.++.-.....+ +.|+...+|+++|.+...-+..++ +..+.+.+++..|.
T Consensus 808 lWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred eecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 999877766553321 1223333333233334 444788999999999887655543 34567899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 410 GSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 410 g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
|+++|.+=..|+|.+.|.++|+.+..++.
T Consensus 888 GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 888 GNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred cchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 99999999999999999999998876653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-07 Score=93.08 Aligned_cols=175 Identities=15% Similarity=0.307 Sum_probs=130.8
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 355 (502)
.++|++++ +++|+.|+.+|.|++++..+.. .+...|... ...|.++++|+.||+|.|-.+-+.+...++..
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df 111 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF 111 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence 35666664 5799999999999999988876 444445443 66899999999999999999988887777664
Q ss_pred ccCCeEEEEecCC------CEEEEEeCCCeEEEEEcC---CCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 356 HSGPTLDVDWRNN------VSFATSSTDNMIYVCKIG---ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 356 ~~~~v~~v~~~~~------~~~~~~~~d~~i~i~d~~---~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
..++..|+++|+ ..|++|+..| +.++.-+ ....+ .+..-.++|.++.|. |+++|-++++| |+|||
T Consensus 112 -~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd 185 (846)
T KOG2066|consen 112 -KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYD 185 (846)
T ss_pred -CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEe
Confidence 457888888876 5599999988 7776543 22222 345567899999997 88999999998 89999
Q ss_pred CCCCeeEEEeccCCCc------EEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 427 MKQDKYVHDLREHSKE------IYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 427 ~~~~~~~~~~~~h~~~------i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
+.+++.+..+...... -..+.|.+... ++.+...++++.
T Consensus 186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~---------LVIGW~d~v~i~ 230 (846)
T KOG2066|consen 186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR---------LVIGWGDSVKIC 230 (846)
T ss_pred ccccceeeccCCCCCCCCcccCCCceEecCCCe---------EEEecCCeEEEE
Confidence 9999888777633222 34678888766 555555554443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.3e-09 Score=93.04 Aligned_cols=157 Identities=16% Similarity=0.203 Sum_probs=119.2
Q ss_pred EEEEcCC--CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCe
Q 010754 220 ACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (502)
Q Consensus 220 ~~~~~p~--~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~ 297 (502)
.|+|+-+ +.. ++.+.+..|-+-++.++... .....++|.++.|...++++..|+.+|.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-------------------sf~sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-------------------SFQSKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeeccccc-------------------ccccchhHHHHHhcccCCeeEecccCCc
Confidence 4477753 334 45556677888888876421 1113568999999999999999999999
Q ss_pred EEEEECCCc-----eEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCce---EEEEeeccCCeEEEEe---
Q 010754 298 ARIWSTNGD-----LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEW---KQQFEFHSGPTLDVDW--- 365 (502)
Q Consensus 298 i~iwd~~~~-----~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~v~~--- 365 (502)
|..+|++.+ ......-|.+.|+++..-. ++.+|++.+.+|+|++||.+.-++ +.++.+|...-.-+-+
T Consensus 276 I~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~ 355 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK 355 (425)
T ss_pred EEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc
Confidence 999997633 2233445899999998877 778999999999999999988777 8888888665444443
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCcceEEEec
Q 010754 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAG 396 (502)
Q Consensus 366 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 396 (502)
..++.+++++.|...+||.++.+..+.+++.
T Consensus 356 ~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 356 EEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred cccceEEEccCeeEEEEEecccCceeeccCC
Confidence 2355678899999999999999998887764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-06 Score=80.41 Aligned_cols=218 Identities=14% Similarity=0.179 Sum_probs=148.4
Q ss_pred cCCCCeEEEEeCCCcEEEEecCCCCccCCCCCC-CceeEEEeeecCccccCCCCeEEEE-ECC-CCCEEEEEECCCeEEE
Q 010754 224 SPAGSLLASGSGDSTARIWTIADGTSNGGAQNG-PLNVLVLKHVKGRTNEKSKDVTTLD-WNG-EGTLLATGSYDGQARI 300 (502)
Q Consensus 224 ~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~-~s~-~g~~l~s~~~dg~i~i 300 (502)
+.||+.++-. .-|.|.+||-.+..... +.-+ ++. +. ........+..-+. |++ +|.+++..+. |...|
T Consensus 275 nsDGkrIvFq-~~GdIylydP~td~lek-ldI~lpl~----rk--~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi 345 (668)
T COG4946 275 NSDGKRIVFQ-NAGDIYLYDPETDSLEK-LDIGLPLD----RK--KKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFI 345 (668)
T ss_pred CCCCcEEEEe-cCCcEEEeCCCcCccee-eecCCccc----cc--cccccccCHHHhhhhhccCCCcEEEEEec-CcEEE
Confidence 4467665543 34789999987754321 1100 000 00 00000011111222 343 6889988886 77888
Q ss_pred EECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC-eEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCC
Q 010754 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDN 378 (502)
Q Consensus 301 wd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~ 378 (502)
.+........+ ++.+.|.-..+.-+++-++.|..|| .+-++|.++++. ..+...-+.|.++..++++. ++++....
T Consensus 346 ~~~~~~~~iqv-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 346 MRPWDGYSIQV-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRF 423 (668)
T ss_pred ECCCCCeeEEc-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence 87655444333 5667788888888888899999999 899999988764 44566777899999998877 55666667
Q ss_pred eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 379 ~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.|.++|+.++.+...=+...+-|+.+.|||+++++|-+--+| .|+++|+..++....-. ..+.=.+-+|.|||.
T Consensus 424 el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~r 501 (668)
T COG4946 424 ELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGR 501 (668)
T ss_pred EEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCc
Confidence 899999999987655555667899999999999999876665 69999999888764433 333345678999988
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.8e-07 Score=88.72 Aligned_cols=237 Identities=16% Similarity=0.173 Sum_probs=169.2
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC-----------
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG----------- 286 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g----------- 286 (502)
-.++.|+|.| ++|.|+. ..|.+.|..+-+.+..+ ..|...|+.+.|.|-.
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsi-----------------e~h~s~V~~VrWap~~~p~~llS~~~~ 78 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSI-----------------ELHQSAVTSVRWAPAPSPRDLLSPSSS 78 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhcc-----------------ccCccceeEEEeccCCCchhccCcccc
Confidence 5678999877 6788776 57888887765544322 2345679999997631
Q ss_pred -CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec---CC-CEEEEEecCCeEEEEEcCCCceEEEEeeccCCe
Q 010754 287 -TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK---KG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (502)
Q Consensus 287 -~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~---~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 360 (502)
-.||++...|.|.+||.. +..+..+..|..++..++|-+ +. ..|++.....++.+|+..+|+....+.......
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 257778888999999976 456667888899999999976 33 467777778899999999999888777666666
Q ss_pred EEEEecC--CCEEEEEeCCCeEEEEEcCCC----cceEEE---ecCCC-------------------------cEEEEEE
Q 010754 361 LDVDWRN--NVSFATSSTDNMIYVCKIGEN----RPIKTF---AGHQG-------------------------EVNCVKW 406 (502)
Q Consensus 361 ~~v~~~~--~~~~~~~~~d~~i~i~d~~~~----~~~~~~---~~h~~-------------------------~i~~l~~ 406 (502)
.++.+.| ...|..-+..|.+.+.+.-.. .+.+.+ ..|.. ....++|
T Consensus 159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf 238 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF 238 (1062)
T ss_pred eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence 6677654 344777777788877765321 122222 11211 0123567
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 407 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 407 sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
+|.-+-++-......+.|+|+.-..++..+.-..+.+.=+.|-|+++ .+.|+..-.+|.+.+|.-..
T Consensus 239 ~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~-----rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 239 SPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR-----RDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC-----cceEEEEecCCeEEEEEeec
Confidence 88766555555667799999998888888877777788899999987 34577788899999997554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-06 Score=83.72 Aligned_cols=237 Identities=17% Similarity=0.273 Sum_probs=154.5
Q ss_pred CceEEEEEcCCCCeEEEEeC-----------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSG-----------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~-----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
..|.-+.|||..++|+|-+. -..++|||+.+|.....+.. +. .....-.-..||.
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~----------~~----~~~~~WP~frWS~ 315 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPV----------IK----SPYLKWPIFRWSH 315 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceec----------cC----CCccccceEEecc
Confidence 35889999999999998763 15689999999875443221 00 0011133568999
Q ss_pred CCCEEEEEECCCeEEEEECCCceEEEe-cCccCCeEEEEEecCCCEEEEEec-----CCeEEEEEcCCCceEEEEeeccC
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDVKTEEWKQQFEFHSG 358 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~ 358 (502)
|++++|.-.. ..|.||+...-..... .-.-..|....|+|.++.|+--.. -..+.+..+.+++.+++-..+.-
T Consensus 316 DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 316 DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 9999987766 6789998654222211 123456888999999888874322 24688888888888877766665
Q ss_pred CeEEEEecCCCEEEEEeCC-----------CeEEEEEcCCCc-ceEEEecCCCcEEEEEEcCCCCEEEEEeC---CCcEE
Q 010754 359 PTLDVDWRNNVSFATSSTD-----------NMIYVCKIGENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAK 423 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~~~~d-----------~~i~i~d~~~~~-~~~~~~~h~~~i~~l~~sp~g~~las~s~---dg~i~ 423 (502)
.-..+.|..++.+++.-.| ..+-|+.++... ++.... -...|...+|-|.|..+++-+. ..++.
T Consensus 395 sDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvs 473 (698)
T KOG2314|consen 395 SDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVS 473 (698)
T ss_pred eccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcccccccee
Confidence 5566778665554443211 234566665543 444443 4567889999999998876654 35789
Q ss_pred EEECCC----CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe---ecCceEEEEee
Q 010754 424 IWNMKQ----DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR---LIPYFLYWICS 477 (502)
Q Consensus 424 iwd~~~----~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las---~~~~~~iw~~~ 477 (502)
+|.+.+ .+++..+. ....+.+.|+|.|+ .+++|. ..+++.+++.+
T Consensus 474 fY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~-------fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 474 FYAVETNIKKPSLVKELD--KKFANTVFWSPKGR-------FVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred EEEeecCCCchhhhhhhc--ccccceEEEcCCCc-------EEEEEEecccccceEEEecc
Confidence 998873 22334443 35688999999998 444333 34566666543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.7e-08 Score=63.08 Aligned_cols=38 Identities=39% Similarity=0.910 Sum_probs=36.3
Q ss_pred cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 389 ~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
+++.++.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-07 Score=84.60 Aligned_cols=205 Identities=17% Similarity=0.297 Sum_probs=139.7
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECCCce------EEEecCcc------------CCeEEEEEecCC--CEEEEE
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL------KCTLSKHK------------GPIFSLKWNKKG--DYLLTG 333 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~------------~~v~~l~~~~~~--~~l~s~ 333 (502)
...|+++.|...|.+|++|...|.|.+|..+... ...+.+|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3469999999999999999999999999754321 12233442 357889997654 467778
Q ss_pred ecCCeEEEEEcCCCceE------------------------------------------EEE-eeccCCeEEEEecCCCE
Q 010754 334 SCDKTAIVWDVKTEEWK------------------------------------------QQF-EFHSGPTLDVDWRNNVS 370 (502)
Q Consensus 334 ~~d~~i~~wd~~~~~~~------------------------------------------~~~-~~~~~~v~~v~~~~~~~ 370 (502)
+.|++|++|.+...... +.+ ..|.-.+.++.+..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999987543100 000 12333467788877777
Q ss_pred EEEEeCCCeEEEEEcCCCcc---eEEEecCC-----CcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee------EEE
Q 010754 371 FATSSTDNMIYVCKIGENRP---IKTFAGHQ-----GEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKY------VHD 435 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~---~~~~~~h~-----~~i~~l~~sp~g-~~las~s~dg~i~iwd~~~~~~------~~~ 435 (502)
.+.++.|=+|.+|++.-... +--++.|. .-|++..|+|.. ..+.-.+..|.|++-|++...+ +..
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 78888899999999865432 22233343 358889999964 4566677789999999984321 111
Q ss_pred ----------eccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEEEeeecc
Q 010754 436 ----------LREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYFGTT 486 (502)
Q Consensus 436 ----------~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~~~~g~~ 486 (502)
+.+-.+.|..+.|+|+|+ ++++-.--++++|+..+.-.+.-++
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngr--------yIlsRdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGR--------YILSRDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCc--------EEEEeccceEEEEecccccCCceee
Confidence 112235689999999997 3444444889999988776665444
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=62.97 Aligned_cols=37 Identities=49% Similarity=0.917 Sum_probs=35.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEe
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 243 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~ 243 (502)
.++++++|.+.|++|+|+|++.+|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4688999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-05 Score=70.22 Aligned_cols=218 Identities=13% Similarity=0.120 Sum_probs=145.3
Q ss_pred eEEEEEcC-CCCeEEEEeCCCc-EEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-
Q 010754 218 VCACAWSP-AGSLLASGSGDST-ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY- 294 (502)
Q Consensus 218 V~~~~~~p-~~~~l~sgs~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~- 294 (502)
...++.+| .+..++.+-.-|+ +.+||..+++....+.. ....++.+ .-.||+||++|++.=.
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------~~gRHFyG------Hg~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------PPGRHFYG------HGVFSPDGRLLYTTEND 71 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---------CCCCEEec------CEEEcCCCCEEEEeccc
Confidence 44678888 4667777766654 67889888764322111 11122222 3469999999998744
Q ss_pred ----CCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEec------------------CCeEEEEEcCCCceE
Q 010754 295 ----DGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC------------------DKTAIVWDVKTEEWK 350 (502)
Q Consensus 295 ----dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~------------------d~~i~~wd~~~~~~~ 350 (502)
.|.|-|||... ..+..+..|.-.-..+.+.|+|+.|+++.- +.++...|..+|+.+
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 38999999883 445567777666788899999987777532 235667788888887
Q ss_pred EEEee----ccCCeEEEEecCCCEEEEEeCCC------eEEEEEcCCCcceEEEe-------cCCCcEEEEEEcCCCCEE
Q 010754 351 QQFEF----HSGPTLDVDWRNNVSFATSSTDN------MIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLL 413 (502)
Q Consensus 351 ~~~~~----~~~~v~~v~~~~~~~~~~~~~d~------~i~i~d~~~~~~~~~~~-------~h~~~i~~l~~sp~g~~l 413 (502)
.+... |.-.+.-+++.+++.++.+.... .-.+.-.+.+..+..+. .-.+.|-+|++++++.++
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLI 231 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence 77443 66788899998888777664321 11222223333333332 234679999999999888
Q ss_pred EEEe-CCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCC
Q 010754 414 ASCS-DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (502)
Q Consensus 414 as~s-~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g 452 (502)
+..| .-|.+.+||..+++++....-. .+..++-.+++
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~ 269 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG 269 (305)
T ss_pred EEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc
Confidence 6655 4678999999999988766533 36667766665
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.8e-06 Score=81.88 Aligned_cols=221 Identities=9% Similarity=0.018 Sum_probs=132.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-C
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-G 305 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~ 305 (502)
+..++.++.++.+..||..+++............ . ......++ . .+..++.+..+|.+..+|.. +
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~-~-------~~~~~sp~----~--~~~~v~~~~~~g~v~ald~~tG 210 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL-T-------LRGSASPV----I--ADGGVLVGFAGGKLVALDLQTG 210 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCce-e-------ecCCCCCE----E--ECCEEEEECCCCEEEEEEccCC
Confidence 4566777788999999988876432211100000 0 00000111 1 12467778888999999975 4
Q ss_pred ceEEEecCc-c---CC---eEEEEEec--CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeC
Q 010754 306 DLKCTLSKH-K---GP---IFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST 376 (502)
Q Consensus 306 ~~~~~~~~~-~---~~---v~~l~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 376 (502)
......... . .. +..+.-+| .+..+++++.+|.++.||..+++.+....... ..... ..++.+++++.
T Consensus 211 ~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~-~~~~~vyv~~~ 287 (377)
T TIGR03300 211 QPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPA-VDDNRLYVTDA 287 (377)
T ss_pred CEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCce-EeCCEEEEECC
Confidence 443332210 0 00 00000011 24678888899999999999998776654211 11112 23566778889
Q ss_pred CCeEEEEEcCCCcceEEEecCCC-cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCC
Q 010754 377 DNMIYVCKIGENRPIKTFAGHQG-EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 455 (502)
Q Consensus 377 d~~i~i~d~~~~~~~~~~~~h~~-~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~ 455 (502)
+|.++.+|..+++.+........ ....... .+..|++++.+|.|+++|..+++.+..+..+..++..--...+
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~---- 361 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG---- 361 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC----
Confidence 99999999999987765532211 2222222 3668899999999999999999999888766544322211222
Q ss_pred CCCCccEEEEeecCceEEE
Q 010754 456 NNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 456 ~~~~~~l~las~~~~~~iw 474 (502)
..+++++.++.+..+
T Consensus 362 ----~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 ----DGLLVQTRDGDLYAF 376 (377)
T ss_pred ----CEEEEEeCCceEEEe
Confidence 257889888877654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.1e-06 Score=81.72 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=77.8
Q ss_pred CCceEEeccCCCceEEEEEcCCC------------CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCcccc
Q 010754 205 NSDVTILEGHTSEVCACAWSPAG------------SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~------------~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (502)
-+.++.+.-|...|+.+.|.|-. -+||++...|.|.+||+..+..+. ....
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-----------------~l~~ 107 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-----------------WLSH 107 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-----------------hhcC
Confidence 34567788899999999998731 157777788999999988765332 2234
Q ss_pred CCCCeEEEEECC---CC-CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEE
Q 010754 273 KSKDVTTLDWNG---EG-TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVW 342 (502)
Q Consensus 273 ~~~~v~~l~~s~---~g-~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~w 342 (502)
+...+..++|-+ +. ..|++-.....|.+|+.. |..............|+.+.| +.+.+..-+..|.+.+-
T Consensus 108 ~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 108 SNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred CCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 456778888865 33 356666667899999755 444444444444555566666 33444444444444444
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.8e-06 Score=81.95 Aligned_cols=216 Identities=17% Similarity=0.232 Sum_probs=145.6
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
.-++..++|||.|.+|++... ..|.+|.-....... .+. ...|..+.|+|.+++|.+-+.
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~----------~~~---------~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLV----------RFR---------HPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred CcchhheeecCcchheehhhc-cceEEccccchhhee----------eee---------cCCceecccCcccceeeeecc
Confidence 356788999999999998876 458999866543111 111 246999999999999998765
Q ss_pred CC---------------eEEEEECC-CceEEEecCccCC--eE-EEEEecCCCEEEEEecCCeEEEEEcCCCceEE-EEe
Q 010754 295 DG---------------QARIWSTN-GDLKCTLSKHKGP--IF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFE 354 (502)
Q Consensus 295 dg---------------~i~iwd~~-~~~~~~~~~~~~~--v~-~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~ 354 (502)
-+ .+.+||.. +..+..+.....+ .+ -++|+-+.++++-. ....++++++ +..... -+.
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~ 169 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFK 169 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchh
Confidence 43 48999976 4556666665555 55 78899888877654 4557999997 433211 111
Q ss_pred e-ccCCeEEEEecCCC---EEEE-----EeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe--------
Q 010754 355 F-HSGPTLDVDWRNNV---SFAT-----SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-------- 417 (502)
Q Consensus 355 ~-~~~~v~~v~~~~~~---~~~~-----~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s-------- 417 (502)
. ....+.+..|+|.+ .|+. .+..+.+++|.+..+..+.+-.-....=..+.|.+.|++|+.--
T Consensus 170 ~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 170 NLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred hccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccc
Confidence 1 23457778887762 1332 35678899999998776654433333345788999998865421
Q ss_pred ---CCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 418 ---DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 418 ---~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
....++|+++....+- ....-.++|...+|.|.++
T Consensus 250 syfgesnLyl~~~~e~~i~-V~~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 250 SYFGESNLYLLRITERSIP-VEKDLKDPVHDFTWEPLSS 287 (561)
T ss_pred ceeccceEEEEeecccccc-eeccccccceeeeecccCC
Confidence 1246888888744332 2225678999999999998
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-06 Score=86.92 Aligned_cols=107 Identities=25% Similarity=0.428 Sum_probs=82.8
Q ss_pred EEEEcCCCCeEEEEeC----CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 220 ACAWSPAGSLLASGSG----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
-..|+|...+||.++- .|.|.||- .+|..... . .-.-.+++++|+|..-.|+.|-.-
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-------------V-----t~P~hatSLCWHpe~~vLa~gwe~ 80 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-------------V-----TYPVHATSLCWHPEEFVLAQGWEM 80 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-------------c-----ccceehhhhccChHHHHHhhcccc
Confidence 4589999999988863 47788874 33332110 0 001237789999998899999999
Q ss_pred CeEEEEECCCceEE-EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC
Q 010754 296 GQARIWSTNGDLKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345 (502)
Q Consensus 296 g~i~iwd~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~ 345 (502)
|.+.+|..+..... ....|+.+|..+.|+++|+.++++..-|.|.+|...
T Consensus 81 g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999998765544 445799999999999999999999999999999764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-06 Score=87.50 Aligned_cols=239 Identities=13% Similarity=0.217 Sum_probs=150.3
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
+.|.++.|.-++.-++.+..+|.|.+-|.++..... .+ .-...|.+++||||+..++..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei---------------vg---~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI---------------VG---NVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee---------------ee---eccCceEEEeecCCCcEEEEEeCC
Confidence 678999999999888889999999999877654210 01 114569999999999999999988
Q ss_pred CeEEEEECC------C------------------ceEEEecC---------------------ccCCeEEEEEecCCCEE
Q 010754 296 GQARIWSTN------G------------------DLKCTLSK---------------------HKGPIFSLKWNKKGDYL 330 (502)
Q Consensus 296 g~i~iwd~~------~------------------~~~~~~~~---------------------~~~~v~~l~~~~~~~~l 330 (502)
+++.+.+-. . +....+.+ ..+.=+++.|--+|.++
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~f 210 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYF 210 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEE
Confidence 888776421 0 00011111 11112458999999999
Q ss_pred EEEe----cC-CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEE----eCCCeEEEEEcCCCc---ceEEEecCC
Q 010754 331 LTGS----CD-KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS----STDNMIYVCKIGENR---PIKTFAGHQ 398 (502)
Q Consensus 331 ~s~~----~d-~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~----~~d~~i~i~d~~~~~---~~~~~~~h~ 398 (502)
++.. .+ +.|++||-. |..-..-....+.-.+++|.|.+.++++ +.|+.|.+|.-+.-. ..-.+....
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 9832 23 799999966 5433332333344567899886654433 356678888754321 122233333
Q ss_pred CcEEEEEEcCCCCEEEE---EeCCCcEEEEECCCCeeE--EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCc--e
Q 010754 399 GEVNCVKWDPTGSLLAS---CSDDVTAKIWNMKQDKYV--HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPY--F 471 (502)
Q Consensus 399 ~~i~~l~~sp~g~~las---~s~dg~i~iwd~~~~~~~--~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~--~ 471 (502)
..|..++|+.++..||. +.....|++|-+.+.... ..+...... -+.|+|.-. ..+.+-.-++. +
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~--~~~W~p~~~------~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA--LLMWDPVTE------KTLHVLRESGQRLV 361 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccc--cccccCCCc------eeEEEEecCCcEEE
Confidence 45899999999999987 444555999998775432 222222222 288999543 33444433444 5
Q ss_pred EEEEeeeEEE
Q 010754 472 LYWICSIYFK 481 (502)
Q Consensus 472 ~iw~~~~~~~ 481 (502)
+-|.+...++
T Consensus 362 ~~~~~~t~~s 371 (1265)
T KOG1920|consen 362 RDFAWTTDRS 371 (1265)
T ss_pred EEEEEeeecc
Confidence 5555666663
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-06 Score=73.85 Aligned_cols=183 Identities=9% Similarity=0.049 Sum_probs=127.8
Q ss_pred eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc--
Q 010754 229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-- 306 (502)
Q Consensus 229 ~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~-- 306 (502)
.+..++.|.++++.+++.+...... +.. .-.+.+++++++++++++.+....|..|.++..
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~---------------h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se 192 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAV---------------HNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE 192 (344)
T ss_pred ceeeccCCcceeEEEEecCccccee---------------ecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccc
Confidence 4677788999999988765421100 000 123789999999999999999999999987632
Q ss_pred -eEE-EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE-----EeeccCCeEEEEecCCC---EEEEEeC
Q 010754 307 -LKC-TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-----FEFHSGPTLDVDWRNNV---SFATSST 376 (502)
Q Consensus 307 -~~~-~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~v~~v~~~~~~---~~~~~~~ 376 (502)
... ........-.+..|+.....++++..||++.|||++....... -..|.+.+..+.|++.+ .++..-.
T Consensus 193 y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh 272 (344)
T KOG4532|consen 193 YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH 272 (344)
T ss_pred eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC
Confidence 222 2333444557889999999999999999999999987654332 23478889999998643 3555566
Q ss_pred CCeEEEEEcCCCcceEEEe-------cCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 377 DNMIYVCKIGENRPIKTFA-------GHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 377 d~~i~i~d~~~~~~~~~~~-------~h~-~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
-+.+.+.|+++.+..+.+. .|. ..|..-.|+.++.-+.+.+++. +.=|++.+
T Consensus 273 fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 273 FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred cceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeeccc
Confidence 7889999999987554433 232 2377778887777666666553 45566554
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=81.86 Aligned_cols=145 Identities=17% Similarity=0.246 Sum_probs=96.9
Q ss_pred CCCEEEEEECCCeEEEEECCCce--EEEecCccCCeEEEEEecCCCEEEEEec-----CCeEEEEEcCCCceEEEEeecc
Q 010754 285 EGTLLATGSYDGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSC-----DKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
-++-+++++.||.+.+++.+... ..........-.+.++...++.+.++.. -+..+.|+++..+.+..-....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 45678999999999999976411 1111111112233444445555555432 2345666665433322222223
Q ss_pred CCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCc-ceEEEecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 010754 358 GPTLDVDWRN--NVSFATSSTDNMIYVCKIGENR-PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 358 ~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~h~~~i~~l~~sp-~g~~las~s~dg~i~iwd~~~ 429 (502)
..|.+++-+| ...+++|+.||.+-+||.++.. ++..+..|+.+|+.+-|+| ++..|+++++||.+.-||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3477777655 4568889999999999999874 5667789999999999999 467899999999999999764
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-06 Score=83.50 Aligned_cols=138 Identities=19% Similarity=0.340 Sum_probs=100.8
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-----CCEEEEEECCCeEEE
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-----GTLLATGSYDGQARI 300 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-----g~~l~s~~~dg~i~i 300 (502)
+|.+++|||.||+|.|-.+-+.+.... . ....++.+++++|+ .+.+++|+.-| +.+
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~--------~----------df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL 142 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQ--------Y----------DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL 142 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCcccee--------E----------ecCCcceeEEeccchhhhhhhheeecCcce-EEE
Confidence 489999999999999998877653211 0 11346899999997 56899999888 777
Q ss_pred EECC---CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC------eEEEEecCCCEE
Q 010754 301 WSTN---GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP------TLDVDWRNNVSF 371 (502)
Q Consensus 301 wd~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~------v~~v~~~~~~~~ 371 (502)
+..+ ......+....++|.+++|. |++++=++ |--|++||+.+++.+..+...... ...+.|.++..+
T Consensus 143 ~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L 219 (846)
T KOG2066|consen 143 SERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL 219 (846)
T ss_pred ehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE
Confidence 7643 22233567778999999996 56666665 445999999998887776654332 345788888888
Q ss_pred EEEeCCCeEEEEEcC
Q 010754 372 ATSSTDNMIYVCKIG 386 (502)
Q Consensus 372 ~~~~~d~~i~i~d~~ 386 (502)
+.|- ..+|.|+.++
T Consensus 220 VIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 220 VIGW-GDSVKICSIK 233 (846)
T ss_pred EEec-CCeEEEEEEe
Confidence 7764 4567888877
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-06 Score=88.05 Aligned_cols=179 Identities=17% Similarity=0.243 Sum_probs=128.9
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 305 (502)
++..++.|+.-..+..+|+.+.+..... ......|+-|+. +++++.+|...|+|.+-|.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-----------------~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s 206 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT-----------------NVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS 206 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee-----------------eccCCceEEEEe--cCcEEEeecccceEEeecCCc
Confidence 3455667766667777887765432110 111223666654 578999999999999999874
Q ss_pred -ceEEEecCccCCeEEEEEecCCCEEEEEec---------CCeEEEEEcCCCceEEEEeeccCCeEEEEecC--CCEEEE
Q 010754 306 -DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---------DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--NVSFAT 373 (502)
Q Consensus 306 -~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~--~~~~~~ 373 (502)
+.+.++..|.+.|..+.. .|+.|++|+. |..|+|||++..+.+.-+..+.++ .-+.|.| ...+++
T Consensus 207 ~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V 283 (1118)
T KOG1275|consen 207 FETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV 283 (1118)
T ss_pred Cceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE
Confidence 778899999999987655 5899999875 456899999988776655555544 2234444 456888
Q ss_pred EeCCCeEEEEEc---CCCc-ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 374 SSTDNMIYVCKI---GENR-PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 374 ~~~d~~i~i~d~---~~~~-~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
++..|...+.|. .+.. .+..+......+.++.++++|+.+|.|..+|.|.+|-
T Consensus 284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 284 TSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 899999999993 3321 1233333345699999999999999999999999997
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.4e-08 Score=95.89 Aligned_cols=172 Identities=18% Similarity=0.390 Sum_probs=127.2
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCC--eEEEEEcCC-C
Q 010754 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKT-E 347 (502)
Q Consensus 272 ~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~--~i~~wd~~~-~ 347 (502)
.+....+|++|+.+.++|++|+..|.|++|++. |.......+|.++|+.+.-+.+|..+++.+.-. -..+|++.+ +
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 445779999999999999999999999999976 555667889999999999999998888765543 477999853 4
Q ss_pred ceEEEEeeccCCeEEEEecCCCEE-EEEeCCCeEEEEEcCCCcceEEEe-c---CCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFA-G---HQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~-~---h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
...++|. .-.++.|+....+ +.|+......+||+.++.++.++- + ....-++..|+|+..+++ .||.
T Consensus 1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndGv- 1250 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDGV- 1250 (1516)
T ss_pred Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCce-
Confidence 4555554 2346777665442 344455678899999998877742 2 122346788999998876 4664
Q ss_pred EEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+||++..+.++.|...+..+ .-.|+|.|.
T Consensus 1251 -LWDvR~~~aIh~FD~ft~~~-~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1251 -LWDVRIPEAIHRFDQFTDYG-GGGFHPSGN 1279 (1516)
T ss_pred -eeeeccHHHHhhhhhheecc-cccccCCCc
Confidence 79999988888776544322 235999988
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00014 Score=64.83 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=119.0
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCC---ceEEE---ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 280 LDWNGEGTLLATGSYDGQARIWSTNG---DLKCT---LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 280 l~~s~~g~~l~s~~~dg~i~iwd~~~---~~~~~---~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
++.+.+|++||+.- |..|.|-..+. ..+.. .......=..++|+||+..|+.+...|+|++||+.... +..+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 45678888877654 67777776442 12111 12222335779999999999999999999999986533 3333
Q ss_pred eec-------cCCeEEEEecCCC-------EEEEEeCCCeEEEEEcCCC-----cceEEEe--c-CCCcEEEEEEcCCCC
Q 010754 354 EFH-------SGPTLDVDWRNNV-------SFATSSTDNMIYVCKIGEN-----RPIKTFA--G-HQGEVNCVKWDPTGS 411 (502)
Q Consensus 354 ~~~-------~~~v~~v~~~~~~-------~~~~~~~d~~i~i~d~~~~-----~~~~~~~--~-h~~~i~~l~~sp~g~ 411 (502)
... ...|..+.|.... .+++-.-+|.++-|-+..+ +...+|. . +...|+++.|+|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 221 2356666664322 4677777888777765322 2223332 2 356899999999988
Q ss_pred EEEEEeC----CC-------cEEEEECCCCee---------------------EEEe--------ccCCCcEEEEEEccC
Q 010754 412 LLASCSD----DV-------TAKIWNMKQDKY---------------------VHDL--------REHSKEIYTIRWSPT 451 (502)
Q Consensus 412 ~las~s~----dg-------~i~iwd~~~~~~---------------------~~~~--------~~h~~~i~~v~~sp~ 451 (502)
+|+.|+. ++ -+.-|.+-++.+ .+.+ ......|..|..|||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 8877753 11 266776533211 0000 012446999999999
Q ss_pred CCCCCCCCccEEEEeecCceEEEEe
Q 010754 452 GSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 452 g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+ .|+....+|.+.+|..
T Consensus 241 g~-------~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 241 GS-------LLACIHFSGSLSLWEI 258 (282)
T ss_pred CC-------EEEEEEcCCeEEEEec
Confidence 99 6677777888999853
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.8e-05 Score=68.47 Aligned_cols=187 Identities=17% Similarity=0.122 Sum_probs=118.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEEC-C
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-N 304 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~-~ 304 (502)
++..+++++.++.+..||..+++..... .+.... .. . . ...+..+++++.++.|+.+|. .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~-----------~~~~~~---~~-~--~--~~~~~~v~v~~~~~~l~~~d~~t 95 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRF-----------DLPGPI---SG-A--P--VVDGGRVYVGTSDGSLYALDAKT 95 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEE-----------ECSSCG---GS-G--E--EEETTEEEEEETTSEEEEEETTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe-----------eccccc---cc-e--e--eecccccccccceeeeEecccCC
Confidence 5666777789999999999888642211 111100 00 1 1 123556777778889999994 4
Q ss_pred CceEEEe-cCcc---CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCe-----------EEEEecCCC
Q 010754 305 GDLKCTL-SKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----------LDVDWRNNV 369 (502)
Q Consensus 305 ~~~~~~~-~~~~---~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----------~~v~~~~~~ 369 (502)
+...... .... .....+.....+..++++..++.|..+|+++|+.+..+....... ..+.+. ++
T Consensus 96 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 174 (238)
T PF13360_consen 96 GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG 174 (238)
T ss_dssp SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT
T ss_pred cceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC
Confidence 6666553 2221 111222333347889999889999999999999988887644221 233333 34
Q ss_pred EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
.++.++.++.+..+|+.+++.+.... ...+..+ ..+.+..|+.++.++.|.+||+++++.+..
T Consensus 175 ~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 175 RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 77777777754444999998664333 2223331 346778888888999999999999987643
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.51 E-value=9e-05 Score=70.37 Aligned_cols=198 Identities=12% Similarity=0.155 Sum_probs=115.3
Q ss_pred EEEEEcCCCCeEEEEe-C-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-CC
Q 010754 219 CACAWSPAGSLLASGS-G-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-YD 295 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs-~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~d 295 (502)
..++++|||++|+... . +..|.+.|+.+++.+..+....... .. ....-..+..+.||.++.... .+
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy---------~t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IF---------PTANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EE---------EecCCccEEEeecCceEEEEecCC
Confidence 3679999999888776 3 6899999999887543221100000 00 001111122223333322221 12
Q ss_pred CeEEEEECCCceEEEecC-----ccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCc-----eEEEEee-------cc
Q 010754 296 GQARIWSTNGDLKCTLSK-----HKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEE-----WKQQFEF-------HS 357 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~-----~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~-------~~ 357 (502)
|....=+ ...+.. ...+ .|.+ +|+++++... |+|.+.|+.... ....+.. ..
T Consensus 178 g~~~~~~-----~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 178 GNPKIKP-----TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred CceEEee-----eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCC
Confidence 2211000 001111 0122 3455 7877777666 999999964432 2222211 12
Q ss_pred CCeEEEEecCC-CEEEE-E---------eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEEe-CCCcEEE
Q 010754 358 GPTLDVDWRNN-VSFAT-S---------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCS-DDVTAKI 424 (502)
Q Consensus 358 ~~v~~v~~~~~-~~~~~-~---------~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~s-~dg~i~i 424 (502)
+...-++++++ +.+++ . ...+.|.++|..+.+.+..+.. ...+..|+++||++ +|++.+ .++.|.+
T Consensus 248 ~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 248 GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 22333777654 44444 2 1225899999999999988873 45799999999999 777666 5788999
Q ss_pred EECCCCeeEEEec
Q 010754 425 WNMKQDKYVHDLR 437 (502)
Q Consensus 425 wd~~~~~~~~~~~ 437 (502)
.|..+++.+.++.
T Consensus 327 iD~~t~k~i~~i~ 339 (352)
T TIGR02658 327 FDAETGKELSSVN 339 (352)
T ss_pred EECcCCeEEeeec
Confidence 9999999999883
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.6e-07 Score=83.46 Aligned_cols=206 Identities=13% Similarity=0.136 Sum_probs=140.5
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
-|.+.|+.|.-. ..+++.+++.||.++.|.-.... ...+..+...|...|.+++.+-+|.++.++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is--------------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv 71 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS--------------GVEFVKHFRAHLGVILSLAVSYDGWLFRSV 71 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCcc--------------ceeehhhhHHHHHHHHhhhccccceeEeec
Confidence 377777776544 56799999999999999744311 112334445566778899999999999998
Q ss_pred EC-CCeEEEEECCCceEE---EecCccCCeEEEEEe-cCC---CEEEE-EecCCeEEEEEcCCCce--EEEEeeccCCeE
Q 010754 293 SY-DGQARIWSTNGDLKC---TLSKHKGPIFSLKWN-KKG---DYLLT-GSCDKTAIVWDVKTEEW--KQQFEFHSGPTL 361 (502)
Q Consensus 293 ~~-dg~i~iwd~~~~~~~---~~~~~~~~v~~l~~~-~~~---~~l~s-~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~ 361 (502)
+. |..++++|+..--.. .+.-..+. +.|. ..| ..+++ .-.++.+.++|-....+ ...-..|..+|.
T Consensus 72 ~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~ 148 (558)
T KOG0882|consen 72 EDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVK 148 (558)
T ss_pred cCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceE
Confidence 77 999999997643222 12222222 2232 223 13333 33478999999765442 233345888999
Q ss_pred EEEecC-CCEEEEEeCCCeEEEEEcCC------Ccce---------EEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010754 362 DVDWRN-NVSFATSSTDNMIYVCKIGE------NRPI---------KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 362 ~v~~~~-~~~~~~~~~d~~i~i~d~~~------~~~~---------~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iw 425 (502)
.+.+.+ ...+++....|.|.-|.... .... ..+.......+++.|+|+|..+++-+.|..|+++
T Consensus 149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 999866 45577777789999998763 1111 1122234568899999999999999999999999
Q ss_pred ECCCCeeEEEe
Q 010754 426 NMKQDKYVHDL 436 (502)
Q Consensus 426 d~~~~~~~~~~ 436 (502)
+.++++.++.+
T Consensus 229 ~~KtGklvqei 239 (558)
T KOG0882|consen 229 VFKTGKLVQEI 239 (558)
T ss_pred Eeccchhhhhh
Confidence 99999876555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-05 Score=79.83 Aligned_cols=179 Identities=17% Similarity=0.269 Sum_probs=124.5
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEc----CCC--
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV----KTE-- 347 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~----~~~-- 347 (502)
...|.++.|..+++.++.+..+|.|.+-|...........-...|.+++|+|++..++..+..+++.+-+- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 35799999999999999999999999999887777777677889999999999999999888888877532 010
Q ss_pred -----------------ceEEEEeeccC---------------------CeEEEEecCCCE-EEEE----eCC-CeEEEE
Q 010754 348 -----------------EWKQQFEFHSG---------------------PTLDVDWRNNVS-FATS----STD-NMIYVC 383 (502)
Q Consensus 348 -----------------~~~~~~~~~~~---------------------~v~~v~~~~~~~-~~~~----~~d-~~i~i~ 383 (502)
+....|.+..+ .-+.|+|..++. |++. ..+ +.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 11112322111 124599988875 4442 344 899999
Q ss_pred EcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe---CCCcEEEEECC---CCeeEEEeccCCCcEEEEEEccCCC
Q 010754 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMK---QDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 384 d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s---~dg~i~iwd~~---~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
|.. +..-.+-....+.-.+++|-|.|.++|+-. .|+.|.++.-+ .+.....+.....+|..++|+.++.
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence 976 432222222233445799999999998864 35679999732 2333333334455699999999998
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.2e-06 Score=79.09 Aligned_cols=176 Identities=18% Similarity=0.303 Sum_probs=125.8
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-----------CCeEEEEEc
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-----------DKTAIVWDV 344 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-----------d~~i~~wd~ 344 (502)
.-+-+.|||.|.||++--.- -|.+|--..-....-..|. .|.-+.|||+.+||+|-+. ...++|||+
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35788999999999987664 4888964332222223454 4788999999999998653 257999999
Q ss_pred CCCceEEEEeeccCC--e-EEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC--
Q 010754 345 KTEEWKQQFEFHSGP--T-LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-- 419 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~--v-~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-- 419 (502)
++|...+.|....++ + .-+.|+.++.+++.-....|.||+..+-.++..-.-.-..|....|+|.+++||-=+..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 999999988764332 2 34578888888888888999999987754433222234568888999999998865432
Q ss_pred ---CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 420 ---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 420 ---g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
..+.+-.+.+++.+++-..|.-.=..+.|-.+|.
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 3577788888877776665554445677888776
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.4e-05 Score=73.11 Aligned_cols=215 Identities=13% Similarity=0.081 Sum_probs=129.5
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEE-EEECCCCCEEEEEECCCeEEEEECC
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT-LDWNGEGTLLATGSYDGQARIWSTN 304 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~~g~~l~s~~~dg~i~iwd~~ 304 (502)
++..++.++.++.+..+|..+++........ ..+.+ ... .+..++.++.+|.|..||.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~------------------~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS------------------SEVLSPPLV--ANGLVVVRTNDGRLTALDAA 163 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC------------------ceeecCCEE--ECCEEEEECCCCeEEEEEcC
Confidence 4667788888999999999887643211110 11111 011 24567778889999999975
Q ss_pred -CceEEEecCccCCe-----EEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC----C---eEEEE---ecCC
Q 010754 305 -GDLKCTLSKHKGPI-----FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----P---TLDVD---WRNN 368 (502)
Q Consensus 305 -~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----~---v~~v~---~~~~ 368 (502)
++.+.........+ .+.... +..++.+..++.+..+|..+|+.+........ . ...+. ...+
T Consensus 164 tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~ 241 (377)
T TIGR03300 164 TGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG 241 (377)
T ss_pred CCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC
Confidence 55544443322111 111111 24677888899999999999987655432110 0 00010 1125
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCc-EEEEE
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE-IYTIR 447 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~v~ 447 (502)
+.+++++.+|.++.+|..+++.+...... ....... .+..++.++.||.|..+|..+++.+......... ..+..
T Consensus 242 ~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 242 GQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred CEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 67788888999999999999877665421 1222222 4667888889999999999999887655321111 11111
Q ss_pred EccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 448 WSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 448 ~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
. .+ ..+++++.++.+.++.
T Consensus 318 i--~g-------~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 318 V--VG-------GYLVVGDFEGYLHWLS 336 (377)
T ss_pred E--EC-------CEEEEEeCCCEEEEEE
Confidence 1 12 3667777777777765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-05 Score=76.73 Aligned_cols=190 Identities=12% Similarity=0.184 Sum_probs=127.9
Q ss_pred EEeccCCCceEEEEEcCCC-CeEEEEeCCCc-----EEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 209 TILEGHTSEVCACAWSPAG-SLLASGSGDST-----ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~-~~l~sgs~dg~-----v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
+-++.|...|...-|.-++ .+|++.+.|+. ++||+++....... |......+...........++.+++.
T Consensus 58 ~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s----P~c~~~~ri~~~~np~~~~p~s~l~V 133 (933)
T KOG2114|consen 58 RGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS----PQCLYEHRIFTIKNPTNPSPASSLAV 133 (933)
T ss_pred ehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC----cceeeeeeeeccCCCCCCCcceEEEE
Confidence 4567777774444444444 68888877654 99999987542110 11111112222222234678999999
Q ss_pred CCCCCEEEEEECCCeEEEEECC-----CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce-EEEEeec
Q 010754 283 NGEGTLLATGSYDGQARIWSTN-----GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFH 356 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~ 356 (502)
+.+-+.+|+|-.+|.|..+.-+ +...........+|+++.+..++..++-+.....|.+|.+....+ ...+..+
T Consensus 134 s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~ 213 (933)
T KOG2114|consen 134 SEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN 213 (933)
T ss_pred EccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC
Confidence 9999999999999999998521 233333345678999999999888755555667899999874442 4446778
Q ss_pred cCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEE
Q 010754 357 SGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNC 403 (502)
Q Consensus 357 ~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~ 403 (502)
..++.+..+++... |+++ .+..+.+|+....++...|. ||......
T Consensus 214 G~~lnCss~~~~t~qfIca-~~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICA-GSEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred CccceeeecCCCCccEEEe-cCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 88888888877766 5554 55679999998888877887 76654433
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.6e-06 Score=79.63 Aligned_cols=212 Identities=15% Similarity=0.138 Sum_probs=147.1
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
+..+..|-+.|.+++.+-++-++.|++. |..++++|+.+-.....+....+ .+.+. ...++..
T Consensus 46 VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l---------------Pg~a~-wv~skGd 109 (558)
T KOG0882|consen 46 VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL---------------PGFAE-WVTSKGD 109 (558)
T ss_pred hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC---------------CCceE-EecCCCC
Confidence 4566789999999999999999999888 99999999987654322211110 11111 1112211
Q ss_pred --CEEEEE-ECCCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC-Cc-----eEEE--
Q 010754 287 --TLLATG-SYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EE-----WKQQ-- 352 (502)
Q Consensus 287 --~~l~s~-~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~-----~~~~-- 352 (502)
..|+++ -.+|.|.|+|-.+. ....-.-|..+|.++.+++-+..+++....|.|.-|.... .+ ....
T Consensus 110 ~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K 189 (558)
T KOG0882|consen 110 KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK 189 (558)
T ss_pred eeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccc
Confidence 133333 35689999996543 3334456999999999999999999999999999998762 11 1111
Q ss_pred -------EeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEe-----------------------------
Q 010754 353 -------FEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFA----------------------------- 395 (502)
Q Consensus 353 -------~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~----------------------------- 395 (502)
+.-......++.+++.+. +.+-+.|..|++++..+++.++.+.
T Consensus 190 ~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaver 269 (558)
T KOG0882|consen 190 HETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVER 269 (558)
T ss_pred ccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHh
Confidence 111234567888877654 6777899999999999887554332
Q ss_pred ---cCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 396 ---GHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 396 ---~h~-~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
.|. ..-+.+.|+..|++|+-|+-=| |++.++.++.+++.+
T Consensus 270 elek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 270 ELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 121 1235678999999999998877 899999999887765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.8e-05 Score=67.42 Aligned_cols=177 Identities=14% Similarity=0.121 Sum_probs=112.8
Q ss_pred CCCEEEEEECCCeEEEEEC-CCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE-eeccCC---
Q 010754 285 EGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGP--- 359 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~--- 359 (502)
++..+++++.++.|..||. .++.+..... ...+.... ...+..+++++.++.++.+|..+|+.+... ......
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~ 112 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV 112 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence 5667888899999999997 5666665554 22222211 224566777778899999999999998884 322111
Q ss_pred --eEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCc----------EEEEEEcCCCCEEEEEeCCCc-EEEEE
Q 010754 360 --TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE----------VNCVKWDPTGSLLASCSDDVT-AKIWN 426 (502)
Q Consensus 360 --v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~----------i~~l~~sp~g~~las~s~dg~-i~iwd 426 (502)
....... +..++++..++.|+.+|..+++.+..+...... +.+-....++ .+..++.+|. +.+ |
T Consensus 113 ~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d 189 (238)
T PF13360_consen 113 RSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D 189 (238)
T ss_dssp B--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred ccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence 1111222 667888888999999999999998888764422 1222222345 7777777775 555 9
Q ss_pred CCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 427 ~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.+++.+.... ...+..+ ..+++. .+++++.++.+..|+.
T Consensus 190 ~~tg~~~w~~~--~~~~~~~-~~~~~~-------~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 190 LATGEKLWSKP--ISGIYSL-PSVDGG-------TLYVTSSDGRLYALDL 229 (238)
T ss_dssp TTTTEEEEEEC--SS-ECEC-EECCCT-------EEEEEETTTEEEEEET
T ss_pred CCCCCEEEEec--CCCccCC-ceeeCC-------EEEEEeCCCEEEEEEC
Confidence 99999665333 2223322 334444 5666666777777753
|
... |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=75.71 Aligned_cols=162 Identities=13% Similarity=0.145 Sum_probs=99.4
Q ss_pred EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce-EEEEeeccCCeEEEEecCCCEEEEEeCCC------eEEE
Q 010754 310 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEFHSGPTLDVDWRNNVSFATSSTDN------MIYV 382 (502)
Q Consensus 310 ~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~~~~~~d~------~i~i 382 (502)
.+..|..+-.+-..+-.++.++++..||.+.+++.+.-.. .+.+........+.++.....++..+.=| ..+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 3334444433333344567899999999999999765211 11111111112222222223344333333 3455
Q ss_pred EEcCCCcceEEEecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeE-EEeccCCCcEEEEEEccCCCCCCCCCc
Q 010754 383 CKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQ 460 (502)
Q Consensus 383 ~d~~~~~~~~~~~~h~~~i~~l~~sp~g-~~las~s~dg~i~iwd~~~~~~~-~~~~~h~~~i~~v~~sp~g~~~~~~~~ 460 (502)
|+++..+.+..-......|++++-+|.. .++++|+.||.+-+||.++.... ..+++|..+|+.+-|+|... .
T Consensus 164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p------~ 237 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP------E 237 (319)
T ss_pred ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc------h
Confidence 5554433221111123349999999965 46677888999999999987544 45569999999999999876 5
Q ss_pred cEEEEeecCceEEEEee
Q 010754 461 QLILARLIPYFLYWICS 477 (502)
Q Consensus 461 ~l~las~~~~~~iw~~~ 477 (502)
.|++++.||.+-.|+-+
T Consensus 238 ~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAS 254 (319)
T ss_pred heeEecCCCcEEEEcCC
Confidence 78999999988878655
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00031 Score=64.49 Aligned_cols=169 Identities=12% Similarity=0.086 Sum_probs=109.2
Q ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEe-cCCCEEEEEecCCeEEEEEcCCCceEEEEee-
Q 010754 279 TLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF- 355 (502)
Q Consensus 279 ~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~- 355 (502)
++.|.+ ++.++++-...+.|..|+..+.....+.... ...+++. ++ ..|+.+... .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 577888 6777777667899999999887665544333 6778888 55 555555554 455559998876555544
Q ss_pred ----ccCCeEEEEecCCCEEEEEeC-C--------CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEE-EEeCCCc
Q 010754 356 ----HSGPTLDVDWRNNVSFATSST-D--------NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVT 421 (502)
Q Consensus 356 ----~~~~v~~v~~~~~~~~~~~~~-d--------~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la-s~s~dg~ 421 (502)
......++.+.+++.+..+.. . |.|+.++.. ++.. .+...-...+.|+|+|+++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-VVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE-EEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE-EEecCcccccceEECCcchheeecccccce
Confidence 233578889988776655543 2 457777776 4433 3333456688999999999775 5566788
Q ss_pred EEEEECCCCe-------eEEEeccCCCcEEEEEEccCCC
Q 010754 422 AKIWNMKQDK-------YVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 422 i~iwd~~~~~-------~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
|..+++.... .+..+....+..-.+++..+|.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 9999885322 1222222223477889998887
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.1e-05 Score=76.29 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=129.0
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCC-eEEEEECCCCCEEEEEECCC----
Q 010754 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD-VTTLDWNGEGTLLATGSYDG---- 296 (502)
Q Consensus 222 ~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~g~~l~s~~~dg---- 296 (502)
+|++.+..++.|+.+|.|.+.+-.- + ....+..+... |+.+-...+..+|++.+.|+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~-~-----------------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF-Q-----------------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc-e-----------------eeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence 5678888999999999988776321 0 00111122233 44443333446788877764
Q ss_pred -eEEEEECCC----c-e-EE---EecC-----ccCCeEEEEEecCCCEEEEEecCCeEEEEEc---C-CCceEEEEeecc
Q 010754 297 -QARIWSTNG----D-L-KC---TLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV---K-TEEWKQQFEFHS 357 (502)
Q Consensus 297 -~i~iwd~~~----~-~-~~---~~~~-----~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~---~-~~~~~~~~~~~~ 357 (502)
.++||+++. . . .. .... ...++.+++.+.+-+.+++|-.+|.|..+.- + .+....-.....
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK 171 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence 589999652 1 1 11 1222 3567899999999899999999999999842 1 122122222346
Q ss_pred CCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcc-eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 358 GPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 358 ~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
.+|+.+.+..+.. .+...+-..|.+|.+....| ..++..|...++|..+++....++.|+.. .|.+|+....+.-..
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFA 250 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeee
Confidence 6899999955443 24444556788888874443 45578888899999999766645555544 599999876666566
Q ss_pred ec-cCCC
Q 010754 436 LR-EHSK 441 (502)
Q Consensus 436 ~~-~h~~ 441 (502)
+. +|..
T Consensus 251 f~~g~kk 257 (933)
T KOG2114|consen 251 FEVGEKK 257 (933)
T ss_pred ecCCCeE
Confidence 65 5554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-05 Score=71.45 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=63.5
Q ss_pred ccCCCCeEEEEECCCCC-EEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCc
Q 010754 271 NEKSKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEE 348 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~ 348 (502)
..+...|..++|+|..+ ++..++.+..|+|.|++...+........++++++|.-+. ++|++|...|.|.+||++..+
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 34567899999999877 7889999999999999876555433333899999998765 678899999999999998643
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=81.24 Aligned_cols=181 Identities=16% Similarity=0.200 Sum_probs=130.8
Q ss_pred CCCEEEEEECCCeEEEEECCCceEEEe-cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
++..++.|+....+..+|+++...... .-..+.|+-|+. +++++.+|...|+|.+-|.++.+.++++..|.+.+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677788778888889876544333 333335666654 57899999999999999999999999999999999999
Q ss_pred EecCCCEEEEEe--------CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEEC---CCC-
Q 010754 364 DWRNNVSFATSS--------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNM---KQD- 430 (502)
Q Consensus 364 ~~~~~~~~~~~~--------~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~---~~~- 430 (502)
+...+..+.+|- .|..|.|||++..+.+.-+.-+-++ .-+.|+|. ...++.+|..|...+-|. .+.
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 977665444442 3566899999987765555444433 45778886 456888888999999883 322
Q ss_pred eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
--+..+......|.++.+|++|. .+..+-.++.+.+|-
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~-------alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGD-------ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCc-------eEEEecccCcEeeec
Confidence 11233334455699999999998 556666678888885
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0003 Score=68.49 Aligned_cols=236 Identities=15% Similarity=0.174 Sum_probs=130.9
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccC-CCCC--------------CCceeEEEee-----------ecCcc
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG-GAQN--------------GPLNVLVLKH-----------VKGRT 270 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~-~~~~--------------~~~~~~~~~~-----------~~~~~ 270 (502)
.|+.+.|.++..-|+.|...|.|.||.+...+... .... .+.....+.+ .....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999998889999999999999886553322 0000 0001111100 00111
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEe---cC------ccCCeEEEEEec-----CC---CEEEEE
Q 010754 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL---SK------HKGPIFSLKWNK-----KG---DYLLTG 333 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~---~~------~~~~v~~l~~~~-----~~---~~l~s~ 333 (502)
....+.|++++.| |=-++|.|..+|.+.|.|+++..+.-. .. ....|+++.|.- ++ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 1236789999997 445999999999999999987644322 11 234678888862 22 478899
Q ss_pred ecCCeEEEEEcC--C-CceEEEE----eeccCCeEEEEec-C---------------------CCEEEEEeCCCeEEEEE
Q 010754 334 SCDKTAIVWDVK--T-EEWKQQF----EFHSGPTLDVDWR-N---------------------NVSFATSSTDNMIYVCK 384 (502)
Q Consensus 334 ~~d~~i~~wd~~--~-~~~~~~~----~~~~~~v~~v~~~-~---------------------~~~~~~~~~d~~i~i~d 384 (502)
...|.+.+|.+. . +.....+ ..+.+++..+..- . -..+++...+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999874 1 2222222 1344555555431 1 12266667789999999
Q ss_pred cCCCcceEEEecCCCcEEEEEE-----cCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC----CcEEEEEEccCCC
Q 010754 385 IGENRPIKTFAGHQGEVNCVKW-----DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS----KEIYTIRWSPTGS 453 (502)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~l~~-----sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~----~~i~~v~~sp~g~ 453 (502)
..+.+...+.....-....+.+ ...+..|++-..+|.|+++.+..-+.+..++... ..+....++++|.
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 9888766555422222333444 2356778888999999999999988887776432 2344566777776
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=79.29 Aligned_cols=147 Identities=16% Similarity=0.257 Sum_probs=104.0
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
|...|.--++...+++++.|+.-|.+.+|+-..+..... ...+....+..+..+++..++|.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~----------------~~~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL----------------KNEGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc----------------cccCccceEEEEEecchhHhhhhhc
Confidence 334455556777899999999999999999777653211 1111234567778899999999999
Q ss_pred CCCeEEEEECCCc----eEEEe---cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC----ceEEEEeeccCCeEE
Q 010754 294 YDGQARIWSTNGD----LKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE----EWKQQFEFHSGPTLD 362 (502)
Q Consensus 294 ~dg~i~iwd~~~~----~~~~~---~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~ 362 (502)
..|.|.++-++.. ..... ..|+..|++++|++++..+++|...|+|.+-.+.+. ...+.+....+.|.-
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQ 175 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQ 175 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEE
Confidence 9999999976532 22211 236789999999999999999999999999888762 112333334567777
Q ss_pred EEecCCCEEEEEeC
Q 010754 363 VDWRNNVSFATSST 376 (502)
Q Consensus 363 v~~~~~~~~~~~~~ 376 (502)
+++.....+++...
T Consensus 176 lD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 176 LDYLQSYLLVSTLT 189 (726)
T ss_pred eecccceehHhhhh
Confidence 88776666555443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0012 Score=65.12 Aligned_cols=172 Identities=15% Similarity=0.215 Sum_probs=95.8
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEe-------cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~ 347 (502)
+.+.++.|+.+. .|++-..||.+++||..|.....+ ......+....+..+|-.+++ .++.+.+..--..
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccc
Confidence 579999998864 555667899999999877661111 111122333333345533333 3455554432221
Q ss_pred c-eEEEEeeccCCeEE----------EEec-CCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEE
Q 010754 348 E-WKQQFEFHSGPTLD----------VDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 348 ~-~~~~~~~~~~~v~~----------v~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las 415 (502)
. ..+.+......... ..+. .....+....++.+.+.+...... +. ..+++..|++||+|++||.
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl 233 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIAL 233 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEE
Confidence 1 11111100000000 1111 122233334444554333222111 11 2468999999999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEeccC-CCcEEEEEEccCCC
Q 010754 416 CSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGS 453 (502)
Q Consensus 416 ~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~v~~sp~g~ 453 (502)
-..+|.+.|.+..-.+.+..+... ......+.|.-+..
T Consensus 234 ~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 234 FTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 999999999987766776666633 45678999998876
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.5e-07 Score=88.95 Aligned_cols=176 Identities=19% Similarity=0.294 Sum_probs=118.5
Q ss_pred CCeEEEEECCCC--CEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecC-CCEEEEEe----cCCeEEEEEc
Q 010754 275 KDVTTLDWNGEG--TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK-GDYLLTGS----CDKTAIVWDV 344 (502)
Q Consensus 275 ~~v~~l~~s~~g--~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~-~~~l~s~~----~d~~i~~wd~ 344 (502)
..+.|++++-+. .++++|..+|.|.+-..+.. ......++..+.++++|++- .+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 457788876543 58899999999999886532 24456778899999999984 45566552 2568999999
Q ss_pred CCC--ceEEE--Eee-ccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcc-eEEEecCCCcEEEEEEcC-CCCEEEEE
Q 010754 345 KTE--EWKQQ--FEF-HSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRP-IKTFAGHQGEVNCVKWDP-TGSLLASC 416 (502)
Q Consensus 345 ~~~--~~~~~--~~~-~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~i~~l~~sp-~g~~las~ 416 (502)
.++ .+... |.. .......++|..+.. +++|...+.+.++|++.... ...+ .+..+..+..+| .+.|+++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 876 22222 222 334456888865554 56677777999999985422 2222 234566788888 78898877
Q ss_pred eCCCcEEEEE-CCCC-eeEEEeccCC----CcEEEEEEccCCC
Q 010754 417 SDDVTAKIWN-MKQD-KYVHDLREHS----KEIYTIRWSPTGS 453 (502)
Q Consensus 417 s~dg~i~iwd-~~~~-~~~~~~~~h~----~~i~~v~~sp~g~ 453 (502)
+ ||.|-+|| .++- +++..+.... ..+..++|+|...
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 6 89999999 3332 2333333222 2389999999876
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.1e-05 Score=75.60 Aligned_cols=73 Identities=23% Similarity=0.425 Sum_probs=60.4
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.+.+.|.|++++|+...|+.|+.||+|.+||...+... .. ...-..+.++|+|+|.++++|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~------------~~-------ka~~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL------------LA-------KAEFIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee------------ee-------eecccceEEEEcCCCcEEEEE
Confidence 56788999999999999999999999999998765311 00 012247899999999999999
Q ss_pred ECCCeEEEEECC
Q 010754 293 SYDGQARIWSTN 304 (502)
Q Consensus 293 ~~dg~i~iwd~~ 304 (502)
+..|.+.+||+.
T Consensus 318 s~qGelQ~FD~A 329 (545)
T PF11768_consen 318 SEQGELQCFDMA 329 (545)
T ss_pred cCCceEEEEEee
Confidence 999999999964
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-06 Score=84.60 Aligned_cols=196 Identities=18% Similarity=0.290 Sum_probs=124.5
Q ss_pred CceEEEEEcCC--CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEE
Q 010754 216 SEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATG 292 (502)
Q Consensus 216 ~~V~~~~~~p~--~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~ 292 (502)
..+.|++++-+ ..+++.|..+|.|.+-.+....-. ......++....++++|++ |.+.||.|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------s~E~tp~~ar~Ct~lAwneLDtn~LAag 121 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------SAEVTPGYARPCTSLAWNELDTNHLAAG 121 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------cceecccccccccccccccccHHHHHhh
Confidence 44678887764 358999999999999887654311 0112234456799999998 55677766
Q ss_pred E----CCCeEEEEECCCce-----EEEecC-ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeE
Q 010754 293 S----YDGQARIWSTNGDL-----KCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTL 361 (502)
Q Consensus 293 ~----~dg~i~iwd~~~~~-----~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~ 361 (502)
- .|..+.|||+.... ...+.. ......+++|..+.+.+++|...+.+.++|++.. .....+. ...+.
T Consensus 122 ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vq 199 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQ 199 (783)
T ss_pred hhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hhhcc
Confidence 3 34689999976431 112222 3344568999988899999999999999999732 1122221 11233
Q ss_pred EEEecC-CCEEEEEeCCCeEEEEE-cCCC-cceEEEecCCC----cEEEEEEcCCC-CEEEEEeC-CCcEEEEECC
Q 010754 362 DVDWRN-NVSFATSSTDNMIYVCK-IGEN-RPIKTFAGHQG----EVNCVKWDPTG-SLLASCSD-DVTAKIWNMK 428 (502)
Q Consensus 362 ~v~~~~-~~~~~~~~~d~~i~i~d-~~~~-~~~~~~~~h~~----~i~~l~~sp~g-~~las~s~-dg~i~iwd~~ 428 (502)
.+...| ..-.++...||.|-+|| .++- .++..+..... .+..++|+|.. .++++++. .++|+.+|+.
T Consensus 200 G~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 333333 22345556699999999 4432 33333332222 38899999963 35566665 4789999974
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00041 Score=68.48 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=85.8
Q ss_pred ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEE
Q 010754 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393 (502)
Q Consensus 314 ~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 393 (502)
.......+.++|+|+++++ +.||...++.....+... .+......|.+.+.|++-...+.|.++.--+....+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 3445788999999999888 568888888754443322 2344578898899999999899999975444444444
Q ss_pred EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEE
Q 010754 394 FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLY 473 (502)
Q Consensus 394 ~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~i 473 (502)
+... ..+..|-. |.+|+..+.+ .|.+||+.+++.++++... +|..|.|+++|. .+.+. ++..+.+
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~-------~val~-t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGE-------LVALV-TKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSS-------EEEEE--S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCC-------EEEEE-eCCeEEE
Confidence 4422 23444432 8888777765 7999999999999999743 489999999998 44444 4556666
Q ss_pred EEeee
Q 010754 474 WICSI 478 (502)
Q Consensus 474 w~~~~ 478 (502)
+..+.
T Consensus 170 l~~~~ 174 (443)
T PF04053_consen 170 LKYNL 174 (443)
T ss_dssp EEE-H
T ss_pred EEecc
Confidence 65433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00048 Score=67.78 Aligned_cols=222 Identities=18% Similarity=0.238 Sum_probs=127.5
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEe---CC-CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGS---GD-STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs---~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
+.+..-...+..-+|+|++..++..+ .. ..+.++++.++....... ....-..-+|+|
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------------------~~g~~~~P~fsp 247 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN------------------FNGNNGAPAFSP 247 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec------------------cCCccCCccCCC
Confidence 34444456677789999987655442 22 458889988875321100 123345667999
Q ss_pred CCCEEEEEE-CCCe--EEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CC--eEEEEEcCCCceEEEEeeccC
Q 010754 285 EGTLLATGS-YDGQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFEFHSG 358 (502)
Q Consensus 285 ~g~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~ 358 (502)
||+.|+.+. .||. |.++|+.++....+....+.-..=.|+|+|++++-.+. .| .|.++|...+.. ..+....+
T Consensus 248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~ 326 (425)
T COG0823 248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG 326 (425)
T ss_pred CCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC
Confidence 999777654 5564 55667776665555544444456789999998886544 44 466667665554 44444444
Q ss_pred CeEEEEecCCCEEE-EEe-CCCe--EEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEEC-CCCee
Q 010754 359 PTLDVDWRNNVSFA-TSS-TDNM--IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNM-KQDKY 432 (502)
Q Consensus 359 ~v~~v~~~~~~~~~-~~~-~d~~--i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg-~i~iwd~-~~~~~ 432 (502)
.-..-.|++++..+ ..+ .+|. |.+.|+.++..+..+. +......-.|.|+|+.+...+..+ .=.++.+ .+++.
T Consensus 327 ~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~ 405 (425)
T COG0823 327 GNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRV 405 (425)
T ss_pred CCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEEeecccee
Confidence 44466777776533 333 2444 6666666655444443 334445667888888877655533 2222222 23333
Q ss_pred EEEeccCCCcEEEEEEcc
Q 010754 433 VHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp 450 (502)
...+..-.+.+..-+|+|
T Consensus 406 ~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 406 SRPLPLADGDVRVPAWSP 423 (425)
T ss_pred EEEEeccCcceecccccC
Confidence 333333334555555654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0021 Score=63.62 Aligned_cols=221 Identities=9% Similarity=0.049 Sum_probs=125.4
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG- 305 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~- 305 (502)
+..++.+..++.+..+|..+++..-....... .........++. .+..++.++.+|.+..+|...
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--------~~~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVP--------SLTLRGESAPAT------AFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCC--------cccccCCCCCEE------ECCEEEEEcCCCEEEEEEccCC
Confidence 34566677788888888888775432211100 000000011111 123566677788888887653
Q ss_pred ceEEEecCcc----C---CeEEEEEec--CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeC
Q 010754 306 DLKCTLSKHK----G---PIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST 376 (502)
Q Consensus 306 ~~~~~~~~~~----~---~v~~l~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~ 376 (502)
.......... . ....+.-+| .+..+++++.+|.+..+|..+|+.+....... ...+. ..++.+++++.
T Consensus 226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~-~~~~~vy~~~~ 302 (394)
T PRK11138 226 QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--VNDFA-VDGGRIYLVDQ 302 (394)
T ss_pred hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--ccCcE-EECCEEEEEcC
Confidence 3332221100 0 001111122 24577778889999999999998766543221 11122 23566777889
Q ss_pred CCeEEEEEcCCCcceEEEecCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCC
Q 010754 377 DNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 455 (502)
Q Consensus 377 d~~i~i~d~~~~~~~~~~~~h~-~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~ 455 (502)
++.++.+|..+++.+.....-. ....+... .+.+|+.++.||.|++.|..+|+.+...+.....+.+ +|-
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s---~P~---- 373 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLS---EPV---- 373 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccee---CCE----
Confidence 9999999999987765443211 11222222 2557788999999999999999988777643333322 111
Q ss_pred CCCCccEEEEeecCceEEE
Q 010754 456 NNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 456 ~~~~~~l~las~~~~~~iw 474 (502)
..+..+++++.++.+..+
T Consensus 374 -~~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 374 -VADDKLLIQARDGTVYAI 391 (394)
T ss_pred -EECCEEEEEeCCceEEEE
Confidence 012367888888876553
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.4e-05 Score=74.62 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=63.9
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc
Q 010754 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (502)
Q Consensus 272 ~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~ 348 (502)
+....|.+++++|+...++.|+.||.|.+||......... ...-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 3456799999999999999999999999999776544333 445667899999999999999999999999986543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00095 Score=65.93 Aligned_cols=220 Identities=13% Similarity=0.166 Sum_probs=114.4
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+....-....+.++|+|++++.+ .||.-.|+....... + ..+.....+|.+.+ .+|
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~--------------k--------~~G~g~~~vw~~~n-~yA 83 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN--------------K--------AFGSGLSFVWSSRN-RYA 83 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE--------------E--------EEEE-SEEEE-TSS-EEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc--------------c--------ccCceeEEEEecCc-cEE
Confidence 33344456789999999988885 568888887332210 0 01235678899855 466
Q ss_pred EEECCCeEEEEE-CCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC
Q 010754 291 TGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV 369 (502)
Q Consensus 291 s~~~dg~i~iwd-~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~ 369 (502)
+-..++.|.|+. .+......+.. ...+..|-. |..|...+. +.|.+||+.+++.++.+... +|..+.|++++
T Consensus 84 v~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g 156 (443)
T PF04053_consen 84 VLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDG 156 (443)
T ss_dssp EE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTS
T ss_pred EEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCC
Confidence 677688999974 43322112211 122343332 776666654 48999999999999988744 38999999987
Q ss_pred EEEEEeCCCeEEEEEcCCC-----------cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 370 SFATSSTDNMIYVCKIGEN-----------RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~-----------~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
.+++-..+..+++++.... ..+..+..-...|.+.+|..+ .++-.+.. .|+.+ ..|.. ..+..
T Consensus 157 ~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ 230 (443)
T PF04053_consen 157 ELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAH 230 (443)
T ss_dssp SEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE
T ss_pred CEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEE
Confidence 7666666778888775543 133444333567888999866 44333333 67663 33332 22222
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
-..+++=+...|... .+++.-.++.+..+
T Consensus 231 ld~~~yllgy~~~~~-------~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 231 LDKPLYLLGYLPKEN-------RLYLIDRDGNVISY 259 (443)
T ss_dssp -SS--EEEEEETTTT-------EEEEE-TT--EEEE
T ss_pred cCCceEEEEEEccCC-------EEEEEECCCCEEEE
Confidence 345677777777544 45555555555444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00045 Score=64.23 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=62.5
Q ss_pred eEEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
...+.+|...|..++|+|..+ ++..++.+.+|+|.|+++...... ... ...+++++|.-+.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-----------------y~a-~~~~wSC~wDlde 247 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-----------------YIA-YNQIWSCCWDLDE 247 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-----------------eec-cCCceeeeeccCC
Confidence 446778889999999999765 889999999999999998653221 111 2569999998765
Q ss_pred -CEEEEEECCCeEEEEECC
Q 010754 287 -TLLATGSYDGQARIWSTN 304 (502)
Q Consensus 287 -~~l~s~~~dg~i~iwd~~ 304 (502)
.+|+.|..+|.|.|||++
T Consensus 248 ~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cceeEEeccCceEEEEEcc
Confidence 578888889999999975
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0031 Score=61.26 Aligned_cols=248 Identities=17% Similarity=0.248 Sum_probs=127.0
Q ss_pred eeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecC-ccc-cCCCCeEE
Q 010754 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-RTN-EKSKDVTT 279 (502)
Q Consensus 202 ~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~ 279 (502)
++....+..+......+....|+|+|+.+|.... +.|.++++.++....-...+...+. ..... ... .--..-.+
T Consensus 29 d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~--nG~~dwvyeEEv~~~~~~ 105 (353)
T PF00930_consen 29 DIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIY--NGVPDWVYEEEVFDRRSA 105 (353)
T ss_dssp ETTTTEEEESS-EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEE--ESB--HHHHHHTSSSSBS
T ss_pred ecCCCceEECcCCccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEE--cCccceeccccccccccc
Confidence 3444444555444677889999999999998864 7899999877643221111111100 00000 000 00122467
Q ss_pred EEECCCCCEEEEEECC-CeEEEE-----------------------------------ECCCceEEEe------cCccCC
Q 010754 280 LDWNGEGTLLATGSYD-GQARIW-----------------------------------STNGDLKCTL------SKHKGP 317 (502)
Q Consensus 280 l~~s~~g~~l~s~~~d-g~i~iw-----------------------------------d~~~~~~~~~------~~~~~~ 317 (502)
+-|||||++||....| ..|..+ ++.+.....+ .....-
T Consensus 106 ~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~y 185 (353)
T PF00930_consen 106 VWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYY 185 (353)
T ss_dssp EEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEE
T ss_pred eEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccC
Confidence 8899999998887654 223222 2211111000 012234
Q ss_pred eEEEEEecCCCEEEEEec--CC---eEEEEEcCCCceEEEEeecc-CC---eEEEEec--CCCE-EEEEeCCCe--EEEE
Q 010754 318 IFSLKWNKKGDYLLTGSC--DK---TAIVWDVKTEEWKQQFEFHS-GP---TLDVDWR--NNVS-FATSSTDNM--IYVC 383 (502)
Q Consensus 318 v~~l~~~~~~~~l~s~~~--d~---~i~~wd~~~~~~~~~~~~~~-~~---v~~v~~~--~~~~-~~~~~~d~~--i~i~ 383 (502)
+..+.|.+++..|+..-. +. .+.++|..++.....+.... +. .....+. ++.. +.....+|. |+++
T Consensus 186 l~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 186 LTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred cccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 678889888884444332 22 46777887776544443322 11 1233332 3333 444446665 4555
Q ss_pred EcCCCcceEEEecCCCcEEE-EEEcCCCCEEE-EEeCCC----cEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 384 KIGENRPIKTFAGHQGEVNC-VKWDPTGSLLA-SCSDDV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 384 d~~~~~~~~~~~~h~~~i~~-l~~sp~g~~la-s~s~dg----~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+...+. ...+....-.|+. +.|+++++.|. ++..++ .|+.-++..+..+..+....+.-..+.|||+|+
T Consensus 266 ~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 266 DLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp ETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred cccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence 555554 3344444556755 67888877554 555432 455556662334455553333337999999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.6e-06 Score=50.49 Aligned_cols=31 Identities=35% Similarity=0.546 Sum_probs=28.6
Q ss_pred cchhhHHHHHHHHhcCCcchhhcccccccCc
Q 010754 6 SEELNYLVFRYLQESGLLHSAFVLGYEAGIN 36 (502)
Q Consensus 6 s~evn~li~rYlqE~g~~~sA~~~~~e~~~~ 36 (502)
-.++|.||+.||++.||..||.+|.+|+.+.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 3679999999999999999999999999875
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0091 Score=54.07 Aligned_cols=179 Identities=13% Similarity=0.198 Sum_probs=104.8
Q ss_pred CCCeEEEEECCCCC-EEEEEECCCeEEEEECCCceEEEecCc-cCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc---
Q 010754 274 SKDVTTLDWNGEGT-LLATGSYDGQARIWSTNGDLKCTLSKH-KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--- 348 (502)
Q Consensus 274 ~~~v~~l~~s~~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~--- 348 (502)
...+..++|+|+.+ ++++....+.|..++.+++.+....-. .+..-.|++..++.++++.-.++.+.++++....
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 34599999999755 666667778999999988877665433 3567889998888777776678999999883321
Q ss_pred -e--EEEEe-----eccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCC---CcceEEE--------ecCCCcEEEEEEcC
Q 010754 349 -W--KQQFE-----FHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGE---NRPIKTF--------AGHQGEVNCVKWDP 408 (502)
Q Consensus 349 -~--~~~~~-----~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~---~~~~~~~--------~~h~~~i~~l~~sp 408 (502)
. ...+. .+...+-.++|.+ .+.|+++....-..+|.+.. ...+... ......+.++.++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1 12222 1233578899966 46676666665566666653 2111111 11234688999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCCeeEEEeccCC---------CcEEEEEEccCCC
Q 010754 409 T-GSLLASCSDDVTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPTGS 453 (502)
Q Consensus 409 ~-g~~las~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~v~~sp~g~ 453 (502)
. |.+++.+.....|.++| .+|+.+..+.-.. ...-.|+|.++|.
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 6 45667777788899999 7777766554222 2578999999997
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.002 Score=63.62 Aligned_cols=148 Identities=20% Similarity=0.278 Sum_probs=80.3
Q ss_pred eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee----ccCCeEE-----EEecC
Q 010754 297 QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF----HSGPTLD-----VDWRN 367 (502)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~-----v~~~~ 367 (502)
.|+||+..|..+....-..+.|.++.|+.+ ..|++...||.+++||+. |.. .+.. ....|.. ..+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCC
Confidence 599999999888776555589999999885 556677899999999986 333 2221 1112222 23333
Q ss_pred CCEEEEEeCCCeEEEEEcCCCc-ceEEE---ecCCC------cEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 368 NVSFATSSTDNMIYVCKIGENR-PIKTF---AGHQG------EVNC-VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 368 ~~~~~~~~~d~~i~i~d~~~~~-~~~~~---~~h~~------~i~~-l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
.+.++ -..++.+++..-.... ..+.+ .+... .... ..++.+....+....++.+.+-+-...+. +
T Consensus 138 ~Givv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 138 NGIVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred CCEEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 44333 3445555444322211 11111 11000 0111 23444445555555555555333222111 2
Q ss_pred ccCCCcEEEEEEccCCC
Q 010754 437 REHSKEIYTIRWSPTGS 453 (502)
Q Consensus 437 ~~h~~~i~~v~~sp~g~ 453 (502)
. ..+++..|+.||+|+
T Consensus 214 ~-~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGK 229 (410)
T ss_pred c-CCCCeEEEEECCCCC
Confidence 2 346899999999998
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0087 Score=54.20 Aligned_cols=198 Identities=13% Similarity=0.169 Sum_probs=110.0
Q ss_pred EEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 209 TILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+.+.+-...+..++|+|+.. ++++....+.|...+.. ++.+ +.... ......-.|++..++.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vl-------------r~i~l---~g~~D~EgI~y~g~~~ 77 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVL-------------RRIPL---DGFGDYEGITYLGNGR 77 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EE-------------EEEE----SS-SSEEEEEE-STTE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEE-------------EEEeC---CCCCCceeEEEECCCE
Confidence 34556667799999999755 66666667777766653 3321 11111 1135688899988887
Q ss_pred EEEEEECCCeEEEEECCC--c-----eEEEe----c-CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC---CceEEE
Q 010754 288 LLATGSYDGQARIWSTNG--D-----LKCTL----S-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---EEWKQQ 352 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~--~-----~~~~~----~-~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~ 352 (502)
++++--.++.+.++++.. . ....+ . .++..+-.++|+|.++.|+++-...-..+|.+.. ...+..
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EE
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceee
Confidence 777665689999888631 1 11111 1 2456689999999988888887776666776653 222211
Q ss_pred Ee--------eccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecCC---------CcEEEEEEcCCCCEE
Q 010754 353 FE--------FHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDPTGSLL 413 (502)
Q Consensus 353 ~~--------~~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~---------~~i~~l~~sp~g~~l 413 (502)
.. .....+.++.+.+. ..++.+..+..|..+| .+++++..+.-.. ...-.|+|+++|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 11 12234677777653 5678888888999999 6777766554222 246789999999765
Q ss_pred EEEeCCCcEEEE
Q 010754 414 ASCSDDVTAKIW 425 (502)
Q Consensus 414 as~s~dg~i~iw 425 (502)
++ |+-+..+++
T Consensus 237 Iv-sEpNlfy~f 247 (248)
T PF06977_consen 237 IV-SEPNLFYRF 247 (248)
T ss_dssp EE-ETTTEEEEE
T ss_pred EE-cCCceEEEe
Confidence 55 455555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.011 Score=56.56 Aligned_cols=184 Identities=10% Similarity=0.106 Sum_probs=109.6
Q ss_pred CCEEEEEEC---------C-CeEEEEECCCc-----eEE--EecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc
Q 010754 286 GTLLATGSY---------D-GQARIWSTNGD-----LKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (502)
Q Consensus 286 g~~l~s~~~---------d-g~i~iwd~~~~-----~~~--~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~ 348 (502)
..+|++|+. . |.|.++++... ... ......++|++++-. + .+|+++ .++.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~-~~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-N-GRLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-T-TEEEEE-ETTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-C-CEEEEe-ecCEEEEEEccCcc
Confidence 467887763 2 88999997762 222 223457899999876 3 344443 46899999998887
Q ss_pred -eEEEEee-ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCC-CcceEEEec--CCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 010754 349 -WKQQFEF-HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAK 423 (502)
Q Consensus 349 -~~~~~~~-~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~--h~~~i~~l~~sp~g~~las~s~dg~i~ 423 (502)
....-.. ....+.++....+ .+++|..-..+.++.... ...+..+.. ....++++.|-++++.++.+..+|.|.
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~ 197 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLF 197 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEE
T ss_pred cchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEE
Confidence 4443333 3335666666544 788888888887775543 222333322 345688888886777999999999999
Q ss_pred EEECCC-------C--eeE--EEeccCCCcEEEE---EEccC-CCCCCCCCccEEEEeecCceEEE
Q 010754 424 IWNMKQ-------D--KYV--HDLREHSKEIYTI---RWSPT-GSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 424 iwd~~~-------~--~~~--~~~~~h~~~i~~v---~~sp~-g~~~~~~~~~l~las~~~~~~iw 474 (502)
++.... + ++. ..+. ....|+++ ++.|. +.........++.++.+|.+-+-
T Consensus 198 ~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 198 VLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 998752 1 222 2332 33457777 55563 11001113458889999887744
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00038 Score=69.31 Aligned_cols=198 Identities=11% Similarity=0.129 Sum_probs=124.1
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecC--ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE-
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ- 352 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~- 352 (502)
.|.--+++..+++++.|+.-|.+++|+..++....+.. ..+.+..+..+++..++++|+..|.|.++-+..+.....
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 45555566788999999999999999988766655543 556677778888888888999999999998765432111
Q ss_pred ----E-eeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCC----cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 353 ----F-EFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 353 ----~-~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~----~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
+ ..|...|++++|+++. .+.+|...|+|..-.+... ...+.+-.-.+.|..+.+. ++.+|++...- -
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~r--~ 191 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLTR--C 191 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhhh--h
Confidence 1 1267789999998765 4899999999988888772 1223333345678777765 34444444332 2
Q ss_pred EEEECCCCeeEEEec-cCCCc-EEEEEEccCCCCCCCCCccEEEEeecCceEEEEeeeEE
Q 010754 423 KIWNMKQDKYVHDLR-EHSKE-IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYF 480 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~-~h~~~-i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~~~ 480 (502)
.++++..++.-+.=+ .-.+. -...+|-|--. .. ....+-.+-...++|-.++..
T Consensus 192 ~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~---~~-q~~~IycaRPG~RlWead~~G 247 (726)
T KOG3621|consen 192 ILCQTEAETITQIGKKPRKSLIDFGACFFPGQC---KA-QKPQIYCARPGLRLWEADFAG 247 (726)
T ss_pred heeecchhHHHHhcCCCcCCccccceEEeeccc---cC-CCceEEEecCCCceEEeecce
Confidence 344444332111111 11121 34556666411 11 123455566778899665543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.026 Score=52.14 Aligned_cols=190 Identities=12% Similarity=0.022 Sum_probs=121.6
Q ss_pred CeEEEEECC-CCCEEEEEECCC-eEEEEECCC-ceEEEecCccCCe--EEEEEecCCCEEEEEec-----CCeEEEEEcC
Q 010754 276 DVTTLDWNG-EGTLLATGSYDG-QARIWSTNG-DLKCTLSKHKGPI--FSLKWNKKGDYLLTGSC-----DKTAIVWDVK 345 (502)
Q Consensus 276 ~v~~l~~s~-~g~~l~s~~~dg-~i~iwd~~~-~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~-----d~~i~~wd~~ 345 (502)
....++.+| .+..++.+-.-| ...+||..+ .....+....+.- =.-+|+++|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 355677888 556666776665 456788664 3333443322221 13579999999998643 5789999998
Q ss_pred -CCceEEEEeeccCCeEEEEecCCC-EEEEEe------------------CCCeEEEEEcCCCcceEEEe----cCCCcE
Q 010754 346 -TEEWKQQFEFHSGPTLDVDWRNNV-SFATSS------------------TDNMIYVCKIGENRPIKTFA----GHQGEV 401 (502)
Q Consensus 346 -~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~------------------~d~~i~i~d~~~~~~~~~~~----~h~~~i 401 (502)
+.+.+..+..+.-..-.+.+.+++ .++++. .+-.+...|..+++.+.+.. -|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 666777777776666777777766 454442 23345566777887776633 367789
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------EEEEECCCCeeEEEec-------cCCCcEEEEEEccCCCCCCCCCccEEEEee
Q 010754 402 NCVKWDPTGSLLASCSDDVT-------AKIWNMKQDKYVHDLR-------EHSKEIYTIRWSPTGSGTNNPNQQLILARL 467 (502)
Q Consensus 402 ~~l~~sp~g~~las~s~dg~-------i~iwd~~~~~~~~~~~-------~h~~~i~~v~~sp~g~~~~~~~~~l~las~ 467 (502)
..++++++|..++.+-..|. |-+++... .+..+. .-.+.|-+|+++++|. . +.+|+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~-------~-ia~ts 235 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGR-------L-IAVTS 235 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCC-------E-EEEEC
Confidence 99999999988777655442 44454332 222222 2345689999999997 2 33333
Q ss_pred --cCceEEEE
Q 010754 468 --IPYFLYWI 475 (502)
Q Consensus 468 --~~~~~iw~ 475 (502)
.+.+.+|+
T Consensus 236 PrGg~~~~~d 245 (305)
T PF07433_consen 236 PRGGRVAVWD 245 (305)
T ss_pred CCCCEEEEEE
Confidence 25677773
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00085 Score=69.99 Aligned_cols=135 Identities=15% Similarity=0.195 Sum_probs=100.6
Q ss_pred ecCCeEEEEEcCCCceEEEEeeccCC-eEEEEec------CCCEEEEEeCCCeEEEEEcCCCc--ceE----EEecCCCc
Q 010754 334 SCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWR------NNVSFATSSTDNMIYVCKIGENR--PIK----TFAGHQGE 400 (502)
Q Consensus 334 ~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~v~~~------~~~~~~~~~~d~~i~i~d~~~~~--~~~----~~~~h~~~ 400 (502)
.....|+-.|+.+|+.+..+..+... |.+++-. .+...++|-.++.+..||.|-.. .+. .+ .....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCC
Confidence 34678999999999999999987754 6666542 13346778889999999998643 221 11 23456
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
.+|++-+.+| +||.||.+|.||+||--..+.-..+.+-..||..|..+.||. .++|+....+.+....+
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGk--------wilaTc~tyLlLi~t~~ 648 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGK--------WILATCKTYLLLIDTLI 648 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCc--------EEEEeecceEEEEEEee
Confidence 8888888777 789999999999999432222334556788999999999997 78999998888876543
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=71.27 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=79.0
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeE-EEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
..|.-+.|+|.-.++|.+..+|.|-+..++-..+.++.-+...++ +++|.|+|+.|++|-.||+|++.|+.++..+..+
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 458899999999999999999999999998777888887777777 9999999999999999999999999999877764
Q ss_pred ee-ccCCeEEEEec
Q 010754 354 EF-HSGPTLDVDWR 366 (502)
Q Consensus 354 ~~-~~~~v~~v~~~ 366 (502)
.. -...|.++.|.
T Consensus 101 ~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 101 LFSVETDISKGIWD 114 (665)
T ss_pred ccccccchheeecc
Confidence 22 34467777775
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0042 Score=61.41 Aligned_cols=182 Identities=8% Similarity=-0.034 Sum_probs=106.3
Q ss_pred eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CCCEEEEEECCCeEEEEECCC-
Q 010754 229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLATGSYDGQARIWSTNG- 305 (502)
Q Consensus 229 ~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~s~~~dg~i~iwd~~~- 305 (502)
.++.++.+|.+..+|..+++......... ..... .......+.-+| .+..++.++.+|.+..+|...
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~--------~~~~~--~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQ--------PTGAT--EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheecccc--------CCCcc--chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 46667778888888888776432211000 00000 000000011112 245677778889999999764
Q ss_pred ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC-eEEEEecCCCEEEEEeCCCeEEEEE
Q 010754 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TLDVDWRNNVSFATSSTDNMIYVCK 384 (502)
Q Consensus 306 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~v~~~~~~~~~~~~~d~~i~i~d 384 (502)
+.+..... . ....+. ..+..++.++.+|.+..+|..+++.+......... ..... ..++.+++++.+|.++++|
T Consensus 277 ~~~W~~~~-~-~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~-v~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 277 QIVWKREY-G-SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV-LYNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEeecC-C-CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE-EECCEEEEEeCCCEEEEEE
Confidence 33333221 1 111222 24567888889999999999999876544321111 11111 1266788899999999999
Q ss_pred cCCCcceEEEecCCCcEEE-EEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 385 IGENRPIKTFAGHQGEVNC-VKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~-l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
..+++.+....-....+.+ ..+ .+..|+.++.||.|+.++.
T Consensus 352 ~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 352 REDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 9999988777644333322 222 2457888899999888764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=44.66 Aligned_cols=38 Identities=47% Similarity=0.823 Sum_probs=34.2
Q ss_pred cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 389 ~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
.++..+..|...|+++.|++.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.027 Score=52.71 Aligned_cols=59 Identities=12% Similarity=0.280 Sum_probs=42.8
Q ss_pred eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEE-eCCCcEEEEECCCCeeEEEecc
Q 010754 379 MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASC-SDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 379 ~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~-s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
.|.++|+.+++.+.++.. ..++.+|..+.+.+ +|++. ..++.|.|||..+|+.++++..
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 377788888888888763 34577899988766 55544 4589999999999999998873
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.5e-05 Score=44.94 Aligned_cols=37 Identities=43% Similarity=0.735 Sum_probs=33.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEe
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWT 243 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~ 243 (502)
.+..+.+|...|.++.|++.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.075 Score=52.98 Aligned_cols=217 Identities=14% Similarity=0.237 Sum_probs=119.7
Q ss_pred ceEEEEEcCCCCeEEEE-eCCC----cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE
Q 010754 217 EVCACAWSPAGSLLASG-SGDS----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sg-s~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s 291 (502)
.+..++++|+|++||.+ +..| +++++|+.+++.+. ..+.. .....+.|.++++.|+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~------------d~i~~------~~~~~~~W~~d~~~~~y 186 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP------------DGIEN------PKFSSVSWSDDGKGFFY 186 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE------------EEEEE------EESEEEEECTTSSEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC------------Ccccc------cccceEEEeCCCCEEEE
Confidence 34568899999988865 3333 59999999875321 01110 01234999999988776
Q ss_pred EECCC-----------eEEEEECCCce---EEEecCccCC--eEEEEEecCCCEEEEEecC----CeEEEEEcCCC----
Q 010754 292 GSYDG-----------QARIWSTNGDL---KCTLSKHKGP--IFSLKWNKKGDYLLTGSCD----KTAIVWDVKTE---- 347 (502)
Q Consensus 292 ~~~dg-----------~i~iwd~~~~~---~~~~~~~~~~--v~~l~~~~~~~~l~s~~~d----~~i~~wd~~~~---- 347 (502)
...+. .|+.|.+.... ...+...... ...+..++++++|+..+.. ..+.+.|+..+
T Consensus 187 ~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~ 266 (414)
T PF02897_consen 187 TRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPD 266 (414)
T ss_dssp EECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS
T ss_pred EEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCc
Confidence 66443 36777765321 2344443333 5688889999988754332 35788888764
Q ss_pred -ceEEEEeeccCCeEEEEecCCCEEEEE---eCCCeEEEEEcCCCcc---eEEEecCCCc--EEEEEEcCCCCEE-EEEe
Q 010754 348 -EWKQQFEFHSGPTLDVDWRNNVSFATS---STDNMIYVCKIGENRP---IKTFAGHQGE--VNCVKWDPTGSLL-ASCS 417 (502)
Q Consensus 348 -~~~~~~~~~~~~v~~v~~~~~~~~~~~---~~d~~i~i~d~~~~~~---~~~~~~h~~~--i~~l~~sp~g~~l-as~s 417 (502)
..........+....+....+..++.. ...+.|...++..... ...+..+... +..+.. .+.+| +...
T Consensus 267 ~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~ 344 (414)
T PF02897_consen 267 AKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYR 344 (414)
T ss_dssp -SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEE
T ss_pred CCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEE
Confidence 333333333344445555544444443 2346777788877653 2355556553 445544 34444 4444
Q ss_pred CCC--cEEEEECCCCeeEEEec-cCCCcEEEEEEccCCC
Q 010754 418 DDV--TAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 418 ~dg--~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~ 453 (502)
.++ .|++|++..+.....+. .-.+.|..+...+++.
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSD 383 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-S
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCC
Confidence 454 48899988344444443 2334466665555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.008 Score=58.67 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=109.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecC--ccccCCCCeEEEEECC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG--RTNEKSKDVTTLDWNG 284 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~s~ 284 (502)
+...++...++|++++.| +=-++|.|..+|.+.|.|++....+ ....+.. ........|+++.|+-
T Consensus 78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI-----------~~~~i~~~~~~~~~~~~vt~ieF~v 145 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVI-----------YNENIRESFLSKSSSSYVTSIEFSV 145 (395)
T ss_dssp EEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEE-----------EEEEGGG--T-SS----EEEEEEEE
T ss_pred chhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEE-----------eeccccccccccccccCeeEEEEEE
Confidence 345666678999999998 5458999999999999999765422 1222222 2223455688888862
Q ss_pred -----CC---CEEEEEECCCeEEEEECC----CceE----EEecCccCCeEEEE-EecC-----------------C---
Q 010754 285 -----EG---TLLATGSYDGQARIWSTN----GDLK----CTLSKHKGPIFSLK-WNKK-----------------G--- 327 (502)
Q Consensus 285 -----~g---~~l~s~~~dg~i~iwd~~----~~~~----~~~~~~~~~v~~l~-~~~~-----------------~--- 327 (502)
|+ -.+++|+..|.+.+|.+. +... .....+.++|..+. ++.+ +
T Consensus 146 m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 146 MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 33 478899999999999743 2111 12224556766665 3221 1
Q ss_pred CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec------CCCEEEEEeCCCeEEEEEcCCCcceEEEecCC---
Q 010754 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR------NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--- 398 (502)
Q Consensus 328 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~--- 398 (502)
+-++....+..++++...+.+..+......-.+..+.+. ....+++-..+|.|++|.+..-+.+..+.-..
T Consensus 226 ~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d 305 (395)
T PF08596_consen 226 PGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLD 305 (395)
T ss_dssp -EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---
T ss_pred CcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccc
Confidence 234555668899999988877665544221222333342 23447778899999999999988887776532
Q ss_pred -CcEEEEEEcCCCCEEEEEeCC
Q 010754 399 -GEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 399 -~~i~~l~~sp~g~~las~s~d 419 (502)
..+....++++|..++-.+..
T Consensus 306 ~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 306 SRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp HHHHTT-EE-TTS-EEEE-SSS
T ss_pred cccccccEECCCCCEEEEeCcc
Confidence 123456678888877666543
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0045 Score=54.50 Aligned_cols=113 Identities=12% Similarity=-0.026 Sum_probs=83.9
Q ss_pred CCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEE
Q 010754 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 406 (502)
Q Consensus 327 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~ 406 (502)
..+++.|+..+.+.-.|..+|..+..-.. ...+-+-+..-++.++.|+..|.+++.+..++..+..|..-..-=.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 35777888889999999998886654321 12222222224556899999999999999999888887654332234556
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC
Q 010754 407 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 407 sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~ 440 (502)
.+++.++..|+.|+..+.-|.++..++...+-..
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 7889999999999999999999999998876433
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.023 Score=50.28 Aligned_cols=142 Identities=14% Similarity=0.075 Sum_probs=87.6
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD 306 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~ 306 (502)
..+++.||..+.+.--|..+++....... + ..|.+-+.- -|++++.|++.|.+++.+.++.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il------------g------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tG 83 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL------------G------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTG 83 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh------------C------ceeeeeeEE-ECCEEEEEEccCcEEEEEecch
Confidence 45777888888888888777764321110 0 112211111 3678999999999999998754
Q ss_pred -eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEE
Q 010754 307 -LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCK 384 (502)
Q Consensus 307 -~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d 384 (502)
+...+.....--......+++..+..++.|++.+..|.++..++...+...+...+-+..+ +..+..+...|.+.-..
T Consensus 84 s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 84 SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVT 163 (354)
T ss_pred hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEc
Confidence 4444443322222334567899999999999999999999888877654433332223333 44455555666655444
Q ss_pred cCC
Q 010754 385 IGE 387 (502)
Q Consensus 385 ~~~ 387 (502)
...
T Consensus 164 ~~~ 166 (354)
T KOG4649|consen 164 KNP 166 (354)
T ss_pred cCC
Confidence 433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0065 Score=62.57 Aligned_cols=184 Identities=14% Similarity=0.167 Sum_probs=104.3
Q ss_pred CceEEEEEcCCCCeEEEEe------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 216 SEVCACAWSPAGSLLASGS------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
..+...+.+|+|..+|... .|..-.||-...+.... . + .. ....+.-.|+|+|..|
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~----------~---l---t~--g~~~t~PsWspDG~~l 411 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV----------Q---V---LE--GHSLTRPSWSLDADAV 411 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce----------e---e---ec--CCCCCCceECCCCCce
Confidence 4678899999998877665 35555555443221100 0 0 00 1237788899998877
Q ss_pred EEEECC------------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEE---EEcCCCce-E---
Q 010754 290 ATGSYD------------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV---WDVKTEEW-K--- 350 (502)
Q Consensus 290 ~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~---wd~~~~~~-~--- 350 (502)
++.... +.+.+.++++..... ...+.|..+.|+|+|..++... ++.|++ -....|.. +
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 776532 223333333322211 3356799999999999888765 577777 44344431 1
Q ss_pred EEEee-ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEE-ec--CCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 351 QQFEF-HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AG--HQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 351 ~~~~~-~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~--h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
..+.. ....+.++.|.++..|+++..++...+|.+.-.-...+. .+ ....+..|+-+++ .|+....+|.+
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred EEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 11222 223468899999888887766555445544322221222 32 2456777777763 34455556643
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.032 Score=54.70 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=139.3
Q ss_pred EEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC---
Q 010754 219 CACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY--- 294 (502)
Q Consensus 219 ~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~--- 294 (502)
..++.++.+. .+++...+..|.+.|....+..... .. ......++++++++.+.++..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~------------~v------G~~P~~~~~~~~~~~vYV~n~~~~ 138 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI------------PV------GLGPVGLAVDPDGKYVYVANAGNG 138 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe------------ee------ccCCceEEECCCCCEEEEEecccC
Confidence 4678888776 5555555688999996654432111 00 114678899999988877766
Q ss_pred CCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEE-E----EeeccCCeEEEEecC
Q 010754 295 DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQ-Q----FEFHSGPTLDVDWRN 367 (502)
Q Consensus 295 dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~-~----~~~~~~~v~~v~~~~ 367 (502)
++.+.+.|... ........-..+ ..++++|+|+.++.+. .++.|.+.|..+....+ . +. .......+.+.+
T Consensus 139 ~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~~~~P~~i~v~~ 216 (381)
T COG3391 139 NNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-VGTGPAGIAVDP 216 (381)
T ss_pred CceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-cCCCCceEEECC
Confidence 68888888664 333343333345 8999999999777665 68899999977665543 1 11 112234455555
Q ss_pred CCE--EEEEeCC--CeEEEEEcCCCcceEE-EecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeccCC-
Q 010754 368 NVS--FATSSTD--NMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLREHS- 440 (502)
Q Consensus 368 ~~~--~~~~~~d--~~i~i~d~~~~~~~~~-~~~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~h~- 440 (502)
++. +++...+ +.+...|..++..... +..-......+..+|+|+++..... .+.+.+-|..+......+....
T Consensus 217 ~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 217 DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 443 3333333 5888899888776654 2211114567899999999888754 4889999999888777655332
Q ss_pred --CcEEEEEEccCCC
Q 010754 441 --KEIYTIRWSPTGS 453 (502)
Q Consensus 441 --~~i~~v~~sp~g~ 453 (502)
..+..+++.+...
T Consensus 297 ~~~~~~~~~~~~~~~ 311 (381)
T COG3391 297 ALGEPVSIAISPLYD 311 (381)
T ss_pred ccccceeccceeecc
Confidence 2466777777654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0023 Score=63.05 Aligned_cols=176 Identities=16% Similarity=0.210 Sum_probs=106.4
Q ss_pred CCeEEEEECCCCCEEEEEEC---C-CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEE-EecCC--eEEEEEcCCC
Q 010754 275 KDVTTLDWNGEGTLLATGSY---D-GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDK--TAIVWDVKTE 347 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~---d-g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~--~i~~wd~~~~ 347 (502)
..+..-+|+|++..++..+. . ..+.+++++...........+.-..-+|+|+|+.|+. ...|| .|.++|+.++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 34667789999887655432 2 3588889875444433334455566789999987774 44566 4667788777
Q ss_pred ceEEEEeeccCCeEEEEecCCCE-E-EEEeCCCe--EEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-Cc-
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVS-F-ATSSTDNM--IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VT- 421 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~-~-~~~~~d~~--i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-g~- 421 (502)
...+ +....+.-..-.|+|++. + .+.+..|. |.+++...+.. ..+....+.-..-.|+|+|++|+..+.. |.
T Consensus 273 ~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 273 NLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred ccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCce
Confidence 6333 443333334556777665 3 33444444 56666665554 3333233333377899999999887753 44
Q ss_pred -EEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 422 -AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 422 -i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
|.+.|+.++.-+..+. +......-.|.|+|.
T Consensus 351 ~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 351 DIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred eeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 6666666655444443 333345667888887
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=68.44 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=76.7
Q ss_pred CCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 358 GPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 358 ~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~-~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
..+.-+.|.|.. .+|++..+|.|.++.+. .+.+.++..|...++ +++|.|||++||.|-.||+|++-|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 346778898864 57888999999999988 778888987877777 999999999999999999999999999988876
Q ss_pred ec-cCCCcEEEEEEcc
Q 010754 436 LR-EHSKEIYTIRWSP 450 (502)
Q Consensus 436 ~~-~h~~~i~~v~~sp 450 (502)
.. ....+|.++.|.|
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 32 2455788888874
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.017 Score=58.36 Aligned_cols=147 Identities=11% Similarity=0.040 Sum_probs=89.7
Q ss_pred ECCCCCEEEEE-ECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe--------------------------
Q 010754 282 WNGEGTLLATG-SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-------------------------- 334 (502)
Q Consensus 282 ~s~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-------------------------- 334 (502)
++|||+.+... -+.+.+.+.|.+...+.....-.+....+.++|+|+++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 45677655333 234677777766533221111122335566777777776654
Q ss_pred --------------cCCeEEEEEcCC----CceEEEEeeccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCCCcc----
Q 010754 335 --------------CDKTAIVWDVKT----EEWKQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENRP---- 390 (502)
Q Consensus 335 --------------~d~~i~~wd~~~----~~~~~~~~~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~~~---- 390 (502)
.++.|.+.|.++ +..+..+-.-......+.++|++. ++++..+.++.|+|+.+.+.
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 124577777766 222222222344556777888766 45556789999999987553
Q ss_pred --------eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 391 --------IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 391 --------~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
+....- .......+|+++|+...|.--|..|..||+.+
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 222222 22344678999999888888899999999876
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0036 Score=65.44 Aligned_cols=142 Identities=8% Similarity=0.036 Sum_probs=97.0
Q ss_pred CCCEEEEE-ECCCeEEEEECC-CceEEEecCccCC-eEEEEEec-----CCCEEEEEecCCeEEEEEcCCCc--eEEE-E
Q 010754 285 EGTLLATG-SYDGQARIWSTN-GDLKCTLSKHKGP-IFSLKWNK-----KGDYLLTGSCDKTAIVWDVKTEE--WKQQ-F 353 (502)
Q Consensus 285 ~g~~l~s~-~~dg~i~iwd~~-~~~~~~~~~~~~~-v~~l~~~~-----~~~~l~s~~~d~~i~~wd~~~~~--~~~~-~ 353 (502)
+.++|+.- .....|+-.|++ |+.+.....+... |..++-.. +....+.|-.++.+..||.|-.. ++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 344678888876 6677777766543 55553221 13356677889999999998643 2211 1
Q ss_pred --eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 354 --EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 354 --~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
........+++-..++.+|+|+.+|.||+||--..+.-..+.+-..+|.+|..+.||++|++.+.. .|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 113345678888899999999999999999954444444566778999999999999998766644 6777774
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.025 Score=54.95 Aligned_cols=210 Identities=14% Similarity=0.213 Sum_probs=113.7
Q ss_pred cCCCCeEEEEe---------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 224 SPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 224 ~p~~~~l~sgs---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
|||+++++... ..+.+.|||+.+++... +... ...+....|||+|+.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------l~~~----~~~~~~~~~sP~g~~~~~v~- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------LTPP----PPKLQDAKWSPDGKYIAFVR- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------SS-E----ETTBSEEEE-SSSTEEEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------CcCC----ccccccceeecCCCeeEEEe-
Confidence 57777666532 23678889988864311 1000 34688999999999998887
Q ss_pred CCeEEEEECCCceEEEecCc------------------cCCeEEEEEecCCCEEEEEecC-Ce-----------------
Q 010754 295 DGQARIWSTNGDLKCTLSKH------------------KGPIFSLKWNKKGDYLLTGSCD-KT----------------- 338 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l~s~~~d-~~----------------- 338 (502)
++.|.+++..+.....+... -+.-..+-|||+|++|+....| ..
T Consensus 62 ~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp 141 (353)
T PF00930_consen 62 DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYP 141 (353)
T ss_dssp TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-
T ss_pred cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCC
Confidence 58899998754433322211 1223578899999999876544 22
Q ss_pred ------------------EEEEEcCCCceEEE-Ee----eccCCeEEEEecCCCE-EEEEeCC-----CeEEEEEcCCCc
Q 010754 339 ------------------AIVWDVKTEEWKQQ-FE----FHSGPTLDVDWRNNVS-FATSSTD-----NMIYVCKIGENR 389 (502)
Q Consensus 339 ------------------i~~wd~~~~~~~~~-~~----~~~~~v~~v~~~~~~~-~~~~~~d-----~~i~i~d~~~~~ 389 (502)
+.++|+.+++.... .. ....-+..+.|.+++. |+..-.+ ..+.++|..++.
T Consensus 142 ~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 142 EVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE 221 (353)
T ss_dssp EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred cccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc
Confidence 23334433332110 00 1122366778876665 5544322 246777887765
Q ss_pred ceEEEec-CCCcE---EEEEEc-CCCC-EEEEEeCCCc--EEEEECCCCeeEEEeccCCCcEEE-EEEccCCC
Q 010754 390 PIKTFAG-HQGEV---NCVKWD-PTGS-LLASCSDDVT--AKIWNMKQDKYVHDLREHSKEIYT-IRWSPTGS 453 (502)
Q Consensus 390 ~~~~~~~-h~~~i---~~l~~s-p~g~-~las~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~-v~~sp~g~ 453 (502)
....+.. ..+.| ..+.|. +++. +|.....||. |.+.+...+. ...+....-.|.. +.|++++.
T Consensus 222 ~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~ 293 (353)
T PF00930_consen 222 TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNN 293 (353)
T ss_dssp CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSS
T ss_pred eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCC
Confidence 4333322 12222 244554 5554 4555556775 4555555555 3455544555755 67888876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.015 Score=44.80 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=70.2
Q ss_pred eEEEEEec---CC-CEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEE
Q 010754 318 IFSLKWNK---KG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393 (502)
Q Consensus 318 v~~l~~~~---~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 393 (502)
|++|++.. +| +.|++|+.|..|++|+- ...+..+. ....+..++......|+.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeee
Confidence 56677654 33 68999999999999974 35566555 4556888888888999999999999999753 23344
Q ss_pred EecCCCcEEEEEEcC-CC---CEEEEEeCCCcEE
Q 010754 394 FAGHQGEVNCVKWDP-TG---SLLASCSDDVTAK 423 (502)
Q Consensus 394 ~~~h~~~i~~l~~sp-~g---~~las~s~dg~i~ 423 (502)
.+. ...++++.+.. ++ .-|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 442 33466666543 32 2588888888764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00091 Score=67.93 Aligned_cols=109 Identities=20% Similarity=0.299 Sum_probs=84.0
Q ss_pred eEEEEECCCCCEEEEEEC----CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE
Q 010754 277 VTTLDWNGEGTLLATGSY----DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 352 (502)
-+-.+|+|...++++++. .|.|.||--.|...... ...-.++++||+|..-.|+.|=.-|.+.+|...+.+.-..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 345579999999999875 48999996555432211 1122356799999887888888889999999887776666
Q ss_pred EeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 010754 353 FEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIG 386 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~ 386 (502)
...|..++..+.|+++ +.++++..-|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 7779999999999775 568888888999999876
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0061 Score=46.83 Aligned_cols=99 Identities=14% Similarity=0.146 Sum_probs=65.8
Q ss_pred eEEEEECC---CC-CEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE
Q 010754 277 VTTLDWNG---EG-TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 277 v~~l~~s~---~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 352 (502)
|++|++.. +| +.|++|+.|..|++|+-+ ..+..+. -.+.|.+|+-... ..|+.+..+|+|-+|+-... +..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce--eee
Confidence 55666544 33 589999999999999754 3333333 3466788876665 67999999999999985333 333
Q ss_pred EeeccCCeEEEEecCCC-----EEEEEeCCCeEE
Q 010754 353 FEFHSGPTLDVDWRNNV-----SFATSSTDNMIY 381 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~~-----~~~~~~~d~~i~ 381 (502)
.+ .+..+.++.+.+-. .+++|-.+|.|-
T Consensus 77 iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33 23335666553322 588998888874
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.16 Score=49.70 Aligned_cols=98 Identities=23% Similarity=0.379 Sum_probs=62.5
Q ss_pred EEEEcCCCCeEEEEeCCCcEEE---EecCCCCccCCCCCCCceeEEEeeecCcccc-CCCCeEEEEEC-----------C
Q 010754 220 ACAWSPAGSLLASGSGDSTARI---WTIADGTSNGGAQNGPLNVLVLKHVKGRTNE-KSKDVTTLDWN-----------G 284 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~dg~v~i---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~s-----------~ 284 (502)
.++.+|++.+||.+..+..+.+ |+....... ...+... ..+.... ....|+++.|- +
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~-------~~~~~~~-~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~ 77 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGEN-------ENTYSIS-WSGPLDDEPGECITSILCLPLSSQKRSTGGP 77 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCC-------CCeEEEE-eeeeccCCCCCEEEEEEEEEeecccccCCCC
Confidence 5688899999999987766655 543221100 0011111 1111111 11456666653 3
Q ss_pred CCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEec
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK 325 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~ 325 (502)
|...+++|..+|.|++|...|.++..-.-|..+|..|+...
T Consensus 78 dw~~I~VG~ssG~vrfyte~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 78 DWTCIAVGTSSGYVRFYTENGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CcEEEEEEecccEEEEEeccchHHHHHhcCccceEEEEecc
Confidence 46789999999999999999888777777899999998853
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.08 Score=49.40 Aligned_cols=146 Identities=13% Similarity=0.058 Sum_probs=93.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE----------
Q 010754 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---------- 353 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---------- 353 (502)
..++.|+.|+.+| +.+++...........+...|..+...|+-+.|++-+ |+.++++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3578899999988 8899883222222222334499999999877776654 599999998765433311
Q ss_pred ----eeccCCeEEEE---ecCCCEEEEEeCCCeEEEEEcCCC-----cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCc
Q 010754 354 ----EFHSGPTLDVD---WRNNVSFATSSTDNMIYVCKIGEN-----RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421 (502)
Q Consensus 354 ----~~~~~~v~~v~---~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~ 421 (502)
......+...+ ...+...++.....+|.+|..... +..+.+. -...+..++|. ++.|+.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~- 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG- 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-
Confidence 01122333344 223444555666668888887653 3455555 34778899998 56777777654
Q ss_pred EEEEECCCCeeEEE
Q 010754 422 AKIWNMKQDKYVHD 435 (502)
Q Consensus 422 i~iwd~~~~~~~~~ 435 (502)
..+.|+.++.....
T Consensus 159 f~~idl~~~~~~~l 172 (275)
T PF00780_consen 159 FYLIDLNTGSPSEL 172 (275)
T ss_pred eEEEecCCCCceEE
Confidence 88899987765433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0037 Score=65.48 Aligned_cols=101 Identities=17% Similarity=0.374 Sum_probs=69.9
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 305 (502)
.+..++.|+..|.+-..|+...-. .+ ........+|++++|+.+|..++.|-.+|.|.+||...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~---------------~~-~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG---------------PL-HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc---------------hh-hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 355688888888888877654210 00 01112246899999999999999999999999999875
Q ss_pred -ceEEEecCccCCeEEE---EEecCCCEEEEEecCCeEEEEEc
Q 010754 306 -DLKCTLSKHKGPIFSL---KWNKKGDYLLTGSCDKTAIVWDV 344 (502)
Q Consensus 306 -~~~~~~~~~~~~v~~l---~~~~~~~~l~s~~~d~~i~~wd~ 344 (502)
+....+..|..+..++ .|..++..++++...|. +|.+
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6666666666554444 44455667888887776 5544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.14 Score=50.28 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=120.7
Q ss_pred CeEEEEECCCCCEEEEE-ECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec---CCeEEEEEcCCCceEE
Q 010754 276 DVTTLDWNGEGTLLATG-SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~ 351 (502)
.-..++.++.+..++.. ..++.|.+.|...........-......++++|+++.+.++.. ++++.+.|-.+++...
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~ 154 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA 154 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence 34577888888855444 4558999999665444433333336688999999988887666 6899999999998888
Q ss_pred EEeeccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCCCcceE-E---EecCCCcEEEEEEcCCCCEEEEEeCC---CcE
Q 010754 352 QFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENRPIK-T---FAGHQGEVNCVKWDPTGSLLASCSDD---VTA 422 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~-~---~~~h~~~i~~l~~sp~g~~las~s~d---g~i 422 (502)
.......+ ..+.+.+++. +++-..++.|.+.|........ . ...-......+.++|+|.++...... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 75544444 7788877655 3444578999999976654442 1 01122334578999999966554443 689
Q ss_pred EEEECCCCeeEEEeccCCC-cEEEEEEccCCC
Q 010754 423 KIWNMKQDKYVHDLREHSK-EIYTIRWSPTGS 453 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~-~i~~v~~sp~g~ 453 (502)
...|..++.....-..-.. .-..+..+|+|.
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~ 265 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGK 265 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence 9999998887665221222 456789999998
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.018 Score=58.27 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=83.5
Q ss_pred CCCCCEEEEEECCCeEEEEECCC-----ceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCce-------
Q 010754 283 NGEGTLLATGSYDGQARIWSTNG-----DLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEW------- 349 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~------- 349 (502)
.++|++...+ ++.|.+.|... .....+..-......+.++|+|+++++++ .+.+|.+.|+.+.+.
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 4578776653 57899999765 33343334455668999999999888655 489999999987542
Q ss_pred -----EEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCC----------CcceEEEecCCCc-----EEEEEEcC
Q 010754 350 -----KQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGE----------NRPIKTFAGHQGE-----VNCVKWDP 408 (502)
Q Consensus 350 -----~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~----------~~~~~~~~~h~~~-----i~~l~~sp 408 (502)
........ ......|.++ ..+.+-..|..|..|++.. ...+.++.-|-.+ ..+=.-.|
T Consensus 363 ~~~~vvaevevGl-GPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~ 441 (635)
T PRK02888 363 PRDAVVAEPELGL-GPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEA 441 (635)
T ss_pred ccceEEEeeccCC-CcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCC
Confidence 33333322 2345566555 4566778899999999876 2334444333221 11112357
Q ss_pred CCCEEEEEe
Q 010754 409 TGSLLASCS 417 (502)
Q Consensus 409 ~g~~las~s 417 (502)
+|++|++..
T Consensus 442 dgk~l~~~n 450 (635)
T PRK02888 442 DGKWLVSLN 450 (635)
T ss_pred CCCEEEEcc
Confidence 788877764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.16 Score=51.64 Aligned_cols=128 Identities=8% Similarity=0.037 Sum_probs=81.5
Q ss_pred EEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEE-----------------EeCCCeEEEEEcCCCcce
Q 010754 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFAT-----------------SSTDNMIYVCKIGENRPI 391 (502)
Q Consensus 329 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~-----------------~~~d~~i~i~d~~~~~~~ 391 (502)
.+++++.+|.+...|..+|+.+....... ..+...++..++. ...+|.+.-+|+.+++.+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~ 379 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVV 379 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEe
Confidence 57788899999999999999887665321 1122333222221 124678889999999887
Q ss_pred EEEecCC--------CcE--EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE--EEEEccCCCCCCCCC
Q 010754 392 KTFAGHQ--------GEV--NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY--TIRWSPTGSGTNNPN 459 (502)
Q Consensus 392 ~~~~~h~--------~~i--~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~--~v~~sp~g~~~~~~~ 459 (502)
.+..... .+. ..+.. .+.+|+.++.||.|+.+|..+|+.+.+++. ...+. -+.+..+|.
T Consensus 380 W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~------ 450 (488)
T cd00216 380 WEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGK------ 450 (488)
T ss_pred eEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCE------
Confidence 7665321 111 11222 467888999999999999999999988763 22222 233444553
Q ss_pred ccEEEEeecCc
Q 010754 460 QQLILARLIPY 470 (502)
Q Consensus 460 ~~l~las~~~~ 470 (502)
+++++.++.
T Consensus 451 --~yv~~~~g~ 459 (488)
T cd00216 451 --QYVGVMVGG 459 (488)
T ss_pred --EEEEEEecC
Confidence 566666554
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.047 Score=53.22 Aligned_cols=142 Identities=10% Similarity=0.047 Sum_probs=94.6
Q ss_pred CCCCEEE-EEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCC-------EEEEEecCCeEEEEEcCCCce--EEE
Q 010754 284 GEGTLLA-TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-------YLLTGSCDKTAIVWDVKTEEW--KQQ 352 (502)
Q Consensus 284 ~~g~~l~-s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~-------~l~s~~~d~~i~~wd~~~~~~--~~~ 352 (502)
.+.++|+ ++..-..++-.|++ |+.+....-+.. |.-+.+.|+.+ .-+.|-.|..|.-||.+-... +..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3444444 34444566666765 566666666655 67777777543 234567789999999974322 111
Q ss_pred Eee----ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 353 FEF----HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 353 ~~~----~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
... ......|.+-..++.+++|+.+|.|++||--..+.-..+++-..+|..|..+.+|++|+..+. ..+.+-++
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 111 122345666677899999999999999998433444557888899999999999999866554 46666664
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.11 Score=49.66 Aligned_cols=182 Identities=14% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCeEEEEeC----------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 227 GSLLASGSG----------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 227 ~~~l~sgs~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
..+|+.|.. .|.|.++++.+... ....++... .....++|++++-- +| .|++|. ++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~---------~~~~l~~i~--~~~~~g~V~ai~~~-~~-~lv~~~-g~ 107 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE---------NNFKLKLIH--STEVKGPVTAICSF-NG-RLVVAV-GN 107 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------------EEEEEE--EEEESS-EEEEEEE-TT-EEEEEE-TT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccc---------cceEEEEEE--EEeecCcceEhhhh-CC-EEEEee-cC
Confidence 457777753 28899999987410 000111111 11124678988765 33 455544 48
Q ss_pred eEEEEECCCce-EEEecCccC--CeEEEEEecCCCEEEEEecCCeEEEEEcCC-CceEEEEee--ccCCeEEEEec-CCC
Q 010754 297 QARIWSTNGDL-KCTLSKHKG--PIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEF--HSGPTLDVDWR-NNV 369 (502)
Q Consensus 297 ~i~iwd~~~~~-~~~~~~~~~--~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~--~~~~v~~v~~~-~~~ 369 (502)
.|.+|++.... ......+.. .+.++.. .++++++|+....+.++..+. ...+..+.. ....++++.+. .+.
T Consensus 108 ~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 108 KLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED 185 (321)
T ss_dssp EEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS
T ss_pred EEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc
Confidence 99999977554 443333333 4555554 467999999988888875543 222333332 33457888886 445
Q ss_pred EEEEEeCCCeEEEEEcCCC-------c--c--eEEEecCCCcEEEE---EEcC--CCC------EEEEEeCCCcEEEE
Q 010754 370 SFATSSTDNMIYVCKIGEN-------R--P--IKTFAGHQGEVNCV---KWDP--TGS------LLASCSDDVTAKIW 425 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~-------~--~--~~~~~~h~~~i~~l---~~sp--~g~------~las~s~dg~i~iw 425 (502)
.++++..+|.+.++..... . . +..+. ....|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 8999999999999887631 1 1 22222 24567777 5555 222 47778888888733
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.016 Score=56.38 Aligned_cols=140 Identities=14% Similarity=0.206 Sum_probs=99.0
Q ss_pred CCCEEE-EEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE--------EEEEeCCCeEEEEEcCCCc--ceEEE
Q 010754 326 KGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS--------FATSSTDNMIYVCKIGENR--PIKTF 394 (502)
Q Consensus 326 ~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--------~~~~~~d~~i~i~d~~~~~--~~~~~ 394 (502)
+.+.|+ ++.....++-.|+..|+.+.....+.. |.-+.+.|+.. -++|-.+..|.-||.+-.. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344443 555667899999999999999988776 55556655433 3567788899999987432 22222
Q ss_pred ecC----CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC
Q 010754 395 AGH----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP 469 (502)
Q Consensus 395 ~~h----~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~ 469 (502)
.+| .....|.+-..+| +++.||.+|.||+||- .+.. -..+.+-..+|..|..+.+|. .++|+.+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGK--------wil~Tc~t 492 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGK--------WILATCKT 492 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCc--------EEEEeccc
Confidence 333 2346666666555 8899999999999996 4433 345567888999999999997 68888887
Q ss_pred ceEEEEe
Q 010754 470 YFLYWIC 476 (502)
Q Consensus 470 ~~~iw~~ 476 (502)
.+.+-..
T Consensus 493 yLlLi~t 499 (644)
T KOG2395|consen 493 YLLLIDT 499 (644)
T ss_pred EEEEEEE
Confidence 7666543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.028 Score=58.03 Aligned_cols=170 Identities=14% Similarity=0.179 Sum_probs=97.0
Q ss_pred CCeEEEEECCCCCEEEEEE------CCC--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC----------
Q 010754 275 KDVTTLDWNGEGTLLATGS------YDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---------- 336 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---------- 336 (502)
..+...+++|+|+.++... .|+ .|.+++..+.....+.+. ....-.|+|+|..|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3578999999999887765 243 455555544443333322 37888999998877776532
Q ss_pred --CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEE---EEcCCCcc-e---EEE-ecCCCcEEEEEE
Q 010754 337 --KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYV---CKIGENRP-I---KTF-AGHQGEVNCVKW 406 (502)
Q Consensus 337 --~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i---~d~~~~~~-~---~~~-~~h~~~i~~l~~ 406 (502)
+.+.+.++..+.... .....|..+.|++++.-+..-.++.|++ -....+.. + ..+ .+-...+..+.|
T Consensus 428 ~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 428 ATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 233333444333222 2345799999998876333333578877 44334431 1 112 223344688999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCC-CeeEEEecc--CCCcEEEEEEcc
Q 010754 407 DPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLRE--HSKEIYTIRWSP 450 (502)
Q Consensus 407 sp~g~~las~s~dg~i~iwd~~~-~~~~~~~~~--h~~~i~~v~~sp 450 (502)
..++.++ .+..++...+|.+.- |.....+.. ...++.+|+=++
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 9999865 555555455565432 221111122 245677777776
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.23 Score=44.82 Aligned_cols=230 Identities=12% Similarity=0.121 Sum_probs=128.0
Q ss_pred EEEEEcCC-CCeEEEEeCCCc-EEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC-
Q 010754 219 CACAWSPA-GSLLASGSGDST-ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD- 295 (502)
Q Consensus 219 ~~~~~~p~-~~~l~sgs~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d- 295 (502)
..++|+|. ..-++.+-.-|+ ..++|........ ........++.+| =.|||||.+|+..-.|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv---------~~~s~~~RHfyGH------Gvfs~dG~~LYATEndf 135 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV---------TLVSQEGRHFYGH------GVFSPDGRLLYATENDF 135 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcE---------EEecccCceeecc------cccCCCCcEEEeecCCC
Confidence 35777875 445666655554 5678877655321 1111112233333 2589999999876544
Q ss_pred ----CeEEEEECCCc--eEEEecCccCCeEEEEEecCCCEEEEEecC------------------CeEEEEEcCCCceEE
Q 010754 296 ----GQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCD------------------KTAIVWDVKTEEWKQ 351 (502)
Q Consensus 296 ----g~i~iwd~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------------------~~i~~wd~~~~~~~~ 351 (502)
|.|-|||.+.. .+-.+..|.-.-..+.|.+||+.++.+... -++.+.|..+|..+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 78999998743 344667777777889999999988876421 134444545555443
Q ss_pred EEee----ccCCeEEEEecCCCEEEEEeC------CCeEEEEEcCCCcceEEEec-------CCCcEEEEEEcCCCCEEE
Q 010754 352 QFEF----HSGPTLDVDWRNNVSFATSST------DNMIYVCKIGENRPIKTFAG-------HQGEVNCVKWDPTGSLLA 414 (502)
Q Consensus 352 ~~~~----~~~~v~~v~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~-------h~~~i~~l~~sp~g~~la 414 (502)
+... +.-.+..++..+++.+..++. |---.+--...++++.-+.- ....|-+|+.+.+..+++
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 3221 223455566555555555432 11111112223344433321 124577888887666666
Q ss_pred EEeC-CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 415 SCSD-DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 415 s~s~-dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
..|- .+...|||..+|..+..-.-. .+..++--.. -+...|.++.+.++
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~~~~---------gf~vssg~G~~~~~ 345 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAAAKG---------GFAVSSGQGRIIFY 345 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEeccccc--ccccceeccC---------ceEEecCCceEEec
Confidence 5555 456789999999876543211 1222222222 34666666666554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.003 Score=66.16 Aligned_cols=96 Identities=24% Similarity=0.394 Sum_probs=74.7
Q ss_pred CCCEEEEEECCCeEEEEECCCceE--EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLK--CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
.+..++.|+..|.|-..|..+... ..-....++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 345788899899999999887644 222334689999999999999999999999999999999999998888777655
Q ss_pred EEe---cC-CCEEEEEeCCCeE
Q 010754 363 VDW---RN-NVSFATSSTDNMI 380 (502)
Q Consensus 363 v~~---~~-~~~~~~~~~d~~i 380 (502)
+-+ .. +..++++...|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCce
Confidence 543 33 4446777666653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.27 Score=44.58 Aligned_cols=181 Identities=13% Similarity=0.076 Sum_probs=110.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCC--cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 217 EVCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
-...+.|..+|.++-+.+.-| .|+.+|+.+++.... ..+.... ---.++.. ++++....-.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-----------~~l~~~~-----FgEGit~~-~d~l~qLTWk 108 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQS-----------VPLPPRY-----FGEGITIL-GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEE-----------EE-TTT-------EEEEEEE-TTEEEEEESS
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEE-----------EECCccc-----cceeEEEE-CCEEEEEEec
Confidence 356788877888888887655 799999998764221 1111111 11122222 2233444446
Q ss_pred CCeEEEEECCCc-eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC-----CeEEEEecCC
Q 010754 295 DGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNN 368 (502)
Q Consensus 295 dg~i~iwd~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~v~~~~~ 368 (502)
++...+||.+.- .+..+ ...+.=+.|+ .+++.|+.+.....+.++|..+.+..+.+..... .+..+.|..+
T Consensus 109 ~~~~f~yd~~tl~~~~~~-~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G 185 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTF-PYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYING 185 (264)
T ss_dssp SSEEEEEETTTTEEEEEE-E-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETT
T ss_pred CCeEEEEccccceEEEEE-ecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcC
Confidence 789999998753 33333 3345567887 4577788777788999999988887777654322 4666788877
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEec------------C---CCcEEEEEEcCCCCEEEEEe
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAG------------H---QGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~------------h---~~~i~~l~~sp~g~~las~s 417 (502)
..++=.-....|...|..+|+.+..+.- + .+-.+.|+|+|....|...+
T Consensus 186 ~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6677667788888999999988776631 1 24588999998766554443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.13 Score=44.99 Aligned_cols=144 Identities=13% Similarity=0.213 Sum_probs=90.7
Q ss_pred CCeEEEEECCCCCEEEEEECC---------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEE-EecCCeEEEEE-
Q 010754 275 KDVTTLDWNGEGTLLATGSYD---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWD- 343 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~i~~wd- 343 (502)
.....-..+|+|++++-.-.| |.++.|-...+...... .-.--..++|+.+.+.+.. -+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~-~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN-CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeeh-hccCCccccccccCcEEEEEccCceEEeeeec
Confidence 345566678999984432222 45555544433322222 2223356788877665554 34455676666
Q ss_pred -cCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 344 -VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 344 -~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
..+|... +.=.++|++..++...... -.++...+|++.+++-..|+|
T Consensus 188 d~~tG~~s---------------------------nr~~i~dlrk~~~~e~~~P-----DGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 188 DCPTGDLS---------------------------NRKVIFDLRKSQPFESLEP-----DGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred CCCccccc---------------------------CcceeEEeccCCCcCCCCC-----CcceEccCCcEEEEEecCcEE
Confidence 4444321 2224677777655433321 234456689999898889999
Q ss_pred EEEECCCCeeEEEeccCCCcEEEEEEccC
Q 010754 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~ 451 (502)
...|..+|+.+.+++-.+..|++++|---
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 99999999999999988889999999644
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.35 Score=45.53 Aligned_cols=142 Identities=8% Similarity=-0.011 Sum_probs=88.1
Q ss_pred CCeEEEEECCCCCEEEEEEC-----------CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC-CeEEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSY-----------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-KTAIVW 342 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~~i~~w 342 (502)
...+.+...|+|.+.++... -|.|+.++..+.....+..+-..-+.|+|||+++.|+.+... +.|.-|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 34567778888887766544 144555555556666666656666899999999888887664 778888
Q ss_pred EcCC--Cce-----EEEEeeccCCeEEEEecCCCEEE-EEeCCC-eEEEEEcCCCcceEEEecCCCcEEEEEEcC-CCCE
Q 010754 343 DVKT--EEW-----KQQFEFHSGPTLDVDWRNNVSFA-TSSTDN-MIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSL 412 (502)
Q Consensus 343 d~~~--~~~-----~~~~~~~~~~v~~v~~~~~~~~~-~~~~d~-~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp-~g~~ 412 (502)
++.. +.. ...+....+..-.++...++.+. ++..+| .|.+|+.. ++.+..+.-....+++++|-- +.+.
T Consensus 191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~ 269 (307)
T COG3386 191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNT 269 (307)
T ss_pred ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCE
Confidence 7752 111 11111122333344443444444 444443 89999988 888888887767788888853 3444
Q ss_pred EEEEe
Q 010754 413 LASCS 417 (502)
Q Consensus 413 las~s 417 (502)
|...+
T Consensus 270 L~iTs 274 (307)
T COG3386 270 LYITS 274 (307)
T ss_pred EEEEe
Confidence 44433
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0033 Score=54.49 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCEEEEEecCCeEEEEEcCCCc-eEEEEeeccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCcceEEEecCC-CcEE
Q 010754 327 GDYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVN 402 (502)
Q Consensus 327 ~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-~~i~ 402 (502)
+..+++|+.+|.|.+|...... ....+.....++.++.... +....+++.+|.|+.|++..++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 4679999999999999876211 1111112222333333322 2367888999999999999998888887787 5666
Q ss_pred EEEEcCCCCEEEEE--eCCCcEEEEECCC
Q 010754 403 CVKWDPTGSLLASC--SDDVTAKIWNMKQ 429 (502)
Q Consensus 403 ~l~~sp~g~~las~--s~dg~i~iwd~~~ 429 (502)
....+..+++|+++ |.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 66666677777777 7777888888754
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.3 Score=45.99 Aligned_cols=207 Identities=12% Similarity=0.069 Sum_probs=121.2
Q ss_pred EEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 010754 221 CAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 299 (502)
Q Consensus 221 ~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~ 299 (502)
-.|.++.. ++.+--..+.|.-|+..++... .+. ....+.++..-..+..|+++.. -+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-----------~~~--------~p~~~~~~~~~d~~g~Lv~~~~--g~~ 88 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-----------VFP--------SPGGFSSGALIDAGGRLIACEH--GVR 88 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-----------EEE--------CCCCcccceeecCCCeEEEEcc--ccE
Confidence 35777655 5555556677888887655321 110 1122344444444445555443 345
Q ss_pred EEECC-CceEEEecC-----ccCCeEEEEEecCCCEEEEEec-----------CCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 300 IWSTN-GDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSC-----------DKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 300 iwd~~-~~~~~~~~~-----~~~~v~~l~~~~~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
+++.+ +..+..+.. .....+.+...|+|.+.++... -|.|+.+|. .+..++.+..+-...+.
T Consensus 89 ~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NG 167 (307)
T COG3386 89 LLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNG 167 (307)
T ss_pred EEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCc
Confidence 55544 222122211 1134567788899887665433 133444443 56666666555666788
Q ss_pred EEecCCC-EEEEE-eCCCeEEEEEcCC--C----cc-eEEEecCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCee
Q 010754 363 VDWRNNV-SFATS-STDNMIYVCKIGE--N----RP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKY 432 (502)
Q Consensus 363 v~~~~~~-~~~~~-~~d~~i~i~d~~~--~----~~-~~~~~~h~~~i~~l~~sp~g~~las~s~dg-~i~iwd~~~~~~ 432 (502)
++|+|++ .++.+ +..+.|+-|++.. + +. ...+....+..-.++...+|.+.+++-.+| .|.+|+.. +++
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l 246 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL 246 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE
Confidence 9999987 44444 4558888887752 1 11 112222345666788888998886555554 89999988 999
Q ss_pred EEEeccCCCcEEEEEEcc
Q 010754 433 VHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp 450 (502)
+..+......+++++|--
T Consensus 247 ~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 247 LGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEEECCCCCCccceEeC
Confidence 988886667788888854
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.42 Score=48.70 Aligned_cols=196 Identities=10% Similarity=0.060 Sum_probs=112.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE--EEEECCCCCEEEEEECCCeEEEEECC
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT--TLDWNGEGTLLATGSYDGQARIWSTN 304 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~l~~s~~g~~l~s~~~dg~i~iwd~~ 304 (502)
+..++.++.++.+.-.|..+++..-........ ......+. .+... ++..++.++.+|.|.-+|.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~-----------~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPA-----------DRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAE 128 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCc-----------cccccccccCCcEEc-cCCeEEEecCCCeEEEEECC
Confidence 445667777899999999888754332211100 00000000 11111 22577888889999999976
Q ss_pred -CceEEEecCccCC-----e-EEEEEecCCCEEEEEe---------cCCeEEEEEcCCCceEEEEeeccCCe--------
Q 010754 305 -GDLKCTLSKHKGP-----I-FSLKWNKKGDYLLTGS---------CDKTAIVWDVKTEEWKQQFEFHSGPT-------- 360 (502)
Q Consensus 305 -~~~~~~~~~~~~~-----v-~~l~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~~v-------- 360 (502)
++.+..+...... + .+..+. +..++.++ .++.+..+|..+|+.+..+.......
T Consensus 129 TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 129 TGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred CCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 5555554432210 1 111122 24455543 36889999999999888776532110
Q ss_pred -------------EEEEec-CCCEEEEEeCCC------------------eEEEEEcCCCcceEEEecCCCcE------E
Q 010754 361 -------------LDVDWR-NNVSFATSSTDN------------------MIYVCKIGENRPIKTFAGHQGEV------N 402 (502)
Q Consensus 361 -------------~~v~~~-~~~~~~~~~~d~------------------~i~i~d~~~~~~~~~~~~h~~~i------~ 402 (502)
...... ..+.++.++.++ .|.-+|..+++.+..+..-.... .
T Consensus 207 ~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s 286 (488)
T cd00216 207 DRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN 286 (488)
T ss_pred CcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC
Confidence 011111 245667776554 79999999999887764211111 0
Q ss_pred EEEEc----CCCC---EEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 403 CVKWD----PTGS---LLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 403 ~l~~s----p~g~---~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
...+. -+|. +++.++.+|.+...|..+|+.+...
T Consensus 287 ~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 287 QPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 01111 1343 6788889999999999999987654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.44 Score=45.70 Aligned_cols=173 Identities=17% Similarity=0.246 Sum_probs=89.6
Q ss_pred EEECCCCCEEEEEE-CCC--eEEEEECCCceEEEecCccC-CeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee
Q 010754 280 LDWNGEGTLLATGS-YDG--QARIWSTNGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 280 l~~s~~g~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 355 (502)
=+|.++|+.|+.++ .+| .+.+.|+.+..+..+....+ ......++|+++.++-......|+-.|+.+.+....+..
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 35788997666555 455 56666788877777766542 234567789888887666677999999999887666666
Q ss_pred ccCCeEEEEec--CCCEEEEEe-----------------------CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC
Q 010754 356 HSGPTLDVDWR--NNVSFATSS-----------------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 410 (502)
Q Consensus 356 ~~~~v~~v~~~--~~~~~~~~~-----------------------~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g 410 (502)
....+-...|. .+...+++. ....|.-.|+.+++.-..+. -...+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 55555445552 233333321 12346666777776544444 55678899999975
Q ss_pred CEE-EEEeC---CCc-EEEEECCC-CeeEEEeccCC--CcEEEEEEccCCC
Q 010754 411 SLL-ASCSD---DVT-AKIWNMKQ-DKYVHDLREHS--KEIYTIRWSPTGS 453 (502)
Q Consensus 411 ~~l-as~s~---dg~-i~iwd~~~-~~~~~~~~~h~--~~i~~v~~sp~g~ 453 (502)
.-+ +-|-+ +.. -|||-+++ +.-...+..+. ..+..=-|.|||.
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 544 44443 222 37786643 23333333332 2345556888887
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.04 Score=56.89 Aligned_cols=153 Identities=14% Similarity=0.189 Sum_probs=86.0
Q ss_pred CCCEEEEEECCC-----eEEEEECCCceEEEecCccCCeE--EEEEecCCCEEEEEecC---------------------
Q 010754 285 EGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPIF--SLKWNKKGDYLLTGSCD--------------------- 336 (502)
Q Consensus 285 ~g~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~v~--~l~~~~~~~~l~s~~~d--------------------- 336 (502)
+|++.+.||.++ .+..||..............+.. +++ .-+|...+.|+.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCccccccccccccccccccccc
Confidence 577778888764 47889977655444333222211 111 1256666667654
Q ss_pred --CeEEEEEcCCCceEEEEeeccC-CeEEEEecCCCEEEEEeCC------CeEEEEEcCC-Cc--ceEEEecCCCcEEEE
Q 010754 337 --KTAIVWDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSSTD------NMIYVCKIGE-NR--PIKTFAGHQGEVNCV 404 (502)
Q Consensus 337 --~~i~~wd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~d------~~i~i~d~~~-~~--~~~~~~~h~~~i~~l 404 (502)
..+..||..+.++...-..... .-.+++...+..++.|+.+ ..+..||..+ ++ .+..+.........+
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 2477888887766432221111 1122334456667777654 2467888876 43 333343333333333
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEeccCC
Q 010754 405 KWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 405 ~~sp~g~~las~s~dg--~i~iwd~~~~~~~~~~~~h~ 440 (502)
.+ +|++.+.|+.|| ++..||..+.+....-..|+
T Consensus 510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 510 LH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred EE--CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 33 688889999888 78888888776554433443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0065 Score=38.98 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=30.1
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECCCce
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~ 307 (502)
...|.+++|+|...+||.|+.+|.|.+|.+++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3469999999999999999999999999986554
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.76 Score=44.60 Aligned_cols=194 Identities=10% Similarity=0.120 Sum_probs=92.8
Q ss_pred CCeEEEEe-CCCcEEEEecCCCCccCCCCCCCceeEEEeeecC---ccccCCCCeEEEEECCCCCEEEEEECC------C
Q 010754 227 GSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG---RTNEKSKDVTTLDWNGEGTLLATGSYD------G 296 (502)
Q Consensus 227 ~~~l~sgs-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~s~~g~~l~s~~~d------g 296 (502)
.++|+..+ ..+.|.|.|+.+..... ...+.+.. .....-..-..+.--|+|++++++-.| |
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P---------~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~G 157 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKP---------RLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPG 157 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCC---------ceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCC
Confidence 45666666 67889999988643211 11111111 000000111222233788888876432 5
Q ss_pred eEEEEECCCc-eEEEecCc---cCCeEEEEEecCCCEEEEEec--------------------CCeEEEEEcCCCceEEE
Q 010754 297 QARIWSTNGD-LKCTLSKH---KGPIFSLKWNKKGDYLLTGSC--------------------DKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 297 ~i~iwd~~~~-~~~~~~~~---~~~v~~l~~~~~~~~l~s~~~--------------------d~~i~~wd~~~~~~~~~ 352 (502)
-+.++|-++- ........ ..--+.+-|.|..+.++|... ..++.+||+.+.+.+++
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 6777776643 22233221 233567788898898888653 35899999999999999
Q ss_pred EeeccC--CeEEEEec--CCC--EEEEEeCCCeEEEEEc-CCCc----ceEEEecC-----------------CCcEEEE
Q 010754 353 FEFHSG--PTLDVDWR--NNV--SFATSSTDNMIYVCKI-GENR----PIKTFAGH-----------------QGEVNCV 404 (502)
Q Consensus 353 ~~~~~~--~v~~v~~~--~~~--~~~~~~~d~~i~i~d~-~~~~----~~~~~~~h-----------------~~~i~~l 404 (502)
+..... ....|.|. |.. -|+.+.-...|..|-- ..+. .+..+... ..-|+.|
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 987543 35567773 222 2666666666655544 3332 12222110 2447899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCC
Q 010754 405 KWDPTGSLLASCS-DDVTAKIWNMKQ 429 (502)
Q Consensus 405 ~~sp~g~~las~s-~dg~i~iwd~~~ 429 (502)
.+|.|.++|..++ .+|.|+.||+..
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred EEccCCCEEEEEcccCCcEEEEecCC
Confidence 9999999987666 489999999865
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.62 Score=43.38 Aligned_cols=207 Identities=13% Similarity=0.127 Sum_probs=113.5
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE---ECCCCCEEEEEE
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD---WNGEGTLLATGS 293 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~s~~g~~l~s~~ 293 (502)
.|..+...|+-+.|++-+ |+.+.++++..-........... ...............+...+ -...+..|+++.
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~ 112 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF---PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV 112 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc---cccccccccccccCCeeEEeeccccccceEEEEEE
Confidence 389999999877666664 49999999986543221100000 00000000111223444444 222334555544
Q ss_pred CCCeEEEEECCC------ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc----------
Q 010754 294 YDGQARIWSTNG------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS---------- 357 (502)
Q Consensus 294 ~dg~i~iwd~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------- 357 (502)
...|.+|.... .....+ .....+.+++|. ++.++.|.. +...+.|+.++.....+....
T Consensus 113 -kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~ 187 (275)
T PF00780_consen 113 -KKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNS 187 (275)
T ss_pred -CCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhccc
Confidence 45888887543 122332 345778999998 566777664 458888998776654442211
Q ss_pred --CCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceE--EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 010754 358 --GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 358 --~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~ 433 (502)
.++..+.... +.++.+.. ..-.+.+. .|.+.+ .+.- ...+..+++. ..||+..+.+ .|.||++.+++++
T Consensus 188 ~~~~~~~~~~~~-~e~Ll~~~-~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 188 SSKPLGIFQLSD-NEFLLCYD-NIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred CCCceEEEEeCC-ceEEEEec-ceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEE
Confidence 1233333333 44555443 33333343 333332 3332 2355566664 4577776665 4999999999999
Q ss_pred EEeccC
Q 010754 434 HDLREH 439 (502)
Q Consensus 434 ~~~~~h 439 (502)
+.+...
T Consensus 261 Q~i~~~ 266 (275)
T PF00780_consen 261 QTIPLP 266 (275)
T ss_pred EEEECC
Confidence 888744
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.73 Score=44.23 Aligned_cols=222 Identities=11% Similarity=0.145 Sum_probs=109.3
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC---CCEEEEEEC
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLATGSY 294 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~s~~~ 294 (502)
-+.|+|.|+|++|++ ...|.|++++ .++... ..+................++++|+ ..+|.+...
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~----------~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLK----------TPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEEC----------EEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCc----------ceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 468999999987776 5589999999 333210 0111111222334557899999994 233333332
Q ss_pred -C------C--eEEEEECCCc---------eEEEecC---ccCCeEEEEEecCCCEEEEEecCC-------------eEE
Q 010754 295 -D------G--QARIWSTNGD---------LKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDK-------------TAI 340 (502)
Q Consensus 295 -d------g--~i~iwd~~~~---------~~~~~~~---~~~~v~~l~~~~~~~~l~s~~~d~-------------~i~ 340 (502)
. . .|.-|..... .+..... ....-..|.|.|+|.+.++.+..+ .|.
T Consensus 72 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~il 151 (331)
T PF07995_consen 72 NADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKIL 151 (331)
T ss_dssp EE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEE
T ss_pred cccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEE
Confidence 1 1 3333333211 1111122 234456799999997666654432 233
Q ss_pred EEEcCCCce-------------EEEEeeccCCeEEEEecCC-CEEEEEe--CCCeEEEEEcCCC----------------
Q 010754 341 VWDVKTEEW-------------KQQFEFHSGPTLDVDWRNN-VSFATSS--TDNMIYVCKIGEN---------------- 388 (502)
Q Consensus 341 ~wd~~~~~~-------------~~~~~~~~~~v~~v~~~~~-~~~~~~~--~d~~i~i~d~~~~---------------- 388 (502)
-.+.. ++. ...+..--.....++|.+. +.+.++- .++.=.|..+..+
T Consensus 152 ri~~d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~ 230 (331)
T PF07995_consen 152 RIDPD-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSG 230 (331)
T ss_dssp EEETT-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTS
T ss_pred Eeccc-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCC
Confidence 33321 110 0111111122457788776 6655542 2222222222111
Q ss_pred -------------cceEEEecCCCcEEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeEE---E-eccCCCcEE
Q 010754 389 -------------RPIKTFAGHQGEVNCVKWDP-------TGSLLASCSDDVTAKIWNMKQDKYVH---D-LREHSKEIY 444 (502)
Q Consensus 389 -------------~~~~~~~~h~~~i~~l~~sp-------~g~~las~s~dg~i~iwd~~~~~~~~---~-~~~h~~~i~ 444 (502)
.++..+..| ..++.+.|.. .|.+|++.-..+.|....+..+..+. . +......+.
T Consensus 231 ~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~ 309 (331)
T PF07995_consen 231 PPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPR 309 (331)
T ss_dssp S-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EE
T ss_pred CccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCce
Confidence 133444433 5677777764 45567666666778777776553322 2 223455799
Q ss_pred EEEEccCCC
Q 010754 445 TIRWSPTGS 453 (502)
Q Consensus 445 ~v~~sp~g~ 453 (502)
.|++.|||.
T Consensus 310 ~v~~~pDG~ 318 (331)
T PF07995_consen 310 DVAQGPDGA 318 (331)
T ss_dssp EEEEETTSE
T ss_pred EEEEcCCCe
Confidence 999999998
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.51 Score=43.02 Aligned_cols=161 Identities=13% Similarity=0.185 Sum_probs=101.5
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s 291 (502)
.|-+..|.++.|+|+.+.|++........||=..+|..+..+... . -+..-.+.|..+|++.++
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-----------g-----~~DpE~Ieyig~n~fvi~ 145 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-----------G-----FSDPETIEYIGGNQFVIV 145 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-----------c-----cCChhHeEEecCCEEEEE
Confidence 344566999999999988888877777777766666543322111 1 234567778888888877
Q ss_pred EECCCeEEEEECCCc--e------EEEec--Cc-cCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE---ee--
Q 010754 292 GSYDGQARIWSTNGD--L------KCTLS--KH-KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---EF-- 355 (502)
Q Consensus 292 ~~~dg~i~iwd~~~~--~------~~~~~--~~-~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~-- 355 (502)
-=.++.+.++.++.. . ...+. .+ +...-.++|.|....|+.+-.-+-+.||.+..+...... ..
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~ 225 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPT 225 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcc
Confidence 777888888875422 1 11111 12 556789999999988888887777777765432211000 00
Q ss_pred -----ccCCeEEEEec--CCCEEEEEeCCCeEEEEEcCCC
Q 010754 356 -----HSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGEN 388 (502)
Q Consensus 356 -----~~~~v~~v~~~--~~~~~~~~~~d~~i~i~d~~~~ 388 (502)
.-..+..+.|. .+..++.+..++.+.-.|....
T Consensus 226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 11234555664 4566777778888877776544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=38.10 Aligned_cols=29 Identities=28% Similarity=0.614 Sum_probs=27.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEec
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTI 244 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~ 244 (502)
..|.+++|+|...+||.|+.||.|.++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 56899999999999999999999999998
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.5 Score=44.27 Aligned_cols=152 Identities=13% Similarity=0.165 Sum_probs=82.7
Q ss_pred ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcc
Q 010754 311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390 (502)
Q Consensus 311 ~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~ 390 (502)
...-.+.+..+.-+++|.++++++......-||--.......-......+..|.|.++..+......|.|+.=+....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~-- 217 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDD-- 217 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTE--
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCC--
Confidence 344557788888899999999887777777888654444544455677899999999988877778898888772211
Q ss_pred eEEEec-------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec---cCCCcEEEEEEccCCCCCCCCCc
Q 010754 391 IKTFAG-------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQ 460 (502)
Q Consensus 391 ~~~~~~-------h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~v~~sp~g~~~~~~~~ 460 (502)
...+.. ..-.+..++|.+++...|+|+. |.+ +.....|+--.... .-...++.|.|.+...
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~------- 288 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK------- 288 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE-------
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc-------
Confidence 112211 1234889999999888876665 433 34444444333332 3345689999976643
Q ss_pred cEEEEeecCceEEE
Q 010754 461 QLILARLIPYFLYW 474 (502)
Q Consensus 461 ~l~las~~~~~~iw 474 (502)
.++.+.++.+.-|
T Consensus 289 -gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 289 -GFVLGQDGVLLRY 301 (302)
T ss_dssp -EEEE-STTEEEEE
T ss_pred -eEEECCCcEEEEe
Confidence 3555555655444
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.045 Score=58.13 Aligned_cols=136 Identities=14% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEE-----EEe------eccCCeEEEEecCC--CEEEEEeCCCeE
Q 010754 316 GPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQ-----QFE------FHSGPTLDVDWRNN--VSFATSSTDNMI 380 (502)
Q Consensus 316 ~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~-----~~~------~~~~~v~~v~~~~~--~~~~~~~~d~~i 380 (502)
.+|..+..++++...++... +-.|..||+++-..-. -+. .......++.|.|. ..++++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 45666666777765554333 4478999987543211 011 12234567778664 447788899999
Q ss_pred EEEEcCCCcc-eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc----CCCcEEEEEEccCCC
Q 010754 381 YVCKIGENRP-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGS 453 (502)
Q Consensus 381 ~i~d~~~~~~-~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~----h~~~i~~v~~sp~g~ 453 (502)
++..+..... +.++. -....++++|+|.|+.++.|-..|++.-|... .+....+.. ....|.+|+|--.-.
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEeccee
Confidence 9888765433 33333 45678999999999999999999999888743 332233321 135688999977643
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.0074 Score=62.11 Aligned_cols=171 Identities=12% Similarity=0.141 Sum_probs=97.7
Q ss_pred CCCCeEEEEECC-CCCEEEEEECCCeEEEEECC---CceEEE-----ecCccCCeEEEEEec---CCCEEEEEecCCeEE
Q 010754 273 KSKDVTTLDWNG-EGTLLATGSYDGQARIWSTN---GDLKCT-----LSKHKGPIFSLKWNK---KGDYLLTGSCDKTAI 340 (502)
Q Consensus 273 ~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~---~~~~~~-----~~~~~~~v~~l~~~~---~~~~l~s~~~d~~i~ 340 (502)
..+.|..+.|.. +...++ -.-|.+.||+++ |+.... .......+.-+.|.| +.-++..+..+++|+
T Consensus 131 f~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~ 208 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIR 208 (1283)
T ss_pred CCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCcee
Confidence 345677777643 222222 223778999854 443322 223334455566665 455666677778888
Q ss_pred EEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 341 ~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg 420 (502)
+....+... ..|..|...+.++++...+.+...+ .||||..||+++.||
T Consensus 209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------------lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------------LSPDGTVFAWAISDG 257 (1283)
T ss_pred EeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------------eCCCCcEEEEeecCC
Confidence 776654332 2344477777777665444332221 799999999999999
Q ss_pred cEEEEEC-----CCCeeEEEeccCC-CcEEEEEEccCCCCCCC-CCccEEEEeec--CceEEEEe
Q 010754 421 TAKIWNM-----KQDKYVHDLREHS-KEIYTIRWSPTGSGTNN-PNQQLILARLI--PYFLYWIC 476 (502)
Q Consensus 421 ~i~iwd~-----~~~~~~~~~~~h~-~~i~~v~~sp~g~~~~~-~~~~l~las~~--~~~~iw~~ 476 (502)
.+++|.+ ..-.|++..+.|+ .+-.|.-|+..-..... +...+++.+.| ..+++|.+
T Consensus 258 ~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 258 SVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred ccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 9888875 3445777788887 44333334333332222 23334444444 44788854
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.77 Score=43.25 Aligned_cols=156 Identities=14% Similarity=0.134 Sum_probs=91.5
Q ss_pred CeEEEEeCCCcEEEEecCCC-CccCCCCCCCceeEEEeeecCccccCCCC-eEEEEECCCCCEEEEEECCCeEEEEECCC
Q 010754 228 SLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKD-VTTLDWNGEGTLLATGSYDGQARIWSTNG 305 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 305 (502)
.-+.+-|.||++.-..+... +.. .+... .+.....+ +..-++...+..++--+++|.|+--|+.+
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~------------~~~t~-~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEA------------QKSTK-VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEE------------EEEEE-ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETT
T ss_pred CceEEEecCCceEEEEECCCCCEe------------Eeecc-ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccC
Confidence 46888899999999998843 311 11111 11111122 22334555666666688999999998876
Q ss_pred ceEEEecC-------------ccCCeEEEEEecCCCEEEEEec---CC-------eEEEEEcCCCceEEEEeeccCCeEE
Q 010754 306 DLKCTLSK-------------HKGPIFSLKWNKKGDYLLTGSC---DK-------TAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 306 ~~~~~~~~-------------~~~~v~~l~~~~~~~~l~s~~~---d~-------~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
........ -.+.-.-+++++..+.|++.-. ++ .|.++|+.+++.+.++... .++.+
T Consensus 215 ~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~S 293 (342)
T PF06433_consen 215 DSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDS 293 (342)
T ss_dssp SSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESE
T ss_pred CcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-Cccce
Confidence 54322111 1223345777776666555322 11 5888899999999888753 34556
Q ss_pred EEecCCC--EEEE-EeCCCeEEEEEcCCCcceEEEecC
Q 010754 363 VDWRNNV--SFAT-SSTDNMIYVCKIGENRPIKTFAGH 397 (502)
Q Consensus 363 v~~~~~~--~~~~-~~~d~~i~i~d~~~~~~~~~~~~h 397 (502)
|..+.+. .|++ ...++.+.+||..+++.++++.+-
T Consensus 294 i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 294 IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 6665443 3444 456899999999999999888743
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.36 Score=49.90 Aligned_cols=188 Identities=18% Similarity=0.201 Sum_probs=104.9
Q ss_pred CCCeEEEEeCC------CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC---
Q 010754 226 AGSLLASGSGD------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG--- 296 (502)
Q Consensus 226 ~~~~l~sgs~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg--- 296 (502)
++.+.++|+.| .++..||..+++..... + -........+.. -+|.+.|+|+.||
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a---~----------M~~~R~~~~v~~----l~g~iYavGG~dg~~~ 394 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA---P----------MNTKRSDFGVAV----LDGKLYAVGGFDGEKS 394 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccC---C----------ccCccccceeEE----ECCEEEEEeccccccc
Confidence 46788899888 34667776665432100 0 000011112222 2678889999886
Q ss_pred --eEEEEECCCceEEEecCccCCeEEEEEe-cCCCEEEEEecCC------eEEEEEcCCCceEEEEeecc-CCeEEEEec
Q 010754 297 --QARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDK------TAIVWDVKTEEWKQQFEFHS-GPTLDVDWR 366 (502)
Q Consensus 297 --~i~iwd~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~~d~------~i~~wd~~~~~~~~~~~~~~-~~v~~v~~~ 366 (502)
.|-.||..............+..+.... -+|...++|+.++ ++..||..+.++...-.... ..-..++..
T Consensus 395 l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence 4777887765554444333333333322 2567777777554 57888988887654322211 122335666
Q ss_pred CCCEEEEEeCCCe-----EEEEEcCCCcceEE--EecCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCee
Q 010754 367 NNVSFATSSTDNM-----IYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDDV-----TAKIWNMKQDKY 432 (502)
Q Consensus 367 ~~~~~~~~~~d~~-----i~i~d~~~~~~~~~--~~~h~~~i~~l~~sp~g~~las~s~dg-----~i~iwd~~~~~~ 432 (502)
.+..++.|+.|+. |..||..+.+-... +......+-.+.+ ++...+.|+.|| +|..||..+.+.
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCce
Confidence 7777888887762 67788777653222 2222222222332 467778888775 466777655543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.9 Score=44.55 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=82.2
Q ss_pred CCeEEEEEecCCCEEEEEecC--------------CeEEEEEcCCCceEEEEeecc----CCeEEEEecC--CCEEEEEe
Q 010754 316 GPIFSLKWNKKGDYLLTGSCD--------------KTAIVWDVKTEEWKQQFEFHS----GPTLDVDWRN--NVSFATSS 375 (502)
Q Consensus 316 ~~v~~l~~~~~~~~l~s~~~d--------------~~i~~wd~~~~~~~~~~~~~~----~~v~~v~~~~--~~~~~~~~ 375 (502)
.....+++.+....+.+.+.- ..++++|-.+.+.+....... -.+.++.|.+ +..+++|.
T Consensus 715 ~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 715 ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT 794 (1096)
T ss_pred CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence 345667777644444443321 146677766665544433221 1344455644 44566654
Q ss_pred ----------CCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcE
Q 010754 376 ----------TDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443 (502)
Q Consensus 376 ----------~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i 443 (502)
..|.|.+|.......+.....+ .+.+.++..- +|++||.- ...|++|++.+.+.++.-..|..++
T Consensus 795 ~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 795 GLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLYEWTTERELRIECNISNPI 871 (1096)
T ss_pred EeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEEEccccceehhhhcccCCe
Confidence 3578888888775555444333 3455555432 68777765 4579999999987776666788888
Q ss_pred EEEEEccCCC
Q 010754 444 YTIRWSPTGS 453 (502)
Q Consensus 444 ~~v~~sp~g~ 453 (502)
..+...-.|.
T Consensus 872 ~aL~l~v~gd 881 (1096)
T KOG1897|consen 872 IALDLQVKGD 881 (1096)
T ss_pred EEEEEEecCc
Confidence 8888888877
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.1 Score=42.61 Aligned_cols=165 Identities=15% Similarity=0.174 Sum_probs=88.1
Q ss_pred eEEEEECCCCCEEEEE-ECCC----eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC-----------eEE
Q 010754 277 VTTLDWNGEGTLLATG-SYDG----QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----------TAI 340 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-----------~i~ 340 (502)
+..+.++|+|+++|.+ +..| .|+++|+.++....-.-.......+.|.++++.|+....+. .|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 4567899999988866 3334 59999997654332111111223499999988877655433 378
Q ss_pred EEEcCCCceE--EEEeeccCC--eEEEEecCCCEEE--EEeC--C-CeEEEEEcCCC----cceEEEecCCCcE-EEEEE
Q 010754 341 VWDVKTEEWK--QQFEFHSGP--TLDVDWRNNVSFA--TSST--D-NMIYVCKIGEN----RPIKTFAGHQGEV-NCVKW 406 (502)
Q Consensus 341 ~wd~~~~~~~--~~~~~~~~~--v~~v~~~~~~~~~--~~~~--d-~~i~i~d~~~~----~~~~~~~~h~~~i-~~l~~ 406 (502)
.|.+.+.... ..+...... ...+..+.++.++ .... + ..+++.++..+ .....+......+ ..+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 8888766432 444444333 5667776665532 2322 3 45888888774 2333443333333 33443
Q ss_pred cCCCCEEEEEeC---CCcEEEEECCCCee---EEEeccCCCc
Q 010754 407 DPTGSLLASCSD---DVTAKIWNMKQDKY---VHDLREHSKE 442 (502)
Q Consensus 407 sp~g~~las~s~---dg~i~iwd~~~~~~---~~~~~~h~~~ 442 (502)
. .+.+++.... .+.|.-.++.+... ...+..+...
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence 3 4444444433 35666677766542 2244445543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.27 Score=49.04 Aligned_cols=145 Identities=16% Similarity=0.271 Sum_probs=88.7
Q ss_pred ccCCeEEEEEecCCCEE-EEEe--cCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-----EEEEEeCCCeEEEEEc
Q 010754 314 HKGPIFSLKWNKKGDYL-LTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-----SFATSSTDNMIYVCKI 385 (502)
Q Consensus 314 ~~~~v~~l~~~~~~~~l-~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-----~~~~~~~d~~i~i~d~ 385 (502)
--.+|..++|. ||+.+ ++.- .+|.+++=|. ..+.+| ..|..+.|.|-. .+++.-....|.+|.+
T Consensus 18 AiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL 89 (671)
T PF15390_consen 18 AIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQL 89 (671)
T ss_pred hhccccceEec-CCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEe
Confidence 34688999997 55544 4432 2444444332 223333 357889997642 4777778899999998
Q ss_pred CCC-----cceEEEecC-CC----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEeccCCCcEEEEEEccCCC
Q 010754 386 GEN-----RPIKTFAGH-QG----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 386 ~~~-----~~~~~~~~h-~~----~i~~l~~sp~g~~las~s~dg~i~iwd~~~~--~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
... +.+..-..+ .. --.++.|+|....|+.-.....-.+++++.. .....++ ..+-|.+.+|.+||+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQ 168 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCC
Confidence 632 222221111 11 1235789999998887776655556666543 3334454 556799999999999
Q ss_pred CCCCCCccEEEEeec-CceEEE
Q 010754 454 GTNNPNQQLILARLI-PYFLYW 474 (502)
Q Consensus 454 ~~~~~~~~l~las~~-~~~~iw 474 (502)
+|++|-++ -...+|
T Consensus 169 -------RLVVAvGSsLHSyiW 183 (671)
T PF15390_consen 169 -------RLVVAVGSSLHSYIW 183 (671)
T ss_pred -------EEEEEeCCeEEEEEe
Confidence 77777666 224555
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.042 Score=47.81 Aligned_cols=104 Identities=14% Similarity=0.184 Sum_probs=59.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG- 305 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~- 305 (502)
+..+++|+.+|.|.+|+..--.... .........-.+.+.--.++.+.++++.||.|+.|+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~---------------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS---------------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCCccchHH---------------HhhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 4568999999999999876211100 000000111122222233566889999999999999764
Q ss_pred ceEEEecCcc-CCeEEEEEecCCCEEEEE--ecCCeEEEEEcC
Q 010754 306 DLKCTLSKHK-GPIFSLKWNKKGDYLLTG--SCDKTAIVWDVK 345 (502)
Q Consensus 306 ~~~~~~~~~~-~~v~~l~~~~~~~~l~s~--~~d~~i~~wd~~ 345 (502)
+.......|. .++..+..+..+..+..+ |.|..++.|++.
T Consensus 135 k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 135 KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 4444444555 444444444445555555 556666666654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.2 Score=41.00 Aligned_cols=150 Identities=11% Similarity=0.094 Sum_probs=84.7
Q ss_pred cCCeEEEEEecCCCEEEEEecCCeEEE-EEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEE
Q 010754 315 KGPIFSLKWNKKGDYLLTGSCDKTAIV-WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393 (502)
Q Consensus 315 ~~~v~~l~~~~~~~~l~s~~~d~~i~~-wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 393 (502)
...+.++.+.|++.+++++ ..|.+.. +|-....+..........+.++.+.+++.++..+..|.+++=....+..-..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcccc
Confidence 4578899999987666554 4554443 2322122333333345578888888877776667778765422333332111
Q ss_pred Eec----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec---cCCCcEEEEEEccCCCCCCCCCccEEEEe
Q 010754 394 FAG----HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQQLILAR 466 (502)
Q Consensus 394 ~~~----h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~v~~sp~g~~~~~~~~~l~las 466 (502)
... ....+..+.+.|++..+++| .+|.|. .....++.-.... .-....+.+.|..++. .++++
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~--------~~~~G 320 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK--------GFVLG 320 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc--------eEEEC
Confidence 111 12357889999988766554 566554 4444444333332 2223588888887765 35555
Q ss_pred ecCceEEEE
Q 010754 467 LIPYFLYWI 475 (502)
Q Consensus 467 ~~~~~~iw~ 475 (502)
..+.+..|.
T Consensus 321 ~~G~il~~~ 329 (334)
T PRK13684 321 QRGVLLRYV 329 (334)
T ss_pred CCceEEEec
Confidence 556655543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.61 Score=48.01 Aligned_cols=108 Identities=15% Similarity=0.261 Sum_probs=73.5
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCceEEEec--CccCCeEEEEEe--cCCCEEEEEecCCeEEEEEcC-------
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVK------- 345 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~l~~~--~~~~~l~s~~~d~~i~~wd~~------- 345 (502)
.+-+.-+.-++..++-+....+.|||.++.....-. ...+.|.++.|. |+|+.+++.+..+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 444444555555555455568999998865533222 347889999996 688999999999999999531
Q ss_pred --CCceEEEEee---ccCCeEEEEecCCCEEEEEeCCCeEEEEEc
Q 010754 346 --TEEWKQQFEF---HSGPTLDVDWRNNVSFATSSTDNMIYVCKI 385 (502)
Q Consensus 346 --~~~~~~~~~~---~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~ 385 (502)
+...++.+.. ...+|.+..|.+++.+++|+ ++.+.|+|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 1123333322 33579999999999888876 456777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.72 Score=47.37 Aligned_cols=155 Identities=14% Similarity=0.244 Sum_probs=92.7
Q ss_pred CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE----eeccCCeEEEEecCCCEE
Q 010754 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF----EFHSGPTLDVDWRNNVSF 371 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~~~~~~v~~v~~~~~~~~ 371 (502)
-.|+||+..|.......-..+.+..+.|+.+ ..|++...+|++++|++-.. .+..+ ......|..+.+..++.+
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCceE
Confidence 4689999998887766655668899999976 46777789999999997432 22211 111122322222222222
Q ss_pred EEEeCCCeEEEEEcCC-----------------------C-------------------------cceEEEecCCCcEEE
Q 010754 372 ATSSTDNMIYVCKIGE-----------------------N-------------------------RPIKTFAGHQGEVNC 403 (502)
Q Consensus 372 ~~~~~d~~i~i~d~~~-----------------------~-------------------------~~~~~~~~h~~~i~~ 403 (502)
+....+..+.+-+... . .....+....+.+..
T Consensus 142 vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVK 221 (829)
T ss_pred EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEE
Confidence 2221111111111110 0 000011111245778
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec--cCCCcEEEEEEccCCC
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~--~h~~~i~~v~~sp~g~ 453 (502)
+..||+.++||--..+|.|.+-++...+++..+. .|.. --.++|.-+..
T Consensus 222 i~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcgnda 272 (829)
T KOG2280|consen 222 ISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCGNDA 272 (829)
T ss_pred EEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeecCCc
Confidence 8999999999999999999999988877776666 3333 34788887765
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.1 Score=44.99 Aligned_cols=126 Identities=16% Similarity=0.261 Sum_probs=73.8
Q ss_pred cCCCceEEEEEcCC----CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 213 GHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 213 ~H~~~V~~~~~~p~----~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
|....|..+.|.|- ...|+.......|.||.+.-..... ...-......+...+ .---..+.|+|....
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~----~K~l~sQtcEi~e~~---pvLpQGCVWHPk~~i 126 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTER----NKLLMSQTCEIREPF---PVLPQGCVWHPKKAI 126 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccc----ccceeeeeeeccCCc---ccCCCcccccCCCce
Confidence 45577999999994 2244455566899999986332110 000000000111110 011235679999888
Q ss_pred EEEEECCCeEEEEECC--CceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcC
Q 010754 289 LATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVK 345 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~ 345 (502)
|++-.....-.++++. +..+..-....+.|.|.+|.+||+.|+++- ..=.-++||-.
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 8877765554555543 333333335668899999999998877653 33456788853
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.50 E-value=3.2 Score=44.21 Aligned_cols=202 Identities=13% Similarity=0.218 Sum_probs=122.7
Q ss_pred CCceEEeccCC-------CceEEEEEcCC-CCeEEEEeC----------CCcEEEEecCCCCccCCCCCCCceeEEEeee
Q 010754 205 NSDVTILEGHT-------SEVCACAWSPA-GSLLASGSG----------DSTARIWTIADGTSNGGAQNGPLNVLVLKHV 266 (502)
Q Consensus 205 ~~~~~~l~~H~-------~~V~~~~~~p~-~~~l~sgs~----------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 266 (502)
.+...++..|. -+|.++.|..| +.+++.|.. .|.|.|+.+.+...+. ..
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~--------~v----- 823 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE--------LV----- 823 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee--------ee-----
Confidence 34445555554 34566668877 667777742 3555566555422110 00
Q ss_pred cCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc-eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC
Q 010754 267 KGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK 345 (502)
Q Consensus 267 ~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~ 345 (502)
+...-.+.+.++.-- +|+++ ++-+..|++|+...+ ..+.-..+..++..+...-.|+.+++|..-+++.+.-.+
T Consensus 824 --~e~~v~Gav~aL~~f-ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 824 --AETVVKGAVYALVEF-NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred --eeeeeccceeehhhh-CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 001112345555322 45555 455678999997654 666667788899999999999999999988877765443
Q ss_pred --CCceEEEE-eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCc-------------------ceEEEecCCCcEEE
Q 010754 346 --TEEWKQQF-EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR-------------------PIKTFAGHQGEVNC 403 (502)
Q Consensus 346 --~~~~~~~~-~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~-------------------~~~~~~~h~~~i~~ 403 (502)
.|.....- ..+....+++....+..++.+..+|.+.+....+.. .+..|. |..-|.+
T Consensus 899 ~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~-hg~lv~~ 977 (1096)
T KOG1897|consen 899 GDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFR-HGSLVMQ 977 (1096)
T ss_pred ccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeee-ecceEee
Confidence 33333222 235667888888888889888899988887665421 122222 3333433
Q ss_pred E--EEcCCCCEEEEEeCCCcEEEE
Q 010754 404 V--KWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 404 l--~~sp~g~~las~s~dg~i~iw 425 (502)
+ ..+|-+..++-|..+|.|-+-
T Consensus 978 ~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 978 LGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred ccccccCCCCcEEEEEccceEEEE
Confidence 1 234555567888888887654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.30 E-value=2.3 Score=39.02 Aligned_cols=148 Identities=10% Similarity=0.036 Sum_probs=84.7
Q ss_pred CeEEEEEecCCCEEEEEe---cCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEE-eCCCeEEEEE-cCCCcce
Q 010754 317 PIFSLKWNKKGDYLLTGS---CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATS-STDNMIYVCK-IGENRPI 391 (502)
Q Consensus 317 ~v~~l~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-~~d~~i~i~d-~~~~~~~ 391 (502)
.+.+.+++++++.++... ....++++.. +....... ....+..-.|.+++.+.+. ..+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999998877655 2334555543 33232222 2336777788776665544 3444555553 2233221
Q ss_pred -EEEecC--CCcEEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC------eeEEEeccCCCcEEEEEEccCCCCCC
Q 010754 392 -KTFAGH--QGEVNCVKWDPTGSLLASCS---DDVTAKIWNMK---QD------KYVHDLREHSKEIYTIRWSPTGSGTN 456 (502)
Q Consensus 392 -~~~~~h--~~~i~~l~~sp~g~~las~s---~dg~i~iwd~~---~~------~~~~~~~~h~~~i~~v~~sp~g~~~~ 456 (502)
...... ...|+.+.+||||..+|.-. .++.|.|=-+. .+ ..+.........+.+++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~--- 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST--- 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE---
Confidence 111111 12899999999999887666 34667666442 22 11122223346799999999997
Q ss_pred CCCccEEEEeecCceEEEE
Q 010754 457 NPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 457 ~~~~~l~las~~~~~~iw~ 475 (502)
|++.+....-.+|.
T Consensus 179 -----L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 179 -----LVVLGRSAGGPVVR 192 (253)
T ss_pred -----EEEEeCCCCCceeE
Confidence 44444444444554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=43.65 Aligned_cols=136 Identities=10% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCeEEEEEecCCCEEEEEe-----------cCC-eEEEEEcCC--Cce--EEEEeeccCCeEEEEecCCCEEEEEeCCCe
Q 010754 316 GPIFSLKWNKKGDYLLTGS-----------CDK-TAIVWDVKT--EEW--KQQFEFHSGPTLDVDWRNNVSFATSSTDNM 379 (502)
Q Consensus 316 ~~v~~l~~~~~~~~l~s~~-----------~d~-~i~~wd~~~--~~~--~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~ 379 (502)
.....|+|.++|+.+++-. ..+ .|.+++-.. |+. ...+.........+++.+++ +++++....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3457789999998777643 223 677776432 332 23333334456778887777 444444443
Q ss_pred EEEEEcCCC-----cc---eEEEec----CCCcEEEEEEcCCCCEEEEEeCC-------------------CcEEEEECC
Q 010754 380 IYVCKIGEN-----RP---IKTFAG----HQGEVNCVKWDPTGSLLASCSDD-------------------VTAKIWNMK 428 (502)
Q Consensus 380 i~i~d~~~~-----~~---~~~~~~----h~~~i~~l~~sp~g~~las~s~d-------------------g~i~iwd~~ 428 (502)
.++.|.... +. +..+.. +......++|.|+|.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 334354321 11 122322 13447789999999876655421 345555555
Q ss_pred CCeeEEEeccCCCcEEEEEEccCCC
Q 010754 429 QDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 429 ~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+++....-.++ .....++|+|+|.
T Consensus 173 g~~~e~~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 173 GGKLRVVAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred CCeEEEEecCc-CCCccceECCCCC
Confidence 44432222232 3357899999987
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.10 E-value=4.7 Score=41.46 Aligned_cols=200 Identities=10% Similarity=-0.008 Sum_probs=106.4
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-C
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-G 305 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~ 305 (502)
+..|+.++.++.|.-.|..+++.+-......... .... ......-..+++ .+..++.++.|+.+.-+|.. +
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~-----~~~~-~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDD-----VIPV-MCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcc-----cccc-cccccccccceE--ECCEEEEEcCCCEEEEEECCCC
Confidence 4466667777888888988887543222110000 0000 000000011122 13467778889999999975 5
Q ss_pred ceEEEecCccCC-eEEEEEec--CCCEEEEEe------cCCeEEEEEcCCCceEEEEeeccCC-----------------
Q 010754 306 DLKCTLSKHKGP-IFSLKWNK--KGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFHSGP----------------- 359 (502)
Q Consensus 306 ~~~~~~~~~~~~-v~~l~~~~--~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~----------------- 359 (502)
+.+......... -..+.-+| .+..++++. .+|.|..+|..+|+.+-.+......
T Consensus 141 k~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~ 220 (527)
T TIGR03075 141 KVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGA 220 (527)
T ss_pred CEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccccc
Confidence 555443321100 00111112 123455543 2689999999999987765432111
Q ss_pred --------------e-EEEEecC-CCEEEEEeC-----CC-----------eEEEEEcCCCcceEEEecCCCc-------
Q 010754 360 --------------T-LDVDWRN-NVSFATSST-----DN-----------MIYVCKIGENRPIKTFAGHQGE------- 400 (502)
Q Consensus 360 --------------v-~~v~~~~-~~~~~~~~~-----d~-----------~i~i~d~~~~~~~~~~~~h~~~------- 400 (502)
+ ..+.+.+ .+.+..+.. ++ .|.-.|+++++....|......
T Consensus 221 ~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~ 300 (527)
T TIGR03075 221 KTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV 300 (527)
T ss_pred CCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC
Confidence 0 0112222 223333321 11 6777888888887766542221
Q ss_pred --EEEEEEcCCCC---EEEEEeCCCcEEEEECCCCeeEE
Q 010754 401 --VNCVKWDPTGS---LLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 401 --i~~l~~sp~g~---~las~s~dg~i~iwd~~~~~~~~ 434 (502)
..-+.+..+|+ .++.+..+|.+++.|-.+|+++.
T Consensus 301 ~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 301 NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 12233334676 78899999999999999999863
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.97 Score=47.07 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=90.2
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCC------CCCCCceeEEEeeecCccccCCCCeEEEEECC--CCCEEEEEECCCeE
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGG------AQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLATGSYDGQA 298 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~s~~~dg~i 298 (502)
.++|+.+. .+.|.||++........ +...+......... .........|+.|.... +...|+.|..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~-~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRL-ISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCcccccccccc-ccCCCCCceeeEEEecccCCeeEEEEEecCCeE
Confidence 66777766 48999999865432111 00000000000000 00011233466665543 55689999999999
Q ss_pred EEEECCC-------c--------------eEEEecCccCCeEEEEEe--cCCCEEEEEecCCeEEEEEcCCC--ceEE-E
Q 010754 299 RIWSTNG-------D--------------LKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVKTE--EWKQ-Q 352 (502)
Q Consensus 299 ~iwd~~~-------~--------------~~~~~~~~~~~v~~l~~~--~~~~~l~s~~~d~~i~~wd~~~~--~~~~-~ 352 (502)
.+|.++. . ....+ .....+++++++ ...++||+++....|.||-.... +... .
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9996420 0 00111 134468999998 77788888888888888755432 1111 0
Q ss_pred EeeccCCeEEEEecCCC-------EEEEEeCCCeEEEEEc
Q 010754 353 FEFHSGPTLDVDWRNNV-------SFATSSTDNMIYVCKI 385 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~~-------~~~~~~~d~~i~i~d~ 385 (502)
-..+...|.+|+|.++. .+++++-.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11245568888885432 5778889999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.7 Score=39.89 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=89.8
Q ss_pred CCeEEEEECCCCCEEEEEE---CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE-cCCCceE
Q 010754 275 KDVTTLDWNGEGTLLATGS---YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD-VKTEEWK 350 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~ 350 (502)
..+.+.+++++|+.++... ....+.++...+.....+.+ ..+..-.|++++...+....+...+++. ..++...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 3689999999999887766 33466666655544444432 3678889999977666666666666663 3333322
Q ss_pred E-EEeec--cCCeEEEEecCCCE-EEEE---eCCCeEEEEEcC---CC------cceEEEecCCCcEEEEEEcCCCCEEE
Q 010754 351 Q-QFEFH--SGPTLDVDWRNNVS-FATS---STDNMIYVCKIG---EN------RPIKTFAGHQGEVNCVKWDPTGSLLA 414 (502)
Q Consensus 351 ~-~~~~~--~~~v~~v~~~~~~~-~~~~---~~d~~i~i~d~~---~~------~~~~~~~~h~~~i~~l~~sp~g~~la 414 (502)
. ..... ...|..+.+++++. ++.. ..++.|.+--+. .+ .++.........++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 12211 12799999988765 3333 346777776543 22 12222223356799999999999887
Q ss_pred EEeCCC
Q 010754 415 SCSDDV 420 (502)
Q Consensus 415 s~s~dg 420 (502)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 776543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.04 E-value=2.1 Score=44.71 Aligned_cols=109 Identities=12% Similarity=0.160 Sum_probs=65.4
Q ss_pred cCCCEEEEEeCCCeEEEEEcCC--------------------CcceEEEecCCCcEEEEEEc--CCCCEEEEEeCCCcEE
Q 010754 366 RNNVSFATSSTDNMIYVCKIGE--------------------NRPIKTFAGHQGEVNCVKWD--PTGSLLASCSDDVTAK 423 (502)
Q Consensus 366 ~~~~~~~~~~~d~~i~i~d~~~--------------------~~~~~~~~~h~~~i~~l~~s--p~g~~las~s~dg~i~ 423 (502)
.....+++|..||.|.+|.+.. -+|...+. -...+++++++ ...++||.++....|.
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence 4455577777888888886521 01222233 34578999998 8888999999888888
Q ss_pred EEECCCC--eeEE-EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 424 IWNMKQD--KYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 424 iwd~~~~--~~~~-~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
||-.... +... .-..|...|.+|+|-++.. +++..+.+++.|=...+|.+.+
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~---d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDL---DPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCeeEeecCCC---CCccceEEEEEeccCcEEEEEE
Confidence 8865432 1111 1113566799999999875 2222234444444444454444
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.8 Score=38.14 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=107.0
Q ss_pred ceeeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccC
Q 010754 199 ESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGD-----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273 (502)
Q Consensus 199 ~~~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (502)
...-++...-+.+.||. .|||||.+|...-.| |.|-|||...+-. .......|
T Consensus 103 ~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fq----------------rvgE~~t~ 160 (366)
T COG3490 103 EPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ----------------RVGEFSTH 160 (366)
T ss_pred CcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccc----------------eecccccC
Confidence 34445555667778886 799999988877554 6788999874321 12233334
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEE--------------------E-CCCceEE--Eec--CccCCeEEEEEecCCC
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIW--------------------S-TNGDLKC--TLS--KHKGPIFSLKWNKKGD 328 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iw--------------------d-~~~~~~~--~~~--~~~~~v~~l~~~~~~~ 328 (502)
.-.-..+.|.+||+.++.+. |-|... | ..+.++. ++. .+.-.|..+...++|.
T Consensus 161 GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt 238 (366)
T COG3490 161 GIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT 238 (366)
T ss_pred CcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc
Confidence 44566788999999988775 334333 2 1121111 111 2334566777777766
Q ss_pred EEEEEecCCe-----EEEEEcCCCceEEEEeec-------cCCeEEEEecC-CCE-EEEEeCCCeEEEEEcCCCcceEEE
Q 010754 329 YLLTGSCDKT-----AIVWDVKTEEWKQQFEFH-------SGPTLDVDWRN-NVS-FATSSTDNMIYVCKIGENRPIKTF 394 (502)
Q Consensus 329 ~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~-------~~~v~~v~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~ 394 (502)
.++.+-..|. -.+=-...++.+..+... ..-|-+|+... ++. .+++-..+...+||..++..+..-
T Consensus 239 vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a 318 (366)
T COG3490 239 VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEA 318 (366)
T ss_pred EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecc
Confidence 5554433221 111111223333222211 11234455432 333 344445667789999999876433
Q ss_pred ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 395 AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 395 ~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
.- ..+..++- ...=++..+.+|.+.++.
T Consensus 319 ~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 319 AL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cc--ccccccee--ccCceEEecCCceEEecc
Confidence 21 12233333 333466667788888774
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.46 Score=45.82 Aligned_cols=139 Identities=16% Similarity=0.208 Sum_probs=89.2
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCC---ceEEEe-cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceE--
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNG---DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-- 350 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~---~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-- 350 (502)
-+.+-|.. .+..+.|...|.+.-|-+.+ .....+ ....++|.+++|++|.+.+++--.+++|.+++....+..
T Consensus 25 sngvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 34444443 34444455557777776543 222222 235679999999999999999999999999987433222
Q ss_pred --EEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCC-cceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 351 --QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 351 --~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
+..+.....|...+|..+..++.....| +-+|.+... +.++..+.|.-.|+--.|.++.+.+.-++
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 2223344568999998887777766655 444544332 34555566777788888888877654443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.88 E-value=3 Score=38.00 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=110.6
Q ss_pred CeEEEEECCCCCEEEEEECCC--eEEEEECCCceEEEecCccCC--eEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDG--QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
....+.|..+|.++-+.+.-| .|+.+|+.+........-... --.++...+ +.....=.++...+||..+.+.+.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence 456778877888888888776 788888875443322211111 123333322 223333457899999999999888
Q ss_pred EEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
++... +.-..++ .++..++.+.....++++|..+.+.++++.-.. ..++-+.|- +|...|-.=....|...|
T Consensus 125 ~~~y~-~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 125 TFPYP-GEGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EEE-S-SS--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred EEecC-CcceEEE-cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 88643 4555666 445667777778899999998877766665332 346778876 677777776777899999
Q ss_pred CCCCeeEEEecc------------C---CCcEEEEEEccCCC
Q 010754 427 MKQDKYVHDLRE------------H---SKEIYTIRWSPTGS 453 (502)
Q Consensus 427 ~~~~~~~~~~~~------------h---~~~i~~v~~sp~g~ 453 (502)
..+|+.+..+.. + ..-.+.|||.|.+.
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 999998776520 1 23479999999876
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=3.4 Score=40.58 Aligned_cols=145 Identities=13% Similarity=0.115 Sum_probs=86.1
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCce-EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce-----E
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-----K 350 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----~ 350 (502)
...+..+++|.+++.+.....++-||-.... ...-......+.++.|.+++..++++ .+|.+.. ....++. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 4556677888877777654444445533322 22223345568999999998877665 5555443 3334431 1
Q ss_pred EEEee--ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEE---ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010754 351 QQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF---AGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 351 ~~~~~--~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~h~~~i~~l~~sp~g~~las~s~dg~i~iw 425 (502)
..... ....+.++.|.+++.+++++..|.+.... ..++.-... ..-...+..+.|.++++.+++| .+|.|.-|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 22211 12348889999888888888989776653 333332222 2224568899998777666554 56766544
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.022 Score=58.83 Aligned_cols=204 Identities=14% Similarity=0.147 Sum_probs=112.7
Q ss_pred EEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCC--CCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-
Q 010754 209 TILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 284 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~- 284 (502)
..++|.++.|-.+.|-. +-..++ -.-|.+.||++.- |+... .+.+. .. ......+.-+.|+|
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~--------~l~v~-~~---~p~gs~~~~V~wcp~ 191 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQP--------QLEVT-PI---TPYGSDPQLVSWCPI 191 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccccc--------ceEEe-ec---CcCCCCcceeeeccc
Confidence 34677788888888864 222222 2236788898763 22111 11111 11 11123445566665
Q ss_pred --CCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEE-----------EecCCCEEEEEecCCeEEEEEcC-----C
Q 010754 285 --EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLK-----------WNKKGDYLLTGSCDKTAIVWDVK-----T 346 (502)
Q Consensus 285 --~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~-----------~~~~~~~l~s~~~d~~i~~wd~~-----~ 346 (502)
+.-++..+-.++.|++...+......+.+|...+..++ .+|||+.|+.++.||.++.|-+. .
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~ 271 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV 271 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc
Confidence 55677777788999988766544444445655544443 58999999999999998888652 2
Q ss_pred CceEEEEeecc-CCeEEEEecCC----------CEEEEEe-CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC---
Q 010754 347 EEWKQQFEFHS-GPTLDVDWRNN----------VSFATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--- 411 (502)
Q Consensus 347 ~~~~~~~~~~~-~~v~~v~~~~~----------~~~~~~~-~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~--- 411 (502)
-.+++....|. .+-.|..+... ...++++ .+..+++|.....+++. ...-..|..+. -++|.
T Consensus 272 ~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll--~~~~d~v~iV~-p~~~~v~~ 348 (1283)
T KOG1916|consen 272 HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL--DKLIDGVQIVG-PHDGEVTD 348 (1283)
T ss_pred HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh--hhcccceEeec-CCCccccc
Confidence 23444445554 33333223221 1133433 34568888877766651 11122333333 22222
Q ss_pred ---------EEEEEeCCCcEEEEECCC
Q 010754 412 ---------LLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 412 ---------~las~s~dg~i~iwd~~~ 429 (502)
.+++.+-+++|.+|.-+.
T Consensus 349 ~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 349 LSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 234556788999996544
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.34 Score=51.87 Aligned_cols=141 Identities=11% Similarity=-0.043 Sum_probs=85.2
Q ss_pred CCeEEEEECCCCCEEEEEE--CCCeEEEEECCCce------EEEec------CccCCeEEEEEecCC-CEEEEEecCCeE
Q 010754 275 KDVTTLDWNGEGTLLATGS--YDGQARIWSTNGDL------KCTLS------KHKGPIFSLKWNKKG-DYLLTGSCDKTA 339 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~--~dg~i~iwd~~~~~------~~~~~------~~~~~v~~l~~~~~~-~~l~s~~~d~~i 339 (502)
-.+..+..++|+...++.. .+-.|..||+..-. ..-+. .......++.|+|.- ...+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3466666677776554443 33478889975311 11111 123345788899854 346677889999
Q ss_pred EEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEec---C-CCcEEEEEEcCCCCEEE
Q 010754 340 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAG---H-QGEVNCVKWDPTGSLLA 414 (502)
Q Consensus 340 ~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~---h-~~~i~~l~~sp~g~~la 414 (502)
++.-+........-.......++++|++.+. ++.|-..|++..|...-. ....+.+ . ...|.+|+|-....+|+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEE
Confidence 9887643322211122345689999988655 888888899988865332 1222211 1 36799999987766665
Q ss_pred EE
Q 010754 415 SC 416 (502)
Q Consensus 415 s~ 416 (502)
+-
T Consensus 260 vy 261 (1405)
T KOG3630|consen 260 VY 261 (1405)
T ss_pred Ee
Confidence 43
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.6 Score=42.71 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCeEEEEECCCCCEEEEEE-----------CCC-eEEEEEC-C--Cc--eEEEecCccCCeEEEEEecCCCEEEEEecCC
Q 010754 275 KDVTTLDWNGEGTLLATGS-----------YDG-QARIWST-N--GD--LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 337 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~-----------~dg-~i~iwd~-~--~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~ 337 (502)
.....|+|.++|+++++-. ..+ .|.+++- + +. ....+...-.....|++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3478899999999887753 223 6777753 2 22 223333333456889999888 44444444
Q ss_pred eEEEEEcCCC-----ceEEE---Eeec----cCCeEEEEecCCCEEEEEeCC--------------------CeEEEEEc
Q 010754 338 TAIVWDVKTE-----EWKQQ---FEFH----SGPTLDVDWRNNVSFATSSTD--------------------NMIYVCKI 385 (502)
Q Consensus 338 ~i~~wd~~~~-----~~~~~---~~~~----~~~v~~v~~~~~~~~~~~~~d--------------------~~i~i~d~ 385 (502)
.+++.|.... +.... +... ......+.|.+++.|..+..+ +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454221 21111 2111 223667888777665443221 34555555
Q ss_pred CCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 386 ~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
..+.. ..+.........++|+|+|+++++-..+
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 54432 2332222345689999999988765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.5 Score=37.83 Aligned_cols=117 Identities=15% Similarity=0.253 Sum_probs=83.6
Q ss_pred CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc-CCeEEEEecCCCEEEEEe-CCCeEEEEEcCCCcc
Q 010754 313 KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSS-TDNMIYVCKIGENRP 390 (502)
Q Consensus 313 ~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~-~d~~i~i~d~~~~~~ 390 (502)
+-...+.++.|+|+.+.|++......-.+|=...|+.++++.... ...-.|.|..++.|+.+. .++.++++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 444559999999999999988888877787777899888876432 234567787778777665 467788777765532
Q ss_pred eE----------EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 391 IK----------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 391 ~~----------~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
+. .....+...-.++|+|....|..+-+-.-+.||.+..
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 21 1111245677899999999998888877777776653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.2 Score=46.06 Aligned_cols=145 Identities=8% Similarity=0.088 Sum_probs=73.3
Q ss_pred CCCEEEEEECC-----CeEEEEECCCceEEEecCccCCe--EEEEEecCCCEEEEEecC------CeEEEEEcCCCceEE
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWKQ 351 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~ 351 (502)
++.+++.||.+ ..+..||..............+. .+++. -++...+.|+.+ +.+..||..+.++..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 56777888765 34677887654433332211111 11222 245666666632 468899988876654
Q ss_pred EEeeccC-CeEEEEecCCCEEEEEeCC--------CeEEEEEcCCCcce--EEEecCCCcEEEEEEcCCCCEEEEEeCC-
Q 010754 352 QFEFHSG-PTLDVDWRNNVSFATSSTD--------NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD- 419 (502)
Q Consensus 352 ~~~~~~~-~v~~v~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~--~~~~~h~~~i~~l~~sp~g~~las~s~d- 419 (502)
.-..... .-.++....+..++.|+.+ ..+.+||..+++-. ..+.........+.+ ++++++.|+.+
T Consensus 421 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 498 (534)
T PHA03098 421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKY 498 (534)
T ss_pred cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence 2211100 1112333445556666542 23788888765422 111111111122222 56777777654
Q ss_pred ----CcEEEEECCCCee
Q 010754 420 ----VTAKIWNMKQDKY 432 (502)
Q Consensus 420 ----g~i~iwd~~~~~~ 432 (502)
+.|.+||..+.+.
T Consensus 499 ~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 499 EYYINEIEVYDDKTNTW 515 (534)
T ss_pred CcccceeEEEeCCCCEE
Confidence 4678888776553
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=2.4 Score=43.98 Aligned_cols=146 Identities=14% Similarity=0.184 Sum_probs=78.9
Q ss_pred CCCEEEEEECC-C-----eEEEEECCCceEEEecCccCCeEEEEEe-cCCCEEEEEecCC-----eEEEEEcCCCceEEE
Q 010754 285 EGTLLATGSYD-G-----QARIWSTNGDLKCTLSKHKGPIFSLKWN-KKGDYLLTGSCDK-----TAIVWDVKTEEWKQQ 352 (502)
Q Consensus 285 ~g~~l~s~~~d-g-----~i~iwd~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~ 352 (502)
+|.+.++|+.| | .+..||..............+-..+... -+|...++|+.|| +|-.||..+.++...
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 45788888888 3 5667787655444333322222222221 2567788888886 477888877665332
Q ss_pred Eeec-cCCeEEEEecCCCEEEEEeCCC------eEEEEEcCCCcc--eEEEecCCCcEEEEEEcCCCCEEEEEeCCCc--
Q 010754 353 FEFH-SGPTLDVDWRNNVSFATSSTDN------MIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-- 421 (502)
Q Consensus 353 ~~~~-~~~v~~v~~~~~~~~~~~~~d~------~i~i~d~~~~~~--~~~~~~h~~~i~~l~~sp~g~~las~s~dg~-- 421 (502)
-... ...-..++-..+..+++||.++ .+..||..++.- +..+..-..... ++. -++.+.+.|+.|+.
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSA 489 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCc
Confidence 2111 1112233334566677777544 467788776642 111211111111 222 25778888887763
Q ss_pred ---EEEEECCCCee
Q 010754 422 ---AKIWNMKQDKY 432 (502)
Q Consensus 422 ---i~iwd~~~~~~ 432 (502)
|..||..+.+.
T Consensus 490 ~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 490 LSSVERYDPETNQW 503 (571)
T ss_pred cceEEEEcCCCCce
Confidence 66777766554
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.87 Score=48.20 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=50.0
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEEcCC-CceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEE
Q 010754 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF 394 (502)
Q Consensus 316 ~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 394 (502)
-.|..|.++|+|.+++..|..|. .|..+.. ......+......+.|-. +.+... +. .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt------------------~~v~~~--~~-~ 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRT------------------VPVDER--FF-T 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEE------------------EEechh--hc-c
Confidence 35788889999999888877554 4444421 111111221111121111 111110 00 1
Q ss_pred ecCCCcEEEEEEcCC---CCEEEEEeCCCcEEEEECCC
Q 010754 395 AGHQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 395 ~~h~~~i~~l~~sp~---g~~las~s~dg~i~iwd~~~ 429 (502)
..+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 143 ~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 143 SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 123456778888886 46777778888888888754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=7.9 Score=41.31 Aligned_cols=192 Identities=9% Similarity=0.074 Sum_probs=100.6
Q ss_pred CceEEEEEcCCCCeEEEEeCC-----CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 216 SEVCACAWSPAGSLLASGSGD-----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
-.+..+.|+|++++|+.+... ..|++-|+.++..+... + ...-..++|.+|++.|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~------------i-------~~~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL------------L-------DNVEPSFVWANDSWTFY 187 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc------------c-------cCcceEEEEeeCCCEEE
Confidence 456778999999988876432 35778888766421100 0 01114589999998776
Q ss_pred EEECC------CeEEEEECCCc---eEEEecCccCCeE-EEEEecCCCEEEEEec---CCeEEEEEc--CCCceEEEEee
Q 010754 291 TGSYD------GQARIWSTNGD---LKCTLSKHKGPIF-SLKWNKKGDYLLTGSC---DKTAIVWDV--KTEEWKQQFEF 355 (502)
Q Consensus 291 s~~~d------g~i~iwd~~~~---~~~~~~~~~~~v~-~l~~~~~~~~l~s~~~---d~~i~~wd~--~~~~~~~~~~~ 355 (502)
....+ ..|..+++.+. ....+........ .+..+.++++++..+. ++.+.+|+. ..+.....+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 66543 35667776543 2233333333333 2233447777665433 457888884 23443222322
Q ss_pred ccCCeEEEEecCCCEEEEEeC----CCeEEEEEcCCCcceEEEecC-C-CcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 356 HSGPTLDVDWRNNVSFATSST----DNMIYVCKIGENRPIKTFAGH-Q-GEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~h-~-~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
.......+. ..+..|...+. ...|...++........+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus 268 ~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 268 RKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 223333333 22334333332 223444455422222344445 3 368888887 34566677777765555443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.29 E-value=6 Score=40.67 Aligned_cols=151 Identities=8% Similarity=0.014 Sum_probs=88.1
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCcc-CCeE----------EEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHK-GPIF----------SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~v~----------~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
+..+++++.++.|.-+|.. ++.+..+.... ..+. .+.+ .+..++.++.|+.+.-.|..+|+.+..+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 3466667777778877865 44444433211 1111 1122 2356778889999999999999988766
Q ss_pred eeccC----CeEEEEecCCCEEEEEeC------CCeEEEEEcCCCcceEEEecCC-------------------------
Q 010754 354 EFHSG----PTLDVDWRNNVSFATSST------DNMIYVCKIGENRPIKTFAGHQ------------------------- 398 (502)
Q Consensus 354 ~~~~~----~v~~v~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~h~------------------------- 398 (502)
..... .+.+--...++.++++.. +|.|+.+|..+++.+..+..-.
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 53211 111100011445555542 6899999999998776543211
Q ss_pred ------CcEE-EEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCeeEEEecc
Q 010754 399 ------GEVN-CVKWDPTGSLLASCSDD-----V-----------TAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 399 ------~~i~-~l~~sp~g~~las~s~d-----g-----------~i~iwd~~~~~~~~~~~~ 438 (502)
+.+. .++++|...+|..+..+ + +|.--|++||+....++.
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 0111 24677766666665522 2 566778889998877764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.26 E-value=7.9 Score=41.20 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCC-CccCCCCCCCceeEEEeeec---CccccCCCCeEEEEECCC---CCE
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADG-TSNGGAQNGPLNVLVLKHVK---GRTNEKSKDVTTLDWNGE---GTL 288 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~s~~---g~~ 288 (502)
-.|..+..||+|++||..|..| |.|-.+... .....+..+...+.+..... .........|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4588999999999999988854 666666542 11112222222222211111 122344567999999996 579
Q ss_pred EEEEECCCeEEEEECC
Q 010754 289 LATGSYDGQARIWSTN 304 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~ 304 (502)
|++-+.|+.+|+||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 9999999999999975
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.16 E-value=4.7 Score=37.28 Aligned_cols=231 Identities=16% Similarity=0.195 Sum_probs=128.8
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC---------
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT--------- 287 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~--------- 287 (502)
.-+.|+++|.+.+-++...-+...+||......... + ..+........-.......+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~----~-~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~ 98 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLV----Q-DPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGIT 98 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCC----c-cceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcc
Confidence 347899999998888888889999999863221100 0 01111111111111234577777775333
Q ss_pred ---EEEEEECCCeEEEEECCC--c----eEEEecC-ccCCe-EEEEEec--CCCEEEEEe-cCCeEEEEEcCCCceEE--
Q 010754 288 ---LLATGSYDGQARIWSTNG--D----LKCTLSK-HKGPI-FSLKWNK--KGDYLLTGS-CDKTAIVWDVKTEEWKQ-- 351 (502)
Q Consensus 288 ---~l~s~~~dg~i~iwd~~~--~----~~~~~~~-~~~~v-~~l~~~~--~~~~l~s~~-~d~~i~~wd~~~~~~~~-- 351 (502)
.++.+++||+|.-|...- . ....+.. ..+.| ..+++.. .+++|+.+. ..++|-+||-.-.....
T Consensus 99 ~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 99 GPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred cceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCC
Confidence 367789999999998431 1 1122221 12333 3455543 356676655 46789999853222110
Q ss_pred EEeecc-------------CCeEEEEec---C-CCEEEEEeCCCeEEEEEcCCCcceEEEe--cCCCcEEEEEEcC----
Q 010754 352 QFEFHS-------------GPTLDVDWR---N-NVSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDP---- 408 (502)
Q Consensus 352 ~~~~~~-------------~~v~~v~~~---~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~i~~l~~sp---- 408 (502)
.|.... +.-.-|.|. + ...=+.+..-|.|-+||.. +..++++. +.-...+.|+..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhC
Confidence 010000 001111220 0 1112333445788888875 45566563 2233456677765
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC------cEEEEEEccCCC
Q 010754 409 --TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK------EIYTIRWSPTGS 453 (502)
Q Consensus 409 --~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~------~i~~v~~sp~g~ 453 (502)
.|.+|+---.||+|..+|..+++.+-.+....+ .++.|+|....+
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~ 310 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVS 310 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcC
Confidence 467777666799999999999998877764332 368888887544
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.0052 Score=59.04 Aligned_cols=142 Identities=19% Similarity=0.301 Sum_probs=97.5
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceEEEEe
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFE 354 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~ 354 (502)
......|-+.+.-++.++.+..+..||-.+....... .++....++|..++..++ .+-..+.+.+||+.+....+.-.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3445678887777888998999999997776655443 345567889998887655 45667899999997643221111
Q ss_pred eccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 355 FHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 355 ~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
+....-.-+.|+++.. ++.+...+.+.||+.++.+.+.....|...+++++|.+.+. .+.++.|
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd 179 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCD 179 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcH
Confidence 1111112256766544 56667889999999998887766666999999999998764 3444444
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.02 E-value=2.4 Score=43.84 Aligned_cols=109 Identities=13% Similarity=0.248 Sum_probs=70.8
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe-eccCCeEEEEec---CCCEEEEEeCCCeEEEEEcC-----C
Q 010754 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWR---NNVSFATSSTDNMIYVCKIG-----E 387 (502)
Q Consensus 317 ~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~v~~~---~~~~~~~~~~d~~i~i~d~~-----~ 387 (502)
...-+.-+.-++..++-+...++.|||.+.+.....-. ...+.|.+++|. .+..+++.|..+.|.+|--. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444445555555555555689999999887544433 346789999993 24557778888888887542 1
Q ss_pred C----cceEEE--ecCC-CcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 388 N----RPIKTF--AGHQ-GEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 388 ~----~~~~~~--~~h~-~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
. .+++.+ ..|+ .+|....|.++|.+++.++ +.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 234433 3344 5799999999997776554 35788873
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.9 Score=42.53 Aligned_cols=142 Identities=10% Similarity=0.003 Sum_probs=70.7
Q ss_pred CCCEEEEEECC--CeEEEEECCCceEEEecCccCCeE--EEEEecCCCEEEEEecCC---eEEEEEcCCCceEEEEeecc
Q 010754 285 EGTLLATGSYD--GQARIWSTNGDLKCTLSKHKGPIF--SLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 285 ~g~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~v~--~l~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~ 357 (502)
+|.+.+.|+.+ ..+..||..............+.. +++ .-+|+..+.|+.++ .+..||..+.++...-....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~ 396 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY 396 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence 57777777764 357778865544333332222221 122 22566666776543 47788988776654211110
Q ss_pred C-CeEEEEecCCCEEEEEeCCCeEEEEEcCCCcc--eEEEecCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 010754 358 G-PTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIWNMKQ 429 (502)
Q Consensus 358 ~-~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~~~i~~l~~sp~g~~las~s~d-----g~i~iwd~~~ 429 (502)
. .-.++.-..+..++.| |.+.+||..+++- +..+.........+.+ +|++.+.|+.+ .++.+||..+
T Consensus 397 ~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 397 PHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred ccccceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 0 0112222334445555 3467788776542 2222211122222222 57777777754 3466777666
Q ss_pred Cee
Q 010754 430 DKY 432 (502)
Q Consensus 430 ~~~ 432 (502)
++.
T Consensus 472 ~~W 474 (480)
T PHA02790 472 YSW 474 (480)
T ss_pred CeE
Confidence 543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.1 Score=46.04 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=27.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGT 248 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~ 248 (502)
..++++.-+|.|.-+++++.||+|++|++....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 346678888999999999999999999987644
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.5 Score=43.85 Aligned_cols=142 Identities=11% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCCEEEEEECC------CeEEEEECCCceEEEecCccCCe--EEEEEecCCCEEEEEecCC-----eEEEEEcCCCceEE
Q 010754 285 EGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQ 351 (502)
Q Consensus 285 ~g~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~ 351 (502)
++.+++.||.+ ..+..||..............+. .+++ .-+|+..+.|+.++ ++..||..+.++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 56677777754 34677887665444333222111 1222 22566677777654 48889988876644
Q ss_pred EEeeccC-CeEEEEecCCCEEEEEeCC-----------------------CeEEEEEcCCCcc--eEEEecCCCcEEEEE
Q 010754 352 QFEFHSG-PTLDVDWRNNVSFATSSTD-----------------------NMIYVCKIGENRP--IKTFAGHQGEVNCVK 405 (502)
Q Consensus 352 ~~~~~~~-~v~~v~~~~~~~~~~~~~d-----------------------~~i~i~d~~~~~~--~~~~~~h~~~i~~l~ 405 (502)
.-..... .-.++.-..+..++.|+.+ ..+..||..+++- +..+....... +++
T Consensus 382 ~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~ 460 (557)
T PHA02713 382 LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV 460 (557)
T ss_pred CCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE
Confidence 2111110 1112222345556667654 2466777766532 11121111111 122
Q ss_pred EcCCCCEEEEEeCC------CcEEEEECCC
Q 010754 406 WDPTGSLLASCSDD------VTAKIWNMKQ 429 (502)
Q Consensus 406 ~sp~g~~las~s~d------g~i~iwd~~~ 429 (502)
.-+|++.+.|+.+ ..+..||..+
T Consensus 461 -~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 461 -SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred -EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 2246666777654 2367788776
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.8 Score=42.48 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=93.9
Q ss_pred cCCCEEE-EEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC--------EEEEEeCCCeEEEEEcCCCc-ceEEE
Q 010754 325 KKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--------SFATSSTDNMIYVCKIGENR-PIKTF 394 (502)
Q Consensus 325 ~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~--------~~~~~~~d~~i~i~d~~~~~-~~~~~ 394 (502)
.+.+.|+ .|+....++-.|+..|+.+.....+... -+.|.|.. .-++|-.+..|.-.|.+-.. .+..-
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3444444 4666678888899999999988877765 34554432 23455566666666655332 22211
Q ss_pred ecCCC-----cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC
Q 010754 395 AGHQG-----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP 469 (502)
Q Consensus 395 ~~h~~-----~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~ 469 (502)
. ... ..++..-. ...++|.+|..|.|++||--.-+.-..+.+....|..|..+.+|. .++|+.-.
T Consensus 555 e-sKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk--------~ilaTCk~ 624 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGK--------HILATCKN 624 (776)
T ss_pred e-ehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCc--------EEEEeecc
Confidence 1 112 23333322 345899999999999999543333345566777899999999986 68888888
Q ss_pred ceEEEEeeeEE-Eeeecc
Q 010754 470 YFLYWICSIYF-KYFGTT 486 (502)
Q Consensus 470 ~~~iw~~~~~~-~~~g~~ 486 (502)
.+.+-...+.+ .+.|..
T Consensus 625 yllL~d~~ik~g~~aGr~ 642 (776)
T COG5167 625 YLLLTDVPIKYGQPAGRD 642 (776)
T ss_pred eEEEEecccccCCccccc
Confidence 77777665543 334443
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=93.37 E-value=5.1 Score=40.67 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=73.6
Q ss_pred CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC---eEEEEecCC-C
Q 010754 294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP---TLDVDWRNN-V 369 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---v~~v~~~~~-~ 369 (502)
..+...++|.+|..+..+.........+...++|.+++... ..++.+|+. |+.+..+...... -.++...++ +
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCC
Confidence 45677888888887776654444333366778988777655 788888874 6655555433221 233444444 3
Q ss_pred EEEEEeC-------------CCeEEEEEcCCCcceEEEec--C-----------------------C--CcEEEEEEcC-
Q 010754 370 SFATSST-------------DNMIYVCKIGENRPIKTFAG--H-----------------------Q--GEVNCVKWDP- 408 (502)
Q Consensus 370 ~~~~~~~-------------d~~i~i~d~~~~~~~~~~~~--h-----------------------~--~~i~~l~~sp- 408 (502)
.++.+.. ...|..+| .+++.+..+.. | . -.++++.+.+
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 3333331 22344455 55544433210 0 0 2489999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEeccCC
Q 010754 409 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 409 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~ 440 (502)
++.+|+|+-.-..|...|.++++....+-.+.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 66667777666789999988888877776543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.19 E-value=3.7 Score=40.63 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=51.5
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEec
Q 010754 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 396 (502)
Q Consensus 317 ~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 396 (502)
.|..+..++.|..++.++.+|.+.++=.+....-..+......|.|-.+.-+..|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss--------------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS--------------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC---------------------
Confidence 46777788999998888888877665322222222222222223332222222222211
Q ss_pred CCCcEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCee
Q 010754 397 HQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 397 h~~~i~~l~~sp~g---~~las~s~dg~i~iwd~~~~~~ 432 (502)
..-.+..++|+|+. ..|..-+.|.+|||||....+.
T Consensus 164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 11234566788764 4566667788888888765443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.17 E-value=3.4 Score=35.84 Aligned_cols=172 Identities=16% Similarity=0.140 Sum_probs=92.9
Q ss_pred CCCeEEEEeC--CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE-EEEECCCeEEEEE
Q 010754 226 AGSLLASGSG--DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWS 302 (502)
Q Consensus 226 ~~~~l~sgs~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~s~~~dg~i~iwd 302 (502)
+|.++.+.+. .+.|++||+.+++.+......+ .......++.+ |..+ +..-.+|.-.++|
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~------------~~~FgEGit~~-----gd~~y~LTw~egvaf~~d 117 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP------------DTVFGEGITKL-----GDYFYQLTWKEGVAFKYD 117 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC------------ccccccceeec-----cceEEEEEeccceeEEEC
Confidence 4566666654 4579999999876432111100 00001112221 2222 2223457777777
Q ss_pred CCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee--ccC---CeEEEEecCCCEEEEEeCC
Q 010754 303 TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSG---PTLDVDWRNNVSFATSSTD 377 (502)
Q Consensus 303 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~---~v~~v~~~~~~~~~~~~~d 377 (502)
.+.-.........+.=+.++. ++..|+.++...+++.-|..+.....++.. ... .+..+.|..+..++-.-..
T Consensus 118 ~~t~~~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t 195 (262)
T COG3823 118 ADTLEELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQT 195 (262)
T ss_pred hHHhhhhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeee
Confidence 654222222223344466653 455577666666777777665544433332 122 2455667777666666666
Q ss_pred CeEEEEEcCCCcceEEEe------------cCCCcEEEEEEcCCC-CEEEEE
Q 010754 378 NMIYVCKIGENRPIKTFA------------GHQGEVNCVKWDPTG-SLLASC 416 (502)
Q Consensus 378 ~~i~i~d~~~~~~~~~~~------------~h~~~i~~l~~sp~g-~~las~ 416 (502)
..|...+..+++.+..+. .|.+-.+.|++.|++ +++++|
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 667677777777665543 234567889999987 556665
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.14 E-value=9.6 Score=37.61 Aligned_cols=142 Identities=15% Similarity=0.129 Sum_probs=82.9
Q ss_pred CCCEEEEEECCCeEEEEECCCce-----EEEecCccCCeEEEEEec----CCCEEEEEecCCeEEEEEcCC--Cc-----
Q 010754 285 EGTLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNK----KGDYLLTGSCDKTAIVWDVKT--EE----- 348 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~l~~~~----~~~~l~s~~~d~~i~~wd~~~--~~----- 348 (502)
+...|++|+..|.++||+..... +..-..-..||..+..-+ .....++.-.-+.+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999975321 222233457888887643 233444456778888888732 11
Q ss_pred --eEEEEeeccC--CeEEEEe---c--C-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 010754 349 --WKQQFEFHSG--PTLDVDW---R--N-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 349 --~~~~~~~~~~--~v~~v~~---~--~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~ 418 (502)
.+..+..|.- ....+++ - . ...+.+-+.||.+.+|+-+.-.....+.. .--...+.|.+.-..|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1122222221 2223332 1 1 35577889999999999765443333332 112224567777677777777
Q ss_pred CCcEEEEEC
Q 010754 419 DVTAKIWNM 427 (502)
Q Consensus 419 dg~i~iwd~ 427 (502)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 766666653
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.36 Score=30.03 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=26.5
Q ss_pred CceEEEEEcCC-C--CeEEEEeCCCcEEEEecCC
Q 010754 216 SEVCACAWSPA-G--SLLASGSGDSTARIWTIAD 246 (502)
Q Consensus 216 ~~V~~~~~~p~-~--~~l~sgs~dg~v~iw~~~~ 246 (502)
+.|.+|.|+|. + .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999985 4 5899888889999999885
|
It contains a characteristic DLL sequence motif. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.2 Score=42.04 Aligned_cols=146 Identities=10% Similarity=0.101 Sum_probs=72.9
Q ss_pred CCCEEEEEECCC------eEEEEECCCceEEEecCccCC--eEEEEEecCCCEEEEEecC-----CeEEEEEcCCCceEE
Q 010754 285 EGTLLATGSYDG------QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQ 351 (502)
Q Consensus 285 ~g~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~ 351 (502)
++.+++.|+.++ .+..||........+.....+ -.+++ .-++..++.|+.+ ..+..||..+.++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 456677776542 467778765544443322111 11222 2256667777765 357788888776543
Q ss_pred EEeec-cCCeEEEEecCCCEEEEEeCC------CeEEEEEcCCCcce--EEEecCCCcEEEEEEcCCCCEEEEEeCC---
Q 010754 352 QFEFH-SGPTLDVDWRNNVSFATSSTD------NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD--- 419 (502)
Q Consensus 352 ~~~~~-~~~v~~v~~~~~~~~~~~~~d------~~i~i~d~~~~~~~--~~~~~h~~~i~~l~~sp~g~~las~s~d--- 419 (502)
.-... ...-.++....+..++.||.+ +.+..||..+++-. ..+....... +++ ..++.+++.|+.+
T Consensus 373 ~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYID 450 (534)
T ss_pred CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCC
Confidence 21111 111122233455566666632 35788888765321 1111111111 122 2256666666643
Q ss_pred -----CcEEEEECCCCeeE
Q 010754 420 -----VTAKIWNMKQDKYV 433 (502)
Q Consensus 420 -----g~i~iwd~~~~~~~ 433 (502)
..+.+||..+++..
T Consensus 451 ~~~~~~~v~~yd~~~~~W~ 469 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWT 469 (534)
T ss_pred CCcccceEEEecCCCCcee
Confidence 13888888776543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.012 Score=56.62 Aligned_cols=134 Identities=14% Similarity=0.250 Sum_probs=93.9
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEe
Q 010754 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFA 395 (502)
Q Consensus 318 v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~ 395 (502)
.....|-|.+..++.++.+..+..||- .++...... ..+...+++|.-+ ..++.+-..+.+++||+.+......=.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345678888877999999999999994 444333332 3345667777543 235666788999999998754221111
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 396 ~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+-...-.-+.|++.+..++.+-..|.+.|++..+.+.+-..-.|...+++++|.+.+.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce
Confidence 1111122278999999999999999999999887776555444888999999999986
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.56 Score=29.19 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=25.8
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 010754 399 GEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 399 ~~i~~l~~sp~g---~~las~s~dg~i~iwd~~~ 429 (502)
+.|.+++|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4888887889999999995
|
It contains a characteristic DLL sequence motif. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.59 E-value=10 Score=36.59 Aligned_cols=250 Identities=11% Similarity=0.078 Sum_probs=109.6
Q ss_pred eeCCCceEEeccCCC-ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 202 EIPNSDVTILEGHTS-EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 202 ~~~~~~~~~l~~H~~-~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
.+....+..|..+.+ ......++|+++.++-......|+-.|+.+.+.. .+.... ...+-..
T Consensus 66 DL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~-----------~vy~~p------~~~~g~g 128 (386)
T PF14583_consen 66 DLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEER-----------VVYEVP------DDWKGYG 128 (386)
T ss_dssp ETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EE-----------EEEE--------TTEEEEE
T ss_pred EcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEE-----------EEEECC------ccccccc
Confidence 455666777766542 3446777888887776666678888888876421 111111 1223334
Q ss_pred EE--CCCCCEEEEEEC----------------------CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC
Q 010754 281 DW--NGEGTLLATGSY----------------------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD 336 (502)
Q Consensus 281 ~~--s~~g~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d 336 (502)
.| +.++..++..-. ...|.-.|+.+.....+.....-+..+.|+|....+++=|..
T Consensus 129 t~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE 208 (386)
T PF14583_consen 129 TWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE 208 (386)
T ss_dssp EEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-
T ss_pred ceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEecc
Confidence 44 345555433211 122333355555555555556667889999977666654443
Q ss_pred C-----eEEEEEcCC-CceEEEEeeccC--CeEEEEecCCCE-E--EEE---eCCCeEEEEEcCCCcceEEEecCCCcEE
Q 010754 337 K-----TAIVWDVKT-EEWKQQFEFHSG--PTLDVDWRNNVS-F--ATS---STDNMIYVCKIGENRPIKTFAGHQGEVN 402 (502)
Q Consensus 337 ~-----~i~~wd~~~-~~~~~~~~~~~~--~v~~v~~~~~~~-~--~~~---~~d~~i~i~d~~~~~~~~~~~~h~~~i~ 402 (502)
| .-+||-+++ +...+.+..+.. .+.-=-|.+++. + ... +.+..|.-+|+.++....... .....
T Consensus 209 Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~ 286 (386)
T PF14583_consen 209 GPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCS 286 (386)
T ss_dssp S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEE
T ss_pred CCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCcee
Confidence 3 135665432 222222222211 122223455443 1 111 223356667777765433222 23455
Q ss_pred EEEEcCCCCEEEEEeCCC----------------cEEEEECCCCeeEEE---------eccCCC-cEEEEEEccCCCCCC
Q 010754 403 CVKWDPTGSLLASCSDDV----------------TAKIWNMKQDKYVHD---------LREHSK-EIYTIRWSPTGSGTN 456 (502)
Q Consensus 403 ~l~~sp~g~~las~s~dg----------------~i~iwd~~~~~~~~~---------~~~h~~-~i~~v~~sp~g~~~~ 456 (502)
.+-.+++|++++-=+.|. .|+++++..+..... +.++.. .=....|+|||+
T Consensus 287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk--- 363 (386)
T PF14583_consen 287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGK--- 363 (386)
T ss_dssp EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSS---
T ss_pred eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCC---
Confidence 677789999886544332 466788877664311 111111 124678999998
Q ss_pred CCCccEEEEee-cCceEEEEee
Q 010754 457 NPNQQLILARL-IPYFLYWICS 477 (502)
Q Consensus 457 ~~~~~l~las~-~~~~~iw~~~ 477 (502)
.++..|. .|...++...
T Consensus 364 ----~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 364 ----WVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ----EEEEEE-TTSS-EEEEEE
T ss_pred ----EEEEECCCCCCccEEEEe
Confidence 5444433 2555555443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.37 E-value=3.2 Score=44.45 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCEEEEEecCCeEEEEEcCCCceEEEEeeccCC--------eEEEEec-----------------CCCEEEEEeCCCeEE
Q 010754 327 GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP--------TLDVDWR-----------------NNVSFATSSTDNMIY 381 (502)
Q Consensus 327 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--------v~~v~~~-----------------~~~~~~~~~~d~~i~ 381 (502)
+..|+.++.++.|.-.|..+|+.+.++...... +..+.+. .+.+++.++.|+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456666666777777777777776666543211 1122221 234688888999999
Q ss_pred EEEcCCCcceEEEecCCCcEE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCeeEEEe
Q 010754 382 VCKIGENRPIKTFAGHQGEVN-------------CVKWDP--TGSLLASCSD----------DVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 382 i~d~~~~~~~~~~~~h~~~i~-------------~l~~sp--~g~~las~s~----------dg~i~iwd~~~~~~~~~~ 436 (502)
-.|..+++.+..|. ..+.|. .+.-.| .+..++.|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999887764 222221 111112 1335555542 688999999999998776
Q ss_pred c
Q 010754 437 R 437 (502)
Q Consensus 437 ~ 437 (502)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=92.31 E-value=5.1 Score=37.21 Aligned_cols=114 Identities=11% Similarity=0.208 Sum_probs=73.5
Q ss_pred CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEe-------CCCeEEEEEcCCCcceEEEec-----CCCcEEEE
Q 010754 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS-------TDNMIYVCKIGENRPIKTFAG-----HQGEVNCV 404 (502)
Q Consensus 337 ~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~-----h~~~i~~l 404 (502)
..|++||..+.++..--..-.+.|.++.|..+..+++++ ....+..||..+..- ..+.+ -.++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 469999998888877666677889999997655544443 345678888876642 22332 13678887
Q ss_pred EEcC-CC-CEEEEEe-CC--CcEEEEECCCCeeEEE-eccCCCcEEEEEEccC
Q 010754 405 KWDP-TG-SLLASCS-DD--VTAKIWNMKQDKYVHD-LREHSKEIYTIRWSPT 451 (502)
Q Consensus 405 ~~sp-~g-~~las~s-~d--g~i~iwd~~~~~~~~~-~~~h~~~i~~v~~sp~ 451 (502)
.+.. ++ ++.++|. .+ ..|..||-.+...+.. .......|..+.+-|-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 7643 23 3454544 33 3577788776666554 3334567888887776
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.19 E-value=19 Score=38.73 Aligned_cols=151 Identities=10% Similarity=0.111 Sum_probs=86.9
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCCe-------------EEEEEec--CCCEEEEEec----------CCeE
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPI-------------FSLKWNK--KGDYLLTGSC----------DKTA 339 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v-------------~~l~~~~--~~~~l~s~~~----------d~~i 339 (502)
+..++.++.|+.+.-.|.+ ++.+..+. ..+.| ..+.-.| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 4578888889999888866 44444432 21111 0111112 1345666643 6889
Q ss_pred EEEEcCCCceEEEEeecc---------CCe---------EEEEecCC-CEEEEE------------------eCCCeEEE
Q 010754 340 IVWDVKTEEWKQQFEFHS---------GPT---------LDVDWRNN-VSFATS------------------STDNMIYV 382 (502)
Q Consensus 340 ~~wd~~~~~~~~~~~~~~---------~~v---------~~v~~~~~-~~~~~~------------------~~d~~i~i 382 (502)
+-+|.++|+.+..+.... +.+ ..+++.+. +.++.+ ...+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 999999999888775311 000 01111111 111111 12345677
Q ss_pred EEcCCCcceEEEecCCCc---------EEEEEEcC-CCC---EEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 383 CKIGENRPIKTFAGHQGE---------VNCVKWDP-TGS---LLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 383 ~d~~~~~~~~~~~~h~~~---------i~~l~~sp-~g~---~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
.|..+++....+...... ..-+.+.. +|+ .++.++.+|.+++.|.++|+.+....
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 788888877766542111 11122322 563 78999999999999999999886543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.18 E-value=8.4 Score=38.14 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=88.3
Q ss_pred CCCCEEEE-EECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCC-------EEEEEecCCeEEEEEcCCCceEEEEe
Q 010754 284 GEGTLLAT-GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-------YLLTGSCDKTAIVWDVKTEEWKQQFE 354 (502)
Q Consensus 284 ~~g~~l~s-~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~-------~l~s~~~d~~i~~wd~~~~~~~~~~~ 354 (502)
.+..+|+. |+.-..++-.|++ |+.+.....|..- -+.|.|..+ .-++|-++..|.-.|.+-........
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 34444443 3333455556655 5666666666554 566777432 23456667777777765433111111
Q ss_pred ec-----cCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 355 FH-----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 355 ~~-----~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
.. .....+..-..++.+++++..|-|++||.-..+.-..+++-...|..|..+.+|+++++.+.. .|-+-|++
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 11 112233333557889999999999999976655555677778889999999999988766654 67777753
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.10 E-value=3.6 Score=36.33 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=64.5
Q ss_pred eEEEEECCCCCEEE-EEECCCeEEEEEC--CCc------eEEEecC----ccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 277 VTTLDWNGEGTLLA-TGSYDGQARIWST--NGD------LKCTLSK----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 277 v~~l~~s~~g~~l~-s~~~dg~i~iwd~--~~~------~~~~~~~----~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
-..++|+.+.+.+. +-+.+-.|.-||. .+. .+..+.. ..-.--.++..-+|+..+++-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 35788988776554 4456678877883 221 2222221 111123455566888888888899999999
Q ss_pred cCCCceEEEEeeccCCeEEEEecCC
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDWRNN 368 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~~~~ 368 (502)
..+|+.+..+......+++++|-..
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCC
Confidence 9999999999999999999999654
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.04 E-value=2.4 Score=43.98 Aligned_cols=131 Identities=16% Similarity=0.302 Sum_probs=73.0
Q ss_pred EEEEECCCCCEEEEEECC----CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC-----eEEEEEcCCCc
Q 010754 278 TTLDWNGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEE 348 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 348 (502)
..+.|-.|..+.+++... ..+++|..+|.+-......++.=..+.|-|+|..+++-..|| .|+++. ++|-
T Consensus 205 ~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGL 283 (1243)
T COG5290 205 KIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGL 283 (1243)
T ss_pred eEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEc-cCCc
Confidence 345666666666666533 356777766655444444555556689999999999977665 355554 2221
Q ss_pred eEEEEe---eccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC
Q 010754 349 WKQQFE---FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT 409 (502)
Q Consensus 349 ~~~~~~---~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~ 409 (502)
....+. +-...+..++|.-...+......+.+.+|-..+-.-..+....-..+.-+.|+|.
T Consensus 284 rHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 284 RHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred ccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 111111 1122345566655444455556778888876554322222222334555677774
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.6 Score=39.06 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=51.5
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCceEEE--------ec-------CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC
Q 010754 282 WNGEGTLLATGSYDGQARIWSTNGDLKCT--------LS-------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (502)
Q Consensus 282 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~--------~~-------~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~ 346 (502)
+..++.+|++-+.+|.+++||+....... +. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 34568899999999999999987543221 11 3456788889998888777654 57899999877
Q ss_pred CceEEEE
Q 010754 347 EEWKQQF 353 (502)
Q Consensus 347 ~~~~~~~ 353 (502)
+.++...
T Consensus 97 ~~W~~vs 103 (219)
T PF07569_consen 97 GCWIRVS 103 (219)
T ss_pred ceeEEec
Confidence 7666543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=15 Score=36.12 Aligned_cols=133 Identities=11% Similarity=0.165 Sum_probs=76.4
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCc-----ceE
Q 010754 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR-----PIK 392 (502)
Q Consensus 318 v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~ 392 (502)
...+..++++.+++.+.....++-||--...+...-......+..+.|.+++.++..+..|.+.. ....++ ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCccccccee
Confidence 34455667777666665444344454321112222233445688899988888888888887654 333333 222
Q ss_pred EEecC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec---cCCCcEEEEEEccCCC
Q 010754 393 TFAGH--QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 393 ~~~~h--~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~v~~sp~g~ 453 (502)
..... ...+..+.|.+++..+++| ..|.+.... ..++.-.... .-..+.+.+.|.+++.
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~ 383 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKK 383 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCc
Confidence 22211 2348899999887766554 567666654 4444322222 2345789999988765
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.58 E-value=10 Score=39.70 Aligned_cols=90 Identities=19% Similarity=0.401 Sum_probs=50.0
Q ss_pred EEEecCCCE-EEEEeCCC-----eEEEEEcCCCcceEEE---ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 010754 362 DVDWRNNVS-FATSSTDN-----MIYVCKIGENRPIKTF---AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 362 ~v~~~~~~~-~~~~~~d~-----~i~i~d~~~~~~~~~~---~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
-++|.|.+. +++-+.|| .|.++..+ |-.-..+ .+....+..++|+-....++.+ ..+.|++|-..+...
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 478877554 66655544 24444322 2111111 1223345667777665555544 345799998776554
Q ss_pred EEEeccCCCcEEEEEEccCCC
Q 010754 433 VHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.....-.-..|.-+.|+|...
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEeecCCCcceeeeccccC
Confidence 433333344578899999866
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.25 E-value=16 Score=34.33 Aligned_cols=228 Identities=13% Similarity=0.153 Sum_probs=101.4
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..+..|.|.....-+++|. .+.| +...++-..-. ... ............++.|..+ ..+++| ..
T Consensus 17 ~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~---------~~~--~~~~~~~~~~l~~I~f~~~-~g~ivG-~~ 80 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQ---------PVS--LDLDNPFDYHLNSISFDGN-EGWIVG-EP 80 (302)
T ss_dssp S-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-E---------E-------S-----EEEEEEEETT-EEEEEE-ET
T ss_pred CceEEEEEecCCEEEEEec-CCEE--EEECCCCcccc---------ccc--cCCCccceeeEEEEEecCC-ceEEEc-CC
Confidence 4688999995556666664 4543 44433321100 000 0000000123667777643 344444 44
Q ss_pred CeEEEEECCC-ceEEEec---CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEEecCCCE
Q 010754 296 GQARIWSTNG-DLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNVS 370 (502)
Q Consensus 296 g~i~iwd~~~-~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~~ 370 (502)
|. .+...++ ..-..+. .-.+....+....++..++ ++..|.|+.=. ..| .+........+.+.++.-.+++.
T Consensus 81 g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~ 157 (302)
T PF14870_consen 81 GL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGR 157 (302)
T ss_dssp TE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-
T ss_pred ce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCc
Confidence 53 3333443 2222211 1223334444444443333 34445444322 223 34444455566788888888888
Q ss_pred EEEEeCCCeEE-EEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCeeEEE----eccCCCcEE
Q 010754 371 FATSSTDNMIY-VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN-MKQDKYVHD----LREHSKEIY 444 (502)
Q Consensus 371 ~~~~~~d~~i~-i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd-~~~~~~~~~----~~~h~~~i~ 444 (502)
+++.+..|.++ -||.....-...-......|..|.|+|++.+.+.+ ..|.|++=+ ......... +....-.+.
T Consensus 158 ~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~l 236 (302)
T PF14870_consen 158 YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGIL 236 (302)
T ss_dssp EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EE
T ss_pred EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeE
Confidence 77777777664 56654432222223345789999999998876655 778887776 222222111 112223489
Q ss_pred EEEEccCCCCCCCCCccEEEEeecCce
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLIPYF 471 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~~~~ 471 (502)
+++|.+++. +.+++.++.+
T Consensus 237 d~a~~~~~~--------~wa~gg~G~l 255 (302)
T PF14870_consen 237 DLAYRPPNE--------IWAVGGSGTL 255 (302)
T ss_dssp EEEESSSS---------EEEEESTT-E
T ss_pred EEEecCCCC--------EEEEeCCccE
Confidence 999999876 4555555543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.8 Score=38.64 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=53.1
Q ss_pred EcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEE
Q 010754 223 WSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS 302 (502)
Q Consensus 223 ~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd 302 (502)
+..++++|++.+.+|.+++||+.+.+...... ++........ .........|..+.++.+|.-+++-+ +|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~--Si~pll~~~~-~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV--SIAPLLNSSP-VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc--cHHHHhcccc-cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 44468889999999999999999987543220 0000000000 00003456799999999998777655 58889998
Q ss_pred CCCceEEE
Q 010754 303 TNGDLKCT 310 (502)
Q Consensus 303 ~~~~~~~~ 310 (502)
.+-..-..
T Consensus 94 ~~L~~W~~ 101 (219)
T PF07569_consen 94 PDLGCWIR 101 (219)
T ss_pred cccceeEE
Confidence 76544433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.06 E-value=3.4 Score=35.38 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=25.4
Q ss_pred CCeEEEEECCCC------CEEEEEECCCeEEEEECCC
Q 010754 275 KDVTTLDWNGEG------TLLATGSYDGQARIWSTNG 305 (502)
Q Consensus 275 ~~v~~l~~s~~g------~~l~s~~~dg~i~iwd~~~ 305 (502)
..|..++|||.| .+|++.+.+|.|.||...+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999954 4788899999999997543
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.05 E-value=12 Score=41.55 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIAD 246 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~ 246 (502)
....++|+|.-.++|.|...|.|+++-...
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccc
Confidence 445789999999999999999999997654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.61 E-value=4.2 Score=39.97 Aligned_cols=88 Identities=9% Similarity=0.037 Sum_probs=60.2
Q ss_pred EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE----EecCC--------------C
Q 010754 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV----DWRNN--------------V 369 (502)
Q Consensus 308 ~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v----~~~~~--------------~ 369 (502)
...+......+.+++.+|.+++.++...=|.|.++|+.++..++.+++-.+.-..- .-... .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 34455566678999999999998888888999999999988777666543321111 00000 1
Q ss_pred E--EEEEeCCCeEEEEEcCCCcceEEEe
Q 010754 370 S--FATSSTDNMIYVCKIGENRPIKTFA 395 (502)
Q Consensus 370 ~--~~~~~~d~~i~i~d~~~~~~~~~~~ 395 (502)
. ++-+-..|.|-||.++.+..+..+.
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 1 3345567889999998887766664
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.50 E-value=8.7 Score=42.57 Aligned_cols=137 Identities=11% Similarity=0.160 Sum_probs=88.3
Q ss_pred ECCCeEEEEECCC-ceEEEecCccCCeEEEEE--------ecCCCEEEEEecCCeEEEEEcC----CCc---eE--EEEe
Q 010754 293 SYDGQARIWSTNG-DLKCTLSKHKGPIFSLKW--------NKKGDYLLTGSCDKTAIVWDVK----TEE---WK--QQFE 354 (502)
Q Consensus 293 ~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~--------~~~~~~l~s~~~d~~i~~wd~~----~~~---~~--~~~~ 354 (502)
+-|+.+.+|+.+. .....+.+....|..+.. -|.=++++..+.--.|.++-+. ++. .. .++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4578999999774 556666666666666654 2333456665666667776442 111 11 1122
Q ss_pred eccCCeEEEEecCCCEEEEEeCCCeEEEE--EcCCC---c-c----------------eEEEe-cCCCcEEEEEEcCCCC
Q 010754 355 FHSGPTLDVDWRNNVSFATSSTDNMIYVC--KIGEN---R-P----------------IKTFA-GHQGEVNCVKWDPTGS 411 (502)
Q Consensus 355 ~~~~~v~~v~~~~~~~~~~~~~d~~i~i~--d~~~~---~-~----------------~~~~~-~h~~~i~~l~~sp~g~ 411 (502)
.....|.++....++++..+|.||.|+-. ....+ + + +..+. .+..+|..|..+..-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 23456888888888888888888855332 22111 0 0 12223 5677999999998888
Q ss_pred EEEEEeCCCcEEEEECCC
Q 010754 412 LLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 412 ~las~s~dg~i~iwd~~~ 429 (502)
.+.+-+..|+|.+||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 999999999999999875
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=88.88 E-value=15 Score=35.34 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=56.6
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe-------eccCCeEEEEecCC----CEEEEEeC-C-------
Q 010754 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-------FHSGPTLDVDWRNN----VSFATSST-D------- 377 (502)
Q Consensus 317 ~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~v~~~~~----~~~~~~~~-d------- 377 (502)
..+.|+|.|+|..|++ ...|.|++++ ..+.....+. ........++++|+ ..+.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 6699999999 4454322221 12345788888873 44433332 1
Q ss_pred -CeEEEEEcCCC-------c-ceEEEec---CCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 378 -NMIYVCKIGEN-------R-PIKTFAG---HQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 378 -~~i~i~d~~~~-------~-~~~~~~~---h~~~i~~l~~sp~g~~las~s~dg 420 (502)
..|.-|....+ + .+..+.. ....-..|.|.|+|.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23444444333 1 1122222 233466799999998777766544
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.85 E-value=3.8 Score=39.84 Aligned_cols=120 Identities=11% Similarity=0.127 Sum_probs=77.8
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
..++|.++.|++|.+.||.--.|.+|.+.+......... ....-...+..|....|+.+ .-+|.-+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~-------------~~~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE-------------YTQECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH-------------HHHHhccCcceeEEEEEecC-eeEEEEe
Confidence 457999999999999999999999999999854332110 00111122445899999876 4455555
Q ss_pred CCCeEEEEEC--CCceEEEecCccCCeEEEEEecCCCEEEEEe--cCCeEEEEEcCCCc
Q 010754 294 YDGQARIWST--NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEE 348 (502)
Q Consensus 294 ~dg~i~iwd~--~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--~d~~i~~wd~~~~~ 348 (502)
..| +-+|.. ....++....|+..|.-..|.++.+.++.++ ..+++.=+-++++.
T Consensus 131 ~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 131 DQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred cCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 434 555653 3445556677888888889999877655443 34444445555443
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.76 E-value=40 Score=36.78 Aligned_cols=128 Identities=5% Similarity=0.074 Sum_probs=75.4
Q ss_pred CeEEEEEc-CCCceEEEEee--ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEec--CCCcEEEEEEcCCCC
Q 010754 337 KTAIVWDV-KTEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGS 411 (502)
Q Consensus 337 ~~i~~wd~-~~~~~~~~~~~--~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--h~~~i~~l~~sp~g~ 411 (502)
|.++.|++ +.++.+.-+.. -.+++.+++--.+ .+.++....+++||+...++++...- -...|+.+.+. +.
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~--~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~ 987 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQG--RVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA 987 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccceEEeccCC--EEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce
Confidence 44666665 23332222211 2334555554333 56667788999999999887665432 24568888875 56
Q ss_pred EEEEEeCCCcEEEEECC-CCeeEEEeccC--CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 412 LLASCSDDVTAKIWNMK-QDKYVHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 412 ~las~s~dg~i~iwd~~-~~~~~~~~~~h--~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
.++.|...-.+.++..+ .++.+..+... ...|+++.+--.++ +|.+|....+|...+
T Consensus 988 RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~t----------vagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 988 RIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDT----------VAGADRFGNIAVVRI 1047 (1205)
T ss_pred EEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCc----------eeeccccCcEEEEEC
Confidence 77777765555544332 23344444422 23477777766664 677888888887544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.63 E-value=23 Score=33.87 Aligned_cols=118 Identities=13% Similarity=0.187 Sum_probs=68.6
Q ss_pred CceEEEEEcCCCCeEEEEeCCCc------EEEEecCCCC-ccCCCCCCCceeEEEeeecC-ccccCCCCeEEEEECCCCC
Q 010754 216 SEVCACAWSPAGSLLASGSGDST------ARIWTIADGT-SNGGAQNGPLNVLVLKHVKG-RTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~------v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~s~~g~ 287 (502)
+.+..+.+.|++..+++.+.+|. +..+++.... ...... ......+....+ .......+.-+|++.++|.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVT--ILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceE--eccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 67889999977667777788887 5555554311 000000 001111111111 1111122566888877888
Q ss_pred EEEEEECC------CeEEEEECCCceEEEec---------------CccCCeEEEEEecCCCEEEEEec
Q 010754 288 LLATGSYD------GQARIWSTNGDLKCTLS---------------KHKGPIFSLKWNKKGDYLLTGSC 335 (502)
Q Consensus 288 ~l~s~~~d------g~i~iwd~~~~~~~~~~---------------~~~~~v~~l~~~~~~~~l~s~~~ 335 (502)
++++.=.+ ..|..++.++.....+. ..+...-+|+++|+|+.|+++..
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 88777666 78888887765543331 23456889999999997776543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=88.34 E-value=26 Score=34.15 Aligned_cols=146 Identities=13% Similarity=0.061 Sum_probs=78.4
Q ss_pred EEEEEECCCeEEEEECCCce-EEEecCc--cCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc-CCeEEE
Q 010754 288 LLATGSYDGQARIWSTNGDL-KCTLSKH--KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GPTLDV 363 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~-~~~~~~~--~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~v 363 (502)
.++++..+|.|.-.|.++.. +.....- ...+.+-.+..+|+ ++.++.++.++.+|.++|+.+..+.... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 34445677777777766443 2221111 11222222223555 7888889999999998999888777655 111111
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCC---cEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEE
Q 010754 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG---EVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 364 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~---~i~~l~~sp~g~~las~s~--dg~i~iwd~~~~~~~~~ 435 (502)
....+..+..++.++.+...+..++.....+..... .+..--...++ .+..+.. ++.+.-.|..+|.....
T Consensus 149 ~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 149 PVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 223344455555788888888888877655443211 11110011123 3334443 45555566666665544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.09 E-value=12 Score=39.04 Aligned_cols=51 Identities=8% Similarity=0.258 Sum_probs=41.3
Q ss_pred CCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010754 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387 (502)
Q Consensus 336 d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~ 387 (502)
--.|+||+. +|+.+..+....+.+..+.|+.+..+++...+|++++|++-.
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecch
Confidence 346888885 566666665556689999999999999999999999999754
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.06 E-value=12 Score=30.04 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=62.4
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCce--------EEEecCccCCeEEEEEec-----CCCEEEEEecCCeEEEEEcC
Q 010754 279 TLDWNGEGTLLATGSYDGQARIWSTNGDL--------KCTLSKHKGPIFSLKWNK-----KGDYLLTGSCDKTAIVWDVK 345 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~v~~l~~~~-----~~~~l~s~~~d~~i~~wd~~ 345 (502)
.-.|......|++++..|.|.|++..... ...+..-...|++|+--+ ....|+.| ....+..||+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 34565666678888889999999854221 112223445667765433 22455555 45689999997
Q ss_pred CCceEEEEeeccCCeEEEEec----CCCEEEEEeCCCeEEEEEcCCCcce
Q 010754 346 TEEWKQQFEFHSGPTLDVDWR----NNVSFATSSTDNMIYVCKIGENRPI 391 (502)
Q Consensus 346 ~~~~~~~~~~~~~~v~~v~~~----~~~~~~~~~~d~~i~i~d~~~~~~~ 391 (502)
...-+.. +.-...+.++.+- ....++..+.+..|.-||.......
T Consensus 82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred cCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 6653322 2223455555551 1233555555566666665544433
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=88.02 E-value=44 Score=36.34 Aligned_cols=154 Identities=14% Similarity=0.107 Sum_probs=88.9
Q ss_pred CCCCeEEEEEC---C----CCCEEEEEECCCeEEEEECC----------------CceEEEecC---ccCCeEEEEEec-
Q 010754 273 KSKDVTTLDWN---G----EGTLLATGSYDGQARIWSTN----------------GDLKCTLSK---HKGPIFSLKWNK- 325 (502)
Q Consensus 273 ~~~~v~~l~~s---~----~g~~l~s~~~dg~i~iwd~~----------------~~~~~~~~~---~~~~v~~l~~~~- 325 (502)
...+|..|+|. . ..++|++ -....+.|+... ...+..+.. ...+...++|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 35678888887 2 1234444 344566666511 112222221 234678899998
Q ss_pred CCCEEEEEecCCeEEEEEcCCCc-----eEEEEeeccCC----------eEEEEecCCCEEEEEeCCCeEEEEEcCCCcc
Q 010754 326 KGDYLLTGSCDKTAIVWDVKTEE-----WKQQFEFHSGP----------TLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390 (502)
Q Consensus 326 ~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~----------v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~ 390 (502)
+...||+....|...|||+.... .........+. -..|.|.++..-+..+....+.++|+.+...
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ 236 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence 44689999999999999992111 11111111122 2367886654444445667788999988765
Q ss_pred eE-E-EecCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEECCC
Q 010754 391 IK-T-FAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 391 ~~-~-~~~h~~~i~~l~~sp~--g~~las~s~dg~i~iwd~~~ 429 (502)
.. . .......|..+.-+|. +..++-.+ ..|...++..
T Consensus 237 ~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred cchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 33 1 1223467888888876 33333322 3576667665
|
These proteins are found in fungi. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.90 E-value=2.8 Score=25.66 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=27.8
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeeEEEeccCCCcEEEEEE
Q 010754 408 PTGSLLASCS-DDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (502)
Q Consensus 408 p~g~~las~s-~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~ 448 (502)
|++++|.++. .+++|.++|..+++.+..+... ..-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677665544 5889999999999988887753 23345544
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=87.46 E-value=2.8 Score=43.49 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=29.5
Q ss_pred cEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 400 EVNCVKWDP----TGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 400 ~i~~l~~sp----~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
.+..+++++ +..+|++.+.|+++|+||+.+++++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 355566666 67899999999999999999999976653
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=87.23 E-value=14 Score=29.75 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=70.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-----CCCEEEEEEC
Q 010754 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-----EGTLLATGSY 294 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----~g~~l~s~~~ 294 (502)
.-.|......|++++.-|+|.|++..............+..+. ....|++|+--+ +...|+.|+.
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN----------in~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN----------INQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE----------CCCceEEEEEEecCCCCCcCEEEEecc
Confidence 3456666667888888899999987654322211111111111 134577775433 3446776664
Q ss_pred CCeEEEEECCCceEEEecCccCCeEEEEEec---CCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNK---KGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
..+..||+....-.-++.-...|.++.+-. ...-++..+.+..|.-||....+...
T Consensus 73 -t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 73 -TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred -ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 779999987655555555567777777643 12344545556677777765544433
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=87.21 E-value=3.9 Score=42.48 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=45.7
Q ss_pred CCCCEEEEEECCCeEEEEECCC-----ceEE-E-ecC--------------------ccCCeEEEEEec----CCCEEEE
Q 010754 284 GEGTLLATGSYDGQARIWSTNG-----DLKC-T-LSK--------------------HKGPIFSLKWNK----KGDYLLT 332 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~-----~~~~-~-~~~--------------------~~~~v~~l~~~~----~~~~l~s 332 (502)
++...++.+..||.+....... .... . +.. ....+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666888888898887776432 1111 1 111 123455666666 6689999
Q ss_pred EecCCeEEEEEcCCCceEEEEeec
Q 010754 333 GSCDKTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 333 ~~~d~~i~~wd~~~~~~~~~~~~~ 356 (502)
.+.|+++++||+.+++++......
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEETT
T ss_pred EeCCCeEEEEECCCCeEEEEeccc
Confidence 999999999999999997766443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.16 E-value=3.3 Score=40.21 Aligned_cols=157 Identities=12% Similarity=0.041 Sum_probs=94.0
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEec---Ccc----CCeE-EEEEecCCCEEEEEecCCeEEEE-Ec
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---KHK----GPIF-SLKWNKKGDYLLTGSCDKTAIVW-DV 344 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~----~~v~-~l~~~~~~~~l~s~~~d~~i~~w-d~ 344 (502)
..+|..+-..|||+.++.-+. ..+.++++.......-+ ... ..|+ .+..-..|..+++++.||.|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 456778888999998887765 77888886644332111 101 1122 12223356778899999999888 55
Q ss_pred CCCc-----eEEEEeeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 010754 345 KTEE-----WKQQFEFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 345 ~~~~-----~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~ 418 (502)
+.+. .++.++....++..+.-.. ...|++-...|++.++.....+++-.-. --..+..+++||++.+|++-.
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e~- 376 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSED- 376 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccchheeec-
Confidence 4332 1222333333333333322 2337777788888777665554432222 223566789999999998754
Q ss_pred CCcEEEEECCCCeeE
Q 010754 419 DVTAKIWNMKQDKYV 433 (502)
Q Consensus 419 dg~i~iwd~~~~~~~ 433 (502)
.|.|+++.+.+..+.
T Consensus 377 ~gki~~~~l~Nr~Pe 391 (733)
T COG4590 377 QGKIRLAQLENRNPE 391 (733)
T ss_pred CCceEEEEecCCCCC
Confidence 467999988765543
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=86.94 E-value=23 Score=37.45 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCcc
Q 010754 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN 250 (502)
Q Consensus 204 ~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~ 250 (502)
-++.+..|.||. |.+++.+.+-.+++| .+|.|.-|-+......
T Consensus 219 iPkrV~gL~gh~--~~qisvs~~HslvLT--~~g~Vys~GlN~~hqL 261 (1267)
T KOG0783|consen 219 IPKRVPGLIGHK--VIQISVSHTHSLVLT--KFGSVYSWGLNGSHQL 261 (1267)
T ss_pred cccccccccccc--eEEEEeecceeEEEe--ecceEEEeecCccccc
Confidence 344555677776 788888877666554 6899999998875543
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=86.35 E-value=32 Score=33.07 Aligned_cols=145 Identities=8% Similarity=0.020 Sum_probs=70.5
Q ss_pred CCCEEEEEECC-----CeEEEEECCCceEEEecCc-----cCC--eEEEEEecCCCEEEEEecC-----------CeEEE
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDLKCTLSKH-----KGP--IFSLKWNKKGDYLLTGSCD-----------KTAIV 341 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~-----~~~--v~~l~~~~~~~~l~s~~~d-----------~~i~~ 341 (502)
++++++.|+.+ ..+.+||.....-..+... ..+ -.+++. -+++.++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45677777754 3577888776544433221 111 112222 345566666643 25778
Q ss_pred EEcCCCceEEEEeec----cCCeEEEEecCCCEEEEEeCC-------------CeEEEEEcCCCcceEEE-----ecCCC
Q 010754 342 WDVKTEEWKQQFEFH----SGPTLDVDWRNNVSFATSSTD-------------NMIYVCKIGENRPIKTF-----AGHQG 399 (502)
Q Consensus 342 wd~~~~~~~~~~~~~----~~~v~~v~~~~~~~~~~~~~d-------------~~i~i~d~~~~~~~~~~-----~~h~~ 399 (502)
||..+.++...-... ...-..+....+..++.++.+ ..+.+||..+.+-...- .....
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 898877665421110 001112223344455555432 45788888766432211 11111
Q ss_pred cEEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCCee
Q 010754 400 EVNCVKWDPTGSLLASCSDD--------------VTAKIWNMKQDKY 432 (502)
Q Consensus 400 ~i~~l~~sp~g~~las~s~d--------------g~i~iwd~~~~~~ 432 (502)
...++.+ ++++++.|+.. ..|..+|..+.+.
T Consensus 244 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 244 VFAHAVV--GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred eeeeEEE--CCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 1222222 46677777741 2567777766543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=86.19 E-value=52 Score=35.26 Aligned_cols=189 Identities=6% Similarity=-0.033 Sum_probs=93.6
Q ss_pred CeEEEEECCCCCEEEEEECC-----CeEEEEECCCce--EEEecCccCCeEEEEEecCCCEEEEEecC------CeEEEE
Q 010754 276 DVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVW 342 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~d-----g~i~iwd~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------~~i~~w 342 (502)
.+..+.|+|+|++|+.+... ..|++.|+.+.. ...+. ..-..++|.++++.|+.+..+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 47788999999988876433 357888876443 11111 112569999999877655432 368888
Q ss_pred EcCCC--ceEEEEeeccCCeEEEEe-c-CCCEEEEE---eCCCeEEEEEcC--CCcceEEEecCCCcEEEEEEcCCCCEE
Q 010754 343 DVKTE--EWKQQFEFHSGPTLDVDW-R-NNVSFATS---STDNMIYVCKIG--ENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (502)
Q Consensus 343 d~~~~--~~~~~~~~~~~~v~~v~~-~-~~~~~~~~---~~d~~i~i~d~~--~~~~~~~~~~h~~~i~~l~~sp~g~~l 413 (502)
++.++ +-...+........-..+ + ++..++.. ..++.+.+++.. .+.+...+....+....+. +..+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 88877 333344433333321222 3 33333332 234568888843 3333222322222222332 3233333
Q ss_pred EEEeCC---CcEEEEECC-CCeeEEEeccC-C-CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 414 ASCSDD---VTAKIWNMK-QDKYVHDLREH-S-KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 414 as~s~d---g~i~iwd~~-~~~~~~~~~~h-~-~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+....+ ..|...++. .++. ..+..+ . ..|..+.++.+ . .++....++..+++...
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~~-~-------l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFTD-W-------LVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEECC-E-------EEEEEEeCCEEEEEEEc
Confidence 333222 234333444 2222 233334 2 35777777732 1 23333334555666543
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=85.63 E-value=5.3 Score=34.19 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=24.7
Q ss_pred CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 441 KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 441 ~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..|.+++|||.|-+ ......|.+.+.++.+.+|..
T Consensus 86 ~~vv~~aWSP~Gl~-~~~rClLavLTs~~~l~l~~~ 120 (173)
T PF12657_consen 86 SQVVSAAWSPSGLG-PNGRCLLAVLTSNGRLSLYGP 120 (173)
T ss_pred ccEEEEEECCCCCC-CCCceEEEEEcCCCeEEEEec
Confidence 36999999999852 234455666677788888753
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.40 E-value=22 Score=36.19 Aligned_cols=89 Identities=10% Similarity=-0.011 Sum_probs=44.9
Q ss_pred CCCEEEEEECCC---eEEEEECCCceEEEecCccCCe--EEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec-cC
Q 010754 285 EGTLLATGSYDG---QARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-SG 358 (502)
Q Consensus 285 ~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~ 358 (502)
+|++.+.||.++ .+..||..............+. .+++ .-++...+.| |.+.+||..+.++...-... ..
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r 437 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPR 437 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCCc
Confidence 577778877653 4677887655444332221111 1121 2244555555 45778998887765432211 11
Q ss_pred CeEEEEecCCCEEEEEeCC
Q 010754 359 PTLDVDWRNNVSFATSSTD 377 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~~~~d 377 (502)
.-..+....+..+++||.+
T Consensus 438 ~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 438 DNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred cccEEEEECCEEEEECCcC
Confidence 1223333455556666543
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=84.66 E-value=18 Score=33.68 Aligned_cols=93 Identities=17% Similarity=0.331 Sum_probs=57.8
Q ss_pred CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE------CCCeEEEEECCCceEEE
Q 010754 237 STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS------YDGQARIWSTNGDLKCT 310 (502)
Q Consensus 237 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~------~dg~i~iwd~~~~~~~~ 310 (502)
..|++||..+.+... ....-.+.|++|.|..+.++++.|. ....+..||..+.....
T Consensus 16 ~~lC~yd~~~~qW~~-----------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~ 78 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-----------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS 78 (281)
T ss_pred CEEEEEECCCCEeec-----------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee
Confidence 458899987765321 1111246799999997777777775 34578889988777666
Q ss_pred ecCc-----cCCeEEEEEec-CCC-EEEEEe-cCC--eEEEEEcCC
Q 010754 311 LSKH-----KGPIFSLKWNK-KGD-YLLTGS-CDK--TAIVWDVKT 346 (502)
Q Consensus 311 ~~~~-----~~~v~~l~~~~-~~~-~l~s~~-~d~--~i~~wd~~~ 346 (502)
+... .++|..+.+.. ++. ..++|. .++ .|..||-..
T Consensus 79 ~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 79 LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 6552 47888888753 333 444443 233 466665433
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=84.07 E-value=29 Score=30.55 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=35.6
Q ss_pred CEEEEEECCCeEEEEECCC---ceEEEecCccCCeEEEEEecCCCEEEEEec
Q 010754 287 TLLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 335 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~ 335 (502)
..|+.+...+.|.+|++.. .....+..- +.|..+.++..|+||+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 4555556678899999773 344555544 78999999999999998543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.62 E-value=43 Score=32.17 Aligned_cols=97 Identities=7% Similarity=0.084 Sum_probs=57.6
Q ss_pred ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
..+.+.++.+.+++.++..+..|.+..-.-..++.-... ..-...++++.+.++++.++.+ ..|.+++=..+.+..-.
T Consensus 171 ~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 171 AAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred CcceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 345678888888888888788887654211122211112 2234678999999999887765 45766432334333222
Q ss_pred Eecc----CCCcEEEEEEccCCC
Q 010754 435 DLRE----HSKEIYTIRWSPTGS 453 (502)
Q Consensus 435 ~~~~----h~~~i~~v~~sp~g~ 453 (502)
.... ....+.+++|.|++.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~ 272 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGE 272 (334)
T ss_pred cccCCccccccceeeEEEcCCCC
Confidence 2221 223578899999776
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.36 E-value=5 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=20.1
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 010754 396 GHQGEVNCVKWDPTGSLLASCSD-D--VTAKIW 425 (502)
Q Consensus 396 ~h~~~i~~l~~sp~g~~las~s~-d--g~i~iw 425 (502)
..........|+|||+.|+-++. + |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34456778899999998876654 4 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=82.72 E-value=21 Score=34.79 Aligned_cols=108 Identities=10% Similarity=-0.017 Sum_probs=64.7
Q ss_pred EEEEEecCCeEEEEEcCCCceEEEEeecc--CCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC-CcEEEEE
Q 010754 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVK 405 (502)
Q Consensus 329 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-~~i~~l~ 405 (502)
.+.++..+|.|.-.|..++..+....... ..+..-....++.++.++.++.++.+|..+++.+..+.... ..+..-.
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~ 149 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPP 149 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCc
Confidence 44455677778888887777554332221 11111112226778999999999999999998888777655 1122222
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 406 WDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 406 ~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
.-.++ .+..++.+|.+...|..+++......
T Consensus 150 v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 150 VVGDG-TVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred EEcCc-EEEEecCCCeEEEEEccCCcEEEEEe
Confidence 22233 33334467788888877777655543
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=82.01 E-value=71 Score=33.52 Aligned_cols=210 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCC---eEEEEeCCCc-EEEEecCCC---CccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 215 TSEVCACAWSPAGS---LLASGSGDST-ARIWTIADG---TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 215 ~~~V~~~~~~p~~~---~l~sgs~dg~-v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+..|.||....... +.+.|-.++. -++-.+..+ ...............++. ...|..+.|.++++
T Consensus 71 t~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~kl--------~~kvv~Ik~~~~~~ 142 (670)
T PF10395_consen 71 TTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELKL--------DDKVVGIKFSSDGK 142 (670)
T ss_pred CceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEEc--------ccceEEEEEecCCC
Q ss_pred EEEEEECCCeEEEEEC---------CCceEEEe-cCccCCeEEEEEecCCCEEEEEec-CC---eEEEEEc--CCCceEE
Q 010754 288 LLATGSYDGQARIWST---------NGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSC-DK---TAIVWDV--KTEEWKQ 351 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~---------~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~-d~---~i~~wd~--~~~~~~~ 351 (502)
.+++...+|.|.+||. .-...... ..+..-|.....-....++++.+. ++ ..+++.+ .......
T Consensus 143 ~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~E 222 (670)
T PF10395_consen 143 IIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFE 222 (670)
T ss_pred EEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEE
Q ss_pred E----EeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecC-------CCcEEEEEEcCCCCEEEEEeCCC
Q 010754 352 Q----FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-------QGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 352 ~----~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-------~~~i~~l~~sp~g~~las~s~dg 420 (502)
. .......-..+++..+..+.. .++.|.+|++..-+..+++.-. ...|.-...+++.-+| +.++
T Consensus 223 l~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLL---s~~n 297 (670)
T PF10395_consen 223 LSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLL---SVNN 297 (670)
T ss_pred eehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEE---EcCC
Q ss_pred cEEEEECCCCeeEEEec
Q 010754 421 TAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~ 437 (502)
.|++.|+.-...+..+.
T Consensus 298 kIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 298 KIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEEEeehhhhhhhhhh
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=81.70 E-value=64 Score=32.81 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=63.7
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCC---eEEEEEecCCCEEEEEec-------------CCeEEEEE
Q 010754 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP---IFSLKWNKKGDYLLTGSC-------------DKTAIVWD 343 (502)
Q Consensus 280 l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---v~~l~~~~~~~~l~s~~~-------------d~~i~~wd 343 (502)
+...++|.+++... +.+..+|..|+........... =..+.+.|+|++|+.+.. .-.|..+|
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd 230 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD 230 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence 55668888877655 8899999888866554332211 345677899999887772 12466677
Q ss_pred cCCCceEEEEeecc---------------------------CCeEEEEecC-CCEEEEEeCC-CeEEEEEcCCCcceEEE
Q 010754 344 VKTEEWKQQFEFHS---------------------------GPTLDVDWRN-NVSFATSSTD-NMIYVCKIGENRPIKTF 394 (502)
Q Consensus 344 ~~~~~~~~~~~~~~---------------------------~~v~~v~~~~-~~~~~~~~~d-~~i~i~d~~~~~~~~~~ 394 (502)
.+|+.+..+.... --+.++.+.+ ++.+++++.. ..|...|.++++....+
T Consensus 231 -~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 231 -PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp -TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred -CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence 7777766654210 0257777755 5666666654 48888888888777666
Q ss_pred ecC
Q 010754 395 AGH 397 (502)
Q Consensus 395 ~~h 397 (502)
..+
T Consensus 310 g~~ 312 (477)
T PF05935_consen 310 GPP 312 (477)
T ss_dssp S-S
T ss_pred CCC
Confidence 544
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.66 E-value=15 Score=36.53 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=53.2
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecC---ccccCCCCeEEEEECCCC---CEE
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG---RTNEKSKDVTTLDWNGEG---TLL 289 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~s~~g---~~l 289 (502)
-.|..+..++.|..++-.+.+|.+.++=-........+..+...+.+...... ......-.+..++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 45888999999999999999997665432211111122222211211111110 011122347788999975 678
Q ss_pred EEEECCCeEEEEECC
Q 010754 290 ATGSYDGQARIWSTN 304 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~ 304 (502)
..-+.|..||+|+..
T Consensus 184 ~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLS 198 (741)
T ss_pred EEEecCcEEEEEecC
Confidence 888889999999965
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=81.65 E-value=64 Score=32.75 Aligned_cols=146 Identities=8% Similarity=0.021 Sum_probs=73.7
Q ss_pred CCCEEEEEECC-----CeEEEEECCCceEEEecCc---cCC--eEEEEEecCCCEEEEEecCC-----eEEEEEcCCCce
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDLKCTLSKH---KGP--IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEW 349 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~---~~~--v~~l~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~ 349 (502)
++.+.+.|+.+ ..+.+||+.......+... ..+ -.++.. -+++.++.|+.++ .+..||+.+.++
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45666777755 3577888776544433221 111 112222 2455666666543 467888877765
Q ss_pred EEEEee----ccCCeEEEEecCCCEEEEEeCC----CeEEEEEcCCCcceEEEe-----cCCCcEEEEEEcCCCCEEEEE
Q 010754 350 KQQFEF----HSGPTLDVDWRNNVSFATSSTD----NMIYVCKIGENRPIKTFA-----GHQGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 350 ~~~~~~----~~~~v~~v~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~-----~h~~~i~~l~~sp~g~~las~ 416 (502)
...-.. ....-..+....+..++.++.+ ..+.+||+.+.+-...-. .......++.+ ++++++.|
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~G 384 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFG 384 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEEC
Confidence 432110 0000112222345566666654 458889988765322111 01111222222 56677777
Q ss_pred eCC--------------CcEEEEECCCCeeE
Q 010754 417 SDD--------------VTAKIWNMKQDKYV 433 (502)
Q Consensus 417 s~d--------------g~i~iwd~~~~~~~ 433 (502)
+.+ ..+.++|..+.+..
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~ 415 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWE 415 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEE
Confidence 753 24788888776653
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=81.64 E-value=0.94 Score=39.86 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=44.4
Q ss_pred CCCcchhhHHHHHHHHhcCCcchhhcccccccCccCCCCCCCCC-chhHHHHHHhhhhhhhhhh
Q 010754 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVP-PRALITFVQKGLQYLEMEA 65 (502)
Q Consensus 3 ~lts~evn~li~rYlqE~g~~~sA~~~~~e~~~~~~~~~~~~ip-~~aLv~l~qkgl~y~~~e~ 65 (502)
++..+++|-||--||---||..+|-+|++|+.+..+.+.-..+- .-....+|+.|=.=..+|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~ 86 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEK 86 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHH
Confidence 57889999999999999999999999999999997533212222 2234445566644444443
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=81.57 E-value=50 Score=31.46 Aligned_cols=93 Identities=11% Similarity=0.228 Sum_probs=47.6
Q ss_pred CCCEEEEEECC-----CeEEEEECCCceEEEecCcc--CCeEEEEEecCCCEEEEEecCC----eEEEEEcCCCceEEEE
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGSCDK----TAIVWDVKTEEWKQQF 353 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~ 353 (502)
++++.+.|+.. ..+..||+.......+.... ......+..-+++..+.|+.++ .+.+||..+.++...-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 46666777642 35778887755444333211 1112222233566777777654 3568898887764322
Q ss_pred eec--cCC-----eEEEEecCCCEEEEEeCC
Q 010754 354 EFH--SGP-----TLDVDWRNNVSFATSSTD 377 (502)
Q Consensus 354 ~~~--~~~-----v~~v~~~~~~~~~~~~~d 377 (502)
... ..+ ...+....+..++.|+.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 110 011 122333455667777765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=81.30 E-value=87 Score=34.10 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=96.0
Q ss_pred CCCceEEEEEc---C--C--CCeEEEEeCCCcEEEEecCCCCccC--CCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 214 HTSEVCACAWS---P--A--GSLLASGSGDSTARIWTIADGTSNG--GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 214 H~~~V~~~~~~---p--~--~~~l~sgs~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
-..+|..|+|. . + ..+|++= ....+.|+...-.+... ......+....+..+..... ...+...++|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t-gg~~~aDv~FnP 155 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT-GGFPHADVAFNP 155 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhc-CCCccceEEecc
Confidence 45778888887 3 1 2355544 44667777622111100 00111112222222222211 234678999998
Q ss_pred -CCCEEEEEECCCeEEEEECCC------ceEEEecCccC----------CeEEEEEecCCCEEEEEecCCeEEEEEcCCC
Q 010754 285 -EGTLLATGSYDGQARIWSTNG------DLKCTLSKHKG----------PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE 347 (502)
Q Consensus 285 -~g~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~----------~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~ 347 (502)
+...||+....|...||++.+ ........+.+ .-..+.|.++.+.|++++. ..+.++|+.+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 566999999999999999821 11111111122 2347889888788888754 57899999877
Q ss_pred ceEEEE--eeccCCeEEEEecCC---CEEEEEeCCCeEEEEEcCC
Q 010754 348 EWKQQF--EFHSGPTLDVDWRNN---VSFATSSTDNMIYVCKIGE 387 (502)
Q Consensus 348 ~~~~~~--~~~~~~v~~v~~~~~---~~~~~~~~d~~i~i~d~~~ 387 (502)
.....+ ......|.++.-++. ..|+. +...|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL--Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFIL--TSKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEE--ecCeEEEEEccC
Confidence 653311 223456888887666 33444 336777777776
|
These proteins are found in fungi. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.76 E-value=10 Score=23.08 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=23.8
Q ss_pred cCCCEEEEEe-cCCeEEEEEcCCCceEEEEee
Q 010754 325 KKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 325 ~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~ 355 (502)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666655 478999999998888777765
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 502 | ||||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-22 | ||
| 2xtc_A | 90 | Structure Of The Tbl1 Tetramerisation Domain Length | 2e-18 | ||
| 2xtd_A | 71 | Structure Of The Tbl1 Tetramerisation Domain Length | 3e-18 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-18 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-13 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-15 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-15 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-12 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-14 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 4e-12 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-14 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-12 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 1e-14 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 5e-12 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-14 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 5e-12 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-14 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-12 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-14 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-12 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-14 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-12 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-14 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 7e-12 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 2e-14 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-12 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-14 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-12 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-14 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-12 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-14 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-12 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-14 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-12 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-14 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-10 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-14 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-10 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 5e-14 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-12 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-11 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-11 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-11 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 6e-11 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-09 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 6e-11 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 6e-11 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 6e-11 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 6e-11 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 7e-11 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-10 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-09 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-10 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-10 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-10 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-10 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 4e-10 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 1e-09 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 3e-09 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 3e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 4e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 6e-09 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 8e-09 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-08 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-04 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-08 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-08 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-06 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 8e-08 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-06 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 9e-08 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-06 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 9e-08 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-06 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 9e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-06 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-07 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 1e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-07 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 3e-06 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 3e-06 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-06 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-06 | ||
| 3mmy_A | 368 | Structural And Functional Analysis Of The Interacti | 7e-06 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 8e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 1e-05 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-05 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-05 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 4e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 4e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 9e-05 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 3e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-04 | ||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 5e-04 | ||
| 3dxk_C | 372 | Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN | 5e-04 | ||
| 1k8k_C | 372 | Crystal Structure Of Arp23 COMPLEX Length = 372 | 6e-04 |
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|2XTC|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 90 | Back alignment and structure |
|
| >pdb|2XTD|A Chain A, Structure Of The Tbl1 Tetramerisation Domain Length = 71 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372 | Back alignment and structure |
|
| >pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.98 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.94 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.86 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.86 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.85 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.84 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.84 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.8 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.79 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.78 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.77 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.77 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.75 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.75 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.71 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.71 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.71 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.7 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.68 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.68 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.67 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.67 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.67 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.66 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.65 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.64 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.62 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.62 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.62 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.61 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.58 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.56 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.56 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.56 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.51 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.5 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.49 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.49 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.48 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.46 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.45 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.45 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.44 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.43 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.42 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.41 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.4 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.39 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.35 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.33 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.3 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.23 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.19 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.19 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.17 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.16 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.14 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.14 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.12 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.06 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.98 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.97 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.94 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.94 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.93 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.93 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.91 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.9 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.89 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.88 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.88 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.85 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.78 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.78 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.77 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.74 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.73 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.71 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.7 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.68 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.67 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.66 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.66 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.62 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.62 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.6 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.6 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.6 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.55 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.52 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.41 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.4 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.39 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.37 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.37 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.36 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.33 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.3 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.3 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.28 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.25 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.23 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.2 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.16 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.12 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.12 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.11 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.11 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.09 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.08 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.07 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.05 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.04 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.04 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.0 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.99 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.95 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.92 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.91 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.91 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.89 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.86 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.86 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.86 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.83 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.79 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.75 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.73 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.72 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.65 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 97.64 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.61 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.6 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.53 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.48 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.43 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.31 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.1 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.06 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.01 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.93 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.87 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.84 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.72 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.65 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.54 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.45 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.44 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.33 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.2 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.13 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.11 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.98 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.89 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.86 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 95.68 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.62 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.6 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.49 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.44 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.35 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.18 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.07 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 95.03 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.96 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 94.88 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.85 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.38 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.35 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.34 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.25 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.25 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 94.12 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 93.98 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 93.79 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.57 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.23 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 93.23 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 93.16 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 93.14 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 93.05 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.76 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.45 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 90.35 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.24 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 88.91 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.56 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 80.56 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=358.61 Aligned_cols=266 Identities=22% Similarity=0.375 Sum_probs=237.6
Q ss_pred CCCcccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 187 PEPMDIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
|....+++.+.+..+.++ ......+.+|.+.|.+++|+|++++|++|+.|++|++||+.+....
T Consensus 118 p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~------------ 185 (410)
T 1vyh_C 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI------------ 185 (410)
T ss_dssp SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE------------
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee------------
Confidence 333345555555555553 3457889999999999999999999999999999999999875532
Q ss_pred EeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEE
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~ 341 (502)
....+|...|.+++|+|++++|++|+.|+.|++||+. +.....+.+|...|.++.|+|++.+|++|+.|++|++
T Consensus 186 -----~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~v 260 (410)
T 1vyh_C 186 -----RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260 (410)
T ss_dssp -----ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -----EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEE
Confidence 2234567889999999999999999999999999986 5667788999999999999999999999999999999
Q ss_pred EEcCCCceEEEEeeccCCeEEEEecC---------------------CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCc
Q 010754 342 WDVKTEEWKQQFEFHSGPTLDVDWRN---------------------NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~~v~~v~~~~---------------------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~ 400 (502)
||++++.+...+..|...|.++.|++ +..+++|+.|+.|++||++++.++.++.+|...
T Consensus 261 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 340 (410)
T 1vyh_C 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340 (410)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCc
Confidence 99999999999999999999999987 346999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|++++|+|+|++|++|+.||+|+|||+.+++++..+.+|...|++++|+|++. .+++++.|+.+++|.+
T Consensus 341 v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-------~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-------YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSS-------CEEEEETTSEEEEEC-
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCC-------EEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999999999999999999999999999998 7889999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=316.15 Aligned_cols=263 Identities=22% Similarity=0.380 Sum_probs=233.3
Q ss_pred ccccCCCCceeeeCC---Cc---eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEe
Q 010754 191 DIATTSASESFEIPN---SD---VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~---~~---~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 264 (502)
.+++++.+..++++. .. ...+.+|...|.+++|+|++.++++|+.|++|++||+.+++...
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~------------- 116 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK------------- 116 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-------------
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE-------------
Confidence 355566665555542 22 34689999999999999999999999999999999998865321
Q ss_pred eecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 265 ~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
.+ ..+...+.+++|+|++++|++|+.||.|++|++. +.....+..|...|.+++|+|++++|++|+.||.|++||
T Consensus 117 ~~----~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd 192 (321)
T 3ow8_A 117 SI----DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192 (321)
T ss_dssp EE----ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EE----eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 11 2345678899999999999999999999999986 456667788899999999999999999999999999999
Q ss_pred cCCCceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
+++++.+..+..|..+|.+++|+|++ .+++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|++|+.||+|
T Consensus 193 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v 272 (321)
T 3ow8_A 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSV 272 (321)
T ss_dssp TTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 99999999999999999999998865 58899999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+|||+.+++++..+.+|...|++++|+|+|. .|++++.|+.+++|++.
T Consensus 273 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~-------~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS-------KIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTSS-------EEEEEETTCCEEEEECC
T ss_pred EEEeCCCCEEEEEEcCCCCcEEEEEECCCCC-------EEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999998 78888999999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=309.12 Aligned_cols=246 Identities=21% Similarity=0.328 Sum_probs=219.9
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..+++.+|.+.|++++|+|++++|++|+.||+|++||+.++... . ....|...|.+++|+|++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~-------------~----~~~~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-------------R----SIQVTETPVRAGKFIARK 67 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-------------E----EEECCSSCEEEEEEEGGG
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee-------------E----EeeccCCcEEEEEEeCCC
Confidence 45789999999999999999999999999999999999876421 1 122456789999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~ 364 (502)
++|++|+.|+.|++||+. +.....+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 999999999999999976 5677788999999999999999999999999999999999887 45667888999999999
Q ss_pred ecCC--CEEEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEeccC
Q 010754 365 WRNN--VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 365 ~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp--~g~~las~s~dg~i~iwd~~~~~~~~~~~~h 439 (502)
|+|. ..|++|+.|+.|++||++...+...+. +|...+..+.|+| ++.+|++|+.||+|+|||+++++++..+.+|
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h 227 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence 9873 579999999999999999887766664 4567899999987 7789999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
...|.+++|+|++. .+++++.|+.+++|+.
T Consensus 228 ~~~v~~~~~~p~~~-------~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 228 MSNVSFAVFHPTLP-------IIISGSEDGTLKIWNS 257 (304)
T ss_dssp SSCEEEEEECSSSS-------EEEEEETTSCEEEEET
T ss_pred CCCEEEEEECCCCC-------EEEEEcCCCeEEEEEC
Confidence 99999999999998 7888889999999974
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=323.19 Aligned_cols=245 Identities=24% Similarity=0.379 Sum_probs=226.1
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
...+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++.. ....+|...|++++|+|+++
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-----------------~~l~~h~~~V~~v~~~~~~~ 163 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-----------------RTLKGHTDSVQDISFDHSGK 163 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-----------------EEECCCSSCEEEEEECTTSS
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEeccCCcEEEEEEcCCCC
Confidence 4568899999999999999999999999999999999887632 12245678899999999999
Q ss_pred EEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 288 LLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
+|++|+.||.|++||+.+ .....+.+|...|.+++|+|++++|++|+.|++|++||++++.++..+.+|...+.++.|+
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~ 243 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC
Confidence 999999999999999875 5667888999999999999999999999999999999999999999999999999999997
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC--------------------CCEEEEEeCCCcEEEE
Q 010754 367 NN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT--------------------GSLLASCSDDVTAKIW 425 (502)
Q Consensus 367 ~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~--------------------g~~las~s~dg~i~iw 425 (502)
++ ..+++++.|+.|++||+.++.....+.+|...|.+++|+|+ |.+|++|+.||+|++|
T Consensus 244 ~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw 323 (410)
T 1vyh_C 244 QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323 (410)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence 75 45889999999999999999999999999999999999996 6799999999999999
Q ss_pred ECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 426 d~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|++++.++..+.+|...|++++|+|+|. .+++++.|+.+++|+.
T Consensus 324 d~~~~~~~~~~~~h~~~v~~v~~~~~g~-------~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 324 DVSTGMCLMTLVGHDNWVRGVLFHSGGK-------FILSCADDKTLRVWDY 367 (410)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSS-------CEEEEETTTEEEEECC
T ss_pred ECCCCceEEEEECCCCcEEEEEEcCCCC-------EEEEEeCCCeEEEEEC
Confidence 9999999999999999999999999998 7888999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=310.84 Aligned_cols=244 Identities=15% Similarity=0.225 Sum_probs=208.0
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s 291 (502)
..|...|.+++|+|++ .|++|+.||+|+|||+.+++... .......+|...|++++|+|+|++|++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~-------------~~~~~~~~H~~~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLI-------------VSKFCKYEHDDIVSTVSVLSSGTQAVS 144 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCE-------------EEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCcee-------------EeeccccCCCCCEEEEEECCCCCEEEE
Confidence 3466789999999985 68899999999999998876421 111223467889999999999999999
Q ss_pred EECCCeEEEEECC-CceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEEee--ccCCeEEEEecC
Q 010754 292 GSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRN 367 (502)
Q Consensus 292 ~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~v~~~~ 367 (502)
|+.||.|++||+. +..+..+.+|...|.+++|+|++ .+|++++.|++|++||+++++....+.. +...+.+++|++
T Consensus 145 gs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 145 GSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred EeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecC
Confidence 9999999999986 56778899999999999999988 4789999999999999999998877643 455789999976
Q ss_pred C--CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE
Q 010754 368 N--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (502)
Q Consensus 368 ~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 444 (502)
. ..+++|+.|+.|++||+++++++.++.+|...|++++|+|++ ++||+|+.||+|+|||+.+++++ .+.+|...|+
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~ 303 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVR 303 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEE
T ss_pred CCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEE
Confidence 3 468899999999999999999999999999999999999998 58999999999999999998865 5678999999
Q ss_pred EEEEccCCCCCCCCCccEE-EEeecCceEEEEee
Q 010754 445 TIRWSPTGSGTNNPNQQLI-LARLIPYFLYWICS 477 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~-las~~~~~~iw~~~ 477 (502)
+++|+|+|. .++ +++.|+.+++|...
T Consensus 304 ~v~~sp~~~-------~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 304 DATWSPLNH-------SLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEECSSST-------TEEEEEETTSCEEEEECC
T ss_pred EEEEeCCCC-------eEEEEEcCCCeEEEEECC
Confidence 999999987 444 67779999999764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=307.55 Aligned_cols=263 Identities=20% Similarity=0.350 Sum_probs=223.8
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE--------------------Ee
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV--------------------LK 264 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~--------------------~~ 264 (502)
......|++|.+.|++++|+|++++|++|+.||+|+|||+.++.....+..+...+.. +.
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3456889999999999999999999999999999999999876543322111110000 00
Q ss_pred ---------eecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEe
Q 010754 265 ---------HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334 (502)
Q Consensus 265 ---------~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~ 334 (502)
.......+|...|.++.|++++. +++++.||.|++||+. +.....+.+|...|.+++|+|++++|++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 01112346778899999988765 8899999999999976 566778889999999999999999999999
Q ss_pred cCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCCC
Q 010754 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGS 411 (502)
Q Consensus 335 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g~ 411 (502)
.|++|++||++++.++..+..|...|.+++|+|+ ..|++++.|+.|++||+++++.+..+..+ ...|++++|+|+|+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 9999999999999999999999999999999875 56899999999999999999888777532 34799999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 412 LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 412 ~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+|++|+.||.|++||+.+++.+..+.+|..+|.+++|+|+|. .+++++.|+.+++|+
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~-------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-------AVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS-------CEEEEETTSCEEEEC
T ss_pred EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCC-------EEEEEcCCccEEecC
Confidence 999999999999999999999999999999999999999998 788899999999994
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=308.84 Aligned_cols=263 Identities=21% Similarity=0.380 Sum_probs=224.2
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCc-----------------------eeEE
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPL-----------------------NVLV 262 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~-----------------------~~~~ 262 (502)
...+.|+||.+.|++++|+|++++|+||+.||+|+|||..++........+.. .+..
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45688999999999999999999999999999999999877653221111100 0000
Q ss_pred Ee--------eecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec--CCCEEE
Q 010754 263 LK--------HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLL 331 (502)
Q Consensus 263 ~~--------~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~--~~~~l~ 331 (502)
+. ........|...|.+++|+|++..|++|+.||.|++||++ +.....+.+|...|.+++|+| ++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 00 0011223578889999999999999999999999999986 566778899999999999987 568999
Q ss_pred EEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcC
Q 010754 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDP 408 (502)
Q Consensus 332 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp 408 (502)
+|+.||+|++||+++++++..+..|...|.+++|+|+ ..|++++.|++|++||++.+..+..+..+ ...+++++|+|
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~ 294 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL 294 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC
Confidence 9999999999999999999999999999999999875 56899999999999999998887777644 34789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 409 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 409 ~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+|++|++|+.|+.|+|||+.+++.+..+.+|..+|++++|+|+|. .|++++.|+.+++|.
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~-------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGT-------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-------CEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCC-------EEEEEcCCCCEEecC
Confidence 999999999999999999999999999999999999999999998 788899999999994
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=305.25 Aligned_cols=247 Identities=17% Similarity=0.346 Sum_probs=222.1
Q ss_pred eEEeccCCCceEEEEEcCC----CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 208 VTILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~----~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
.+.+++|.+.|++++|+|+ +.+|+||+.|++|+||++.+.... ......+|...|.+++|+
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~---------------~~~~l~gh~~~v~~~~~~ 89 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD---------------LQWSLEGHQLGVVSVDIS 89 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE---------------EEEEECCCSSCEEEEEEC
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee---------------eeeeeccCCCCEEEEEEC
Confidence 4667899999999999985 569999999999999998764310 112235678899999999
Q ss_pred CCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 284 GEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
+++.++++|+.|+.|++||+. +.....+..|...+.+++|+|++++|++++.|+.|++||+++++....+..+...+.+
T Consensus 90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 999999999999999999986 4666778888899999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 363 VDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 363 v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
++|+|++ .+++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.||.|+|||+++++++..+.+|..
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 9998765 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.|.+++|+|+|. .+++++.|+.+++|+.
T Consensus 250 ~v~~~~~sp~~~-------~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 250 WVLNVAFCPDDT-------HFVSSSSDKSVKVWDV 277 (321)
T ss_dssp CEEEEEECTTSS-------EEEEEETTSCEEEEET
T ss_pred ceEEEEECCCCC-------EEEEEeCCCcEEEEeC
Confidence 999999999998 7888999999999974
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=296.95 Aligned_cols=248 Identities=25% Similarity=0.400 Sum_probs=210.8
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC--
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-- 285 (502)
+.++.+|.+.|++++|+|+|++||+|+.|++|+||++.+.... ......+|...|++++|+++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~---------------~~~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK---------------LIDTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC---------------CCEEECCCSSCEEEEEECCGGG
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE---------------EEEEEccccCCeEEEEecCCCc
Confidence 3568899999999999999999999999999999998753210 11223467889999999874
Q ss_pred CCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCCc--eEEEEeeccC
Q 010754 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHSG 358 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~ 358 (502)
+++|++|+.||+|+|||+... ....+..|...|.+++|+|+ +.+|++++.|++|++||++++. ....+..|..
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 899999999999999998753 45667889999999999997 8899999999999999998763 2456778999
Q ss_pred CeEEEEecCC--------------CEEEEEeCCCeEEEEEcCCCc----ceEEEecCCCcEEEEEEcCCC---CEEEEEe
Q 010754 359 PTLDVDWRNN--------------VSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTG---SLLASCS 417 (502)
Q Consensus 359 ~v~~v~~~~~--------------~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~i~~l~~sp~g---~~las~s 417 (502)
.+.++.|+|. ..|++++.|+.|++||++++. ....+.+|...|.+++|+|++ .+||+|+
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s 226 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE
Confidence 9999999885 479999999999999998876 567889999999999999985 8999999
Q ss_pred CCCcEEEEECCCCe---eEEEe--ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 418 DDVTAKIWNMKQDK---YVHDL--REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 418 ~dg~i~iwd~~~~~---~~~~~--~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.|++|+|||+++.. ....+ ..|...|++++|+|+|. .|++++.|+.+++|...
T Consensus 227 ~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------CEEEEETTSCEEEEEEC
T ss_pred CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC-------EEEEEcCCCcEEEEEEC
Confidence 99999999997643 12233 46888999999999998 78888889999999754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=295.46 Aligned_cols=248 Identities=23% Similarity=0.360 Sum_probs=215.6
Q ss_pred eEEeccCCCceEEEEEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..+|.||.+.|++++|+|++ ++|++|+.|++|++|++...... .........+|...|++++|+|+|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~------------~~~~~~~~~~h~~~v~~~~~s~dg 77 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK------------FGVPVRSFKGHSHIVQDCTLTADG 77 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE------------EEEEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc------------ccccceEEeCCcccEEEEEECCCC
Confidence 46789999999999999964 89999999999999998643210 011122345678899999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
++|++|+.|+.|++||+. +.....+.+|...|.+++|+|++.+|++|+.|++|++||++ +.++..+..|...+.++.|
T Consensus 78 ~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~ 156 (319)
T 3frx_A 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRV 156 (319)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEE
Confidence 999999999999999986 56677889999999999999999999999999999999986 5677888899999999999
Q ss_pred cCCC-------EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 366 RNNV-------SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 366 ~~~~-------~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
.+.. .+++++.|+.|++||+.+.+....+.+|...|++++|+|+|++|++|+.||.|+|||+.+++++..+..
T Consensus 157 ~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 236 (319)
T 3frx_A 157 VPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236 (319)
T ss_dssp CCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC
Confidence 7743 699999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+ .+|.+++|+|+|. ++.++.+..+++|...
T Consensus 237 ~-~~v~~~~~sp~~~--------~la~~~~~~i~v~~~~ 266 (319)
T 3frx_A 237 Q-DEVFSLAFSPNRY--------WLAAATATGIKVFSLD 266 (319)
T ss_dssp C-SCEEEEEECSSSS--------EEEEEETTEEEEEEET
T ss_pred C-CcEEEEEEcCCCC--------EEEEEcCCCcEEEEeC
Confidence 4 5899999999987 4555556778898653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=301.89 Aligned_cols=250 Identities=30% Similarity=0.482 Sum_probs=214.9
Q ss_pred ceEEeccCCC-ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTS-EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~-~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..+.+|.+ .|++++|+|+|++||+|+.|++|+||++.++... . ......+|...|++++|+|+
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~-----------~---~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI-----------C---KSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE-----------E---EEEECSSCSSCEEEEEECTT
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce-----------e---eeeeccccCCcEEEEEECCC
Confidence 4678899998 9999999999999999999999999998765321 0 01112467789999999999
Q ss_pred CCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc---eEEEEeeccCC
Q 010754 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEFHSGP 359 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~ 359 (502)
|++|++|+.|+.|++|+.... ....+.+|...|.+++|+|++++|++|+.|++|++||++++. ++..+..|...
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 999999999999999997643 466788999999999999999999999999999999998764 45667789999
Q ss_pred eEEEEecCCC-EEEEEeCCCeEEEEEcCCCc--ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------
Q 010754 360 TLDVDWRNNV-SFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ------- 429 (502)
Q Consensus 360 v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~------- 429 (502)
|.+++|+|++ .+++++.|+.|++||...+. +..++.+|...|++++|+|+|++|++|+.||+|+||+...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccc
Confidence 9999998764 58999999999999998875 4578899999999999999999999999999999999632
Q ss_pred --------CeeEEEecc-CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 430 --------DKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 430 --------~~~~~~~~~-h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.+++..+.+ |...|++++|+|++. .+++++.|+.+++|...
T Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-------~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-------ALATACGDDAIRVFQED 282 (345)
T ss_dssp CCC---CEEEEEEEECSSCSSCEEEEEECTTTC-------CEEEEETTSCEEEEEEC
T ss_pred eeeccCCccceeEEecCCCCCcEEEEEEecCCC-------EEEEEeCCCeEEEEEeC
Confidence 234555654 888999999999998 78899999999999753
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=291.88 Aligned_cols=267 Identities=21% Similarity=0.251 Sum_probs=225.3
Q ss_pred CCCCcccccCCCCceeeeCC----CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeE
Q 010754 186 GPEPMDIATTSASESFEIPN----SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL 261 (502)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~----~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~ 261 (502)
.|....+++.+.+..+.++. ..+..+.+|..+|.+++|+|++++|++|+.|++|++||+.+++..
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~----------- 90 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV----------- 90 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE-----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEE-----------
Confidence 34444555665566555542 346788999999999999999999999999999999999887532
Q ss_pred EEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEEEEec-CCCEEEEEecCCe
Q 010754 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKT 338 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~ 338 (502)
....+|...|++++|+|++++|++|+.||.|++||++. .....+.+|...|.+++|+| ++..|++|+.|++
T Consensus 91 ------~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 91 ------VDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp ------EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred ------EEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 12235678899999999999999999999999999864 45567889999999999999 6789999999999
Q ss_pred EEEEEcCCCceEEEEe-eccCCeEEEEecC---CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEE
Q 010754 339 AIVWDVKTEEWKQQFE-FHSGPTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 414 (502)
Q Consensus 339 i~~wd~~~~~~~~~~~-~~~~~v~~v~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 414 (502)
|++||++++.....+. .+...+..+.|.+ +..+++++.|+.|++||+++++++.++.+|...|++++|+|++.+|+
T Consensus 165 v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred EEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 9999998887666554 4557788888864 35799999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 415 SCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+|+.||+|+|||+.+++++..+..|...+++++|+|+|. ..++.++.+....+|.
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~asg~~~g~~~~~ 299 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR------KNYIASGFDNGFTVLS 299 (304)
T ss_dssp EEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCG------GGCEEEEETTEEEEEE
T ss_pred EEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCC------ceEEEEecCCceEEEE
Confidence 999999999999999999999999999999999999986 1234455555566664
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=289.60 Aligned_cols=261 Identities=20% Similarity=0.339 Sum_probs=226.3
Q ss_pred ccccCCCCceeeeCC---------CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeE
Q 010754 191 DIATTSASESFEIPN---------SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL 261 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~---------~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~ 261 (502)
.+++.+.+..+.++. ..+..+.+|...|.+++|+|++++|++|+.|++|++||+.+++..
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~----------- 100 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY----------- 100 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----------
T ss_pred EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCee-----------
Confidence 345555555555432 246788999999999999999999999999999999999886521
Q ss_pred EEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecC------CCEEEEEec
Q 010754 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK------GDYLLTGSC 335 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~------~~~l~s~~~ 335 (502)
....+|...|.+++|+|++.+|++|+.||.|++||+++.....+.+|...|.+++|+|. +..|++++.
T Consensus 101 ------~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~ 174 (319)
T 3frx_A 101 ------QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN 174 (319)
T ss_dssp ------EEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEET
T ss_pred ------EEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeC
Confidence 12245678899999999999999999999999999999999999999999999999985 448999999
Q ss_pred CCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEE
Q 010754 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 414 (502)
Q Consensus 336 d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 414 (502)
|+.|++||+++++....+.+|...|.+++|+|++ .|++++.|+.|++||+.+++.+..+..+ ..|.+++|+|++.+|+
T Consensus 175 d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la 253 (319)
T 3frx_A 175 DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLA 253 (319)
T ss_dssp TSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEE
T ss_pred CCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEE
Confidence 9999999999999999999999999999998865 5889999999999999999999988854 6899999999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEec--------cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 415 SCSDDVTAKIWNMKQDKYVHDLR--------EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~--------~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+++.++ +++|++..+..+..+. .|...+.+++|+|+|. .|++++.|+.+++|...
T Consensus 254 ~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-------~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 254 AATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-------TLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS-------EEEEEETTSCEEEEEEE
T ss_pred EEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC-------EEEEeecCceEEEEEEe
Confidence 988665 9999999888777664 3456799999999998 88888899999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=290.77 Aligned_cols=248 Identities=23% Similarity=0.410 Sum_probs=206.7
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+..|.+|.+.|++++|+|+ +||+|+.|++|++|++..+... ....+ ....|...|++++|+|++
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~-----------~~~~~--~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFT-----------LIDVL--DETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCE-----------EEEEE--CTTCCCSCEEEEEECTTS
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeE-----------EEEEE--ecCCccCCEEEEEECCCC
Confidence 46789999999999999987 9999999999999999764210 11111 112377889999999999
Q ss_pred CEEEEEECCCeEEEEECC--------CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC----CceEEEEe
Q 010754 287 TLLATGSYDGQARIWSTN--------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT----EEWKQQFE 354 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~--------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~----~~~~~~~~ 354 (502)
++|++|+.|+.|+||+.. ......+.+|...|.+++|+|++++|++|+.|++|++||++. .+++..+.
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~ 150 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec
Confidence 999999999999999974 235667889999999999999999999999999999999943 24677788
Q ss_pred eccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCC--cceEEEecCCCcEEEEEEcCC--CCEEEEEeCCCcEEEEECCC
Q 010754 355 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPT--GSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 355 ~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~--~~~~~~~~h~~~i~~l~~sp~--g~~las~s~dg~i~iwd~~~ 429 (502)
.|...|.++.|+|+ ..|++++.|+.|++||...+ .++..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+
T Consensus 151 ~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 151 EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 89999999999875 46899999999999999876 678899999999999999998 77999999999999999876
Q ss_pred C--------eeEEEecc-CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 430 D--------KYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 430 ~--------~~~~~~~~-h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+ .+...+.. |..+|++++|+|++ .+++++.|+.+++|...
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~--------~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG--------LIASVGADGVLAVYEEV 279 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECTTS--------CEEEEETTSCEEEEEEE
T ss_pred CCccccceeEEeeecccccccceEEEEEcCCC--------EEEEEeCCCEEEEEEcC
Confidence 4 45556654 89999999999765 47888999999999853
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=299.06 Aligned_cols=247 Identities=19% Similarity=0.257 Sum_probs=206.6
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
....+|...|++++|+|++. +++++.||+|+|||+.+++.... ......+|...|++++|+|+|++
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~-------------~~~~~~~h~~~V~~v~~spdg~~ 153 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLV-------------NKFAKYEHDDIVKTLSVFSDGTQ 153 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CC-------------CCEEECCCSSCEEEEEECSSSSE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEE-------------EeeccCCCCCCEEEEEECCCCCE
Confidence 34567999999999999986 55678899999999987653211 11122356788999999999999
Q ss_pred EEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCCCceEEEEe--eccCCeEEEE
Q 010754 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFE--FHSGPTLDVD 364 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~v~ 364 (502)
|++|+.||.|++||++ +.....+..|...|.+++|+|++. ++++++.|++|++||+++++....+. .+...+.+++
T Consensus 154 l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~ 233 (357)
T 4g56_B 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT 233 (357)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchh
Confidence 9999999999999987 566778899999999999999874 78999999999999999988766554 3566799999
Q ss_pred ecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 365 WRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 365 ~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g-~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
|+|+ ..|++++.|+.|++||+++++++.++.+|...|++++|+|++ ++||+|+.||+|+|||+++++++..+ +|..
T Consensus 234 ~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~ 312 (357)
T 4g56_B 234 WHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD 312 (357)
T ss_dssp ECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS
T ss_pred hhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC
Confidence 9874 468899999999999999999999999999999999999987 68999999999999999999988665 7999
Q ss_pred cEEEEEEcc-CCCCCCCCCccEEEEeecCceEEEEee
Q 010754 442 EIYTIRWSP-TGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 442 ~i~~v~~sp-~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.|++|+|+| ++. .|++++.|+.+++|...
T Consensus 313 ~V~~vafsP~d~~-------~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 313 FVTGVAWSPLDHS-------KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CEEEEEECSSSTT-------EEEEEETTSCEEEEECC
T ss_pred CEEEEEEeCCCCC-------EEEEEcCCCeEEEEECC
Confidence 999999999 666 67788889999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=291.41 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=208.1
Q ss_pred CceEEeccCCCceEEEEE-----cC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEE
Q 010754 206 SDVTILEGHTSEVCACAW-----SP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 279 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~-----~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (502)
.....|+||.+.|++++| ++ ++++|++|+.|++|++|++.+...... . ........+|...|++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~------~----~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY------F----GIPHKALTGHNHFVSD 81 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB------S----EEEEEEECCCSSCEEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc------c----ccccchhccCCCceEE
Confidence 456789999999999999 77 899999999999999999976532110 0 0111233467889999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe---e
Q 010754 280 LDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---F 355 (502)
Q Consensus 280 l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~ 355 (502)
++|+|++.++++|+.|+.|++||+. +.....+.+|...|.+++|+|++++|++++.|++|++||+... ...... .
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~ 160 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKEN 160 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTS
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccC
Confidence 9999999999999999999999986 5667788899999999999999999999999999999999743 333333 5
Q ss_pred ccCCeEEEEecCC-----------CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 010754 356 HSGPTLDVDWRNN-----------VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (502)
Q Consensus 356 ~~~~v~~v~~~~~-----------~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~i 424 (502)
|...+.++.|++. ..|++++.|+.|++|| ........+.+|...|++++|+|+|++|++|+.||.|+|
T Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~i 239 (343)
T 2xzm_R 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239 (343)
T ss_dssp CSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEE
Confidence 7788999999876 4699999999999999 456677889999999999999999999999999999999
Q ss_pred EECCC-CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 425 WNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 425 wd~~~-~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
||+.+ ......+ .+...|.+++|+|++. +++++.++.+++|..
T Consensus 240 wd~~~~~~~~~~~-~~~~~v~~v~~sp~~~--------~la~~~d~~v~iw~~ 283 (343)
T 2xzm_R 240 WDILNLTYPQREF-DAGSTINQIAFNPKLQ--------WVAVGTDQGVKIFNL 283 (343)
T ss_dssp EESSCCSSCSEEE-ECSSCEEEEEECSSSC--------EEEEEESSCEEEEES
T ss_pred EECCCCcccceee-cCCCcEEEEEECCCCC--------EEEEECCCCEEEEEe
Confidence 99954 4344444 3556799999999986 566777889999975
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=304.20 Aligned_cols=264 Identities=21% Similarity=0.356 Sum_probs=219.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCC-----------------------ceeEEE
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP-----------------------LNVLVL 263 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~-----------------------~~~~~~ 263 (502)
..++|.||.+.|++++|+|++++|++|+.|++|+|||+.++.....+..+. +.+..+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 467899999999999999999999999999999999998765432211110 000000
Q ss_pred ee---------ecCccccCCCCeEEEEECCC-CCEEEEEECCCeEEEEECCC-ceEEEe-----cCccCCeEEEEEec-C
Q 010754 264 KH---------VKGRTNEKSKDVTTLDWNGE-GTLLATGSYDGQARIWSTNG-DLKCTL-----SKHKGPIFSLKWNK-K 326 (502)
Q Consensus 264 ~~---------~~~~~~~~~~~v~~l~~s~~-g~~l~s~~~dg~i~iwd~~~-~~~~~~-----~~~~~~v~~l~~~~-~ 326 (502)
.. ......+|...|.++.|+|+ +..|++|+.|+.|++||+.. .....+ .+|...|.+++|++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 00 11234567888999999996 45799999999999999874 444444 57899999999987 7
Q ss_pred CCEEEEEecCCeEEEEEcC-CCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCC-----
Q 010754 327 GDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQG----- 399 (502)
Q Consensus 327 ~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~----- 399 (502)
+++|++|+.|++|++||++ .+..+..+.+|...|.+++|+|+ ..|++++.|++|++||++++..+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 8999999999999999998 55788889999999999999876 4689999999999999999999888865532
Q ss_pred --cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe----ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEE
Q 010754 400 --EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL----REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLY 473 (502)
Q Consensus 400 --~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~----~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~i 473 (502)
.|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|. .|++++.|+.+++
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-------~l~sgs~D~~i~i 370 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS-------ALCTGSWDKNLKI 370 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS-------EEEEECTTSCEEE
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC-------EEEEeeCCCCEEE
Confidence 4899999999999999999999999999999988777 58999999999999998 7888888999999
Q ss_pred EEee
Q 010754 474 WICS 477 (502)
Q Consensus 474 w~~~ 477 (502)
|...
T Consensus 371 W~~~ 374 (380)
T 3iz6_a 371 WAFS 374 (380)
T ss_dssp EECC
T ss_pred EecC
Confidence 9753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=298.61 Aligned_cols=247 Identities=24% Similarity=0.365 Sum_probs=202.9
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CC
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EG 286 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g 286 (502)
.++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. . ......+|...|++++|++ ++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-----------~----~~~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-----------I----LIADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-----------E----EEEEEECCSSCEEEEEECCGGGS
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-----------E----EEEEEcCCCccEEEEEeCCCCCC
Confidence 35679999999999999999999999999999999876531 0 1122346788999999986 48
Q ss_pred CEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCCce---EEEEeeccC
Q 010754 287 TLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEW---KQQFEFHSG 358 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~ 358 (502)
++|++|+.|+.|++||++.. ....+.+|...|.+++|+|+ +.+|++|+.|++|++||++.+.. ...+..|..
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence 99999999999999998753 45677889999999999997 78999999999999999987632 234456888
Q ss_pred CeEEEEecCC------------------CEEEEEeCCCeEEEEEcCCC---cceEEEecCCCcEEEEEEcCCC----CEE
Q 010754 359 PTLDVDWRNN------------------VSFATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTG----SLL 413 (502)
Q Consensus 359 ~v~~v~~~~~------------------~~~~~~~~d~~i~i~d~~~~---~~~~~~~~h~~~i~~l~~sp~g----~~l 413 (502)
.+.++.|+++ ..|++++.|+.|++||+... .++..+.+|...|.+++|+|++ .+|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 8999999875 47999999999999999765 4677788999999999999987 899
Q ss_pred EEEeCCCcEEEEECCCC---e-eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 414 ASCSDDVTAKIWNMKQD---K-YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 414 as~s~dg~i~iwd~~~~---~-~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|+|+.||+|+||++.+. . ....+..|...|++++|+|+|. .|++++.|+.+++|...
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~-------~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN-------ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC-------CEEEEESSSCEEEEEEC
T ss_pred EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC-------EEEEEcCCCeEEEEEEC
Confidence 99999999999998762 1 2234557889999999999998 78888999999999864
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=288.56 Aligned_cols=272 Identities=21% Similarity=0.359 Sum_probs=218.1
Q ss_pred CCCCcccccCCCCceeeeC---CCc----eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCc
Q 010754 186 GPEPMDIATTSASESFEIP---NSD----VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPL 258 (502)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~---~~~----~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~ 258 (502)
.|....+++.+.+..+.++ ... .....+|.+.|.+++|+|++++|++|+.|++++||++..+..
T Consensus 25 sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~--------- 95 (345)
T 3fm0_A 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF--------- 95 (345)
T ss_dssp CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E---------
T ss_pred CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe---------
Confidence 3444455565555555543 221 223478999999999999999999999999999999876531
Q ss_pred eeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC----ceEEEecCccCCeEEEEEecCCCEEEEEe
Q 010754 259 NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334 (502)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~ 334 (502)
. ......+|...|++++|+|++++|++|+.|+.|++||+.. .....+..|...|.+++|+|++++|++++
T Consensus 96 --~----~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s 169 (345)
T 3fm0_A 96 --E----CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169 (345)
T ss_dssp --E----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE
T ss_pred --E----EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe
Confidence 0 1122345778999999999999999999999999999864 23567789999999999999999999999
Q ss_pred cCCeEEEEEcCCCc--eEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCC---------------cceEEEec
Q 010754 335 CDKTAIVWDVKTEE--WKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGEN---------------RPIKTFAG 396 (502)
Q Consensus 335 ~d~~i~~wd~~~~~--~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~---------------~~~~~~~~ 396 (502)
.|++|++||++++. +...+.+|...|.+++|+|++ .|++++.|++|++|+.... .++.++.+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECS
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecC
Confidence 99999999998875 446788899999999998764 6899999999999997432 22345555
Q ss_pred -CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe
Q 010754 397 -HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK---------YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR 466 (502)
Q Consensus 397 -h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~---------~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las 466 (502)
|...|.+++|+|++.+|++++.|+.|++|+..... ..+...+|...|++|+|+|++. ..+++++
T Consensus 250 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------~~laS~s 323 (345)
T 3fm0_A 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEP------GLLASCS 323 (345)
T ss_dssp SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSST------TEEEEEE
T ss_pred CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCc------eEEEEcC
Confidence 88899999999999999999999999999986542 1233458999999999999974 2567788
Q ss_pred ecCceEEEEeee
Q 010754 467 LIPYFLYWICSI 478 (502)
Q Consensus 467 ~~~~~~iw~~~~ 478 (502)
.|+.+++|...-
T Consensus 324 ~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 324 DDGEVAFWKYQR 335 (345)
T ss_dssp TTSCEEEEEECC
T ss_pred CCCcEEEEEecC
Confidence 899999998643
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=313.89 Aligned_cols=249 Identities=24% Similarity=0.355 Sum_probs=217.6
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
......+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... .......|...|.+++|+|
T Consensus 49 ~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~---------------~~~~~~~~~~~v~~v~fs~ 113 (611)
T 1nr0_A 49 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------LKTTIPVFSGPVKDISWDS 113 (611)
T ss_dssp SSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------EEEEEECSSSCEEEEEECT
T ss_pred cccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce---------------eeEeecccCCceEEEEECC
Confidence 3457889999999999999999999999999999999998754321 0112234677899999999
Q ss_pred CCCEEEEEECC----CeEEEEECCCceEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCCCceEEEEeeccCC
Q 010754 285 EGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (502)
Q Consensus 285 ~g~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 359 (502)
+|++|++++.+ +.|++||. +.....+.+|...|.+++|+|++. .|++|+.|++|++||..++++...+.+|...
T Consensus 114 dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~ 192 (611)
T 1nr0_A 114 ESKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 192 (611)
T ss_dssp TSCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC
T ss_pred CCCEEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCc
Confidence 99999999875 47899984 445567889999999999999986 6999999999999999999999999999999
Q ss_pred eEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEe-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 010754 360 TLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 360 v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~-------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~ 431 (502)
|.+++|+|++ .+++++.|+.|++||+.+++.+..+. +|.+.|.+++|+|+|++|++|+.|++|+|||+.+++
T Consensus 193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 9999998865 58899999999999999999888884 799999999999999999999999999999999877
Q ss_pred eEEE-------------------------------------------eccCCCcEEEEEEccCCCCCCCCCccEEEEeec
Q 010754 432 YVHD-------------------------------------------LREHSKEIYTIRWSPTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 432 ~~~~-------------------------------------------~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~ 468 (502)
++.. +.+|...|++++|+|+|. .+++++.|
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-------~l~s~s~D 345 (611)
T 1nr0_A 273 VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-------TLFSADAE 345 (611)
T ss_dssp EEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-------EEEEEETT
T ss_pred eeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-------EEEEEeCC
Confidence 6543 347889999999999998 88889999
Q ss_pred CceEEEEe
Q 010754 469 PYFLYWIC 476 (502)
Q Consensus 469 ~~~~iw~~ 476 (502)
+.+++|+.
T Consensus 346 ~~v~~Wd~ 353 (611)
T 1nr0_A 346 GHINSWDI 353 (611)
T ss_dssp SCEEEEET
T ss_pred CcEEEEEC
Confidence 99999974
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=233.88 Aligned_cols=84 Identities=51% Similarity=0.858 Sum_probs=70.5
Q ss_pred CCCcchhhHHHHHHHHhcCCcchhhcccccccCccCCCCCCCCCchhHHHHHHhhhhhhhhhhccCCCCcccCccccccc
Q 010754 3 SITSEELNYLVFRYLQESGLLHSAFVLGYEAGINKCNIDGNLVPPRALITFVQKGLQYLEMEANLSNSDVDMDEDFSFLQ 82 (502)
Q Consensus 3 ~lts~evn~li~rYlqE~g~~~sA~~~~~e~~~~~~~~~~~~ip~~aLv~l~qkgl~y~~~e~~~~~~~~~~~~~~~~~~ 82 (502)
|||||||||||||||||+||.||||+|++||+|.++++++.+|||||||+||||||||+++|.++++++..++.. ++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~~~~~~VppgaLVsllQKGL~Y~~~E~~~~~~g~~~~~~--~~~ 79 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQSNINGTLVPPAALISILQKGLQYVEAEISINEDGTVFDGR--PIE 79 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSCCCGGGSCTTHHHHHHHHHHHHHHHHHHTTSSCCTTCC------
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccccccccCCcchHHHHHHHHHHHHHHHHHhcCCCCccCCC--CCC
Confidence 799999999999999999999999999999999999998899999999999999999999999999988765533 334
Q ss_pred cCcccc
Q 010754 83 PMDLIT 88 (502)
Q Consensus 83 ~~~~~~ 88 (502)
|+++..
T Consensus 80 ~~~ll~ 85 (90)
T 2xtc_A 80 SLSLID 85 (90)
T ss_dssp ------
T ss_pred chhhhh
Confidence 444443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=291.76 Aligned_cols=244 Identities=20% Similarity=0.282 Sum_probs=208.0
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|.+++|+|++++|++|+.|++|+|||+.+++.. ....+|...|++++|+|++++|++|+.|
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~-----------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d 186 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-----------------MILQGHEQDIYSLDYFPSGDKLVSGSGD 186 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-----------------EEEccCCCCEEEEEEcCCCCEEEEecCC
Confidence 35999999999999999999999999999876421 1234567889999999999999999999
Q ss_pred CeEEEEECCCceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEE-------eeccCCeEEEEecC
Q 010754 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQF-------EFHSGPTLDVDWRN 367 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~v~~~~ 367 (502)
+.|++||+..........+...+.+++|+| ++++|++|+.|+.|++||++++..+..+ .+|...|.+++|++
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~ 266 (393)
T 1erj_A 187 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266 (393)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT
T ss_pred CcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC
Confidence 999999987655444445677899999999 8999999999999999999999888776 46888999999987
Q ss_pred CC-EEEEEeCCCeEEEEEcCCC------------cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 368 NV-SFATSSTDNMIYVCKIGEN------------RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 368 ~~-~~~~~~~d~~i~i~d~~~~------------~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
++ .+++++.|+.|++||+++. .+...+.+|...|.+++|+|++.+|++|+.||.|++||+.+++++.
T Consensus 267 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~ 346 (393)
T 1erj_A 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346 (393)
T ss_dssp TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 65 6899999999999999753 3456788999999999999999999999999999999999999999
Q ss_pred EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 435 ~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.+.+|...|.+++|+|.... ......+++++.|+.+++|...
T Consensus 347 ~l~~h~~~v~~v~~~~~~~~-~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 347 MLQGHRNSVISVAVANGSSL-GPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEECCSSCEEEEEECSSCTT-CTTCEEEEEEETTSEEEEEEEE
T ss_pred EECCCCCCEEEEEecCCcCc-CCCCCEEEEECCCCcEEECccc
Confidence 99999999999999985431 1122367888889999999864
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=285.69 Aligned_cols=244 Identities=18% Similarity=0.296 Sum_probs=206.7
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.. ....+|...|++++|+|++
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~-----------------~~~~~h~~~v~~v~~sp~~ 130 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTY-----------------KRFVGHQSEVYSVAFSPDN 130 (343)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEE-----------------EEEECCCSCEEEEEECSST
T ss_pred ccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEE-----------------EEEcCCCCcEEEEEECCCC
Confidence 35678999999999999999999999999999999999876521 1223567889999999999
Q ss_pred CEEEEEECCCeEEEEECCCceEEEec---CccCCeEEEEEecCC----------CEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 287 TLLATGSYDGQARIWSTNGDLKCTLS---KHKGPIFSLKWNKKG----------DYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~v~~l~~~~~~----------~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
++|++|+.|+.|++||+.+....... .|...|.+++|+|++ .+|++++.|++|++|| ........+
T Consensus 131 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~ 209 (343)
T 2xzm_R 131 RQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTF 209 (343)
T ss_dssp TEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEE
T ss_pred CEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEE
Confidence 99999999999999999876555544 788999999999987 7999999999999999 456777788
Q ss_pred eeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCC-CcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 010754 354 EFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 354 ~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~ 431 (502)
..|...|.+++|++++ .|++++.|+.|++||+.. ..+...+. +...|.+++|+|++.+|+++ .|+.|++||+.+++
T Consensus 210 ~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 210 KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQS 287 (343)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCC
T ss_pred cCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCC
Confidence 8999999999998765 688999999999999954 44555553 56679999999999988765 47789999998776
Q ss_pred eEE--Eec-----------cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 432 YVH--DLR-----------EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 432 ~~~--~~~-----------~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
... .+. +|...|++++|+|+|. .|++|+.|+.+++|...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-------~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-------KLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-------CEEEEETTSEEEEEEEE
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCC-------eEEEecCCceEEEEEEE
Confidence 543 443 6888899999999998 78889999999999864
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=291.54 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=201.1
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT 291 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s 291 (502)
..|...|.+++|+|||++|++++ |+++++||.............. .........+...|++++|+|++ .|++
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~s~d~-~l~~ 98 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPN------EGFCSAGVQTEAGVADLTWVGER-GILV 98 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTC------GGGCSEEEEESSCEEEEEEETTT-EEEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCC------cceeeeeeccCCCEEEEEEeCCC-eEEE
Confidence 35677899999999999999888 7788998743210000000000 00001111234679999999985 6889
Q ss_pred EECCCeEEEEECCCc-e----EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 292 GSYDGQARIWSTNGD-L----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 292 ~~~dg~i~iwd~~~~-~----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
|+.||.|+|||++.. . .....+|...|++++|+|++++|++|+.|++|++||+.+++++..+.+|...|.++.|+
T Consensus 99 ~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~ 178 (344)
T 4gqb_B 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178 (344)
T ss_dssp EETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence 999999999997642 2 23455899999999999999999999999999999999999999999999999999998
Q ss_pred CCC--EEEEEeCCCeEEEEEcCCCcceEEEe--cCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 367 NNV--SFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 367 ~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
+++ .|++++.|+.|++||+++++++..+. .|...+++++|+|+ +++|++|+.||+|+|||+++++++..+.+|..
T Consensus 179 ~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~ 258 (344)
T 4gqb_B 179 PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQ 258 (344)
T ss_dssp SSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSS
T ss_pred CCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCC
Confidence 754 68999999999999999999888774 45567999999995 67899999999999999999999999999999
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.|++++|+|+|. ..|++++.|+.+++|+.
T Consensus 259 ~v~~v~fsp~g~------~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 259 CVTGLVFSPHSV------PFLASLSEDCSLAVLDS 287 (344)
T ss_dssp CEEEEEECSSSS------CCEEEEETTSCEEEECT
T ss_pred CEEEEEEccCCC------eEEEEEeCCCeEEEEEC
Confidence 999999999985 24677888999999963
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-36 Score=286.46 Aligned_cols=252 Identities=23% Similarity=0.395 Sum_probs=200.1
Q ss_pred eEEe-cc-CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 208 VTIL-EG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 208 ~~~l-~~-H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+..+ .+ |.+.|.+++|+|++++|++|+.|++|+||++....... .... ......+|...|++++|+|+
T Consensus 49 ~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~------~~~~----~~~~~~~h~~~V~~v~~sp~ 118 (330)
T 2hes_X 49 IDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT------FEMD----LLAIIEGHENEVKGVAWSND 118 (330)
T ss_dssp EEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------------CCCE----EEEEEC----CEEEEEECTT
T ss_pred EEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCcc------ccce----eEEEEcCCCCcEEEEEECCC
Confidence 3445 44 99999999999999999999999999999986432100 0000 11223457789999999999
Q ss_pred CCEEEEEECCCeEEEEECC-C----ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC--ceEEEEeeccC
Q 010754 286 GTLLATGSYDGQARIWSTN-G----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE--EWKQQFEFHSG 358 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~ 358 (502)
|++|++|+.|+.|++||+. . .....+.+|...|.+++|+|++.+|++++.|++|++||+.++ +++..+.+|..
T Consensus 119 g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~ 198 (330)
T 2hes_X 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198 (330)
T ss_dssp SCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred CCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC
Confidence 9999999999999999984 2 345678899999999999999999999999999999999876 57788899999
Q ss_pred CeEEEEecCC---CEEEEEeCCCeEEEEEcCCC--------cceEEEec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 359 PTLDVDWRNN---VSFATSSTDNMIYVCKIGEN--------RPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 359 ~v~~v~~~~~---~~~~~~~~d~~i~i~d~~~~--------~~~~~~~~-h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
.|.++.|+++ ..+++++.|++|++||+..+ .....+.+ |...|.+++|++++ +|++++.||.|+|||
T Consensus 199 ~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~ 277 (330)
T 2hes_X 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYE 277 (330)
T ss_dssp CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEE
T ss_pred cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEE
Confidence 9999999886 36899999999999999764 33445555 89999999999765 899999999999999
Q ss_pred CCCCe--eEEE-eccCCC-cEEEEEEcc--CCCCCCCCCccEEEEeecCceEEEEee
Q 010754 427 MKQDK--YVHD-LREHSK-EIYTIRWSP--TGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 427 ~~~~~--~~~~-~~~h~~-~i~~v~~sp--~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
..+++ .+.. +.+|.. .|.+++|+| ++. .|++++.|+.+++|...
T Consensus 278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~-------~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKT-------ILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EETTEEEEEEEESCTTTTSCEEEEEEC-----C-------CEEEEETTSEEEEEEC-
T ss_pred cCCCceEEEeccccccccceEEEEEEecCCCce-------EEEEecCCCcEEEEEec
Confidence 98874 3333 357887 899999999 565 67888899999999753
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=279.87 Aligned_cols=246 Identities=26% Similarity=0.462 Sum_probs=215.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|.+.|++++|+|++++|++|+.||.|++|++.+++.. .....|...|.+++|+|++
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-----------------KTISGHKLGISDVAWSSDS 77 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECTTS
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc-----------------hhhccCCCceEEEEEcCCC
Confidence 45678999999999999999999999999999999998876521 1223567789999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
++|++|+.||.|++||+. +.....+..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..++.++.|
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 157 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence 999999999999999986 4667788899999999999999999999999999999999999999999999999999999
Q ss_pred cCC-CEEEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcE
Q 010754 366 RNN-VSFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443 (502)
Q Consensus 366 ~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i 443 (502)
+++ ..+++++.|+.|++||+++++.+..+. .+...+..++|+|++++|++++.||.|++||+++++++..+.+|...+
T Consensus 158 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (312)
T 4ery_A 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 237 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce
Confidence 875 468899999999999999998887764 456789999999999999999999999999999999999998887653
Q ss_pred E--EEEEc-cCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 444 Y--TIRWS-PTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 444 ~--~v~~s-p~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
. ...|+ +++. .+++++.|+.+++|+.
T Consensus 238 ~~~~~~~~~~~~~-------~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 238 YCIFANFSVTGGK-------WIVSGSEDNLVYIWNL 266 (312)
T ss_dssp SCCCEEEECSSSC-------EEEECCTTSCEEEEET
T ss_pred EEEEEEEEeCCCc-------EEEEECCCCEEEEEEC
Confidence 3 23444 4444 6778888899999974
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=286.89 Aligned_cols=250 Identities=20% Similarity=0.394 Sum_probs=215.3
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--C
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--E 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~ 285 (502)
...+.+|.+.|++++|+|++++|++|+.||+|++|++.++... . ........|...|++++|+| +
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---------~----~~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN---------W----ELSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC---------E----EEEEEEECCSSCEEEEEECCGGG
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc---------c----eecceeccCCCcEEEEEEcCCCC
Confidence 3567899999999999999999999999999999999865321 0 11122335678899999999 6
Q ss_pred CCEEEEEECCCeEEEEECCC----------ceEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 286 GTLLATGSYDGQARIWSTNG----------DLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
+++|++|+.||.|++||++. .....+..|...|.+++|+|+ +++|++++.||.|++||+++++.+..+
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 99999999999999999875 457788899999999999999 999999999999999999887754433
Q ss_pred e-------------eccCCeEEEEecC----CCEEEEEeCCCeEEEEEcCCCcc--eEEEecCCCcEEEEEEcCCC----
Q 010754 354 E-------------FHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTG---- 410 (502)
Q Consensus 354 ~-------------~~~~~v~~v~~~~----~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~~~i~~l~~sp~g---- 410 (502)
. .+...+.++.|++ ...+++++.++.+.+|+...+.. +..+.+|...|++++|+|++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~ 230 (351)
T 3f3f_A 151 TLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWY 230 (351)
T ss_dssp EEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSS
T ss_pred cccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcc
Confidence 2 4667899999987 56799999999998888877764 77788999999999999998
Q ss_pred CEEEEEeCCCcEEEEECCCC----------------------------------------------eeEEEeccCCCcEE
Q 010754 411 SLLASCSDDVTAKIWNMKQD----------------------------------------------KYVHDLREHSKEIY 444 (502)
Q Consensus 411 ~~las~s~dg~i~iwd~~~~----------------------------------------------~~~~~~~~h~~~i~ 444 (502)
++|++|+.||.|++||++++ +++..+.+|...|+
T Consensus 231 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (351)
T 3f3f_A 231 QLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVW 310 (351)
T ss_dssp EEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEE
T ss_pred eEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEE
Confidence 89999999999999999865 67778889999999
Q ss_pred EEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+++|+|+|. .+++++.|+.+++|...
T Consensus 311 ~~~~s~~~~-------~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 311 SVSWNLTGT-------ILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEEECSSSC-------CEEEEETTSCEEEEEEC
T ss_pred EEEEcCCCC-------EEEEecCCCcEEEEecC
Confidence 999999998 78889999999999865
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=305.44 Aligned_cols=246 Identities=26% Similarity=0.481 Sum_probs=221.9
Q ss_pred eeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE
Q 010754 202 EIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (502)
Q Consensus 202 ~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 281 (502)
.+....+..+.+|...|.+++|+|++++|++|+.|+.|++|+... +. +. ....|...|++++
T Consensus 331 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~-------------~~----~~~~~~~~v~~~~ 392 (577)
T 2ymu_A 331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QL-------------LQ----TLTGHSSSVRGVA 392 (577)
T ss_dssp ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CE-------------EE----EEECCSSCEEEEE
T ss_pred eCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CE-------------EE----EecCCCCCeEEEE
Confidence 344566788899999999999999999999999999999999543 21 11 1234677899999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 282 WNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 282 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
|+|+|++|++++.|+.|++||..+.....+..|...|++++|+|++++|++++.|++|++||. +++.+..+..|...+.
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~ 471 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVR 471 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEE
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEE
Confidence 999999999999999999999999999999999999999999999999999999999999996 5778888999999999
Q ss_pred EEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC
Q 010754 362 DVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 362 ~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~ 440 (502)
+++|+|++ .+++++.|+.|++||. +++.+..+.+|...|++++|+|+|++||+++.||.|+|||. +++++..+.+|.
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~ 549 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 549 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCS
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCC
Confidence 99998765 5888999999999995 67888999999999999999999999999999999999995 688999999999
Q ss_pred CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 441 KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 441 ~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.+|++++|+|||. .|++++.|+.+++|+
T Consensus 550 ~~v~~~~fs~dg~-------~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 550 SSVWGVAFSPDGQ-------TIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECTTSS-------CEEEEETTSCEEEEC
T ss_pred CCEEEEEEcCCCC-------EEEEEeCCCEEEEeC
Confidence 9999999999998 888999999999995
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=290.00 Aligned_cols=247 Identities=17% Similarity=0.223 Sum_probs=203.4
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeC------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSG------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
...+|...|.+++|+|||++||+|+. |++|++|+..++..... .......|...|++++|+
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~-------------~~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES-------------LCTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG-------------GCSEEEECSSCEEEEEEE
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee-------------EecccCCCCCCEEEEEEc
Confidence 34579999999999999999999997 67899999877643211 112223456789999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCce-----EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC
Q 010754 284 GEGTLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 358 (502)
|++. +++++.||.|+|||+.... .....+|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|..
T Consensus 104 ~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~ 182 (357)
T 4g56_B 104 SEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS 182 (357)
T ss_dssp TTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC
Confidence 9986 5567889999999976432 234557999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEe--cCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeE
Q 010754 359 PTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 359 ~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~~~~ 433 (502)
.|.+++|+++ ..+++++.|+.|++||+++++++..+. .|...+++++|+|+ +.+|++|+.|+.|++||+++++++
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~ 262 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA 262 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe
Confidence 9999999765 368999999999999999988766554 46678999999997 568999999999999999999999
Q ss_pred EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 434 ~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..+.+|..+|++++|+|+|. ..|++++.|+.+++|+.
T Consensus 263 ~~~~~~~~~v~~l~~sp~~~------~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 263 QTSAVHSQNITGLAYSYHSS------PFLASISEDCTVAVLDA 299 (357)
T ss_dssp EEECCCSSCEEEEEECSSSS------CCEEEEETTSCEEEECT
T ss_pred EEEeccceeEEEEEEcCCCC------CEEEEEeCCCEEEEEEC
Confidence 99999999999999999985 24667888899999964
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=275.73 Aligned_cols=266 Identities=24% Similarity=0.412 Sum_probs=222.3
Q ss_pred CCCcccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 187 PEPMDIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
|....+++.+.+..+.+. ......+.+|...|.+++|+|++++|++|+.|+.|++||+.+++..
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~------------ 100 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL------------ 100 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE------------
T ss_pred CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE------------
Confidence 333344555555444442 3456788999999999999999999999999999999999876531
Q ss_pred EeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEE
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~ 341 (502)
. ....|...|.+++|+|++++|++|+.||.|++||+. +.....+..|..+|.+++|+|++++|++++.||.|++
T Consensus 101 -~----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 175 (312)
T 4ery_A 101 -K----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175 (312)
T ss_dssp -E----EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -E----EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 1 123467789999999999999999999999999987 4667788899999999999999999999999999999
Q ss_pred EEcCCCceEEEEee-ccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEE---EEEEcCCCCEEEEE
Q 010754 342 WDVKTEEWKQQFEF-HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN---CVKWDPTGSLLASC 416 (502)
Q Consensus 342 wd~~~~~~~~~~~~-~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~---~l~~sp~g~~las~ 416 (502)
||+++++.+..+.. +..++..++|++++ .+++++.|+.|++||+.+++.+..+.+|...+. .....+++.+|++|
T Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp EETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred EECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 99999988877643 55678999998764 588999999999999999999999998876533 23334678999999
Q ss_pred eCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe--ecCceEEEEe
Q 010754 417 SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR--LIPYFLYWIC 476 (502)
Q Consensus 417 s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las--~~~~~~iw~~ 476 (502)
+.||.|++||+.+++++..+.+|...|.+++|+|++. .+++++ .|+.+++|..
T Consensus 256 ~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-------~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 256 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN-------IIASAALENDKTIKLWKS 310 (312)
T ss_dssp CTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSS-------EEEEEECTTTCCEEEEEC
T ss_pred CCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCC-------ceEEEEccCCccEEEecC
Confidence 9999999999999999999999999999999999998 555555 3788999964
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=287.62 Aligned_cols=249 Identities=26% Similarity=0.401 Sum_probs=213.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE- 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~- 285 (502)
.+.++.+|.+.|++++|+|++++||+|+.||.|+||++..... ........|...|++++|+++
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------KLIDTLTGHEGPVWRVDWAHPK 67 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---------------EEEEEECCCSSCEEEEEECCGG
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc---------------eeeeEecCCCCcEEEEEeCCCC
Confidence 3567899999999999999999999999999999999874321 111223456789999999987
Q ss_pred -CCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCCc--eEEEEeecc
Q 010754 286 -GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTEE--WKQQFEFHS 357 (502)
Q Consensus 286 -g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~ 357 (502)
+++|++|+.||.|++||+... ....+..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+..|.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 999999999999999998754 66777889999999999999 9999999999999999998873 445667789
Q ss_pred CCeEEEEecC--------------CCEEEEEeCCCeEEEEEcCCCc----ceEEEecCCCcEEEEEEcCC---CCEEEEE
Q 010754 358 GPTLDVDWRN--------------NVSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPT---GSLLASC 416 (502)
Q Consensus 358 ~~v~~v~~~~--------------~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~i~~l~~sp~---g~~las~ 416 (502)
..+.++.|++ +..+++++.|+.|++||++.+. .+..+.+|...|++++|+|+ +.+|+++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE
Confidence 9999999987 5779999999999999998765 45677889999999999999 8999999
Q ss_pred eCCCcEEEEECCCCe-----eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 417 SDDVTAKIWNMKQDK-----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 417 s~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+.||.|+|||++++. .+.....|...|++++|+|+|. .+++++.++.+++|...
T Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-------~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------VLALSGGDNKVTLWKEN 286 (379)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC-------CEEEEESSSSEEEEEEE
T ss_pred eCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC-------EEEEecCCCcEEEEeCC
Confidence 999999999998863 2223335888999999999998 78888999999999876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=286.73 Aligned_cols=256 Identities=22% Similarity=0.365 Sum_probs=208.5
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeee-cCccccCCCCeEEEEECCCCCEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
.+|.+.|.|++|+|+|++||+|+ |+++++|++.++.....+............. ......+...|++++|+|+|++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 37999999999999999999986 6899999998876533222111000000000 000112233599999999999999
Q ss_pred EEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC--
Q 010754 291 TGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-- 367 (502)
Q Consensus 291 s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-- 367 (502)
+|+.||.|+|||+.. .....+.+|...|.+++|+|++++|++++.|++|++||++++++...+. +...+..++|++
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 999999999999874 5667888999999999999999999999999999999999998887775 556789999976
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEE-------ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------
Q 010754 368 NVSFATSSTDNMIYVCKIGENRPIKTF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----------- 429 (502)
Q Consensus 368 ~~~~~~~~~d~~i~i~d~~~~~~~~~~-------~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~----------- 429 (502)
+..+++++.|+.|++||+.++..+..+ .+|...|++++|+|+|++|++|+.||.|++||+++
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence 457899999999999999999887776 57999999999999999999999999999999975
Q ss_pred -CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 430 -DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 430 -~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.+...+.+|...|.+++|+|++. .+++++.|+.+++|+.
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~-------~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDE-------YILSGSKDRGVLFWDK 339 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGC-------EEEEEETTSEEEEEET
T ss_pred CCcceEEEecccCcEEEEEECCCCC-------EEEEEeCCCeEEEEEC
Confidence 345667789999999999999998 7888889999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=295.52 Aligned_cols=245 Identities=27% Similarity=0.455 Sum_probs=221.3
Q ss_pred eCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 203 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 203 ~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
.....+..+.+|...|.+++|+|++++|++++.|++|++|++..... . ....|...|.+++|
T Consensus 291 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~--------------~----~~~~~~~~v~~~~~ 352 (577)
T 2ymu_A 291 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL--------------Q----TLTGHSSSVWGVAF 352 (577)
T ss_dssp TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE--------------E----EECCCSSCEEEEEE
T ss_pred CCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee--------------E----EEeCCCCCEEEEEE
Confidence 34556788899999999999999999999999999999999765321 1 12345678999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 283 NGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
+|+|++|++|+.||.|++|+..+.....+..|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+
T Consensus 353 s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~ 431 (577)
T 2ymu_A 353 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWG 431 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEE
T ss_pred CCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999995 67788889999999999
Q ss_pred EEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 363 VDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 363 v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
++|+|++ .+++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|+|||. +++++..+.+|..
T Consensus 432 ~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~ 509 (577)
T 2ymu_A 432 VAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 509 (577)
T ss_dssp EEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSS
T ss_pred EEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCC
Confidence 9998754 6889999999999996 56778899999999999999999999999999999999994 6889999999999
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+|++++|+|+|. .|++++.|+.+++|+
T Consensus 510 ~v~~l~~s~dg~-------~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 510 SVRGVAFSPDGQ-------TIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEEECTTSS-------CEEEEETTSEEEEEC
T ss_pred CEEEEEEcCCCC-------EEEEEECcCEEEEEe
Confidence 999999999998 788888899999996
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=304.33 Aligned_cols=248 Identities=23% Similarity=0.324 Sum_probs=213.3
Q ss_pred eEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
...+++|++.|++++|+|+ +++|+||+.|++|++|++.+..... .. ......+|...|++++|+|++
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~--------~~----~~~~~~~h~~~v~~v~~s~~g 442 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY--------GV----AQRRLTGHSHFVEDVVLSSDG 442 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS--------CE----EEEEEECCSSCEEEEEECTTS
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc--------cc----ccceecCCCCcEEEEEECCCC
Confidence 3578999999999999996 5799999999999999997653211 00 112234678899999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE---eeccCCeEE
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF---EFHSGPTLD 362 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~ 362 (502)
++|++|+.||.|+|||+. +.....+.+|...|.+++|+|++++|++|+.|++|++||+......... ..|...|.+
T Consensus 443 ~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 522 (694)
T 3dm0_A 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522 (694)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEE
T ss_pred CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEE
Confidence 999999999999999986 4567788899999999999999999999999999999998655333222 347788999
Q ss_pred EEecCCC---EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC
Q 010754 363 VDWRNNV---SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 363 v~~~~~~---~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h 439 (502)
+.|+++. .+++++.|+.|++||+++++....+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+++++..+..
T Consensus 523 ~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~- 601 (694)
T 3dm0_A 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA- 601 (694)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-
T ss_pred EEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-
Confidence 9998864 699999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
...|.+++|+|++. +++++.++.+++|+.
T Consensus 602 ~~~v~~~~~sp~~~--------~l~~~~~~~i~iwd~ 630 (694)
T 3dm0_A 602 NSVIHALCFSPNRY--------WLCAATEHGIKIWDL 630 (694)
T ss_dssp SSCEEEEEECSSSS--------EEEEEETTEEEEEET
T ss_pred CCcEEEEEEcCCCc--------EEEEEcCCCEEEEEC
Confidence 56799999999986 566777888999974
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=271.58 Aligned_cols=248 Identities=24% Similarity=0.341 Sum_probs=212.8
Q ss_pred eEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..+|+||.+.|++++|+|+ +++|||||.|++|+|||+.+..... ... .....+|...|++++|+|+|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~--------~~~----~~~l~~h~~~V~~~~~s~dg 98 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY--------GIP----QRALRGHSHFVSDVVISSDG 98 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS--------EEE----EEEECCCSSCEEEEEECTTS
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc--------cee----eEEEeCCCCCEEEEEECCCC
Confidence 3579999999999999997 6899999999999999998754321 111 12234577899999999999
Q ss_pred CEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE-EEeeccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~v~ 364 (502)
++|++|+.||.|++|+... ........+...+..+.+++++++|++++.|+.+++||+....... ....|...+..+.
T Consensus 99 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~ 178 (340)
T 4aow_A 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178 (340)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEE
T ss_pred CEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceE
Confidence 9999999999999999774 4555666788889999999999999999999999999987655433 3456788899999
Q ss_pred ecCC---CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 365 WRNN---VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 365 ~~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
|.++ ..+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.||.|++||+++.+++..+..+ .
T Consensus 179 ~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~ 257 (340)
T 4aow_A 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-D 257 (340)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-S
T ss_pred EccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-c
Confidence 8654 45789999999999999999999999999999999999999999999999999999999999999888754 5
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.|.+++|+|++. +++++.++.+++|+.
T Consensus 258 ~v~~~~~~~~~~--------~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 258 IINALCFSPNRY--------WLCAATGPSIKIWDL 284 (340)
T ss_dssp CEEEEEECSSSS--------EEEEEETTEEEEEET
T ss_pred eEEeeecCCCCc--------eeeccCCCEEEEEEC
Confidence 799999999875 788888999999964
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=281.00 Aligned_cols=250 Identities=19% Similarity=0.354 Sum_probs=209.8
Q ss_pred eCCCceEEeccCCCceEEEEEcCC---CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEE
Q 010754 203 IPNSDVTILEGHTSEVCACAWSPA---GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTT 279 (502)
Q Consensus 203 ~~~~~~~~l~~H~~~V~~~~~~p~---~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 279 (502)
.+...+..+.+|.+.|++++|+|+ |++|++|+.||.|++|++.+.... .......|...|++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------------~~~~~~~h~~~v~~ 91 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------------IPKAQQMHTGPVLD 91 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------------EEEEEEECSSCEEE
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------------eEEEeccccCCEEE
Confidence 345567889999999999999998 699999999999999999873210 11122346788999
Q ss_pred EEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEE--ecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc
Q 010754 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW--NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 280 l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
++|+|++++|++|+.||.|++||+.......+..|...|.+++| +|++++|++++.||.|++||+++++.+..+..+.
T Consensus 92 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 171 (368)
T 3mmy_A 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE 171 (368)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS
T ss_pred EEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC
Confidence 99999999999999999999999988777778889999999999 8899999999999999999999988777666443
Q ss_pred C-----------------------------------------CeEEEEec--C---CCEEEEEeCCCeEEEEEcCCC---
Q 010754 358 G-----------------------------------------PTLDVDWR--N---NVSFATSSTDNMIYVCKIGEN--- 388 (502)
Q Consensus 358 ~-----------------------------------------~v~~v~~~--~---~~~~~~~~~d~~i~i~d~~~~--- 388 (502)
. .+..+.+. . ...+++++.|+.|++|+++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~ 251 (368)
T 3mmy_A 172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA 251 (368)
T ss_dssp CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH
T ss_pred CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc
Confidence 1 12222221 1 122899999999999999988
Q ss_pred cceEEEecCCC------------cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCC
Q 010754 389 RPIKTFAGHQG------------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN 456 (502)
Q Consensus 389 ~~~~~~~~h~~------------~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~ 456 (502)
..+..+.+|.. .|++++|+|++++|++|+.||.|+|||+.+++++..+.+|..+|++++|+|+|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~--- 328 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGN--- 328 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSS---
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCC---
Confidence 56788888876 799999999999999999999999999999999999999999999999999998
Q ss_pred CCCccEEEEeecCceEEE
Q 010754 457 NPNQQLILARLIPYFLYW 474 (502)
Q Consensus 457 ~~~~~l~las~~~~~~iw 474 (502)
.+++++.++..+.|
T Consensus 329 ----~l~~~s~d~~~~~~ 342 (368)
T 3mmy_A 329 ----IFAYASSYDWSKGH 342 (368)
T ss_dssp ----CEEEEECCCSTTCG
T ss_pred ----eEEEEecccccccc
Confidence 77888877654443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=271.70 Aligned_cols=246 Identities=20% Similarity=0.337 Sum_probs=211.9
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....|.+|.+.|++++|+|++++|++|+.||.|++||+.+++.. .....|...|++++|+|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~ 86 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL-----------------GTLDGHTGTIWSIDVDCFT 86 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECTTS
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh-----------------hhhhhcCCcEEEEEEcCCC
Confidence 34678999999999999999999999999999999999876532 1123467789999999999
Q ss_pred CEEEEEECCCeEEEEECCCc-eEEEec-----------------------------------------------------
Q 010754 287 TLLATGSYDGQARIWSTNGD-LKCTLS----------------------------------------------------- 312 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~-~~~~~~----------------------------------------------------- 312 (502)
++|++++.||.|++||+... ....+.
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 99999999999999997532 211111
Q ss_pred ----CccC--CeEEEEEecCCCEEEEEecCCeEEEEEcCC-CceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEE
Q 010754 313 ----KHKG--PIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCK 384 (502)
Q Consensus 313 ----~~~~--~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d 384 (502)
.|.. .+.+++|+|++++|++++.||.|++||+++ +..+..+..|...+.+++|++++ .|++++.|+.|++||
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d 246 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEE
Confidence 1111 677888888888899999999999999988 78888888899999999998765 588999999999999
Q ss_pred cCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCeeEEEeccCCCcEEEEEEcc
Q 010754 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--------------TAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg--------------~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp 450 (502)
+.+++.+..+. +...+.+++|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|
T Consensus 247 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~ 325 (369)
T 3zwl_B 247 VSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP 325 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred CCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC
Confidence 99999998888 788999999999999999999988 899999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEeecCceEEEEee
Q 010754 451 TGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 451 ~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+|. .+++++.|+.+++|...
T Consensus 326 ~~~-------~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 326 QGT-------SYASGGEDGFIRLHHFE 345 (369)
T ss_dssp TSS-------EEEEEETTSEEEEEEEC
T ss_pred CCC-------EEEEEcCCCeEEEEECc
Confidence 998 78888889999999764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=301.35 Aligned_cols=260 Identities=22% Similarity=0.369 Sum_probs=220.8
Q ss_pred ccccCCCCceeeeCC---------CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeE
Q 010754 191 DIATTSASESFEIPN---------SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL 261 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~---------~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~ 261 (502)
.+.+.+.+..+.++. ...+.+.+|...|.+++|+|++++|++|+.|++|+|||+.++...
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~----------- 465 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST----------- 465 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-----------
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce-----------
Confidence 355666666665542 124678999999999999999999999999999999999876421
Q ss_pred EEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEe----cCccCCeEEEEEecCC--CEEEEEec
Q 010754 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL----SKHKGPIFSLKWNKKG--DYLLTGSC 335 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~v~~l~~~~~~--~~l~s~~~ 335 (502)
....+|...|++++|+|++++|++|+.|+.|++||..+.....+ .+|...|.+++|+|++ ..|++++.
T Consensus 466 ------~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 466 ------RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp ------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred ------eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 12245778899999999999999999999999999877655544 4688899999999987 68999999
Q ss_pred CCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEE
Q 010754 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA 414 (502)
Q Consensus 336 d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la 414 (502)
|++|++||++++++...+..|...|.+++|+++ ..+++++.|+.|++||+.+++.+..+. +...|.+++|+|++.+|+
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence 999999999999999999999999999999876 468899999999999999999888776 456799999999999888
Q ss_pred EEeCCCcEEEEECCCCeeEEEeccCC-------------------CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 415 SCSDDVTAKIWNMKQDKYVHDLREHS-------------------KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~~h~-------------------~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+++. +.|+|||+.+++++..+..+. ..|++++|||+|. .|++++.|+.+++|.
T Consensus 619 ~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-------~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 619 AATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-------TLFSGYTDGVIRVWG 690 (694)
T ss_dssp EEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSS-------EEEEEETTSEEEEEE
T ss_pred EEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-------EEEEEcCCCeEEEEe
Confidence 7765 559999999999888775332 1378999999998 888899999999997
Q ss_pred e
Q 010754 476 C 476 (502)
Q Consensus 476 ~ 476 (502)
.
T Consensus 691 i 691 (694)
T 3dm0_A 691 I 691 (694)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=298.97 Aligned_cols=237 Identities=22% Similarity=0.332 Sum_probs=209.0
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
.+.+.+.+++|+|+|++||+++. ++|++|++.++... ....+|...|++++|+|+|++||+|
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~-----------------~~~~~h~~~v~~~~~spdg~~lasg 77 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDT-----------------EIYTEHSHQTTVAKTSPSGYYCASG 77 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCC-----------------EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cccCceeEEeeCCCCCEEEeCCC-CEEEEecCCCcccC-----------------eEecCCCCceEEEEECCCCcEEEEE
Confidence 34677889999999999999984 69999999765421 1234577889999999999999999
Q ss_pred ECCCeEEEEECC---CceEEEecCccCCeEEEEEecCCCEEEEEecC----CeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 293 SYDGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 293 ~~dg~i~iwd~~---~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
+.||.|+|||+. ......+..|.++|.+++|+|++++|++++.+ +.|++|| ++.....+.+|...|.+++|
T Consensus 78 ~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 78 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp ETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEE
T ss_pred eCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEE
Confidence 999999999974 23456778899999999999999999998875 4788887 46667778899999999999
Q ss_pred cCCC--EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec------
Q 010754 366 RNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR------ 437 (502)
Q Consensus 366 ~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~------ 437 (502)
+|++ .+++++.|++|++||..+++.+.++.+|...|++++|+|+|++||+|+.|++|+|||+.+++++..+.
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~ 235 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 235 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSS
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccc
Confidence 9875 59999999999999999999999999999999999999999999999999999999999999988884
Q ss_pred -cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 438 -EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 438 -~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+|...|++++|+|+|. .+++++.|+.+++|+.
T Consensus 236 ~~h~~~V~~v~~spdg~-------~l~s~s~D~~v~lWd~ 268 (611)
T 1nr0_A 236 VAHSGSVFGLTWSPDGT-------KIASASADKTIKIWNV 268 (611)
T ss_dssp CSSSSCEEEEEECTTSS-------EEEEEETTSEEEEEET
T ss_pred cccCCCEEEEEECCCCC-------EEEEEeCCCeEEEEeC
Confidence 7999999999999998 7888999999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=289.38 Aligned_cols=243 Identities=16% Similarity=0.212 Sum_probs=199.7
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.++.|.++|++++|+|++++|++|+.|+.|+||++.++.. ........|...|++++|+|++++|
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~~s~~~~~l 70 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW---------------KHARTFSDHDKIVTCVDWAPKSNRI 70 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE---------------EECCCBCCCSSCEEEEEECTTTCCE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce---------------EEEEEEecCCceEEEEEEeCCCCEE
Confidence 4455778999999999999999999999999999987520 1223344678899999999999999
Q ss_pred EEEECCCeEEEEECCCce----EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc---eEEEEee-ccCCeE
Q 010754 290 ATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE---WKQQFEF-HSGPTL 361 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~-~~~~v~ 361 (502)
++|+.||.|++||+.... ...+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.
T Consensus 71 ~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 150 (377)
T 3dwl_C 71 VTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL 150 (377)
T ss_dssp EEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE
T ss_pred EEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE
Confidence 999999999999987543 67788899999999999999999999999999999999887 4677777 999999
Q ss_pred EEEecCCC-EEEEEeCCCeEEEEEcC------------------CCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 362 DVDWRNNV-SFATSSTDNMIYVCKIG------------------ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 362 ~v~~~~~~-~~~~~~~d~~i~i~d~~------------------~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
+++|++++ .+++++.|+.|++||+. .++++..+ +|...|++++|+|++++|++|+.||.|
T Consensus 151 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i 229 (377)
T 3dwl_C 151 SLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSV 229 (377)
T ss_dssp EEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEE
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcE
Confidence 99998764 68999999999999985 24456666 899999999999999999999999999
Q ss_pred EEEECCCCee----EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 423 KIWNMKQDKY----VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 423 ~iwd~~~~~~----~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++||+.++++ +..+.+|..+|.+++|+|+|. .++ ++.++.+.+|..
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~-~~~~~~~~~~~~ 279 (377)
T 3dwl_C 230 TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESA-------IVA-AGYNYSPILLQG 279 (377)
T ss_dssp C-CEECSTTSCEEECCCEECSSSCEEEEEEEETTE-------EEE-EESSSSEEEECC
T ss_pred EEEECCCCCCcceeeEeecCCCCceEEEEEcCCCC-------EEE-EEcCCcEEEEEe
Confidence 9999999987 788889999999999999987 433 344555556654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=273.43 Aligned_cols=262 Identities=17% Similarity=0.294 Sum_probs=219.8
Q ss_pred CceEEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 206 SDVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
.....+.+|.+.|++++|+| ++++|++|+.||.|++|++.++......... ............|...|++++|+|
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCK----AVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEEC----EEEEECTTCTTCCSSCEEEEEECT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecc----ccccccccccccCCCcEEEEEEcc
Confidence 34567889999999999999 9999999999999999999987643321110 011111223345788999999999
Q ss_pred -CCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCC---CEEEEEecCCeEEEEEcCCCceEEEEeeccCCe
Q 010754 285 -EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360 (502)
Q Consensus 285 -~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 360 (502)
++.+|++++.||.|++||+..........+...+.++.|+|.+ .++++++.|+.|++||+++++.+..+..|...|
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred CCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 7889999999999999998876655555688899999999854 599999999999999999999999999999999
Q ss_pred EEEEecCCC--EEEEEeCCCeEEEEEcCCCc-ceEEE---------------ecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 361 LDVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTF---------------AGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 361 ~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~-~~~~~---------------~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
.+++|++++ .+++++.||.|++||++.+. ++..+ .+|...|++++|+|++++|++++.||.|
T Consensus 190 ~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 269 (408)
T 4a11_B 190 LAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269 (408)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeE
Confidence 999998876 48899999999999998775 44444 5788999999999999999999999999
Q ss_pred EEEECCCC-----------------------------------------------eeEEEeccCCCcEEEEEEccCCCCC
Q 010754 423 KIWNMKQD-----------------------------------------------KYVHDLREHSKEIYTIRWSPTGSGT 455 (502)
Q Consensus 423 ~iwd~~~~-----------------------------------------------~~~~~~~~h~~~i~~v~~sp~g~~~ 455 (502)
++||+.++ +++..+.+|..+|++++|+|+|.
T Consensus 270 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-- 347 (408)
T 4a11_B 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ-- 347 (408)
T ss_dssp EEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTT--
T ss_pred EEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCC--
Confidence 99998654 45666778999999999999998
Q ss_pred CCCCccEEEEeecCceEEEEeee
Q 010754 456 NNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 456 ~~~~~~l~las~~~~~~iw~~~~ 478 (502)
.+++++.|+.+++|....
T Consensus 348 -----~l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 348 -----ELYSGSRDCNILAWVPSL 365 (408)
T ss_dssp -----EEEEEETTSCEEEEEECC
T ss_pred -----EEEEECCCCeEEEEeCCC
Confidence 788888899999998654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-34 Score=276.36 Aligned_cols=246 Identities=16% Similarity=0.215 Sum_probs=211.3
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.+..|.++|++++|+|++++|++|+.|+.|++|++.+++. ... .....|...|++++|+|++++|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-----------~~~----~~~~~h~~~v~~~~~~~~~~~l 67 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------VQV----HELKEHNGQVTGVDWAPDSNRI 67 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------EEE----EEEECCSSCEEEEEEETTTTEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------Eee----eeecCCCCcccEEEEeCCCCEE
Confidence 3556999999999999999999999999999999887531 011 1223567889999999999999
Q ss_pred EEEECCCeEEEEECCCce---EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce---EEEE-eeccCCeEE
Q 010754 290 ATGSYDGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW---KQQF-EFHSGPTLD 362 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~-~~~~~~v~~ 362 (502)
++|+.||.|++||+.... ...+..|...|.+++|+|++++|++++.|+.|++||++.+.. ...+ ..|...+.+
T Consensus 68 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 68 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS 147 (372)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred EEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeE
Confidence 999999999999986543 334467999999999999999999999999999999988763 2333 457889999
Q ss_pred EEecCCC-EEEEEeCCCeEEEEEc------------------CCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEE
Q 010754 363 VDWRNNV-SFATSSTDNMIYVCKI------------------GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423 (502)
Q Consensus 363 v~~~~~~-~~~~~~~d~~i~i~d~------------------~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~ 423 (502)
+.|++++ .+++++.|+.|++||+ ..++.+..+.+|...|++++|+|++++|++++.||.|+
T Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 227 (372)
T 1k8k_C 148 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVC 227 (372)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEE
Confidence 9998764 6889999999999995 36778888989999999999999999999999999999
Q ss_pred EEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
+||+++++++..+..|..+|.+++|+|+|. +++++.++.+++|...-
T Consensus 228 i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 228 LADADKKMAVATLASETLPLLAVTFITESS--------LVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEGGGTTEEEEEECSSCCEEEEEEEETTE--------EEEEETTSSCEEEEEET
T ss_pred EEECCCCceeEEEccCCCCeEEEEEecCCC--------EEEEEeCCeEEEEEccC
Confidence 999999999999999999999999999986 45555889999998654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.53 Aligned_cols=244 Identities=14% Similarity=0.169 Sum_probs=206.5
Q ss_pred ceEEeccCCCceEEEEEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-
Q 010754 207 DVTILEGHTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG- 284 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~- 284 (502)
....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++.... .....+|...|.+++|+|
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~h~~~v~~~~~~~~ 129 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS---------------FIQGMGPGDAITGMKFNQF 129 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE---------------EECCCSTTCBEEEEEEETT
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce---------------eeecCCcCCceeEEEeCCC
Confidence 456789999999999999998 999999999999999998765321 111235678899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCceEEEecCcc---CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
++++|++|+.||.|++||+.+.....+..+. ..|.+++|+|++++|++++.|+.|++||+ +++.+..+..|...|.
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence 7899999999999999999987777665544 88999999999999999999999999999 5778888999999999
Q ss_pred EEEecCCC--EEEEEeCCCeEEEEEcCC----CcceEEEecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 362 DVDWRNNV--SFATSSTDNMIYVCKIGE----NRPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 362 ~v~~~~~~--~~~~~~~d~~i~i~d~~~----~~~~~~~~~h~~~i~~l~~sp-~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
+++|++++ .+++++.|+.|++||+++ +..+..+ +|...|++++|+| ++++|++++.||.|++||+++++++.
T Consensus 209 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 209 HAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPD 287 (383)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCS
T ss_pred EEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 99998876 689999999999999998 5566666 6999999999999 99999999999999999999988776
Q ss_pred EeccCC-------C----------cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 435 DLREHS-------K----------EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 435 ~~~~h~-------~----------~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+.+|. . .+..++|+|+|. + +++.++.+++|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~--------~-s~s~d~~i~iwd~ 337 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ--------L-LLNDKRTIDIYDA 337 (383)
T ss_dssp EEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT--------T-CTTCCCCEEEEET
T ss_pred ccccccccccccccceEEeccCCCCceEEEecCCcc--------c-ccCCCCeEEEEec
Confidence 666443 2 334455555554 2 6778899999974
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=276.41 Aligned_cols=238 Identities=18% Similarity=0.314 Sum_probs=212.1
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
|.+.|++++|+|++++|++|+.||.|++|+. ++.. ......|...|++++|+|++++|++++
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~-----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGAL-----------------LNVLNFHRAPIVSVKWNKDGTHIISMD 168 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCE-----------------EEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCe-----------------eeeccCCCccEEEEEECCCCCEEEEEe
Confidence 7889999999999999999999999999993 3221 111234677899999999999999999
Q ss_pred CCCeEEEEECCCc-eE--------------------------------------------------------EEecCccC
Q 010754 294 YDGQARIWSTNGD-LK--------------------------------------------------------CTLSKHKG 316 (502)
Q Consensus 294 ~dg~i~iwd~~~~-~~--------------------------------------------------------~~~~~~~~ 316 (502)
.||.|++||+... .. ..+..|..
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 248 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG 248 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSS
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC
Confidence 9999999997532 11 23446788
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEec
Q 010754 317 PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG 396 (502)
Q Consensus 317 ~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 396 (502)
.|.+++|+|++++|++++.|+.|++||+++++.+..+..|...+.++.|++++.+++++.|+.|++||+.+++.+..+..
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 328 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV 328 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEeccc
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--------------------eEEEeccCCC--cEEEEEEccCCCC
Q 010754 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------------------YVHDLREHSK--EIYTIRWSPTGSG 454 (502)
Q Consensus 397 h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~--------------------~~~~~~~h~~--~i~~v~~sp~g~~ 454 (502)
|...|.+++|+|++++|++++.||.|++||+.+++ ++..+.+|.. .|++++|+|+|.
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 407 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN- 407 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-
T ss_pred CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-
Confidence 99999999999999999999999999999999888 8899999976 999999999998
Q ss_pred CCCCCccEEEEeecCceEEEEe
Q 010754 455 TNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 455 ~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+++++.++.+++|..
T Consensus 408 ------~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 408 ------KISVAYSLQEGSVVAI 423 (425)
T ss_dssp ------EEEEEESSSCCEEEEC
T ss_pred ------eEEEEecCceEEEEee
Confidence 7888999999999975
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=277.90 Aligned_cols=258 Identities=16% Similarity=0.180 Sum_probs=216.9
Q ss_pred ceEEeccCCCceEEEEEcCC----C---CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccC-----C
Q 010754 207 DVTILEGHTSEVCACAWSPA----G---SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK-----S 274 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~----~---~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 274 (502)
.+..+.+|...|.+++|+|+ + .+|++++.|+.|++|++.++.... ...... ...| .
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~--------~~~~~~----~~~~~~~~~~ 121 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETK--------KVIFEK----LDLLDSDMKK 121 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTC--------CEEEEE----ECCSCTTGGG
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccc--------ccccee----ecccccccCC
Confidence 47888999999999999999 9 999999999999999998765310 000111 1223 4
Q ss_pred CCeEEEEEC----CCCCE-EEEEECCCeEEEEECCC-------ceEE-----Ee-------cCccCCeEEEEEecCCCEE
Q 010754 275 KDVTTLDWN----GEGTL-LATGSYDGQARIWSTNG-------DLKC-----TL-------SKHKGPIFSLKWNKKGDYL 330 (502)
Q Consensus 275 ~~v~~l~~s----~~g~~-l~s~~~dg~i~iwd~~~-------~~~~-----~~-------~~~~~~v~~l~~~~~~~~l 330 (502)
..|.+++|+ |++++ |++|+.||.|++||+.. .... .+ ..|...|.+++|+|++ +|
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 200 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI 200 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eE
Confidence 789999999 99999 99999999999999765 3333 44 4588999999999999 99
Q ss_pred EEEecCCeEEEEEcCCCceEEEEee---c---cCCeEEEEecCC-CEEEEEeCC---CeEEEEEcCCCcceEEEec----
Q 010754 331 LTGSCDKTAIVWDVKTEEWKQQFEF---H---SGPTLDVDWRNN-VSFATSSTD---NMIYVCKIGENRPIKTFAG---- 396 (502)
Q Consensus 331 ~s~~~d~~i~~wd~~~~~~~~~~~~---~---~~~v~~v~~~~~-~~~~~~~~d---~~i~i~d~~~~~~~~~~~~---- 396 (502)
++++.|+.|++||+++++.+..+.. | ...+.+++|+++ ..+++++.| +.|++||+.+++++..+.+
T Consensus 201 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred EEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 9999999999999999999999998 8 999999999875 568888889 9999999999999999998
Q ss_pred ---------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec------cC---------------CCcEEEE
Q 010754 397 ---------HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR------EH---------------SKEIYTI 446 (502)
Q Consensus 397 ---------h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~------~h---------------~~~i~~v 446 (502)
|...|.+++|+|++++|++++.||.|+|||+.+++++..+. +| ..+|+++
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 99999999999999999999999999999999999999999 88 9999999
Q ss_pred EEccCCCCCC---CCCccEEEEeecCceEEEEee
Q 010754 447 RWSPTGSGTN---NPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 447 ~~sp~g~~~~---~~~~~l~las~~~~~~iw~~~ 477 (502)
+|+|+|.... .....+++++.|+.+++|...
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999983110 111367888889999999754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=261.28 Aligned_cols=243 Identities=19% Similarity=0.343 Sum_probs=216.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|...|.+++|+|++.+|++|+.|+.|++|++....... .......|...|.+++| ++
T Consensus 51 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~--------------~~~~~~~~~~~i~~~~~--~~ 114 (313)
T 3odt_A 51 LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGED--------------PLYTLIGHQGNVCSLSF--QD 114 (313)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC--------------C-CEECCCSSCEEEEEE--ET
T ss_pred EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC--------------cccchhhcccCEEEEEe--cC
Confidence 366788999999999999999999999999999999998753211 11222456788999999 57
Q ss_pred CEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEEee-ccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-HSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~v~ 364 (502)
+++++|+.||.|++|| .+.....+..|...|.+++|+| +++++++++.||.|++|| ..+....+.. +...+.++.
T Consensus 115 ~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~ 191 (313)
T 3odt_A 115 GVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLA 191 (313)
T ss_dssp TEEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEE
T ss_pred CEEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEE
Confidence 8999999999999999 6777788889999999999998 899999999999999999 5566777777 888999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE
Q 010754 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (502)
Q Consensus 365 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 444 (502)
|++++.+++++.|+.|++||+++++++..+.+|...|++++|+|++ .|++++.||.|++||+.+++++..+..|..+|+
T Consensus 192 ~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~ 270 (313)
T 3odt_A 192 VVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIW 270 (313)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEE
T ss_pred EcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEE
Confidence 9998889999999999999999999999999999999999999999 588999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+++|+|+|. +++++.|+.+++|...
T Consensus 271 ~~~~~~~~~--------~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 271 SVDCMSNGD--------IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEEECTTSC--------EEEEETTSCEEEEESC
T ss_pred EEEEccCCC--------EEEEeCCCcEEEEeCC
Confidence 999999986 6788899999999753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=263.06 Aligned_cols=245 Identities=16% Similarity=0.288 Sum_probs=214.7
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
...+|...|++++|+|++++|++++ ||.|++|++.++...... ... ....|...|++++|+|++++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~-------~~~-----~~~~~~~~v~~~~~~~~~~~l 112 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV-------SQL-----DCLNRDNYIRSCKLLPDGCTL 112 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS-------EEE-----ECSCTTSBEEEEEECTTSSEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee-------ecc-----cccCCCCcEEEEEEcCCCCEE
Confidence 3458999999999999999999998 999999999876532111 000 112456789999999999999
Q ss_pred EEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 290 ATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
++++.||.|++||+... ....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...+.+++|+
T Consensus 113 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 113 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp EEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred EEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC
Confidence 99999999999998754 456777899999999999999999999999999999999999999999999999999998
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEE
Q 010754 367 NNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (502)
Q Consensus 367 ~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 445 (502)
+++ .+++++.|+.|++||+++++.+..+. |...+.+++|+|++++|++++.||.|++||+.+++.. .+..|..+|.+
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~ 270 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLS 270 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEE
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeE
Confidence 765 68899999999999999999888876 7888999999999999999999999999999988764 56789999999
Q ss_pred EEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 446 IRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++|+|+|. .+++++.++.+++|..
T Consensus 271 ~~~~~~~~-------~l~~~~~dg~i~~~~~ 294 (337)
T 1gxr_A 271 LKFAYCGK-------WFVSTGKDNLLNAWRT 294 (337)
T ss_dssp EEECTTSS-------EEEEEETTSEEEEEET
T ss_pred EEECCCCC-------EEEEecCCCcEEEEEC
Confidence 99999998 7788888899999974
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=278.14 Aligned_cols=250 Identities=18% Similarity=0.261 Sum_probs=214.9
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE- 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~- 285 (502)
....+.+|.+.|++++|+| ++|++|+.||+|++|++.++..... .. .......|...|++++|+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-----~~------~~~~~~~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP-----KD------KSYSHFVHKSGLHHVDVLQAI 74 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG-----GG------GEEEEECCTTCEEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC-----CC------cceEEecCCCcEEEEEEeccc
Confidence 3567889999999999998 8999999999999999987652110 00 01112356788999999999
Q ss_pred ---C---CEEEEEECCCeEEEEECCCce------EEEecCc-----cCCeEEEEEe----cCCCE-EEEEecCCeEEEEE
Q 010754 286 ---G---TLLATGSYDGQARIWSTNGDL------KCTLSKH-----KGPIFSLKWN----KKGDY-LLTGSCDKTAIVWD 343 (502)
Q Consensus 286 ---g---~~l~s~~~dg~i~iwd~~~~~------~~~~~~~-----~~~v~~l~~~----~~~~~-l~s~~~d~~i~~wd 343 (502)
+ ++|++++.||.|++|++.... ...+..| ...|.+++|+ |++++ |++++.||.|++||
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 9 999999999999999976443 7778888 5999999999 99999 99999999999999
Q ss_pred cCC------CceEE-----EEee-------ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEec---C---CC
Q 010754 344 VKT------EEWKQ-----QFEF-------HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---H---QG 399 (502)
Q Consensus 344 ~~~------~~~~~-----~~~~-------~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---h---~~ 399 (502)
+++ ++.+. .+.. |...+.+++|++++.+++++.|+.|++||+++++++..+.. | ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~ 234 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 234 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence 998 66665 6643 78899999998877888899999999999999999999999 9 99
Q ss_pred cEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEecc-------------CCCcEEEEEEccCCCCCCCCCccEE
Q 010754 400 EVNCVKWDPTGSLLASCSDD---VTAKIWNMKQDKYVHDLRE-------------HSKEIYTIRWSPTGSGTNNPNQQLI 463 (502)
Q Consensus 400 ~i~~l~~sp~g~~las~s~d---g~i~iwd~~~~~~~~~~~~-------------h~~~i~~v~~sp~g~~~~~~~~~l~ 463 (502)
.|.+++|+|++++|++++.| |.|++||+++++++..+.+ |...|.+++|+|+|. .++
T Consensus 235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~ 307 (397)
T 1sq9_A 235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-------TLC 307 (397)
T ss_dssp CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS-------EEE
T ss_pred ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC-------EEE
Confidence 99999999999999999999 9999999999999999998 999999999999998 788
Q ss_pred EEeecCceEEEEe
Q 010754 464 LARLIPYFLYWIC 476 (502)
Q Consensus 464 las~~~~~~iw~~ 476 (502)
+++.++.+++|..
T Consensus 308 ~~~~dg~i~iwd~ 320 (397)
T 1sq9_A 308 SAGWDGKLRFWDV 320 (397)
T ss_dssp EEETTSEEEEEET
T ss_pred EEeCCCeEEEEEc
Confidence 8888999999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=279.94 Aligned_cols=238 Identities=18% Similarity=0.293 Sum_probs=206.2
Q ss_pred CCCceEEEEEcCC----CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCE
Q 010754 214 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTL 288 (502)
Q Consensus 214 H~~~V~~~~~~p~----~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~ 288 (502)
|...|++++|+|+ +.+|++|+.||.|++||+.+++.. . ....|...|++++|+| ++++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-------------~----~~~~~~~~i~~~~~~~~~~~~ 130 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI-------------K----HYVGHGNAINELKFHPRDPNL 130 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE-------------E----EEESCCSCEEEEEECSSCTTE
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe-------------e----eecCCCCcEEEEEECCCCCCE
Confidence 6688999999998 679999999999999999876521 1 1234678899999999 9999
Q ss_pred EEEEECCCeEEEEECCC-ceEEEe---cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe----------
Q 010754 289 LATGSYDGQARIWSTNG-DLKCTL---SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE---------- 354 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~-~~~~~~---~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---------- 354 (502)
|++|+.||.|++||+.. .....+ ..|...|.+++|+|++++|++++.||.|++||+++++....+.
T Consensus 131 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred EEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCC
Confidence 99999999999999874 455555 6899999999999999999999999999999998876543332
Q ss_pred ------------------eccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcc--------------eEEEecCCCcEE
Q 010754 355 ------------------FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--------------IKTFAGHQGEVN 402 (502)
Q Consensus 355 ------------------~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~--------------~~~~~~h~~~i~ 402 (502)
.|...|.++.|. +..+++++.|+.|++||+.+... +..+.+|...|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIW 289 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSS
T ss_pred cccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEE
Confidence 388899999999 67899999999999999988754 788899999999
Q ss_pred EEEEcCC--CCEEEEEeCCCcEEEEECCCCe----eEEEeccC--CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 403 CVKWDPT--GSLLASCSDDVTAKIWNMKQDK----YVHDLREH--SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 403 ~l~~sp~--g~~las~s~dg~i~iwd~~~~~----~~~~~~~h--~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
+++|+|+ +++|++|+.||.|++||+.+++ ....+.+| ..+|++++|+|+|. .+++++.|+.+++|
T Consensus 290 ~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~s~~~dg~i~iw 362 (366)
T 3k26_A 290 YMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS-------ILIAVCDDASIWRW 362 (366)
T ss_dssp CCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS-------EEEEEETTSEEEEE
T ss_pred EEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC-------eEEEEeCCCEEEEE
Confidence 9999999 9999999999999999999876 34477777 78999999999998 78888888999999
Q ss_pred Ee
Q 010754 475 IC 476 (502)
Q Consensus 475 ~~ 476 (502)
+.
T Consensus 363 d~ 364 (366)
T 3k26_A 363 DR 364 (366)
T ss_dssp EC
T ss_pred Ee
Confidence 75
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=277.57 Aligned_cols=250 Identities=26% Similarity=0.539 Sum_probs=215.3
Q ss_pred ccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEec----CCCCccCCCCCCCceeEEEeeecCcc------ccCCCCeEEE
Q 010754 212 EGHTSEVCACAWSPAGS-LLASGSGDSTARIWTI----ADGTSNGGAQNGPLNVLVLKHVKGRT------NEKSKDVTTL 280 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~l 280 (502)
..|.+.|++++|+|+++ +||+|+.||.|++|++ .+++... .......+.... ..|...|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW-------KLTIIAELRHPFALSASSGKTTNQVTCL 114 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE-------EEEEEEEEECCCCCC------CBCEEEE
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc-------cccccccccccccccccccCCCCceEEE
Confidence 34669999999999999 9999999999999999 7655210 000111111111 2256689999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC-
Q 010754 281 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP- 359 (502)
Q Consensus 281 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~- 359 (502)
+|+|++++|++|+.||.|++|+..+.....+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..+...
T Consensus 115 ~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 115 AWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 9999999999999999999999888899999999999999999999999999999999999999999999988877776
Q ss_pred --------------eEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010754 360 --------------TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 360 --------------v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iw 425 (502)
+.++.|.+++.+++++.++.|++||+.+++++..+.+|...|++++|+|++++|++++.||.|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 426 d~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+++++++..+.+|...|.+++|+|++ .+++++.++.+++|+.
T Consensus 275 d~~~~~~~~~~~~~~~~i~~~~~~~~~--------~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 275 HGGNGNSQNCFYGHSQSIVSASWVGDD--------KVISCSMDGSVRLWSL 317 (425)
T ss_dssp CSSSBSCSEEECCCSSCEEEEEEETTT--------EEEEEETTSEEEEEET
T ss_pred ECCCCccceEecCCCccEEEEEECCCC--------EEEEEeCCCcEEEEEC
Confidence 999999999999999999999999986 4788888999999974
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=269.02 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=163.6
Q ss_pred CCCeEEEEECCCCCEEEEEE--CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 274 SKDVTTLDWNGEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
...+.+++|+|||+++++|+ .|+.|+|||+..........|...|.+++|+|+|++|++++. +.+++|+..++..+.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIA 211 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccc-eeEEEEEeccCccee
Confidence 34588999999999987655 689999999886544444458889999999999999999885 556777777776654
Q ss_pred EE--eeccCCeEEEEecCCCE-EEEEeCCC----eEEEEEcCCCcc----eEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 352 QF--EFHSGPTLDVDWRNNVS-FATSSTDN----MIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 352 ~~--~~~~~~v~~v~~~~~~~-~~~~~~d~----~i~i~d~~~~~~----~~~~~~h~~~i~~l~~sp~g~~las~s~dg 420 (502)
.. ..|...+.++.|+|++. +++++.++ .+++|++..... ...+.+|...|++++|+|+|++||+|+.|+
T Consensus 212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp EECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 33 45777899999987665 66777766 688899877643 456788999999999999999999999999
Q ss_pred cEEEEECCCCeeEEEe-ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 421 TAKIWNMKQDKYVHDL-REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~-~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+|+|||+.+++++..+ .+|..+|++|+|||||. .|+++|.|++++||...
T Consensus 292 ~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~-------~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 292 SIALVKLKDLSMSKIFKQAHSFAITEVTISPDST-------YVASVSAANTIHIIKLP 342 (365)
T ss_dssp CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC-------EEEEEETTSEEEEEECC
T ss_pred EEEEEECCCCcEEEEecCcccCCEEEEEECCCCC-------EEEEEeCCCeEEEEEcC
Confidence 9999999999999885 68999999999999998 88889999999999863
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=285.18 Aligned_cols=216 Identities=17% Similarity=0.215 Sum_probs=179.6
Q ss_pred eEEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-C
Q 010754 208 VTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~ 285 (502)
.....+|...|+|++|+| ++++||+|+.||+|+|||+.++... ......+|...|++|+|+| +
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~---------------~~~~~~gH~~~V~~l~f~p~~ 176 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP---------------TFIKGIGAGGSITGLKFNPLN 176 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------EEECCCSSSCCCCEEEECSSC
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------eEEEccCCCCCEEEEEEeCCC
Confidence 345678999999999999 5789999999999999999876421 1112346788999999998 7
Q ss_pred CCEEEEEECCCeEEEEECCCceEEEecC---ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 286 GTLLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
+++|++|+.||+|++||+++.....+.. +...+.+++|+|++++|++|+.||.|++||++. +.+..+..|...|.+
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTH 255 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEE
T ss_pred CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEe
Confidence 8999999999999999998776555443 344678999999999999999999999999864 556678889999999
Q ss_pred EEecCCC--EEEEEeCCCeEEEEEcCCCcceEE---EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 363 VDWRNNV--SFATSSTDNMIYVCKIGENRPIKT---FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 363 v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~---~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
++|+|.+ .+++++.|+.|++||+++.+.... ..+|...|++++|+|+|++|++|+.||.|+|||+.++.+...+.
T Consensus 256 v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~ 335 (435)
T 4e54_B 256 VALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLI 335 (435)
T ss_dssp EEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEEC
T ss_pred eeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEe
Confidence 9998753 588999999999999988764433 35799999999999999999999999999999998776555444
Q ss_pred cC
Q 010754 438 EH 439 (502)
Q Consensus 438 ~h 439 (502)
.|
T Consensus 336 ~~ 337 (435)
T 4e54_B 336 PH 337 (435)
T ss_dssp CC
T ss_pred cc
Confidence 33
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=259.69 Aligned_cols=239 Identities=16% Similarity=0.247 Sum_probs=209.7
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
+|...|.+++|+|++++|++++.|+.|++|++.+++.. .......|...|++++|+|++++|+++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR---------------IKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E---------------EEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc---------------eeeecccCCCceEEEEECCCCCEEEEE
Confidence 89999999999999999999999999999999875421 111223456789999999999999999
Q ss_pred ECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-E
Q 010754 293 SYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-S 370 (502)
Q Consensus 293 ~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~ 370 (502)
+.||.|++||+.. .....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+. +...+.++.|++++ .
T Consensus 160 ~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~ 238 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEW 238 (337)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSE
T ss_pred eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCE
Confidence 9999999999864 5667788899999999999999999999999999999999998887764 67789999997754 6
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEcc
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp 450 (502)
+++++.++.|++||+.++.. ..+..|...|++++|+|++++|++++.||.|++||+.+++.+... .|..+|.+++|+|
T Consensus 239 l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 239 LAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV 316 (337)
T ss_dssp EEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT
T ss_pred EEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC
Confidence 88889999999999998765 467789999999999999999999999999999999999888554 4888999999999
Q ss_pred CCCCCCCCCccEEEEeecCceEEEEe
Q 010754 451 TGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 451 ~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+|. .+++++.++.+++|..
T Consensus 317 ~~~-------~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 317 DDK-------YIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSC-------EEEEEETTSCEEEEEE
T ss_pred CCC-------EEEEecCCCeEEEEEE
Confidence 998 7888888999999975
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=269.57 Aligned_cols=250 Identities=18% Similarity=0.228 Sum_probs=211.7
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.. .......|...|++++|+|++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~ 108 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK---------------PTLVILRINRAARCVRWAPNE 108 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---------------EEEECCCCSSCEEEEEECTTS
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeee---------------eeEEeecCCCceeEEEECCCC
Confidence 67788999999999999999999999999999999999765421 011123456789999999999
Q ss_pred CEEEEEECCCeEEEEECCCce-----EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEc-----------------
Q 010754 287 TLLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV----------------- 344 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~----------------- 344 (502)
++|++|+.||.|++||++... ......|...|.+++|+|++++|++++.||.|++||+
T Consensus 109 ~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~ 188 (372)
T 1k8k_C 109 KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 188 (372)
T ss_dssp SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccc
Confidence 999999999999999976432 3334678999999999999999999999999999995
Q ss_pred -CCCceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 345 -KTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 345 -~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
..++.+..+..|...+.+++|++++ .+++++.|+.|++||+++++++..+..|...|++++|+|++.+|++| .||.|
T Consensus 189 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 267 (372)
T 1k8k_C 189 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFP 267 (372)
T ss_dssp CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSC
T ss_pred cchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeE
Confidence 4678888888899999999998765 78999999999999999999999999999999999999999988888 89999
Q ss_pred EEEECCC--Cee--------------------------------E------EEe-ccCCCcEEEEEEc-cCCCCCCCCCc
Q 010754 423 KIWNMKQ--DKY--------------------------------V------HDL-REHSKEIYTIRWS-PTGSGTNNPNQ 460 (502)
Q Consensus 423 ~iwd~~~--~~~--------------------------------~------~~~-~~h~~~i~~v~~s-p~g~~~~~~~~ 460 (502)
++|++.+ ++. . ..+ .+|..+|++++|+ ++|. ...
T Consensus 268 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~----~~~ 343 (372)
T 1k8k_C 268 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA----KCS 343 (372)
T ss_dssp EEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT----SCS
T ss_pred EEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCc----cee
Confidence 9999987 431 0 233 3899999999977 5550 112
Q ss_pred cEEEEeecCceEEEEe
Q 010754 461 QLILARLIPYFLYWIC 476 (502)
Q Consensus 461 ~l~las~~~~~~iw~~ 476 (502)
.+++++.|+.+++|..
T Consensus 344 ~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 344 QFCTTGMDGGMSIWDV 359 (372)
T ss_dssp EEEEEETTSEEEEEEH
T ss_pred eEEEecCCCceEEEEe
Confidence 7888888999999975
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-34 Score=302.45 Aligned_cols=248 Identities=26% Similarity=0.406 Sum_probs=210.8
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC--
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-- 285 (502)
+.++.+|.+.|++++|+|++++|++|+.||+|+||++.++.. .......+|...|++++|+|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------~~~~~l~~h~~~V~~l~~s~~~~ 66 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------KLIDTLTGHEGPVWRVDWAHPKF 66 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE---------------EEEEEECCCSSCEEEEEECCTTS
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC---------------ccceeccCCcCceEEEEecCCCC
Confidence 357899999999999999999999999999999999874321 112233457789999999988
Q ss_pred CCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEcCCC--ceEEEEeeccC
Q 010754 286 GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDVKTE--EWKQQFEFHSG 358 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~ 358 (502)
+++|++|+.||.|++||+.+. ....+..|...|.+++|+|+ ++++++|+.||.|++||++++ .....+..|..
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 999999999999999998764 56778889999999999999 999999999999999999877 34556678899
Q ss_pred CeEEEEecC--------------CCEEEEEeCCCeEEEEEcCCC----cceEEEecCCCcEEEEEEcCC---CCEEEEEe
Q 010754 359 PTLDVDWRN--------------NVSFATSSTDNMIYVCKIGEN----RPIKTFAGHQGEVNCVKWDPT---GSLLASCS 417 (502)
Q Consensus 359 ~v~~v~~~~--------------~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~h~~~i~~l~~sp~---g~~las~s 417 (502)
.|.++.|++ +..+++++.||.|++||++++ .++..+.+|...|++++|+|+ +++|++|+
T Consensus 147 ~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s 226 (753)
T 3jro_A 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226 (753)
T ss_dssp CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe
Confidence 999999988 567999999999999999887 456778899999999999999 89999999
Q ss_pred CCCcEEEEECCCCe-----eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 418 DDVTAKIWNMKQDK-----YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 418 ~dg~i~iwd~~~~~-----~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.||.|++||+.++. .+.....|...|++++|+|+|. .+++++.|+.+++|...
T Consensus 227 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-------~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-------VLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-------CEEEECSSSCEECCBCC
T ss_pred cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-------EEEEEcCCCEEEEEecC
Confidence 99999999998864 3334446889999999999998 78888999999999865
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=281.04 Aligned_cols=247 Identities=18% Similarity=0.344 Sum_probs=214.1
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-CCEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-GTLLA 290 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-g~~l~ 290 (502)
..|...|.+++|+|++.+|++|+.||.|++|++.+..... ........|...|++++|+|+ +++|+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~l~ 130 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI-------------NSMARFSNHSSSVKTVKFNAKQDNVLA 130 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCC-------------CEEEECCCSSSCCCEEEECSSSTTBEE
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccc-------------cchhhccCCccceEEEEEcCCCCCEEE
Confidence 3689999999999999999999999999999998632100 011223456788999999998 89999
Q ss_pred EEECCCeEEEEECCCce-------EE---EecCccCCeEEEEEecC-CCEEEEEecCCeEEEEEcCCCceEEEEeec---
Q 010754 291 TGSYDGQARIWSTNGDL-------KC---TLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--- 356 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~-------~~---~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--- 356 (502)
+|+.||.|++||+.... .. ....|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+
T Consensus 131 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 210 (416)
T 2pm9_A 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210 (416)
T ss_dssp EECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS
T ss_pred EEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc
Confidence 99999999999987543 22 23578999999999998 789999999999999999999999888876
Q ss_pred ---cCCeEEEEecCCC--EEEEEeCCC---eEEEEEcCCC-cceEEEe-cCCCcEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 010754 357 ---SGPTLDVDWRNNV--SFATSSTDN---MIYVCKIGEN-RPIKTFA-GHQGEVNCVKWDP-TGSLLASCSDDVTAKIW 425 (502)
Q Consensus 357 ---~~~v~~v~~~~~~--~~~~~~~d~---~i~i~d~~~~-~~~~~~~-~h~~~i~~l~~sp-~g~~las~s~dg~i~iw 425 (502)
...+.+++|++++ .+++++.|+ .|++||++++ .++..+. +|...|++++|+| ++++|++++.||.|++|
T Consensus 211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEE
T ss_pred cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEe
Confidence 7889999998874 789999998 9999999986 6778888 8999999999999 99999999999999999
Q ss_pred ECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 426 d~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|+++++++..+.+|...|++++|+|++. ..+++++.|+.+++|...
T Consensus 291 d~~~~~~~~~~~~~~~~v~~~~~s~~~~------~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 291 NPESAEQLSQFPARGNWCFKTKFAPEAP------DLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CSSSCCEEEEEECSSSCCCCEEECTTCT------TEEEECCSSSEEEEEESC
T ss_pred eCCCCccceeecCCCCceEEEEECCCCC------CEEEEEecCCcEEEEEcc
Confidence 9999999999999999999999999983 267777888999999754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=271.63 Aligned_cols=245 Identities=14% Similarity=0.084 Sum_probs=212.5
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC-
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT- 287 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~- 287 (502)
....+|.+.|++++|+|++.+|++|+.|+.|++|++.++... .... ....|...|++++|+|+++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------~~~~----~~~~~~~~v~~~~~~~~~~~ 70 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLL----QSLRYKHPLLCCNFIDNTDL 70 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEE----EEEECSSCEEEEEEEESSSE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------ccce----eeeecCCceEEEEECCCCCc
Confidence 345689999999999999999999999999999999875410 0111 1124677899999999999
Q ss_pred EEEEEECCCeEEEEEC-CCceEEEecC--ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC---------CceEEEEee
Q 010754 288 LLATGSYDGQARIWST-NGDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT---------EEWKQQFEF 355 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~-~~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~ 355 (502)
+|++|+.||.|++||+ .......+.. |...|.+++|+| +++|++++.|+.|++||+++ ++++..+.
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred EEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 9999999999999999 8877888888 999999999999 99999999999999999987 66666665
Q ss_pred ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCC-Cc--ceEEEecCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-
Q 010754 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE-NR--PIKTFAGHQGEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQD- 430 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~-~~--~~~~~~~h~~~i~~l~~sp-~g~~las~s~dg~i~iwd~~~~- 430 (502)
+...+.+++|+++. +++++.++.|++||+++ +. .......|...|.+++|+| ++++|++|+.||.|++|+++..
T Consensus 149 ~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~ 227 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227 (342)
T ss_dssp SCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTC
T ss_pred eCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCC
Confidence 78899999999887 99999999999999998 54 3344556888999999999 9999999999999999999887
Q ss_pred -----eeEEEeccCCC---------cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 431 -----KYVHDLREHSK---------EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 431 -----~~~~~~~~h~~---------~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+.+..+..|.. +|.+++|+|+|. .+++++.++.+++|+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-------~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-------FLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------CEEEEETTSCEEEEETT
T ss_pred cccccccceeeecccccccccccceeEEEEEEcCCCC-------EEEEecCCceEEEEcCc
Confidence 77788887765 999999999998 78888889999999753
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=298.68 Aligned_cols=246 Identities=21% Similarity=0.319 Sum_probs=222.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..+.+.+|.+.|.+++|+|++++||+|+.||.|+|||+.++... . ....|...|++++|+|++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~-------------~----~~~~~~~~v~~~~~s~~~ 67 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV-------------R----SIQVTETPVRAGKFIARK 67 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-------------E----EEECCSSCEEEEEEEGGG
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE-------------E----EEecCCCcEEEEEEeCCC
Confidence 45788999999999999999999999999999999999876521 1 122467789999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~ 364 (502)
++|++|+.||.|++||+. +.....+..|...|.+++|+|++++|++++.||.|++||+.++ .....+..|...+.+++
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 999999999999999976 5667788899999999999999999999999999999999887 67778888999999999
Q ss_pred ecC-C-CEEEEEeCCCeEEEEEcCCCcceEEEecCC-CcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEeccC
Q 010754 365 WRN-N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQ-GEVNCVKWDP--TGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 365 ~~~-~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-~~i~~l~~sp--~g~~las~s~dg~i~iwd~~~~~~~~~~~~h 439 (502)
|+| + ..+++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|++|+.||.|++||+.+++++..+.+|
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 988 4 469999999999999999988888887665 8899999999 9999999999999999999999999999999
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..+|.+++|+|+|. .+++++.++.+++|..
T Consensus 228 ~~~v~~~~~~~~~~-------~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 228 MSNVSFAVFHPTLP-------IIISGSEDGTLKIWNS 257 (814)
T ss_dssp SSCEEEEEECSSSS-------EEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCC-------EEEEEeCCCeEEEEEC
Confidence 99999999999998 7788888999999964
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=270.09 Aligned_cols=243 Identities=22% Similarity=0.372 Sum_probs=211.2
Q ss_pred eEEecc-CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEG-HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~-H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
...+.. |...|.+++|+|++++|++|+.||.|++||+.+++.. . ....|...|.+++| ++
T Consensus 126 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~----~~~~~~~~v~~~~~--~~ 186 (401)
T 4aez_A 126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL-------------R----TMAGHQARVGCLSW--NR 186 (401)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-------------E----EECCCSSCEEEEEE--ET
T ss_pred eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE-------------E----EecCCCCceEEEEE--CC
Confidence 344444 8999999999999999999999999999999876532 1 12356788999999 46
Q ss_pred CEEEEEECCCeEEEEECC--CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
++|++|+.||.|++||++ ......+..|...|.+++|+|++++|++|+.|+.|++||++++..+..+..|...|.+++
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~ 266 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence 799999999999999986 456778889999999999999999999999999999999999999999999999999999
Q ss_pred ecCC--CEEEEEe--CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEE--Ee
Q 010754 365 WRNN--VSFATSS--TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVH--DL 436 (502)
Q Consensus 365 ~~~~--~~~~~~~--~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s--~dg~i~iwd~~~~~~~~--~~ 436 (502)
|+++ ..+++++ .|+.|++||+.+++++..+. +...|++++|+|++++|++++ .||.|+|||+.+++... .+
T Consensus 267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~ 345 (401)
T 4aez_A 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345 (401)
T ss_dssp ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE
T ss_pred ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe
Confidence 9884 3455654 69999999999999998887 667899999999999999954 89999999999976554 46
Q ss_pred ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 437 REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 437 ~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.+|...|.+++|+|+|. .+++++.|+.+++|...
T Consensus 346 ~~h~~~v~~~~~s~dg~-------~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 346 PAHDTRVLYSALSPDGR-------ILSTAASDENLKFWRVY 379 (401)
T ss_dssp ECCSSCCCEEEECTTSS-------EEEEECTTSEEEEEECC
T ss_pred cCCCCCEEEEEECCCCC-------EEEEEeCCCcEEEEECC
Confidence 68999999999999998 78888889999999754
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=286.26 Aligned_cols=259 Identities=12% Similarity=0.091 Sum_probs=201.3
Q ss_pred EEeccCCCceEEEEEcCC------CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 209 TILEGHTSEVCACAWSPA------GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~------~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
..+.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++...... ............+|...|++++|
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~------~~~~~~p~~~l~~h~~~v~sv~~ 274 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV------FKMCEKPSLTLSLADSLITTFDF 274 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE------EECCCSCSEEECCTTTCEEEEEE
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc------ceeecCceEEEEcCCCCEEEEEe
Confidence 456788999999999996 579999999999999999876432100 00000011123456788999999
Q ss_pred CCCCCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEE--EEecCC-CEEEEEecCCeEEEEEcCCCceEEEEeecc
Q 010754 283 NGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSL--KWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l--~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
++++ .|++|+.||+|++||++. .....+..|...|.++ .|+|++ .+|++|+.|++|+|||++++++...+..|.
T Consensus 275 s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 275 LSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp SSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred cCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence 9864 899999999999999874 3345678999999999 578887 899999999999999999988777777665
Q ss_pred C--CeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----
Q 010754 358 G--PTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----- 429 (502)
Q Consensus 358 ~--~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~----- 429 (502)
. .+.+++|+|+ ..+++++.|++|++||++++..+.++.+|.+.|++|+|+|+|++|++|+.||+|+|||+..
T Consensus 354 ~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~ 433 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHG 433 (524)
T ss_dssp SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTC
T ss_pred ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccc
Confidence 3 4788999984 5688999999999999999999889999999999999999999999999999999998521
Q ss_pred ---------------------------------------CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCc
Q 010754 430 ---------------------------------------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPY 470 (502)
Q Consensus 430 ---------------------------------------~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~ 470 (502)
+.++..+.+|..+|++|+|+|++. ....+..|+.++.
T Consensus 434 ~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~----~~~~lAsg~~~g~ 509 (524)
T 2j04_B 434 IKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA----GGKCYAFSNSAGL 509 (524)
T ss_dssp C------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTT----TTTEEEEECTTSE
T ss_pred cccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCC----ccHHHHhhccCce
Confidence 112234456778888899999863 1124566666688
Q ss_pred eEEEEeee
Q 010754 471 FLYWICSI 478 (502)
Q Consensus 471 ~~iw~~~~ 478 (502)
+++|.+..
T Consensus 510 vrlw~l~~ 517 (524)
T 2j04_B 510 LTLEYLSL 517 (524)
T ss_dssp EEEEECSC
T ss_pred EEEEEccc
Confidence 99997644
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=290.56 Aligned_cols=241 Identities=16% Similarity=0.103 Sum_probs=196.4
Q ss_pred CCCceEEEEEcCCC---------CeEEE-------------------EeCCCcEEEEecCCCCccCCCCCCCceeEEEee
Q 010754 214 HTSEVCACAWSPAG---------SLLAS-------------------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265 (502)
Q Consensus 214 H~~~V~~~~~~p~~---------~~l~s-------------------gs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 265 (502)
+.+.|.+++|+|++ ++||+ ++.|++|+||++.+++... .
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~----------~--- 198 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC----------V--- 198 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE----------E---
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc----------e---
Confidence 56777788887765 45555 5678999999987754210 0
Q ss_pred ecCccccCCCCeEEEEECCC------CCEEEEEECCCeEEEEECCCce------------EEEecCccCCeEEEEEecCC
Q 010754 266 VKGRTNEKSKDVTTLDWNGE------GTLLATGSYDGQARIWSTNGDL------------KCTLSKHKGPIFSLKWNKKG 327 (502)
Q Consensus 266 ~~~~~~~~~~~v~~l~~s~~------g~~l~s~~~dg~i~iwd~~~~~------------~~~~~~~~~~v~~l~~~~~~ 327 (502)
.......|...|.+++|+|+ +.+||+|+.||+|+|||+.... ...+.+|...|++++|+++
T Consensus 199 ~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~- 277 (524)
T 2j04_B 199 KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP- 277 (524)
T ss_dssp EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-
T ss_pred EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-
Confidence 00111234577999999996 5799999999999999986431 2367789999999999986
Q ss_pred CEEEEEecCCeEEEEEcCCCc-eEEEEeeccCCeEEE--EecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecCCC--c
Q 010754 328 DYLLTGSCDKTAIVWDVKTEE-WKQQFEFHSGPTLDV--DWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQG--E 400 (502)
Q Consensus 328 ~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~v--~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~--~ 400 (502)
..|++|+.||+|++||++++. +...+..|...|.+| .|+++ ..|++++.|++|++||+++++++.++.+|.. .
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~ 357 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN 357 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence 589999999999999998764 456688999999999 56775 4789999999999999999988888887764 5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
|.+++|+|+++.|++++.|++|++||++++.++..+.+|..+|++|+|||+|+ .+++|+.|+.+++|.
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~-------~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP-------MVLAGSADGSLIITN 425 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC-------BCEEEETTTEEECCB
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC-------eEEEEECCCEEEEEe
Confidence 88999999999999999999999999999999888999999999999999998 788999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=270.76 Aligned_cols=240 Identities=19% Similarity=0.236 Sum_probs=202.6
Q ss_pred ccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 212 EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 212 ~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
.+|.+.|.+++|+| ++.+|++++.|+.|++||+.+... ..+. ....+...|.+++|+|++++|+
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------------~~~~-~~~~~~~~v~~~~~~~~~~~l~ 179 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI--------------QVFA-KTDSWDYWYCCVDVSVSRQMLA 179 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE--------------EEEE-CCCCSSCCEEEEEEETTTTEEE
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce--------------EEEe-ccCCCCCCeEEEEECCCCCEEE
Confidence 47999999999999 689999999999999999985321 1111 1123457799999999999999
Q ss_pred EEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCC----CceEEEEeeccCCeEEEEe
Q 010754 291 TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKT----EEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~----~~~~~~~~~~~~~v~~v~~ 365 (502)
+|+.||.|++||+++.....+..|...|.+++|+|+++ +|++++.|+.|++||+++ +.++..+ .|...+.+++|
T Consensus 180 ~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~ 258 (383)
T 3ei3_B 180 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYF 258 (383)
T ss_dssp EEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEE
T ss_pred EECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEE
Confidence 99999999999999889999999999999999999998 999999999999999988 6666666 68999999999
Q ss_pred cC-C-CEEEEEeCCCeEEEEEcCCCcceEEEecCC-----------------CcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 366 RN-N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----------------GEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 366 ~~-~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-----------------~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
++ + ..+++++.|+.|++||++++..+..+.+|. ..+..++|+|++++ +|+.||.|+|||
T Consensus 259 s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 259 NPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp CTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred cCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence 87 4 568899999999999999988877777653 34445667777766 778999999999
Q ss_pred CCCCeeEEEecc--CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 427 MKQDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 427 ~~~~~~~~~~~~--h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+.+++++..+.+ |...+..++|+|+|. .|+++ +|+.+++|...
T Consensus 337 ~~~~~~~~~l~~~~~~~~~~~~~~s~~g~-------~l~s~-sd~~i~iw~~~ 381 (383)
T 3ei3_B 337 ANSGGLVHQLRDPNAAGIISLNKFSPTGD-------VLASG-MGFNILIWNRE 381 (383)
T ss_dssp TTTCCEEEEECBTTBCSCCCEEEECTTSS-------EEEEE-ETTEEEEEECC
T ss_pred cCCCceeeeecCCCCCceEEEEEEecCcc-------EEEEe-cCCcEEEEecC
Confidence 999999999986 557788889999998 55555 48899999754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=269.95 Aligned_cols=239 Identities=24% Similarity=0.434 Sum_probs=207.9
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+.+|...|++++|+|+|++||+|+.||+|+|||+.+++.. ....+|...+.+++|+ +.+|+
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~-----------------~~~~~h~~~v~~~s~~--~~~l~ 203 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-----------------RNMTSHSARVGSLSWN--SYILS 203 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEEE--TTEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE-----------------EEEeCCCCceEEEeeC--CCEEE
Confidence 4578889999999999999999999999999999887532 1223567788888875 67999
Q ss_pred EEECCCeEEEEECC--CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc----eEEEEeeccCCeEEEE
Q 010754 291 TGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVD 364 (502)
Q Consensus 291 s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~v~ 364 (502)
+|+.|+.+++||.. ......+.+|...+..+.|+|+++++++++.|+.|++||..+++ .+.....|...|.++.
T Consensus 204 sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~ 283 (420)
T 4gga_A 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283 (420)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEE
T ss_pred EEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeee
Confidence 99999999999976 35567788999999999999999999999999999999998765 3566778899999999
Q ss_pred ecCC--CEEEE--EeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEecc
Q 010754 365 WRNN--VSFAT--SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 365 ~~~~--~~~~~--~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s--~dg~i~iwd~~~~~~~~~~~~ 438 (502)
|.+. ..+++ |+.|++|++||+.++.++..+..| ..+.++.|+|+++.|++++ .||.|+|||+.+++++..+.+
T Consensus 284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g 362 (420)
T 4gga_A 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 362 (420)
T ss_dssp ECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred eCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC
Confidence 9774 34554 357999999999999999888855 5788999999999988776 689999999999999999999
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|.++|++++|+|+|. .|++|+.|+++++|..
T Consensus 363 H~~~V~~l~~spdg~-------~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 363 HTSRVLSLTMSPDGA-------TVASAAADETLRLWRC 393 (420)
T ss_dssp CSSCEEEEEECTTSS-------CEEEEETTTEEEEECC
T ss_pred CCCCEEEEEEcCCCC-------EEEEEecCCeEEEEEC
Confidence 999999999999998 8899999999999975
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=259.16 Aligned_cols=238 Identities=25% Similarity=0.341 Sum_probs=210.0
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
...+.+.+|.+.|++++| |++.+|++|+.||.|++||+.++... .....|...|.+++|+|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~-----------------~~~~~~~~~v~~~~~~~~ 70 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG-----------------TVVYTGQGFLNSVCYDSE 70 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE-----------------EEEEECSSCEEEEEEETT
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE-----------------EEeecCCccEEEEEECCC
Confidence 456889999999999999 99999999999999999999765421 112235678999999999
Q ss_pred CCEEEEEECCCeEEEEECCC----ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 286 GTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
+++|++|+.||.|++|++.. .....+..|...|.++.| ++++|++++.|+.|++|| .+.....+..|...+.
T Consensus 71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVW 146 (313)
T ss_dssp TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEE
T ss_pred CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCcee
Confidence 99999999999999999753 446678899999999999 468999999999999999 7788888999999999
Q ss_pred EEEecC--CCEEEEEeCCCeEEEEEcCCCcceEEEec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 362 DVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 362 ~v~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
++.|.+ +..+++++.|+.|++|| ....+..+.. |...|.+++|+|++. |++++.||.|++||+++++++..+.+
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc
Confidence 999965 67899999999999999 5567777777 899999999999998 99999999999999999999999999
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|..+|++++|+|+|. +++++.++.+++|+.
T Consensus 224 ~~~~i~~~~~~~~~~--------l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 224 HESFVYCIKLLPNGD--------IVSCGEDRTVRIWSK 253 (313)
T ss_dssp CSSCEEEEEECTTSC--------EEEEETTSEEEEECT
T ss_pred CCceEEEEEEecCCC--------EEEEecCCEEEEEEC
Confidence 999999999999974 788888999999963
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=274.43 Aligned_cols=257 Identities=18% Similarity=0.333 Sum_probs=212.9
Q ss_pred eEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
...+.+|.+.|++++|+|+ +.+||+|+.||.|++|++.+............ .......|...|++++|+|++
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~-------~~~~~~~h~~~v~~l~~~~~~ 193 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ-------PDLRLRGHQKEGYGLSWNPNL 193 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCC-------CSEEEECCSSCCCCEEECTTS
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCC-------CcEEecCCCCCeEEEEeCCCC
Confidence 3456789999999999997 78999999999999999976321110000000 111223567789999999999
Q ss_pred C-EEEEEECCCeEEEEECCCc--------eEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCC---ceEEEE
Q 010754 287 T-LLATGSYDGQARIWSTNGD--------LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTE---EWKQQF 353 (502)
Q Consensus 287 ~-~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~---~~~~~~ 353 (502)
. +|++|+.||.|++|++... ....+..|...|.+++|+| ++.+|++++.||.|++||++++ ..+..+
T Consensus 194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~ 273 (430)
T 2xyi_A 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV 273 (430)
T ss_dssp TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE
T ss_pred CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe
Confidence 8 9999999999999998751 1356778999999999999 6789999999999999999987 577788
Q ss_pred eeccCCeEEEEecCCC--EEEEEeCCCeEEEEEcCC-CcceEEEecCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCC
Q 010754 354 EFHSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGE-NRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 354 ~~~~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~~i~~l~~sp~g~-~las~s~dg~i~iwd~~~ 429 (502)
..|...+.+++|++++ .+++++.||.|++||+++ ..++..+.+|...|++++|+|++. +|++++.||.|+|||+..
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 8899999999998865 588999999999999998 567899999999999999999985 799999999999999987
Q ss_pred --------------CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 430 --------------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 430 --------------~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
..++..+.+|...|++++|+|++. ..+++++.|+.+++|...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~------~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP------WIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST------TEEEEEETTSEEEEEEEC
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCC------CEEEEEECCCCEEEeEcc
Confidence 367778889999999999999986 245667778889999753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=272.89 Aligned_cols=252 Identities=18% Similarity=0.300 Sum_probs=207.8
Q ss_pred ceEEeccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..+.+|.+.|++++|+| ++.+|++|+.||+|+||++.++....... .......+|...|++++|+|+
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~----------~~~~~~~~h~~~v~~~~~~p~ 142 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR----------EPVITLEGHTKRVGIVAWHPT 142 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC----------SCSEEEECCSSCEEEEEECSS
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC----------CceEEecCCCCeEEEEEECcC
Confidence 4566889999999999999 89999999999999999998874322110 011223456788999999999
Q ss_pred C-CEEEEEECCCeEEEEECCC-ceEEEe--cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE-eeccCC-
Q 010754 286 G-TLLATGSYDGQARIWSTNG-DLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGP- 359 (502)
Q Consensus 286 g-~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~- 359 (502)
+ ++|++|+.||.|++||+.. .....+ ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|.+.
T Consensus 143 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 143 AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222 (402)
T ss_dssp BTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSS
T ss_pred CCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCc
Confidence 8 6999999999999999874 556677 789999999999999999999999999999999999999888 677765
Q ss_pred eEEEEecCCCEEEEE----eCCCeEEEEEcCCCcc-eEEEe-cCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee
Q 010754 360 TLDVDWRNNVSFATS----STDNMIYVCKIGENRP-IKTFA-GHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 360 v~~v~~~~~~~~~~~----~~d~~i~i~d~~~~~~-~~~~~-~h~~~i~~l~~sp~g~~las-~s~dg~i~iwd~~~~~~ 432 (502)
+..+.|++++.+++. +.|+.|++||+++... +.... .|...|.+++|+|++++|++ |+.||.|++||+.+++.
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 899999888775554 4899999999998764 44443 47788999999999999965 55799999999998874
Q ss_pred -EEEecc--CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 433 -VHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 433 -~~~~~~--h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+..+.. |..+|.+++|+|++. ++++.++.+++|.+.
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp~~~---------~~~s~~~~~~~~~l~ 341 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMPKRG---------LEVNKCEIARFYKLH 341 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECCGGG---------SCGGGTEEEEEEEEE
T ss_pred ceEeecccccCCcccceEEecccc---------cceecceeEEEEEcC
Confidence 444443 568999999999998 566788889999754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=277.01 Aligned_cols=253 Identities=18% Similarity=0.235 Sum_probs=206.0
Q ss_pred eeeCCCceEEe-ccCCCceEEEEEcC-CCCeEEEEeCCCcEEEEecCC---CCccCCCCCCCceeEEEeeecCccccCCC
Q 010754 201 FEIPNSDVTIL-EGHTSEVCACAWSP-AGSLLASGSGDSTARIWTIAD---GTSNGGAQNGPLNVLVLKHVKGRTNEKSK 275 (502)
Q Consensus 201 ~~~~~~~~~~l-~~H~~~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (502)
+......+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+ +.... ......|..
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~---------------~~~~~~h~~ 112 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS---------------SSLTYDCSS 112 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS---------------CSEEEECSS
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc---------------eeeeccCCC
Confidence 34445667788 89999999999999 999999999999999999876 22100 001113678
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECC----CceEEEecC------------ccCCeEEEE--EecCCCEEEEEecCC
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN----GDLKCTLSK------------HKGPIFSLK--WNKKGDYLLTGSCDK 337 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~----~~~~~~~~~------------~~~~v~~l~--~~~~~~~l~s~~~d~ 337 (502)
.|++++|+|++++|++|+.||.|++||+. +.....+.. +...+.++. +++++.+|++++.|+
T Consensus 113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 192 (437)
T 3gre_A 113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192 (437)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC
Confidence 89999999999999999999999999973 333332221 445666666 557899999999999
Q ss_pred eEEEEEcCCCceEEEEee--ccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcC----C
Q 010754 338 TAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDP----T 409 (502)
Q Consensus 338 ~i~~wd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp----~ 409 (502)
.|++||+++++.+..+.. |...|.+++|++++ .+++++.||.|++||+++++++..+. .|...|++++|+| +
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~ 272 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKN 272 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCC
Confidence 999999999999999988 88999999998764 58899999999999999999999886 7888999996665 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEeccCCCc--------------------------EEEEEEccCCCCCCCCCccEE
Q 010754 410 GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE--------------------------IYTIRWSPTGSGTNNPNQQLI 463 (502)
Q Consensus 410 g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~--------------------------i~~v~~sp~g~~~~~~~~~l~ 463 (502)
+.+|++|+.||.|+|||+++++++..+.+|... |++++|+ ++. .++
T Consensus 273 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-------~l~ 344 (437)
T 3gre_A 273 SVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-------ILL 344 (437)
T ss_dssp EEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-------EEE
T ss_pred ccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-------EEE
Confidence 789999999999999999999998888765544 5555555 333 788
Q ss_pred EEeecCceEEEEe
Q 010754 464 LARLIPYFLYWIC 476 (502)
Q Consensus 464 las~~~~~~iw~~ 476 (502)
+++.|+.+++|+.
T Consensus 345 s~~~d~~i~~wd~ 357 (437)
T 3gre_A 345 TDEATSSIVMFSL 357 (437)
T ss_dssp EEGGGTEEEEEET
T ss_pred ecCCCCeEEEEEC
Confidence 8888999999974
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-32 Score=263.73 Aligned_cols=241 Identities=14% Similarity=0.270 Sum_probs=204.6
Q ss_pred ccCCCceEEEEEcCC---CCeEEEEeCCCcEEEEecCCCC-ccCCCCCCCceeEEEeeecCccccCCCCeEEEE------
Q 010754 212 EGHTSEVCACAWSPA---GSLLASGSGDSTARIWTIADGT-SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD------ 281 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~---~~~l~sgs~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~------ 281 (502)
.+|...|.+++|+|+ +.+|++|+.||.|++|++.++. .. .....|...|.+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~v~~~~~~~~~~ 124 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV-----------------YSVKGHKEIINAIDGIGGLG 124 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCS-----------------EEECCCSSCEEEEEEESGGG
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccE-----------------EEEEecccceEEEeeccccc
Confidence 489999999999998 6999999999999999998765 21 11235677899995
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCc--eEEEecCccC----CeEEEE----EecCCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 282 WNGEGTLLATGSYDGQARIWSTNGD--LKCTLSKHKG----PIFSLK----WNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 282 ~s~~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~----~v~~l~----~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
|+|++++|++|+.||.|++||+... ....+..|.+ .|.+++ |+|++++|++++.||.|++||+++++...
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence 5789999999999999999998753 4666665554 899998 78899999999999999999999988754
Q ss_pred EEeeccCCeEEEEecC----CCEEEEEeCCCeEEEEEcCCCcceEEEe-----cCCCcEEEEEEcCCCC-EEEEEeCCCc
Q 010754 352 QFEFHSGPTLDVDWRN----NVSFATSSTDNMIYVCKIGENRPIKTFA-----GHQGEVNCVKWDPTGS-LLASCSDDVT 421 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~----~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~h~~~i~~l~~sp~g~-~las~s~dg~ 421 (502)
...+...+.+++|++ +..+++++.|+.|++||+++++++..+. +|...|++++|+|+++ +|++|+.||.
T Consensus 205 -~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 283 (357)
T 3i2n_A 205 -ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG 283 (357)
T ss_dssp -EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred -ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence 456888999999986 5779999999999999999887766655 8999999999999998 8999999999
Q ss_pred EEEEECCCC-------------------eeEEEeccCCCcEEEEEEccCCCCCCCCCccEE-EEeecCceEEEEee
Q 010754 422 AKIWNMKQD-------------------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI-LARLIPYFLYWICS 477 (502)
Q Consensus 422 i~iwd~~~~-------------------~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~-las~~~~~~iw~~~ 477 (502)
|++||++++ +++..+.+|..+|++++|+|+|. .++ +++.|+.+++|...
T Consensus 284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-------GLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST-------TEEEEEETTSEEEEEEEC
T ss_pred EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC-------eEEEEecCCCcEEEEECC
Confidence 999998753 46778889999999999999998 666 67889999999754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=255.79 Aligned_cols=262 Identities=21% Similarity=0.355 Sum_probs=219.5
Q ss_pred cccccCCCCceeeeCC---------CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCcee
Q 010754 190 MDIATTSASESFEIPN---------SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNV 260 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~~---------~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~ 260 (502)
..+++.+.+..+.++. ...+.+++|...|.+++|+|++++|++|+.|+.|++|+.......
T Consensus 52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~---------- 121 (340)
T 4aow_A 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT---------- 121 (340)
T ss_dssp TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----------
T ss_pred CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeeccccee----------
Confidence 3455666666555532 235788999999999999999999999999999999998875421
Q ss_pred EEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceE--EEecCccCCeEEEEEecCC--CEEEEEecC
Q 010754 261 LVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK--CTLSKHKGPIFSLKWNKKG--DYLLTGSCD 336 (502)
Q Consensus 261 ~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~v~~l~~~~~~--~~l~s~~~d 336 (502)
.....+...+..+.+++++.+|++|+.|+.+++||...... .....|...+..++|++++ .++++++.|
T Consensus 122 -------~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 122 -------RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp -------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred -------eeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 11122346788999999999999999999999999875443 3456789999999998865 578899999
Q ss_pred CeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEE
Q 010754 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 337 ~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las 415 (502)
+.|++||+++++.+..+..|...|.+++|+++ ..|++++.|+.|++||+++.+++..+..+ ..|.++.|+|++.++ +
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~ 272 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-C 272 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-E
T ss_pred CEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-e
Confidence 99999999999999999999999999999875 46889999999999999999999888854 689999999988665 5
Q ss_pred EeCCCcEEEEECCCCeeEEEec---------cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 416 CSDDVTAKIWNMKQDKYVHDLR---------EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 416 ~s~dg~i~iwd~~~~~~~~~~~---------~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
++.|+.|+|||++++.++..+. +|...|++++|+|+|. .|++++.|+.+++|...
T Consensus 273 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-------~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-------TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-------EEEEEETTSCEEEEEEE
T ss_pred ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-------EEEEEeCCCEEEEEeCC
Confidence 5668999999999988776653 6888999999999998 78888999999999865
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=275.16 Aligned_cols=250 Identities=15% Similarity=0.283 Sum_probs=200.7
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCC------------CCeEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS------------KDVTTL 280 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~l 280 (502)
.|.+.|++++|+|+|++||+|+.||.|+||++.++........... .... ...+|. ..|+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~--~~~~----~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEY--NVYS----TFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCE--EEEE----EEECCCCEEEGGGTEEECCCCCEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccce--eEec----ccccccccccccccccccCceEEE
Confidence 3578999999999999999999999999999987653211111111 1111 122344 779999
Q ss_pred EECCCC--CEEEEEECCCeEEEEECCCceE-----------------------------------------EEecCccCC
Q 010754 281 DWNGEG--TLLATGSYDGQARIWSTNGDLK-----------------------------------------CTLSKHKGP 317 (502)
Q Consensus 281 ~~s~~g--~~l~s~~~dg~i~iwd~~~~~~-----------------------------------------~~~~~~~~~ 317 (502)
+|+|++ .+|++++.||.|++|++..... ....+|...
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 999998 7999999999999999764222 113679999
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEEcCC-CceEEE-------EeeccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCC
Q 010754 318 IFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQ-------FEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGE 387 (502)
Q Consensus 318 v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~-------~~~~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~ 387 (502)
|.+++|+|++++|++| .|+.|++||+++ +..+.. +..|...|.+++|+|+ ..+++++.|+.|++||+++
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Confidence 9999999999999998 799999999984 444442 3468889999999886 5799999999999999999
Q ss_pred Ccc----eEEEecCCC------------cEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEeccCCCc--------
Q 010754 388 NRP----IKTFAGHQG------------EVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKE-------- 442 (502)
Q Consensus 388 ~~~----~~~~~~h~~------------~i~~l~~sp~g~~las~s~dg~i~iwd~~~-~~~~~~~~~h~~~-------- 442 (502)
+.. +..+.+|.. .|++++|+|+|++|++++. |.|+|||+++ ++++..+.+|...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence 887 788988876 8999999999999999999 9999999997 8888888888642
Q ss_pred -------EEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 443 -------IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 443 -------i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+..++|+|+|. .+++++.|+.+++|+..
T Consensus 338 ~~~~i~~~~~~~~s~~~~-------~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDS-------VVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp HTSGGGCCCCEEECTTSS-------EEEEECSTTEEEEEETT
T ss_pred cccccccceEEEECCCCC-------EEEEeccCCEEEEEEcC
Confidence 33499999998 78888889999999753
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=268.46 Aligned_cols=241 Identities=14% Similarity=0.190 Sum_probs=200.6
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+.+| ..+....|+|++++|++|+.||.|++||+.++... .....|...|++++|+|++++|+
T Consensus 94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~~l~ 155 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-----------------EIDQAHVSEITKLKFFPSGEALI 155 (420)
T ss_dssp SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-----------------EETTSSSSCEEEEEECTTSSEEE
T ss_pred EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-----------------eecccccCccEEEEECCCCCEEE
Confidence 3445 44556688999999999999999999998865421 12245778999999999999999
Q ss_pred EEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec---cCCeEEE---
Q 010754 291 TGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH---SGPTLDV--- 363 (502)
Q Consensus 291 s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~v--- 363 (502)
+|+.||.|++||+. +.....+.+|...|.+++|+|++++|++++.|++|++||+++++.+..+..+ ...+.++
T Consensus 156 s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235 (420)
T ss_dssp EEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred EEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence 99999999999986 5667788899999999999999999999999999999999999999888753 3344444
Q ss_pred ------------------EecCCC-EEEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCCCC-EEEEEeCCCcE
Q 010754 364 ------------------DWRNNV-SFATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGS-LLASCSDDVTA 422 (502)
Q Consensus 364 ------------------~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~g~-~las~s~dg~i 422 (502)
+|++++ .+++++.||.|++||+++++.+..+. +|...|++++|+|++. +|++|+.||.|
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 445554 58899999999999999998777765 4788999999999999 99999999999
Q ss_pred EEEECCCCee-EEEecc-CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 423 KIWNMKQDKY-VHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 423 ~iwd~~~~~~-~~~~~~-h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
++||+++++. +..+.. |..+|.++.| |++. .+++++.|+.+++|...
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-------~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTPINNVYF-AAGA-------LFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSCEEEEEE-ETTE-------EEEEETTTEEEEEEEEC
T ss_pred EEEEcCCCcCchhhhhccCCCCceEEEe-CCCC-------EEEEecCCccEEEEecc
Confidence 9999998754 667776 6778888855 4655 67788888999999754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=270.71 Aligned_cols=251 Identities=14% Similarity=0.179 Sum_probs=196.9
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
..+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.... .......|...|++++|+|+
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~ 111 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK--------------QTLVLLRLNRAATFVRWSPN 111 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCC--------------CEEECCCCSSCEEEEECCTT
T ss_pred EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee--------------eeeEecccCCceEEEEECCC
Confidence 3567788999999999999999999999999999999998765100 11122346788999999999
Q ss_pred CCEEEEEECCCeEEEEECCCce----EEEecC-ccCCeEEEEEecCCCEEEEEecCCeEEEEEcC---------------
Q 010754 286 GTLLATGSYDGQARIWSTNGDL----KCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK--------------- 345 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~--------------- 345 (502)
+++|++|+.||.|++||++... ...+.. |...|.+++|+|++++|++++.|+.|++||+.
T Consensus 112 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 191 (377)
T 3dwl_C 112 EDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGS 191 (377)
T ss_dssp SSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCS
T ss_pred CCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccc
Confidence 9999999999999999987543 566777 99999999999999999999999999999985
Q ss_pred ---CCceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcc----eEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 346 ---TEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRP----IKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 346 ---~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~----~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
.++++..+ .|...|.+++|++++ .+++++.|+.|++||+.++.. +..+.+|...|++++|+|++++|++|+
T Consensus 192 ~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 270 (377)
T 3dwl_C 192 RLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY 270 (377)
T ss_dssp CCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEES
T ss_pred ccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEc
Confidence 34455666 789999999998865 588999999999999999987 888999999999999999999999998
Q ss_pred CCCcEEEEECCCCe--e-------------------------E---------EEe----------------ccCCCcEEE
Q 010754 418 DDVTAKIWNMKQDK--Y-------------------------V---------HDL----------------REHSKEIYT 445 (502)
Q Consensus 418 ~dg~i~iwd~~~~~--~-------------------------~---------~~~----------------~~h~~~i~~ 445 (502)
.++.+ +|+..... . . ..+ ..|...|++
T Consensus 271 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~ 349 (377)
T 3dwl_C 271 NYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIAT 349 (377)
T ss_dssp SSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEE
T ss_pred CCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEE
Confidence 77766 66654211 0 0 001 139999999
Q ss_pred EEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 446 IRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+++.+.+.. ....+++++.|+.+++|.
T Consensus 350 ~~~~~~~~~---~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 350 LRPYAGTPG---NITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp EEEEEEETT---EEEEEEEEETTSEEEEEC
T ss_pred EeccCCCCC---ceEEEEeecCCCcEEEec
Confidence 998876541 112488899999999996
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=263.84 Aligned_cols=247 Identities=19% Similarity=0.326 Sum_probs=204.2
Q ss_pred eEEeccCCCceEEEEEcCCCC-eEEEEeC---CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 208 VTILEGHTSEVCACAWSPAGS-LLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~-~l~sgs~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
...+++|.+.|++++|+|++. ++++|+. |+.|++|++.+++.. .. ....|...|++++|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~-----------~~-----~~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK-----------LL-----REIEKAKPIKCGTFG 74 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE-----------EE-----EEEEESSCEEEEECT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc-----------ce-----eeecccCcEEEEEEc
Confidence 456688999999999999986 5556665 999999999876521 00 111356789999999
Q ss_pred CC---CCEEEEEECCCeEEEEECCC-c-eEEEecCccCCeEEEEE------ecCCCEEEEEecCCeEEEEEcCCCc-eEE
Q 010754 284 GE---GTLLATGSYDGQARIWSTNG-D-LKCTLSKHKGPIFSLKW------NKKGDYLLTGSCDKTAIVWDVKTEE-WKQ 351 (502)
Q Consensus 284 ~~---g~~l~s~~~dg~i~iwd~~~-~-~~~~~~~~~~~v~~l~~------~~~~~~l~s~~~d~~i~~wd~~~~~-~~~ 351 (502)
|+ +++|++|+.||.|++||+.. . ....+..|...|.+++| +|++++|++++.||.|++||++++. .+.
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 98 79999999999999999874 3 67788899999999955 6789999999999999999999887 677
Q ss_pred EEeeccC----CeEEEE----ecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcC---CCCEEEEEeCC
Q 010754 352 QFEFHSG----PTLDVD----WRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP---TGSLLASCSDD 419 (502)
Q Consensus 352 ~~~~~~~----~v~~v~----~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp---~g~~las~s~d 419 (502)
.+..+.+ .+.++. |++ +..+++++.|+.|++||+++++.... ..|...|++++|+| ++.+|++|+.|
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~d 233 (357)
T 3i2n_A 155 NMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE 233 (357)
T ss_dssp EECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEEST
T ss_pred eccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCC
Confidence 7766555 788888 444 55688999999999999999887544 56889999999999 99999999999
Q ss_pred CcEEEEECCCCeeEEEec-----cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 420 VTAKIWNMKQDKYVHDLR-----EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 420 g~i~iwd~~~~~~~~~~~-----~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|.|++||+++++++..+. +|...|++++|+|+|. ..+++++.++.+++|...
T Consensus 234 g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 234 GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR------ELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE------EEEEEEETTSEEEEEEEE
T ss_pred CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC------cEEEEEeCCCcEEEeecC
Confidence 999999998877655554 8999999999999975 246777888999999865
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-33 Score=275.94 Aligned_cols=257 Identities=18% Similarity=0.273 Sum_probs=212.6
Q ss_pred CceEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 206 SDVTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
..+..+.+|.+.|.+++|+|+ +.+|++|+.|+.|++||+.+......... .........|...|++++|+|
T Consensus 104 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~ 175 (416)
T 2pm9_A 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT--------PLTPGQSMSSVDEVISLAWNQ 175 (416)
T ss_dssp CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCC--------CBCCCCSCCSSCCCCEEEECS
T ss_pred cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccc--------ccccccccCCCCCeeEEEeCC
Confidence 367788999999999999998 89999999999999999987652110000 001122345678899999999
Q ss_pred C-CCEEEEEECCCeEEEEECCC-ceEEEecCc------cCCeEEEEEecCC-CEEEEEecCC---eEEEEEcCCC-ceEE
Q 010754 285 E-GTLLATGSYDGQARIWSTNG-DLKCTLSKH------KGPIFSLKWNKKG-DYLLTGSCDK---TAIVWDVKTE-EWKQ 351 (502)
Q Consensus 285 ~-g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~------~~~v~~l~~~~~~-~~l~s~~~d~---~i~~wd~~~~-~~~~ 351 (502)
+ +.+|++++.||.|++||++. .....+..+ ...|.+++|+|++ .+|++++.|+ .|++||++++ ..+.
T Consensus 176 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~ 255 (416)
T 2pm9_A 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ 255 (416)
T ss_dssp SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB
T ss_pred CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE
Confidence 8 78999999999999999874 555566655 7899999999997 6899999998 9999999986 5677
Q ss_pred EEe-eccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 010754 352 QFE-FHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCSDDVTAKIWNM 427 (502)
Q Consensus 352 ~~~-~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g-~~las~s~dg~i~iwd~ 427 (502)
.+. .|...+.+++|++ +..+++++.|+.|++||+.+++++..+.+|...|++++|+|++ .+|++++.||.|+|||+
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 777 8999999999986 4669999999999999999999999999999999999999999 89999999999999999
Q ss_pred CCCeeEEEec-----------------------------------cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceE
Q 010754 428 KQDKYVHDLR-----------------------------------EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 428 ~~~~~~~~~~-----------------------------------~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
.+........ .|..++.+++|+|+|. .+++++.|+.++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~la~~~~d~~v~ 408 (416)
T 2pm9_A 336 QNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-------LVQITPDGKGVS 408 (416)
T ss_dssp CCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-------EECBCTTSSCBC
T ss_pred cCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-------EEEEeCCCCeEE
Confidence 8765432221 1667888999999998 555666678899
Q ss_pred EEEee
Q 010754 473 YWICS 477 (502)
Q Consensus 473 iw~~~ 477 (502)
+|...
T Consensus 409 ~w~~~ 413 (416)
T 2pm9_A 409 ITNPK 413 (416)
T ss_dssp CBCCC
T ss_pred EEEec
Confidence 98754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=266.26 Aligned_cols=240 Identities=22% Similarity=0.325 Sum_probs=209.5
Q ss_pred ceEEeccCCCce-EEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEV-CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V-~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
....+.+|.+.| .++.+ ++++|++|+.||+|++||+.+++.. ....+|...|++++|+++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~-----------------~~~~~h~~~V~~l~~~~~ 173 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL-----------------LQLSGHDGGVWALKYAHG 173 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEE-----------------EEECCCSSCEEEEEECST
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE-----------------EEEeCCCcCEEEEEEcCC
Confidence 356889999886 55555 5789999999999999999876521 122357889999999998
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEe--cCCCEEEEEecCCeEEEEEcCCCce-------------
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWN--KKGDYLLTGSCDKTAIVWDVKTEEW------------- 349 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~--~~~~~l~s~~~d~~i~~wd~~~~~~------------- 349 (502)
+ +|++|+.||.|++||++ +.....+.+|...|.+++|+ +++++|++++.|++|++||++++..
T Consensus 174 ~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 174 G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 8 99999999999999987 56677888999999999999 5778999999999999999987653
Q ss_pred ----------EEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 350 ----------KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 350 ----------~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
...+.+|...+.++... +..+++++.|+.|++||+.+++++..+.+|...|.+++|+|++++|++|+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred eeccCCCeEEEEEccCccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 45567788888888543 5679999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|.|++||+++++++..+.+|...|.+++|++ . .+++++.|+.+++|+.
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-------~l~s~s~dg~v~vwd~ 379 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHTALVGLLRLSD--K-------FLVSAAADGSIRGWDA 379 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECS--S-------EEEEEETTSEEEEEET
T ss_pred CcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--C-------EEEEEeCCCcEEEEEC
Confidence 9999999999999999999999999999984 3 6888999999999974
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-32 Score=268.27 Aligned_cols=253 Identities=10% Similarity=0.110 Sum_probs=195.4
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeee----------------cCccccCCCCe
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV----------------KGRTNEKSKDV 277 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~v 277 (502)
-...|.+++|+|||+++||++.|++|+ |....+.+ ..++..+...... ......+...|
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V 88 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYP 88 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCE
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcE
Confidence 346677888888888888888888887 54444322 2222222222100 01111346789
Q ss_pred EEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccC-----CeEEEEEecCCCEEEEEecCCeEEEEEcCCCce---
Q 010754 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKG-----PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW--- 349 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~--- 349 (502)
++++|||+|++||+++.||.|++|+.++ ....+. |.. .|.+++|+|+|++|++|+.||+|++||+.++..
T Consensus 89 ~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~ 166 (588)
T 2j04_A 89 RVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTP 166 (588)
T ss_dssp EEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccc
Confidence 9999999999999999999999999665 555556 665 499999999999999999999999999998863
Q ss_pred ----EEEE----eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcc---eEEE-ecCCCcEEEEEEcCCCCEEEEEe
Q 010754 350 ----KQQF----EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP---IKTF-AGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 350 ----~~~~----~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~-~~h~~~i~~l~~sp~g~~las~s 417 (502)
+..+ .+|...|.+++|+|++ +++++.|+.|++||+..+.. ..++ .+|...|.+++|+ |++||+++
T Consensus 167 ~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~ 243 (588)
T 2j04_A 167 EFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC 243 (588)
T ss_dssp CCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC
T ss_pred cceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe
Confidence 5666 4566799999999999 99999999999999988773 3567 4788999999999 68999998
Q ss_pred CCCcEEEEECCCCeeEEEeccCCCcEEEEEE--ccCCCCCCCCCccEEEEeecCceEEEEee-eEEEeeec
Q 010754 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRW--SPTGSGTNNPNQQLILARLIPYFLYWICS-IYFKYFGT 485 (502)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~--sp~g~~~~~~~~~l~las~~~~~~iw~~~-~~~~~~g~ 485 (502)
+++|++||+.+++......+|...|++++| +|+|. .+++|..++. ++|..+ +.+.+++.
T Consensus 244 -~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~-------~La~a~edG~-klw~~d~~~~spd~~ 305 (588)
T 2j04_A 244 -PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST-------ILLMSNKTSY-KVLLEDELHVTADNI 305 (588)
T ss_dssp -SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE-------EEEECSSCEE-EEEESSSEEEECCCS
T ss_pred -CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC-------EEEEEcCCCC-EEEeeccEEECCCce
Confidence 699999999988884444489999999999 99997 5666666777 899753 34555553
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-31 Score=299.06 Aligned_cols=246 Identities=20% Similarity=0.338 Sum_probs=219.9
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|.+.|++++|+|++++|++|+.||+|++||+.++... ....+|...|++++|+|+|
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~-----------------~~~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL-----------------LDIKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE-----------------EEECCCSSCEEEEEECTTS
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE-----------------EEeccCCCCEEEEEEecCC
Confidence 34578899999999999999999999999999999999887532 1123567899999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec--CCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
++|++|+.||.|++||+. +.....+..|...|.+++|+| ++.++++|+.|+.|++||+.+++++..+.+|...|.++
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~ 749 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEE
Confidence 999999999999999976 567788889999999999999 55689999999999999999999999999999999999
Q ss_pred EecCCC-EEEEEeCCCeEEEEEcCCCcceEEE------------------------------------------------
Q 010754 364 DWRNNV-SFATSSTDNMIYVCKIGENRPIKTF------------------------------------------------ 394 (502)
Q Consensus 364 ~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~------------------------------------------------ 394 (502)
+|++++ .+++++.||.|++||+.++.....+
T Consensus 750 ~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp EECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred EEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 998754 6899999999999999776443322
Q ss_pred -------ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee
Q 010754 395 -------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL 467 (502)
Q Consensus 395 -------~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~ 467 (502)
.+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...|++++|+|+|. .+++++.
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-------~l~s~s~ 902 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGS-------SFLTASD 902 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-------EEEEEET
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCC-------EEEEEeC
Confidence 16778899999999999999999999999999999999999999999999999999998 7888999
Q ss_pred cCceEEEEe
Q 010754 468 IPYFLYWIC 476 (502)
Q Consensus 468 ~~~~~iw~~ 476 (502)
|+.+++|..
T Consensus 903 dg~v~vw~~ 911 (1249)
T 3sfz_A 903 DQTIRVWET 911 (1249)
T ss_dssp TSCEEEEEH
T ss_pred CCeEEEEEc
Confidence 999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=255.93 Aligned_cols=199 Identities=20% Similarity=0.365 Sum_probs=186.0
Q ss_pred ccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC--
Q 010754 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-- 347 (502)
Q Consensus 271 ~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-- 347 (502)
.+|...|++++|+|++++|++|+.||.|++||.. +.....+..|...|.+++|+|++++|++|+.|+.|++||+.++
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 4567889999999999999999999999999965 5667788889999999999999999999999999999999875
Q ss_pred --ceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010754 348 --EWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 348 --~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iw 425 (502)
.....+.+|...+.++.|.+++.+++++.|+.|++||+.+++++..+.+|.+.|++++|+|++++|++|+.||.|++|
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w 211 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 356677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 426 NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 426 d~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+++++++..+.+|...|++++|+|+|. .+++++.|+.+++|+.
T Consensus 212 d~~~~~~~~~~~~h~~~v~~v~~~p~~~-------~l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 212 DVREGMCRQTFTGHESDINAICFFPNGN-------AFATGSDDATCRLFDL 255 (340)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEECTTSS-------EEEEEETTSCEEEEET
T ss_pred ECCCCeeEEEEcCCcCCEEEEEEcCCCC-------EEEEEcCCCcEEEEEC
Confidence 9999999999999999999999999998 7888999999999975
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=265.49 Aligned_cols=248 Identities=19% Similarity=0.297 Sum_probs=208.3
Q ss_pred EEeccCCCceEEEEEcCC----CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 209 TILEGHTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~----~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
....+|.+.|++++|+|+ ...+++++.++.|++|++.++.... .+... ....+...|++++|+|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~----------~~~~~--~~~~~~~~v~~~~~~~ 79 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR----------LLQSY--VDADADENFYTCAWTY 79 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE----------EEEEE--ECSCTTCCEEEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE----------eeeec--cccCCCCcEEEEEecc
Confidence 455699999999999984 4566666677899999998765321 11111 1123567899999999
Q ss_pred C----CCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEE---ee
Q 010754 285 E----GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQF---EF 355 (502)
Q Consensus 285 ~----g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~ 355 (502)
+ +++|++|+.||.|++||+. +.....+..|...|.+++|+| ++++|++++.||.|++||+++++.+..+ ..
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 159 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc
Confidence 8 6799999999999999976 566778888999999999999 8999999999999999999999998888 67
Q ss_pred ccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEe----------------------------cCCCcEEEEEE
Q 010754 356 HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA----------------------------GHQGEVNCVKW 406 (502)
Q Consensus 356 ~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~----------------------------~h~~~i~~l~~ 406 (502)
|...|.+++|+++ ..+++++.|+.|++||+++++.+..+. +|...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 9999999999875 468899999999999999876544333 39999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCee--------------EEEeccCCCcEEEEEEccC--CCCCCCCCccEEEEeecCc
Q 010754 407 DPTGSLLASCSDDVTAKIWNMKQDKY--------------VHDLREHSKEIYTIRWSPT--GSGTNNPNQQLILARLIPY 470 (502)
Q Consensus 407 sp~g~~las~s~dg~i~iwd~~~~~~--------------~~~~~~h~~~i~~v~~sp~--g~~~~~~~~~l~las~~~~ 470 (502)
+ +++|++++.||.|++||+.++.. +..+..|...|++++|+|+ |. .+++++.++.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-------~l~~~~~dg~ 310 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-------MLALGNQVGK 310 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-------EEEEECTTSC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-------EEEEEecCCc
Confidence 9 77999999999999999987643 7788899999999999999 77 7778888899
Q ss_pred eEEEEee
Q 010754 471 FLYWICS 477 (502)
Q Consensus 471 ~~iw~~~ 477 (502)
+++|...
T Consensus 311 i~vwd~~ 317 (366)
T 3k26_A 311 LYVWDLE 317 (366)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=265.41 Aligned_cols=248 Identities=18% Similarity=0.261 Sum_probs=202.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|.+.|++++|+|++++|++|+.|++|++||+.+++... ....|...|++++|+|++
T Consensus 131 ~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-----------------~~~~h~~~v~~~~~~~~~ 193 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR-----------------TLIGHRATVTDIAIIDRG 193 (420)
T ss_dssp EEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE-----------------EEECCSSCEEEEEEETTT
T ss_pred eeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce-----------------EEcCCCCcEEEEEEcCCC
Confidence 345668999999999999999999999999999999998765321 123467889999999999
Q ss_pred CEEEEEECCCeEEEEECCC-ceEEEecC---cc---------------------CCeEEEEEecCCCEEEEEecCCeEEE
Q 010754 287 TLLATGSYDGQARIWSTNG-DLKCTLSK---HK---------------------GPIFSLKWNKKGDYLLTGSCDKTAIV 341 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~---~~---------------------~~v~~l~~~~~~~~l~s~~~d~~i~~ 341 (502)
++|++|+.||.|++||+.. .....+.. +. ..+.+++|+|++++|++++.||.|++
T Consensus 194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 273 (420)
T 3vl1_A 194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV 273 (420)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEE
T ss_pred CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEE
Confidence 9999999999999999874 45555553 33 44455556789999999999999999
Q ss_pred EEcCCCceEEEEee-ccCCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCc-ceEEEec-CCCcEEEEEEcCCCCEEEEE
Q 010754 342 WDVKTEEWKQQFEF-HSGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTFAG-HQGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 342 wd~~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~-~~~~~~~-h~~~i~~l~~sp~g~~las~ 416 (502)
||+++++....+.. |...+.+++|++++ .+++++.||.|++||++++. ++..+.+ |...|+++.+ +++++|+++
T Consensus 274 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~ 352 (420)
T 3vl1_A 274 HNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSS 352 (420)
T ss_dssp EETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEE
T ss_pred EECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEe
Confidence 99999988777754 77899999998865 69999999999999999875 4777877 5677888855 578899999
Q ss_pred eCCCcEEEEECCCC---------eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 417 SDDVTAKIWNMKQD---------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 417 s~dg~i~iwd~~~~---------~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.||.|++|++... .....+..|...|.+++|+|+|+ .+..++.++.++.+.+|..
T Consensus 353 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 353 GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE----SNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS----SSCEEEEEETTTEEEEEES
T ss_pred cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC----CcceEEEEcCCceEEEEec
Confidence 99999999998763 22234557888999999999986 2335777777888888864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=251.69 Aligned_cols=227 Identities=21% Similarity=0.357 Sum_probs=184.8
Q ss_pred CCCcccccCCCCceeeeC------CCceEEeccCCCceEEEEEcCC--CCeEEEEeCCCcEEEEecCCCCccCCCCCCCc
Q 010754 187 PEPMDIATTSASESFEIP------NSDVTILEGHTSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPL 258 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~------~~~~~~l~~H~~~V~~~~~~p~--~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~ 258 (502)
|....+++.+.+..+.+. ...+..|.+|.+.|++++|+|+ +++|++|+.|++|+|||+.++....
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~------- 91 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ------- 91 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC-------
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE-------
Confidence 333345555555555443 1356889999999999999874 8999999999999999998753210
Q ss_pred eeEEEeeecCccccCCCCeEEEEECCC--CCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecC-------
Q 010754 259 NVLVLKHVKGRTNEKSKDVTTLDWNGE--GTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKK------- 326 (502)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~------- 326 (502)
......|...|.+++|+|+ |.+|++|+.||.|++||++.. ....+..|...|.+++|+|+
T Consensus 92 --------~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 92 --------IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp --------CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred --------EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 0112346778999999997 899999999999999998643 24567789999999999997
Q ss_pred ------CCEEEEEecCCeEEEEEcCCCc----eEEEEeeccCCeEEEEecCC----CEEEEEeCCCeEEEEEcCCCcc--
Q 010754 327 ------GDYLLTGSCDKTAIVWDVKTEE----WKQQFEFHSGPTLDVDWRNN----VSFATSSTDNMIYVCKIGENRP-- 390 (502)
Q Consensus 327 ------~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~v~~~~~----~~~~~~~~d~~i~i~d~~~~~~-- 390 (502)
+++|++|+.|++|++||++++. ....+.+|...|.+++|+|+ ..|++++.|++|++||+.....
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~ 243 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc
Confidence 5799999999999999998876 56678889999999999986 5699999999999999987531
Q ss_pred -eEEE--ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 391 -IKTF--AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 391 -~~~~--~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
...+ .+|...|.+++|+|+|++||+++.||.|+||+..
T Consensus 244 ~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 244 KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 2233 4678899999999999999999999999999976
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-31 Score=255.71 Aligned_cols=203 Identities=22% Similarity=0.387 Sum_probs=179.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-- 284 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-- 284 (502)
....+.+|.+.|.+++|+|++..|++|+.|++|++||+.+++.. ....+|...|.+++|+|
T Consensus 146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-----------------QSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----------------EEEECCSSCEEEEEECCCS
T ss_pred cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-----------------EEEcCCCCCeEEEEEEeCC
Confidence 45677899999999999999999999999999999999887532 11235677899999987
Q ss_pred CCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc--CCeE
Q 010754 285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS--GPTL 361 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~ 361 (502)
+|++|++|+.||.|++||++ +.....+..|...|.+++|+|++++|++|+.|++|++||++++..+..+..+. ..+.
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccccee
Confidence 57899999999999999976 56677888999999999999999999999999999999999988777665433 4688
Q ss_pred EEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 362 DVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 362 ~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
+++|++++ .+++++.|+.|++||+.++..+..+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus 289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99998754 578899999999999999999999999999999999999999999999999999996
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=269.21 Aligned_cols=252 Identities=11% Similarity=0.120 Sum_probs=204.2
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecC---CCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE--ECCCCC
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIA---DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD--WNGEGT 287 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~--~s~~g~ 287 (502)
+|.+.|.+++|+|++.+|++|+.||+|++||+. +++....... .....+......+...+.++. +++++.
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC-----ECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE-----EEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc-----ceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 699999999999999999999999999999995 3332111000 011111111111566788888 678999
Q ss_pred EEEEEECCCeEEEEECC-CceEEEecC--ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe-eccCCeEEE
Q 010754 288 LLATGSYDGQARIWSTN-GDLKCTLSK--HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-FHSGPTLDV 363 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~-~~~~~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~v 363 (502)
+|++|+.||.|++||+. +.....+.. |...|.+++|+|++++|++|+.||.|++||+++++++..+. .|..+|.++
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 263 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHV 263 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred EEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence 99999999999999986 456667776 89999999999999999999999999999999999998886 677789999
Q ss_pred EecC----CC-EEEEEeCCCeEEEEEcCCCcceEEEecC--------------------------CCcEEEEEEcCCCCE
Q 010754 364 DWRN----NV-SFATSSTDNMIYVCKIGENRPIKTFAGH--------------------------QGEVNCVKWDPTGSL 412 (502)
Q Consensus 364 ~~~~----~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h--------------------------~~~i~~l~~sp~g~~ 412 (502)
.|.+ ++ .+++++.|+.|++||+.+++.+..+.+| ...|++++|+ ++++
T Consensus 264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence 6654 34 6888999999999999999988877754 4458888999 7789
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEecc-------------------------------------CCCcEEEEEEccCCCCC
Q 010754 413 LASCSDDVTAKIWNMKQDKYVHDLRE-------------------------------------HSKEIYTIRWSPTGSGT 455 (502)
Q Consensus 413 las~s~dg~i~iwd~~~~~~~~~~~~-------------------------------------h~~~i~~v~~sp~g~~~ 455 (502)
|++|+.||.|++||+.+++++..+.+ |...|++++|++++.
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~-- 420 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE-- 420 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS--
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC--
Confidence 99999999999999999887776665 888999999999822
Q ss_pred CCCCccEEEEeecCceEEEE
Q 010754 456 NNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 456 ~~~~~~l~las~~~~~~iw~ 475 (502)
...+++|+.|+.+++|.
T Consensus 421 ---~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 421 ---TPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---SEEEEEEETTSCEEEEC
T ss_pred ---ceEEEEEcCCceEEEeC
Confidence 23778888889999993
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-31 Score=265.55 Aligned_cols=257 Identities=15% Similarity=0.265 Sum_probs=198.0
Q ss_pred eEEeccCC------------CceEEEEEcCCC--CeEEEEeCCCcEEEEecCCCCccCC---C-----------CCCCce
Q 010754 208 VTILEGHT------------SEVCACAWSPAG--SLLASGSGDSTARIWTIADGTSNGG---A-----------QNGPLN 259 (502)
Q Consensus 208 ~~~l~~H~------------~~V~~~~~~p~~--~~l~sgs~dg~v~iw~~~~~~~~~~---~-----------~~~~~~ 259 (502)
...+.+|. +.|.+++|+|++ .+|++++.|++|++|++.++..... . ......
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence 67889998 889999999998 7999999999999999876432100 0 000000
Q ss_pred eEE---------EeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-Cce-EE-------EecCccCCeEEE
Q 010754 260 VLV---------LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDL-KC-------TLSKHKGPIFSL 321 (502)
Q Consensus 260 ~~~---------~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~-~~-------~~~~~~~~v~~l 321 (502)
... .........+|...|++++|+|++++|++| .||.|++||+. +.. .. .+..|...|.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 232 (447)
T 3dw8_B 154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA 232 (447)
T ss_dssp CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE
T ss_pred eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEE
Confidence 000 000111234688899999999999999998 79999999988 332 22 255899999999
Q ss_pred EEecCC-CEEEEEecCCeEEEEEcCCCce----EEEEeeccC------------CeEEEEecCCCE-EEEEeCCCeEEEE
Q 010754 322 KWNKKG-DYLLTGSCDKTAIVWDVKTEEW----KQQFEFHSG------------PTLDVDWRNNVS-FATSSTDNMIYVC 383 (502)
Q Consensus 322 ~~~~~~-~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~------------~v~~v~~~~~~~-~~~~~~d~~i~i~ 383 (502)
+|+|++ ++|++|+.||.|++||+++++. ...+..|.. .|.+++|++++. +++++. +.|++|
T Consensus 233 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iw 311 (447)
T 3dw8_B 233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVW 311 (447)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEE
T ss_pred EECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEE
Confidence 999998 9999999999999999999887 788888776 899999988765 666666 999999
Q ss_pred EcCC-CcceEEEecCCCc---------------EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec----------
Q 010754 384 KIGE-NRPIKTFAGHQGE---------------VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---------- 437 (502)
Q Consensus 384 d~~~-~~~~~~~~~h~~~---------------i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~---------- 437 (502)
|++. ++++..+.+|... +..++|+|++++|++|+.||.|+|||+.+++.+. +.
T Consensus 312 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~ 390 (447)
T 3dw8_B 312 DLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRT 390 (447)
T ss_dssp ETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTC
T ss_pred eCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeeccccccccc
Confidence 9997 8889999988642 3349999999999999999999999999988753 22
Q ss_pred -----------------------cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 438 -----------------------EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 438 -----------------------~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.+...|..++|+|+|. .|.++ +.+.+.+|.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-------~la~~-~~~~~~~~~ 443 (447)
T 3dw8_B 391 VLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN-------IIAVA-TTNNLYIFQ 443 (447)
T ss_dssp BCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-------EEEEE-CSSCEEEEE
T ss_pred ccCCccccccCCcccccccccccccCCceeEEEECCCCC-------EEEEE-ecceeeeec
Confidence 2345789999999998 33333 344566664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-31 Score=282.90 Aligned_cols=266 Identities=21% Similarity=0.251 Sum_probs=226.9
Q ss_pred CCCcccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 187 PEPMDIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
|....++....+..+.+. ...+..+.+|.+.|.+++|+|++++|++|+.||.|++|++.+++...
T Consensus 23 p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~----------- 91 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV----------- 91 (814)
T ss_dssp SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE-----------
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-----------
Confidence 333344444444444332 23567888999999999999999999999999999999998865321
Q ss_pred EeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEEEEec-CCCEEEEEecCCeE
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTA 339 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i 339 (502)
....|...|++++|+|++++|++|+.||.|++|++.. .....+..|...|.+++|+| +++.|++++.||+|
T Consensus 92 ------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 92 ------DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp ------EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred ------EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 1234677899999999999999999999999999764 45677888999999999999 88999999999999
Q ss_pred EEEEcCCCceEEEEeecc-CCeEEEEecC---CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEE
Q 010754 340 IVWDVKTEEWKQQFEFHS-GPTLDVDWRN---NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 340 ~~wd~~~~~~~~~~~~~~-~~v~~v~~~~---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las 415 (502)
++||+.++.....+..+. ..+..++|++ +..+++++.||.|++||+.+++.+..+.+|...|++++|+|++++|++
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 999999888877777655 7899999976 457899999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 416 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
|+.||.|++||+.+++.+..+..|...|++++|+|+|. ..++.++.++.+.+|.
T Consensus 246 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR------KNYIASGFDNGFTVLS 299 (814)
T ss_dssp EETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCG------GGEEEEEETTEEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCC------ceEEEEEeCCCEEEEE
Confidence 99999999999999999999999999999999999986 2246666777777775
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-31 Score=262.26 Aligned_cols=238 Identities=23% Similarity=0.419 Sum_probs=208.4
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
..+..+.+|.+.|.+++| ++++|++|+.||+|++||+.+++.. .....|...|.+++|++
T Consensus 164 ~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~l~~~~- 223 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEML-----------------NTLIHHCEAVLHLRFNN- 223 (435)
T ss_dssp CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEE-----------------EEECCCCSCEEEEECCT-
T ss_pred eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEE-----------------EEEcCCCCcEEEEEEcC-
Confidence 456788999999999999 7889999999999999999887532 11234677899999974
Q ss_pred CCEEEEEECCCeEEEEECCCc----eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 286 GTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
.++++|+.||.|++||+... ....+.+|...|.+++| ++++|++|+.||.|++||+++++.+..+..|...+.
T Consensus 224 -~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 300 (435)
T 1p22_A 224 -GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300 (435)
T ss_dssp -TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred -CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEE
Confidence 59999999999999998642 22677889999999999 678999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------e
Q 010754 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK---------Y 432 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~---------~ 432 (502)
++.|. +..+++++.||.|++||+++++++..+.+|...|.+++| ++.+|++|+.||.|++||+.++. +
T Consensus 301 ~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 301 CLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp EEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred EEEeC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 99995 568999999999999999999999999999999999999 68899999999999999997766 8
Q ss_pred EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
+..+.+|.++|++++| ++. .+++++.|+.+++|...-
T Consensus 378 ~~~~~~h~~~v~~l~~--~~~-------~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQF--DEF-------QIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEECCCSSCCCCEEE--CSS-------CEEECCSSSEEEEEC---
T ss_pred eeeccCCCCCeEEEEe--CCC-------EEEEEeCCCEEEEEECCC
Confidence 8899999999999999 555 678888899999998643
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-30 Score=243.68 Aligned_cols=239 Identities=22% Similarity=0.381 Sum_probs=202.0
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+.+|...|++++|+|++++|++|+.||+|++|++.+++... ...+|...+.++. +++..++
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-----------------~~~~h~~~~~~~~--~~~~~l~ 123 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-----------------NMTSHSARVGSLS--WNSYILS 123 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-----------------EEECCSSCEEEEE--EETTEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-----------------EecCccceEEEee--cCCCEEE
Confidence 35788899999999999999999999999999999876321 1223455666655 4567999
Q ss_pred EEECCCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce----EEEEeeccCCeEEEE
Q 010754 291 TGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW----KQQFEFHSGPTLDVD 364 (502)
Q Consensus 291 s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~v~ 364 (502)
+|+.++.+++|+... .....+.+|...+..+.|++++++|++++.|++|++||+++++. ......+.+.+..+.
T Consensus 124 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 203 (318)
T 4ggc_A 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203 (318)
T ss_dssp EEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEE
T ss_pred EEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEE
Confidence 999999999999663 55667889999999999999999999999999999999987653 445566778899999
Q ss_pred ecCCC--E--EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEecc
Q 010754 365 WRNNV--S--FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 365 ~~~~~--~--~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s--~dg~i~iwd~~~~~~~~~~~~ 438 (502)
+.+.. . +++++.++.|++||........... +...+..+.|+|++..+++++ .||.|+|||+.+++++..+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g 282 (318)
T 4ggc_A 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG 282 (318)
T ss_dssp ECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC
T ss_pred ecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC
Confidence 97643 2 3456788999999999888766655 777899999999999887765 799999999999999999999
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|.++|++++|+|+|. .|++++.|+.+++|+.
T Consensus 283 H~~~V~~l~~spdg~-------~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 283 HTSRVLSLTMSPDGA-------TVASAAADETLRLWRC 313 (318)
T ss_dssp CSSCEEEEEECTTSS-------CEEEEETTTEEEEECC
T ss_pred CCCCEEEEEEcCCCC-------EEEEEecCCeEEEEEC
Confidence 999999999999998 7889999999999975
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-30 Score=258.47 Aligned_cols=254 Identities=20% Similarity=0.314 Sum_probs=214.3
Q ss_pred cccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeec
Q 010754 192 IATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267 (502)
Q Consensus 192 ~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (502)
+++.+.+..+.+. ...+..+.+|.+.|.+++|+|++ +|++|+.||+|++||+.+++..
T Consensus 135 l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~----------------- 196 (464)
T 3v7d_B 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT----------------- 196 (464)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE-----------------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE-----------------
Confidence 3444444444443 23567889999999999999988 9999999999999999876521
Q ss_pred CccccCCCCeEEEEEC--CCCCEEEEEECCCeEEEEECCCce------------------------EEEecCccCCeEEE
Q 010754 268 GRTNEKSKDVTTLDWN--GEGTLLATGSYDGQARIWSTNGDL------------------------KCTLSKHKGPIFSL 321 (502)
Q Consensus 268 ~~~~~~~~~v~~l~~s--~~g~~l~s~~~dg~i~iwd~~~~~------------------------~~~~~~~~~~v~~l 321 (502)
....+|...|.+++|+ +++.++++|+.||.|++||+.... ...+.+|...|.++
T Consensus 197 ~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 276 (464)
T 3v7d_B 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276 (464)
T ss_dssp EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence 1223567889999998 578999999999999999976432 55677888888887
Q ss_pred EEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCc
Q 010754 322 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGE 400 (502)
Q Consensus 322 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~ 400 (502)
+++++++++++.||.|++||+++++.+..+..|...+.++.|+++ ..+++++.|+.|++||+.+++++..+.+|...
T Consensus 277 --~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~ 354 (464)
T 3v7d_B 277 --SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 354 (464)
T ss_dssp --EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred --cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc
Confidence 567899999999999999999999999999999999999999775 57899999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|.+++|+ +.+|++|+.||.|++||+.++.....+. |...+..++|+|++. .+++ +.++.+++|+.
T Consensus 355 v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~l~~-~~dg~i~iwd~ 419 (464)
T 3v7d_B 355 VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDN-------ILVS-GSENQFNIYNL 419 (464)
T ss_dssp EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSS-------EEEE-EETTEEEEEET
T ss_pred EEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCC-------EEEE-ecCCeEEEEEC
Confidence 9999998 5799999999999999999988766654 667788999999987 4444 44899999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=271.03 Aligned_cols=240 Identities=15% Similarity=0.236 Sum_probs=212.8
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCC-eEEEEECC--CCCEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD-VTTLDWNG--EGTLL 289 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~s~--~g~~l 289 (502)
.|.+.|.+++|+|++++|++++ ++.|++|++.++.... .......+|... |++++|+| ++++|
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~-------------~~~~~~~~h~~~~v~~~~~sp~~~~~~l 81 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKV-------------PPVVQFTGHGSSVVTTVKFSPIKGSQYL 81 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSS-------------CSEEEECTTTTSCEEEEEECSSTTCCEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCcc-------------ccceEEecCCCceEEEEEECcCCCCCEE
Confidence 6889999999999999999998 7899999998751000 011223456788 99999999 99999
Q ss_pred EEEECCCeEEEEECC---------CceEEEecCccCCeEEEEEecCCCEEEEEecC----CeEEEEEcCCCceEEEEeec
Q 010754 290 ATGSYDGQARIWSTN---------GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~ 356 (502)
++|+.||.|++||+. ......+..|..+|.+++|+|++++|++++.+ +.|++|| +++.+..+..|
T Consensus 82 ~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~ 159 (615)
T 1pgu_A 82 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH 159 (615)
T ss_dssp EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC
T ss_pred EEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecC
Confidence 999999999999984 35566778899999999999999999999988 6888888 67788889999
Q ss_pred cCCeEEEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEecCCC---cEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 010754 357 SGPTLDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQG---EVNCVKWDPT-GSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 357 ~~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~---~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~ 430 (502)
...|.++.|++++ .+++++.|+.|++||+.+++.+..+.+|.. .|++++|+|+ +++|++++.||.|++||+.++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 9999999998876 699999999999999999999999999999 9999999999 999999999999999999999
Q ss_pred eeEEEe-c---cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 431 KYVHDL-R---EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 431 ~~~~~~-~---~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.+..+ . .|..+|.+++|+ ++. .+++++.++.+++|+.
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~-------~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQ-------KFATVGADATIRVWDV 281 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSS-------EEEEEETTSEEEEEET
T ss_pred CEeEEecccccccCCceEEEEEc-CCC-------EEEEEcCCCcEEEEEC
Confidence 999999 6 899999999999 887 7888888899999974
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.98 E-value=2.8e-30 Score=248.98 Aligned_cols=233 Identities=16% Similarity=0.183 Sum_probs=201.3
Q ss_pred eEEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEec-CCCCccCCCCCCCceeEEEeeecCcccc--CCCCeEEEEEC
Q 010754 208 VTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTI-ADGTSNGGAQNGPLNVLVLKHVKGRTNE--KSKDVTTLDWN 283 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~s 283 (502)
...+.+|...|.+++|+|+++ +|++|+.||.|++|++ .++.. ..... |...|++++|+
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------------------~~~~~~~~~~~v~~l~~~ 110 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF------------------QALTNNEANLGICRICKY 110 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE------------------EECBSCCCCSCEEEEEEE
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce------------------EeccccCCCCceEEEEeC
Confidence 566779999999999999999 9999999999999999 76542 11223 67889999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC---------ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC-Cc--eEE
Q 010754 284 GEGTLLATGSYDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EE--WKQ 351 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~--~~~ 351 (502)
| +++|++++.||.|++||+.. ........|...|.+++|+|++ +++++.|+.|++||+++ +. ...
T Consensus 111 ~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~ 187 (342)
T 1yfq_A 111 G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI 187 (342)
T ss_dssp T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE
T ss_pred C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee
Confidence 9 99999999999999999764 3222223388999999999887 99999999999999988 54 334
Q ss_pred EEeeccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCC------cceEEEecCCC---------cEEEEEEcCCCCEEE
Q 010754 352 QFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGEN------RPIKTFAGHQG---------EVNCVKWDPTGSLLA 414 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~h~~---------~i~~l~~sp~g~~la 414 (502)
....+...+.++.|++ +..+++++.||.|++|++... +.+..+.+|.. .|++++|+|++++|+
T Consensus 188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 267 (342)
T 1yfq_A 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLY 267 (342)
T ss_dssp EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEE
T ss_pred eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEE
Confidence 4456788999999987 567999999999999999887 78889988865 999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEeccC-CCcEEEEEEccCCCCCCCCCccEEEEeecCc
Q 010754 415 SCSDDVTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILARLIPY 470 (502)
Q Consensus 415 s~s~dg~i~iwd~~~~~~~~~~~~h-~~~i~~v~~sp~g~~~~~~~~~l~las~~~~ 470 (502)
+|+.||.|++||+.+++++..+.+| ..+|++++ |+|. .+++++.|+.
T Consensus 268 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~-------~l~s~s~Dg~ 315 (342)
T 1yfq_A 268 TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDN-------ILCLATSDDT 315 (342)
T ss_dssp EEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSS-------EEEEEEECTH
T ss_pred EecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCC-------eEEEEecCCc
Confidence 9999999999999999999999998 99999999 9988 7788888886
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-29 Score=253.87 Aligned_cols=233 Identities=21% Similarity=0.389 Sum_probs=205.7
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
....+|...|.|++| ++++|++|+.||+|++||+.+++.. ....+|...|++++| ++++
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~-----------------~~~~~h~~~v~~l~~--~~~~ 185 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY--DERV 185 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC--CSSE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE-----------------EEEcCCCCcEEEEEE--CCCE
Confidence 344567788999887 7899999999999999999876531 122356788999999 7889
Q ss_pred EEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceE---EEEeeccCCeEEEE
Q 010754 289 LATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK---QQFEFHSGPTLDVD 364 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~v~ 364 (502)
|++|+.||.|++||+. +.....+..|...|.+++|++ ..+++|+.||.|++||+.++... ..+..|...|.++.
T Consensus 186 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 263 (435)
T 1p22_A 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263 (435)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEE
Confidence 9999999999999976 567778889999999999974 69999999999999999887755 66778999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE
Q 010754 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (502)
Q Consensus 365 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 444 (502)
| .+..+++++.|+.|++||+.+++.+..+.+|...|.++.|+ +.+|++|+.||.|++||+++++++..+.+|...|.
T Consensus 264 ~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 340 (435)
T 1p22_A 264 F-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 340 (435)
T ss_dssp E-ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred e-CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEE
Confidence 9 66789999999999999999999999999999999999995 78999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+++| ++. .+++++.|+.+++|+.
T Consensus 341 ~~~~--~~~-------~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 341 CIRF--DNK-------RIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEC--CSS-------EEEEEETTSCEEEEEH
T ss_pred EEEe--cCC-------EEEEEeCCCcEEEEEC
Confidence 9999 454 7888999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.1e-30 Score=252.23 Aligned_cols=242 Identities=21% Similarity=0.385 Sum_probs=202.9
Q ss_pred eEEeccCCCceE--EEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 208 VTILEGHTSEVC--ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 208 ~~~l~~H~~~V~--~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+....+|...+. +++|++ ..+++++.|+.|++|++.++.... .. ...|...|++++|+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~-------------~~---~~~~~~~v~~v~~s~~ 145 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSA-------------LA---ETDESTYVASVKWSHD 145 (401)
T ss_dssp EEECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEE-------------EE---ECCTTCCEEEEEECTT
T ss_pred eeeCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE-------------ee---ecCCCCCEEEEEECCC
Confidence 344457776654 456654 568888899999999998875311 11 1125678999999999
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC-CCceEEEEeeccCCeEEE
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~v 363 (502)
+++|++|+.||.|++||+. +.....+..|...|.+++|+ +++|++++.||.|++||++ .+..+..+..|...|.++
T Consensus 146 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 146 GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9999999999999999976 56777888999999999995 5799999999999999998 566788888999999999
Q ss_pred EecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC-CEEEEEe--CCCcEEEEECCCCeeEEEeccC
Q 010754 364 DWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG-SLLASCS--DDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 364 ~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g-~~las~s--~dg~i~iwd~~~~~~~~~~~~h 439 (502)
+|+++ ..|++++.|+.|++||++++.++..+.+|...|.+++|+|++ .++++|+ .||.|++||+.+++++..+. +
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~ 302 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A 302 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-C
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-C
Confidence 99875 468999999999999999999999999999999999999976 5666665 79999999999999998886 6
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEe--ecCceEEEEee
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILAR--LIPYFLYWICS 477 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las--~~~~~~iw~~~ 477 (502)
...|.+++|+|+|. .+++++ .++.+++|...
T Consensus 303 ~~~v~~~~~s~~~~-------~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 303 GSQVTSLIWSPHSK-------EIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp SSCEEEEEECSSSS-------EEEEEECTTTCEEEEEEEE
T ss_pred CCcEEEEEECCCCC-------eEEEEeecCCCcEEEEecC
Confidence 67899999999998 666644 57889999754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-30 Score=279.48 Aligned_cols=222 Identities=16% Similarity=0.205 Sum_probs=187.1
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
....||.+.|++++|+|++++||+|+.||+|+||+..+.... .. ..|...|++++|+| |++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-------------~~-----~~~~~~V~~l~fsp-g~~ 71 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-------------IK-----LEDRSAIKEMRFVK-GIY 71 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-------------EE-----CSSCCCEEEEEEET-TTE
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-------------EE-----cCCCCCEEEEEEcC-CCE
Confidence 344699999999999999999999999999999997654311 10 12466899999999 889
Q ss_pred EEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE-----------EEeec
Q 010754 289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ-----------QFEFH 356 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-----------~~~~~ 356 (502)
|++++.|+.|+|||+.. ..+..+. |...|++++|+|++++|++|+.||+|++||++++.... .+..|
T Consensus 72 L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 72 LVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp EEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred EEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 99999999999999874 4455554 77899999999999999999999999999999887531 12457
Q ss_pred cCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecC------------------CCcEEEEEEcCCCCEEEEE
Q 010754 357 SGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGH------------------QGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 357 ~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h------------------~~~i~~l~~sp~g~~las~ 416 (502)
.++|.+++|+|+ ..+++++.|+.| +||+++++++..+.+| ...|++++|+|+|++||+|
T Consensus 151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg 229 (902)
T 2oaj_A 151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI 229 (902)
T ss_dssp CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence 789999999986 578999999999 9999999998888766 4679999999999999999
Q ss_pred eCCCcEEEEECCCCeeEEE--ec---c-------------CCCcEEEEEEccC
Q 010754 417 SDDVTAKIWNMKQDKYVHD--LR---E-------------HSKEIYTIRWSPT 451 (502)
Q Consensus 417 s~dg~i~iwd~~~~~~~~~--~~---~-------------h~~~i~~v~~sp~ 451 (502)
+.||+|++||+++++++.. +. . |..+|++++|+|.
T Consensus 230 s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~ 282 (902)
T 2oaj_A 230 HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCE 282 (902)
T ss_dssp ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEEC
T ss_pred ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEec
Confidence 9999999999999988753 31 2 3457999999764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=255.64 Aligned_cols=212 Identities=24% Similarity=0.391 Sum_probs=182.6
Q ss_pred eEEeccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-C
Q 010754 208 VTILEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-E 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~ 285 (502)
...+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++.....+ ......+|...|.+++|++ +
T Consensus 150 ~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~------------~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF------------GSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEE------------CCCSSSSCCSCEEEEEECSSS
T ss_pred eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEe------------ecccCCCCccCeEEEEeecCC
Confidence 4578899999999999997 567999999999999999887632110 0112246778999999987 8
Q ss_pred CCEEEEEECCCeEEEEECC--CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC-----
Q 010754 286 GTLLATGSYDGQARIWSTN--GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG----- 358 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~----- 358 (502)
+++|++|+.||.|++||++ +.....+.+|...|.+++|+|++++|++|+.||+|++||++++..+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 8999999999999999986 466778899999999999999999999999999999999999998888765432
Q ss_pred --CeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEE----ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 010754 359 --PTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTF----AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 359 --~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~----~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~ 431 (502)
.+.+++|++++ .+++|+.||.|++||+..++.+..+ .+|.+.|++++|+|+|++|++|+.||+|+||++...+
T Consensus 298 ~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 47899998754 5788899999999999999888777 6799999999999999999999999999999987654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=258.70 Aligned_cols=246 Identities=14% Similarity=0.111 Sum_probs=172.3
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC----
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG---- 284 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---- 284 (502)
.....|...+....+++++.+||+|+.|++|+|||+.++.. ..........+|...|++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~------------~~~~~~~~~~gH~~~v~~v~~~p~~~~ 150 (393)
T 4gq1_A 83 YSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETI------------ITQHVLGGKSGHHNFVNDIDIADVYSA 150 (393)
T ss_dssp EECC----------CCEEEEEEEEEETTSCEEEEEEETTEE------------EEEEEECTTTSCSSCEEEEEEEEEECT
T ss_pred ccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcc------------ceeeeecccCCCCCceEEEEEcccccc
Confidence 34455666666666666788999999999999999987642 11223455678899999999997
Q ss_pred ----CCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEE-----
Q 010754 285 ----EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF----- 353 (502)
Q Consensus 285 ----~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~----- 353 (502)
++++||+|+.|++|+|||+. +.....+..|..+|.+++|+|++ .+|++++.|++|++||+++++.....
T Consensus 151 ~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 151 DNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp TCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------
T ss_pred ccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC
Confidence 88999999999999999975 56677788899999999999987 47999999999999999887654332
Q ss_pred --------------------eeccCCeEEEEec--CCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcC---
Q 010754 354 --------------------EFHSGPTLDVDWR--NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDP--- 408 (502)
Q Consensus 354 --------------------~~~~~~v~~v~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp--- 408 (502)
..|...+.++.|. ++..+++++.|+.+++||+..+.....+..|...+..+.+.|
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence 2355567788884 356789999999999999998877776666665555444333
Q ss_pred -----------------CCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCce
Q 010754 409 -----------------TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYF 471 (502)
Q Consensus 409 -----------------~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~ 471 (502)
++.++++|+.||.|+|||+.+++++..+..|..+|++++|||||+ .|.+|+.++ +
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~-------~LA~as~~G-v 382 (393)
T 4gq1_A 311 GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS-------HLAIATEGS-V 382 (393)
T ss_dssp EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS-------EEEEEESSE-E
T ss_pred cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC-------EEEEEeCCC-e
Confidence 344678889999999999999999888888999999999999998 555554444 4
Q ss_pred EEE
Q 010754 472 LYW 474 (502)
Q Consensus 472 ~iw 474 (502)
.+|
T Consensus 383 ~lv 385 (393)
T 4gq1_A 383 LLT 385 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-30 Score=254.92 Aligned_cols=241 Identities=18% Similarity=0.308 Sum_probs=201.5
Q ss_pred ceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC-CCCEEEEEEC
Q 010754 217 EVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG-EGTLLATGSY 294 (502)
Q Consensus 217 ~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-~g~~l~s~~~ 294 (502)
....++++|+.. ++++++.||.|+||++.+..... .......+|...|++++|+| ++++|++|+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-------------KNVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-------------TTCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-------------CCCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 345688999764 55568899999999996542110 01223456788999999999 9999999999
Q ss_pred CCeEEEEECCC--------ceEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEEE--eeccCCeEEE
Q 010754 295 DGQARIWSTNG--------DLKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQF--EFHSGPTLDV 363 (502)
Q Consensus 295 dg~i~iwd~~~--------~~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~v 363 (502)
||.|+||++.. .....+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ ..|...|.++
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 182 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEE
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEE
Confidence 99999999864 4567888999999999999998 69999999999999999999999998 7899999999
Q ss_pred EecCCC-EEEEEeCCCeEEEEEcCCCcceEEE-ecCCCc-EEEEEEcCCCCEEEEE---eCCCcEEEEECCCCee-EEEe
Q 010754 364 DWRNNV-SFATSSTDNMIYVCKIGENRPIKTF-AGHQGE-VNCVKWDPTGSLLASC---SDDVTAKIWNMKQDKY-VHDL 436 (502)
Q Consensus 364 ~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~-i~~l~~sp~g~~las~---s~dg~i~iwd~~~~~~-~~~~ 436 (502)
+|++++ .|++++.|+.|++||+++++.+..+ .+|.+. +.++.|+|++++|++| +.|+.|++||+++++. +...
T Consensus 183 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 183 DWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp EECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE
T ss_pred EECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE
Confidence 998754 6899999999999999999999988 788776 8999999999999999 7899999999988764 3232
Q ss_pred c-cCCCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEee
Q 010754 437 R-EHSKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWICS 477 (502)
Q Consensus 437 ~-~h~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~~ 477 (502)
. .|...|.+++|+|+|. .+++++ .|+.+++|...
T Consensus 263 ~~~~~~~v~~~~~s~~~~-------~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTN-------IVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp ECCCCSSCEEEEEETTTT-------EEEEEETTCSCEEEEEEC
T ss_pred eccCCCceeEEEEcCCCC-------EEEEEEcCCCeEEEEEec
Confidence 2 5777899999999998 554444 58999999754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-31 Score=251.71 Aligned_cols=223 Identities=26% Similarity=0.416 Sum_probs=181.8
Q ss_pred ccccCCCCceeeeCC---C---ceEEeccCCCceEEEEEcC--CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE
Q 010754 191 DIATTSASESFEIPN---S---DVTILEGHTSEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV 262 (502)
Q Consensus 191 ~~~~~~~~~~~~~~~---~---~~~~l~~H~~~V~~~~~~p--~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 262 (502)
.+++.+.+..+.+.. . .+..+.+|.+.|++++|+| ++++|++|+.|++|++||+.++... .
T Consensus 27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~-----------~ 95 (316)
T 3bg1_A 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWE-----------K 95 (316)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCC-----------E
T ss_pred EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcce-----------E
Confidence 455555555555432 2 3567899999999999986 4899999999999999999865311 0
Q ss_pred EeeecCccccCCCCeEEEEECCC--CCEEEEEECCCeEEEEECCCce----EEEecCccCCeEEEEEecC----------
Q 010754 263 LKHVKGRTNEKSKDVTTLDWNGE--GTLLATGSYDGQARIWSTNGDL----KCTLSKHKGPIFSLKWNKK---------- 326 (502)
Q Consensus 263 ~~~~~~~~~~~~~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~l~~~~~---------- 326 (502)
. ....+|...|++++|+|+ +.+|++|+.||.|++||+.... ...+..|...|.+++|+|+
T Consensus 96 ~----~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 96 S----HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp E----EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------C
T ss_pred E----EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccc
Confidence 1 112356788999999998 8899999999999999987531 3455689999999999997
Q ss_pred -------CCEEEEEecCCeEEEEEcCCC---ceEEEEeeccCCeEEEEecCC-----CEEEEEeCCCeEEEEEcCCCc--
Q 010754 327 -------GDYLLTGSCDKTAIVWDVKTE---EWKQQFEFHSGPTLDVDWRNN-----VSFATSSTDNMIYVCKIGENR-- 389 (502)
Q Consensus 327 -------~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~v~~~~~-----~~~~~~~~d~~i~i~d~~~~~-- 389 (502)
+++|++|+.|++|++||++.. ..+..+..|...|.+++|+|+ ..|++++.|++|++|++....
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~ 251 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN 251 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc
Confidence 468999999999999999765 456677889999999999886 579999999999999997631
Q ss_pred --ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 390 --PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 390 --~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
....+..|...|.+++|+|++++||+|+.||+|+||+..
T Consensus 252 ~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 252 TWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred chhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 234566789999999999999999999999999999975
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-30 Score=255.37 Aligned_cols=252 Identities=12% Similarity=0.020 Sum_probs=200.6
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCC---ccCCCCCCCc-----ee----------E----------------
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGT---SNGGAQNGPL-----NV----------L---------------- 261 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~---~~~~~~~~~~-----~~----------~---------------- 261 (502)
.++.+++|+|+|++|++++ ++.|++||+.+++ .......... .. .
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5789999999999776664 6899999998887 3221111000 00 0
Q ss_pred ------EEeeecCccccCCCCeEEEEECCCCCEE-EEEECCCeEEEEECC---CceEEEec--CccCCeEEEEEecCCCE
Q 010754 262 ------VLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTN---GDLKCTLS--KHKGPIFSLKWNKKGDY 329 (502)
Q Consensus 262 ------~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~s~~~dg~i~iwd~~---~~~~~~~~--~~~~~v~~l~~~~~~~~ 329 (502)
...........|...|++++|+|++++| ++|+.||.|+|||+. +.....+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 0000000112455679999999999996 889999999999976 44555554 56788999999999999
Q ss_pred EEEEecCCeEEEEEcCCCceEE----EEeeccCCeEEEEecCC---C-EEEEEeCCCeEEEEEcCCCcceEE-EecCCCc
Q 010754 330 LLTGSCDKTAIVWDVKTEEWKQ----QFEFHSGPTLDVDWRNN---V-SFATSSTDNMIYVCKIGENRPIKT-FAGHQGE 400 (502)
Q Consensus 330 l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~v~~~~~---~-~~~~~~~d~~i~i~d~~~~~~~~~-~~~h~~~ 400 (502)
|++++.+|.|++|++.++.... .+..|...|.+++|+++ + .+++++.|+.|++||+.++..+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998877544 67789999999999886 5 688999999999999999998887 5589999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC-------------------------CCcEEEEEEccCCCCC
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-------------------------SKEIYTIRWSPTGSGT 455 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h-------------------------~~~i~~v~~sp~g~~~ 455 (502)
|++++|+ ++++|++|+.|+.|+|||+.+++++..+..+ ...|.+++|+|+|.
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-- 320 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP-- 320 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS--
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC--
Confidence 9999999 9999999999999999999999988887632 35699999999988
Q ss_pred CCCCccEEEEe-ecCceEEEEe
Q 010754 456 NNPNQQLILAR-LIPYFLYWIC 476 (502)
Q Consensus 456 ~~~~~~l~las-~~~~~~iw~~ 476 (502)
.+++++ .++.+++|..
T Consensus 321 -----~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 -----FVAFFVEATKCIIILEM 337 (450)
T ss_dssp -----EEEEEETTCSEEEEEEE
T ss_pred -----EEEEEECCCCeEEEEEe
Confidence 666676 6888999987
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=264.15 Aligned_cols=253 Identities=17% Similarity=0.244 Sum_probs=219.5
Q ss_pred CceEEeccCCCc-eEEEEEcC--CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 206 SDVTILEGHTSE-VCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 206 ~~~~~l~~H~~~-V~~~~~~p--~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
.....+.+|.+. |++++|+| ++++|++|+.||+|++|++.++.... .. ..........|...|.+++|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~-----~~----~~~~~~~~~~~~~~v~~~~~ 124 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN-----SV----EVNVKSEFQVLAGPISDISW 124 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT-----EE----EEEEEEEEECCSSCEEEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc-----cc----cccccchhhcccccEEEEEE
Confidence 467889999999 99999999 99999999999999999996541100 00 01111223346778999999
Q ss_pred CCCCCEEEEEECC----CeEEEEECCCceEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCCCceEEEEeecc
Q 010754 283 NGEGTLLATGSYD----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 283 s~~g~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
+|++++|++++.+ +.|++|| .+.....+..|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+..|.
T Consensus 125 s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 125 DFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 203 (615)
T ss_dssp CTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred eCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence 9999999999988 7999999 5667788899999999999999997 89999999999999999999999999999
Q ss_pred C---CeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEE-e---cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 358 G---PTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF-A---GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 358 ~---~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~-~---~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
. .+.+++|+++ ..+++++.|+.|++||+.+++.+..+ . +|...|.+++|+ ++++|++++.||.|++||+.
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC
Confidence 9 9999999876 46888999999999999999999998 6 899999999999 99999999999999999999
Q ss_pred CCeeEEEeccC----CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 429 QDKYVHDLREH----SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 429 ~~~~~~~~~~h----~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+++++..+..+ ...+.++.|+ ++. .+++++.++.+++|...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 283 TSKCVQKWTLDKQQLGNQQVGVVAT-GNG-------RIISLSLDGTLNFYELG 327 (615)
T ss_dssp TTEEEEEEECCTTCGGGCEEEEEEE-ETT-------EEEEEETTSCEEEEETT
T ss_pred CCcEEEEEcCCCCcccCceeEEEeC-CCC-------eEEEEECCCCEEEEECC
Confidence 99999988866 4678999996 665 78888999999999754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=252.18 Aligned_cols=237 Identities=24% Similarity=0.437 Sum_probs=194.3
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+..+.+|...|.+++|+ +..|++|+.||+|++||+.+++.. .....|...|.+++| +++
T Consensus 192 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~-----------------~~~~~~~~~v~~~~~--~~~ 250 (445)
T 2ovr_B 192 IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL-----------------HVLMGHVAAVRCVQY--DGR 250 (445)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE-----------------EEEECCSSCEEEEEE--CSS
T ss_pred EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE-----------------EEEcCCcccEEEEEE--CCC
Confidence 44455566666665553 344566666666666665544311 122356778999999 788
Q ss_pred EEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 288 LLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
++++|+.||.|++||+. +.....+..|...|.++.| ++.++++++.|+.|++||+++++.+..+..|...+.++.+.
T Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~ 328 (445)
T 2ovr_B 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 328 (445)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe
Confidence 99999999999999976 5667788899999999999 78899999999999999999999999999999999999985
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCcceEEEec---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-----cc
Q 010754 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL-----RE 438 (502)
Q Consensus 367 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~-----~~ 438 (502)
+..+++++.||.|++||+.+++++..+.+ |...|++++|+ +++|++|+.||.|++||+.+++.+..+ .+
T Consensus 329 -~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 405 (445)
T 2ovr_B 329 -DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405 (445)
T ss_dssp -TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGG
T ss_pred -CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCC
Confidence 45899999999999999999999999987 88899999996 679999999999999999999999888 47
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEeecCc----eEEEEee
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILARLIPY----FLYWICS 477 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~----~~iw~~~ 477 (502)
|.+.|++++|+|+|. .+++++.|+. +.+|++.
T Consensus 406 ~~~~v~~~~~s~~~~-------~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 406 SGGVVWRIRASNTKL-------VCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp GTCEEEEEEECSSEE-------EEEEECSSSSSCCEEEEEECC
T ss_pred CCceEEEEEecCCEE-------EEEEcccCCCCccEEEEEECC
Confidence 888999999999987 6667777776 6777654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=250.59 Aligned_cols=236 Identities=20% Similarity=0.361 Sum_probs=208.6
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|.+.|.. ++++++++|++|+.||+|++||+.+++.. ....+|...|++++|+ +
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~-----------------~~~~~h~~~v~~~~~~--~ 169 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL-----------------RTLVGHTGGVWSSQMR--D 169 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE-----------------EECCCCSSCEEEEEEE--T
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEE-----------------EEEcCCCCCEEEEEec--C
Confidence 34678999987643 35557899999999999999999876532 1223567889999997 5
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
+++++|+.||.|++||+. +.....+..|...|.++.|+ ++.+++|+.||+|++||+.+++.+..+..|...+.++.|
T Consensus 170 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 170 NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 699999999999999976 56777888999999999996 578999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEE
Q 010754 366 RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (502)
Q Consensus 366 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 445 (502)
.+..+++++.|+.|++||+.+++++..+.+|...|.++.| ++.+|++|+.||.|++||+++++++..+.+|...+.+
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~ 324 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 324 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE
Confidence 6677999999999999999999999999999999999999 7899999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 446 IRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.+++ . .+++++.|+.+++|+.
T Consensus 325 ~~~~~--~-------~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 325 MELKD--N-------ILVSGNADSTVKIWDI 346 (445)
T ss_dssp EEEET--T-------EEEEEETTSCEEEEET
T ss_pred EEEeC--C-------EEEEEeCCCeEEEEEC
Confidence 88854 3 6788888999999975
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=254.15 Aligned_cols=226 Identities=12% Similarity=0.037 Sum_probs=191.3
Q ss_pred eccCCCceEEEEEcCCCCeE-EEEeCCCcEEEEecC--CCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 211 LEGHTSEVCACAWSPAGSLL-ASGSGDSTARIWTIA--DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
..+|.+.|.+++|+|++++| ++|+.||+|+||++. ++.... .+.. ..+...|++++|+|+++
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~----------~~~~-----~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK----------LRKR-----FCFSKRPNAISIAEDDT 162 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE----------EEEE-----EECSSCEEEEEECTTSS
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee----------eeec-----ccCCCCceEEEEcCCCC
Confidence 45788999999999999986 899999999999998 554221 1110 13456799999999999
Q ss_pred EEEEEECCCeEEEEECCCce-----EEEecCccCCeEEEEEecC---CCEEEEEecCCeEEEEEcCCCceEEE-EeeccC
Q 010754 288 LLATGSYDGQARIWSTNGDL-----KCTLSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSG 358 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~l~~~~~---~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~ 358 (502)
+|++|+.+|.|++|++.... ...+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999976432 2266789999999999999 99999999999999999999998877 457999
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecC-------------------------CCcEEEEEEcCCCCEE
Q 010754 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-------------------------QGEVNCVKWDPTGSLL 413 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-------------------------~~~i~~l~~sp~g~~l 413 (502)
.|.+++|+.+..+++++.|+.|++||+.+++.+..+..+ ...|.+++|+|++++|
T Consensus 243 ~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 243 FVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp CEEEEEECSTTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred ceEEEEECCCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 999999995567999999999999999999988888632 3569999999999999
Q ss_pred EEEe-CCCcEEEEEC--CCC---eeEEEeccCCCcEEEEEEccCC
Q 010754 414 ASCS-DDVTAKIWNM--KQD---KYVHDLREHSKEIYTIRWSPTG 452 (502)
Q Consensus 414 as~s-~dg~i~iwd~--~~~---~~~~~~~~h~~~i~~v~~sp~g 452 (502)
++++ .|+.|+||++ .++ +++..+..| ..|.+++|+|++
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred EEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 9999 8999999999 565 777788887 789999999954
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=284.18 Aligned_cols=263 Identities=23% Similarity=0.377 Sum_probs=217.4
Q ss_pred cccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEee
Q 010754 190 MDIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 265 (502)
..+++.+.+..+.++ ...+..+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++..
T Consensus 628 ~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~--------------- 692 (1249)
T 3sfz_A 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV--------------- 692 (1249)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---------------
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE---------------
Confidence 334444444444442 3457888999999999999999999999999999999999887532
Q ss_pred ecCccccCCCCeEEEEECC--CCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEE
Q 010754 266 VKGRTNEKSKDVTTLDWNG--EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVW 342 (502)
Q Consensus 266 ~~~~~~~~~~~v~~l~~s~--~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~w 342 (502)
.....|...|.+++|+| ++.++++|+.||.|++||+. +.....+.+|...|.+++|+|++++|++++.||+|++|
T Consensus 693 --~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw 770 (1249)
T 3sfz_A 693 --HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770 (1249)
T ss_dssp --EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred --EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence 11234678899999999 55689999999999999976 46677888999999999999999999999999999999
Q ss_pred EcCCCceEEEEe-------------------------------------------------------eccCCeEEEEecC
Q 010754 343 DVKTEEWKQQFE-------------------------------------------------------FHSGPTLDVDWRN 367 (502)
Q Consensus 343 d~~~~~~~~~~~-------------------------------------------------------~~~~~v~~v~~~~ 367 (502)
|+.++.....+. .|...+.++.|++
T Consensus 771 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp 850 (1249)
T 3sfz_A 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP 850 (1249)
T ss_dssp EGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred eCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC
Confidence 998776544332 4556778888876
Q ss_pred C-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC------------------
Q 010754 368 N-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK------------------ 428 (502)
Q Consensus 368 ~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~------------------ 428 (502)
+ ..+++++.++.|++|++.++..+..+.+|...|++++|+|+|++|++++.||.|++|++.
T Consensus 851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 930 (1249)
T 3sfz_A 851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVF 930 (1249)
T ss_dssp STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEE
Confidence 4 458888999999999999999999999999999999999999999999999988888743
Q ss_pred -------------------------------------------------------------CCeeEEEeccCCCcEEEEE
Q 010754 429 -------------------------------------------------------------QDKYVHDLREHSKEIYTIR 447 (502)
Q Consensus 429 -------------------------------------------------------------~~~~~~~~~~h~~~i~~v~ 447 (502)
+++.+..+.+|...|++++
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~ 1010 (1249)
T 3sfz_A 931 QENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ 1010 (1249)
T ss_dssp ETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE
T ss_pred cCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE
Confidence 2344455667888999999
Q ss_pred EccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 448 WSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 448 ~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+|+|. .+++++.|+.+++|..
T Consensus 1011 ~s~dg~-------~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A 1011 FTADGK-------TLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp ECSSSS-------CEEEECSSSBEEEEET
T ss_pred ECCCCC-------EEEEEcCCCEEEEEEC
Confidence 999988 7888888999999963
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=248.78 Aligned_cols=235 Identities=12% Similarity=0.149 Sum_probs=181.6
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+..+.+|.+.|++++|+|+|++|++|+.|+ ++||++.+.... ... +...+..++|.++++
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------~~~--------~~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------MSQ--------EMRHLSKVRMLHRTN 71 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------EEE--------ECSCCCEEEECTTSS
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------eee--------ecCCeEEEEEcCCCC
Confidence 446688999999999999999999998775 789998764321 000 012477888988888
Q ss_pred EE-EEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEE
Q 010754 288 LL-ATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 288 ~l-~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~ 364 (502)
.+ ++|+.|+.|++||... .....+ .+...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. +...++
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRI-KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEE-ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred EEEEEECCccEEEEEECCCCcEEEEE-ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEE
Confidence 77 5677789999999764 444444 477799999998763 4443 5889999999988 66555544 233344
Q ss_pred ecCCCEEEE--EeCCCeEEEEEcCCCc---------------c-eEEEecCCCcEEEEEEcCCCCEEEEEeCCCc-EEEE
Q 010754 365 WRNNVSFAT--SSTDNMIYVCKIGENR---------------P-IKTFAGHQGEVNCVKWDPTGSLLASCSDDVT-AKIW 425 (502)
Q Consensus 365 ~~~~~~~~~--~~~d~~i~i~d~~~~~---------------~-~~~~~~h~~~i~~l~~sp~g~~las~s~dg~-i~iw 425 (502)
+++ ..+++ ++.+|.|++||+.++. + +..+.+|.+.|++++|+|+|++||+|+.||+ |+||
T Consensus 145 ~s~-~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 145 FSN-GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp EET-TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred EEc-cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 445 55555 5789999999999865 2 7889999999999999999999999999998 9999
Q ss_pred ECCCCeeEEEec-c-CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 426 NMKQDKYVHDLR-E-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 426 d~~~~~~~~~~~-~-h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|+++++++..+. + |..+|++++|+|+|. .+++++.|+.+++|+..
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~-------~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGS-------KLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSC-------EEEEEETTCEEEEEESS
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCC-------EEEEEECCCEEEEEEcc
Confidence 999999999998 5 999999999999998 78888888999999753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=251.70 Aligned_cols=225 Identities=9% Similarity=0.028 Sum_probs=180.7
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 010754 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 301 (502)
Q Consensus 222 ~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iw 301 (502)
.+.+++.+|++|+.||+|++||+.+++... .+. ...|.++.|+|+ +++|+.|+.|++|
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~----------~~~---------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTIT----------TIT---------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEE----------EEE---------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEE----------EEe---------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 444578899999999999999998876422 111 235777888888 9999999999999
Q ss_pred ECCCce----------EEE-ecCccCCeEEEEEec--CCCEEEEEecCCeEEEEEcCCCceEEEEee-ccCCeEEEEecC
Q 010754 302 STNGDL----------KCT-LSKHKGPIFSLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-HSGPTLDVDWRN 367 (502)
Q Consensus 302 d~~~~~----------~~~-~~~~~~~v~~l~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~v~~~~ 367 (502)
+..+.. ... ...|..+|.+++|+| ++++|++++.||+|++||+++++....+.. +...+.+++|+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC
Confidence 866432 222 236678999999999 999999999999999999999998776644 455799999988
Q ss_pred CC-EEEEEeCCCeEEEEEcCCCcce-EEEec-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc---CCC
Q 010754 368 NV-SFATSSTDNMIYVCKIGENRPI-KTFAG-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---HSK 441 (502)
Q Consensus 368 ~~-~~~~~~~d~~i~i~d~~~~~~~-~~~~~-h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~---h~~ 441 (502)
++ .+++|+.|+.|++||+++++.+ ..+.+ |.+.|++++|+|+|.+|++++ |+.|++||+++++++..+.. |..
T Consensus 181 dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 181 DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF 259 (343)
T ss_dssp TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence 65 4777899999999999999987 88888 999999999999999999999 45999999999887666554 444
Q ss_pred cEE--EEEEccCCCCCCCCCccEEEEee-cCceEEEEe
Q 010754 442 EIY--TIRWSPTGSGTNNPNQQLILARL-IPYFLYWIC 476 (502)
Q Consensus 442 ~i~--~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~~ 476 (502)
++. +++|+|+|. .+++++. ++.+++|.+
T Consensus 260 ~~~~~~~~~~~~g~-------~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 260 KTGTVTYDIDDSGK-------NMIAYSNESNSLTIYKF 290 (343)
T ss_dssp --CCEEEEECTTSS-------EEEEEETTTTEEEEEEE
T ss_pred cccceEEEECCCCC-------EEEEecCCCCcEEEEEE
Confidence 444 699999998 6666667 899999965
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=245.48 Aligned_cols=199 Identities=19% Similarity=0.139 Sum_probs=164.9
Q ss_pred cCCCceEEEEEcCCCCeEEEEe--CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
.+...+.+++|+|||++|++++ .|++|+|||+.+++.. ..+ .|...|++++|+|+|++|+
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~-------------~~~-----~~~~~V~~v~fspdg~~l~ 192 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK-------------FEI-----ETRGEVKDLHFSTDGKVVA 192 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE-------------EEE-----ECSSCCCEEEECTTSSEEE
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE-------------EEe-----CCCCceEEEEEccCCceEE
Confidence 4456689999999999887554 6899999999886531 111 2456799999999999999
Q ss_pred EEECCCeEEEEECCCceEE--EecCccCCeEEEEEecCCCEEEEEecCC----eEEEEEcCCCce----EEEEeeccCCe
Q 010754 291 TGSYDGQARIWSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDK----TAIVWDVKTEEW----KQQFEFHSGPT 360 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~s~~~d~----~i~~wd~~~~~~----~~~~~~~~~~v 360 (502)
+++.++.+.+|...+.... ....|...|.+++|+|+++++++++.|+ .+++||+..... ...+..|...|
T Consensus 193 s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V 272 (365)
T 4h5i_A 193 YITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI 272 (365)
T ss_dssp EECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE
T ss_pred eccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe
Confidence 9997665555555555443 3456888999999999999999999887 688999877653 34566788899
Q ss_pred EEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 361 LDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 361 ~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
.+++|+|++ .|++|+.|+.|+|||+.+++++.++ .+|...|++|+|+|||++|||||.|++|+|||+..
T Consensus 273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 273 TSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999998875 5788999999999999999999886 78999999999999999999999999999999864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=249.28 Aligned_cols=220 Identities=12% Similarity=0.189 Sum_probs=176.2
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
+|...|.+|+|+|+|.+||+++.||+|++|+... .+..+.....-....|.+++|||+|++||+|
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------------~l~~l~~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------------MLTNLDSKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------------EEEECCCSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------------eeeeccCCCccccccEEEEEEcCCCCEEEEE
Confidence 5688999999999999999999999999999543 1111111100112369999999999999999
Q ss_pred ECCCeEEEEECCCce--------EEEe----cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce---EEEE-eec
Q 010754 293 SYDGQARIWSTNGDL--------KCTL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW---KQQF-EFH 356 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~--------~~~~----~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~-~~~ 356 (502)
+.||+|+|||+.+.. ...+ .+|...|.+++|+|+| +++++.|++|++||+.++.. .+.+ .+|
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h 225 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS 225 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc
Confidence 999999999988652 4555 6788899999999999 88999999999999988773 3556 378
Q ss_pred cCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEE--cCCCCEEEEEeCCCcEEEEECCC-----
Q 010754 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW--DPTGSLLASCSDDVTAKIWNMKQ----- 429 (502)
Q Consensus 357 ~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~--sp~g~~las~s~dg~i~iwd~~~----- 429 (502)
...|.+++|+ +..+++++ ++.|++||+.+++......+|.+.|..++| +|++..|++++.||+ ++|....
T Consensus 226 ~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~sp 302 (588)
T 2j04_A 226 RRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTA 302 (588)
T ss_dssp SSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEEC
T ss_pred cCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECC
Confidence 8899999999 67788776 699999999988774444489999999999 999999999999999 9998742
Q ss_pred ------------------CeeEEEeccCCCcEEEEEEccCCC
Q 010754 430 ------------------DKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 430 ------------------~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+..+..+. +...|++++|||||.
T Consensus 303 d~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 303 DNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGY 343 (588)
T ss_dssp CCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSS
T ss_pred CceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCC
Confidence 11122222 244599999999998
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=228.83 Aligned_cols=249 Identities=15% Similarity=0.189 Sum_probs=182.4
Q ss_pred eEEEEEcCCCC---eEEEEeCCCcEEEEecCCC---CccCCCCCCCceeEEEeeec--------CccccCCCCeEEEEEC
Q 010754 218 VCACAWSPAGS---LLASGSGDSTARIWTIADG---TSNGGAQNGPLNVLVLKHVK--------GRTNEKSKDVTTLDWN 283 (502)
Q Consensus 218 V~~~~~~p~~~---~l~sgs~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~l~~s 283 (502)
|.++-|-..|- .+++++. ..|++|+..++ +.......+...+..+.... ..-+-+...|.+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55666655443 6778876 78999999887 33333333332222221111 0111234568899999
Q ss_pred CC----CCEEEEEEC--------------------CCeEEEEECC--CceEEEecCccCCeEEEEEec---CCCEEEEEe
Q 010754 284 GE----GTLLATGSY--------------------DGQARIWSTN--GDLKCTLSKHKGPIFSLKWNK---KGDYLLTGS 334 (502)
Q Consensus 284 ~~----g~~l~s~~~--------------------dg~i~iwd~~--~~~~~~~~~~~~~v~~l~~~~---~~~~l~s~~ 334 (502)
|+ ++.+++++. |+.|++|++. ++.+..+..|...+..++|++ ++..|++++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS 200 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTT 200 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEE
T ss_pred CCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEec
Confidence 99 777777653 8899999973 566777788999999999999 779999999
Q ss_pred cCCeEEEEEcCCCceEEEEeecc---CCeEEEEecCCCEE-------------EEEeCCCeEEEEEcCCCcceEEE----
Q 010754 335 CDKTAIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSF-------------ATSSTDNMIYVCKIGENRPIKTF---- 394 (502)
Q Consensus 335 ~d~~i~~wd~~~~~~~~~~~~~~---~~v~~v~~~~~~~~-------------~~~~~d~~i~i~d~~~~~~~~~~---- 394 (502)
.|++|+|||+.++++++++..|. ..+.+++|+|++.+ ++|+.|++|++||..+++.+..+
T Consensus 201 ~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~ 280 (356)
T 2w18_A 201 IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCL 280 (356)
T ss_dssp TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECC
T ss_pred CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeec
Confidence 99999999999999999998644 35667788887663 56788999999999999887766
Q ss_pred -ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE-EEEEccCCCCCCCCCccEEEEeecCceE
Q 010754 395 -AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY-TIRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 395 -~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~-~v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
.+|...+.+..++ +.++|+|+.||+|+|||+.++++++++.+|...+. .++|||||+ .|++|+.|++++
T Consensus 281 p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~-------~LaSGS~D~TIk 351 (356)
T 2w18_A 281 PPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDS-------HLLAGQKDGNIF 351 (356)
T ss_dssp CTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSS-------EEEEECTTSCEE
T ss_pred cCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCC-------EEEEEECCCcEE
Confidence 3676666555554 88999999999999999999999999999987655 589999998 888899999999
Q ss_pred EEEe
Q 010754 473 YWIC 476 (502)
Q Consensus 473 iw~~ 476 (502)
+|+.
T Consensus 352 lWd~ 355 (356)
T 2w18_A 352 VYHY 355 (356)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9974
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=235.31 Aligned_cols=222 Identities=21% Similarity=0.337 Sum_probs=182.8
Q ss_pred ceEEeccCCCceEEEEEcC--CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 207 DVTILEGHTSEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p--~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
....+.+|...|++++|+| ++.+|++|+.||+|++||+.++....... .... ......|...|++++|+|
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~----~~~~----~~~~~~~~~~v~~~~~~~ 120 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR----RWNK----LCTLNDSKGSLYSVKFAP 120 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC----SEEE----EEEECCCSSCEEEEEECC
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc----Ccce----eeeecccCCceeEEEEcC
Confidence 4567789999999999999 69999999999999999998765321110 0011 122235678899999999
Q ss_pred C--CCEEEEEECCCeEEEEECCCce-EEE-------------ecCccCCeEEEEEecC---CCEEEEEecCCeEEEEEcC
Q 010754 285 E--GTLLATGSYDGQARIWSTNGDL-KCT-------------LSKHKGPIFSLKWNKK---GDYLLTGSCDKTAIVWDVK 345 (502)
Q Consensus 285 ~--g~~l~s~~~dg~i~iwd~~~~~-~~~-------------~~~~~~~v~~l~~~~~---~~~l~s~~~d~~i~~wd~~ 345 (502)
+ +.+|++|+.||.|++||+.... ... ...|...+.+++|+|+ +.+|++++.|+.+.+|+..
T Consensus 121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence 9 9999999999999999976321 111 1257889999999997 8999999999999999888
Q ss_pred CCce--EEEEeeccCCeEEEEecCCC-----EEEEEeCCCeEEEEEcCCC------------------------------
Q 010754 346 TEEW--KQQFEFHSGPTLDVDWRNNV-----SFATSSTDNMIYVCKIGEN------------------------------ 388 (502)
Q Consensus 346 ~~~~--~~~~~~~~~~v~~v~~~~~~-----~~~~~~~d~~i~i~d~~~~------------------------------ 388 (502)
.+.. +..+..|...|.+++|++++ .+++++.||.|++||++.+
T Consensus 201 ~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp TSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred CCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 7765 66677799999999999884 7999999999999999875
Q ss_pred ----------------cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 389 ----------------RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 389 ----------------~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
..+..+.+|...|++++|+|++++|++|+.||.|+|||+.+++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 567778899999999999999999999999999999999987655443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=233.40 Aligned_cols=228 Identities=17% Similarity=0.274 Sum_probs=189.1
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCC---------------------------Cc
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNG---------------------------PL 258 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~---------------------------~~ 258 (502)
..+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+++........ .+
T Consensus 65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i 144 (369)
T 3zwl_B 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144 (369)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence 457888999999999999999999999999999999999887654332210 00
Q ss_pred eeEEEeee-------------cCccccCCC--CeEEEEECCCCCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEE
Q 010754 259 NVLVLKHV-------------KGRTNEKSK--DVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSL 321 (502)
Q Consensus 259 ~~~~~~~~-------------~~~~~~~~~--~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l 321 (502)
.+..+... ......+.. .+.+++|+|++++|++|+.||.|++||+.. .....+..|...|.++
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 00000000 000112222 899999999999999999999999999874 6677888899999999
Q ss_pred EEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-EEEEEeCCC--------------eEEEEEcC
Q 010754 322 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDN--------------MIYVCKIG 386 (502)
Q Consensus 322 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~--------------~i~i~d~~ 386 (502)
+|+|++++|++++.|+.|++||+++++.+..+. +...+..+.|++++ .+++++.++ .+++||..
T Consensus 225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred EECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 999999999999999999999999999888887 77889999997765 477777777 89999999
Q ss_pred CCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 387 ~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
+++++..+.+|...|++++|+|++++|++++.||.|+||++.++....
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 304 FEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred CCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 999999999999999999999999999999999999999998765443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=232.44 Aligned_cols=247 Identities=24% Similarity=0.467 Sum_probs=199.9
Q ss_pred eCCCceEEeccCC----CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE
Q 010754 203 IPNSDVTILEGHT----SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278 (502)
Q Consensus 203 ~~~~~~~~l~~H~----~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (502)
+|..+.++|.+-. --+..|+|+++ ++||+|. |++|+|||+.+++... .+ ....|...|+
T Consensus 89 i~~~p~~~l~ap~~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-------------~~--~~~~~~~~V~ 151 (420)
T 4gga_A 89 IPSLPDRILDAPEIRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-------------LL--QMEQPGEYIS 151 (420)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-------------EE--ECCSTTCCEE
T ss_pred cCCCCceEEECCCCcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-------------EE--EecCCCCcEE
Confidence 4444555555421 23678999975 5787775 8999999999876321 11 1234567899
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeec
Q 010754 279 TLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFH 356 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~ 356 (502)
+|+|+|+|++|++|+.||.|+|||+. +..+..+.+|...+.++.|+ +..|++|+.|+.+++||.... ..+..+..|
T Consensus 152 sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h 229 (420)
T 4gga_A 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGH 229 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccc
Confidence 99999999999999999999999976 56778889999999998875 579999999999999998764 456778889
Q ss_pred cCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCc----ceEEEecCCCcEEEEEEcCCCC-EEEE--EeCCCcEEEEECC
Q 010754 357 SGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGS-LLAS--CSDDVTAKIWNMK 428 (502)
Q Consensus 357 ~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~i~~l~~sp~g~-~las--~s~dg~i~iwd~~ 428 (502)
...+..+.|.+. ..+++++.|+.+++|+..+++ .+..+..|...|.+++|+|.+. ++++ |+.|++|+|||+.
T Consensus 230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 999999999765 568899999999999998765 4677888999999999999754 5555 4579999999999
Q ss_pred CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe--ecCceEEEEe
Q 010754 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR--LIPYFLYWIC 476 (502)
Q Consensus 429 ~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las--~~~~~~iw~~ 476 (502)
+++++..+..| ..+.++.|+|++. .+++++ .++.+++|+.
T Consensus 310 t~~~~~~~~~~-~~v~~~~~~~~~~-------~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 310 SGACLSAVDAH-SQVCSILWSPHYK-------ELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp TTEEEEEEECS-SCEEEEEEETTTT-------EEEEEECTTTCCEEEEET
T ss_pred ccccceeeccc-cceeeeeecCCCC-------eEEEEEecCCCEEEEEEC
Confidence 99999988755 5699999999998 677766 4688999963
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=265.80 Aligned_cols=250 Identities=10% Similarity=0.112 Sum_probs=200.3
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.|.||...|..++|+|++++||+|+.|++|++||+.++.... ...+..........+|...|++++|+|+|++|
T Consensus 430 ~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~------~~~~~~~l~~~~~~~h~~~V~svafspdg~~L 503 (902)
T 2oaj_A 430 LLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD------NASFEVNLSRTLNKAKELAVDKISFAAETLEL 503 (902)
T ss_dssp SCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT------TBCEEEEHHHHTTCSSSCCEEEEEEETTTTEE
T ss_pred cccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC------CceEEeechhhcCCCCCCceeEEEecCCCCeE
Confidence 477888888889999999999999999999999998874211 01111100000112677899999999999999
Q ss_pred EEEECCCeEEEEECCCc----------------------------------------------eEEEecCccCCeEEEEE
Q 010754 290 ATGSYDGQARIWSTNGD----------------------------------------------LKCTLSKHKGPIFSLKW 323 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~v~~l~~ 323 (502)
|+|+.||+|+||++.+. +...+.+|.+.|++++|
T Consensus 504 Asgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svaf 583 (902)
T 2oaj_A 504 AVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINN 583 (902)
T ss_dssp EEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEE
T ss_pred EEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEe
Confidence 99999999999997532 25677889999999999
Q ss_pred ecCCCEEEEEecCCeEEEEEcCCCceEEE-----Ee-eccCCeEEEEec-----CCC----EEEEEeCCCeEEEEEc---
Q 010754 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-----FE-FHSGPTLDVDWR-----NNV----SFATSSTDNMIYVCKI--- 385 (502)
Q Consensus 324 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-----~~-~~~~~v~~v~~~-----~~~----~~~~~~~d~~i~i~d~--- 385 (502)
+|+| +|++|+.|++|++||++++..+.. +. +|...|.+++|+ +++ .+++++.|++|++||+
T Consensus 584 SpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~ 662 (902)
T 2oaj_A 584 SNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPA 662 (902)
T ss_dssp CBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEEC
T ss_pred cCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecC
Confidence 9999 999999999999999988776542 22 678889999999 874 6999999999999999
Q ss_pred CCCcceEEEecCC-----CcEEEEE-Ec----------------------CCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 386 GENRPIKTFAGHQ-----GEVNCVK-WD----------------------PTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 386 ~~~~~~~~~~~h~-----~~i~~l~-~s----------------------p~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
.+++.+..+.+|. +.|..+. |+ +++.+|+++ +..||||++.++++.+...
T Consensus 663 ~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~ 740 (902)
T 2oaj_A 663 SGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF 740 (902)
T ss_dssp GGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC
T ss_pred CCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc
Confidence 7888888887774 6777776 65 455555554 6789999999999998887
Q ss_pred cCCCcEEEE---E------EccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 438 EHSKEIYTI---R------WSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 438 ~h~~~i~~v---~------~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.|...+.++ . |+++|. .|++.+.++.+++|.
T Consensus 741 ~~~~~~~~v~~~~~~~~~~~~~~~~-------~l~~~~~~g~i~~~s 780 (902)
T 2oaj_A 741 KYPLAATGLSYISTVEKNNDRKNLT-------VIITLEINGHLRVFT 780 (902)
T ss_dssp SSCEEEEEEEEEEEECSSSCEEEEE-------EEEEEETTSEEEEEE
T ss_pred ccceeeeEEEEEEeccccccccCce-------EEEEEeCCCcEEEEE
Confidence 777666776 5 677776 788888899999996
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=233.32 Aligned_cols=201 Identities=24% Similarity=0.393 Sum_probs=178.2
Q ss_pred cccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC---CceEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEc
Q 010754 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDV 344 (502)
Q Consensus 270 ~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~ 344 (502)
..+|...|++++|+|++++|++|+.||.|+||++. ......+..|..+|.+++|+++ +++|++++.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 45678899999999999999999999999999985 3455678899999999999977 899999999999999999
Q ss_pred CCCc--eEEEEeeccCCeEEEEecCC---CEEEEEeCCCeEEEEEcCCCc--ceEEEecCCCcEEEEEEcC---------
Q 010754 345 KTEE--WKQQFEFHSGPTLDVDWRNN---VSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDP--------- 408 (502)
Q Consensus 345 ~~~~--~~~~~~~~~~~v~~v~~~~~---~~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~i~~l~~sp--------- 408 (502)
.+++ .+..+..|...+.+++|+++ ..+++++.|+.|++||+.... ....+.+|...|++++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 9987 67777789999999999875 579999999999999998873 4556778999999999999
Q ss_pred ----CCCEEEEEeCCCcEEEEECCCCe----eEEEeccCCCcEEEEEEccC---CCCCCCCCccEEEEeecCceEEEEee
Q 010754 409 ----TGSLLASCSDDVTAKIWNMKQDK----YVHDLREHSKEIYTIRWSPT---GSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 409 ----~g~~las~s~dg~i~iwd~~~~~----~~~~~~~h~~~i~~v~~sp~---g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
++.+|++|+.||.|++||++++. ++..+.+|..+|++++|+|+ +. .+++++.|+.+++|...
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-------~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-------YLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-------EEEEEETTSCEEEEEES
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-------eEEEEeCCCEEEEEeCC
Confidence 69999999999999999997754 55677899999999999999 55 78888889999999754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=239.11 Aligned_cols=215 Identities=25% Similarity=0.459 Sum_probs=183.1
Q ss_pred CceEEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
..+..+.+|...|++++|+|++. +|++|+.||+|++|++.++..... . .........|...|.+++|+|
T Consensus 172 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~---~~~~~~~~~h~~~v~~v~~~p 241 (430)
T 2xyi_A 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR-------V---IDAKNIFTGHTAVVEDVAWHL 241 (430)
T ss_dssp CCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG-------E---EECSEEECCCSSCEEEEEECS
T ss_pred CCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-------e---eccceeecCCCCCEeeeEEeC
Confidence 45678899999999999999987 999999999999999987432110 0 001122335678899999999
Q ss_pred -CCCEEEEEECCCeEEEEECCC----ceEEEecCccCCeEEEEEecCCC-EEEEEecCCeEEEEEcCC-CceEEEEeecc
Q 010754 285 -EGTLLATGSYDGQARIWSTNG----DLKCTLSKHKGPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKT-EEWKQQFEFHS 357 (502)
Q Consensus 285 -~g~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~ 357 (502)
++.+|++++.||.|++||++. .....+..|...|.+++|+|++. .|++|+.||.|++||+++ +..+..+..|.
T Consensus 242 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~ 321 (430)
T 2xyi_A 242 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC
Confidence 778999999999999999874 35667778999999999999887 688999999999999998 56788888999
Q ss_pred CCeEEEEecCCC--EEEEEeCCCeEEEEEcCC--------------CcceEEEecCCCcEEEEEEcCCCC-EEEEEeCCC
Q 010754 358 GPTLDVDWRNNV--SFATSSTDNMIYVCKIGE--------------NRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDV 420 (502)
Q Consensus 358 ~~v~~v~~~~~~--~~~~~~~d~~i~i~d~~~--------------~~~~~~~~~h~~~i~~l~~sp~g~-~las~s~dg 420 (502)
..|.++.|++++ .|++++.|+.|++||+.. ...+..+.+|...|++++|+|++. +|++++.||
T Consensus 322 ~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg 401 (430)
T 2xyi_A 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence 999999998865 589999999999999987 356677888999999999999999 999999999
Q ss_pred cEEEEECCCC
Q 010754 421 TAKIWNMKQD 430 (502)
Q Consensus 421 ~i~iwd~~~~ 430 (502)
.|+||++...
T Consensus 402 ~i~iw~~~~~ 411 (430)
T 2xyi_A 402 IMQVWQMAEN 411 (430)
T ss_dssp EEEEEEECHH
T ss_pred CEEEeEcccc
Confidence 9999998653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=235.71 Aligned_cols=240 Identities=10% Similarity=0.044 Sum_probs=181.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CCCEEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLATG 292 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~s~ 292 (502)
...|.++.|+|+ +++|+.|++|++|+.............. . .......|...|.+++|+| +++++++|
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~----~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 145 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNK----V---LREIEVDSANEIIYMYGHNEVNTEYFIWA 145 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCC----E---EEEEECCCSSCEEEEECCC---CCEEEEE
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcc----e---eEEeecCCCCCEEEEEcCCCCCCCEEEEE
Confidence 567888899988 9999999999999876432111000000 0 1112234557899999999 99999999
Q ss_pred ECCCeEEEEECCCceE-EEe-cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceE-EEEee-ccCCeEEEEecCC
Q 010754 293 SYDGQARIWSTNGDLK-CTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWK-QQFEF-HSGPTLDVDWRNN 368 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~-~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~-~~~~v~~v~~~~~ 368 (502)
+.||.|++||++.... ... ..|...|.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |..+|.+++|+++
T Consensus 146 s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~ 225 (343)
T 3lrv_A 146 DNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADN 225 (343)
T ss_dssp ETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTT
T ss_pred eCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCC
Confidence 9999999999875443 333 345668999999999999999999999999999999887 78888 9999999999887
Q ss_pred CE-EEEEeCCCeEEEEEcCCCcceEEEec---CCCcEE--EEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeccCCC
Q 010754 369 VS-FATSSTDNMIYVCKIGENRPIKTFAG---HQGEVN--CVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 369 ~~-~~~~~~d~~i~i~d~~~~~~~~~~~~---h~~~i~--~l~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
+. +++++ ++.|++||+++.+.+..+.. |...+. +++|+|+|++|++++. |+.|+||++.+....... .
T Consensus 226 g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~ 300 (343)
T 3lrv_A 226 GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----D 300 (343)
T ss_dssp SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----E
T ss_pred CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----c
Confidence 65 56666 66999999999877655443 334444 6999999999999998 999999999765433332 5
Q ss_pred cEEEEEEcc---CCCCCCCCCccEEEEeecCceEEEEe
Q 010754 442 EIYTIRWSP---TGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 442 ~i~~v~~sp---~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++..++|+| ++. .+++++.++.+.++..
T Consensus 301 ~~~~~~~~~~~~~~~-------~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 301 EESALCLQSDTADFT-------DMDVVCGDGGIAAILK 331 (343)
T ss_dssp EEEECCC----CCCC-------EEEEEEETTEEEEEEE
T ss_pred CceeEecCccccccc-------eeEEEecCCceEEEEe
Confidence 688899998 555 7788888898888763
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=243.88 Aligned_cols=197 Identities=19% Similarity=0.244 Sum_probs=165.3
Q ss_pred cCCCCeEEEEECC-CCCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCC
Q 010754 272 EKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKT 346 (502)
Q Consensus 272 ~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~ 346 (502)
+|...|++|+|+| ++++||+|+.||.|+|||+... ....+.+|.+.|++|+|+| ++++|++|+.||+|++||+++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 4567799999999 5679999999999999997642 3445678999999999998 689999999999999999987
Q ss_pred CceEEEEeec--cCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEEeCCCcE
Q 010754 347 EEWKQQFEFH--SGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTA 422 (502)
Q Consensus 347 ~~~~~~~~~~--~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~s~dg~i 422 (502)
+........+ ...+.+++|+++ ..+++|+.||.|++||++. +.+..+.+|...|++++|+|++. +|++|+.|+.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v 275 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCccee
Confidence 6544333332 335678889765 5688999999999999864 56778889999999999999976 78899999999
Q ss_pred EEEECCCCeeEEEe---ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 423 KIWNMKQDKYVHDL---REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 423 ~iwd~~~~~~~~~~---~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+|||+++.+....+ .+|..+|++++|+|+|. .|++++.|+.+++|..
T Consensus 276 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-------~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGA-------RLLTTDQKSEIRVYSA 325 (435)
T ss_dssp CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSS-------EEEEEESSSCEEEEES
T ss_pred eEEecccccccceEEEeeeccccccceeECCCCC-------eeEEEcCCCEEEEEEC
Confidence 99999887654433 47999999999999998 8889999999999974
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-26 Score=227.76 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=197.4
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.+.+|.+.|.+++|+|++.++++++.|+.|++||+.+++.. ..+ ..+...+.+++|+|+++.+
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~-------------~~~----~~~~~~~~~~~~~~~~~~l 226 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK-------------ATV----DLTGKWSKILLYDPIRDLV 226 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE-------------EEE----ECSSSSEEEEEEETTTTEE
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE-------------EEE----cCCCCCeeEEEEcCCCCEE
Confidence 34689999999999999999999999999999999876532 111 1345679999999999988
Q ss_pred EEEE-CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe--------cCCeEEEEEcCCCceEEEEeeccCCe
Q 010754 290 ATGS-YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS--------CDKTAIVWDVKTEEWKQQFEFHSGPT 360 (502)
Q Consensus 290 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~v 360 (502)
++++ .++.|++||+..........+...+.+++|+|+++++++++ .|+.|++||+.+++.+..+ .+...+
T Consensus 227 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~ 305 (433)
T 3bws_A 227 YCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNK 305 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECE
T ss_pred EEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCc
Confidence 6555 78999999987544443334455699999999999999888 4889999999999877765 355588
Q ss_pred EEEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC---------------CCcEE
Q 010754 361 LDVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---------------DVTAK 423 (502)
Q Consensus 361 ~~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~---------------dg~i~ 423 (502)
..++|++++ .+++++.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|+
T Consensus 306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEE
Confidence 899998876 35667899999999999998888886 7788999999999999888876 57999
Q ss_pred EEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee-cCceEEEEe
Q 010754 424 IWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL-IPYFLYWIC 476 (502)
Q Consensus 424 iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~~ 476 (502)
+||+.+++.+..+.. ...+.+++|+|+|. .+++++. ++.+++|..
T Consensus 385 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~-------~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 385 VIDTTTDTVKEFWEA-GNQPTGLDVSPDNR-------YLVISDFLDHQIRVYRR 430 (433)
T ss_dssp EEETTTTEEEEEEEC-SSSEEEEEECTTSC-------EEEEEETTTTEEEEEEE
T ss_pred EEECCCCcEEEEecC-CCCCceEEEcCCCC-------EEEEEECCCCeEEEEEe
Confidence 999999999988875 45799999999998 6666654 888999975
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=221.10 Aligned_cols=211 Identities=15% Similarity=0.104 Sum_probs=152.1
Q ss_pred CCCceEEEEEcCC----CCeEEEEeCCCcEEEEecCCCCccCCC---CCCCceeEEEe---eecCccccCCCCeEEEEEC
Q 010754 214 HTSEVCACAWSPA----GSLLASGSGDSTARIWTIADGTSNGGA---QNGPLNVLVLK---HVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 214 H~~~V~~~~~~p~----~~~l~sgs~dg~v~iw~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~v~~l~~s 283 (502)
|...|.+++|+|+ +.++++++.+ +++|++.+++.+... ....+....+. ........|...++.++|+
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA 187 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence 3456778888888 7888887743 666777665543331 12222222220 1112233567788899999
Q ss_pred C---CCCEEEEEECCCeEEEEECC-CceEEEecCcc---CCeEEEEEecCCCEE------------EEEecCCeEEEEEc
Q 010754 284 G---EGTLLATGSYDGQARIWSTN-GDLKCTLSKHK---GPIFSLKWNKKGDYL------------LTGSCDKTAIVWDV 344 (502)
Q Consensus 284 ~---~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~---~~v~~l~~~~~~~~l------------~s~~~d~~i~~wd~ 344 (502)
+ ++.+|++|+.|++|+|||+. ++.+.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||.
T Consensus 188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET
T ss_pred ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 8 77999999999999999987 56777777543 467788999999876 56788999999999
Q ss_pred CCCceEEEEe-----eccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEE-EEEEcCCCCEEEEEeC
Q 010754 345 KTEEWKQQFE-----FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDPTGSLLASCSD 418 (502)
Q Consensus 345 ~~~~~~~~~~-----~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~-~l~~sp~g~~las~s~ 418 (502)
.+++.+..+. +|...+.+..+. +..+++++.|++|+|||+.+++.+.++.+|...+. +++|+|+|++|++|+.
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQK 346 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECT
T ss_pred CCCEEEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEEC
Confidence 9998877652 444445555544 55688999999999999999999999999987655 5899999999999999
Q ss_pred CCcEEEEEC
Q 010754 419 DVTAKIWNM 427 (502)
Q Consensus 419 dg~i~iwd~ 427 (502)
|++|+|||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-25 Score=219.90 Aligned_cols=240 Identities=13% Similarity=0.085 Sum_probs=192.7
Q ss_pred eEEeccCCCceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
+..+.+|. .+.+++|+|++++| ++++.|++|++||+.+++... .+. +...+.+++|+|++
T Consensus 25 ~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~-------------~~~-----~~~~v~~~~~spdg 85 (391)
T 1l0q_A 25 TATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA-------------TVP-----AGSSPQGVAVSPDG 85 (391)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE-------------EEE-----CSSSEEEEEECTTS
T ss_pred EEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE-------------EEE-----CCCCccceEECCCC
Confidence 45566665 48999999999876 677799999999998765321 111 12379999999999
Q ss_pred CEEEEEE-CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEE-EEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 287 TLLATGS-YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 287 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
++|++++ .++.|++||+..........+...+.+++|+|++++| ++++.++.|++||+.+++.+..+..+ ..+..+.
T Consensus 86 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~ 164 (391)
T 1l0q_A 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIA 164 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEE
Confidence 9886555 6699999998865444444455678999999999977 67888999999999999988887765 4568999
Q ss_pred ecCCCE-E-EEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCeeEEEeccC
Q 010754 365 WRNNVS-F-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS---DDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 365 ~~~~~~-~-~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s---~dg~i~iwd~~~~~~~~~~~~h 439 (502)
|++++. + ++++.++.|++||+.+++.+..+. +...+.+++|+|+|++|++++ .++.|++||+.+++.+..+..|
T Consensus 165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~ 243 (391)
T 1l0q_A 165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC
Confidence 988763 4 567788999999999998887776 566899999999999999888 6899999999999999888876
Q ss_pred CCcEEEEEEccCCCCCCCCCccEE-EEeecCceEEEEe
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLI-LARLIPYFLYWIC 476 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~-las~~~~~~iw~~ 476 (502)
. .+.+++|+|+|. .++ .++.++.+++|+.
T Consensus 244 ~-~~~~~~~s~dg~-------~l~~s~~~d~~v~v~d~ 273 (391)
T 1l0q_A 244 P-DPAGIAVTPDGK-------KVYVALSFXNTVSVIDT 273 (391)
T ss_dssp S-SEEEEEECTTSS-------EEEEEETTTTEEEEEET
T ss_pred C-CccEEEEccCCC-------EEEEEcCCCCEEEEEEC
Confidence 5 479999999997 553 3456788999974
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-25 Score=208.98 Aligned_cols=247 Identities=23% Similarity=0.438 Sum_probs=195.6
Q ss_pred eCCCceEEecc--CCC--ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE
Q 010754 203 IPNSDVTILEG--HTS--EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278 (502)
Q Consensus 203 ~~~~~~~~l~~--H~~--~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (502)
+|..+.++|.+ ..+ -+.+|+||+++ +||+|. |++|+|||+.+++... .+ ....|...|+
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~-------------~~--~~~~~~~~V~ 71 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQ-------------LL--QMEQPGEYIS 71 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEE-------------EE--ECCSTTCCEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEE-------------EE--EecCCCCeEE
Confidence 44455556643 222 25789999876 777764 8999999999876421 11 1234667899
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeec
Q 010754 279 TLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFH 356 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~ 356 (502)
+++|+|++++|++|+.||.|++|+++ ++....+.+|...+.++.+ ++..+++++.++.+++|+.... ..+..+..|
T Consensus 72 ~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (318)
T 4ggc_A 72 SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149 (318)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred EEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCc
Confidence 99999999999999999999999987 5667788899988877655 5679999999999999998765 456677889
Q ss_pred cCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCc----ceEEEecCCCcEEEEEEcCCCCE---EEEEeCCCcEEEEECC
Q 010754 357 SGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR----PIKTFAGHQGEVNCVKWDPTGSL---LASCSDDVTAKIWNMK 428 (502)
Q Consensus 357 ~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~----~~~~~~~h~~~i~~l~~sp~g~~---las~s~dg~i~iwd~~ 428 (502)
...+..+.+.+. ..+++++.|+.|++||+.+++ .......|.+.|.++.++|++.. +++++.++.|++||..
T Consensus 150 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 999999999664 568899999999999998765 34566678889999999997653 3466778999999999
Q ss_pred CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe--ecCceEEEEe
Q 010754 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR--LIPYFLYWIC 476 (502)
Q Consensus 429 ~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las--~~~~~~iw~~ 476 (502)
......... +...+..+.|+|++. .+++++ .++.+++|+.
T Consensus 230 ~~~~~~~~~-~~~~v~~~~~~~~~~-------~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 230 SGACLSAVD-AHSQVCSILWSPHYK-------ELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp TCCEEEEEE-CSSCEEEEEEETTTT-------EEEEEECTTTCCEEEEET
T ss_pred ccccccccc-ceeeeeeeeeccccc-------ceEEEEEcCCCEEEEEEC
Confidence 888776654 677899999999998 667766 4688999964
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=230.40 Aligned_cols=199 Identities=20% Similarity=0.378 Sum_probs=172.9
Q ss_pred ccCCCCeEEEEECC-CCCEEEEEECCCeEEEEECCCceE-EEe-------------cCccCCeEEEEEec-CCCEEEEEe
Q 010754 271 NEKSKDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLK-CTL-------------SKHKGPIFSLKWNK-KGDYLLTGS 334 (502)
Q Consensus 271 ~~~~~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~~-~~~-------------~~~~~~v~~l~~~~-~~~~l~s~~ 334 (502)
..|...|++++|+| ++++|++|+.||.|++||+..... ..+ ..|...|.+++|+| ++.+|++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 34788999999999 999999999999999999874321 111 25999999999999 778999999
Q ss_pred cCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC----CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCC
Q 010754 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN----VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTG 410 (502)
Q Consensus 335 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g 410 (502)
.||.|++||+.+++....+. +...+..+.|.+. ..+++++.++.|++||+.++..+..+.+|...|++++|+|++
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred CCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence 99999999999998888776 6778899998653 369999999999999999999999999999999999999999
Q ss_pred C-EEEEEeCCCcEEEEECCCCe-eEEEe---------------ccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEE
Q 010754 411 S-LLASCSDDVTAKIWNMKQDK-YVHDL---------------REHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLY 473 (502)
Q Consensus 411 ~-~las~s~dg~i~iwd~~~~~-~~~~~---------------~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~i 473 (502)
. +|++|+.||.|++||++++. ++..+ ..|...|++++|+|+|. .+++++.++.+++
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~v 271 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-------HLLTVGTDNRMRL 271 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-------EEEEEETTSCEEE
T ss_pred CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-------EEEEecCCCeEEE
Confidence 8 59999999999999998765 34444 57889999999999998 7888888999999
Q ss_pred EEee
Q 010754 474 WICS 477 (502)
Q Consensus 474 w~~~ 477 (502)
|...
T Consensus 272 wd~~ 275 (408)
T 4a11_B 272 WNSS 275 (408)
T ss_dssp EETT
T ss_pred EECC
Confidence 9753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=244.23 Aligned_cols=201 Identities=24% Similarity=0.392 Sum_probs=178.3
Q ss_pred cccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC---CceEEEecCccCCeEEEEEecC--CCEEEEEecCCeEEEEEc
Q 010754 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN---GDLKCTLSKHKGPIFSLKWNKK--GDYLLTGSCDKTAIVWDV 344 (502)
Q Consensus 270 ~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~v~~l~~~~~--~~~l~s~~~d~~i~~wd~ 344 (502)
..+|...|++++|+|+|++|++|+.||.|+|||+. ......+.+|.++|.+++|+|+ +++|++|+.||.|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 35678899999999999999999999999999975 3456678899999999999988 899999999999999999
Q ss_pred CCCc--eEEEEeeccCCeEEEEecCC---CEEEEEeCCCeEEEEEcCCC--cceEEEecCCCcEEEEEEcC---------
Q 010754 345 KTEE--WKQQFEFHSGPTLDVDWRNN---VSFATSSTDNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDP--------- 408 (502)
Q Consensus 345 ~~~~--~~~~~~~~~~~v~~v~~~~~---~~~~~~~~d~~i~i~d~~~~--~~~~~~~~h~~~i~~l~~sp--------- 408 (502)
.+++ ....+..|...|.++.|+++ ..+++++.||.|++||++++ .....+.+|...|++++|+|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 9987 67777889999999999874 67999999999999999887 34567788999999999999
Q ss_pred ----CCCEEEEEeCCCcEEEEECCCC----eeEEEeccCCCcEEEEEEccC---CCCCCCCCccEEEEeecCceEEEEee
Q 010754 409 ----TGSLLASCSDDVTAKIWNMKQD----KYVHDLREHSKEIYTIRWSPT---GSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 409 ----~g~~las~s~dg~i~iwd~~~~----~~~~~~~~h~~~i~~v~~sp~---g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
++.+|++|+.||.|++||++++ .++..+.+|..+|++++|+|+ |. .+++++.|+.+++|+..
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-------~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-------YLASVSQDRTCIIWTQD 237 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-------EEEEEESSSCEEEEEES
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-------EEEEEecCCEEEEecCC
Confidence 5899999999999999999877 667788899999999999999 65 78888889999999754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-27 Score=229.36 Aligned_cols=201 Identities=16% Similarity=0.152 Sum_probs=148.2
Q ss_pred EEeccCCCceEEEEEcC--------CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 209 TILEGHTSEVCACAWSP--------AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p--------~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
..+.||.+.|++++|+| ++++||+|+.|++|+|||+.++... .....|...|.++
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~-----------------~~~~~~~~~v~~v 192 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI-----------------LAGYPLSSPGISV 192 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE-----------------EEEEECSSCEEEE
T ss_pred cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee-----------------eeecCCCCCcEEE
Confidence 45789999999999998 7899999999999999999765421 1122356789999
Q ss_pred EECCCC-CEEEEEECCCeEEEEECCCceE--------------------------EEecCccCCeEEEEEe-cCCCEEEE
Q 010754 281 DWNGEG-TLLATGSYDGQARIWSTNGDLK--------------------------CTLSKHKGPIFSLKWN-KKGDYLLT 332 (502)
Q Consensus 281 ~~s~~g-~~l~s~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~v~~l~~~-~~~~~l~s 332 (502)
+|+|++ .+|++|+.||.|++||+..... ....+|...|.++.|+ |+++.|++
T Consensus 193 ~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s 272 (393)
T 4gq1_A 193 QFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA 272 (393)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE
T ss_pred EECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE
Confidence 999987 4899999999999999764211 1123577889999997 79999999
Q ss_pred EecCCeEEEEEcCCCceEEEEeeccCCeEEEEec--------------------CCCE-EEEEeCCCeEEEEEcCCCcce
Q 010754 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR--------------------NNVS-FATSSTDNMIYVCKIGENRPI 391 (502)
Q Consensus 333 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~--------------------~~~~-~~~~~~d~~i~i~d~~~~~~~ 391 (502)
++.|+++++||+.++.....+..+...+..+.+. .++. +++|+.||.|++||+.++..+
T Consensus 273 ~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 273 MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 9999999999998887766665554443333222 1333 456778999999999999999
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 392 ~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
..+.+|...|++++|+|+|++||+++.+| +.+|.+
T Consensus 353 ~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 353 SIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 98889999999999999999999999877 666654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-25 Score=214.10 Aligned_cols=199 Identities=22% Similarity=0.382 Sum_probs=168.1
Q ss_pred cccCCCCeEEEEECCC---CCEEEEEECCCeEEEEECCC--ceE-EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 270 TNEKSKDVTTLDWNGE---GTLLATGSYDGQARIWSTNG--DLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 270 ~~~~~~~v~~l~~s~~---g~~l~s~~~dg~i~iwd~~~--~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
..+|...|++++|+|+ |++|++|+.||.|++||+.. ... ..+..|...|.+++|+|++++|++++.||.|++||
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 3467889999999999 69999999999999999873 333 67888999999999999999999999999999999
Q ss_pred cCCCceEEEEeeccCCeEEEEe--cCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCC----------------------
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDW--RNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQ---------------------- 398 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~--~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~---------------------- 398 (502)
+.+++.+. +..|...|.++.| .+++ .+++++.|+.|++||+++++++..+..+.
T Consensus 115 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 193 (368)
T 3mmy_A 115 LSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLI 193 (368)
T ss_dssp TTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEE
T ss_pred cCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEE
Confidence 99988766 5669999999999 6665 48899999999999999998877776543
Q ss_pred -------------------CcEEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---eeEEEeccCCC-----------
Q 010754 399 -------------------GEVNCVKWDPTGSL----LASCSDDVTAKIWNMKQD---KYVHDLREHSK----------- 441 (502)
Q Consensus 399 -------------------~~i~~l~~sp~g~~----las~s~dg~i~iwd~~~~---~~~~~~~~h~~----------- 441 (502)
..+.++.+.++... +++|+.||.|++||++.. ..+..+.+|..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
T 3mmy_A 194 VYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273 (368)
T ss_dssp EEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred EEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence 23344455444433 999999999999999887 55677777776
Q ss_pred -cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 442 -EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 442 -~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+|++++|+|+|. .+++++.|+.+++|+.
T Consensus 274 ~~v~~~~~sp~~~-------~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 274 YAVNGIAFHPVHG-------TLATVGSDGRFSFWDK 302 (368)
T ss_dssp CCEEEEEECTTTC-------CEEEEETTSCEEEEET
T ss_pred cceEEEEEecCCC-------EEEEEccCCeEEEEEC
Confidence 799999999998 7888999999999974
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=216.15 Aligned_cols=245 Identities=12% Similarity=0.053 Sum_probs=196.0
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..+..+ ..+.+++|+|++.++++++.|+.|++||+.+++.... ........|...|.+++|++++++
T Consensus 117 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 117 SRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL------------SPPEKYKKKLGFVETISIPEHNEL 183 (433)
T ss_dssp EEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE------------CCCHHHHTTCCEEEEEEEGGGTEE
T ss_pred EEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee------------cCcccccccCCceeEEEEcCCCEE
Confidence 344444 4466999999878888888899999999988753210 011123456778999999999999
Q ss_pred EEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEE-ecCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
+++++.|+.|++||++. .....+..|...+.+++|+|++++++++ +.|+.|++||+++++.+..+..+ ..+.+++|+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEEC
T ss_pred EEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEc
Confidence 99999999999999875 5666777889999999999999988654 47999999999999888777654 458999998
Q ss_pred CCC-EEEEEe--------CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEe
Q 010754 367 NNV-SFATSS--------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 367 ~~~-~~~~~~--------~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~-las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
+++ .+++++ .|+.|++||+.+++.+..+. |...+.+++|+|+++. +++++.|+.|++||+.+++.+..+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe
Confidence 876 566666 48899999999988777663 6668999999999975 466788999999999999988887
Q ss_pred ccCCCcEEEEEEccCCCCCCCCCccEEEEee---------------cCceEEEEe
Q 010754 437 REHSKEIYTIRWSPTGSGTNNPNQQLILARL---------------IPYFLYWIC 476 (502)
Q Consensus 437 ~~h~~~i~~v~~sp~g~~~~~~~~~l~las~---------------~~~~~iw~~ 476 (502)
. +...+.+++|+|+|. .+++++. |+.+.+|+.
T Consensus 342 ~-~~~~~~~~~~s~dg~-------~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 342 P-VFDKPNTIALSPDGK-------YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp E-CSSSEEEEEECTTSS-------EEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred c-CCCCCCeEEEcCCCC-------EEEEEecCCCccccccccccccceEEEEEEC
Confidence 6 677899999999997 5555555 347888863
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-25 Score=213.78 Aligned_cols=228 Identities=15% Similarity=0.164 Sum_probs=175.2
Q ss_pred CceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 216 SEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
..+..++|.++++.+ ++|+.|++|++||+.+++.+. .+ .+...|.+++|+++. ++++ .
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~-------------~~-----~~~~~v~~v~~~~~~--~~~~-~ 117 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS-------------RI-----KVDAPVKDLFLSREF--IVVS-Y 117 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE-------------EE-----ECSSCEEEEEECSSE--EEEE-E
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE-------------EE-----ECCCceEEEEEcCCE--EEEE-E
Confidence 468889999988877 567788999999998875321 11 124579999999864 4444 3
Q ss_pred CCeEEEEECCCc--eEEEecCccCCeEEEEEecCCCEEEE--EecCCeEEEEEcCCCc----------------eEEEEe
Q 010754 295 DGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLT--GSCDKTAIVWDVKTEE----------------WKQQFE 354 (502)
Q Consensus 295 dg~i~iwd~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s--~~~d~~i~~wd~~~~~----------------~~~~~~ 354 (502)
++.|++||+... .+..+.. +...+++++ .++++ |+.||.|++||+.++. .+..+.
T Consensus 118 ~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~ 192 (355)
T 3vu4_A 118 GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK 192 (355)
T ss_dssp TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC
T ss_pred cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE
Confidence 789999998754 3333322 445566676 56665 5889999999998865 267888
Q ss_pred eccCCeEEEEecCCC-EEEEEeCCCe-EEEEEcCCCcceEEEe-c-CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 355 FHSGPTLDVDWRNNV-SFATSSTDNM-IYVCKIGENRPIKTFA-G-HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 355 ~~~~~v~~v~~~~~~-~~~~~~~d~~-i~i~d~~~~~~~~~~~-~-h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
.|...|.+++|++++ .+++++.|++ |++||+.+++.+.++. + |...|++++|+|+|++|++|+.|++|+|||+..+
T Consensus 193 ~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 193 AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999999999998865 5899999998 9999999999999998 5 9999999999999999999999999999999765
Q ss_pred eeE--EEec---------------------cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 431 KYV--HDLR---------------------EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 431 ~~~--~~~~---------------------~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
... ..+. .+..+...++|+|+|. .+++++.|+.+.+|..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-------~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 273 QDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-------LVVVWPHTRMIETFKV 334 (355)
T ss_dssp SCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-------EEEEETTTTEEEEEEE
T ss_pred CCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC-------EEEEEeCCCeEEEEEE
Confidence 311 1111 1122346799999998 7788888888888864
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-24 Score=210.11 Aligned_cols=228 Identities=15% Similarity=0.170 Sum_probs=183.5
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCeEEEEeCCC---cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDS---TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 204 ~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
.....+.+.+|...|.+++|+|+|++|++++.|+ .|++||+.+++.. . + ..+...+.++
T Consensus 167 ~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-----------~---l----~~~~~~~~~~ 228 (415)
T 2hqs_A 167 DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-----------Q---V----ASFPRHNGAP 228 (415)
T ss_dssp TSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----------E---E----ECCSSCEEEE
T ss_pred CCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-----------E---e----ecCCCcccCE
Confidence 3455678889999999999999999999999885 9999999876521 0 1 1234579999
Q ss_pred EECCCCCEEE-EEECCC--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CC--eEEEEEcCCCceEEEEe
Q 010754 281 DWNGEGTLLA-TGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DK--TAIVWDVKTEEWKQQFE 354 (502)
Q Consensus 281 ~~s~~g~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~ 354 (502)
+|+|+|+.|+ +++.+| .|++||+.+.....+..|...+.+++|+|+|++|++++. ++ .|++||+.+++. ..+.
T Consensus 229 ~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~ 307 (415)
T 2hqs_A 229 AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRIT 307 (415)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECC
T ss_pred EEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEe
Confidence 9999999888 666665 499999987777788889999999999999999998876 44 688889988764 3445
Q ss_pred eccCCeEEEEecCCCE-EEEEeCC---CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC---cEEEEEC
Q 010754 355 FHSGPTLDVDWRNNVS-FATSSTD---NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV---TAKIWNM 427 (502)
Q Consensus 355 ~~~~~v~~v~~~~~~~-~~~~~~d---~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg---~i~iwd~ 427 (502)
.+...+..+.|++++. +++++.+ ..|++||+.+++. ..+..+. .+.+++|+|+|++|++++.++ .|++||+
T Consensus 308 ~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 308 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 5667788999988765 5555543 5899999998876 4455554 899999999999999988876 7999998
Q ss_pred CCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
. +.....+..|.+.|.+++|+|.-.
T Consensus 386 ~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 386 D-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp T-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred C-CCcEEEeeCCCCCCcCCccccccc
Confidence 7 556778889999999999999743
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=204.31 Aligned_cols=220 Identities=10% Similarity=0.102 Sum_probs=177.2
Q ss_pred CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE-EEEECCCeEEEEECCC-
Q 010754 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGSYDGQARIWSTNG- 305 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~s~~~dg~i~iwd~~~- 305 (502)
.++++++.|+.|++||+.+++.. ..+. +...+.+++|+|+|+++ ++++.|+.|++||...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~-------------~~~~-----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~ 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT-------------ATIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE-------------EEEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred EEEEEcCCCCEEEEEECCCCeEE-------------EEee-----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC
Confidence 46889999999999999876532 1111 12358999999999977 5666899999999865
Q ss_pred ceEEEecCccCCeEEEEEecCCCEEEEE-ecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-E-EEEeCCCeEEE
Q 010754 306 DLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-F-ATSSTDNMIYV 382 (502)
Q Consensus 306 ~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~-~~~~~d~~i~i 382 (502)
.....+.. ...+.+++|+|++++|+++ +.++.|++||+.+++.+..+..+ ..+.+++|++++. + ++++.++.|++
T Consensus 65 ~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 65 NVIATVPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEEEC-CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 44444444 4489999999999988654 46799999999999988877654 4689999988754 4 67778999999
Q ss_pred EEcCCCcceEEEecCCCcEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCcc
Q 010754 383 CKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 383 ~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~l-as~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~ 461 (502)
||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+++++++..+. +...+.+++|+|+|. .
T Consensus 143 ~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~-------~ 213 (391)
T 1l0q_A 143 INTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT-------K 213 (391)
T ss_dssp EETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS-------E
T ss_pred EECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCC-------E
Confidence 999999998888865 457999999999987 677889999999999999888776 556799999999998 6
Q ss_pred EEEEe---ecCceEEEEe
Q 010754 462 LILAR---LIPYFLYWIC 476 (502)
Q Consensus 462 l~las---~~~~~~iw~~ 476 (502)
+++++ .++.+.+|+.
T Consensus 214 l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp EEEEEECSSCCEEEEEET
T ss_pred EEEEecCcCCCcEEEEEC
Confidence 67766 4688888863
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=207.61 Aligned_cols=241 Identities=12% Similarity=0.091 Sum_probs=186.2
Q ss_pred EEeccCCCceEEEEEcC--------------CCCeEEEEeCC------CcEEEEecCCCCccCCCCCCCceeEEEeeecC
Q 010754 209 TILEGHTSEVCACAWSP--------------AGSLLASGSGD------STARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p--------------~~~~l~sgs~d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (502)
..+.+|...+..+++++ .+..++.++.+ +.|++||+..... ..
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-----------~~------ 173 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-----------FV------ 173 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-----------EE------
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-----------EE------
Confidence 45788998888888775 25666666654 7999999875321 01
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEECCC---eEEEEECCCceEEEecCccCCeEEEEEecCCCEEE-EEecCCe--EEEE
Q 010754 269 RTNEKSKDVTTLDWNGEGTLLATGSYDG---QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKT--AIVW 342 (502)
Q Consensus 269 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~--i~~w 342 (502)
...|...|.+++|+|+|++|++++.++ .|++||+.+.....+..|...+.+++|+|+|++|+ +++.++. |++|
T Consensus 174 -l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~ 252 (415)
T 2hqs_A 174 -VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 252 (415)
T ss_dssp -EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred -EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence 112456799999999999999999885 99999998766667788888999999999999888 6666654 9999
Q ss_pred EcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeC-CC--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 010754 343 DVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSST-DN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 343 d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~-d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~ 418 (502)
|+.+++. ..+..+...+..+.|+|++. +++++. ++ .|++||+.+++. ..+..+...+.+++|+|+|++|++++.
T Consensus 253 d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 253 DLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp ETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEEC
Confidence 9998876 55667788899999998765 666665 44 688889888764 455567788999999999999998876
Q ss_pred C---CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC-ceEEEEeee
Q 010754 419 D---VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP-YFLYWICSI 478 (502)
Q Consensus 419 d---g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~-~~~iw~~~~ 478 (502)
+ +.|++||+.++++. .+..|. .+.+++|+|+|. .++.++.++ ...+|.+++
T Consensus 331 ~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~-------~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 331 NGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGT-------MVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp CSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSS-------EEEEEEEETTEEEEEEEET
T ss_pred cCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCC-------EEEEEEcCCCccEEEEEEC
Confidence 4 58999999988874 455554 899999999998 677777665 234554443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=195.31 Aligned_cols=242 Identities=16% Similarity=0.249 Sum_probs=183.1
Q ss_pred eCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCC-CCccCCCCCCCceeEEEeeecCccccCCCCeEEEE
Q 010754 203 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD-GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (502)
Q Consensus 203 ~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 281 (502)
+.......+..|...|.+++|+|++++|++++ ++.|++||+.+ ++..... ...+...+.+++
T Consensus 29 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~ 91 (297)
T 2ojh_A 29 IRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD----------------TGFATICNNDHG 91 (297)
T ss_dssp TTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC----------------CTTCCCBCSCCE
T ss_pred CCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec----------------cccccccccceE
Confidence 33445566778999999999999999999987 78999999987 6532110 011235688999
Q ss_pred ECCCCCEEEEEEC--CCeEEEE--ECCCceEEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCC-CceEEEEee
Q 010754 282 WNGEGTLLATGSY--DGQARIW--STNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKT-EEWKQQFEF 355 (502)
Q Consensus 282 ~s~~g~~l~s~~~--dg~i~iw--d~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~-~~~~~~~~~ 355 (502)
|+|+|++|++++. ++.+.|| +..+.....+..+. .+..++|+|++++|+ +++.++.+.+|++.. +.....+..
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc
Confidence 9999999999993 3445555 55555555554443 489999999999887 788899999998642 233455666
Q ss_pred ccCCeEEEEecCCCE-EEEEe-CCCeEEEEEcC-CCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-----------Cc
Q 010754 356 HSGPTLDVDWRNNVS-FATSS-TDNMIYVCKIG-ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-----------VT 421 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~-~~~~~-~d~~i~i~d~~-~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-----------g~ 421 (502)
+...+..+.|++++. +++++ .++.+.+|++. .+..+..+..|...+.+++|+|+|++|++++.+ +.
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 778899999988765 55554 58899999987 556677788888889999999999999988876 56
Q ss_pred EEEEECCCCee--EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC
Q 010754 422 AKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP 469 (502)
Q Consensus 422 i~iwd~~~~~~--~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~ 469 (502)
|++||+.+++. +..+.+|...+.+++|+|+|. .+++++.+.
T Consensus 251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------~l~~~~~~~ 293 (297)
T 2ojh_A 251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD-------EFAYVRYFP 293 (297)
T ss_dssp EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSS-------EEEEEEECC
T ss_pred EEEEecCCCCceeeeccCCCCcccccceECCCCC-------EEEEEEecc
Confidence 99999988765 444457888899999999998 666665543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-21 Score=184.09 Aligned_cols=241 Identities=12% Similarity=0.077 Sum_probs=172.7
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCC-CcEEEEecC--CCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGD-STARIWTIA--DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~d-g~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..|...+.+++|+|++++|++++.+ +.|++|++. ++.. ..+..... ...+..++|+|+|++
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~~~~~s~dg~~ 97 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-----------TFAAESAL-----PGSLTHISTDHQGQF 97 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-----------EEEEEEEC-----SSCCSEEEECTTSSE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-----------eecccccc-----CCCCcEEEEcCCCCE
Confidence 3577889999999999988888886 999999997 3321 11111111 126889999999998
Q ss_pred EEEEEC-CCeEEEEECC---C-ceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCC-CceEE----EEee-c
Q 010754 289 LATGSY-DGQARIWSTN---G-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT-EEWKQ----QFEF-H 356 (502)
Q Consensus 289 l~s~~~-dg~i~iwd~~---~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~-~~~~~----~~~~-~ 356 (502)
|++++. ++.|.+||+. . .....+. ....+.+++|+|+++++++++ .++.|.+||+.+ ++... .+.. .
T Consensus 98 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 176 (343)
T 1ri6_A 98 VFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE 176 (343)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST
T ss_pred EEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC
Confidence 877765 7899999983 2 2223333 344688999999999888877 899999999987 65433 2222 2
Q ss_pred cCCeEEEEecCCCE-EE-EEeCCCeEEEEEcCC--Ccc--eEEEe----cC--CCcEEEEEEcCCCCEEE-EEeCCCcEE
Q 010754 357 SGPTLDVDWRNNVS-FA-TSSTDNMIYVCKIGE--NRP--IKTFA----GH--QGEVNCVKWDPTGSLLA-SCSDDVTAK 423 (502)
Q Consensus 357 ~~~v~~v~~~~~~~-~~-~~~~d~~i~i~d~~~--~~~--~~~~~----~h--~~~i~~l~~sp~g~~la-s~s~dg~i~ 423 (502)
...+..+.|++++. ++ ++..++.|.+|++.. +.. ...+. ++ ...+..++|+|+|++|+ ++..++.|+
T Consensus 177 ~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~ 256 (343)
T 1ri6_A 177 GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLIT 256 (343)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEE
Confidence 34688899988765 44 444889999999954 332 22332 11 23577899999998877 455799999
Q ss_pred EEECC----CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEee
Q 010754 424 IWNMK----QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWICS 477 (502)
Q Consensus 424 iwd~~----~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~~ 477 (502)
+||+. +.+.+..+..+.. +.+++|+|+|. .+++++ .++.+.+|..+
T Consensus 257 v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~-------~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 257 VFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGK-------YLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEECTTSCCEEEEEEEECSSS-CCCEEECTTSS-------EEEEECTTTCEEEEEEEE
T ss_pred EEEEcCCCCceEEeeeecCCCc-cceEEECCCCC-------EEEEecCCCCeEEEEEEc
Confidence 99998 3345555554544 88999999998 666666 46889999654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-22 Score=212.95 Aligned_cols=253 Identities=14% Similarity=0.094 Sum_probs=184.3
Q ss_pred CCceEEEEEcCCCCeEEEEeC-CC-----cEEEEecCCCCccCCCCCCCce----eEEEee-ecCcc--ccCCCCeEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLN----VLVLKH-VKGRT--NEKSKDVTTLD 281 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~-dg-----~v~iw~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~--~~~~~~v~~l~ 281 (502)
...|.+++|+|||++|++++. |+ .|++||+.+++........... .+.... ..... ......|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 356899999999999999998 88 8999999887532111100000 000000 00000 00002378999
Q ss_pred ECCCCCEEEEEECCCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC
Q 010754 282 WNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358 (502)
Q Consensus 282 ~s~~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 358 (502)
|+|||++|++++. +.|++||+.+. ....+..|...+.+++|+|+|++|++++ ++.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999987 99999999876 6677788888999999999999999887 56999999998876654433332
Q ss_pred C----------------eEEEEecCCCE-EEEEeCCC---------------------------------eEEEEEcCC-
Q 010754 359 P----------------TLDVDWRNNVS-FATSSTDN---------------------------------MIYVCKIGE- 387 (502)
Q Consensus 359 ~----------------v~~v~~~~~~~-~~~~~~d~---------------------------------~i~i~d~~~- 387 (502)
. +..+.|+|++. +++++.|+ .|++||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 36789988765 66666554 789999988
Q ss_pred CcceEEEe--cCCCcEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeeEEEeccCCC----cEEEEEEccCCCCCC
Q 010754 388 NRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD-----DVTAKIWNMKQDKYVHDLREHSK----EIYTIRWSPTGSGTN 456 (502)
Q Consensus 388 ~~~~~~~~--~h~~~i~~l~~sp~g~~las~s~-----dg~i~iwd~~~~~~~~~~~~h~~----~i~~v~~sp~g~~~~ 456 (502)
++...... .|...+..++| |||++|++++. +..|++||+.++++...+..+.. .+.+++|+|||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~--- 349 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS--- 349 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC---
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe---
Confidence 77654443 37788999999 99999987764 56799999999988777665543 456899999997
Q ss_pred CCCccEEEEeecCceEEEEee
Q 010754 457 NPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 457 ~~~~~l~las~~~~~~iw~~~ 477 (502)
.+++++.++...+|.++
T Consensus 350 ----~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 350 ----ILWSSERTGFQHLYRID 366 (741)
T ss_dssp ----EEEEECTTSSCEEEEEC
T ss_pred ----EEEEecCCCccEEEEEc
Confidence 55556666778888765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=192.36 Aligned_cols=212 Identities=13% Similarity=0.106 Sum_probs=159.0
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE----
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA---- 290 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~---- 290 (502)
...+..+++++++.++++++.|+ +++|+.................. .........+...|++++|+|+|++|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIV--DKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEE--ECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccccc--ccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 34588999999999999999988 99988643211100001000110 001111123456799999999999999
Q ss_pred EEECCCeEEEEECCCc------------eEEEecCccCCeEEEEEecC-CCEEEEEecCCeEEEEEcCCCceEEEEeecc
Q 010754 291 TGSYDGQARIWSTNGD------------LKCTLSKHKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~------------~~~~~~~~~~~v~~l~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
+|+.|+.|+|||+... ....+.+|...|.+++|+|+ +++|++++.||+|++||++++........|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 7888999999996532 14556679999999999997 7899999999999999999997777777788
Q ss_pred CCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCC-------CcEEEEEEcCCCCEEEEE-eCCC------cE
Q 010754 358 GPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQ-------GEVNCVKWDPTGSLLASC-SDDV------TA 422 (502)
Q Consensus 358 ~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-------~~i~~l~~sp~g~~las~-s~dg------~i 422 (502)
..+.+++|++++ .|++|+.||.|++||++ +.....+..|. ..|.+++|++++.++++. +.|| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 999999998754 68999999999999998 55566665442 379999999998887553 3443 38
Q ss_pred EEEECCCC
Q 010754 423 KIWNMKQD 430 (502)
Q Consensus 423 ~iwd~~~~ 430 (502)
++|++++.
T Consensus 272 ~i~~l~~~ 279 (434)
T 2oit_A 272 VMALLPKK 279 (434)
T ss_dssp EEEECCCT
T ss_pred EEEEeccC
Confidence 99999764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=177.76 Aligned_cols=245 Identities=10% Similarity=0.034 Sum_probs=171.1
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
+..+..+...+ +++|+|++++|++++. ++.|.+||+.+++.. . ... ..+.....+++|+|+|
T Consensus 33 ~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~---------~---~~~----~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 33 LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK---------V---VAI----QEGQSSMADVDITPDD 95 (331)
T ss_dssp EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE---------E---EEE----EECSSCCCCEEECTTS
T ss_pred eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee---------E---Eec----ccCCCCccceEECCCC
Confidence 34445556667 9999999996666655 899999999876530 0 111 1122334449999999
Q ss_pred CEEEEEECCC---eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecCCe-EEEEEcCCCceEE----EEeecc
Q 010754 287 TLLATGSYDG---QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKT-AIVWDVKTEEWKQ----QFEFHS 357 (502)
Q Consensus 287 ~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~-i~~wd~~~~~~~~----~~~~~~ 357 (502)
++++++..++ .|.+||+................+++|+|+|++++++ ..++. |.+|++.....+. ......
T Consensus 96 ~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~ 175 (331)
T 3u4y_A 96 QFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG 175 (331)
T ss_dssp SEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred CEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence 9999555553 8999998754443333344557999999999866655 45578 9999987544331 122234
Q ss_pred CCeEEEEecCCCE-E-EEEeCCCeEEEEEcCCCcc---eEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe
Q 010754 358 GPTLDVDWRNNVS-F-ATSSTDNMIYVCKIGENRP---IKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDK 431 (502)
Q Consensus 358 ~~v~~v~~~~~~~-~-~~~~~d~~i~i~d~~~~~~---~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~ 431 (502)
.....+.|++++. + +++..++.|.+||+.+++. +..+.. ...+..++|+|+|++|+.++ .++.|.+||+.+++
T Consensus 176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence 5678999988774 4 4455689999999999888 777774 46678999999999776655 57889999999988
Q ss_pred e--EEEeccC----CCc---EEEEEEccCCCCCCCCCccEEEEeec-CceEEEEee
Q 010754 432 Y--VHDLREH----SKE---IYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWICS 477 (502)
Q Consensus 432 ~--~~~~~~h----~~~---i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~~~ 477 (502)
. +..+..+ ..+ +..++|+|+|. .+++++.+ +.+.+|...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 255 LSFVKSFGHGLLIDPRPLFGANQMALNKTET-------KLFISANISRELKVFTIS 303 (331)
T ss_dssp EEEEEEEECCCCCCCGGGTTCCCEEECTTSS-------EEEEEETTTTEEEEEETT
T ss_pred eeeecccccccccCCCCcccccceEECCCCC-------EEEEecCCCCcEEEEEec
Confidence 7 4333322 222 35689999998 66666554 578888754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=190.68 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=144.1
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCC-----------ceEE-----EecCccCCeEEEEEecCCCEEE----EEe
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG-----------DLKC-----TLSKHKGPIFSLKWNKKGDYLL----TGS 334 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-----------~~~~-----~~~~~~~~v~~l~~~~~~~~l~----s~~ 334 (502)
..+..+++++++.++++++.+| +++|+... .... ....+...|.+++|+|++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3578999999999999999888 88887421 0111 1123567899999999999999 788
Q ss_pred cCCeEEEEEcCCC--------ce---EEEEeeccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcE
Q 010754 335 CDKTAIVWDVKTE--------EW---KQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401 (502)
Q Consensus 335 ~d~~i~~wd~~~~--------~~---~~~~~~~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i 401 (502)
.|++|++||+.++ +. +..+.+|...|.+++|+|. ..|++++.||+|++||++++..+....+|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 8999999998764 22 3445568899999999875 579999999999999999987777777899999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC-------CCcEEEEEEccCCC
Q 010754 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-------SKEIYTIRWSPTGS 453 (502)
Q Consensus 402 ~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h-------~~~i~~v~~sp~g~ 453 (502)
++++|+|+|++|++|+.||.|++||++ ++....+..| ...|.+++|++++.
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 999999999999999999999999998 5555555433 23799999999875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.4e-20 Score=188.40 Aligned_cols=241 Identities=15% Similarity=0.160 Sum_probs=183.1
Q ss_pred ceEEec-cCCCceEEEEEcCCCCeEEEEeCCCcEEEEec--CCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 207 DVTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTI--ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 207 ~~~~l~-~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
.+..+. +|. +.+++|+|+|++|++++.|++|++||+ .+++.+ ..+. +...+..++|+
T Consensus 171 ~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~-------------~~i~-----~g~~p~~va~s 230 (543)
T 1nir_A 171 IVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV-------------AEIK-----IGIEARSVESS 230 (543)
T ss_dssp EEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE-------------EEEE-----CCSEEEEEEEC
T ss_pred EEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE-------------EEEe-----cCCCcceEEeC
Confidence 356666 444 899999999999999999999999999 554321 1111 13458999999
Q ss_pred C----CCCEEEEEEC-CCeEEEEECCC-ceEEEecC----------ccC-CeEEEEEecCCCE-EEEEecCCeEEEEEcC
Q 010754 284 G----EGTLLATGSY-DGQARIWSTNG-DLKCTLSK----------HKG-PIFSLKWNKKGDY-LLTGSCDKTAIVWDVK 345 (502)
Q Consensus 284 ~----~g~~l~s~~~-dg~i~iwd~~~-~~~~~~~~----------~~~-~v~~l~~~~~~~~-l~s~~~d~~i~~wd~~ 345 (502)
| +|+++++++. ++.|.+||... ..+..+.. |.. .+.++.++|++.. +++...++.|.+||+.
T Consensus 231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 231 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 9 9999999985 89999999764 44444443 223 6889999997765 5566778999999998
Q ss_pred CCceEE--EEeeccCCeEEEEecCCCE-EE-EEeCCCeEEEEEcCCCcceEEEec----CCCcEEEEEEcCC-CCEEEEE
Q 010754 346 TEEWKQ--QFEFHSGPTLDVDWRNNVS-FA-TSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPT-GSLLASC 416 (502)
Q Consensus 346 ~~~~~~--~~~~~~~~v~~v~~~~~~~-~~-~~~~d~~i~i~d~~~~~~~~~~~~----h~~~i~~l~~sp~-g~~las~ 416 (502)
+.+.+. .+ .+...+.++.|++++. ++ ++..+++|.+||..+++.+.++.. |.+....+ ++|+ |.+++++
T Consensus 311 ~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~ 388 (543)
T 1nir_A 311 DIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS 388 (543)
T ss_dssp TSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred CCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence 876544 33 3556678899988765 44 445689999999999999888874 54444333 5777 6677777
Q ss_pred e-CCCcEEEEECCC-------CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe-------ecCceEEEEe
Q 010754 417 S-DDVTAKIWNMKQ-------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR-------LIPYFLYWIC 476 (502)
Q Consensus 417 s-~dg~i~iwd~~~-------~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-------~~~~~~iw~~ 476 (502)
+ .|++|.+||+.+ +++++++.+|...+..|+|||+|+ .|.+++ .+..+.+|+.
T Consensus 389 ~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~-------~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS-------HLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCC-------EEEECCTTCSSHHHHTCEEEEET
T ss_pred cCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCC-------cEEEecCCCCCcccCceEEEEEC
Confidence 6 689999999998 899999999998899999999998 555554 2668888864
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-20 Score=196.98 Aligned_cols=232 Identities=9% Similarity=0.066 Sum_probs=176.8
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCC---CccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADG---TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
.|.+++|+|||++|++++. +.|++||+.++ ... ....+...+.+++|+|||++|++++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~------------------~l~~~~~~~~~~~~SPDG~~la~~~ 170 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR------------------QLTHGEGFATDAKLSPKGGFVSFIR 170 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC------------------BCCCSSSCEEEEEECTTSSEEEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE------------------EcccCCcccccccCCCCCCEEEEEe
Confidence 4889999999999999987 99999999876 321 1122345699999999999999988
Q ss_pred CCCeEEEEECCCceEEEecC-ccCC----------------eEEEEEecCCCEEEEEecCC-------------------
Q 010754 294 YDGQARIWSTNGDLKCTLSK-HKGP----------------IFSLKWNKKGDYLLTGSCDK------------------- 337 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~-~~~~----------------v~~l~~~~~~~~l~s~~~d~------------------- 337 (502)
++.|++||+.+.....+.. +... +.++.|+|+|++|++++.|+
T Consensus 171 -~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 -GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp -TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred -CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 4699999988655544432 3222 47899999999999988776
Q ss_pred --------------eEEEEEcCC-CceEEEEe--eccCCeEEEEecCCCE-EEEEe-----CCCeEEEEEcCCCcceEEE
Q 010754 338 --------------TAIVWDVKT-EEWKQQFE--FHSGPTLDVDWRNNVS-FATSS-----TDNMIYVCKIGENRPIKTF 394 (502)
Q Consensus 338 --------------~i~~wd~~~-~~~~~~~~--~~~~~v~~v~~~~~~~-~~~~~-----~d~~i~i~d~~~~~~~~~~ 394 (502)
.|++||+.+ ++...... .+...+..+.| +++. +++++ .+..|++||+.+++....+
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 899999988 87654432 25667899999 8755 55443 2568999999999887777
Q ss_pred ecCCC----cEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeccCCCcEEEE-EEccCCCCCCCCCccEEEEeec
Q 010754 395 AGHQG----EVNCVKWDPTGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYTI-RWSPTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 395 ~~h~~----~i~~l~~sp~g~~las~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~v-~~sp~g~~~~~~~~~l~las~~ 468 (502)
..+.. .+..++|+|+|+++++++.||.++||.+. .++ ...+..|...|.++ .|+|+|. .++..+.+
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~-------~l~~~~~~ 400 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAG-------LAYFRAGI 400 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTT-------EEEEEECS
T ss_pred EcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCC-------EEEEEEeC
Confidence 66543 45689999999999999999988888765 445 77888888889887 5999997 55444443
Q ss_pred -C--ceEEEEee
Q 010754 469 -P--YFLYWICS 477 (502)
Q Consensus 469 -~--~~~iw~~~ 477 (502)
+ .+++|...
T Consensus 401 ~~~~~~~l~~~~ 412 (741)
T 2ecf_A 401 ESARESQIYAVP 412 (741)
T ss_dssp SCTTCBEEEEEE
T ss_pred CCCceEEEEEEE
Confidence 3 68888754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-20 Score=193.38 Aligned_cols=260 Identities=17% Similarity=0.147 Sum_probs=182.0
Q ss_pred eCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCC-----CCccCCCCCCCceeEEEeeecCccccCCCCe
Q 010754 203 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIAD-----GTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277 (502)
Q Consensus 203 ~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (502)
+.......+..|...+.+++|+|+|++|+++ .|+.|++|++.+ ++...........+. .... ....+...+
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~--~g~~-~~~ee~~~~ 183 (706)
T 2z3z_A 108 MLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV--YGQA-VHQREFGIE 183 (706)
T ss_dssp TTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE--ESSC-CGGGCTTCC
T ss_pred CCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE--cccc-hhhhhcCCC
Confidence 3444556667788889999999999999995 679999999987 553221111110000 0000 011122346
Q ss_pred EEEEECCCCCEEEEEE---------------------------------CCCeEEEEECCCceEEEec---CccCCeEEE
Q 010754 278 TTLDWNGEGTLLATGS---------------------------------YDGQARIWSTNGDLKCTLS---KHKGPIFSL 321 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~---~~~~~v~~l 321 (502)
.+++|+|||++|++++ .+..|++||+.+.....+. .|...+.++
T Consensus 184 ~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 263 (706)
T 2z3z_A 184 KGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNL 263 (706)
T ss_dssp CSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEE
T ss_pred ceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeE
Confidence 8999999999999998 4468999998876544433 466779999
Q ss_pred EEecCCCEEEEEecCC-----eEEEEEcCCCceEEEEe-ec-cC---CeEEEEecC--CCE-EEEEeCCCeEEEEEcC-C
Q 010754 322 KWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQFE-FH-SG---PTLDVDWRN--NVS-FATSSTDNMIYVCKIG-E 387 (502)
Q Consensus 322 ~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~-~~-~~---~v~~v~~~~--~~~-~~~~~~d~~i~i~d~~-~ 387 (502)
+|+|+|++|++++.++ .|++||+.+++....+. .. .. .+..+.|++ ++. ++++..++.+++|.+. +
T Consensus 264 ~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~ 343 (706)
T 2z3z_A 264 SWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT 343 (706)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT
T ss_pred EEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC
Confidence 9999999999988776 99999999984333332 22 21 235688988 765 5566678888899886 5
Q ss_pred CcceEEEecCCCcEEE-EEEcCCCCEEEEEeC-CC----cEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCcc
Q 010754 388 NRPIKTFAGHQGEVNC-VKWDPTGSLLASCSD-DV----TAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 388 ~~~~~~~~~h~~~i~~-l~~sp~g~~las~s~-dg----~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~ 461 (502)
+..+..+..|...+.. ++|+|+|+.|+.++. ++ .|+.||+.+++ ...+. |...+.+++|||||+ .
T Consensus 344 ~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~-------~ 414 (706)
T 2z3z_A 344 GRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGS-------A 414 (706)
T ss_dssp SCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSS-------E
T ss_pred CCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCC-------E
Confidence 6677788888888877 799999998766554 44 67777877766 34444 667799999999998 5
Q ss_pred EEEEeecC----ceEEEE
Q 010754 462 LILARLIP----YFLYWI 475 (502)
Q Consensus 462 l~las~~~----~~~iw~ 475 (502)
+++++.+. .+.+|.
T Consensus 415 l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 415 IIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EEEEEECSSCSCEEEEEE
T ss_pred EEEEecCCCCCcEEEEEE
Confidence 55554443 366664
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=203.93 Aligned_cols=237 Identities=10% Similarity=0.120 Sum_probs=174.0
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC--
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-- 295 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d-- 295 (502)
+.+++|+|+|+++++ +.||+|++||+.+++... . ...+ ......|.+++|||||++|++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~----------~---~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~ 83 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV----------L---IEGK-KIESLRAIRYEISPDREYALFSYNVEP 83 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE----------E---ECTT-TTTTTTCSEEEECTTSSEEEEEESCCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE----------E---eccc-cccccccceEEECCCCCEEEEEecCcc
Confidence 567899999998776 789999999998875321 0 1110 0011248999999999999999864
Q ss_pred -------CeEEEEECCCceEEEecC---ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCe-----
Q 010754 296 -------GQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT----- 360 (502)
Q Consensus 296 -------g~i~iwd~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v----- 360 (502)
+.|.+||+.+.....+.. |...+..++|+|+|+.|+.++. +.|++||+.+++..+....+...+
T Consensus 84 ~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 84 IYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp CSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEE
T ss_pred ceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcc
Confidence 788899988655444443 4445889999999999998876 799999999988776655444333
Q ss_pred -------------EEEEecCCCE-EEEEeCCC----------------------------------eEEEEEcCCCcceE
Q 010754 361 -------------LDVDWRNNVS-FATSSTDN----------------------------------MIYVCKIGENRPIK 392 (502)
Q Consensus 361 -------------~~v~~~~~~~-~~~~~~d~----------------------------------~i~i~d~~~~~~~~ 392 (502)
..+.|+|++. |++++.++ .|++||+.+++...
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~ 242 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL 242 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE
T ss_pred cceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE
Confidence 7899998765 66665432 79999999888666
Q ss_pred EEecC------CCcEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeeEEEecc-CCCcEE----EEEEccCCCCCCC
Q 010754 393 TFAGH------QGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDKYVHDLRE-HSKEIY----TIRWSPTGSGTNN 457 (502)
Q Consensus 393 ~~~~h------~~~i~~l~~sp~g~~las~s~----dg~i~iwd~~~~~~~~~~~~-h~~~i~----~v~~sp~g~~~~~ 457 (502)
.+..+ ...+..++|+|||++|++.+. +..|++||+.++++...+.. +...+. .++|||||+
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~---- 318 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR---- 318 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC----
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCC----
Confidence 66654 567999999999999877653 35799999999987766543 334443 789999998
Q ss_pred CCccEEEEee--cC----ceEEEEee
Q 010754 458 PNQQLILARL--IP----YFLYWICS 477 (502)
Q Consensus 458 ~~~~l~las~--~~----~~~iw~~~ 477 (502)
.++.++. ++ ...+|.++
T Consensus 319 ---~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 319 ---KFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp ---SEEEEEEECCSSSSCEEEEEEEC
T ss_pred ---eEEEEEecccCCCcceeEEEEEe
Confidence 5665422 34 45666655
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-19 Score=169.37 Aligned_cols=235 Identities=11% Similarity=0.075 Sum_probs=175.0
Q ss_pred CceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-
Q 010754 216 SEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS- 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~- 293 (502)
..+..++|+|+|+++ +++..++.|.+||+.+++....+..+ ............+.+++|+|+|+++++++
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 160 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLD--------DRKRTEEVRPLQPRELVADDATNTVYISGI 160 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESC--------CCCCCSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecC--------CCccccccCCCCCceEEECCCCCEEEEEec
Confidence 447889999999854 55556799999999887632211000 00000000112378899999999888776
Q ss_pred -CCCeEEEEECCCc-eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee----ccCCeEEEEecC
Q 010754 294 -YDGQARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF----HSGPTLDVDWRN 367 (502)
Q Consensus 294 -~dg~i~iwd~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~v~~~~ 367 (502)
.++.|.+||.... ....+..+...+.+++|+|+++++++++.++.|.+||+.+++....+.. +...+..++|++
T Consensus 161 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 161 GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 4789999998754 4445554666688999999999999999999999999999998887765 344577899987
Q ss_pred CCE-EEEE-eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEeccCCCcEE
Q 010754 368 NVS-FATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREHSKEIY 444 (502)
Q Consensus 368 ~~~-~~~~-~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~h~~~i~ 444 (502)
++. ++++ ..++.|.+||..+++.+..+..... .+++|+|+|++++.++ .++.|.+||..+++.+..+... ..+.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~ 317 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPN 317 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCC
Confidence 653 4444 4569999999999998888875442 5799999999665555 6899999999999998888744 4689
Q ss_pred EEEEccCCCCCCCCCccEEEEeec
Q 010754 445 TIRWSPTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 445 ~v~~sp~g~~~~~~~~~l~las~~ 468 (502)
+++|+|+|. .++++...
T Consensus 318 ~~~~s~dg~-------~l~v~~~~ 334 (353)
T 3vgz_A 318 SLALSADGK-------TLYVSVKQ 334 (353)
T ss_dssp EEEECTTSC-------EEEEEEEC
T ss_pred eEEEcCCCC-------EEEEEEcc
Confidence 999999998 56666554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=184.54 Aligned_cols=255 Identities=14% Similarity=0.102 Sum_probs=185.2
Q ss_pred eEEeccCCCceEEEEEcC----CCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 208 VTILEGHTSEVCACAWSP----AGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p----~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
+..+. +...+..++|+| +|++|++++. +++|.+||..+.+.+..+.... .............+.++.+
T Consensus 215 ~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g------~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 215 VAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG------MTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp EEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCE------ECSSSCCEESCCCEEEEEE
T ss_pred EEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccC------cccCccccccCCceEEEEE
Confidence 44555 445679999999 9999999884 8999999988766432111000 0000000012336899999
Q ss_pred CCCCCE-EEEEECCCeEEEEECCCc--eEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEEEEee---
Q 010754 283 NGEGTL-LATGSYDGQARIWSTNGD--LKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEF--- 355 (502)
Q Consensus 283 s~~g~~-l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~--- 355 (502)
+|++.. +++...++.|.+||.... .......+...+.++.|+|+|++|++++ .+++|.+||+.+++++..+..
T Consensus 288 s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ 367 (543)
T 1nir_A 288 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT 367 (543)
T ss_dssp CSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred CCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence 997765 556667899999997642 2212223556788999999999877655 589999999999999888875
Q ss_pred -ccCCeEEEEecCCCE-EEEEe-CCCeEEEEEcCC-------CcceEEEecCCCcEEEEEEcCCCCEEEEEe-------C
Q 010754 356 -HSGPTLDVDWRNNVS-FATSS-TDNMIYVCKIGE-------NRPIKTFAGHQGEVNCVKWDPTGSLLASCS-------D 418 (502)
Q Consensus 356 -~~~~v~~v~~~~~~~-~~~~~-~d~~i~i~d~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~las~s-------~ 418 (502)
|.+....+...+.+. ++++. .|++|.+||+.+ .+.++++.+|.+.+..|+++|+|++|++++ .
T Consensus 368 ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 368 PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 443344443233244 55554 589999999998 889999999998889999999999999987 2
Q ss_pred CCcEEEEECCCCeeE-EEe--------ccCCCcEEEEEEccCCCCCCCCCccEEEEee-----cCceEEEEe
Q 010754 419 DVTAKIWNMKQDKYV-HDL--------REHSKEIYTIRWSPTGSGTNNPNQQLILARL-----IPYFLYWIC 476 (502)
Q Consensus 419 dg~i~iwd~~~~~~~-~~~--------~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-----~~~~~iw~~ 476 (502)
+++|.|||+.+++.. ..+ ..+...+..++|+|+|. .++++.. ++.+.+|+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-------~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD-------EVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS-------EEEEEEECCTTSCCEEEEEET
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC-------EEEEEeecCCCCCCeEEEEEC
Confidence 679999999998877 443 35577899999999998 6666533 588999863
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-19 Score=172.74 Aligned_cols=243 Identities=11% Similarity=0.097 Sum_probs=168.6
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeC---CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSG---DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
..+...+..++|+|+|+ |++++. ++.|.+|++.++... .+... ..+...+..++|+|+|++
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-----------~~~~~----~~~~~~p~~~a~spdg~~ 99 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-----------KLNTV----VAPGTPPAYVAVDEARQL 99 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-----------EEEEE----EEESCCCSEEEEETTTTE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-----------Eeeee----ecCCCCCEEEEECCCCCE
Confidence 34557788899999999 554443 689999999655321 11111 122456889999999999
Q ss_pred EEEEE-CCCeEEEEECCC--ce--EEEecC---------ccCCeEEEEEecCCCEEEEEecCCeEEEEEcC-CCceEEE-
Q 010754 289 LATGS-YDGQARIWSTNG--DL--KCTLSK---------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEWKQQ- 352 (502)
Q Consensus 289 l~s~~-~dg~i~iwd~~~--~~--~~~~~~---------~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~- 352 (502)
|++++ .++.|.+|++.. .. ...+.. +...+.+++|+|+|+.+++...++.|.+||+. +++....
T Consensus 100 l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~ 179 (347)
T 3hfq_A 100 VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQS 179 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEE
T ss_pred EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEee
Confidence 98888 679999999752 21 222211 11248899999999966666668899999998 5543322
Q ss_pred -Eeec-cCCeEEEEecCCCE-EE-EEeCCCeEEEEEcCC--Ccc--eEEEecCC------CcEEEEEEcCCCCEE-EEEe
Q 010754 353 -FEFH-SGPTLDVDWRNNVS-FA-TSSTDNMIYVCKIGE--NRP--IKTFAGHQ------GEVNCVKWDPTGSLL-ASCS 417 (502)
Q Consensus 353 -~~~~-~~~v~~v~~~~~~~-~~-~~~~d~~i~i~d~~~--~~~--~~~~~~h~------~~i~~l~~sp~g~~l-as~s 417 (502)
+... ...+..+.|++++. ++ ++..++.|.+|++.. ++. +..+.... ..+..++|+|+|++| +++.
T Consensus 180 ~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~ 259 (347)
T 3hfq_A 180 VLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR 259 (347)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred eEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence 2222 23577899998775 44 456788999999874 432 23333322 358899999999987 5566
Q ss_pred CCCcEEEEECC---CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-CceEEEEee
Q 010754 418 DDVTAKIWNMK---QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWICS 477 (502)
Q Consensus 418 ~dg~i~iwd~~---~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~~~ 477 (502)
.++.|.+|++. +.+.+..+..+...+..++|+|+|. .+++++.+ +.+.+|..+
T Consensus 260 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~-------~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 260 GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA-------FVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS-------EEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC-------EEEEEEcCCCcEEEEEEe
Confidence 78999999997 3355666666666789999999998 66666554 678888543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-19 Score=172.67 Aligned_cols=235 Identities=7% Similarity=0.006 Sum_probs=180.4
Q ss_pred CCceEEEEEcCCCCeEEEEeC-------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 215 TSEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
...+..++|+|++++|++++. ++.|.+||..+++... .... ...+..++|+|+|+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~-------------~~~~-----~~~~~~~~~s~dg~ 101 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ-------------AIHN-----DLKPFGATINNTTQ 101 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE-------------EEEE-----SSCCCSEEEETTTT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE-------------EEec-----CCCcceEEECCCCC
Confidence 456789999999998888874 5689999998765321 1110 23467899999999
Q ss_pred EEEEE-ECCCeEEEEECCC-ceEEEecCccCC---------eEEEEEecCCCEEEEEe--cCCeEEEEEcCCCceEEEEe
Q 010754 288 LLATG-SYDGQARIWSTNG-DLKCTLSKHKGP---------IFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFE 354 (502)
Q Consensus 288 ~l~s~-~~dg~i~iwd~~~-~~~~~~~~~~~~---------v~~l~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~ 354 (502)
+++++ ..++.|.+||..+ .....+..+... +.+++|+|+++++++++ .++.|.+||..+++.+..+.
T Consensus 102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~ 181 (353)
T 3vgz_A 102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ 181 (353)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC
T ss_pred EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec
Confidence 66555 4579999999864 444555443322 68899999999888776 47899999999999888887
Q ss_pred eccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEec----CCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 010754 355 FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMK 428 (502)
Q Consensus 355 ~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~----h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~ 428 (502)
.+...+..+.|+++ ..+++++.++.|.+||..+++.+..+.. +...+.+++|+|+|++|+.++. ++.|.+||..
T Consensus 182 ~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 182 NTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp CCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred CCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 56666788899776 4578888899999999999998887764 4567889999999997776665 5999999999
Q ss_pred CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEe
Q 010754 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWIC 476 (502)
Q Consensus 429 ~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~ 476 (502)
+++.+..+.... ...++|+|+|. .++++. .++.+.+|+.
T Consensus 262 ~~~~~~~~~~~~--~~~~~~s~dg~-------~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 262 NGNILAKVAAPE--SLAVLFNPARN-------EAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp TCCEEEEEECSS--CCCEEEETTTT-------EEEEEETTTTEEEEEET
T ss_pred CCcEEEEEEcCC--CceEEECCCCC-------EEEEEECCCCeEEEEEC
Confidence 999888877443 25799999997 555555 4677888863
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-20 Score=193.68 Aligned_cols=248 Identities=10% Similarity=0.104 Sum_probs=175.7
Q ss_pred ceEEeccCCC---ceEEEEEcCCCCeEEEEeCC---------CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCC
Q 010754 207 DVTILEGHTS---EVCACAWSPAGSLLASGSGD---------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS 274 (502)
Q Consensus 207 ~~~~l~~H~~---~V~~~~~~p~~~~l~sgs~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (502)
....+.+|.. .|.+++|||||++|++++.+ +.+.+||+.+++... + .....+.
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--------------l-~~~~~~~ 113 (723)
T 1xfd_A 49 STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--------------L-DPPEVSN 113 (723)
T ss_dssp CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--------------C-CCTTCCS
T ss_pred EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe--------------c-cCCcccc
Confidence 3455666665 49999999999999999875 778899998875310 1 1112234
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCce-EEEecCccCCe------------------EEEEEecCCCEEEEEec
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-KCTLSKHKGPI------------------FSLKWNKKGDYLLTGSC 335 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~v------------------~~l~~~~~~~~l~s~~~ 335 (502)
..+..++|||||+.|++++. +.|++|++.+.. ......+...+ .+++|+|+|++|++++.
T Consensus 114 ~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~ 192 (723)
T 1xfd_A 114 AKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (723)
T ss_dssp CCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred ccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEE
Confidence 45889999999999999986 899999987543 33334333333 78999999999998876
Q ss_pred CC----------------------------------eEEEEEcCCCceEEEEeec------cCCeEEEEecCCCEEE-EE
Q 010754 336 DK----------------------------------TAIVWDVKTEEWKQQFEFH------SGPTLDVDWRNNVSFA-TS 374 (502)
Q Consensus 336 d~----------------------------------~i~~wd~~~~~~~~~~~~~------~~~v~~v~~~~~~~~~-~~ 374 (502)
|+ .|++||+.+++....+..+ ...+..+.|+|++.++ +.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~ 272 (723)
T 1xfd_A 193 NDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW 272 (723)
T ss_dssp ECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred CCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE
Confidence 53 7999999988765555543 4568899999998755 33
Q ss_pred e----CCCeEEEEEcCCCcceEEEec-CCCcEE----EEEEcCCCCEEEE--EeCCC------cEEEEE-CCCCe--eEE
Q 010754 375 S----TDNMIYVCKIGENRPIKTFAG-HQGEVN----CVKWDPTGSLLAS--CSDDV------TAKIWN-MKQDK--YVH 434 (502)
Q Consensus 375 ~----~d~~i~i~d~~~~~~~~~~~~-h~~~i~----~l~~sp~g~~las--~s~dg------~i~iwd-~~~~~--~~~ 434 (502)
. .+..|++||+.+++....+.. +...+. .++|+|+|+.|+. +..++ .|++|| ..++. +..
T Consensus 273 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (723)
T 1xfd_A 273 LNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ 352 (723)
T ss_dssp EETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC
T ss_pred EcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee
Confidence 2 235799999999887666644 334443 7899999997765 45677 577777 34444 145
Q ss_pred EeccCCCcEEE-EEEccCCCCCCCCCccEEEEeec---CceEEEEee
Q 010754 435 DLREHSKEIYT-IRWSPTGSGTNNPNQQLILARLI---PYFLYWICS 477 (502)
Q Consensus 435 ~~~~h~~~i~~-v~~sp~g~~~~~~~~~l~las~~---~~~~iw~~~ 477 (502)
.+..+...+.. ++|+|||. .|+..+.+ +.+.+|..+
T Consensus 353 ~l~~~~~~~~~~~~~spdg~-------~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 353 SITSGDWDVTKILAYDEKGN-------KIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp BSCCSSSCEEEEEEEETTTT-------EEEEEESSSCTTCCEEEEEC
T ss_pred EeecCCeEEEeeeEEcCCCC-------EEEEEEcCCCCcceEEEEEe
Confidence 55544445555 69999998 55555554 668888754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-20 Score=202.68 Aligned_cols=250 Identities=12% Similarity=0.093 Sum_probs=196.0
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC-C
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN-G 284 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~ 284 (502)
...+.+.+|. .+.+.+|+|+|++|+++. ++.|.+|++...... .+..... ........+...+.+++|+ |
T Consensus 236 ~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~------~~~~~~~~~~~~v~~~~~S~p 306 (1045)
T 1k32_A 236 KDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDL------ESPEDRIISIPSKFAEDFSPL 306 (1045)
T ss_dssp CSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCC------CBCCSEEEECGGGGEEEEEEC
T ss_pred CcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcc------cccccccccccccceeeecCC
Confidence 3456666665 467789999999999885 799999998433211 1110000 0000011234468999999 9
Q ss_pred CCCEEEEEECCCeEEEEECCCceEEEecCccC-CeEEEEEecCCCEEEEEecCCeEE-EEEcCCCceEEEEeeccCCeEE
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKTAI-VWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~s~~~d~~i~-~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
+|+.|++++ ++.|.+|+..+.....+..|.. .+..++|+ +|+.|++++.++.+. +||+.++.... +..+...+..
T Consensus 307 dG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~ 383 (1045)
T 1k32_A 307 DGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFA 383 (1045)
T ss_dssp GGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEE
T ss_pred CCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceee
Confidence 999999988 7899999988776666777877 89999999 999999998888899 99998876544 3467778999
Q ss_pred EEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC----------cEEEEECCCCe
Q 010754 363 VDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV----------TAKIWNMKQDK 431 (502)
Q Consensus 363 v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg----------~i~iwd~~~~~ 431 (502)
+.|+|++ .+++++.++.|++||+.+++....+.+|...+.+++|+|||++|++++.++ .|++||+.+++
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9998875 477889999999999999988888878999999999999999999887654 89999999988
Q ss_pred eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 432 ~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+..+..|...+.+++|+|||. .+++++.++....|.
T Consensus 464 -~~~l~~~~~~~~~~~~spdG~-------~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 464 -IFAATTENSHDYAPAFDADSK-------NLYYLSYRSLDPSPD 499 (1045)
T ss_dssp -EEECSCSSSBEEEEEECTTSC-------EEEEEESCCCCCEEC
T ss_pred -EEEeeCCCcccCCceEcCCCC-------EEEEEecccCCcCcc
Confidence 667778888899999999998 677777766666664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-19 Score=170.90 Aligned_cols=235 Identities=11% Similarity=0.098 Sum_probs=170.2
Q ss_pred ceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE--
Q 010754 217 EVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-- 293 (502)
Q Consensus 217 ~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-- 293 (502)
.+.+++|+|+++.+ ++++.++.|.+||+.+++.... +.. .....+...+.+++|+|+|++|++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 102 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGR----------IDL--STPEERVKSLFGAALSPDGKTLAIYESP 102 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEE----------EEC--CBTTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEee----------EEc--CCcccccccccceEECCCCCEEEEEecc
Confidence 47889999999765 5566688999999987653211 100 00000112467899999999998886
Q ss_pred ----------CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 294 ----------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 294 ----------~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
.++.|.+||+.+............+.+++|+|++++|+++ ++.|.+||+.+++....+..+... ..+
T Consensus 103 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~ 179 (337)
T 1pby_B 103 VRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AET 179 (337)
T ss_dssp EEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTT
T ss_pred cccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCc
Confidence 5799999998764433322234567889999999988887 689999999999887777654311 122
Q ss_pred EecCCCE-EEE-EeCCC-----------------------eEEEEEcCCCcce-EEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 364 DWRNNVS-FAT-SSTDN-----------------------MIYVCKIGENRPI-KTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 364 ~~~~~~~-~~~-~~~d~-----------------------~i~i~d~~~~~~~-~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
.|++++. ++. +..++ .|.+||+.+++.. ..+..+...+.+++|+|+|++|+++
T Consensus 180 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~- 258 (337)
T 1pby_B 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA- 258 (337)
T ss_dssp BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-
T ss_pred eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-
Confidence 5555443 222 21222 5789999988764 3344566778999999999999988
Q ss_pred CCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 418 ~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++.|++||+.+++.+..+..+ ..+.+++|+|+|. .+++++.++.+.+|+.
T Consensus 259 -~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~-------~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 259 -YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGS-------TVWLGGALGDLAAYDA 308 (337)
T ss_dssp -ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSC-------EEEEESBSSEEEEEET
T ss_pred -CCeEEEEECCCCcCcceecCC-CceeeEEECCCCC-------EEEEEcCCCcEEEEEC
Confidence 789999999999988877643 4578999999998 7788878888999974
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=169.39 Aligned_cols=209 Identities=13% Similarity=0.163 Sum_probs=156.0
Q ss_pred EEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEE-
Q 010754 232 SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKC- 309 (502)
Q Consensus 232 sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~- 309 (502)
+++.|++|++||+.+++.. . ...+...|.+++|+|+|++|++++ ++.|++||+.+ ....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-----------~-------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~ 77 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-----------V-------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK 77 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-----------E-------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE
T ss_pred CCCcceeEEEEeCCCCcee-----------e-------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE
Confidence 4467899999999876421 1 112356799999999999999987 78999999876 4433
Q ss_pred EecCc-cCCeEEEEEecCCCEEEEEec--CCeEEE--EEcCCCceEEEEeeccCCeEEEEecCCCE-EE-EEeCCCeEEE
Q 010754 310 TLSKH-KGPIFSLKWNKKGDYLLTGSC--DKTAIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FA-TSSTDNMIYV 382 (502)
Q Consensus 310 ~~~~~-~~~v~~l~~~~~~~~l~s~~~--d~~i~~--wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~-~~~~d~~i~i 382 (502)
....+ ...+.+++|+|++++|++++. ++.+.| |++.++. ...+.. ...+..+.|++++. ++ +++.++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l 155 (297)
T 2ojh_A 78 VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDI 155 (297)
T ss_dssp CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEE
T ss_pred eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEE
Confidence 33344 367899999999999999983 344455 4555554 333333 33588899988764 44 6778899999
Q ss_pred EEcCC-CcceEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCeeEEEeccCCCcEEEEEEccCCCCCCCCC
Q 010754 383 CKIGE-NRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMK-QDKYVHDLREHSKEIYTIRWSPTGSGTNNPN 459 (502)
Q Consensus 383 ~d~~~-~~~~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~-~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~ 459 (502)
|++.. ......+..|...+.+++|+|+|++|+.++ .++.++||++. .+..+..+..|...+..++|+|+|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~------ 229 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD------ 229 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS------
T ss_pred EEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC------
Confidence 98643 334566677888999999999999888766 58999999986 5666777888888899999999998
Q ss_pred ccEEEEeec
Q 010754 460 QQLILARLI 468 (502)
Q Consensus 460 ~~l~las~~ 468 (502)
.+++++.+
T Consensus 230 -~l~~~~~~ 237 (297)
T 2ojh_A 230 -KVVFVSYD 237 (297)
T ss_dssp -EEEEEEEE
T ss_pred -EEEEEEcC
Confidence 66777665
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-20 Score=190.93 Aligned_cols=230 Identities=13% Similarity=0.141 Sum_probs=170.2
Q ss_pred CCceEEEEEcCCCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
..+|++++|+|||++||+++. ||+++||++.++... .+ ...+...+..++|+|| +++++++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~--------------~l---t~~~~~~~~~~~~spd-~~l~~~~ 82 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV--------------KL---NREPINSVLDPHYGVG-RVILVRD 82 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE--------------EC---CSSCCSEECEECTTCS-EEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE--------------ee---ecccccccccccCCCC-eEEEEec
Confidence 456999999999999999887 999999998554311 11 1112246899999999 7788777
Q ss_pred C---CCeEEEE--EC--CCceEEEecCccCCeEEEEEecCCCE-EEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 294 Y---DGQARIW--ST--NGDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 294 ~---dg~i~iw--d~--~~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
. +...++| +. .+... .+... ..+...+|+|+++. +++.+.++.+.+||+.+++.......+. .++.|
T Consensus 83 ~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~ 157 (582)
T 3o4h_A 83 VSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVS 157 (582)
T ss_dssp CSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEE
T ss_pred cCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEE
Confidence 5 4555565 45 44444 33322 23456788888853 3444455556699999987665554333 78888
Q ss_pred cCCCE-EEEEeCC----CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEecc
Q 010754 366 RNNVS-FATSSTD----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 366 ~~~~~-~~~~~~d----~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg--~i~iwd~~~~~~~~~~~~ 438 (502)
+|++. +++++.+ +.|++||+.+++.. .+..|.+.+..++|||||++|++++.+| .|++||+.+++.. .+..
T Consensus 158 spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~ 235 (582)
T 3o4h_A 158 DIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLEL 235 (582)
T ss_dssp EEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCC
T ss_pred CCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccC
Confidence 87665 5556655 78999999888754 6778888999999999999999888888 8999999999887 7777
Q ss_pred CCCcEEEEE--------EccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 439 HSKEIYTIR--------WSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 439 h~~~i~~v~--------~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|...+..++ |+|||. .+++++.++.+++|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~spdg~-------~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 236 PSKDFSSYRPTAITWLGYLPDGR-------LAVVARREGRSAVFID 274 (582)
T ss_dssp SCSHHHHHCCSEEEEEEECTTSC-------EEEEEEETTEEEEEET
T ss_pred CCcChhhhhhccccceeEcCCCc-------EEEEEEcCCcEEEEEE
Confidence 877777777 999997 6677777888888874
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-20 Score=194.82 Aligned_cols=234 Identities=9% Similarity=0.090 Sum_probs=172.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|.+++|+|+ ..++.+. |+.|++||+.+++.. . . ..+...+.+++|+|||+.|+++ .+
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-----------~---l----~~~~~~~~~~~~SpdG~~la~~-~~ 140 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-----------Y---L----FDTNEETASLDFSPVGDRVAYV-RN 140 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-----------E---E----ECCTTCCTTCEECTTSSEEEEE-ET
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-----------E---c----cCCcccccCCcCCCCCCEEEEE-EC
Confidence 56999999999 6665554 599999999876421 0 1 1123457889999999999985 67
Q ss_pred CeEEEEECCC-----ceEEE-ecCccCC--------------eEEEEEecCCCEEEEEe---------------------
Q 010754 296 GQARIWSTNG-----DLKCT-LSKHKGP--------------IFSLKWNKKGDYLLTGS--------------------- 334 (502)
Q Consensus 296 g~i~iwd~~~-----~~~~~-~~~~~~~--------------v~~l~~~~~~~~l~s~~--------------------- 334 (502)
+.|++|++.+ ..... ...+... +.++.|+|+|++|++++
T Consensus 141 ~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 141 HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCce
Confidence 9999999875 44333 3333332 48999999999999987
Q ss_pred ------------cCCeEEEEEcCCCceEEEEe--eccCCeEEEEecCCCE-EEEEeCCC-----eEEEEEcCCCcceEEE
Q 010754 335 ------------CDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVS-FATSSTDN-----MIYVCKIGENRPIKTF 394 (502)
Q Consensus 335 ------------~d~~i~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~-~~~~~~d~-----~i~i~d~~~~~~~~~~ 394 (502)
.+..|++||+.+++...... .+...+..+.|++++. +++++.++ .|++||+.+++....+
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 300 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTL 300 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEE
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEE
Confidence 44689999999887654432 3456689999998775 66666665 8999999998433333
Q ss_pred e-c-CCC---cEEEEEEcC--CCCEEEEEeCCCcEEEEECC-CCeeEEEeccCCCcEEE-EEEccCCCCCCCCCccEEEE
Q 010754 395 A-G-HQG---EVNCVKWDP--TGSLLASCSDDVTAKIWNMK-QDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILA 465 (502)
Q Consensus 395 ~-~-h~~---~i~~l~~sp--~g~~las~s~dg~i~iwd~~-~~~~~~~~~~h~~~i~~-v~~sp~g~~~~~~~~~l~la 465 (502)
. . +.. .+.+++|+| +|++|++++.||.++||.+. +++.+..+..|...+.+ ++|+|+|. .++++
T Consensus 301 ~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~-------~l~~~ 373 (706)
T 2z3z_A 301 FVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGT-------RLYFE 373 (706)
T ss_dssp EEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSS-------EEEEE
T ss_pred EEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCC-------EEEEE
Confidence 2 2 222 246789999 99999999999999999886 67778888888888887 89999997 55555
Q ss_pred eecC---ceEEEEee
Q 010754 466 RLIP---YFLYWICS 477 (502)
Q Consensus 466 s~~~---~~~iw~~~ 477 (502)
+.+. ...+|.++
T Consensus 374 ~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 374 STEASPLERHFYCID 388 (706)
T ss_dssp ESSSCTTCBEEEEEE
T ss_pred ecCCCCceEEEEEEE
Confidence 5543 35777654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=200.23 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=188.6
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.....+.+|...+.++.|+++ .++++++.|++++||.+....... ..+. .+ ..+..++|+|+
T Consensus 194 ~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~------------~~l~----~~-~~~~~~~~SpD 255 (1045)
T 1k32_A 194 GAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL------------RKHT----SF-TDYYPRHLNTD 255 (1045)
T ss_dssp TEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC------------EECC----CC-CSSCEEEEEES
T ss_pred CCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc------------eEec----CC-CCcceeeEcCC
Confidence 345667899999999999988 677788889999999875321100 0011 11 23567799999
Q ss_pred CCEEEEEECCCeEEEEECCCceEEEecC-----------ccCCeEEEEEe-cCCCEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 286 GTLLATGSYDGQARIWSTNGDLKCTLSK-----------HKGPIFSLKWN-KKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~l~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
|+.|+++. ++.|.+|+.....+..+.. |...+.+++|+ |+|++|++++ ++.|.+|++.++.... +
T Consensus 256 G~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~ 332 (1045)
T 1k32_A 256 GRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V 332 (1045)
T ss_dssp SSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C
T ss_pred CCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c
Confidence 99998885 8999999986655555444 34468999999 9999998887 8899999998876543 5
Q ss_pred eeccC-CeEEEEecCCC-EEEEEeCCCeEE-EEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 354 EFHSG-PTLDVDWRNNV-SFATSSTDNMIY-VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 354 ~~~~~-~v~~v~~~~~~-~~~~~~~d~~i~-i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
..+.. .+..+.|+ ++ .+++++.++.+. +|++..+... .+.+|...+..++|+|+|++|++++.++.|++||+.++
T Consensus 333 ~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg 410 (1045)
T 1k32_A 333 PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG 410 (1045)
T ss_dssp SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC
Confidence 55666 78899999 54 577778888888 9999877654 34478889999999999999999999999999999999
Q ss_pred eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC----------ceEEEE
Q 010754 431 KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP----------YFLYWI 475 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~----------~~~iw~ 475 (502)
+....+.+|...+.+++|||||. .++.++.++ .+.+|+
T Consensus 411 ~~~~~~~~~~~~v~~~~~SpDG~-------~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 411 KPTVIERSREAMITDFTISDNSR-------FIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp CEEEEEECSSSCCCCEEECTTSC-------EEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred ceEEeccCCCCCccceEECCCCC-------eEEEEecCccccccCCCCCeEEEEE
Confidence 98887778999999999999998 666666544 677775
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-19 Score=167.43 Aligned_cols=227 Identities=7% Similarity=0.011 Sum_probs=163.9
Q ss_pred EEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-CCeEE
Q 010754 222 AWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-DGQAR 299 (502)
Q Consensus 222 ~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~-dg~i~ 299 (502)
.|.+++ ..+++++.++.|++||+.+++... ... .+...+ +++|+|+|+++++++. ++.|.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~-------------~~~----~~~~~~-~~~~s~dg~~l~~~~~~~~~i~ 65 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILN-------------QIT----LGYDFV-DTAITSDCSNVVVTSDFCQTLV 65 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEE-------------EEE----CCCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceee-------------eEE----ccCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence 455554 457888889999999998876321 111 113345 9999999997777766 88999
Q ss_pred EEECCCc-e-EEEecCccCCeEEEEEecCCCEEEEEecCC---eEEEEEcCCCceEEEEeeccCCeEEEEecCCCE--EE
Q 010754 300 IWSTNGD-L-KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS--FA 372 (502)
Q Consensus 300 iwd~~~~-~-~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~ 372 (502)
+||..+. . ...+..+..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. ......+.|+|++. ++
T Consensus 66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~ 144 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLIL 144 (331)
T ss_dssp EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEE
T ss_pred EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEE
Confidence 9998654 3 555666666666699999999999655553 899999999998887764 34568999988763 45
Q ss_pred EEeCCCe-EEEEEcCCCcce----EEEecCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee---EEEeccCCCcE
Q 010754 373 TSSTDNM-IYVCKIGENRPI----KTFAGHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWNMKQDKY---VHDLREHSKEI 443 (502)
Q Consensus 373 ~~~~d~~-i~i~d~~~~~~~----~~~~~h~~~i~~l~~sp~g~~las-~s~dg~i~iwd~~~~~~---~~~~~~h~~~i 443 (502)
+...++. |.+|++.....+ .........+.+++|+|+|++|+. +..++.|++||+.+++. +..+..+ ..+
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~ 223 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLP 223 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCC
T ss_pred EecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCC
Confidence 5566688 999999865433 122234556899999999996554 55689999999999988 7777644 567
Q ss_pred EEEEEccCCCCCCCCCccEEEEee-cCceEEEE
Q 010754 444 YTIRWSPTGSGTNNPNQQLILARL-IPYFLYWI 475 (502)
Q Consensus 444 ~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~ 475 (502)
..++|+|+|. .+++++. ++.+.+|+
T Consensus 224 ~~~~~spdg~-------~l~v~~~~~~~i~~~d 249 (331)
T 3u4y_A 224 GTIVVSRDGS-------TVYVLTESTVDVFNFN 249 (331)
T ss_dssp CCEEECTTSS-------EEEEECSSEEEEEEEE
T ss_pred ceEEECCCCC-------EEEEEEcCCCEEEEEE
Confidence 8999999998 5555443 45566665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-19 Score=171.36 Aligned_cols=228 Identities=9% Similarity=0.007 Sum_probs=168.9
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE-EECCCeE
Q 010754 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT-GSYDGQA 298 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s-~~~dg~i 298 (502)
.+++++++.++++++.+++|++||+.+++... .+.. +....+..++|+|+|+++++ +..++.|
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~-------------~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK-------------SCVM---PDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEE-------------EEEC---SSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEE-------------EEec---CCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 35678888999999999999999998765321 1111 11124778999999986654 4568999
Q ss_pred EEEECCCc-eEEEecCc------cCCeEEEEEecCCCEEEEEecC------------CeEEEEEcCCCce---EEEEeec
Q 010754 299 RIWSTNGD-LKCTLSKH------KGPIFSLKWNKKGDYLLTGSCD------------KTAIVWDVKTEEW---KQQFEFH 356 (502)
Q Consensus 299 ~iwd~~~~-~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~d------------~~i~~wd~~~~~~---~~~~~~~ 356 (502)
.+||+.+. ....+... ...+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+. +
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M 146 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence 99998754 34344322 2337889999999999998865 8999999988543 33343 3
Q ss_pred cCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC--------------------------------------
Q 010754 357 SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-------------------------------------- 398 (502)
Q Consensus 357 ~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-------------------------------------- 398 (502)
...+.+++|++++.+++++ +.|++||+.+++.+..+..+.
T Consensus 147 ~~~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 224 (349)
T 1jmx_B 147 PRQVYLMRAADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 224 (349)
T ss_dssp CSSCCCEEECTTSCEEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-----
T ss_pred CCcccceeECCCCcEEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC
Confidence 3457888898887766654 349999999888776664331
Q ss_pred ------------------------------CcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEE
Q 010754 399 ------------------------------GEVNCVKWDP-TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (502)
Q Consensus 399 ------------------------------~~i~~l~~sp-~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~ 447 (502)
..+.+++|+| +|++|+++ ++.|++||+.+++.+..+.. ...+.+++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~ 301 (349)
T 1jmx_B 225 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVA 301 (349)
T ss_dssp --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEE
T ss_pred CccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccceE
Confidence 1345678889 99999888 88999999999998887763 34578999
Q ss_pred EccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 448 WSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 448 ~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|+|+|. .+++++.++.+.+|+.
T Consensus 302 ~s~dg~-------~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 302 FDKKGD-------KLYLGGTFNDLAVFNP 323 (349)
T ss_dssp ECSSSS-------CEEEESBSSEEEEEET
T ss_pred ECCCCC-------EEEEecCCCeEEEEec
Confidence 999997 6777777888999975
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-18 Score=163.40 Aligned_cols=225 Identities=9% Similarity=0.176 Sum_probs=154.8
Q ss_pred eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC-CeEEEEECC--C
Q 010754 229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD-GQARIWSTN--G 305 (502)
Q Consensus 229 ~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d-g~i~iwd~~--~ 305 (502)
++++++.|+.|++|++..... ...... ..+...+.+++|+|+|++|++++.+ +.|.+|+++ +
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~----------~~~~~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~ 71 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA----------LTLTQV-----VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 71 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC----------EEEEEE-----EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEeCCCCCeEEEEEECCCCc----------EEEeee-----EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC
Confidence 455557899999999863211 001111 1234568899999999999999887 999999986 3
Q ss_pred ce---EEEecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcC---CCceEEEEeeccCCeEEEEecCCC-EEEEEe-C
Q 010754 306 DL---KCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK---TEEWKQQFEFHSGPTLDVDWRNNV-SFATSS-T 376 (502)
Q Consensus 306 ~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~---~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~-~ 376 (502)
.. ...+..+ ..+..++|+|++++|++++. ++.|.+||+. +......+. ....+.++.|++++ .+++++ .
T Consensus 72 ~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~ 149 (343)
T 1ri6_A 72 GALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALK 149 (343)
T ss_dssp CCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGG
T ss_pred CceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCC
Confidence 22 2233333 37899999999998877665 8899999994 333444443 33458889998876 456665 8
Q ss_pred CCeEEEEEcCC-CcceE----EEec-CCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCC--Cee--EEEec----cC--
Q 010754 377 DNMIYVCKIGE-NRPIK----TFAG-HQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQ--DKY--VHDLR----EH-- 439 (502)
Q Consensus 377 d~~i~i~d~~~-~~~~~----~~~~-h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~--~~~--~~~~~----~h-- 439 (502)
++.|++||+.+ ++... .+.. ....+.+++|+|+|++|++++ .++.|++|++.. ++. ...+. ++
T Consensus 150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (343)
T 1ri6_A 150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD 229 (343)
T ss_dssp GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccc
Confidence 99999999987 54322 2333 345788999999999776554 789999999953 432 22222 11
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEee
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWICS 477 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~~ 477 (502)
...+..++|+|+|. .++++. .++.+.+|...
T Consensus 230 ~~~~~~i~~s~dg~-------~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 230 TRWAADIHITPDGR-------HLYACDRTASLITVFSVS 261 (343)
T ss_dssp CCCEEEEEECTTSS-------EEEEEETTTTEEEEEEEC
T ss_pred cCCccceEECCCCC-------EEEEEecCCCEEEEEEEc
Confidence 23577899999997 555443 56788888765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=161.14 Aligned_cols=241 Identities=11% Similarity=0.113 Sum_probs=164.3
Q ss_pred CCCceEEEEEcCCCCeEEEEeCC----CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGD----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
|...+..++|+|+|++|++++.+ +.|.+|++....- ....+... ..+......+++ ++++|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g---------~~~~~~~~----~~~~~~p~~~~~--dg~~l 112 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG---------TLHLLNTQ----KTMGADPCYLTT--NGKNI 112 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT---------EEEEEEEE----ECSSSCEEEEEE--CSSEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC---------cEEEeeEe----ccCCCCcEEEEE--CCCEE
Confidence 67778889999999999999886 7999999875310 00111111 112345777888 88888
Q ss_pred EEEE-CCCeEEEEECCCc-eEE------EecC--------ccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCc----
Q 010754 290 ATGS-YDGQARIWSTNGD-LKC------TLSK--------HKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEE---- 348 (502)
Q Consensus 290 ~s~~-~dg~i~iwd~~~~-~~~------~~~~--------~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~---- 348 (502)
++++ .++.|.+|++... ... ...+ +...+.+++|+|+|+++++++. ++.|.+|++....
T Consensus 113 ~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~ 192 (361)
T 3scy_A 113 VTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADN 192 (361)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTT
T ss_pred EEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc
Confidence 7777 5789999997531 111 1111 1233588999999997766554 8899999987543
Q ss_pred ---eE-----EE-EeeccCCeEEEEecCCCE-EEEEe-CCCeEEEEEcCCCcc--eEEEe---cCCCcEEEEEEcCCCCE
Q 010754 349 ---WK-----QQ-FEFHSGPTLDVDWRNNVS-FATSS-TDNMIYVCKIGENRP--IKTFA---GHQGEVNCVKWDPTGSL 412 (502)
Q Consensus 349 ---~~-----~~-~~~~~~~v~~v~~~~~~~-~~~~~-~d~~i~i~d~~~~~~--~~~~~---~h~~~i~~l~~sp~g~~ 412 (502)
.. .. ..........+.|++++. +++++ .++.|.+|++.++.. +..+. .+...+..++|+|+|++
T Consensus 193 ~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~ 272 (361)
T 3scy_A 193 KEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY 272 (361)
T ss_dssp CCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE
T ss_pred ccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE
Confidence 21 11 222345678899998875 55555 689999999987653 33332 23345789999999999
Q ss_pred EEEEeC--CCcEEEEECC--CCe--eEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEEee
Q 010754 413 LASCSD--DVTAKIWNMK--QDK--YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWICS 477 (502)
Q Consensus 413 las~s~--dg~i~iwd~~--~~~--~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~~~ 477 (502)
|++++. ++.|.+|++. +++ .+..+.. ...+.+++|+|+|. .+++++ .++.+.+|.++
T Consensus 273 l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~-------~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 273 LYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGK-------YLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSC-------EEEEEETTTTEEEEEEEC
T ss_pred EEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCC-------EEEEEECCCCCEEEEEEE
Confidence 866665 4899999985 444 4444444 45688999999998 666666 45778887654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=192.09 Aligned_cols=235 Identities=12% Similarity=0.069 Sum_probs=164.7
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-----
Q 010754 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----- 294 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~----- 294 (502)
.++|+|+|.++++ +.|++|++||+.+++... . .... ......+.+++|||||++|++++.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~----------~---~~~~-~~~~~~~~~~~~SpDg~~la~~~~~~~~~ 84 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYT----------I---LSNR-TMKSVNASNYGLSPDRQFVYLESDYSKLW 84 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEE----------E---ECHH-HHHTTTCSEEEECTTSSEEEEEEEEEECS
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEE----------E---Eccc-cccccceeeEEECCCCCeEEEEecCceeE
Confidence 6799999965554 569999999998875311 0 1000 000124889999999999999876
Q ss_pred ----CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE-eeccCCe---------
Q 010754 295 ----DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPT--------- 360 (502)
Q Consensus 295 ----dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v--------- 360 (502)
++.|++||+.+............+..++|+|+|+.|+.+. ++.|++||+.+++..+.. .++...+
T Consensus 85 ~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~ 163 (719)
T 1z68_A 85 RYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVY 163 (719)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHH
T ss_pred EeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEccccccee
Confidence 7899999998765511011235688999999999999875 789999999888765432 1222222
Q ss_pred --------EEEEecCCCE-EEEEeCCC----------------------------------eEEEEEcCCCcce------
Q 010754 361 --------LDVDWRNNVS-FATSSTDN----------------------------------MIYVCKIGENRPI------ 391 (502)
Q Consensus 361 --------~~v~~~~~~~-~~~~~~d~----------------------------------~i~i~d~~~~~~~------ 391 (502)
..+.|+|++. |++++.|. .|++||+.+++..
T Consensus 164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 4799998864 66665442 7889999887653
Q ss_pred --EEEecCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCeeEEEe----ccCCCcEE-----EEEEccCC
Q 010754 392 --KTFAGHQGEVNCVKWDPTGSLLASCSDD----VTAKIWN----MKQDKYVHDL----REHSKEIY-----TIRWSPTG 452 (502)
Q Consensus 392 --~~~~~h~~~i~~l~~sp~g~~las~s~d----g~i~iwd----~~~~~~~~~~----~~h~~~i~-----~v~~sp~g 452 (502)
..+.+|...+..++|+||++++++.... ..|.+|| ..++++...+ ..|...+. .++|+|||
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 1234678889999999998887775432 2488999 8888776555 36676676 88999999
Q ss_pred CCCCCCCccEEEEe--ecCceEEEEee
Q 010754 453 SGTNNPNQQLILAR--LIPYFLYWICS 477 (502)
Q Consensus 453 ~~~~~~~~~l~las--~~~~~~iw~~~ 477 (502)
+ .+++.+ .++...+|.++
T Consensus 324 ~-------~l~~~~~~~~g~~~l~~~~ 343 (719)
T 1z68_A 324 I-------SYYKIFSDKDGYKHIHYIK 343 (719)
T ss_dssp S-------CEEEEEECTTSCEEEEEES
T ss_pred C-------eEEEEEEccCCceEEEEEE
Confidence 8 454433 34556666544
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-17 Score=154.48 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=174.6
Q ss_pred CceEEEEEcCCCCeEEEEeCC------------------------CcEEEEecCCCCccCCCCCCCceeEEEeeecCccc
Q 010754 216 SEVCACAWSPAGSLLASGSGD------------------------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~d------------------------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (502)
+.|.+++++|+|+++++.+.+ ++|.+||..+++... ... .
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-------------~~~---~ 87 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ-------------SSG---K 87 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE-------------EEC---T
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe-------------ccC---C
Confidence 679999999999999998887 468888877665311 110 1
Q ss_pred cCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc--eEEEe---------cCccCCeEEEEEec-CCCEEEEEe-cCCe
Q 010754 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--LKCTL---------SKHKGPIFSLKWNK-KGDYLLTGS-CDKT 338 (502)
Q Consensus 272 ~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~--~~~~~---------~~~~~~v~~l~~~~-~~~~l~s~~-~d~~ 338 (502)
.+......++++++|+++++...++.|++|+.++. .+..+ ..+-.....++++| ++..+++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 22346889999999998888888999999998876 45544 23444689999999 788777776 6899
Q ss_pred EEEEEcCCCceEEEEeecc----------CCeEEEEecCC-CE-EEEEeCCCeEEEEEcCCCcceEEEe--cCCCcEEEE
Q 010754 339 AIVWDVKTEEWKQQFEFHS----------GPTLDVDWRNN-VS-FATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCV 404 (502)
Q Consensus 339 i~~wd~~~~~~~~~~~~~~----------~~v~~v~~~~~-~~-~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~i~~l 404 (502)
|++|| .++..+..+.... .....+++.++ +. +++...++.|++|+..+++.+..+. .+...+.++
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 99999 5677777664332 23788999775 44 5666678899999999888888874 456678999
Q ss_pred EEcCCCCEEEEE-------eCCCcEEEEECCCCeeEEEec---cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEE
Q 010754 405 KWDPTGSLLASC-------SDDVTAKIWNMKQDKYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYW 474 (502)
Q Consensus 405 ~~sp~g~~las~-------s~dg~i~iwd~~~~~~~~~~~---~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw 474 (502)
+|+| +..+++. +.+..|++|+..+++.+..+. ++...+.+|+++|+|. .+++.+.++.+++|
T Consensus 247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~-------lyvad~~~~~I~~~ 318 (329)
T 3fvz_A 247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT-------VYIGDAHTNTVWKF 318 (329)
T ss_dssp EEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE-------EEEEESSSCCEEEE
T ss_pred eecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC-------EEEEECCCCEEEEE
Confidence 9999 4333333 345589999999999998873 5667799999999997 33333344555555
Q ss_pred E
Q 010754 475 I 475 (502)
Q Consensus 475 ~ 475 (502)
.
T Consensus 319 ~ 319 (329)
T 3fvz_A 319 T 319 (329)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-17 Score=161.05 Aligned_cols=240 Identities=9% Similarity=0.053 Sum_probs=164.7
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecC-CCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE--EE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIA-DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL--LA 290 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~--l~ 290 (502)
+...+..++|+|+|++|++++.+ .|.+|++. +++.. ...... . ...+.+++|+|+|++ ++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-----------~~~~~~--~---~g~~~~~~~spdg~~l~~~ 100 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-----------HEASHP--I---GGHPRANDADTNTRAIFLL 100 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-----------EEEEEE--C---CSSGGGGCTTSCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-----------EeeEee--c---CCCCccEEECCCCCEEEEE
Confidence 34568899999999999999887 99999986 54321 010110 0 012456889999994 44
Q ss_pred EEE-------------CCCeEEEEECC--CceEEEec----CccCCeEEEEEecCCCEEEEEec-CCeEEEEEcC-CCce
Q 010754 291 TGS-------------YDGQARIWSTN--GDLKCTLS----KHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVK-TEEW 349 (502)
Q Consensus 291 s~~-------------~dg~i~iwd~~--~~~~~~~~----~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~-~~~~ 349 (502)
++. .+|.+.+|+++ +.....+. .+...+.+++|+|+|++|++++. ++.|++||+. +++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~ 180 (365)
T 1jof_A 101 AAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV 180 (365)
T ss_dssp ECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred EecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE
Confidence 553 68999999985 34333332 24567899999999998887764 6799999998 7765
Q ss_pred EE--EEee--ccCCeEEEEecCCCE-EEEEe-CCCeEEEEEcC--CCcce---EEEe-------cCCC------cEEEEE
Q 010754 350 KQ--QFEF--HSGPTLDVDWRNNVS-FATSS-TDNMIYVCKIG--ENRPI---KTFA-------GHQG------EVNCVK 405 (502)
Q Consensus 350 ~~--~~~~--~~~~v~~v~~~~~~~-~~~~~-~d~~i~i~d~~--~~~~~---~~~~-------~h~~------~i~~l~ 405 (502)
.. .+.. +...+..+.|++++. +++++ .++.|.+|++. +++.. ..+. +|.. .+..++
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~ 260 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC 260 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEE
Confidence 32 2332 255689999998874 55555 47899999875 45432 1222 1222 588999
Q ss_pred -EcCCCCEEEEEeCC-C-----cEEEEECC-CCeeEE---EeccCCCcEEEEEEcc---CCCCCCCCCccEEEEeec-Cc
Q 010754 406 -WDPTGSLLASCSDD-V-----TAKIWNMK-QDKYVH---DLREHSKEIYTIRWSP---TGSGTNNPNQQLILARLI-PY 470 (502)
Q Consensus 406 -~sp~g~~las~s~d-g-----~i~iwd~~-~~~~~~---~~~~h~~~i~~v~~sp---~g~~~~~~~~~l~las~~-~~ 470 (502)
|+|+|++|++++.+ + .|.+|++. +++... .+..+...+..++|+| +|. .+++++.+ +.
T Consensus 261 ~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~-------~l~v~~~~~~~ 333 (365)
T 1jof_A 261 ALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-------WMAITDDQEGW 333 (365)
T ss_dssp EECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-------EEEEECSSSCE
T ss_pred EECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC-------EEEEEEcCCCe
Confidence 99999998776543 2 89999996 566543 2333455567899999 787 66666654 78
Q ss_pred eEEEEee
Q 010754 471 FLYWICS 477 (502)
Q Consensus 471 ~~iw~~~ 477 (502)
+.+|..+
T Consensus 334 v~v~~~~ 340 (365)
T 1jof_A 334 LEIYRWK 340 (365)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 8898764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-16 Score=145.24 Aligned_cols=242 Identities=13% Similarity=0.176 Sum_probs=176.7
Q ss_pred ccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE-CCCCCEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-NGEGTLLA 290 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-s~~g~~l~ 290 (502)
.+|...+.+++++|++.++++.+.++.|.+|+... +... .+. .......+...+..+++ .+++++++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~----------~~~-~~~~~~~~~~~p~~i~~~~~~g~l~v 93 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKF----------QFG-ECGKRDSQLLYPNRVAVVRNSGDIIV 93 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEE----------EEC-CBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEE----------Eec-ccCCCcccccCceEEEEEcCCCeEEE
Confidence 35567789999999999998888899999999763 2110 000 01111223356899999 57777666
Q ss_pred EEEC-CCeEEEEECCCceEEEecC-ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee--ccCCeEEEEec
Q 010754 291 TGSY-DGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWR 366 (502)
Q Consensus 291 s~~~-dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~v~~~ 366 (502)
+... ++.|.+|+.++.....+.. +...+.+++++|+|+.+++...++.|.+||. .++.+..+.. +...+..+++.
T Consensus 94 ~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 94 TERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp EECGGGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEEC
T ss_pred EcCCCCCEEEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEEC
Confidence 6543 7999999987777666543 3456899999999998888778899999996 4566665542 33468899998
Q ss_pred CCCEEEEE-eCCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCeeEEEeccCCC-
Q 010754 367 NNVSFATS-STDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSDDV-TAKIWNMKQDKYVHDLREHSK- 441 (502)
Q Consensus 367 ~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g~~las~s~dg-~i~iwd~~~~~~~~~~~~h~~- 441 (502)
+++.++++ ..++.|++|+. .+..+..+..+ ...+..|+++|+|+++++...++ .|++||. +++.+..+..+..
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~ 250 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH 250 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC
T ss_pred CCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCC
Confidence 87665544 56899999997 45556666543 36789999999999999888886 9999995 5677777764432
Q ss_pred -cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 442 -EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 442 -~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+.+++|+|+|. +++++.++.+++|.+
T Consensus 251 ~~~~~i~~~~~g~--------l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 251 AQCFDVALMDDGS--------VVLASKDYRLYIYRY 278 (286)
T ss_dssp SCEEEEEEETTTE--------EEEEETTTEEEEEEC
T ss_pred CcceeEEECCCCc--------EEEECCCCeEEEEEc
Confidence 478999999986 555566778888864
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-18 Score=173.70 Aligned_cols=241 Identities=9% Similarity=0.098 Sum_probs=174.0
Q ss_pred eeeCCCceEEeccCC-CceEEEEEcCCCCeEEEEeC---CCcEEEEecCC--CCccCCCCCCCceeEEEeeecCccccCC
Q 010754 201 FEIPNSDVTILEGHT-SEVCACAWSPAGSLLASGSG---DSTARIWTIAD--GTSNGGAQNGPLNVLVLKHVKGRTNEKS 274 (502)
Q Consensus 201 ~~~~~~~~~~l~~H~-~~V~~~~~~p~~~~l~sgs~---dg~v~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (502)
+.+.....+.+..|. ..|..++|+|+ +++++++. +...+||.+.. .... ..+. ..
T Consensus 49 w~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~-------------~~l~-----~~ 109 (582)
T 3o4h_A 49 YLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE-------------QRLE-----AV 109 (582)
T ss_dssp EEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC-------------EECT-----TS
T ss_pred EEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc-------------cccc-----CC
Confidence 344455566676666 68999999999 78887775 56667776643 2110 0000 01
Q ss_pred CCeEEEEECCCCCE-EEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC----CeEEEEEcCCCce
Q 010754 275 KDVTTLDWNGEGTL-LATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEW 349 (502)
Q Consensus 275 ~~v~~l~~s~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d----~~i~~wd~~~~~~ 349 (502)
..+...+|+|+|+. +++.+.++.+.+||+.+.....+..+.. .+++|+|+|++|++++.+ +.|++||+.+++.
T Consensus 110 ~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~ 187 (582)
T 3o4h_A 110 KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 187 (582)
T ss_dssp CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence 23446688888753 3334444555599988766555554444 889999999999988877 7899999988876
Q ss_pred EEEEeeccCCeEEEEecCCCE-EEEEeCCC--eEEEEEcCCCcceEEEecCCCcEEEEE--------EcCCCCEEEEEeC
Q 010754 350 KQQFEFHSGPTLDVDWRNNVS-FATSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVK--------WDPTGSLLASCSD 418 (502)
Q Consensus 350 ~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~--------~sp~g~~las~s~ 418 (502)
. .+..+...+..+.|+|++. ++++..++ .|++||+.+++.. .+.+|...+..++ |+|||.++++++.
T Consensus 188 ~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 188 R-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp E-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred e-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 5 5677778899999998875 66667778 8999999998877 7777877777777 9999999999999
Q ss_pred CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCc-eEEEEee
Q 010754 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPY-FLYWICS 477 (502)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~-~~iw~~~ 477 (502)
||.++||++ ++++. .+.+.|.+++|+ +|. .+++++.+.. ..+|.++
T Consensus 266 ~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~-------~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 266 EGRSAVFID--GERVE---APQGNHGRVVLW-RGK-------LVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp TTEEEEEET--TEEEC---CCSSEEEEEEEE-TTE-------EEEEEEETTEEEEEEEET
T ss_pred CCcEEEEEE--CCeec---cCCCceEEEEec-CCE-------EEEEEcCCCCCCeEEEEc
Confidence 999999999 76654 344679999999 887 5555555543 4555544
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=184.82 Aligned_cols=242 Identities=15% Similarity=0.169 Sum_probs=169.7
Q ss_pred EEeccCCC---ceEEEEEcCCCCeEEEEeC---------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCC
Q 010754 209 TILEGHTS---EVCACAWSPAGSLLASGSG---------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 276 (502)
Q Consensus 209 ~~l~~H~~---~V~~~~~~p~~~~l~sgs~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (502)
..+.+|.. .|.+++|||||++|++++. |+.|++||+.+++..... .+ ...
T Consensus 50 ~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-----------~l-------~~~ 111 (719)
T 1z68_A 50 TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN-----------EL-------PRP 111 (719)
T ss_dssp EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-----------CC-------CSS
T ss_pred EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce-----------ec-------Ccc
Confidence 34444443 3999999999999999876 789999999887631100 00 134
Q ss_pred eEEEEECCCCCEEEEEECCCeEEEEECCCceEEEe--cCccCCe-----------------EEEEEecCCCEEEEEecCC
Q 010754 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL--SKHKGPI-----------------FSLKWNKKGDYLLTGSCDK 337 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~v-----------------~~l~~~~~~~~l~s~~~d~ 337 (502)
+..++|||||+.|+++. ++.|++|++.+.....+ .++...| .+++|+|+|++|++++.|.
T Consensus 112 ~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~ 190 (719)
T 1z68_A 112 IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND 190 (719)
T ss_dssp BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC
T ss_pred cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC
Confidence 88899999999999986 78999999875443333 2333222 4899999999999987652
Q ss_pred ----------------------------------eEEEEEcCCCceE--EE------EeeccCCeEEEEecCCCEEEEEe
Q 010754 338 ----------------------------------TAIVWDVKTEEWK--QQ------FEFHSGPTLDVDWRNNVSFATSS 375 (502)
Q Consensus 338 ----------------------------------~i~~wd~~~~~~~--~~------~~~~~~~v~~v~~~~~~~~~~~~ 375 (502)
.|++||+.+++.. .. +..+...+..+.|+|++.++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~ 270 (719)
T 1z68_A 191 TDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQW 270 (719)
T ss_dssp TTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEE
T ss_pred CCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEE
Confidence 7889999887653 11 12356678999999998766542
Q ss_pred C---C--CeEEEEE----cCCCcceEEE----ecCCCcEE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCeeE
Q 010754 376 T---D--NMIYVCK----IGENRPIKTF----AGHQGEVN-----CVKWDPTGSLLAS--CSDDV--TAKIWNMKQDKYV 433 (502)
Q Consensus 376 ~---d--~~i~i~d----~~~~~~~~~~----~~h~~~i~-----~l~~sp~g~~las--~s~dg--~i~iwd~~~~~~~ 433 (502)
. + ..|++|| +.+++....+ .+|...+. .+.|+|+|+.|+. +..+| .|.+||+.+++ .
T Consensus 271 ~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~ 349 (719)
T 1z68_A 271 LKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-A 349 (719)
T ss_dssp EESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-C
T ss_pred eccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-e
Confidence 2 1 2488899 7777655444 46777776 8899999996544 44555 57777877766 4
Q ss_pred EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-----CceEEEEeee
Q 010754 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-----PYFLYWICSI 478 (502)
Q Consensus 434 ~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-----~~~~iw~~~~ 478 (502)
..+..+...+..+.++ +|. .++..+.. +...+|...+
T Consensus 350 ~~lt~~~~~v~~~~~~-d~~-------~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 350 IQITSGKWEAINIFRV-TQD-------SLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EECSCSSSCEEEEEEE-CSS-------EEEEEESCGGGCTTCBEEEEEEC
T ss_pred EecccCceEEEEEEEE-eCC-------EEEEEEecCCCCCceEEEEEEeC
Confidence 5566566678888888 776 55555543 6678887554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=177.56 Aligned_cols=237 Identities=10% Similarity=0.058 Sum_probs=165.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCcc-ccCCCCeEEEEECCCCCEEEEEECC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT-NEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
....++|+|+|.+|+++ |++|++|++.+++.... +..+. .........++|||||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~ 82 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF-------------LENSTFDEFGHSINDYSISPDGQFILLEYNY 82 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE-------------ECTTTTTTCCSCCCEEEECTTSSEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE-------------EechhhhhhcccccceEECCCCCEEEEEECC
Confidence 35688999999999886 89999999998763211 11111 1112233568999999999999876
Q ss_pred ---------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE-eeccCCe-----
Q 010754 296 ---------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPT----- 360 (502)
Q Consensus 296 ---------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v----- 360 (502)
+.+.+||+.+.....+..+...+...+|||+|+.|+.+ .++.|++||+.++...+.. .++...+
T Consensus 83 ~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 83 VKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred eeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 56779999988777788888899999999999999887 5789999999888754421 1222222
Q ss_pred ------------EEEEecCCCE-EEEEeCC------------------------------------CeEEEEEcCC---C
Q 010754 361 ------------LDVDWRNNVS-FATSSTD------------------------------------NMIYVCKIGE---N 388 (502)
Q Consensus 361 ------------~~v~~~~~~~-~~~~~~d------------------------------------~~i~i~d~~~---~ 388 (502)
..+.|+|++. |+..+.| ..|++||+.+ +
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~ 241 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSV 241 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSS
T ss_pred cccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCC
Confidence 3478998875 5544321 1588899988 7
Q ss_pred c--ceEEEe------cCCCcEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCe----eEE--Ee--ccCCCcEE----
Q 010754 389 R--PIKTFA------GHQGEVNCVKWDPTGSLLASCSD----DVTAKIWNMKQDK----YVH--DL--REHSKEIY---- 444 (502)
Q Consensus 389 ~--~~~~~~------~h~~~i~~l~~sp~g~~las~s~----dg~i~iwd~~~~~----~~~--~~--~~h~~~i~---- 444 (502)
. ....+. +|...+..++|+|||++++.... +..|++||+.+++ +.. .+ ..|...|.
T Consensus 242 ~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~ 321 (740)
T 4a5s_A 242 TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP 321 (740)
T ss_dssp SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC
T ss_pred CcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcC
Confidence 3 233343 37778999999999997665533 3479999999887 322 22 34555544
Q ss_pred -EEEEccCCCCCCCCCccEE-EEe-ecCceEEEEe
Q 010754 445 -TIRWSPTGSGTNNPNQQLI-LAR-LIPYFLYWIC 476 (502)
Q Consensus 445 -~v~~sp~g~~~~~~~~~l~-las-~~~~~~iw~~ 476 (502)
.++|+|||+ .++ .++ .++...+|.+
T Consensus 322 ~~p~fspDG~-------~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 322 SEPHFTLDGN-------SFYKIISNEEGYRHICYF 349 (740)
T ss_dssp CCCEECTTSS-------EEEEEEECTTSCEEEEEE
T ss_pred CCceEcCCCC-------EEEEEEEcCCCceEEEEE
Confidence 789999998 444 343 3455556543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-16 Score=149.20 Aligned_cols=215 Identities=12% Similarity=0.132 Sum_probs=149.2
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEEe-CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCc-----cccCCCCeEEEEE
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-----TNEKSKDVTTLDW 282 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sgs-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~l~~ 282 (502)
..+..|...+..++|+|+|++|++++ .++.|.+|++...... . .+...... .......+.+++|
T Consensus 79 ~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~--------~--~~~~~~~~~~~p~~~~~~~~~~~~~~ 148 (347)
T 3hfq_A 79 NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL--------T--LTDTVQHSGHGPRPEQDGSHIHYTDL 148 (347)
T ss_dssp EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE--------E--EEEEEECCCCCSSTTCSSCCEEEEEE
T ss_pred eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe--------e--ecceeecCCCCCCccccCCCceEEEE
Confidence 33455778899999999999888888 6899999999642210 0 11111100 0112345899999
Q ss_pred CCCCCEEEEEECCCeEEEEECC-CceEE---EecC-ccCCeEEEEEecCCCEEEE-EecCCeEEEEEcCC--CceE--EE
Q 010754 283 NGEGTLLATGSYDGQARIWSTN-GDLKC---TLSK-HKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKT--EEWK--QQ 352 (502)
Q Consensus 283 s~~g~~l~s~~~dg~i~iwd~~-~~~~~---~~~~-~~~~v~~l~~~~~~~~l~s-~~~d~~i~~wd~~~--~~~~--~~ 352 (502)
+|+|+++++...++.|++|++. ..... .+.. ....+..++|+|+|+++++ +..++.|.+|++.. ++.. ..
T Consensus 149 spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 149 TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee
Confidence 9999966666678899999987 32222 1122 2336788999999997665 45688999999874 5432 22
Q ss_pred Eeecc------CCeEEEEecCCCE-E-EEEeCCCeEEEEEcCCC---cceEEEecCCCcEEEEEEcCCCCEEEEEeC-CC
Q 010754 353 FEFHS------GPTLDVDWRNNVS-F-ATSSTDNMIYVCKIGEN---RPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DV 420 (502)
Q Consensus 353 ~~~~~------~~v~~v~~~~~~~-~-~~~~~d~~i~i~d~~~~---~~~~~~~~h~~~i~~l~~sp~g~~las~s~-dg 420 (502)
+.... ..+..++|++++. + ++...++.|.+|++... ..+..+..+...+..++|+|+|++|++++. ++
T Consensus 229 ~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 229 VKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308 (347)
T ss_dssp EESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTT
T ss_pred eeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCC
Confidence 32222 3478899998875 3 45667899999999732 456666666777899999999998888876 48
Q ss_pred cEEEE--ECCCCeeE
Q 010754 421 TAKIW--NMKQDKYV 433 (502)
Q Consensus 421 ~i~iw--d~~~~~~~ 433 (502)
.|.+| |..++++.
T Consensus 309 ~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 309 NATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEEECTTTCCEE
T ss_pred cEEEEEEeCCCCeEE
Confidence 99999 55566654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-16 Score=153.66 Aligned_cols=206 Identities=11% Similarity=0.075 Sum_probs=147.2
Q ss_pred ceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 217 EVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 217 ~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
.+..++|+|+++++ +++..++.|.+||+.+++.... +. ...........+.+++|+|+|++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~----------~~-~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 112 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH----------AN-LSSVPGEVGRSMYSFAISPDGKEVYATVNP 112 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE----------EE-SCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE----------EE-cccccccccccccceEECCCCCEEEEEccc
Confidence 57899999999855 4556789999999987653210 00 000000001237889999999999999865
Q ss_pred ------------CeEEEEECCCc----eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc--
Q 010754 296 ------------GQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-- 357 (502)
Q Consensus 296 ------------g~i~iwd~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-- 357 (502)
+.|.+||+.+. ....+. +...+.+++|+|+|+ +++++ +.|.+||+.+++.+..+....
T Consensus 113 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~ 188 (349)
T 1jmx_B 113 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWN 188 (349)
T ss_dssp EEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCC
T ss_pred ccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccC
Confidence 89999997642 122222 334688999999999 66654 349999999988776654331
Q ss_pred ------------------------------------------------------------------CCeEEEEecC-CCE
Q 010754 358 ------------------------------------------------------------------GPTLDVDWRN-NVS 370 (502)
Q Consensus 358 ------------------------------------------------------------------~~v~~v~~~~-~~~ 370 (502)
..+..++|++ ++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~ 268 (349)
T 1jmx_B 189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 268 (349)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT
T ss_pred CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC
Confidence 1233455656 554
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h 439 (502)
++..+ ++.|.+||+.+++.+..+.. ...+.+++|+|+|++|++++.++.|++||+.+++.+..+...
T Consensus 269 ~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 269 QIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 33333 89999999999988887763 345779999999999888888999999999999988777643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-17 Score=153.51 Aligned_cols=220 Identities=7% Similarity=-0.006 Sum_probs=158.3
Q ss_pred CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCC-CeEEEEECCCCCEEEE-EECCCeEEEEECCC
Q 010754 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSK-DVTTLDWNGEGTLLAT-GSYDGQARIWSTNG 305 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~~g~~l~s-~~~dg~i~iwd~~~ 305 (502)
.+|++++.++.|.+||+.+++... .... ++.. .+..++|+|+|+.+++ +..++.|.+||+.+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~-------------~~~~---~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 65 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDK-------------VITI---ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT 65 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE-------------EEEC---TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEE-------------EEEc---CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 478999999999999998765321 1110 1111 3778999999987654 45578999999864
Q ss_pred -ceEEEecC-c----cCCeEEEEEecCCCEEEEEe------------cCCeEEEEEcCCCceEEEEeeccCCeEEEEecC
Q 010754 306 -DLKCTLSK-H----KGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367 (502)
Q Consensus 306 -~~~~~~~~-~----~~~v~~l~~~~~~~~l~s~~------------~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~ 367 (502)
.....+.. + ...+.+++|+|+|++|++++ .++.|.+||+.+++.+..+.. ...+..+.|++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence 43433332 1 22678899999999999886 579999999999888877764 44577888988
Q ss_pred CCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-C-----------------------cE
Q 010754 368 NVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-V-----------------------TA 422 (502)
Q Consensus 368 ~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-g-----------------------~i 422 (502)
++. ++++ ++.|++||+.+++.+..+..+... ..+.|+|+|++|+.++.. + .|
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 765 5555 689999999999888777654411 123789999877655433 2 46
Q ss_pred EEEECCCCeeE-EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 423 KIWNMKQDKYV-HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 423 ~iwd~~~~~~~-~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
.+||+.+++.. ..+..+...+.+++|+|+|. .++++ ++.+.+|+.
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~l~~~--~~~v~~~d~ 267 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKT-------RAFGA--YNVLESFDL 267 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSS-------EEEEE--ESEEEEEET
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCC-------EEEEe--CCeEEEEEC
Confidence 89999998875 22335666789999999998 44444 788888864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-15 Score=145.24 Aligned_cols=232 Identities=10% Similarity=0.112 Sum_probs=153.7
Q ss_pred eccCCCceEEEEEcCCCCeEEEEe-CCCcEEEEecCCCCccCCCCCCCceeEEEee-ecCccccCCCCeEEEEECCCCCE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKH-VKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
+..+......+++ ++++|++++ .++.|.+|++........... ...... .......+...+.+++|+|+|++
T Consensus 95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD----VIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE----EEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce----eEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3445566777888 787777766 578999999976433221100 000000 00001122345789999999997
Q ss_pred EEEEE-CCCeEEEEECCCc--------e------EEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEE-
Q 010754 289 LATGS-YDGQARIWSTNGD--------L------KCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQ- 351 (502)
Q Consensus 289 l~s~~-~dg~i~iwd~~~~--------~------~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~- 351 (502)
+++++ .++.|.+|+++.. . ......+...+..++|+|+|+++++++ .++.|.+||+.++....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~ 248 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI 248 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence 76665 4789999987632 1 122233455678999999999888777 68999999998775432
Q ss_pred -EEee---ccCCeEEEEecCCCE-EEEEeC--CCeEEEEEcC--CCc--ceEEEecCCCcEEEEEEcCCCCEEEEEe-CC
Q 010754 352 -QFEF---HSGPTLDVDWRNNVS-FATSST--DNMIYVCKIG--ENR--PIKTFAGHQGEVNCVKWDPTGSLLASCS-DD 419 (502)
Q Consensus 352 -~~~~---~~~~v~~v~~~~~~~-~~~~~~--d~~i~i~d~~--~~~--~~~~~~~h~~~i~~l~~sp~g~~las~s-~d 419 (502)
.+.. +......+.|++++. ++++.. ++.|.+|++. ++. .+..+.. ...+.+++|+|+|++|++++ .+
T Consensus 249 ~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 249 QTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp EEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred EEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence 2222 223467999998876 445544 5899999996 344 4445554 55788999999999888887 57
Q ss_pred CcEEEEE--CCCCeeEEEec-cCCCcEEEEEEc
Q 010754 420 VTAKIWN--MKQDKYVHDLR-EHSKEIYTIRWS 449 (502)
Q Consensus 420 g~i~iwd--~~~~~~~~~~~-~h~~~i~~v~~s 449 (502)
+.|.+|+ ..++++..... .+...+.+|+|.
T Consensus 328 ~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 328 NVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 8999964 45777654432 344568899986
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=149.31 Aligned_cols=228 Identities=13% Similarity=-0.036 Sum_probs=153.5
Q ss_pred ceEEeccCCCceEE-----EEEcCCCCeEEEEeC-CCc--EEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE
Q 010754 207 DVTILEGHTSEVCA-----CAWSPAGSLLASGSG-DST--ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278 (502)
Q Consensus 207 ~~~~l~~H~~~V~~-----~~~~p~~~~l~sgs~-dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 278 (502)
.++.|..|...+.. .+|+|||++|+.++. ++. |.+||+.+++... ....+...+.
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-----------------lt~~~~~~~~ 84 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-----------------LTEGRGDNTF 84 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-----------------CCCSSCBCSS
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-----------------eeeCCCCCcc
Confidence 45667777766666 899999999998887 674 7778887764211 1112223344
Q ss_pred EEEECCCCCEEEEEECCCeEEEEECCCceEE-EecCccCCeEEEE--EecCCCEEEEE----------------------
Q 010754 279 TLDWNGEGTLLATGSYDGQARIWSTNGDLKC-TLSKHKGPIFSLK--WNKKGDYLLTG---------------------- 333 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~v~~l~--~~~~~~~l~s~---------------------- 333 (502)
.+.|+|||+.|+.++.++.|++||+.+.... .+..+...+.... ++|++.+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 6789999999999999999999998764433 3344444443344 48999988743
Q ss_pred ecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CCE-EEEEeCC------CeEEEEEcCCCcceEEEecCC--CcEEE
Q 010754 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVS-FATSSTD------NMIYVCKIGENRPIKTFAGHQ--GEVNC 403 (502)
Q Consensus 334 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~-~~~~~~d------~~i~i~d~~~~~~~~~~~~h~--~~i~~ 403 (502)
..+..|.+||+.+++... +..+...+..+.|+| ++. ++.+..+ ..|.++|...+.. ..+..+. ..+..
T Consensus 165 ~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTH 242 (388)
T ss_dssp CCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEE
T ss_pred CCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccccc
Confidence 234689999999987544 445666789999999 655 5555543 3788888766544 3444343 35788
Q ss_pred EEEcCCCCEEEEEeC-CC----cEEEEECCCCee--EEEeccCCCc---EEEEEEccCCC
Q 010754 404 VKWDPTGSLLASCSD-DV----TAKIWNMKQDKY--VHDLREHSKE---IYTIRWSPTGS 453 (502)
Q Consensus 404 l~~sp~g~~las~s~-dg----~i~iwd~~~~~~--~~~~~~h~~~---i~~v~~sp~g~ 453 (502)
+.|+|+|+.|+..+. ++ .|++||+.+++. +..+.++... ...++|+|||.
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~ 302 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGS 302 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCC
Confidence 999999997765543 22 399999998874 3333331111 11237999998
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-16 Score=164.42 Aligned_cols=243 Identities=7% Similarity=-0.001 Sum_probs=169.2
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEE--eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeE--------
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASG--SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT-------- 278 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sg--s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------- 278 (502)
..+.+|...|..++|++++-++++. +.++...||....+.....+ ..+...+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l-----------------~~~~~~~~~~~~~~~~ 79 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESA-----------------LPAPWNVRNRVFEYSG 79 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEES-----------------SCTTCCBCCCGGGTCC
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCccee-----------------CCCCccccccccccCC
Confidence 4577899999999999887777777 56889999996433211111 11112222
Q ss_pred -EEEEC--CCCCE-EEEEEC-CCeEEEEECC--C-ceEEEecC-----ccCCeEEEEEecCCCEEEEEecC---------
Q 010754 279 -TLDWN--GEGTL-LATGSY-DGQARIWSTN--G-DLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCD--------- 336 (502)
Q Consensus 279 -~l~~s--~~g~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~-----~~~~v~~l~~~~~~~~l~s~~~d--------- 336 (502)
...|+ |||+. |+.++. +..|.+|++. + .....+.. |...+.+++|+|+|+.|++++.+
T Consensus 80 ~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 80 FPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred ccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 44555 99998 776654 5678888876 3 55555555 66778999999999999988877
Q ss_pred -CeEEEEEcCC------CceEEEEe-eccCCeEEEEecCCCE-EEEEeCC--------CeEEEEEcC-CC---cceEEEe
Q 010754 337 -KTAIVWDVKT------EEWKQQFE-FHSGPTLDVDWRNNVS-FATSSTD--------NMIYVCKIG-EN---RPIKTFA 395 (502)
Q Consensus 337 -~~i~~wd~~~------~~~~~~~~-~~~~~v~~v~~~~~~~-~~~~~~d--------~~i~i~d~~-~~---~~~~~~~ 395 (502)
..|++||+.+ +.. ..+. .+...+..+.|+|++. ++.++.+ ..|++||+. ++ .......
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999987 554 3444 4455677889998875 5555544 479999998 56 4444455
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEeccCCCc--------EEEEEEccCCCCCCCCCccEEEE
Q 010754 396 GHQGEVNCVKWDPTGSLLASCSDDV--TAKIWNMKQDKYVHDLREHSKE--------IYTIRWSPTGSGTNNPNQQLILA 465 (502)
Q Consensus 396 ~h~~~i~~l~~sp~g~~las~s~dg--~i~iwd~~~~~~~~~~~~h~~~--------i~~v~~sp~g~~~~~~~~~l~la 465 (502)
+|...+..+.|+|||+++++++.++ .|.+||+.+++.......+... +.+++|+|+|. .++++
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-------~~~~~ 311 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-------IAVVH 311 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-------EEEEE
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-------EEEEE
Confidence 5678899999999999888888888 5666776677655443333221 45678888876 55555
Q ss_pred eecCceEEEEee
Q 010754 466 RLIPYFLYWICS 477 (502)
Q Consensus 466 s~~~~~~iw~~~ 477 (502)
+. +..++|..+
T Consensus 312 ~~-~~~~l~~~d 322 (662)
T 3azo_A 312 GK-GAAVLGILD 322 (662)
T ss_dssp BS-SSCEEEEEE
T ss_pred Ec-CccEEEEEE
Confidence 55 888888654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=160.58 Aligned_cols=247 Identities=9% Similarity=-0.050 Sum_probs=167.7
Q ss_pred ceEEeccCCCceE---------EEEEc--CCCCe-EEEEeC-CCcEEEEecC--C-CCccCCCCCCCceeEEEeeecCc-
Q 010754 207 DVTILEGHTSEVC---------ACAWS--PAGSL-LASGSG-DSTARIWTIA--D-GTSNGGAQNGPLNVLVLKHVKGR- 269 (502)
Q Consensus 207 ~~~~l~~H~~~V~---------~~~~~--p~~~~-l~sgs~-dg~v~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~- 269 (502)
..+.+..|...|. ...|+ |||+. |+.++. +..|.+|++. . +... .+...
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~--------------~l~~~~ 124 (662)
T 3azo_A 59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR--------------PLTPVS 124 (662)
T ss_dssp CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCE--------------ECSCCC
T ss_pred CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCE--------------eccCCc
Confidence 3455666666655 56666 99988 776654 4556666654 2 2210 01000
Q ss_pred cccCCCCeEEEEECCCCCEEEEEECC----------CeEEEEECCC------ceEEEec-CccCCeEEEEEecCCCEEEE
Q 010754 270 TNEKSKDVTTLDWNGEGTLLATGSYD----------GQARIWSTNG------DLKCTLS-KHKGPIFSLKWNKKGDYLLT 332 (502)
Q Consensus 270 ~~~~~~~v~~l~~s~~g~~l~s~~~d----------g~i~iwd~~~------~~~~~~~-~~~~~v~~l~~~~~~~~l~s 332 (502)
...+...+..++|+|||+.|++++.+ ..|++|++.+ .....+. .+...+..++|+|+|++|+.
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~ 204 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVW 204 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEE
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEE
Confidence 00134468899999999999998876 5899999987 6666666 66677888999999999998
Q ss_pred EecCC--------eEEEEEcC-CC---ceEEEEeeccCCeEEEEecCCCE-EEEEeCCC--eEEEEEcCCCcceEEEecC
Q 010754 333 GSCDK--------TAIVWDVK-TE---EWKQQFEFHSGPTLDVDWRNNVS-FATSSTDN--MIYVCKIGENRPIKTFAGH 397 (502)
Q Consensus 333 ~~~d~--------~i~~wd~~-~~---~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~--~i~i~d~~~~~~~~~~~~h 397 (502)
++.++ .|++||+. ++ ........+...+..+.|++++. ++++..++ .|++||+.+++.......+
T Consensus 205 ~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 284 (662)
T 3azo_A 205 LAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRRE 284 (662)
T ss_dssp EEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCS
T ss_pred EECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccc
Confidence 77553 79999998 56 44444444578899999998765 44555667 6777777666544333333
Q ss_pred CCc--------EEEEEEcCCCCEEEEEeCCCcEEEE--ECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee
Q 010754 398 QGE--------VNCVKWDPTGSLLASCSDDVTAKIW--NMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL 467 (502)
Q Consensus 398 ~~~--------i~~l~~sp~g~~las~s~dg~i~iw--d~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~ 467 (502)
... +..++|+|+++++++++. +.++|| |+.+++ +..+..|...+..+ |++++. .+++.+.
T Consensus 285 ~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~-------~~~~~~~ 354 (662)
T 3azo_A 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGT-------RAVGVAA 354 (662)
T ss_dssp SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETT-------EEEEEEE
T ss_pred ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCC-------EEEEEEc
Confidence 222 567899999999999999 999999 555555 67777777777766 255554 3444444
Q ss_pred c--CceEEEEee
Q 010754 468 I--PYFLYWICS 477 (502)
Q Consensus 468 ~--~~~~iw~~~ 477 (502)
+ ....+|.++
T Consensus 355 ~~~~~~~i~~~d 366 (662)
T 3azo_A 355 SPRTAYEVVELD 366 (662)
T ss_dssp ETTEEEEEEEEE
T ss_pred CCCCCCEEEEEE
Confidence 3 345677654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-15 Score=157.56 Aligned_cols=223 Identities=12% Similarity=0.081 Sum_probs=162.1
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCC-----cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+|...+..++|||||++||.++.++ .|++||+.+++... .... ...+..++|+|||+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~---------~~~~---------~~~~~~~~wspDg~ 183 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------DVLE---------RVKFSCMAWTHDGK 183 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------EEEE---------EECSCCEEECTTSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCc---------cccc---------CcccceEEEEeCCC
Confidence 4556789999999999998776543 89999998875321 0000 11266799999999
Q ss_pred EEEEEECCCe----------------EEEEECCCce---EEEec--CccCCeEEEEEecCCCEEEEEec-----CCeEEE
Q 010754 288 LLATGSYDGQ----------------ARIWSTNGDL---KCTLS--KHKGPIFSLKWNKKGDYLLTGSC-----DKTAIV 341 (502)
Q Consensus 288 ~l~s~~~dg~----------------i~iwd~~~~~---~~~~~--~~~~~v~~l~~~~~~~~l~s~~~-----d~~i~~ 341 (502)
.|+.++.++. |++|++.+.. ...+. .+...+..+.|+|+|++|+.++. +..|++
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 9999988766 9999987532 23333 34556789999999999987765 678999
Q ss_pred EEcCC------Cc-eEEEEeeccCCeEEEEecCCCEEEEEeCC----CeEEEEEcCCCc--ceEEEecCCC--cEEEEEE
Q 010754 342 WDVKT------EE-WKQQFEFHSGPTLDVDWRNNVSFATSSTD----NMIYVCKIGENR--PIKTFAGHQG--EVNCVKW 406 (502)
Q Consensus 342 wd~~~------~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~~d----~~i~i~d~~~~~--~~~~~~~h~~--~i~~l~~ 406 (502)
||+.+ +. ....+..+...+......++..|+..+.. +.|.+||+.++. ....+..|.. .+..+.|
T Consensus 264 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~ 343 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC 343 (710)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEE
T ss_pred EECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEE
Confidence 99986 43 35556555555555433445556555443 369999998775 2355555644 6888999
Q ss_pred cCCCCEEEEEeCCCc--EEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 407 DPTGSLLASCSDDVT--AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 407 sp~g~~las~s~dg~--i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
++++.++++...|+. |++|++.+++.+..+..+.+.+..++++|++.
T Consensus 344 ~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~ 392 (710)
T 2xdw_A 344 VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT 392 (710)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred EcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCC
Confidence 988888889988885 66678777888888887888899999999886
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-14 Score=135.80 Aligned_cols=237 Identities=11% Similarity=0.064 Sum_probs=169.2
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.....+.++...+.+++|+|+|++++++..++.|.+||..+++.. ... ..+...+.+++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~-----------~~~------~~~~~~~~~i~~~~d 97 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-----------RPF------VSHKANPAAIKIHKD 97 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----------EEE------ECSSSSEEEEEECTT
T ss_pred ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE-----------EEe------eCCCCCcceEEECCC
Confidence 345667777788899999999998888888999999998776421 000 012356999999999
Q ss_pred CCEEEEEECC----CeEEEEECCCceEE-Eec--CccCCeEEEEEecCCCEEEEEec------CCeEEEEEcCCCceEEE
Q 010754 286 GTLLATGSYD----GQARIWSTNGDLKC-TLS--KHKGPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 286 g~~l~s~~~d----g~i~iwd~~~~~~~-~~~--~~~~~v~~l~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~ 352 (502)
|++++++..+ +.|.+||.++.... .+. .+...+.+++++|+|+.+++... .+.|..||..+++...
T Consensus 98 g~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~- 176 (333)
T 2dg1_A 98 GRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP- 176 (333)
T ss_dssp SCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-
T ss_pred CcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-
Confidence 9988877766 68999998765443 222 23457899999999987776653 3567777766555443
Q ss_pred EeeccCCeEEEEecCCCE-E-EEEeCCCeEEEEEcCC-CcceEEE--------ecCCCcEEEEEEcCCCCEEEEEeCCCc
Q 010754 353 FEFHSGPTLDVDWRNNVS-F-ATSSTDNMIYVCKIGE-NRPIKTF--------AGHQGEVNCVKWDPTGSLLASCSDDVT 421 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~~~-~-~~~~~d~~i~i~d~~~-~~~~~~~--------~~h~~~i~~l~~sp~g~~las~s~dg~ 421 (502)
+......+..++|++++. + ++...++.|++|++.+ +..+..+ .++ ..+..++++++|+++++...++.
T Consensus 177 ~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~ 255 (333)
T 2dg1_A 177 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGR 255 (333)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTE
T ss_pred eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCE
Confidence 333344578899988753 4 4445678999999964 3333211 122 46888999999999888888899
Q ss_pred EEEEECCCCeeEEEeccCCC------cEEEEEEccCCCCCCCCCccEEEEeecC
Q 010754 422 AKIWNMKQDKYVHDLREHSK------EIYTIRWSPTGSGTNNPNQQLILARLIP 469 (502)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~------~i~~v~~sp~g~~~~~~~~~l~las~~~ 469 (502)
|.+||. +++.+..+..+.. .+.+++|+|+|. .|++++..+
T Consensus 256 v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~-------~L~v~~~~g 301 (333)
T 2dg1_A 256 VLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTN-------QLIICSNDI 301 (333)
T ss_dssp EEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSC-------EEEEEEECG
T ss_pred EEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCC-------EEEEEeCcc
Confidence 999998 5666666654432 689999999976 566666654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=151.81 Aligned_cols=243 Identities=11% Similarity=0.024 Sum_probs=163.2
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE--EECCCCC
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL--DWNGEGT 287 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~s~~g~ 287 (502)
...+|...+..++|+|+|+.|+.++.++.|++||+.+++... +.. .+...+... .++++++
T Consensus 75 lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~-----------~~~------~~~~~~~~~~~~~~~dg~ 137 (388)
T 3pe7_A 75 LTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV-----------VYQ------VPAEWVGYGTWVANSDCT 137 (388)
T ss_dssp CCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE-----------EEE------CCTTEEEEEEEEECTTSS
T ss_pred eeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee-----------eee------chhhcccccceeECCCCC
Confidence 334566666678999999999999999999999998875311 000 112223333 3489999
Q ss_pred EEEEE----------------------ECCCeEEEEECCCceEEEecCccCCeEEEEEec-CCCEEEEEecC------Ce
Q 010754 288 LLATG----------------------SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCD------KT 338 (502)
Q Consensus 288 ~l~s~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d------~~ 338 (502)
+++.. ..++.|.+||+.+.....+..+...+..+.|+| +|+.|+.+..+ ..
T Consensus 138 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 138 KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 88743 244789999988777777777778899999999 99988877653 37
Q ss_pred EEEEEcCCCceEEEEeecc--CCeEEEEecCCCE-EEEEeC--CC---eEEEEEcCCCcc--eEEEecCCCc---EEEEE
Q 010754 339 AIVWDVKTEEWKQQFEFHS--GPTLDVDWRNNVS-FATSST--DN---MIYVCKIGENRP--IKTFAGHQGE---VNCVK 405 (502)
Q Consensus 339 i~~wd~~~~~~~~~~~~~~--~~v~~v~~~~~~~-~~~~~~--d~---~i~i~d~~~~~~--~~~~~~h~~~---i~~l~ 405 (502)
|.++|..++.... +..+. ..+..+.|+|++. ++..+. ++ .|++||+.+++. +..+.++... ...+.
T Consensus 218 l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 218 MWLINEDGTNMRK-VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp EEEEETTSCCCEE-SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred EEEEeCCCCceEE-eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 8888877655433 33333 2477889998765 444332 22 399999998874 3333331110 11237
Q ss_pred EcCCCCEEEEE---------eCCCcEEEEECCCCeeEEEeccCCC-----------cEEEEEEccCCCCCCCCCccEEEE
Q 010754 406 WDPTGSLLASC---------SDDVTAKIWNMKQDKYVHDLREHSK-----------EIYTIRWSPTGSGTNNPNQQLILA 465 (502)
Q Consensus 406 ~sp~g~~las~---------s~dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~v~~sp~g~~~~~~~~~l~la 465 (502)
|+|+|+.|+.. ..+..|++||+.+++. ..+..+.. .+.+++|+|||+ .++.+
T Consensus 297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~-------~l~~~ 368 (388)
T 3pe7_A 297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDK-------QILFT 368 (388)
T ss_dssp EEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSS-------EEEEE
T ss_pred EccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCC-------EEEEE
Confidence 99999988754 4567899999998775 34554554 578899999998 56655
Q ss_pred ee-cCceEEEEeee
Q 010754 466 RL-IPYFLYWICSI 478 (502)
Q Consensus 466 s~-~~~~~iw~~~~ 478 (502)
+. ++...+|..++
T Consensus 369 s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 369 SDVHGKPALYLATL 382 (388)
T ss_dssp ECTTSSCEEEEEEC
T ss_pred ecCCCceeEEEEEC
Confidence 53 56777887554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-14 Score=139.63 Aligned_cols=221 Identities=10% Similarity=0.086 Sum_probs=150.1
Q ss_pred CceEEEEEcCCCCeEEEEeCC---Cc--EEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 216 SEVCACAWSPAGSLLASGSGD---ST--ARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~d---g~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
..+..++|+|||++||.++.+ +. |.+|++.+++.. .+.. ... +..++|+|+|+.|+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~-----------~l~~-------~~~-~~~~~wspdg~~l~ 119 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSK-----------KILE-------AKN-IRSLEWNEDSRKLL 119 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEE-----------EEEE-------ESE-EEEEEECTTSSEEE
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceE-----------EEEc-------CCC-ccceeECCCCCEEE
Confidence 568899999999999888754 33 777777665321 1110 112 88999999999988
Q ss_pred EEECC---------------------------CeEEEEECCCceE-EEecCccCCeEEEEEecCCCEEEEEecCC-----
Q 010754 291 TGSYD---------------------------GQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDK----- 337 (502)
Q Consensus 291 s~~~d---------------------------g~i~iwd~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~d~----- 337 (502)
.++.+ ..|.+||+.+... ..+.. . .+..+.|+|+| .++++..++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~ 196 (347)
T 2gop_A 120 IVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQY 196 (347)
T ss_dssp EEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCS
T ss_pred EEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccc
Confidence 88642 5788999876554 55544 4 78999999999 777776542
Q ss_pred --eEEEEEcCCCceEEEEeeccCCeEEEEecCCC-EEEEEeCC--------CeEEEEEcCCCcceEEEecCCCcEEE-EE
Q 010754 338 --TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTD--------NMIYVCKIGENRPIKTFAGHQGEVNC-VK 405 (502)
Q Consensus 338 --~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d--------~~i~i~d~~~~~~~~~~~~h~~~i~~-l~ 405 (502)
...||.+.+++. ..+..+ ..+..+ +|++ .++.++.+ ..|++|| +++......++...+.. +.
T Consensus 197 ~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~ 270 (347)
T 2gop_A 197 FKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKI 270 (347)
T ss_dssp SCCEEEEEEETTEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEE
T ss_pred cccccEEEeCCCce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccE
Confidence 344444445554 334334 455555 5444 46665543 4688888 55544444556677886 99
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCce-EEEEee
Q 010754 406 WDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYF-LYWICS 477 (502)
Q Consensus 406 ~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~-~iw~~~ 477 (502)
|+ ++ ++++++.++.++|| +.+++... +..+...|.+++|+| . .+++++.+... .+|.++
T Consensus 271 ~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~-------~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 271 KD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--I-------VVYLKETATRLRELFTWD 330 (347)
T ss_dssp ET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--S-------EEEEEECSSSCCEEEEES
T ss_pred Ec-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--c-------EEEEEcCCCChHHheEeC
Confidence 99 88 99999999999999 88666543 444577899999999 4 44555555554 788764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=135.51 Aligned_cols=230 Identities=10% Similarity=0.062 Sum_probs=164.5
Q ss_pred ceEEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
.+..+..+.....+++|+|+++ +++++..++.|..|+..++ .. . +. .+...+.+++++++
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~-----------~---~~----~~~~~~~~l~~~~d 79 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS-----------P---EM----HPSHHQNGHCLNKQ 79 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE-----------E---EE----SSCSSEEEEEECTT
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE-----------E---EE----CCCCCcceeeECCC
Confidence 4456666777788999999998 8888888999999998764 10 0 11 12356899999999
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCc----cCCeEEEEEecCCCEEEEE----e-------------cCCeEEEEE
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKH----KGPIFSLKWNKKGDYLLTG----S-------------CDKTAIVWD 343 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~----~~~v~~l~~~~~~~~l~s~----~-------------~d~~i~~wd 343 (502)
|+++++...++.|.+||.. +......... ...+..++++|+|+++++. + ..+.|..++
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 9988777777899999984 4433222211 2346789999999988873 2 134566666
Q ss_pred cCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCCCeEEEEEcC-CCcc---eEEEecCCCcEEEEEEcCCCCEEEEEeC
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIG-ENRP---IKTFAGHQGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~-~~~~---~~~~~~h~~~i~~l~~sp~g~~las~s~ 418 (502)
.. ++ ...+..+......++|++++. +++.+.++.|++|++. .+.. ...+..+...+.+++++++|+++++.
T Consensus 160 ~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-- 235 (296)
T 3e5z_A 160 PD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-- 235 (296)
T ss_dssp TT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred CC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence 54 44 344445566778999988765 5555667899999997 4443 23343345567789999999977766
Q ss_pred CCcEEEEECCCCeeEEEeccCCCcEEEEEE-ccCCCCCCCCCccEEEEeec
Q 010754 419 DVTAKIWNMKQDKYVHDLREHSKEIYTIRW-SPTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 419 dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~-sp~g~~~~~~~~~l~las~~ 468 (502)
++.|.+||.. ++.+..+..+.. +++++| +|++. .|++++.+
T Consensus 236 ~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~-------~L~v~t~~ 277 (296)
T 3e5z_A 236 GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGR-------TLYMTVST 277 (296)
T ss_dssp TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSC-------EEEEEETT
T ss_pred CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCC-------EEEEEcCC
Confidence 7889999986 788888877777 899999 57876 56666654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-14 Score=138.12 Aligned_cols=194 Identities=10% Similarity=0.102 Sum_probs=136.8
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECC--CceEEEecCcc--CCeEEEEEecCCCE--EEEEe-------------c
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTN--GDLKCTLSKHK--GPIFSLKWNKKGDY--LLTGS-------------C 335 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~--~~v~~l~~~~~~~~--l~s~~-------------~ 335 (502)
..+..++|+|+|++|++++.+ .|.+|++. +...... .+. +.+.+++|+|+|++ +++++ .
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF 117 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence 357889999999999999987 99999975 4433222 121 33566899999994 44553 6
Q ss_pred CCeEEEEEcC-CCceEEEEee----ccCCeEEEEecCCCE-EEEEe-CCCeEEEEEcC-CCcce--EEEe--cCCCcEEE
Q 010754 336 DKTAIVWDVK-TEEWKQQFEF----HSGPTLDVDWRNNVS-FATSS-TDNMIYVCKIG-ENRPI--KTFA--GHQGEVNC 403 (502)
Q Consensus 336 d~~i~~wd~~-~~~~~~~~~~----~~~~v~~v~~~~~~~-~~~~~-~d~~i~i~d~~-~~~~~--~~~~--~h~~~i~~ 403 (502)
++++.+|++. .++....+.. +...+..+.|+|++. ++++. .++.|++|++. +++.. ..+. .|...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999997 4665544432 456789999998875 55444 46899999998 66542 3343 24567999
Q ss_pred EEEcCCCCEEEEEeC-CCcEEEEECC--CCeeE---EEe---c----cCCC------cEEEEE-EccCCCCCCCCCccEE
Q 010754 404 VKWDPTGSLLASCSD-DVTAKIWNMK--QDKYV---HDL---R----EHSK------EIYTIR-WSPTGSGTNNPNQQLI 463 (502)
Q Consensus 404 l~~sp~g~~las~s~-dg~i~iwd~~--~~~~~---~~~---~----~h~~------~i~~v~-~sp~g~~~~~~~~~l~ 463 (502)
++|+|+|++|++++. ++.|.+|++. ++++. ..+ . +|.. .+..++ |+|||+ .++
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-------~l~ 270 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-------YMF 270 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-------EEE
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC-------EEE
Confidence 999999999988775 7899999865 56542 122 1 1222 588999 999998 555
Q ss_pred EEeecC------ceEEEEee
Q 010754 464 LARLIP------YFLYWICS 477 (502)
Q Consensus 464 las~~~------~~~iw~~~ 477 (502)
++..+. .+.+|...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp EEEEESSTTSCCEEEEEEEC
T ss_pred EECCCCCCCCCCeEEEEEEC
Confidence 555443 68888653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-15 Score=155.90 Aligned_cols=221 Identities=10% Similarity=0.067 Sum_probs=157.9
Q ss_pred cCCCceEEEEEcCCCCeEE-----EEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 213 GHTSEVCACAWSPAGSLLA-----SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~-----sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+|...+..++|||||++|| .|+.+.+|++||+.+++.... .... ......++|+|||+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~---------------~~~~--~~~~~~~~wspDg~ 180 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV---------------DVIE--GGKYATPKWTPDSK 180 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS---------------CCBS--CCTTCCCEECTTSS
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC---------------cccC--cccccceEEecCCC
Confidence 5667899999999999998 444457899999998764200 0000 11126789999999
Q ss_pred EEEEEECCCe-------------EEEEECCCce-----EEEecCccCCeEEEEEecCCCEEEEEecCC----eEEEEEcC
Q 010754 288 LLATGSYDGQ-------------ARIWSTNGDL-----KCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----TAIVWDVK 345 (502)
Q Consensus 288 ~l~s~~~dg~-------------i~iwd~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~----~i~~wd~~ 345 (502)
.|+.++.+.. |++|++.+.. +.....+...+.++.|+|+|++|+.++.++ .|++||..
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 9999998776 9999987432 223334556789999999999998877666 67777766
Q ss_pred CCceEEEEeeccCCeEEEEecCCCEEEEEeC----CCeEEEEEcCCCcc--eEEEecC--CCcEEEEEEcCCCCEEEEEe
Q 010754 346 TEEWKQQFEFHSGPTLDVDWRNNVSFATSST----DNMIYVCKIGENRP--IKTFAGH--QGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 346 ~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~----d~~i~i~d~~~~~~--~~~~~~h--~~~i~~l~~sp~g~~las~s 417 (502)
++.. ..+..+...+....|.++. ++..+. ++.|.+||+.++.. ...+..+ ...+..++|+ ++.++++..
T Consensus 261 ~~~~-~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 261 EKDF-RLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp CSSC-EEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred CCce-EEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 5554 4445555566666676666 555543 57899999987753 2344333 4568889998 778889999
Q ss_pred CCCcEEEEECC-CCeeEEEeccC-CCcEEEEEEccCCC
Q 010754 418 DDVTAKIWNMK-QDKYVHDLREH-SKEIYTIRWSPTGS 453 (502)
Q Consensus 418 ~dg~i~iwd~~-~~~~~~~~~~h-~~~i~~v~~sp~g~ 453 (502)
.|+..+||.+. +++.+..+..+ .+.|..++|+|++.
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 375 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLD 375 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCS
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCC
Confidence 99998888665 46666666655 66788889999886
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=6.3e-14 Score=135.57 Aligned_cols=229 Identities=10% Similarity=0.109 Sum_probs=149.0
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEe----------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCe
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (502)
+..+..+..+ .++|+|+|++|++++ .+++|.+||+.+.+.... +...... ..+....
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~----------i~~~~~~-~~~g~~p 110 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE----------ISLPPKR-VQGLNYD 110 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE----------EEECTTB-CCBCCCG
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE----------EEcCccc-cccCCCc
Confidence 3445555555 899999999999886 367899999887653211 1101000 1122456
Q ss_pred EEEEECCCCCEEEEEEC--CCeEEEEECCCceEEEe-cCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCC-CceE--
Q 010754 278 TTLDWNGEGTLLATGSY--DGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKT-EEWK-- 350 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~-~~~~-- 350 (502)
..++++|+|++|+++.. ++.|.+||+........ ....+ ...+.+.|++ ..+++.+.||.+.+|++.. ++..
T Consensus 111 ~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~ 189 (361)
T 2oiz_A 111 GLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ 189 (361)
T ss_dssp GGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred ceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence 78999999999999874 58999999876544332 22221 1223334433 3444444555555554432 2211
Q ss_pred -----------------------------------------------EEEeecc----------CCeEEEEecCC-CEEE
Q 010754 351 -----------------------------------------------QQFEFHS----------GPTLDVDWRNN-VSFA 372 (502)
Q Consensus 351 -----------------------------------------------~~~~~~~----------~~v~~v~~~~~-~~~~ 372 (502)
..+.... .....+.++++ ..++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY 269 (361)
T ss_dssp EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence 1110000 00001445554 4444
Q ss_pred EEeC-----------CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEeccC
Q 010754 373 TSST-----------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD--KYVHDLREH 439 (502)
Q Consensus 373 ~~~~-----------d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~--~~~~~~~~h 439 (502)
++.. .+.|.+||+.+++.+.++..+. +.+|+|+|+|++|++++. +.|.+||..++ +.+..+..+
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~ 346 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA 346 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS
T ss_pred EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC
Confidence 4322 3589999999999999998877 999999999999998887 99999999999 999998777
Q ss_pred CCcEEEEEEccCCC
Q 010754 440 SKEIYTIRWSPTGS 453 (502)
Q Consensus 440 ~~~i~~v~~sp~g~ 453 (502)
......++++|+|.
T Consensus 347 G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 347 AEASLQVQFHPVGG 360 (361)
T ss_dssp CSSEEEEEECCCSC
T ss_pred CCCcEEEEecCCCC
Confidence 77889999999985
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=148.66 Aligned_cols=214 Identities=9% Similarity=-0.042 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCeEEEEeCC---CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 218 VCACAWSPAGSLLASGSGD---STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
+..++|+|+|++|+.++.. ..|.+|++.+++... +. .........+.|+|+|+.|+.++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------l~---~~~~~~~~~~~~spdg~~l~~~~~ 100 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------LT---EGKGDNTFGGFISTDERAFFYVKN 100 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------CC---CSSCBCTTTCEECTTSSEEEEEET
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------ee---cCCCCccccceECCCCCEEEEEEc
Confidence 7788999999998877553 368888887754211 10 011112233789999999999999
Q ss_pred CCeEEEEECCCceEEEe-cCccCCeEE-------------------EEEecCCCEEEEE-----ecCCeEEEEEcCCCce
Q 010754 295 DGQARIWSTNGDLKCTL-SKHKGPIFS-------------------LKWNKKGDYLLTG-----SCDKTAIVWDVKTEEW 349 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~-~~~~~~v~~-------------------l~~~~~~~~l~s~-----~~d~~i~~wd~~~~~~ 349 (502)
++.|++|++.+.....+ ..+...... +.|+|+++.++.+ ..+..|++||+.+++.
T Consensus 101 ~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL 180 (396)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence 99999999876543333 223322222 3467777766544 3567899999998876
Q ss_pred EEEEeeccCCeEEEEecC-CC-EEEEEeCC------CeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCCCEEEEEeCC
Q 010754 350 KQQFEFHSGPTLDVDWRN-NV-SFATSSTD------NMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 350 ~~~~~~~~~~v~~v~~~~-~~-~~~~~~~d------~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g~~las~s~d 419 (502)
.... .+...+..+.|++ ++ .++..+.+ ..|.+|++..+... .+..+ ...+..++|+|+|++|+.++.+
T Consensus 181 ~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~ 258 (396)
T 3c5m_A 181 EVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYF 258 (396)
T ss_dssp EEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEE
T ss_pred Eeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecC
Confidence 5544 4666788999988 44 46555543 46888998765533 33323 2358889999999988777554
Q ss_pred -----CcEEEEECCCCeeEEEeccCCCcEEEEEEcc-CCC
Q 010754 420 -----VTAKIWNMKQDKYVHDLREHSKEIYTIRWSP-TGS 453 (502)
Q Consensus 420 -----g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp-~g~ 453 (502)
+.|++||+.+++...... .. ... +.|+| +|.
T Consensus 259 ~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~ 295 (396)
T 3c5m_A 259 KGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGS 295 (396)
T ss_dssp TTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSS
T ss_pred CCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCc
Confidence 449999998886543322 11 133 89999 987
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-14 Score=130.60 Aligned_cols=234 Identities=9% Similarity=-0.032 Sum_probs=159.5
Q ss_pred ceEEEEEcCCCCeEE-EEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 217 EVCACAWSPAGSLLA-SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~-sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
...+++++|+|++++ +.+.++.|.+|+..+..... . .......+.+++++++|+++++.. +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~--------------~---~~~~~~~p~~i~~~~~g~l~v~~~-~ 86 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV--------------L---PFNGLYQPQGLAVDGAGTVYVTDF-N 86 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE--------------C---CCCSCCSCCCEEECTTCCEEEEET-T
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce--------------E---eeCCcCCcceeEECCCCCEEEEcC-C
Confidence 577899999999777 54678899999865432110 0 011224578899999999666555 8
Q ss_pred CeEEEEECCCceEEEecC-ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEE-EE
Q 010754 296 GQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-AT 373 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~-~~ 373 (502)
+.|.+||..+.....+.. ....+.+++++++|+.+++...++.|.+|+..+.............+..+++.+++.+ ++
T Consensus 87 ~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 166 (270)
T 1rwi_B 87 NRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVT 166 (270)
T ss_dssp TEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEE
T ss_pred CEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEE
Confidence 899999988765554432 2356899999999997777777899999986655433222222235677888765554 44
Q ss_pred EeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 374 ~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
...++.|.+|+............+...+.+|+++++|.++++...++.|.+|+............+...+.+++++|+|.
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 167 DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC
T ss_pred ECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC
Confidence 45678999999877654433333446789999999998888888889999999876554432223345689999999987
Q ss_pred CCCCCCccEEEEeecCceEEEE
Q 010754 454 GTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 454 ~~~~~~~~l~las~~~~~~iw~ 475 (502)
.++..+.++.+.++.
T Consensus 247 -------l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 247 -------VYVADRGNDRVVKLT 261 (270)
T ss_dssp -------EEEEEGGGTEEEEEC
T ss_pred -------EEEEECCCCEEEEEc
Confidence 333334445555553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-15 Score=147.64 Aligned_cols=260 Identities=9% Similarity=-0.042 Sum_probs=160.2
Q ss_pred ceEEeccCCCc-eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCC--CCeEEEEEC
Q 010754 207 DVTILEGHTSE-VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKS--KDVTTLDWN 283 (502)
Q Consensus 207 ~~~~l~~H~~~-V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~s 283 (502)
....+..+... ...+.|+|+|++|+.++.++.|.+|++.+++..........-...-..+........ .....+.|+
T Consensus 71 ~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s 150 (396)
T 3c5m_A 71 QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQ 150 (396)
T ss_dssp EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccC
Confidence 34444444443 334889999999999999999999999876532110000000000000000000000 000013578
Q ss_pred CCCCEEEEE-----ECCCeEEEEECCCceEEEecCccCCeEEEEEec-CCCEEEEEecC------CeEEEEEcCCCceEE
Q 010754 284 GEGTLLATG-----SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK-KGDYLLTGSCD------KTAIVWDVKTEEWKQ 351 (502)
Q Consensus 284 ~~g~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~s~~~d------~~i~~wd~~~~~~~~ 351 (502)
|+++.++.+ ..+..|.+||+.+.....+..+...+..+.|+| ++..|+.++.+ ..|.+||+.++....
T Consensus 151 pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 151 PLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp CCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE
T ss_pred CCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE
Confidence 888877655 356789999988765555556777899999999 78877766543 468889987665333
Q ss_pred EEeec-cCCeEEEEecCCCE-EEEEeCC-----CeEEEEEcCCCcceEEEecCCCcEEEEEEcC-CCCEEEEEe------
Q 010754 352 QFEFH-SGPTLDVDWRNNVS-FATSSTD-----NMIYVCKIGENRPIKTFAGHQGEVNCVKWDP-TGSLLASCS------ 417 (502)
Q Consensus 352 ~~~~~-~~~v~~v~~~~~~~-~~~~~~d-----~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp-~g~~las~s------ 417 (502)
..... ...+..+.|++++. ++..+.+ +.|++||+.+++...... ... .. +.|+| +|++|++++
T Consensus 231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC---
T ss_pred eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCccee
Confidence 22211 22477789988765 5555433 459999998876543332 212 33 89999 999988765
Q ss_pred ----------CCCcEEEEECCCCeeEEEeccCCC-----------cEEEEEEccCCCCCCCCCccEEEEee-cCceEEEE
Q 010754 418 ----------DDVTAKIWNMKQDKYVHDLREHSK-----------EIYTIRWSPTGSGTNNPNQQLILARL-IPYFLYWI 475 (502)
Q Consensus 418 ----------~dg~i~iwd~~~~~~~~~~~~h~~-----------~i~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~ 475 (502)
.++.|++||+.+++.. .+..+.. .+..++|+|+|. .++.++. ++...+|.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD-------GVLFTSDFEGVPAIYI 379 (396)
T ss_dssp -------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS-------EEEEEECTTSSCEEEE
T ss_pred eccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCC-------eEEEEecCCCCceEEE
Confidence 3478999999887753 3444443 256789999997 5665554 45667776
Q ss_pred ee
Q 010754 476 CS 477 (502)
Q Consensus 476 ~~ 477 (502)
.+
T Consensus 380 ~~ 381 (396)
T 3c5m_A 380 AD 381 (396)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.64 E-value=7e-14 Score=134.38 Aligned_cols=218 Identities=13% Similarity=0.076 Sum_probs=150.1
Q ss_pred ceEEEEEcCCCCeEEEEe---------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 217 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
.+...++ +|+.++... .++.|.+|++.+++.. . + ..+..++|+|||+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~---l--------~~~~~~~~SpDg~ 71 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-----------F---I--------ENATMPRISPDGK 71 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-----------E---E--------ESCEEEEECTTSS
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-----------E---c--------ccCCCeEECCCCC
Confidence 4566677 888777642 2567899998875421 1 1 2478999999999
Q ss_pred EEEEEECC---C--eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC--------------------------
Q 010754 288 LLATGSYD---G--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-------------------------- 336 (502)
Q Consensus 288 ~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-------------------------- 336 (502)
.|+.++.+ + .|.+|++.+.....+..+.. +..++|+|+|+.|+.++.+
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 99888754 3 47778887665555544444 9999999999999887643
Q ss_pred -CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCC------C-eEEEEEcCCCcceEEEecCCCcEEEEEEcC
Q 010754 337 -KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD------N-MIYVCKIGENRPIKTFAGHQGEVNCVKWDP 408 (502)
Q Consensus 337 -~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d------~-~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp 408 (502)
..|++||+.+++.+..+.. . .+..+.|++++.++++..+ . ...+|.+.+++ ...+..+ ..+..+ +|
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--sp 224 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DS 224 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EE
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CC
Confidence 5799999998887455554 3 7888999998844444433 1 33444443444 3444444 555554 99
Q ss_pred CCCEEEEEeCC--------CcEEEEECCCCeeEEEeccCCCcEEE-EEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 409 TGSLLASCSDD--------VTAKIWNMKQDKYVHDLREHSKEIYT-IRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 409 ~g~~las~s~d--------g~i~iwd~~~~~~~~~~~~h~~~i~~-v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+|++|+.++.+ ..|.+|| +++.......|...+.. +.|+ +| .+++++.++..++| ..
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--------~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--------VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--------EEEEEEETTEEEEE-EE
T ss_pred CCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--------EEEEEecCCcEEEE-Ec
Confidence 99998887754 3688888 66655555566778886 9998 64 35667777888888 64
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=152.01 Aligned_cols=225 Identities=13% Similarity=0.162 Sum_probs=151.8
Q ss_pred eEEeccCCCc-----eEEEEEcCCCCeEEEEeCC---------CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccC
Q 010754 208 VTILEGHTSE-----VCACAWSPAGSLLASGSGD---------STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273 (502)
Q Consensus 208 ~~~l~~H~~~-----V~~~~~~p~~~~l~sgs~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (502)
...+.+|... ...++|||||++|+.++.+ +.+.+||+.+++... ...+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~------------------l~~~ 110 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT------------------EERI 110 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC------------------SSCC
T ss_pred EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE------------------cccC
Confidence 4556666643 2347899999999999876 556799999875321 1223
Q ss_pred CCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEec--CccCCe-----------------EEEEEecCCCEEEEEe
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS--KHKGPI-----------------FSLKWNKKGDYLLTGS 334 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~v-----------------~~l~~~~~~~~l~s~~ 334 (502)
...+...+|||||+.||.+. ++.|++|+..+.....+. ++...+ ..+.|||||++|+.++
T Consensus 111 ~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~ 189 (740)
T 4a5s_A 111 PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ 189 (740)
T ss_dssp CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence 45699999999999999885 689999998754433332 332222 3589999999999875
Q ss_pred cCC------------------------------------eEEEEEcCC---Cc--eEEEEee------ccCCeEEEEecC
Q 010754 335 CDK------------------------------------TAIVWDVKT---EE--WKQQFEF------HSGPTLDVDWRN 367 (502)
Q Consensus 335 ~d~------------------------------------~i~~wd~~~---~~--~~~~~~~------~~~~v~~v~~~~ 367 (502)
.|. +|++||+.+ ++ ....+.. +...+..+.|+|
T Consensus 190 ~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp 269 (740)
T 4a5s_A 190 FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT 269 (740)
T ss_dssp EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE
T ss_pred EcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC
Confidence 332 588899988 73 2233332 556688999999
Q ss_pred CCEEEE-Ee----CCCeEEEEEcCCCc----c--eEEE--ecCCCcEE-----EEEEcCCCCEEE-EEeC-CC--cEEEE
Q 010754 368 NVSFAT-SS----TDNMIYVCKIGENR----P--IKTF--AGHQGEVN-----CVKWDPTGSLLA-SCSD-DV--TAKIW 425 (502)
Q Consensus 368 ~~~~~~-~~----~d~~i~i~d~~~~~----~--~~~~--~~h~~~i~-----~l~~sp~g~~la-s~s~-dg--~i~iw 425 (502)
++.+++ .. .+..|++||+.+++ + +..+ .+|...|. .+.|+|||+.|+ ..+. +| .|++|
T Consensus 270 dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 270 QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEE
Confidence 887433 22 23479999999887 1 2222 45665554 789999999877 6664 33 58889
Q ss_pred ECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 426 NMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 426 d~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
|+.+++.. .+....-.+..+.+ +||.
T Consensus 350 ~~~~~~~~-~lT~g~~~v~~~~~-~d~~ 375 (740)
T 4a5s_A 350 QIDKKDCT-FITKGTWEVIGIEA-LTSD 375 (740)
T ss_dssp ETTCSSCE-ESCCSSSCEEEEEE-ECSS
T ss_pred ECCCCceE-ecccCCEEEEEEEE-EeCC
Confidence 98876654 34434445666543 4444
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-13 Score=127.56 Aligned_cols=198 Identities=13% Similarity=0.146 Sum_probs=145.7
Q ss_pred cCCCceEEEEE-cCCCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 213 GHTSEVCACAW-SPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 213 ~H~~~V~~~~~-~p~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+|...+.++++ .+++.++++... ++.|.+|+ .+++.. ..+. ..+...+.+++++++|++++
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~-------------~~~~---~~~~~~~~~i~~~~~g~l~v 136 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFV-------------RKFG---ATILQHPRGVTVDNKGRIIV 136 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEE-------------EEEC---TTTCSCEEEEEECTTSCEEE
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEE-------------EEec---CccCCCceEEEEeCCCCEEE
Confidence 35567899999 567777777643 78999999 444321 1111 11234689999999999888
Q ss_pred EEECCCeEEEEECCCceEEEec--CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec--cCCeEEEEec
Q 010754 291 TGSYDGQARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGPTLDVDWR 366 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~v~~~ 366 (502)
+...++.|.+|+.++.....+. .+...+.+++++++|+.+++...++.|++||. .++.+..+... ...+..+++.
T Consensus 137 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d 215 (286)
T 1q7f_A 137 VECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGIN 215 (286)
T ss_dssp EETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEEC
T ss_pred EECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEEC
Confidence 8778899999998877666653 34456899999999987777778999999997 45666666543 2568889997
Q ss_pred CCCEEEEE-eCCC-eEEEEEcCCCcceEEEecCCC--cEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 367 NNVSFATS-STDN-MIYVCKIGENRPIKTFAGHQG--EVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 367 ~~~~~~~~-~~d~-~i~i~d~~~~~~~~~~~~h~~--~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
+++.++++ ..++ .|.+|+. .++.+..+..+.. .+.+++++|+|+++++ +.|+.|++|++...
T Consensus 216 ~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 216 SNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 76655544 4554 9999995 5666677765533 4789999999987777 57899999997654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-12 Score=123.67 Aligned_cols=227 Identities=9% Similarity=0.108 Sum_probs=157.6
Q ss_pred EeccCCCceEEEEEcCCCCeEEE-------EeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLAS-------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~s-------gs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
.+...-....+++|++++.++++ +..++.|.+|+..+++... ... ....++...+.++++
T Consensus 12 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-----------~~~--~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-----------ICK--PEVNGYGGIPAGCQC 78 (314)
T ss_dssp EEECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-----------EEC--CEETTEECCEEEEEE
T ss_pred hhhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-----------EEe--cccCCCCCCCceEEE
Confidence 34444556789999999988887 5678899999987665210 000 000112346899999
Q ss_pred CCC-CCEEEEEECCCeEEEEECCCceEEEe-cC-----ccCCeEEEEEecCCCEEEEEecC---------------CeEE
Q 010754 283 NGE-GTLLATGSYDGQARIWSTNGDLKCTL-SK-----HKGPIFSLKWNKKGDYLLTGSCD---------------KTAI 340 (502)
Q Consensus 283 s~~-g~~l~s~~~dg~i~iwd~~~~~~~~~-~~-----~~~~v~~l~~~~~~~~l~s~~~d---------------~~i~ 340 (502)
+++ |+++++ +..+.|.+||.++. ...+ .. ....+.+++++++|+.+++...+ +.|.
T Consensus 79 ~~~~g~l~v~-~~~~~l~~~d~~g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 79 DRDANQLFVA-DMRLGLLVVQTDGT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp CSSSSEEEEE-ETTTEEEEEETTSC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred ecCCCcEEEE-ECCCCEEEEeCCCC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 999 665554 44557999998844 3333 21 12357899999999887776655 5777
Q ss_pred EEEcCCCceEEEEeeccCCeEEEEec----CCC-EEE-EEeCCCeEEEEEcC-CCc-----ceEEEecCC-CcEEEEEEc
Q 010754 341 VWDVKTEEWKQQFEFHSGPTLDVDWR----NNV-SFA-TSSTDNMIYVCKIG-ENR-----PIKTFAGHQ-GEVNCVKWD 407 (502)
Q Consensus 341 ~wd~~~~~~~~~~~~~~~~v~~v~~~----~~~-~~~-~~~~d~~i~i~d~~-~~~-----~~~~~~~h~-~~i~~l~~s 407 (502)
.||.. ++... +.........+.|. +++ .++ +...++.|.+|+.. .+. ....+.++. ..+..++++
T Consensus 157 ~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 157 CFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 88765 55433 33334456788888 876 344 44567899999986 443 222333343 568899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 408 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 408 p~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
++|+++++...++.|.+||..+++.+..+..+...+.+++|+|+|.
T Consensus 235 ~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 235 EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp TTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS
T ss_pred CCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCC
Confidence 9999998888889999999987887777776767899999999986
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-13 Score=128.87 Aligned_cols=206 Identities=9% Similarity=0.081 Sum_probs=155.9
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCC-ccCCCCCCCceeEEEee--ecCccccCCCCeEEEEECC-CCCE
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT-SNGGAQNGPLNVLVLKH--VKGRTNEKSKDVTTLDWNG-EGTL 288 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~-~g~~ 288 (502)
++......++++|+|+++++.+.++.|++|+..... ... .+.. .......+......++++| +|.+
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~----------~~~~~~~~g~~~~~~~~P~~ia~~~~~g~l 157 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL----------ILGRSMQPGSDQNHFCQPTDVAVEPSTGAV 157 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE----------EESBTTBCCCSTTCCSSEEEEEECTTTCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE----------EecccCCCCCCccccCCCcEEEEeCCCCeE
Confidence 455678999999999999999889999999976432 111 0000 0011122344689999999 7888
Q ss_pred EEEEE-CCCeEEEEECCCceEEEecC----------ccCCeEEEEEecC-CCEEEEEecCCeEEEEEcCCCceEEEEee-
Q 010754 289 LATGS-YDGQARIWSTNGDLKCTLSK----------HKGPIFSLKWNKK-GDYLLTGSCDKTAIVWDVKTEEWKQQFEF- 355 (502)
Q Consensus 289 l~s~~-~dg~i~iwd~~~~~~~~~~~----------~~~~v~~l~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~- 355 (502)
+++.+ .++.|++|+.++.....+.. +-.....|+++|+ +..+++...++.|++||..+++.+..+..
T Consensus 158 yv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~ 237 (329)
T 3fvz_A 158 FVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA 237 (329)
T ss_dssp EEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred EEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence 88876 68999999988887776643 2234899999998 66777777889999999998998888743
Q ss_pred -ccCCeEEEEecCCCEEEEEe-------CCCeEEEEEcCCCcceEEEe---cCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 010754 356 -HSGPTLDVDWRNNVSFATSS-------TDNMIYVCKIGENRPIKTFA---GHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (502)
Q Consensus 356 -~~~~v~~v~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~---~h~~~i~~l~~sp~g~~las~s~dg~i~i 424 (502)
+...+..+.+.|+..+++.+ .+..|++|+..+++.+..+. ++...+..|+++|+|.++++...++.|++
T Consensus 238 ~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 238 SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence 45568889998833333332 24489999999999888873 56778999999999988888889999999
Q ss_pred EECC
Q 010754 425 WNMK 428 (502)
Q Consensus 425 wd~~ 428 (502)
|++.
T Consensus 318 ~~~~ 321 (329)
T 3fvz_A 318 FTLT 321 (329)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 9975
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-13 Score=123.49 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=159.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG 305 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~ 305 (502)
.+++|++++.|+.|.+||..+++... .+... ....+.++.++|+|++++ +.++.|..||.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w-------------~~~~~---~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVW-------------EYPLE---KGWECNSVAATKAGEILF--SYSKGAKMITRDG 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEE-------------EEECC---TTCCCCEEEECTTSCEEE--ECBSEEEEECTTS
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEE-------------EeCCC---ccCCCcCeEECCCCCEEE--eCCCCEEEECCCC
Confidence 46789999999999999998876422 11111 013578899999999888 4578899999988
Q ss_pred ceEEEecCc-cCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEEEEeecc------CCeEEEEecC-CCEEEEEeC
Q 010754 306 DLKCTLSKH-KGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS------GPTLDVDWRN-NVSFATSST 376 (502)
Q Consensus 306 ~~~~~~~~~-~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~------~~v~~v~~~~-~~~~~~~~~ 376 (502)
+.+..+..+ ...+.++.+.++|+++++.+. ++.|..+|. +++.+..+.... .....+...+ ++.+++...
T Consensus 66 ~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~ 144 (276)
T 3no2_A 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA 144 (276)
T ss_dssp CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT
T ss_pred CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC
Confidence 888888765 347889999999999999887 788888885 788777775322 1233344444 455777778
Q ss_pred CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC------CcEEEEEEcc
Q 010754 377 DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS------KEIYTIRWSP 450 (502)
Q Consensus 377 d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~------~~i~~v~~sp 450 (502)
++.|..||.. ++.+.++... ..+.++.+.++|+++++++.++.|..+|..+++.+..+..+. ..+..++..+
T Consensus 145 ~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 145 TSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp TTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 9999999998 9999888765 456677889999999999999999999999999998886432 2278888899
Q ss_pred CCC
Q 010754 451 TGS 453 (502)
Q Consensus 451 ~g~ 453 (502)
+|.
T Consensus 223 ~G~ 225 (276)
T 3no2_A 223 NGG 225 (276)
T ss_dssp TSC
T ss_pred CCC
Confidence 887
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-13 Score=125.00 Aligned_cols=207 Identities=11% Similarity=0.059 Sum_probs=149.2
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
...+..+...+.+++++|+|+++++...++.|.+|+..+++... . .... .......+..++++|+|+
T Consensus 61 ~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~---------~-~~~~---~~~~~~~~~~i~~d~~G~ 127 (296)
T 3e5z_A 61 LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES---------I-ADSF---EGKKLNSPNDVCLAPDGS 127 (296)
T ss_dssp EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE---------E-ECEE---TTEECCCCCCEEECTTSC
T ss_pred eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE---------E-eecc---CCCCCCCCCCEEECCCCC
Confidence 55666777889999999999988888778899999987665211 0 0000 011123577899999999
Q ss_pred EEEEE----E-------------CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcC-CCce
Q 010754 288 LLATG----S-------------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK-TEEW 349 (502)
Q Consensus 288 ~l~s~----~-------------~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~-~~~~ 349 (502)
++++. + ..+.|..++..+. ...+..+......++|+|+++.+++.+.++.|.+||+. ++..
T Consensus 128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGET 206 (296)
T ss_dssp EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCE
T ss_pred EEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcC
Confidence 88873 3 1346666666643 34445566677999999999988777778999999986 5554
Q ss_pred ---EEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEE-cCCCCEEEEEeCCCcEEEE
Q 010754 350 ---KQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 350 ---~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~-sp~g~~las~s~dg~i~iw 425 (502)
...+..+...+..+++.+++.+.++. ++.|.+|+.. ++.+..+..+.. +++++| +|+++.|++++.++ +.-+
T Consensus 207 ~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~ 282 (296)
T 3e5z_A 207 EYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSI 282 (296)
T ss_dssp EEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEE
T ss_pred cCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEE
Confidence 23332344456678888877777777 8999999986 777788887777 999999 68999998888764 5555
Q ss_pred ECCCCee
Q 010754 426 NMKQDKY 432 (502)
Q Consensus 426 d~~~~~~ 432 (502)
+..+.++
T Consensus 283 ~~~~~~~ 289 (296)
T 3e5z_A 283 ETNVRGL 289 (296)
T ss_dssp ECSCCBC
T ss_pred Ecccccc
Confidence 6666554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=3.9e-13 Score=130.01 Aligned_cols=212 Identities=10% Similarity=0.095 Sum_probs=136.5
Q ss_pred CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC----------CCeEEEEECC
Q 010754 235 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----------DGQARIWSTN 304 (502)
Q Consensus 235 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~----------dg~i~iwd~~ 304 (502)
.|+.|.+||..+++... .+.. ... - .++|+|+|++++++.. ++.|.+||..
T Consensus 29 ~d~~v~v~D~~t~~~~~-------------~i~~----g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLG-------------MVPT----AFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGCEEEEEETTTCCEEE-------------EEEC----CEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred ccCeEEEEECCCCeEEE-------------EecC----CCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 37899999988765321 1111 112 2 8999999999999873 5789999986
Q ss_pred C-ceEEEecC------ccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEE-EeeccCCeEEEEecC--CCEEE
Q 010754 305 G-DLKCTLSK------HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRN--NVSFA 372 (502)
Q Consensus 305 ~-~~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~-~~~~~~~v~~v~~~~--~~~~~ 372 (502)
. +....+.. +......++++|+|++|+++.. +++|.+||+.+++.+.. +... ....+.+.| ...++
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFM 167 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEE
Confidence 4 44444432 2245678999999999998874 58999999999987766 3211 111111222 12344
Q ss_pred EEeCCCeEEE------------------------------------------------EEcCCCcc--eEEEec------
Q 010754 373 TSSTDNMIYV------------------------------------------------CKIGENRP--IKTFAG------ 396 (502)
Q Consensus 373 ~~~~d~~i~i------------------------------------------------~d~~~~~~--~~~~~~------ 396 (502)
+.+.||.+.+ +|+..... +..+..
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 4444444444 44432211 111110
Q ss_pred CC----CcEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCcc
Q 010754 397 HQ----GEVNCVKWDPTGSLLASCSD-----------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 397 h~----~~i~~l~~sp~g~~las~s~-----------dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~ 461 (502)
+. .....++|+|+++.++.+.. .+.|.+||+.+++.+..+..+. +.+++|+|||+ .
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~-------~ 318 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRN-------L 318 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTT-------E
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCC-------E
Confidence 00 00112688999887766543 3479999999999999998776 89999999998 6
Q ss_pred EEEEeecCceEEEEee
Q 010754 462 LILARLIPYFLYWICS 477 (502)
Q Consensus 462 l~las~~~~~~iw~~~ 477 (502)
+++++. +.+.+|+..
T Consensus 319 l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEECS-SCEEEEECS
T ss_pred EEEeCC-CeEEEEECC
Confidence 666655 889999743
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-13 Score=129.94 Aligned_cols=230 Identities=10% Similarity=0.055 Sum_probs=158.1
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|.+++|+|++..++..+.++.++.|.- .. ...+ ..+...+.+++|+++|++++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~----~~~~~~~~~~~~~~~g~l~~~~~~~ 65 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---EP-------------WLEI----SKKGLQLEGLNFDRQGQLFLLDVFE 65 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---EE-------------EEEE----ESSCCCEEEEEECTTSCEEEEETTT
T ss_pred cccceeeecCCccceeEEeecccCccccc---ce-------------eEEE----eccCccccCcEECCCCCEEEEECCC
Confidence 34677889988877777778888888831 10 0111 1223457899999999988888889
Q ss_pred CeEEEEECCCceEEEe-cCccCCeEEEEEecCCCEEEEEecC----CeEEEEEcCCCceEEEEe--eccCCeEEEEecCC
Q 010754 296 GQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCD----KTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNN 368 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~ 368 (502)
+.|.+||..+.....+ ..+...+.+++|+|+|+++++...+ +.|.+||..++.....+. .....+.++.+.++
T Consensus 66 ~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~ 145 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK 145 (333)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT
T ss_pred CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC
Confidence 9999999876544433 3566789999999999887777666 689999998877654333 23346889999888
Q ss_pred CEEEEEeCC-------CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEECCC-CeeEE-----
Q 010754 369 VSFATSSTD-------NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQ-DKYVH----- 434 (502)
Q Consensus 369 ~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~la-s~s~dg~i~iwd~~~-~~~~~----- 434 (502)
+.++.+... +.|+.++..+++.. .+..+...+..++|+|+|++|+ +.+.++.|++||+.+ +..+.
T Consensus 146 g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~ 224 (333)
T 2dg1_A 146 GGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGAT 224 (333)
T ss_dssp SCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEE
T ss_pred CCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccce
Confidence 776666553 56666666554433 3333345688999999998654 455678999999864 33222
Q ss_pred ---EeccCCCcEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEE
Q 010754 435 ---DLREHSKEIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWI 475 (502)
Q Consensus 435 ---~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~ 475 (502)
.+.++ ..+..++++++|. +++++ .++.+.+|.
T Consensus 225 ~~~~~~~~-~~~~~i~~d~~G~--------l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 225 IPYYFTGH-EGPDSCCIDSDDN--------LYVAMYGQGRVLVFN 260 (333)
T ss_dssp EEEECCSS-SEEEEEEEBTTCC--------EEEEEETTTEEEEEC
T ss_pred EEEecCCC-CCCCceEECCCCC--------EEEEEcCCCEEEEEC
Confidence 11222 3678899999987 34443 346677775
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-11 Score=113.56 Aligned_cols=237 Identities=8% Similarity=-0.046 Sum_probs=166.6
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
+..+...+.++++.++|.++++...++.|.+|+.. +... . ... ......+.+++++++|.+++
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-----------~---~~~--~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-----------E---YPL--PTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-----------E---EEC--SSTTCCEEEEEECTTSCEEE
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-----------E---ecC--CcccCceeeEEECCCCCEEE
Confidence 33455779999999999988877668899999976 4311 0 000 01235689999999999888
Q ss_pred EEECCCeEEEEECCCceEEE-ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE-eeccCCeEEEEecCC
Q 010754 291 TGSYDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRNN 368 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~v~~~~~ 368 (502)
+...++.|..|+..+..... +......+.++++.+++..+++...++.|.+||. +++..... ......+..+.+.++
T Consensus 73 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 73 TENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD 151 (299)
T ss_dssp EETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred eCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence 87778999999987543222 2224557899999999988887777889999998 55544322 123456788888876
Q ss_pred CEEEEEe-CCCeEEEEEcCCCcceEE-EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eccCCCcEEE
Q 010754 369 VSFATSS-TDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYT 445 (502)
Q Consensus 369 ~~~~~~~-~d~~i~i~d~~~~~~~~~-~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~ 445 (502)
+.+..+. .++.|..||. +++.... +..+...+.+++++++|+++++...++.|.+||. +++.... +..+...+.+
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHA 229 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCcee
Confidence 6655544 5689999998 5554332 2334456889999999998887777889999998 6664332 2334567899
Q ss_pred EEEccCCCCCCCCCccEEEEe-ecCceEEEE
Q 010754 446 IRWSPTGSGTNNPNQQLILAR-LIPYFLYWI 475 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las-~~~~~~iw~ 475 (502)
++++++|. ++++. .++.+.+|.
T Consensus 230 i~~~~~g~--------l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 230 ITAGAGID--------LWFTEWGANKIGRLT 252 (299)
T ss_dssp EEECSTTC--------EEEEETTTTEEEEEE
T ss_pred EEECCCCC--------EEEeccCCceEEEEC
Confidence 99999987 34443 345566665
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=132.31 Aligned_cols=166 Identities=10% Similarity=0.059 Sum_probs=134.0
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCce-----------EEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEc
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDL-----------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~ 344 (502)
.+..+++++...++++|+.++ +.+|+++.-. ......+.. |+.|+| ++++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 589999999999999999875 5559843111 111223556 999999 88999998 8899999999
Q ss_pred CCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 010754 345 KTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~i 424 (502)
++.........+...+.++.+.+.. ++++..||.|.+||+.++.... +...|+|++|||+| ++.|..||++++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~ 186 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQS 186 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEE
T ss_pred hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEE
Confidence 8877766777788888888886654 8889999999999999877643 44679999999999 678999999999
Q ss_pred EECCCCee--EEEe------c---cCCCcEEEEEEccCCC
Q 010754 425 WNMKQDKY--VHDL------R---EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 425 wd~~~~~~--~~~~------~---~h~~~i~~v~~sp~g~ 453 (502)
|+...+.+ ..++ . +|...|.+|.|.+++.
T Consensus 187 ~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 187 FAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp EEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred EcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 99888775 5556 2 3778899999999876
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.8e-13 Score=140.57 Aligned_cols=221 Identities=15% Similarity=0.084 Sum_probs=152.2
Q ss_pred cCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 213 GHTSEVCACAWSPAGSLLASGSGD-----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+|...+..++|||||++||.++.+ .+|++||+.+++... .... ...+..++|+|| +
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~---------~~~~---------~~~~~~~~wspD-~ 220 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA---------DELK---------WVKFSGLAWLGN-D 220 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE---------EEEE---------EEESCCCEESTT-S
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC---------ccCC---------CceeccEEEECC-C
Confidence 455578899999999999887654 469999999876321 0000 011357899999 9
Q ss_pred EEEEEECCCe--------------EEEEECCCce---EEEecC--ccCCeEEEEEecCCCEEEEEecCC-----eEEEEE
Q 010754 288 LLATGSYDGQ--------------ARIWSTNGDL---KCTLSK--HKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWD 343 (502)
Q Consensus 288 ~l~s~~~dg~--------------i~iwd~~~~~---~~~~~~--~~~~v~~l~~~~~~~~l~s~~~d~-----~i~~wd 343 (502)
.|+.++.++. |++|++.+.. ...+.. +...+..+.|+|+|++|+..+.++ .|++||
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d 300 (741)
T 1yr2_A 221 ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVAR 300 (741)
T ss_dssp EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEE
T ss_pred EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEE
Confidence 9988887654 8899976432 233332 334588999999999998877544 899999
Q ss_pred cCCC--ceEEEEeeccCCeEEEEecCCCEEEEEeC----CCeEEEEEcCCC--cceEEEecCCCcEEEEEEcCCCCEEEE
Q 010754 344 VKTE--EWKQQFEFHSGPTLDVDWRNNVSFATSST----DNMIYVCKIGEN--RPIKTFAGHQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 344 ~~~~--~~~~~~~~~~~~v~~v~~~~~~~~~~~~~----d~~i~i~d~~~~--~~~~~~~~h~~~i~~l~~sp~g~~las 415 (502)
+.++ .+...+..+........+..+..|+..+. ++.|++||+.++ .....+..+...+..+.|+ ++.++++
T Consensus 301 ~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 301 VTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp EETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred CCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence 9877 41444554554455554556677776665 456999999874 3344455555567778887 6678888
Q ss_pred EeCCCcEEEEECC-CCeeEEEecc-CCCcEEEEEEccCCC
Q 010754 416 CSDDVTAKIWNMK-QDKYVHDLRE-HSKEIYTIRWSPTGS 453 (502)
Q Consensus 416 ~s~dg~i~iwd~~-~~~~~~~~~~-h~~~i~~v~~sp~g~ 453 (502)
...|+..+||.+. +++.+..+.. +.+.+..++|+|++.
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~ 419 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDR 419 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCS
T ss_pred EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCC
Confidence 8889987777654 4666666664 366789999999886
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-11 Score=115.90 Aligned_cols=228 Identities=10% Similarity=0.095 Sum_probs=157.6
Q ss_pred ccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 212 EGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
..+..-.-+..|+|+ +.++++...++.|..|+..++... .. .....+.+++++++|++++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~~--------~~~~~~~~i~~~~dG~l~v 69 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-----------RV--------TMDAPVSSVALRQSGGYVA 69 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-----------EE--------ECSSCEEEEEEBTTSSEEE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-----------EE--------eCCCceEEEEECCCCCEEE
Confidence 334445668899995 567777777899999998765421 00 0134689999999999555
Q ss_pred EEECCCeEEEEECCCceEEEecCc-----cCCeEEEEEecCCCEEEEEecC---------CeEEEEEcCC-CceEEEEee
Q 010754 291 TGSYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD---------KTAIVWDVKT-EEWKQQFEF 355 (502)
Q Consensus 291 s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~~~d---------~~i~~wd~~~-~~~~~~~~~ 355 (502)
+ . ++.|.+||.++.....+... ...+..++++|+|+++++.... ....+|.+.. ++. ..+..
T Consensus 70 ~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~ 146 (297)
T 3g4e_A 70 T-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFD 146 (297)
T ss_dssp E-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEE
T ss_pred E-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEee
Confidence 4 4 57899999875544433221 2347889999999966654322 2334554433 333 33333
Q ss_pred ccCCeEEEEecCCCE--EEEEeCCCeEEEEEcC--CCcc-----eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 356 HSGPTLDVDWRNNVS--FATSSTDNMIYVCKIG--ENRP-----IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~--~~~~-----~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
.......++|++++. +++.+.++.|.+|++. ++.. +..+..+...+..++++++|++.++....+.|.+||
T Consensus 147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d 226 (297)
T 3g4e_A 147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLD 226 (297)
T ss_dssp EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEEC
T ss_pred ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEc
Confidence 444567899988764 4555668899999973 4432 222333446788999999999888888888999999
Q ss_pred CCCCeeEEEeccCCCcEEEEEEc-cCCCCCCCCCccEEEEeec
Q 010754 427 MKQDKYVHDLREHSKEIYTIRWS-PTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 427 ~~~~~~~~~~~~h~~~i~~v~~s-p~g~~~~~~~~~l~las~~ 468 (502)
..+++.+..+..+...+++++|. |++. .|++++..
T Consensus 227 ~~tG~~~~~i~~p~~~~t~~~f~g~d~~-------~L~vt~~~ 262 (297)
T 3g4e_A 227 PVTGKRLQTVKLPVDKTTSCCFGGKNYS-------EMYVTCAR 262 (297)
T ss_dssp TTTCCEEEEEECSSSBEEEEEEESGGGC-------EEEEEEBC
T ss_pred CCCceEEEEEECCCCCceEEEEeCCCCC-------EEEEEcCC
Confidence 99999999888777789999998 8877 66666654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-12 Score=118.66 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=157.7
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
....+++. +++++++...++.|.+||..+++.+. .+. .......++++++++++++...++
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~-------------~i~-----~~~~p~~i~~~~~g~lyv~~~~~~ 105 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG-------------RIT-----GFTSPRYIHFLSDEKAYVTQIWDY 105 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE-------------EEE-----CCSSEEEEEEEETTEEEEEEBSCS
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE-------------EcC-----CCCCCcEEEEeCCCeEEEEECCCC
Confidence 35667774 45566666678999999998876422 111 124588999999885444444899
Q ss_pred eEEEEECCCceE-EEecCcc-----CCeEEEEEecCCCEEEEEe--cCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC
Q 010754 297 QARIWSTNGDLK-CTLSKHK-----GPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368 (502)
Q Consensus 297 ~i~iwd~~~~~~-~~~~~~~-----~~v~~l~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~ 368 (502)
.|.+||..+..+ ..+.... .....+++ ++..+++++ .++.|.+||..+++.+..+... .....+.+.++
T Consensus 106 ~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~d 182 (328)
T 3dsm_A 106 RIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKY 182 (328)
T ss_dssp EEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTT
T ss_pred eEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCC
Confidence 999999876443 3333222 14456777 345555555 4899999999999988877653 34567788887
Q ss_pred CEEEEEeCC-----------CeEEEEEcCCCcceEEEecC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-
Q 010754 369 VSFATSSTD-----------NMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD- 435 (502)
Q Consensus 369 ~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~h-~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~- 435 (502)
+.++.++.. +.|.++|..+++....+... ......++|+|++++|..+.. .|.+||..+++....
T Consensus 183 G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~ 260 (328)
T 3dsm_A 183 NKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP 260 (328)
T ss_dssp SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC
T ss_pred CCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee
Confidence 776665543 68999999998887777533 246889999999999888765 899999988876421
Q ss_pred -eccCCCcEEEEEEccCCCCCCCCCccEEEEe-----ecCceEEEE
Q 010754 436 -LREHSKEIYTIRWSPTGSGTNNPNQQLILAR-----LIPYFLYWI 475 (502)
Q Consensus 436 -~~~h~~~i~~v~~sp~g~~~~~~~~~l~las-----~~~~~~iw~ 475 (502)
+..+......++++|++. .++++. .++.+.+|.
T Consensus 261 ~~~~~~~~p~gi~vdp~~g-------~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 261 FLEFRDTKYYGLTVNPNNG-------EVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp SBCCCSSCEEEEEECTTTC-------CEEEEECTTSSSEEEEEEEC
T ss_pred eecCCCCceEEEEEcCCCC-------eEEEEcccccccCCEEEEEC
Confidence 122245689999999655 455554 345666664
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-11 Score=121.02 Aligned_cols=216 Identities=13% Similarity=0.151 Sum_probs=150.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
.....++|+|+++++++...++.|++||..++... .+ ... ..... ++|+++++.|+++..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-----------~~--~~~-----~~~~~-ia~~~~g~~l~~~d~~ 191 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-----------TV--HPG-----FKGGK-PAVTKDKQRVYSIGWE 191 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-----------EE--EET-----CCBCB-CEECTTSSEEEEEBSS
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-----------Ee--ecc-----CCCCc-eeEecCCCcEEEEecC
Confidence 46789999999998888888899999998875421 11 001 11233 8999999999999886
Q ss_pred C--eEEEEECCCceE-EEe----cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE----EeeccCCe-E-E
Q 010754 296 G--QARIWSTNGDLK-CTL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ----FEFHSGPT-L-D 362 (502)
Q Consensus 296 g--~i~iwd~~~~~~-~~~----~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~v-~-~ 362 (502)
+ .|.+|+..+... ..+ ......+.+++++|++..|+++..++.|+.||..++..... ........ . .
T Consensus 192 ~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCE
T ss_pred CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcccc
Confidence 6 788888764322 222 22445678899999655666677889999999987763322 11111122 2 8
Q ss_pred EEecC-CCE-EEEEeCCCeEEEEEcCCCcceEEEecCC---------------CcEEEEEEcCCCCEEEEEe-CCCcEEE
Q 010754 363 VDWRN-NVS-FATSSTDNMIYVCKIGENRPIKTFAGHQ---------------GEVNCVKWDPTGSLLASCS-DDVTAKI 424 (502)
Q Consensus 363 v~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~---------------~~i~~l~~sp~g~~las~s-~dg~i~i 424 (502)
++|++ ++. +++....+.|+.|+.... +..+.++. .....++++|+|+++++-+ .++.|+.
T Consensus 272 ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~ 349 (409)
T 3hrp_A 272 LIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK 349 (409)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred EEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence 88987 455 455566788999987654 44444442 3588999999999888888 8899999
Q ss_pred EECCCCeeEEEeccC---------------CCcEEEEEEccCCC
Q 010754 425 WNMKQDKYVHDLREH---------------SKEIYTIRWSPTGS 453 (502)
Q Consensus 425 wd~~~~~~~~~~~~h---------------~~~i~~v~~sp~g~ 453 (502)
|++.++.. ..+.++ -.....|+++|+|.
T Consensus 350 ~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~ 392 (409)
T 3hrp_A 350 LDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG 392 (409)
T ss_dssp EETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE
T ss_pred EECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC
Confidence 99877764 334333 23588999999976
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-10 Score=108.64 Aligned_cols=219 Identities=8% Similarity=-0.018 Sum_probs=155.7
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
+...+.+++++++|.++++...++.|..|+.. +.. . ... . ......+.++++.++|+++++..
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~---------~--~~~-~----~~~~~~~~~i~~~~~g~l~v~~~ 117 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII---------K--EYT-L----PNPDSAPYGITEGPNGDIWFTEM 117 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE---------E--EEE-C----SSTTCCEEEEEECTTSCEEEEET
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE---------E--EEe-C----CCcCCCceeeEECCCCCEEEEec
Confidence 45678999999999988887778889999865 221 0 010 0 11234689999999999888877
Q ss_pred CCCeEEEEECCCceEEE-ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE-EeeccCCeEEEEecCCCEE
Q 010754 294 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSF 371 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~ 371 (502)
.++.|.+||..+..... .......+.++++.++|+.+++...++.|..||. +++.... .......+..+++.+++.+
T Consensus 118 ~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 196 (299)
T 2z2n_A 118 NGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDAL 196 (299)
T ss_dssp TTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCE
Confidence 78999999986544332 2334567899999999987777777889999998 6665442 1223445788888776555
Q ss_pred EEEe-CCCeEEEEEcCCCcceEE-EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eccCCCcEEEEEE
Q 010754 372 ATSS-TDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRW 448 (502)
Q Consensus 372 ~~~~-~d~~i~i~d~~~~~~~~~-~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~v~~ 448 (502)
.++. .++.|.+|+. ++..... ...+...+.+++++++|+++++...++.|.+||. ++..... +..+...+.++++
T Consensus 197 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF 274 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE
T ss_pred EEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe
Confidence 5544 5789999998 5553321 2334567999999999997777767889999998 4543322 3344567999999
Q ss_pred ccCCC
Q 010754 449 SPTGS 453 (502)
Q Consensus 449 sp~g~ 453 (502)
++|.
T Consensus 275 -~~g~ 278 (299)
T 2z2n_A 275 -DGET 278 (299)
T ss_dssp -CSSC
T ss_pred -cCCC
Confidence 8876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-12 Score=133.77 Aligned_cols=197 Identities=7% Similarity=0.032 Sum_probs=138.4
Q ss_pred CCCeEEEEECCCCCEEEEEECCC-----eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCe----------
Q 010754 274 SKDVTTLDWNGEGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT---------- 338 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~---------- 338 (502)
...+..++|||||++|+.+..++ .|++||+.+............+..++|+|+|+.|+.++.++.
T Consensus 124 ~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred CEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 34588999999999998876543 899999987655433323334678999999999999888766
Q ss_pred ------EEEEEcCCCceE--EEEee--ccCCeEEEEecCCCE-EEEEeC-----CCeEEEEEcCC------Cc-ceEEEe
Q 010754 339 ------AIVWDVKTEEWK--QQFEF--HSGPTLDVDWRNNVS-FATSST-----DNMIYVCKIGE------NR-PIKTFA 395 (502)
Q Consensus 339 ------i~~wd~~~~~~~--~~~~~--~~~~v~~v~~~~~~~-~~~~~~-----d~~i~i~d~~~------~~-~~~~~~ 395 (502)
|++|++.++... ..+.. +...+..+.|++++. ++..+. +..|++||+.+ +. ....+.
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 999999887632 22332 344578899988775 444432 57899999986 43 466677
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCe--eEEEeccCCC--cEEEEEEccCCCCCCCCCccEEEEee
Q 010754 396 GHQGEVNCVKWDPTGSLLASCSDD----VTAKIWNMKQDK--YVHDLREHSK--EIYTIRWSPTGSGTNNPNQQLILARL 467 (502)
Q Consensus 396 ~h~~~i~~l~~sp~g~~las~s~d----g~i~iwd~~~~~--~~~~~~~h~~--~i~~v~~sp~g~~~~~~~~~l~las~ 467 (502)
.+...+.. .|+|+|..|+..+.. +.|.+||+.++. ....+..|.. .+..++|++++. .++.+..
T Consensus 284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------lv~~~~~ 355 (710)
T 2xdw_A 284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF-------LVLCYLH 355 (710)
T ss_dssp CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE-------EEEEEEE
T ss_pred CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE-------EEEEEEE
Confidence 67666655 488999988776653 369999998764 2344444543 688899997665 4455555
Q ss_pred cCceEEEEeee
Q 010754 468 IPYFLYWICSI 478 (502)
Q Consensus 468 ~~~~~iw~~~~ 478 (502)
++..++|.+++
T Consensus 356 ~g~~~l~~~~~ 366 (710)
T 2xdw_A 356 DVKNTLQLHDL 366 (710)
T ss_dssp TTEEEEEEEET
T ss_pred CCEEEEEEEEC
Confidence 67677776553
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=125.59 Aligned_cols=182 Identities=16% Similarity=0.078 Sum_probs=135.4
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
.+..+++++...+|++|+.++ +++|++.+.............. ........ |+.|+| ++++|+++ .++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~-------~~~~~lp~-V~~l~f--d~~~L~v~-~~~ 106 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-------KWEKEIPD-VIFVCF--HGDQVLVS-TRN 106 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-------SEEEECTT-EEEEEE--ETTEEEEE-ESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccc-------eEEeeCCC-eeEEEE--CCCEEEEE-cCC
Confidence 588999999999999999975 6669976432100000000000 00112345 999999 99999999 789
Q ss_pred eEEEEECCCc-eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEe
Q 010754 297 QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS 375 (502)
Q Consensus 297 ~i~iwd~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~ 375 (502)
.|++||+... .......|..++.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|++.+ ++.|.
T Consensus 107 ~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~ 179 (388)
T 1xip_A 107 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLL 179 (388)
T ss_dssp EEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEE
T ss_pred cEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEE
Confidence 9999997642 33345567778888887754 38889999999999999887653 44689999999999 78899
Q ss_pred CCCeEEEEEcCCCcc--eEEE------e---cCCCcEEEEEEcCCCCEEEEEe
Q 010754 376 TDNMIYVCKIGENRP--IKTF------A---GHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 376 ~d~~i~i~d~~~~~~--~~~~------~---~h~~~i~~l~~sp~g~~las~s 417 (502)
.||.+++|+...... ..++ . +|...|.+|.|.+++.+|++-+
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 999999999887765 5556 2 3778899999999999988743
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-10 Score=110.86 Aligned_cols=222 Identities=9% Similarity=0.010 Sum_probs=151.4
Q ss_pred CceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 216 SEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 216 ~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
.-..+.+|+|+ +.++++...++.|..|+..++... . .. ....+.+++|+++|+++++. .
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-----------~---~~-----~~~~v~~i~~~~dg~l~v~~-~ 108 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-----------V---HA-----LPFMGSALAKISDSKQLIAS-D 108 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-----------E---EE-----CSSCEEEEEEEETTEEEEEE-T
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-----------E---EE-----CCCcceEEEEeCCCeEEEEE-C
Confidence 34567899997 556677777889999998765321 0 10 12468999999999877754 4
Q ss_pred CCeEEEEECCCceEEEecCc-----cCCeEEEEEecCCCEEEEEec------CCeEEEEEcCCCceEEEEeeccCCeEEE
Q 010754 295 DGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~v 363 (502)
..|.+||..+.....+... ...+..++++|+|+++++... .+.|..++ +++... +.........+
T Consensus 109 -~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i 184 (326)
T 2ghs_A 109 -DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSI 184 (326)
T ss_dssp -TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEE
T ss_pred -CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCe
Confidence 4499999865444333221 235789999999987665442 24566666 454433 33333456789
Q ss_pred EecCCCE-E-EEEeCCCeEEEEEcC--CC-cc-----eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 010754 364 DWRNNVS-F-ATSSTDNMIYVCKIG--EN-RP-----IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 364 ~~~~~~~-~-~~~~~d~~i~i~d~~--~~-~~-----~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~ 433 (502)
+|++++. + ++.+.++.|.+|++. ++ .. +..+......+..++++++|++.++...++.|.+||. +++.+
T Consensus 185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~ 263 (326)
T 2ghs_A 185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI 263 (326)
T ss_dssp EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred EEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEE
Confidence 9988763 4 444567899999986 55 32 2222233456789999999998888777789999998 67777
Q ss_pred EEeccCCCcEEEEEEc-cCCCCCCCCCccEEEEeecC
Q 010754 434 HDLREHSKEIYTIRWS-PTGSGTNNPNQQLILARLIP 469 (502)
Q Consensus 434 ~~~~~h~~~i~~v~~s-p~g~~~~~~~~~l~las~~~ 469 (502)
..+..+...+++++|+ |++. .|++++...
T Consensus 264 ~~i~~~~~~~~~~af~g~d~~-------~L~vt~~~~ 293 (326)
T 2ghs_A 264 ARYEVPGKQTTCPAFIGPDAS-------RLLVTSARE 293 (326)
T ss_dssp EEEECSCSBEEEEEEESTTSC-------EEEEEEBCT
T ss_pred EEEECCCCCcEEEEEecCCCC-------EEEEEecCC
Confidence 7777677779999998 8876 555555544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.3e-11 Score=109.24 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=153.2
Q ss_pred eEEeccCC-CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHT-SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~-~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
+-.+..|. ..+.++.++|+|++|+ +.++.|..||. +++.+. .+.. .....+.++.+.++|
T Consensus 28 ~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W-------------~~~~---~~~~~~~~~~~~~dG 88 (276)
T 3no2_A 28 VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELW-------------NIAA---PAGCEMQTARILPDG 88 (276)
T ss_dssp EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEE-------------EEEC---CTTCEEEEEEECTTS
T ss_pred EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEE-------------EEcC---CCCccccccEECCCC
Confidence 33444444 4688999999999888 45778999998 665321 1111 112357889999999
Q ss_pred CEEEEEEC-CCeEEEEECCCceEEEec------CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC
Q 010754 287 TLLATGSY-DGQARIWSTNGDLKCTLS------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP 359 (502)
Q Consensus 287 ~~l~s~~~-dg~i~iwd~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 359 (502)
+++++.+. ++.|..++.+++.+..+. .+......+.+.++|+++++...++.|..||.. |+.+..+.....
T Consensus 89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~- 166 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT- 166 (276)
T ss_dssp CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-
T ss_pred CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-
Confidence 99999887 788888898888766554 222345566789999999999999999999987 999988876543
Q ss_pred eEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCC------CcEEEEEEcCCCCEEEEEeCC--------CcEEE
Q 010754 360 TLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ------GEVNCVKWDPTGSLLASCSDD--------VTAKI 424 (502)
Q Consensus 360 v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~------~~i~~l~~sp~g~~las~s~d--------g~i~i 424 (502)
...+...+ +..+++++.+++|..+|..+++.+.++..+. ..+..+...++|+++++.+.. +..++
T Consensus 167 ~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~ 246 (276)
T 3no2_A 167 PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQL 246 (276)
T ss_dssp CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSE
T ss_pred ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceE
Confidence 34455555 4556667777799999999999999987542 237889999999998887421 23456
Q ss_pred EEC-CCCeeEEEecc
Q 010754 425 WNM-KQDKYVHDLRE 438 (502)
Q Consensus 425 wd~-~~~~~~~~~~~ 438 (502)
+.+ .+++.+..+..
T Consensus 247 ~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 247 VEIDSEGKVVWQLND 261 (276)
T ss_dssp EEECTTSBEEEEECC
T ss_pred EEECCCCCEEEEecC
Confidence 666 57777777763
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-10 Score=104.52 Aligned_cols=234 Identities=9% Similarity=-0.025 Sum_probs=162.5
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
....+.++++.++|.++++...++.|.+|+.. ++.. ... . ......+.++++.++|+++++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-----------~~~-~----~~~~~~~~~i~~~~~g~l~v~~~ 80 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-----------EFE-V----PTPDAKVMCLIVSSLGDIWFTEN 80 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-----------EEE-C----SSTTCCEEEEEECTTSCEEEEET
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-----------EEE-C----CCCCCcceeEEECCCCCEEEEec
Confidence 34678899999999988887778999999976 4321 000 0 11235689999999999887777
Q ss_pred CCCeEEEEECCCceEEE-ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE-EeeccCCeEEEEecCCCEE
Q 010754 294 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNNVSF 371 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~~~~ 371 (502)
.++.|..||..+..... .......+.++++.++++.+++...++.|..||.. ++.... +......+..+.+.+++.+
T Consensus 81 ~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l 159 (300)
T 2qc5_A 81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNAL 159 (300)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSE
T ss_pred CCCeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCE
Confidence 68899999988554322 22234678999999999888877778899999987 654432 1223456788888776555
Q ss_pred EEEe-CCCeEEEEEcCCCcceEE-EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE-eccCCCcEEEEEE
Q 010754 372 ATSS-TDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD-LREHSKEIYTIRW 448 (502)
Q Consensus 372 ~~~~-~d~~i~i~d~~~~~~~~~-~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~-~~~h~~~i~~v~~ 448 (502)
..+. .++.|..|+. +++.... ...+...+.+++++++|+++++....+.|.+|+. +++.... +..+...+.++++
T Consensus 160 ~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 160 WFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 5444 4788999998 4544321 2234457899999999988887777788999998 5554332 3334566899999
Q ss_pred ccCCCCCCCCCccEEEEee-cCceEEEE
Q 010754 449 SPTGSGTNNPNQQLILARL-IPYFLYWI 475 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~-~~~~~iw~ 475 (502)
+++|. +.+++. .+.+..+.
T Consensus 238 d~~g~--------l~v~~~~~~~i~~~~ 257 (300)
T 2qc5_A 238 GKNSE--------IWFTEWGANQIGRIT 257 (300)
T ss_dssp CSTTC--------EEEEETTTTEEEEEC
T ss_pred CCCCC--------EEEeccCCCeEEEEC
Confidence 99987 344432 35565554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-10 Score=118.51 Aligned_cols=234 Identities=15% Similarity=0.155 Sum_probs=158.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecC--CCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC----CCCCEE
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIA--DGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN----GEGTLL 289 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s----~~g~~l 289 (502)
..+..+.|+|||+++++++.|+.|.+||+. +.+.. ..+.. ......++|+ |+|+++
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-------------~~i~~-----G~~P~~ia~s~~~~pDGk~l 258 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-------------AEIKI-----GSEARSIETSKMEGWEDKYA 258 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-------------EEEEC-----CSEEEEEEECCSTTCTTTEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe-------------EEEec-----CCCCceeEEccccCCCCCEE
Confidence 356789999999999999999999999985 43321 11111 1236789999 699988
Q ss_pred EEEECC-CeEEEEECCC-ceEEEecC----------------------c-------------------------------
Q 010754 290 ATGSYD-GQARIWSTNG-DLKCTLSK----------------------H------------------------------- 314 (502)
Q Consensus 290 ~s~~~d-g~i~iwd~~~-~~~~~~~~----------------------~------------------------------- 314 (502)
+++++. +.|.|+|... +.+..+.. |
T Consensus 259 ~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i 338 (567)
T 1qks_A 259 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI 338 (567)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee
Confidence 887754 8999999643 22221110 0
Q ss_pred --cCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEEEEee-----ccCCeEEEEecCC-CE-EEEEe-CCCeEEEE
Q 010754 315 --KGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEF-----HSGPTLDVDWRNN-VS-FATSS-TDNMIYVC 383 (502)
Q Consensus 315 --~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~-----~~~~v~~v~~~~~-~~-~~~~~-~d~~i~i~ 383 (502)
......+.|+|++++|++++ .++.|.++|+.+++.+..+.. |.+.-..+ +.++ +. ++++. .++.|.++
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEe
Confidence 01123567999999887765 578999999999988777654 22112222 3554 44 44443 46899999
Q ss_pred EcCC-------CcceEEEecCCCcEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCC-----e-eEEEec------
Q 010754 384 KIGE-------NRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-------DVTAKIWNMKQD-----K-YVHDLR------ 437 (502)
Q Consensus 384 d~~~-------~~~~~~~~~h~~~i~~l~~sp~g~~las~s~-------dg~i~iwd~~~~-----~-~~~~~~------ 437 (502)
|..+ .+.++++......-..|..+|++++|..... .++|.|+|+.+. . .+..+.
T Consensus 418 d~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~ 497 (567)
T 1qks_A 418 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAG 497 (567)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHT
T ss_pred cCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccc
Confidence 9987 5677888765444455789999999988763 358999999876 2 112332
Q ss_pred --cCCCcEEEEEEccCCCCCCCCCccEEEEee-----cCceEEEE
Q 010754 438 --EHSKEIYTIRWSPTGSGTNNPNQQLILARL-----IPYFLYWI 475 (502)
Q Consensus 438 --~h~~~i~~v~~sp~g~~~~~~~~~l~las~-----~~~~~iw~ 475 (502)
.....+..+.|+|+|. .+.++.. ++.+.+++
T Consensus 498 ~~~~~~~~~~~~~~~~G~-------~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 498 ITEGQPRVVQGEFNKDGT-------EVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp CCSSCCEEEEEEECTTSS-------EEEEEEECCTTSCCEEEEEE
T ss_pred cCCCCcceEeeeECCCCC-------EEEEEeecCCCCCCcEEEEE
Confidence 1245689999999998 6666543 46666654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-10 Score=119.10 Aligned_cols=224 Identities=9% Similarity=-0.018 Sum_probs=155.4
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEEC-
Q 010754 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST- 303 (502)
Q Consensus 225 p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~- 303 (502)
|.+.++++...+++|.++|..+++.+. .+.. ...+..+.|+|||+++++++.++.|.+||+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~-------------~i~~-----g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKT-------------VLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEE-------------EEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEE-------------EEeC-----CCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 344567777889999999998876422 1111 234678999999999999999999999998
Q ss_pred --CCceEEEecCccCCeEEEEEe----cCCCEEEEEec-CCeEEEEEcCCCceEEEEeecc----------C-CeEEEEe
Q 010754 304 --NGDLKCTLSKHKGPIFSLKWN----KKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHS----------G-PTLDVDW 365 (502)
Q Consensus 304 --~~~~~~~~~~~~~~v~~l~~~----~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~----------~-~v~~v~~ 365 (502)
....+..+.... ....++|+ |+|+++++++. +++|.++|..+.+.+..+.... . .+..+..
T Consensus 227 ~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~ 305 (567)
T 1qks_A 227 MKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 305 (567)
T ss_dssp SSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred CCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE
Confidence 345555554433 35789999 69998887665 5899999999999888776321 1 4566666
Q ss_pred cCC-CE-EEEEeCCCeEEEEEcCCCcce--EEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEecc--
Q 010754 366 RNN-VS-FATSSTDNMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLRE-- 438 (502)
Q Consensus 366 ~~~-~~-~~~~~~d~~i~i~d~~~~~~~--~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~-- 438 (502)
+++ .. ++.....|.|.++|......+ ..+. .......+.|+|+|++|++++ .++.|.++|+.+++.+..+..
T Consensus 306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred cCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 554 33 445566799999998765432 2232 344577899999999987665 578999999999998876653
Q ss_pred ---CCCcEEEEEEccCCCCCCCCCccEEEEe--ecCceEEEEe
Q 010754 439 ---HSKEIYTIRWSPTGSGTNNPNQQLILAR--LIPYFLYWIC 476 (502)
Q Consensus 439 ---h~~~i~~v~~sp~g~~~~~~~~~l~las--~~~~~~iw~~ 476 (502)
|.+.-.. -++|++. .+++.+ .++.+.++..
T Consensus 385 ~~Phpg~g~~-~~~p~~g-------~v~~t~~~g~~~Vsvid~ 419 (567)
T 1qks_A 385 QTPHPGRGAN-FVHPTFG-------PVWATSHMGDDSVALIGT 419 (567)
T ss_dssp SSBCCTTCEE-EEETTTE-------EEEEEEBSSSSEEEEEEC
T ss_pred cCCCCcccee-eECCCCC-------cEEEeCCCCCCeEEEecC
Confidence 3221112 2578754 333333 3466777753
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-11 Score=112.96 Aligned_cols=233 Identities=12% Similarity=0.065 Sum_probs=157.1
Q ss_pred CCceEEeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
...+..+..+.......+|+|+++ +++++..++.|..|+. ++.. ..+. .....+..++++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-----------~~~~-------~~~~~~~gl~~d 94 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-----------DVLL-------DATAFTNGNAVD 94 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-----------EEEE-------ESCSCEEEEEEC
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-----------EEEe-------CCCCccceeeEC
Confidence 345566666667788999999988 6777778899999986 3321 0111 123468999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCceEEEecCc----cCCeEEEEEecCCCEEEE----Eec-------------CCeEEEE
Q 010754 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKH----KGPIFSLKWNKKGDYLLT----GSC-------------DKTAIVW 342 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~s----~~~-------------d~~i~~w 342 (502)
++|+++++...++.|.+|+.++......... ...+..++++++|+.+++ |.. .+.|..|
T Consensus 95 ~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~ 174 (305)
T 3dr2_A 95 AQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL 174 (305)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred CCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence 9999776655668899999875533222111 134678999999998876 332 2568888
Q ss_pred EcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCC------CeEEEEEcCCCcc--eEEE-ecCCCcEEEEEEcCCCCE
Q 010754 343 DVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTD------NMIYVCKIGENRP--IKTF-AGHQGEVNCVKWDPTGSL 412 (502)
Q Consensus 343 d~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d------~~i~i~d~~~~~~--~~~~-~~h~~~i~~l~~sp~g~~ 412 (502)
|..+++..... .......++|++++. ++++... +.|++|++..+.. ...+ ....+....++++++|++
T Consensus 175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 87777655433 344567899988764 6565554 7899999876541 1112 112344567899999995
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecC
Q 010754 413 LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIP 469 (502)
Q Consensus 413 las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~ 469 (502)
.++. .+| |.+|+. .++.+..+..+. .+.+++|+|++. .|++++.++
T Consensus 253 wv~~-~~g-v~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~-------~L~it~~~~ 298 (305)
T 3dr2_A 253 WSSS-GTG-VCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQ-------RLFITGGPC 298 (305)
T ss_dssp EECC-SSE-EEEECT-TSCEEEEEECSS-CCCEEEECTTSC-------EEEEEETTE
T ss_pred EEec-CCc-EEEECC-CCCEEEEEECCC-ceeEEEEeCCCC-------EEEEEcCCe
Confidence 5544 454 999997 577777776554 588999998886 566665543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-11 Score=113.29 Aligned_cols=200 Identities=6% Similarity=-0.026 Sum_probs=142.4
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
+...+.+++++++|+++++.. ++.|.+|+........ .. ......+.+++++++|+++++..
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~--------------~~---~~~~~~p~~i~~~~~g~l~v~~~ 126 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV--------------LP---FDGLNYPEGLAVDTQGAVYVADR 126 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE--------------CC---CCSCSSEEEEEECTTCCEEEEEG
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee--------------ee---cCCcCCCcceEECCCCCEEEEEC
Confidence 345678999999999766665 8899999976543210 00 01124589999999999887777
Q ss_pred CCCeEEEEECCCceEEE-ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEE-
Q 010754 294 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF- 371 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~- 371 (502)
.++.|.+|+........ .......+.+++++++|+.+++...++.|.+||................+..+++.+++.+
T Consensus 127 ~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~ 206 (270)
T 1rwi_B 127 GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVY 206 (270)
T ss_dssp GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEE
T ss_pred CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEE
Confidence 78999999865433222 2223346788999999997777777889999998776544332223356788999876554
Q ss_pred EEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 010754 372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 372 ~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~ 431 (502)
++...++.|.+|+............+...+.+++++++|+++++...++.|++++....+
T Consensus 207 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred EEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 444567899999987654433222334578999999999999999999999999987544
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=130.16 Aligned_cols=195 Identities=9% Similarity=-0.028 Sum_probs=131.2
Q ss_pred CCCCeEEEEECCCCCEEEEE-----ECCCeEEEEECCCceEEEecCccCCe--EEEEEecCCCEEEEEecCCe-------
Q 010754 273 KSKDVTTLDWNGEGTLLATG-----SYDGQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCDKT------- 338 (502)
Q Consensus 273 ~~~~v~~l~~s~~g~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~d~~------- 338 (502)
|...+..++|||||++||.+ +.+..|++||+.+..... ..+...+ ..++|+|+|+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 44568999999999999843 344689999998654430 1122222 68999999999999988776
Q ss_pred ------EEEEEcCCCce--EEEEe--eccCCeEEEEecCCCE-EEEEeCCC----eEEEEEcCCCcceEEEecCCCcEEE
Q 010754 339 ------AIVWDVKTEEW--KQQFE--FHSGPTLDVDWRNNVS-FATSSTDN----MIYVCKIGENRPIKTFAGHQGEVNC 403 (502)
Q Consensus 339 ------i~~wd~~~~~~--~~~~~--~~~~~v~~v~~~~~~~-~~~~~~d~----~i~i~d~~~~~~~~~~~~h~~~i~~ 403 (502)
|++|++.++.. ...+. .+...+..+.|++++. ++.++.++ .|++++..++. ...+..+...+..
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~ 276 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYE 276 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEE
Confidence 99999988762 22233 2445788999988765 55555444 67777665554 4455556666666
Q ss_pred EEEcCCCCEEEEEe---CCCcEEEEECCCCee---EEEeccC-CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 404 VKWDPTGSLLASCS---DDVTAKIWNMKQDKY---VHDLREH-SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 404 l~~sp~g~~las~s---~dg~i~iwd~~~~~~---~~~~~~h-~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..+ ++|.+++++. .++.|.+||+.++.. ...+..+ ...+..++|+ ++. .++.+..++..++|..
T Consensus 277 ~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~-------lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 277 VHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGH-------LSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTE-------EEEEEEETTEEEEEEE
T ss_pred EEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCE-------EEEEEEECCEEEEEEE
Confidence 667 5666544444 257899999987653 3333333 4568889998 443 4556666788899976
Q ss_pred ee
Q 010754 477 SI 478 (502)
Q Consensus 477 ~~ 478 (502)
++
T Consensus 348 ~~ 349 (695)
T 2bkl_A 348 TL 349 (695)
T ss_dssp ET
T ss_pred eC
Confidence 53
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-11 Score=125.45 Aligned_cols=220 Identities=10% Similarity=0.095 Sum_probs=147.1
Q ss_pred ccCCCceEEEEEcCCCCeEEEE-----eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 212 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sg-----s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+|...+..++|||||++||.+ +.+.+|++||+.+++... ..+.. .....++|+ ||
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~---------~~~~~---------~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLE---------TPLKD---------VKFSGISWL-GN 185 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEE---------EEEEE---------EESCCCEEE-TT
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCc---------cccCC---------ceeccEEEe-CC
Confidence 3566788999999999988843 333579999999876321 00000 012467899 99
Q ss_pred CEEEEEECCC-------------eEEEEECCCce---EEEe--cC-ccCCeEEEEEecCCCEEEEEec----CCeEEEEE
Q 010754 287 TLLATGSYDG-------------QARIWSTNGDL---KCTL--SK-HKGPIFSLKWNKKGDYLLTGSC----DKTAIVWD 343 (502)
Q Consensus 287 ~~l~s~~~dg-------------~i~iwd~~~~~---~~~~--~~-~~~~v~~l~~~~~~~~l~s~~~----d~~i~~wd 343 (502)
+.|+.++.+. .|++|++.+.. ...+ .. |...+.++.|+|+|++|+.... ++.|+++|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999998774 39999976432 2233 23 4455788999999998865433 35899999
Q ss_pred cCCCc-eEEEEeeccCCeEEEEecCCCEEEEEe-C---CCeEEEEEcCCCcc--eEEEecCCCcEEEEEEcCCCCEEEEE
Q 010754 344 VKTEE-WKQQFEFHSGPTLDVDWRNNVSFATSS-T---DNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 344 ~~~~~-~~~~~~~~~~~v~~v~~~~~~~~~~~~-~---d~~i~i~d~~~~~~--~~~~~~h~~~i~~l~~sp~g~~las~ 416 (502)
+.++. ....+..+..........+++.|+..+ . .+.|..+++.++.. ...+..|...+. .|++++++|+..
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~ 343 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE 343 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE
T ss_pred CCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE
Confidence 97763 344555555555554334455544443 3 36799999988754 456666766665 899999988776
Q ss_pred eC-CC--cEEEEECCCCeeEEEec-cCCCcEEEEEEccCCC
Q 010754 417 SD-DV--TAKIWNMKQDKYVHDLR-EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 417 s~-dg--~i~iwd~~~~~~~~~~~-~h~~~i~~v~~sp~g~ 453 (502)
.. ++ .|++|++..+. ...+. ...+.+..+.++|++.
T Consensus 344 ~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 344 YMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDP 383 (693)
T ss_dssp EEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCS
T ss_pred EEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCC
Confidence 65 43 68999987544 44444 3445677888888876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=111.13 Aligned_cols=203 Identities=8% Similarity=-0.028 Sum_probs=142.3
Q ss_pred CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecC
Q 010754 235 GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSK 313 (502)
Q Consensus 235 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~ 313 (502)
.+++|.+||..+++....+.. .... .........+.+. +++++++...++.|.+||... +.+..+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~---------~~n~--~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~- 81 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFY---------RANG--FKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT- 81 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHH---------HHHS--SCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHh---------hhcC--cccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-
Confidence 378999999988764321100 0000 0111335677774 345555566679999999874 4445553
Q ss_pred ccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEEEEeecc-----CCeEEEEecCCCEEEEEe--CCCeEEEEEc
Q 010754 314 HKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFHS-----GPTLDVDWRNNVSFATSS--TDNMIYVCKI 385 (502)
Q Consensus 314 ~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~v~~~~~~~~~~~~--~d~~i~i~d~ 385 (502)
.......+++++++. ++++. .++.|.+||..+++....+.... .....+.+ .++.++++. .++.|.++|.
T Consensus 82 ~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~ 159 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDT 159 (328)
T ss_dssp CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEET
T ss_pred CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEEC
Confidence 346678999999884 55544 89999999999998887776543 03345666 445554444 4899999999
Q ss_pred CCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCeeEEEeccC-CCcEEEEEEccCCC
Q 010754 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD----------VTAKIWNMKQDKYVHDLREH-SKEIYTIRWSPTGS 453 (502)
Q Consensus 386 ~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d----------g~i~iwd~~~~~~~~~~~~h-~~~i~~v~~sp~g~ 453 (502)
.+++.+.++... .....++++|+|++++++..+ +.|.+||..+++....+... ......++|+|++.
T Consensus 160 ~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 160 ETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRD 237 (328)
T ss_dssp TTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSC
T ss_pred CCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCC
Confidence 999888877643 346789999999988877665 78999999999988776532 33689999999987
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-09 Score=100.85 Aligned_cols=219 Identities=9% Similarity=0.019 Sum_probs=153.9
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
+...+.++++.+++.++++...++.|..||.. ++.. . ... ......+.++++.++|+++++..
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-----------~---~~~--~~~~~~~~~i~~~~~g~l~v~~~ 122 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-----------E---YPL--PQPDSGPYGITEGLNGDIWFTQL 122 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-----------E---EEC--SSTTCCEEEEEECSTTCEEEEET
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-----------E---ecC--CCCCCCCccceECCCCCEEEEcc
Confidence 44678999999999988877777889999876 4311 0 100 11124689999999999888777
Q ss_pred CCCeEEEEECCCceEEE-ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe--eccCCeEEEEecCCCE
Q 010754 294 YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRNNVS 370 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~v~~~~~~~ 370 (502)
.++.|..|+..+..... +......+.++++.++++..++...++.|..||. +++... +. .....+..+.+.+++.
T Consensus 123 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~ 200 (300)
T 2qc5_A 123 NGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGA 200 (300)
T ss_dssp TTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSS
T ss_pred CCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCC
Confidence 78899999988554422 2334567899999999996666666789999998 565543 32 2334578888877666
Q ss_pred EEEEe-CCCeEEEEEcCCCcceEE-EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-EeccCCCcEEEEE
Q 010754 371 FATSS-TDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIR 447 (502)
Q Consensus 371 ~~~~~-~d~~i~i~d~~~~~~~~~-~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~-~~~~h~~~i~~v~ 447 (502)
+..+. ..+.|.+|+. ++..... +..+...+.+++++++|+++++...++.|..||. +++... .+......+.+++
T Consensus 201 l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 201 LWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGIT 278 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEE
T ss_pred EEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeE
Confidence 55554 5678999998 4443322 2334567899999999998777777889999998 454332 2333345688899
Q ss_pred EccCCC
Q 010754 448 WSPTGS 453 (502)
Q Consensus 448 ~sp~g~ 453 (502)
+.++|.
T Consensus 279 ~~~~g~ 284 (300)
T 2qc5_A 279 FGKDGS 284 (300)
T ss_dssp ECTTSC
T ss_pred eCCCCC
Confidence 999886
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-10 Score=107.03 Aligned_cols=201 Identities=11% Similarity=0.124 Sum_probs=136.9
Q ss_pred CCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 214 HTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 214 H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
+...+.+++++++ ++++++.. ...|.+|+.. ++..... ...........+.+++++++|+++++.
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~------------~~~~~~~~~~~~~~i~~d~~g~l~v~~ 134 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIA------------KKDSEGRRMQGCNDCAFDYEGNLWITA 134 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECC------------SBCTTSCBCBCCCEEEECTTSCEEEEE
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEE------------eccCCCccccCCcCEEECCCCCEEEEe
Confidence 5577999999999 76565554 4478889987 5421100 000001112458899999999988777
Q ss_pred ECC---------------CeEEEEECCCceEEEecCccCCeEEEEEe----cCCCEEEEE-ecCCeEEEEEcC-CCceE-
Q 010754 293 SYD---------------GQARIWSTNGDLKCTLSKHKGPIFSLKWN----KKGDYLLTG-SCDKTAIVWDVK-TEEWK- 350 (502)
Q Consensus 293 ~~d---------------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~----~~~~~l~s~-~~d~~i~~wd~~-~~~~~- 350 (502)
..+ +.|..|+..+... .+..+......++|+ |+++.|+.+ ..++.|.+||.. ++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~ 213 (314)
T 1pjx_A 135 PAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN 213 (314)
T ss_dssp CBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE
T ss_pred cCcccccccccccccCCCCeEEEECCCCCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc
Confidence 654 5677777664433 333344567889999 999766555 467899999986 44421
Q ss_pred ----EEEeecc-CCeEEEEecCCCEEE-EEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEE-EEEeCCCcEE
Q 010754 351 ----QQFEFHS-GPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDVTAK 423 (502)
Q Consensus 351 ----~~~~~~~-~~v~~v~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~l-as~s~dg~i~ 423 (502)
..+..+. ..+..+++.+++.+. +...++.|.+||..+++.+..+..+...+.+++|+|+|+.| ++...++.|.
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEE
Confidence 1122222 456788887766554 44578899999998788777787777889999999999955 4555678899
Q ss_pred EEECCC
Q 010754 424 IWNMKQ 429 (502)
Q Consensus 424 iwd~~~ 429 (502)
.|++..
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 999764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-10 Score=122.33 Aligned_cols=193 Identities=11% Similarity=0.056 Sum_probs=131.9
Q ss_pred CCeEEEEECCCCCEEEEEECC-----CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCe-----------
Q 010754 275 KDVTTLDWNGEGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT----------- 338 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~----------- 338 (502)
..+..++|||||++|+.++.+ ..|++||+.+........+...+..++|+|+ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 358899999999999887654 3699999987655443223333467899999 99988877654
Q ss_pred ---EEEEEcCCCce--EEEEeecc--CCeEEEEecCCCE-EEEEeC-----CCeEEEEEcCCC--cceEEEecCCCcEEE
Q 010754 339 ---AIVWDVKTEEW--KQQFEFHS--GPTLDVDWRNNVS-FATSST-----DNMIYVCKIGEN--RPIKTFAGHQGEVNC 403 (502)
Q Consensus 339 ---i~~wd~~~~~~--~~~~~~~~--~~v~~v~~~~~~~-~~~~~~-----d~~i~i~d~~~~--~~~~~~~~h~~~i~~ 403 (502)
|++|++.++.. ...+.... ..+..+.|++++. ++..+. ...|++||+.++ .+...+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 89999977752 22333322 3578999998874 444443 348999999877 424566656555555
Q ss_pred EEEcCCCCEEEEEeCC----CcEEEEECCCC--eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 404 VKWDPTGSLLASCSDD----VTAKIWNMKQD--KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 404 l~~sp~g~~las~s~d----g~i~iwd~~~~--~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
.. +|+|+.|+..+.+ +.|.+||+.++ .....+..+...+.+++|+ ++. .++.+..++..++|..+
T Consensus 322 ~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~-------lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 322 FV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNR-------LFASYIHDAKSQVLAFD 392 (741)
T ss_dssp EE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTE-------EEEEEEETTEEEEEEEE
T ss_pred EE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCE-------EEEEEEECCEEEEEEEe
Confidence 53 4899988887764 45999999874 3444444555567778887 333 45556667888888765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-09 Score=101.95 Aligned_cols=221 Identities=9% Similarity=-0.039 Sum_probs=134.7
Q ss_pred CCCCeEEEEeC--CC---cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE------
Q 010754 225 PAGSLLASGSG--DS---TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS------ 293 (502)
Q Consensus 225 p~~~~l~sgs~--dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~------ 293 (502)
|+++++++... .. +|.+||..+++.+. .+.. ... - .++++|||++++++.
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~-------------~i~~----g~~-p-~i~~spDg~~lyv~n~~~~~~ 90 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILG-------------HVNG----GFL-P-NPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEE-------------EecC----CCC-C-CeEECCCCCEEEEEecccccc
Confidence 56665555542 22 78999988765321 1111 112 2 899999999999886
Q ss_pred ----CCCeEEEEECCC-ceEEEecCc-------cCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEE-EeeccC
Q 010754 294 ----YDGQARIWSTNG-DLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQ-FEFHSG 358 (502)
Q Consensus 294 ----~dg~i~iwd~~~-~~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~-~~~~~~ 358 (502)
.++.|.+||... .....+... ......+.|+|+|++|++++. ++.|.++| .+++.+.. +....
T Consensus 91 ~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~- 168 (373)
T 2mad_H 91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT- 168 (373)
T ss_pred ccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-
Confidence 367899999864 333333211 123458999999999998874 57899999 99988777 53211
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEEcCCCcce-----------------------------------------------
Q 010754 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI----------------------------------------------- 391 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~----------------------------------------------- 391 (502)
.+ .+.......+++.+.||.+.+++. +++.+
T Consensus 169 ~~-~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~ 246 (373)
T 2mad_H 169 CY-HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA 246 (373)
T ss_pred eE-EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc
Confidence 11 111111223334444444444444 22221
Q ss_pred ---EEEecC----------CCcEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEeccCCCcEEEEEE
Q 010754 392 ---KTFAGH----------QGEVNCVKWDPTGSLLASCSD----------DVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (502)
Q Consensus 392 ---~~~~~h----------~~~i~~l~~sp~g~~las~s~----------dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~ 448 (502)
..+.-. ......+.++|+++.|..+.. .+.|.++|..+++.+..+. ......+++|
T Consensus 247 ~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~ 325 (373)
T 2mad_H 247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV 325 (373)
T ss_pred eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEE
Confidence 111100 011223678888887776543 3579999999999999886 3345899999
Q ss_pred ccCCCCCCCCCccEEEEee--cCceEEEEe
Q 010754 449 SPTGSGTNNPNQQLILARL--IPYFLYWIC 476 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~--~~~~~iw~~ 476 (502)
+|||. .++..+. ++.+.+++.
T Consensus 326 s~Dg~-------~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 326 AQDGG-------PDLYALSAGTEVLHIYDA 348 (373)
T ss_pred CCCCC-------eEEEEEcCCCCeEEEEEC
Confidence 99986 3344433 567777664
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-09 Score=101.23 Aligned_cols=227 Identities=9% Similarity=0.026 Sum_probs=145.8
Q ss_pred CceEEEEEcCCCCeEEEEe--CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 216 SEVCACAWSPAGSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
..+..++++|+|+++++.. .++.++||.+.+++.. .+.........+...+..++++++|+++++-.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-----------~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-----------PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-----------ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-----------cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 6789999999999988864 2343667766533211 00000011123456799999999988666554
Q ss_pred C-----CCeEEEEECCC-ceEEEecC------ccCCeEEEEEecCCCEE-EEEe---cCCeEEEEEcCCCceEEEEeecc
Q 010754 294 Y-----DGQARIWSTNG-DLKCTLSK------HKGPIFSLKWNKKGDYL-LTGS---CDKTAIVWDVKTEEWKQQFEFHS 357 (502)
Q Consensus 294 ~-----dg~i~iwd~~~-~~~~~~~~------~~~~v~~l~~~~~~~~l-~s~~---~d~~i~~wd~~~~~~~~~~~~~~ 357 (502)
. ++.|.+||+.+ .....+.. +...+..+++++++..+ ++-. .++.|.+||+.+++..+.+..|.
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 3 57899999874 44444432 22356899999865555 4444 57899999998887665443210
Q ss_pred -----------------------------CCeEEEEecCCC-EEEEEeCCC-eEEEEEcC---CCc-----ce--EEEec
Q 010754 358 -----------------------------GPTLDVDWRNNV-SFATSSTDN-MIYVCKIG---ENR-----PI--KTFAG 396 (502)
Q Consensus 358 -----------------------------~~v~~v~~~~~~-~~~~~~~d~-~i~i~d~~---~~~-----~~--~~~~~ 396 (502)
..+..|+|++++ .++++...+ .++.++.. .+. .. ....+
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 245 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS 245 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE
T ss_pred cccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc
Confidence 135778888876 455555444 56555532 110 00 01223
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-CCCcEEEEEEccCCC
Q 010754 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGS 453 (502)
Q Consensus 397 h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~g~ 453 (502)
+.+....++++++|+++++...++.|.+||..+++....... +.....+++|.++|.
T Consensus 246 ~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 246 EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY 303 (343)
T ss_dssp ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence 444567899999999999999999999999856764333322 245689999999886
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-09 Score=104.47 Aligned_cols=176 Identities=11% Similarity=-0.003 Sum_probs=124.7
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC--eEEEEEcCCCceEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQ 352 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~ 352 (502)
.....|+|+++|+++++...++.|++||..+..+..+........ ++|+++++.|++++.++ .|.+|+...+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 468899999999977777778999999998655554433333334 99999999999888866 899999876655444
Q ss_pred E----eeccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEE----EecCCCcE--EEEEEcCC-CCEEEEEeCCC
Q 010754 353 F----EFHSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKT----FAGHQGEV--NCVKWDPT-GSLLASCSDDV 420 (502)
Q Consensus 353 ~----~~~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~----~~~h~~~i--~~l~~sp~-g~~las~s~dg 420 (502)
+ ......+.++++.+ ++.++++..++.|+.||..++..... ..++...- +.++|+|+ +.++++-..++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 4 11344567888888 67777777888999999987653222 12222222 38999995 66666667788
Q ss_pred cEEEEECCCCeeEEEeccCC---------------CcEEEEEEccCCC
Q 010754 421 TAKIWNMKQDKYVHDLREHS---------------KEIYTIRWSPTGS 453 (502)
Q Consensus 421 ~i~iwd~~~~~~~~~~~~h~---------------~~i~~v~~sp~g~ 453 (502)
.|+.|+.... +..+.++. .....++|+|+|.
T Consensus 290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 9999997643 23333322 3478999999987
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=4.8e-09 Score=100.38 Aligned_cols=237 Identities=9% Similarity=-0.007 Sum_probs=150.6
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 220 ACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.++++|||++|+.++ .++.|.+||..+.+....+ ....+...........++|+|||+++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I----------~v~~g~r~~~g~~P~~~a~spDGk~l 151 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI----------ELPDAPRFLVGTYPWMTSLTPDGKTL 151 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE----------EETTCCCCCBSCCGGGEEECTTSSEE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEE----------ECCCccccccCCCCceEEEcCCCCEE
Confidence 399999999887765 3678999999887643211 00000000011245678999999999
Q ss_pred EEEEC--CCeEEEEECCCceE-EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC-CceEEEEeec----cCCeE
Q 010754 290 ATGSY--DGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQQFEFH----SGPTL 361 (502)
Q Consensus 290 ~s~~~--dg~i~iwd~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~----~~~v~ 361 (502)
+++.. ++.|.++|+....+ ..+.. .+ . ...+....+.+++.+.||.+.+.++.+ ++........ ..++.
T Consensus 152 yVan~~~~~~VsVID~~t~~vv~tI~v-~g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~ 228 (386)
T 3sjl_D 152 LFYQFSPAPAVGVVDLEGKAFKRMLDV-PD-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLI 228 (386)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEEC-CS-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBC
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEC-CC-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccc
Confidence 98875 68999999876543 34422 11 1 223333446777888999999999876 5543322111 11221
Q ss_pred -EEEe-cCCCEEEEEeCCCeEEEEEcCCCc--ceEEEe---------c-CCCcEEEEEEcCCCCEEEEEeC---------
Q 010754 362 -DVDW-RNNVSFATSSTDNMIYVCKIGENR--PIKTFA---------G-HQGEVNCVKWDPTGSLLASCSD--------- 418 (502)
Q Consensus 362 -~v~~-~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~---------~-h~~~i~~l~~sp~g~~las~s~--------- 418 (502)
...| .+++.++..+.+|.|++.|+.+.. .+..+. + ..+....++++|+++.++....
T Consensus 229 ~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 229 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp SCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred ccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence 2344 356666667778999999997664 233232 0 0122334777999988777643
Q ss_pred -CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee-cCceEEEEe
Q 010754 419 -DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL-IPYFLYWIC 476 (502)
Q Consensus 419 -dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~~ 476 (502)
.+.|.+.|+.+++.+..+.. ..++++|+++|||. ..|+++.. ++++.+++.
T Consensus 309 ~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~~------~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 309 ASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEK------PLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp CEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSSS------CEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCCC------eEEEEEcCCCCeEEEEEC
Confidence 24699999999999998873 23688999999985 13344333 677777764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.9e-09 Score=99.24 Aligned_cols=196 Identities=11% Similarity=0.074 Sum_probs=130.5
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
+..+..+...+..++++++|+++++...++.|.+|+.. ++.. .. ..... ......+..++++++|+
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~---------~~-~~~~~---~~~~~~~~~i~~d~dG~ 143 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH---------LL-VGRYA---GKRLNSPNDLIVARDGA 143 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE---------EE-ECEET---TEECSCCCCEEECTTSC
T ss_pred EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE---------EE-EeccC---CCccCCCCCEEECCCCC
Confidence 45555667789999999999977776666889999875 3311 00 00010 11123477899999999
Q ss_pred EEEE----EEC-------------CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC------CeEEEEEc
Q 010754 288 LLAT----GSY-------------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDV 344 (502)
Q Consensus 288 ~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d------~~i~~wd~ 344 (502)
++++ |.. .+.|..|+..+.....+. .......++|+|+++.|+.+... +.|.+||+
T Consensus 144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~ 222 (305)
T 3dr2_A 144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW 222 (305)
T ss_dssp EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence 8886 332 256777777433333333 44567889999999988877665 78999998
Q ss_pred CCCceE--EEE-eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCc
Q 010754 345 KTEEWK--QQF-EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVT 421 (502)
Q Consensus 345 ~~~~~~--~~~-~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~ 421 (502)
..+... ..+ .........+.+.+++.+.++..+ .|.+|+. .++.+..+..+. .+.+++|+|+++.|..++.++.
T Consensus 223 ~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 223 RDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred cCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 765421 111 111233445777777777666644 5999998 566777776555 5889999999998888887653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-12 Score=120.63 Aligned_cols=200 Identities=12% Similarity=0.002 Sum_probs=114.2
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN- 304 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~- 304 (502)
++..+++++.|+.|+.||..+++.... ... ..+.+..+..++..+++++.||.|+.||..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~-------------~~~------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t 68 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT-------------LKE------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN 68 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE-------------EEC------CCSCCCC-----CCEEECTTTCCEEEC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE-------------ecC------CCceecceEcCCCEEEEeCCCCEEEEEECCC
Confidence 577899999999999999998874321 111 123333344677788888899999999984
Q ss_pred CceEEEecCccC-CeE-EEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEec-CCCEEEEEeCCCeEE
Q 010754 305 GDLKCTLSKHKG-PIF-SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIY 381 (502)
Q Consensus 305 ~~~~~~~~~~~~-~v~-~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~~~~~~d~~i~ 381 (502)
++.+..+..+.. .+. +..+. .+..+++++.|+.|+.||..+|+.+..+..+.. ..+. .++.+++++.++.|+
T Consensus 69 G~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 69 NEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp -CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEE
T ss_pred CceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEE
Confidence 554444433211 110 00111 345788888999999999999998877765432 1122 456688888999999
Q ss_pred EEEcCCCcceEEEecCCCcEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEE-EEEccCC
Q 010754 382 VCKIGENRPIKTFAGHQGEVNCVKWDPTG---SLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT-IRWSPTG 452 (502)
Q Consensus 382 i~d~~~~~~~~~~~~h~~~i~~l~~sp~g---~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~-v~~sp~g 452 (502)
.||..+++.+..+..+. .....++++. ..+++++.||.|+.||..+++.+..+. ...++.. ..++++|
T Consensus 144 a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 144 MYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREG 215 (369)
T ss_dssp CCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSS
T ss_pred EEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCc
Confidence 99999998876665321 2223344432 457778899999999999999988776 3445543 4555665
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-08 Score=93.61 Aligned_cols=189 Identities=10% Similarity=0.049 Sum_probs=125.6
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
+...+.+++++|+|+++++ . ++.|.+||..+++.. .+... ........+..++++|+|+++++..
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~-----------~~~~~--~~~~~~~~~~di~~d~dG~l~~~~~ 116 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAV-----------VLATV--DNDKKNNRFNDGKVDPAGRYFAGTM 116 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEE-----------EEEEC--CTTCSSEEEEEEEECTTSCEEEEEE
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEE-----------EEEec--CCCCCCCCCCCEEECCCCCEEEecC
Confidence 3467999999999995554 4 467999998765421 11111 0011123478999999999776553
Q ss_pred CC-----------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEE-EecCCeEEEEEc--CCCceE--EEEe---
Q 010754 294 YD-----------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDV--KTEEWK--QQFE--- 354 (502)
Q Consensus 294 ~d-----------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~i~~wd~--~~~~~~--~~~~--- 354 (502)
.. +.|..++..+.... +..+......++|+|+++.|+. .+.++.|.+||+ .++... +.+.
T Consensus 117 ~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~ 195 (297)
T 3g4e_A 117 AEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE 195 (297)
T ss_dssp ECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred CcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC
Confidence 21 34444454444333 3334455689999999987755 455789999997 455432 1221
Q ss_pred eccCCeEEEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEc-CCCCEEEEEeC
Q 010754 355 FHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSD 418 (502)
Q Consensus 355 ~~~~~v~~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~s-p~g~~las~s~ 418 (502)
........+++.+++. +++....+.|..||..+++.+..+..+...+++++|. |+++.|..++.
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 2234567788866655 4455567889999999899998988887889999998 88876655543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-08 Score=93.42 Aligned_cols=186 Identities=12% Similarity=0.014 Sum_probs=122.5
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
...|.+++|+|+|+++++. .+ .|.+||..+++.. .+.... .......+.+++++|+|+++++...
T Consensus 89 ~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~-----------~~~~~~--~~~~~~~~~~i~~d~~G~l~v~~~~ 153 (326)
T 2ghs_A 89 PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT-----------LHAELE--SDLPGNRSNDGRMHPSGALWIGTMG 153 (326)
T ss_dssp SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE-----------EEECSS--TTCTTEEEEEEEECTTSCEEEEEEE
T ss_pred CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE-----------EEeeCC--CCCCCCCCCCEEECCCCCEEEEeCC
Confidence 4679999999999877764 44 4999998766421 111000 0011235889999999997765542
Q ss_pred ------CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecCCeEEEEEcC--CC-ce--EEEEe---eccCC
Q 010754 295 ------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVK--TE-EW--KQQFE---FHSGP 359 (502)
Q Consensus 295 ------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~--~~-~~--~~~~~---~~~~~ 359 (502)
.+.|..++ .+.. ..+..+......++|+|+++.++.+ +.++.|.+||+. ++ .. ...+. .....
T Consensus 154 ~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~ 231 (326)
T 2ghs_A 154 RKAETGAGSIYHVA-KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGG 231 (326)
T ss_dssp TTCCTTCEEEEEEE-TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSE
T ss_pred CcCCCCceEEEEEe-CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCC
Confidence 25566666 4433 3333344567899999999877655 457899999986 55 32 12222 12334
Q ss_pred eEEEEecCCCEEEEE-eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEc-CCCCEEEEEeC
Q 010754 360 TLDVDWRNNVSFATS-STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLASCSD 418 (502)
Q Consensus 360 v~~v~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~s-p~g~~las~s~ 418 (502)
...+.+.+++.+.++ ..++.|.+|+. +++.+..+..+...+++++|+ |+++.|+.++.
T Consensus 232 p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 232 MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 667888766655544 45688999998 577777787777789999998 88877655543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-08 Score=93.01 Aligned_cols=201 Identities=7% Similarity=-0.070 Sum_probs=124.4
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 220 ACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.++++|||++|+.+. .++.|.+||..+.+....+.... .... ........++|+|||++|
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~---------~~~~-~~g~~p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD---------APRF-DVGPYSWMNANTPNNADL 139 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC---------cccc-ccCCCccceEECCCCCEE
Confidence 899999999888886 36789999998765322111000 0000 001234588999999999
Q ss_pred EEEEC--CCeEEEEECCCceEEEe-cCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcCCCceEEE-------------
Q 010754 290 ATGSY--DGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVKTEEWKQQ------------- 352 (502)
Q Consensus 290 ~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~------------- 352 (502)
+++.. ++.|.++| .+...... ...... +.+.|.+ ..+++.+.||.+.++|. +++....
T Consensus 140 ~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~ 214 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNL 214 (373)
T ss_pred EEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcce
Confidence 99874 47899999 75443322 222221 2333433 33444555666666665 4433311
Q ss_pred -------------------------------------Eeec----------cCCeEEEEecCC-CEEEEEeC--------
Q 010754 353 -------------------------------------FEFH----------SGPTLDVDWRNN-VSFATSST-------- 376 (502)
Q Consensus 353 -------------------------------------~~~~----------~~~v~~v~~~~~-~~~~~~~~-------- 376 (502)
+... ......+.++++ ..+++...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~ 294 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred eecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccccc
Confidence 1000 000111333333 23333322
Q ss_pred --CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCeeEEEe
Q 010754 377 --DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCS-DDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 377 --d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~s-~dg~i~iwd~~~~~~~~~~ 436 (502)
.+.|.++|..+.+.+.++.. .....+++|+|||+ +++++. .++.|.+||..+++.+..+
T Consensus 295 ~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 295 AAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 35799999999999888863 34688999999999 777777 5899999999999998874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-08 Score=95.64 Aligned_cols=212 Identities=9% Similarity=0.039 Sum_probs=130.9
Q ss_pred CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEECCCc
Q 010754 237 STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS----------YDGQARIWSTNGD 306 (502)
Q Consensus 237 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~----------~dg~i~iwd~~~~ 306 (502)
+.|.++|..+.+.+. .+.. + ..+ .++++|||++++++. .++.|.++|....
T Consensus 99 ~~VsVID~~t~~vv~-------------~I~v---G-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 99 TQQFVIDGSTGRILG-------------MTDG---G-FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp EEEEEEETTTTEEEE-------------EEEE---C-SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CeEEEEECCCCEEEE-------------EEEC---C-CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 689999998876432 1111 0 123 899999999888886 3678999998753
Q ss_pred -eEEEecCc-------cCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEe-
Q 010754 307 -LKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS- 375 (502)
Q Consensus 307 -~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~- 375 (502)
....+... ......+.|+|+|++++++.. ++.|.+.|+.+++.+..+..... ..+.......+++.+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcC
Confidence 33333211 123467899999999999874 57899999999998877764211 111111112222222
Q ss_pred ----------------------------------------------CCCeEEEEEcCCCcc--eEEEec---C-------
Q 010754 376 ----------------------------------------------TDNMIYVCKIGENRP--IKTFAG---H------- 397 (502)
Q Consensus 376 ----------------------------------------------~d~~i~i~d~~~~~~--~~~~~~---h------- 397 (502)
..+.+.+.|...... +..+.- .
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 334444444432211 001100 0
Q ss_pred CCcEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe-
Q 010754 398 QGEVNCVKWDPTGSLLASCSD----------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR- 466 (502)
Q Consensus 398 ~~~i~~l~~sp~g~~las~s~----------dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las- 466 (502)
......++++|+++.++.... ++.|.+.|..+.+.+.++... .....|+|+|||. ..++++.
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~------~~lyv~n~ 390 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAE------PLLYALSA 390 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS------CEEEEEET
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCC------EEEEEEcC
Confidence 001112688999887666532 357999999999999998733 2588999999985 1344444
Q ss_pred ecCceEEEEe
Q 010754 467 LIPYFLYWIC 476 (502)
Q Consensus 467 ~~~~~~iw~~ 476 (502)
.++.+.+++.
T Consensus 391 ~s~~VsVID~ 400 (426)
T 3c75_H 391 GTQTLHIYDA 400 (426)
T ss_dssp TTTEEEEEET
T ss_pred CCCeEEEEEC
Confidence 3678888864
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-07 Score=91.18 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=123.7
Q ss_pred cCCCCeEEEEeC-----CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-----
Q 010754 224 SPAGSLLASGSG-----DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS----- 293 (502)
Q Consensus 224 ~p~~~~l~sgs~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~----- 293 (502)
.|+++.++.... ++.|.+.|..+.+.+. .+.. + ..+ . ++++|||++++++.
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~-------------~I~v---G-~~P-~-va~spDG~~lyVan~~~~r 101 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG-------------MIDG---G-FLP-N-PVVADDGSFIAHASTVFSR 101 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE-------------EEEE---C-SSC-E-EEECTTSSCEEEEEEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEE-------------EEEC---C-CCC-c-EEECCCCCEEEEEcccccc
Confidence 467776666654 5789999998876322 1111 1 122 3 99999999888876
Q ss_pred -----CCCeEEEEECCCce-EEEecCc-------cCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccC
Q 010754 294 -----YDGQARIWSTNGDL-KCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSG 358 (502)
Q Consensus 294 -----~dg~i~iwd~~~~~-~~~~~~~-------~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~ 358 (502)
.++.|.+||..+.. ...+... ......+.|+|+|++++++.. ++.|.++|+.+++.+.++....
T Consensus 102 ~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g- 180 (386)
T 3sjl_D 102 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD- 180 (386)
T ss_dssp TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-
T ss_pred cccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-
Confidence 35789999987543 3333211 123567999999999998874 6899999999999998885432
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEEcCC-CcceEEEecCC----CcEE-EEEEc-CCCCEEEEEeCCCcEEEEECCCCe
Q 010754 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGE-NRPIKTFAGHQ----GEVN-CVKWD-PTGSLLASCSDDVTAKIWNMKQDK 431 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~----~~i~-~l~~s-p~g~~las~s~dg~i~iwd~~~~~ 431 (502)
+..+.-.....|++.+.||.+.+.++.. ++.+.+...+. .++. ...|. ++|++++ .+.+|.|++.|+.+..
T Consensus 181 -~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 181 -CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp -EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred -cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence 2222223345688889999999999976 55433222111 1221 24564 6776555 5668999999997654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-08 Score=93.96 Aligned_cols=215 Identities=16% Similarity=0.060 Sum_probs=148.4
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD 306 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~ 306 (502)
+..|..++.++.+..+|.. ++... . .. .....+.++...+++. +..|+.++.|..||..+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~------------~-~~----~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~g~ 167 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKW------------R-FK----TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPDGT 167 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEE------------E-EE----CSSCCCSCCEECTTSC-EEEECTTSEEEEECTTSC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEE------------E-Ec----CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCCCC
Confidence 4567778888899999876 43211 0 00 0122355566667776 556778899999998866
Q ss_pred eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcC
Q 010754 307 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIG 386 (502)
Q Consensus 307 ~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~ 386 (502)
....+......+.++...+++...+ ++ +.|..|| .+++....+......+.++...+++.+.+++.++.|..++.
T Consensus 168 ~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~- 242 (330)
T 3hxj_A 168 EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP- 242 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-
T ss_pred EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-
Confidence 6666655556677788877777554 44 8899999 77777777665556677777777778888888899998974
Q ss_pred CCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe
Q 010754 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR 466 (502)
Q Consensus 387 ~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las 466 (502)
++..+..+......+..+.+.+++. |..++.+|.|..+|. +++.+..+......+.++...++|. +.+++
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~--------l~~gt 312 (330)
T 3hxj_A 243 DGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT--------IYFGT 312 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC--------EEEEC
T ss_pred CCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE--------EEEEc
Confidence 5666666665544455566666664 556778888999995 6777766654445566666666665 78888
Q ss_pred ecCceEEEE
Q 010754 467 LIPYFLYWI 475 (502)
Q Consensus 467 ~~~~~~iw~ 475 (502)
.++.+.+..
T Consensus 313 ~~G~~~~~~ 321 (330)
T 3hxj_A 313 RNGKFYALF 321 (330)
T ss_dssp TTSCEEEEE
T ss_pred CCCeEEEEe
Confidence 888776653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=8.2e-07 Score=81.42 Aligned_cols=218 Identities=7% Similarity=0.006 Sum_probs=141.5
Q ss_pred CceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-
Q 010754 216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS- 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~- 293 (502)
..+..++|+|++. ++++-..++.|..+++...... .. .. ........+++++++..|+.+.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----------~~--~~----~~~~~p~~ia~d~~~~~lyv~d~ 98 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----------TI--IR----QDLGSPEGIALDHLGRTIFWTDS 98 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----------EE--EC----TTCCCEEEEEEETTTTEEEEEET
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-----------EE--EE----CCCCCccEEEEEecCCeEEEEEC
Confidence 3567999999654 5555556789999998654310 00 00 1124578999999766555554
Q ss_pred CCCeEEEEECCCceEEEecC-ccCCeEEEEEecCCCEEEEEec---CCeEEEEEcCCCceEEEEe-eccCCeEEEEecCC
Q 010754 294 YDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTEEWKQQFE-FHSGPTLDVDWRNN 368 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~-~~~~~v~~v~~~~~ 368 (502)
..+.|.+++.++.....+.. .......++++|++..|+.+.. .+.|..+++.... ...+. ........+++.++
T Consensus 99 ~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~ 177 (267)
T 1npe_A 99 QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAF 177 (267)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETT
T ss_pred CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCC
Confidence 56899999988654433322 2245689999997666665554 3688888875433 33332 22345778888763
Q ss_pred -CE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC-cEEE
Q 010754 369 -VS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EIYT 445 (502)
Q Consensus 369 -~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~ 445 (502)
+. +++....+.|.+++.........+.+ ......++.. .+.++++....+.|.++|..+++.+..+..... ..+.
T Consensus 178 ~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~g 255 (267)
T 1npe_A 178 SSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYG 255 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCC
T ss_pred CCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccce
Confidence 44 45556678999999876544333332 3345677765 444555555678999999999999988874432 4678
Q ss_pred EEEccCCC
Q 010754 446 IRWSPTGS 453 (502)
Q Consensus 446 v~~sp~g~ 453 (502)
|++.|++-
T Consensus 256 i~~~~~~~ 263 (267)
T 1npe_A 256 ITIALSQC 263 (267)
T ss_dssp EEEECSCC
T ss_pred eeecCccC
Confidence 89998864
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-10 Score=113.31 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=98.6
Q ss_pred CCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC-eE-
Q 010754 285 EGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-TL- 361 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~- 361 (502)
++..+++++.||.|+.||.. ++.+..+.. +.+.+..+..++..+++++.|+.|+.||..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 46789999999999999965 666666655 55555556667778888889999999999998876665433211 10
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
......++.+++++.++.|+.||..+++.+..+..+. ...++|++..|++++.|+.|+.||..+++.+..+..+.
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 0111235567788889999999999999888776554 24566788899999999999999999998776654221
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
....++++++ ..+..+++++.++.+..|+
T Consensus 161 -~~~~~~~~~~----~~~~~v~~~~~dg~v~a~d 189 (369)
T 2hz6_A 161 -YAASLPEDDV----DYKMSHFVSNGDGLVVTVD 189 (369)
T ss_dssp -ECCBCCCCCT----TCCCCEEEEETSCEEEEEC
T ss_pred -ccCccccCCc----cccceEEEECCCCEEEEEE
Confidence 1112222221 1124577777777777765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-08 Score=103.49 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=124.4
Q ss_pred CCCeEEEEECCCCCEEEEEE-----CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC-----------
Q 010754 274 SKDVTTLDWNGEGTLLATGS-----YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK----------- 337 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~----------- 337 (502)
...+..++|||||++||.+. ....|++||+.+...............++|+ |++.|+.++.+.
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 34688899999999888543 2257999998865543332222223578999 999999888774
Q ss_pred --eEEEEEcCCCce--EEEEee---ccCCeEEEEecCCCEEE--EEe---CCCeEEEEEcCCCc-ceEEEecCCCcEEEE
Q 010754 338 --TAIVWDVKTEEW--KQQFEF---HSGPTLDVDWRNNVSFA--TSS---TDNMIYVCKIGENR-PIKTFAGHQGEVNCV 404 (502)
Q Consensus 338 --~i~~wd~~~~~~--~~~~~~---~~~~v~~v~~~~~~~~~--~~~---~d~~i~i~d~~~~~-~~~~~~~h~~~i~~l 404 (502)
.|++|++.++.. ...+.. +......+.|++++..+ +.+ ..+.|+++|+.++. ....+..+.......
T Consensus 207 ~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~ 286 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286 (693)
T ss_dssp CCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred CcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence 399999987653 233332 23346788998887633 332 23589999998764 455666666666555
Q ss_pred EEcCCCCEEEE-EeCC---CcEEEEECCCCee--EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeec-CceEEEE
Q 010754 405 KWDPTGSLLAS-CSDD---VTAKIWNMKQDKY--VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLI-PYFLYWI 475 (502)
Q Consensus 405 ~~sp~g~~las-~s~d---g~i~iwd~~~~~~--~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~-~~~~iw~ 475 (502)
|+++|..|+. ...+ +.|.+||+.++.. ...+..|...+. .|+|+|. .|++...+ +..+++.
T Consensus 287 -~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~-------~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 287 -VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSG-------YLFAEYMVDATARVEQ 354 (693)
T ss_dssp -EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETT-------EEEEEEEETTEEEEEE
T ss_pred -EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECC-------EEEEEEEECCeeEEEE
Confidence 6666665544 4433 6799999987654 345555665555 8999987 55555544 3334444
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-07 Score=89.11 Aligned_cols=219 Identities=11% Similarity=0.063 Sum_probs=128.1
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 220 ACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.++++|||++|+.+. .++.|.++|..+.+....+. +.. ... .........+.|+|||+++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~--------v~g-~~r-~~~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE--------LPD-APR-FLVGTYQWMNALTPDNKNL 191 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE--------ETT-CCC-CCBSCCGGGSEECTTSSEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE--------CCC-ccc-cccCCCcceEEEcCCCCEE
Confidence 799999999888776 36789999998876432110 000 000 0001234578899999999
Q ss_pred EEEEC--CCeEEEEECCCce-EEEecCcc-------CCeEEEEEecCCC-------------------------------
Q 010754 290 ATGSY--DGQARIWSTNGDL-KCTLSKHK-------GPIFSLKWNKKGD------------------------------- 328 (502)
Q Consensus 290 ~s~~~--dg~i~iwd~~~~~-~~~~~~~~-------~~v~~l~~~~~~~------------------------------- 328 (502)
+++.. ++.|.+.|+.... +..+.... +.-.-+.++++|+
T Consensus 192 yV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~ 271 (426)
T 3c75_H 192 LFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA 271 (426)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE
T ss_pred EEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee
Confidence 99875 5789999987533 33332100 0001122333333
Q ss_pred ------EEEEEecCCeEEEEEcCCCceE--EEEeec----------cCCeEEEEecCC-CE-EEEEe---------CCCe
Q 010754 329 ------YLLTGSCDKTAIVWDVKTEEWK--QQFEFH----------SGPTLDVDWRNN-VS-FATSS---------TDNM 379 (502)
Q Consensus 329 ------~l~s~~~d~~i~~wd~~~~~~~--~~~~~~----------~~~v~~v~~~~~-~~-~~~~~---------~d~~ 379 (502)
.++..+..+.|.+.|+...... ..+... ......+.++++ .+ +++.. .++.
T Consensus 272 ~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 272 FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence 3333333344444444332211 001000 000111344433 33 44332 1357
Q ss_pred EEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCeeEEEe-ccCCCcEEEEEEccC
Q 010754 380 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCS-DDVTAKIWNMKQDKYVHDL-REHSKEIYTIRWSPT 451 (502)
Q Consensus 380 i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~s-~dg~i~iwd~~~~~~~~~~-~~h~~~i~~v~~sp~ 451 (502)
|.++|..+.+.+.++... ....+|.|+|+|+ +++++. .++.|.|+|+.+++.+.++ .....+. +..+||
T Consensus 352 VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~P~--~i~~~~ 423 (426)
T 3c75_H 352 VVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRGPQ--IITTHD 423 (426)
T ss_dssp EEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSSCC--EEECCC
T ss_pred EEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCCCc--EEEcCC
Confidence 999999999999888633 3588999999999 888887 5899999999999999887 3222222 555554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-06 Score=77.62 Aligned_cols=191 Identities=10% Similarity=0.042 Sum_probs=128.5
Q ss_pred CeEEEEECCCCCEEEEEEC--CCeEEEEECCC-ceEEEecCcc-CCeEEEEEecCCCEEEEE-ecCCeEEEEEcCCCceE
Q 010754 276 DVTTLDWNGEGTLLATGSY--DGQARIWSTNG-DLKCTLSKHK-GPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWK 350 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~--dg~i~iwd~~~-~~~~~~~~~~-~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~ 350 (502)
....+.|++++.++++.+. ++.|+++|... +....+.... .....+++. ++.|+.+ -.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 4689999998755554443 57999999874 4444433211 122345554 4555544 45789999999999999
Q ss_pred EEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010754 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 351 ~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~las~s~dg~i~iw 425 (502)
.++......-..+++... .++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|.+.+....++.|.+.
T Consensus 100 ~~i~~g~~~g~glt~Dg~-~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 100 KNFTHQMKDGWGLATDGK-ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEEECCSSSCCEEEECSS-SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEECCCCCeEEEEECCC-EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 888644122344665444 44455578999999999988887776321 247788888 77666666668899999
Q ss_pred ECCCCeeEEEeccCC-------------CcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 426 NMKQDKYVHDLREHS-------------KEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 426 d~~~~~~~~~~~~h~-------------~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
|..+++.+..+.... ...+.|+|+|++. .+++ +....-+++...+
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-------~lfV-Tgk~~~~v~~i~l 235 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-------RIFV-TGKLWPKLFEIKL 235 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-------EEEE-EETTCSEEEEEEE
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCC-------EEEE-ECCCCCeEEEEEE
Confidence 999999998886321 2468999999987 4444 4444444554443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.1e-08 Score=93.34 Aligned_cols=225 Identities=10% Similarity=-0.060 Sum_probs=133.6
Q ss_pred cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEECCC-c
Q 010754 238 TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS----------YDGQARIWSTNG-D 306 (502)
Q Consensus 238 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~----------~dg~i~iwd~~~-~ 306 (502)
+|.++|..+.+.+. .+.. + ..+ .+.++|||++++++. .++.|.+||... +
T Consensus 47 ~vsvID~~t~~v~~-------------~i~v---G-~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 47 ENWVSCAGCGVTLG-------------HSLG---A-FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp EEEEEETTTTEEEE-------------EEEE---C-TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred eEEEEECCCCeEEE-------------EEeC---C-CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 78899988876422 1111 1 123 799999999999886 368999999875 4
Q ss_pred eEEEecCc-------cCCeEEEEEecCCCEEEEEec--CCeEEE--EEcCCCceEEEEeecc------------------
Q 010754 307 LKCTLSKH-------KGPIFSLKWNKKGDYLLTGSC--DKTAIV--WDVKTEEWKQQFEFHS------------------ 357 (502)
Q Consensus 307 ~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~~--d~~i~~--wd~~~~~~~~~~~~~~------------------ 357 (502)
....+... ......+.++|+|++++++.. +..|.+ +|..+ +..+....
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCP 184 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCT
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCC
Confidence 44444322 123568999999999998875 467888 99866 33332100
Q ss_pred CCeEEEEe---------------------------cCCCEEEEEeCCCeEEEEEcCCCc--ceEEEec-------CC---
Q 010754 358 GPTLDVDW---------------------------RNNVSFATSSTDNMIYVCKIGENR--PIKTFAG-------HQ--- 398 (502)
Q Consensus 358 ~~v~~v~~---------------------------~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~-------h~--- 398 (502)
+.+..+.. ..+..++..+. +.+.+.|..... .+..+.. +.
T Consensus 185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p 263 (368)
T 1mda_H 185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS 263 (368)
T ss_dssp TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred CCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence 00111111 11122222223 555566654321 1111110 00
Q ss_pred CcEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee--
Q 010754 399 GEVNCVKWDPTGSLLASCSD---------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL-- 467 (502)
Q Consensus 399 ~~i~~l~~sp~g~~las~s~---------dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-- 467 (502)
.....++++|+++.++.+.. ++.+.++|+.+.+.+..+.... ....|+|+|||. .++.+..
T Consensus 264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~-------~l~va~~~~ 335 (368)
T 1mda_H 264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGA-------SDNYANSAG 335 (368)
T ss_dssp CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSS-------CEEEEEETT
T ss_pred CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCC-------EEEEEccCC
Confidence 01112689999988776532 2356699999999999887443 588999999997 5666665
Q ss_pred cCceEEEEeeeEEEeeecccccCccee
Q 010754 468 IPYFLYWICSIYFKYFGTTERANLPLH 494 (502)
Q Consensus 468 ~~~~~iw~~~~~~~~~g~~~~~~~~~~ 494 (502)
++.+.+++... .....++.....|-.
T Consensus 336 ~~~VsVID~~t-~kvv~~I~vg~~P~~ 361 (368)
T 1mda_H 336 TEVLDIYDAAS-DQDQSSVELDKGPES 361 (368)
T ss_dssp TTEEEEEESSS-CEEEEECCCCSCCCE
T ss_pred CCeEEEEECCC-CcEEEEEECCCCCCE
Confidence 78888887532 233344444444433
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-07 Score=89.87 Aligned_cols=194 Identities=9% Similarity=0.052 Sum_probs=123.5
Q ss_pred CCeEEEEECCCCCEEEEEE--CCCeEEEEECCCceEEEec-------CccCCeEEEEEecCCCEEEEEec-----CCeEE
Q 010754 275 KDVTTLDWNGEGTLLATGS--YDGQARIWSTNGDLKCTLS-------KHKGPIFSLKWNKKGDYLLTGSC-----DKTAI 340 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~--~dg~i~iwd~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~s~~~-----d~~i~ 340 (502)
..+..++++++|+++++.. .++.++||.+.......+. .+-..+.+++++++++.+++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 4589999999999988864 2343555544322233221 24467899999999875555433 57999
Q ss_pred EEEcCCCceEEEEeecc------CCeEEEEecC-CCE-EEEEe---CCCeEEEEEcCCCcceEEEecCC-----------
Q 010754 341 VWDVKTEEWKQQFEFHS------GPTLDVDWRN-NVS-FATSS---TDNMIYVCKIGENRPIKTFAGHQ----------- 398 (502)
Q Consensus 341 ~wd~~~~~~~~~~~~~~------~~v~~v~~~~-~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~h~----------- 398 (502)
+||+.+++.+..+.... ..+.++.+.+ ++. +++.. .++.|.+||+.+++....+.+|.
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 99999998777776432 2457788874 344 45544 57899999998877655553321
Q ss_pred ------------------CcEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Ce-----eEE--EeccCCCcEEEEEE
Q 010754 399 ------------------GEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ-----DK-----YVH--DLREHSKEIYTIRW 448 (502)
Q Consensus 399 ------------------~~i~~l~~sp~g~~las~s~dg~i~iwd~~~-----~~-----~~~--~~~~h~~~i~~v~~ 448 (502)
..++.|+|+|+|+.|+.+..++. ++|.+.+ +. ... ...++......+++
T Consensus 177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~ 255 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI 255 (343)
T ss_dssp TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence 23688999999999988877663 4454321 10 000 11123334567888
Q ss_pred ccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 449 SPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+++|. .++.....+.+.+|..
T Consensus 256 d~~G~-------l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 256 DKDHN-------IYVGDLAHSAIGVITS 276 (343)
T ss_dssp CTTCC-------EEEEEGGGTEEEEEET
T ss_pred CCCCC-------EEEEccCCCeEEEEEC
Confidence 88886 3333334466777764
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-07 Score=89.31 Aligned_cols=225 Identities=9% Similarity=0.128 Sum_probs=142.0
Q ss_pred CCCCeEE-EEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeec-Ccc--ccCCCCeEEEEECCCCCEEEEEECC-----
Q 010754 225 PAGSLLA-SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRT--NEKSKDVTTLDWNGEGTLLATGSYD----- 295 (502)
Q Consensus 225 p~~~~l~-sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~v~~l~~s~~g~~l~s~~~d----- 295 (502)
+++++|+ +|..+++|.|+|+.+.... ....+.+. ... ......-..+...|+| +++++..+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~---------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE---------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS---------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC---------ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 7776555 5566889999998654211 11111121 000 0001134567778999 77776655
Q ss_pred -CeEEEEECCC-ceEEEecCccC---CeEEEEEecCCCEEEEEe-------------------cCCeEEEEEcCCCceEE
Q 010754 296 -GQARIWSTNG-DLKCTLSKHKG---PIFSLKWNKKGDYLLTGS-------------------CDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 296 -g~i~iwd~~~-~~~~~~~~~~~---~v~~l~~~~~~~~l~s~~-------------------~d~~i~~wd~~~~~~~~ 351 (502)
|.|.++|..+ ..+........ --+.+-|+|+++.+++.. .+.+|.+||+.+++.++
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 7899999774 55555543222 235688899999998885 36899999999998888
Q ss_pred EEeecc--CCeEEEEe--cCCCE--EEEEe-----CCCeEEEEEcCCCc--ceEEE--ecC----------------CCc
Q 010754 352 QFEFHS--GPTLDVDW--RNNVS--FATSS-----TDNMIYVCKIGENR--PIKTF--AGH----------------QGE 400 (502)
Q Consensus 352 ~~~~~~--~~v~~v~~--~~~~~--~~~~~-----~d~~i~i~d~~~~~--~~~~~--~~h----------------~~~ 400 (502)
++.... .....+.| ++++. ++++- .++.|.+|....+. ..+.+ ... ...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 877531 23444544 77654 45555 77788877665442 11111 110 234
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEECC---CCeeEEEeccCC--------------CcEEEEEEccCCCCCCCCCccE
Q 010754 401 VNCVKWDPTGSLLASCSD-DVTAKIWNMK---QDKYVHDLREHS--------------KEIYTIRWSPTGSGTNNPNQQL 462 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~-dg~i~iwd~~---~~~~~~~~~~h~--------------~~i~~v~~sp~g~~~~~~~~~l 462 (502)
...|.+||||++|..+.. .+.|.+||+. +.+.+..+.... +.-..++++|||. .+
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk-------~L 395 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR-------RV 395 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS-------EE
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC-------EE
Confidence 678999999999877665 7899999985 345555554221 1247899999998 66
Q ss_pred EEEe
Q 010754 463 ILAR 466 (502)
Q Consensus 463 ~las 466 (502)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.8e-07 Score=82.56 Aligned_cols=193 Identities=10% Similarity=0.019 Sum_probs=130.4
Q ss_pred eEEEEEcCCCCeEEEEeC--CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-C
Q 010754 218 VCACAWSPAGSLLASGSG--DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-Y 294 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~ 294 (502)
...++|+|++.++++.+. ++.|+++|+.+++...... + +.......+++. +..|+.+. .
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-----------l-----~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-----------M-----DDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-----------C-----CTTCCEEEEEEE--TTEEEEEETT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-----------c-----CCCcceEEEEEe--CCEEEEEEec
Confidence 579999998755555443 5899999999987432111 0 011123345554 44555444 5
Q ss_pred CCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC-----CeEEEEecCC
Q 010754 295 DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNN 368 (502)
Q Consensus 295 dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~v~~~~~ 368 (502)
++.+.++|... +.+..+...... ...++++|+.++++..++.|.++|..+.+.+..+..... .+..+.|.++
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYING 162 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT
T ss_pred CCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECC
Confidence 78999999875 444454322122 233556787777777789999999999998888764322 3567788855
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEecC-------------CCcEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAGH-------------QGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~-las~s~dg~i~iwd~~~~ 430 (502)
..++....++.|.+.|..+++.+.++.-. ....+.|+|+|+++. ++++...+.|.+.++...
T Consensus 163 ~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 44555556899999999999998888632 135689999999865 556667788888887543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-06 Score=78.35 Aligned_cols=173 Identities=11% Similarity=0.163 Sum_probs=121.8
Q ss_pred CeEEEEECCCCCEEEEEECCC--eEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDG--QARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg--~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~ 351 (502)
....+.|+ ++.++.+++.+| .|+++|+.+ +....... ..........+.++.|+... .++.+.+||..+.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 35788898 677777777766 899999875 44444432 33444433334455666554 48899999999999999
Q ss_pred EEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 352 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
++.... .-..+++.. ..++.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++.+..-.++.|.+.|
T Consensus 122 ti~~~~-eG~glt~dg-~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 122 SFNYDG-EGWGLTHND-QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp EEECSS-CCCCEEECS-SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEC
T ss_pred EEECCC-CceEEecCC-CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEE
Confidence 987643 224555443 445555557889999999998888775421 345668887 787666666788999999
Q ss_pred CCCCeeEEEeccC------------CCcEEEEEEccCCC
Q 010754 427 MKQDKYVHDLREH------------SKEIYTIRWSPTGS 453 (502)
Q Consensus 427 ~~~~~~~~~~~~h------------~~~i~~v~~sp~g~ 453 (502)
..+++.+..+... ..-.+.|||+|++.
T Consensus 199 p~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 199 PETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp TTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred CCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 9999998877632 12468999999987
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-07 Score=86.66 Aligned_cols=216 Identities=8% Similarity=-0.025 Sum_probs=126.9
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 220 ACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
.+.++||+++++++. .+++|.+||+.+.+....+. ...............++++|||+++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~----------v~~~~~~~~g~~P~~ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE----------LPDAPRFSVGPRVHIIGNCASSACL 138 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE----------ETTSCSCCBSCCTTSEEECTTSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE----------CCCccccccCCCcceEEEcCCCCEE
Confidence 799999999888886 36889999999877432111 0000000001235678999999999
Q ss_pred EEEEC--CCeEEE--EECCCceEEEecCc------------------cCCeEEEEE------------------------
Q 010754 290 ATGSY--DGQARI--WSTNGDLKCTLSKH------------------KGPIFSLKW------------------------ 323 (502)
Q Consensus 290 ~s~~~--dg~i~i--wd~~~~~~~~~~~~------------------~~~v~~l~~------------------------ 323 (502)
+++.. +..|.+ +|... ...+... .+.+..+..
T Consensus 139 yVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp EEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred EEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 99875 367888 88754 2222100 000000000
Q ss_pred --ecCCCEEEEEecCCeEEEEEcCCCc--eEEEEeec----------cCCeEEEEecCC-CEEEEE-e---C-----CCe
Q 010754 324 --NKKGDYLLTGSCDKTAIVWDVKTEE--WKQQFEFH----------SGPTLDVDWRNN-VSFATS-S---T-----DNM 379 (502)
Q Consensus 324 --~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~----------~~~v~~v~~~~~-~~~~~~-~---~-----d~~ 379 (502)
.+++..++..+. +.|.+.|+.+.. .+..+... ......+.++++ ..++++ . . ++.
T Consensus 217 ~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~ 295 (368)
T 1mda_H 217 AQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295 (368)
T ss_dssp EEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEE
T ss_pred cccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCC
Confidence 222333333333 556666654322 11111100 000111455544 344433 3 2 245
Q ss_pred EEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEEe-CCCcEEEEECCCCeeEEEeccCCCcEEEEEEcc
Q 010754 380 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCS-DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450 (502)
Q Consensus 380 i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~s-~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp 450 (502)
+.++|+.+.+.+.++.... ...+|+|+|+|+ +++++. .++.|.++|+.+++.+..+..... ...+++.+
T Consensus 296 ~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 296 TSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred EEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 6699999999888876443 588999999997 566666 599999999999999999985544 34565554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.78 E-value=7.8e-07 Score=79.56 Aligned_cols=184 Identities=12% Similarity=0.118 Sum_probs=123.2
Q ss_pred cCCCc--eEEEEEcCCCCeEEEEeCCC--cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 213 GHTSE--VCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 213 ~H~~~--V~~~~~~p~~~~l~sgs~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
.|... ...+.|+ ++.++.+.+.+| .|+++|+.+++...... + .....--.++. ++..
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-----------l-----~~~~FgeGit~--~g~~ 98 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-----------L-----GKRYFGEGISD--WKDK 98 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-----------C-----CTTCCEEEEEE--ETTE
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-----------c-----CCccceeEEEE--eCCE
Confidence 45433 4789998 677777777765 89999999987432111 0 00111222333 3445
Q ss_pred EEEEE-CCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc-----CCeE
Q 010754 289 LATGS-YDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-----GPTL 361 (502)
Q Consensus 289 l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~ 361 (502)
|.... .++.+.+||... +.+..+.... .=+.++ +++..|+.+..++.|.++|..+.+.+..+.... ..+.
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred EEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 55554 578999999864 4444554322 223444 567777777668899999999999888876532 2345
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecC------------CCcEEEEEEcCCCCEEEEEeC
Q 010754 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH------------QGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h------------~~~i~~l~~sp~g~~las~s~ 418 (502)
.+.|..+..++..-.++.|.+.|..+++.+..+... ..-.+.|+|+|+++.|...+.
T Consensus 176 ELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 176 ELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred eeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 678876655655557889999999999998887642 135689999998877766664
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-08 Score=94.66 Aligned_cols=202 Identities=13% Similarity=0.073 Sum_probs=117.5
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 010754 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 301 (502)
Q Consensus 222 ~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iw 301 (502)
....++ .|..++.++.|..|| .+++...... .....+.++...++|. |..++.+ |..+
T Consensus 26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~-----------------~~~~~~~~~~~~~~g~-l~v~t~~--l~~~ 83 (330)
T 3hxj_A 26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFK-----------------SGEIIECRPSIGKDGT-IYFGSDK--VYAI 83 (330)
T ss_dssp EECTTS-CEECSSTTTTTEEEC-TTSCEEESSC-----------------GGGEEEECCEETTTTE-ECCSSCE--EEEE
T ss_pred eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEe-----------------cCCCcccceEEecCCc-EEEecCc--EEEE
Confidence 343444 455666778888888 6655321110 0112245556666654 3444443 7777
Q ss_pred ECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEE
Q 010754 302 STNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 381 (502)
Q Consensus 302 d~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~ 381 (502)
|..+.....+...........+. +..++.++.++.|..+|.. ++....+......+.++...+++.+.+++.++.|.
T Consensus 84 d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~ 160 (330)
T 3hxj_A 84 NPDGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLY 160 (330)
T ss_dssp CCCGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEE
T ss_pred CCCCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEE
Confidence 76544333222222222223333 4567777778888888877 66666555544445555555566677777778888
Q ss_pred EEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 382 i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.+|.. ++.+..+......+.++...+++.+++.+ +.|..|| .+++.+..+......+.++...++|.
T Consensus 161 ~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~ 227 (330)
T 3hxj_A 161 AINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT 227 (330)
T ss_dssp EECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC
T ss_pred EECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe
Confidence 88887 66666666555566677777777655443 6688888 66666665554445566666666654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-05 Score=76.31 Aligned_cols=223 Identities=9% Similarity=0.046 Sum_probs=137.0
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecC-------------ccccCCCCe
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG-------------RTNEKSKDV 277 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~v 277 (502)
+.+.-....+++|.++++++.++..++.|..|+..++... .+..... ........+
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~p 82 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-----------DFAYASPYWNKAFCENSTDAEKRPLCGRT 82 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-----------EEEESCTTCCHHHHTTCCCGGGHHHHCCE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-----------EEecccccccccccccccchhccccCCCC
Confidence 3333344567899999998888888999999987654321 0000000 000011357
Q ss_pred EEEEECC-CCCEEEEEECCCeEEEEECCCceEEEecCc-----cCCeEEEEEec-CCCEEEEEec---------------
Q 010754 278 TTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKH-----KGPIFSLKWNK-KGDYLLTGSC--------------- 335 (502)
Q Consensus 278 ~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~l~~~~-~~~~l~s~~~--------------- 335 (502)
..+++.+ +|+ |+++...+.|..+|..+.....+... ......+++.+ +|+..++-..
T Consensus 83 ~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 83 YDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp EEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred ceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 8999998 555 55555556688888775543333221 13468899999 8886665432
Q ss_pred --CCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EE-EEeCCCeEEEEEcCCCc--ceEEEecCCCcEEEEEEcCC
Q 010754 336 --DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FA-TSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPT 409 (502)
Q Consensus 336 --d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~-~~~~d~~i~i~d~~~~~--~~~~~~~h~~~i~~l~~sp~ 409 (502)
++.|..||..+++...... .......+++++++. ++ +-...+.|.+|++.... ....+....+ ...++++++
T Consensus 162 ~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~ 239 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD 239 (322)
T ss_dssp CCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred CCCceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence 3678999987776433222 223456788887753 44 44567899999987532 1222222223 788999999
Q ss_pred CCEEEEEeC----------CCcEEEEECCCCeeEEEeccCC----CcEEEEEE
Q 010754 410 GSLLASCSD----------DVTAKIWNMKQDKYVHDLREHS----KEIYTIRW 448 (502)
Q Consensus 410 g~~las~s~----------dg~i~iwd~~~~~~~~~~~~h~----~~i~~v~~ 448 (502)
|++.++... .+.|..+|. .++.+..+.... ..++++++
T Consensus 240 G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~ 291 (322)
T 2fp8_A 240 GHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE 291 (322)
T ss_dssp SCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE
T ss_pred CCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE
Confidence 997777654 466888886 477666665322 34556665
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=9e-07 Score=92.41 Aligned_cols=229 Identities=12% Similarity=0.109 Sum_probs=146.7
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC------CCeEE
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY------DGQAR 299 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~------dg~i~ 299 (502)
.+..|+.++.|+.|..+|..+++......... ............+ + .+..+++++. +|.|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-------~~~~~~~~~~~p~--v----~~~~v~v~~~~~~~~~~g~v~ 193 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFE-------GQKGSLTITGAPR--V----FKGKVIIGNGGAEYGVRGYIT 193 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTT-------TCCSSCBCCSCCE--E----ETTEEEECCBCTTTCCBCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCc-------CcCcCcccccCcE--E----ECCEEEEEecccccCCCCEEE
Confidence 35678888899999999999987532111100 0000000001111 1 1345555543 68999
Q ss_pred EEECC-CceEEEecCccC--------------------------------CeEEEEEecCCCEEEEEecCC---------
Q 010754 300 IWSTN-GDLKCTLSKHKG--------------------------------PIFSLKWNKKGDYLLTGSCDK--------- 337 (502)
Q Consensus 300 iwd~~-~~~~~~~~~~~~--------------------------------~v~~l~~~~~~~~l~s~~~d~--------- 337 (502)
.||.. ++.+..+..... ....+.++|++..++.++.++
T Consensus 194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~ 273 (677)
T 1kb0_A 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRS 273 (677)
T ss_dssp EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHS
T ss_pred EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCC
Confidence 99975 565555543211 113578889888888877664
Q ss_pred ----------eEEEEEcCCCceEEEEeeccC---------CeEEEEec-CC---CEEEEEeCCCeEEEEEcCCCcceEEE
Q 010754 338 ----------TAIVWDVKTEEWKQQFEFHSG---------PTLDVDWR-NN---VSFATSSTDNMIYVCKIGENRPIKTF 394 (502)
Q Consensus 338 ----------~i~~wd~~~~~~~~~~~~~~~---------~v~~v~~~-~~---~~~~~~~~d~~i~i~d~~~~~~~~~~ 394 (502)
+|..+|..+|+.+..+..... ...-+... .+ ..++.++.+|.++++|..+++.+..+
T Consensus 274 ~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 274 PKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred ccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 599999999999888765221 11112221 22 45888899999999999999988766
Q ss_pred ecCC-----------CcE------------------------EEEEEcCCCCEEEEEeC---------------------
Q 010754 395 AGHQ-----------GEV------------------------NCVKWDPTGSLLASCSD--------------------- 418 (502)
Q Consensus 395 ~~h~-----------~~i------------------------~~l~~sp~g~~las~s~--------------------- 418 (502)
.... ..+ ..++++|++.++++...
T Consensus 354 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~ 433 (677)
T 1kb0_A 354 NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK 433 (677)
T ss_dssp ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS
T ss_pred cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccc
Confidence 5221 011 14688999888877543
Q ss_pred ----------------------CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 419 ----------------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 419 ----------------------dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.|.|..||+.+++.+..+. +..++.+..++++|. .++.++.++.+++|+
T Consensus 434 ~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~-------~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 434 PQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGN-------VVFQGTADGRLVAYH 504 (677)
T ss_dssp TTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTT-------EEEEECTTSEEEEEE
T ss_pred cccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCC-------EEEEECCCCcEEEEE
Confidence 2789999999999988776 334455555666665 677788888888886
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-06 Score=72.79 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=121.1
Q ss_pred CCeEEEEECCCCCEEEEEECCC--eEEEEECCCc-eEEEecCccCCeEEEEEecCCCEEEE-EecCCeEEEEEcCCCceE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDG--QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWK 350 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg--~i~iwd~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~ 350 (502)
.....+.|+. +.++.+.+.+| .|+.+|+.+. ...... -............++.|+. .-.++.+.+||..+.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4577899986 56666666654 8999998754 444333 2233333333333455554 445889999999999999
Q ss_pred EEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEE
Q 010754 351 QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIW 425 (502)
Q Consensus 351 ~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~las~s~dg~i~iw 425 (502)
.++.... .-..+++.. ..++++..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++.+..-.+..|.+.
T Consensus 99 ~ti~~~~-~Gwglt~dg-~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vI 175 (243)
T 3mbr_X 99 ARFRYPG-EGWALTSDD-SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARI 175 (243)
T ss_dssp EEEECSS-CCCEEEECS-SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEeCCC-CceEEeeCC-CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEE
Confidence 9988644 335666544 445555668999999999998888776432 356777776 77766666667899999
Q ss_pred ECCCCeeEEEeccC-------------CCcEEEEEEccCCC
Q 010754 426 NMKQDKYVHDLREH-------------SKEIYTIRWSPTGS 453 (502)
Q Consensus 426 d~~~~~~~~~~~~h-------------~~~i~~v~~sp~g~ 453 (502)
|..+++.+..+... ..-.+.|||+|++.
T Consensus 176 Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 176 DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred ECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence 99999998877622 12468999999876
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-06 Score=88.23 Aligned_cols=228 Identities=9% Similarity=0.080 Sum_probs=142.8
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE------CCCeEEE
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS------YDGQARI 300 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~------~dg~i~i 300 (502)
+..|+.++.|+.|..+|..+++..-...... ...........++. .++ .+++++ .+|.|+.
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~-------~~~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a 187 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRA-------DHKRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTA 187 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCS-------CTTSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcC-------CCCCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEE
Confidence 5678888899999999999987532111100 00000000011111 134 444443 3689999
Q ss_pred EECC-CceEEEecCc-------------------------------cCCeEEEEEecCCCEEEEEecCCe----------
Q 010754 301 WSTN-GDLKCTLSKH-------------------------------KGPIFSLKWNKKGDYLLTGSCDKT---------- 338 (502)
Q Consensus 301 wd~~-~~~~~~~~~~-------------------------------~~~v~~l~~~~~~~~l~s~~~d~~---------- 338 (502)
||.. ++.+..+... ......+.++|++..++.++.++.
T Consensus 188 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~ 267 (689)
T 1yiq_A 188 YDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQA 267 (689)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTT
T ss_pred EECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 9976 5555554311 001125788898889998887764
Q ss_pred ---------EEEEEcCCCceEEEEeecc---------CCeEEEEec-CC---CEEEEEeCCCeEEEEEcCCCcceEEEec
Q 010754 339 ---------AIVWDVKTEEWKQQFEFHS---------GPTLDVDWR-NN---VSFATSSTDNMIYVCKIGENRPIKTFAG 396 (502)
Q Consensus 339 ---------i~~wd~~~~~~~~~~~~~~---------~~v~~v~~~-~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 396 (502)
|..||..+|+.+..+.... .+....... .+ ..++.++.+|.++++|..+++.+.....
T Consensus 268 ~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 268 KGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI 347 (689)
T ss_dssp CSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence 9999999999998876521 122212211 12 2577888999999999999988744321
Q ss_pred CC-Cc--------------------------------------EEEEEEcCCCCEEEEEeC-------------------
Q 010754 397 HQ-GE--------------------------------------VNCVKWDPTGSLLASCSD------------------- 418 (502)
Q Consensus 397 h~-~~--------------------------------------i~~l~~sp~g~~las~s~------------------- 418 (502)
.. .. -..++|+|+..+|++.+.
T Consensus 348 ~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~ 427 (689)
T 1yiq_A 348 VPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFK 427 (689)
T ss_dssp SCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCT
T ss_pred cccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccc
Confidence 10 00 012688998888776532
Q ss_pred --------------------------CCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceE
Q 010754 419 --------------------------DVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 419 --------------------------dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
+|.|+.||+.+++.+..+..+. ++....++..|. .++.++.|+.++
T Consensus 428 ~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg-------lvf~gt~dg~l~ 499 (689)
T 1yiq_A 428 SMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGN-------LVFEGSADGRVI 499 (689)
T ss_dssp TSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-------EEEEECTTSEEE
T ss_pred cccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCC-------EEEEECCCCcEE
Confidence 3789999999999988876443 333345555554 678888888888
Q ss_pred EEE
Q 010754 473 YWI 475 (502)
Q Consensus 473 iw~ 475 (502)
.|+
T Consensus 500 a~D 502 (689)
T 1yiq_A 500 AYA 502 (689)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-05 Score=74.65 Aligned_cols=225 Identities=12% Similarity=0.060 Sum_probs=135.2
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
.....++|+|+++++++-..++.|..|+...... ..... ...+..+++.++|+++++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~------------~~~~~-------~~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ------------IHATV-------EGKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE------------EEEEC-------SSEEEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE------------EEEeC-------CCCceeEEEcCCCcEEEEeccC
Confidence 4567899999999777777788999998654210 00000 1358899999999966655443
Q ss_pred C--eEEEEECCCceEEEec--CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce-EEEEee---------ccCCeE
Q 010754 296 G--QARIWSTNGDLKCTLS--KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-KQQFEF---------HSGPTL 361 (502)
Q Consensus 296 g--~i~iwd~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~---------~~~~v~ 361 (502)
. .|..++........+. ........++..+.+..+++-..++.|.++|..++.. +..... ......
T Consensus 93 ~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn 172 (306)
T 2p4o_A 93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 172 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC
Confidence 2 4666665443332221 1122234555555544444444588999999876532 111110 111234
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCC-Ccc--eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--Ee
Q 010754 362 DVDWRNNVSFATSSTDNMIYVCKIGE-NRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH--DL 436 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d~~i~i~d~~~-~~~--~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~--~~ 436 (502)
.+....+..+++-...+.|..|++.. +.. ...+.. ......++++++|+++++....+.|.+++.. ++... .+
T Consensus 173 gis~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~ 250 (306)
T 2p4o_A 173 GLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA 250 (306)
T ss_dssp EEEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG
T ss_pred CcCcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec
Confidence 45322233456666788999999874 321 222221 1345678999999988877778899999975 65532 34
Q ss_pred ccCCCcEEEEEEc---cCCCCCCCCCccEEEEeec
Q 010754 437 REHSKEIYTIRWS---PTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 437 ~~h~~~i~~v~~s---p~g~~~~~~~~~l~las~~ 468 (502)
.......++++|. |++. .|++++..
T Consensus 251 ~~~~~~p~~~a~~g~~~d~~-------~LyVt~~~ 278 (306)
T 2p4o_A 251 EQGVIGSTAVAFGQTEGDCT-------AIYVVTNG 278 (306)
T ss_dssp GGTCTTEEEEEECCSTTTTT-------EEEEEECT
T ss_pred ccccCCceEEEEecccCCCC-------EEEEECCC
Confidence 3333568999999 8876 66666654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-06 Score=89.85 Aligned_cols=175 Identities=12% Similarity=0.069 Sum_probs=118.4
Q ss_pred EEEEECCCCCEEEEEECCCe-------------------EEEEECC-CceEEEecC--cc-------CCeEEEEEecCCC
Q 010754 278 TTLDWNGEGTLLATGSYDGQ-------------------ARIWSTN-GDLKCTLSK--HK-------GPIFSLKWNKKGD 328 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~dg~-------------------i~iwd~~-~~~~~~~~~--~~-------~~v~~l~~~~~~~ 328 (502)
..++++|++.+++.++.++. |..||.+ ++.+..+.. |. .++.......+|+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 36788898899999988764 9999976 555555543 21 1222222233554
Q ss_pred ---EEEEEecCCeEEEEEcCCCceEEEEeeccC-Ce--------------------------------------EEEEec
Q 010754 329 ---YLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-PT--------------------------------------LDVDWR 366 (502)
Q Consensus 329 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v--------------------------------------~~v~~~ 366 (502)
.++.++.+|.++++|..+|+.+........ .. ..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 788999999999999999998754432110 00 013444
Q ss_pred CC-CEEEEEeC---------------------------------------------CCeEEEEEcCCCcceEEEecCCCc
Q 010754 367 NN-VSFATSST---------------------------------------------DNMIYVCKIGENRPIKTFAGHQGE 400 (502)
Q Consensus 367 ~~-~~~~~~~~---------------------------------------------d~~i~i~d~~~~~~~~~~~~h~~~ 400 (502)
+. +.+++... +|.|+.||+.+++.+..+..+. .
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~ 476 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-I 476 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-S
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-C
Confidence 43 33333311 3789999999999988887553 3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC-cEEEEEEccCCC
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EIYTIRWSPTGS 453 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~v~~sp~g~ 453 (502)
+..-.+...+.+++.|+.||.|+.||.++|+.+..++...+ ...-+.|..+|.
T Consensus 477 ~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 477 FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCE
Confidence 33335566788999999999999999999999988874422 224467788886
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.67 E-value=5e-06 Score=80.28 Aligned_cols=177 Identities=9% Similarity=0.030 Sum_probs=114.3
Q ss_pred CCEEEEEECCCeEEEEECC-CceEEEecCccCC----eE---EEEEec--CCCEEEEEecCCeEEEEEcCCCceEEEEee
Q 010754 286 GTLLATGSYDGQARIWSTN-GDLKCTLSKHKGP----IF---SLKWNK--KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~----v~---~l~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 355 (502)
+..+++++.+|.|..+|.. +............ +. .+.-.| .+..++.++.++.+..+|..+++.+.....
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~ 267 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL 267 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence 3567788889999999975 4554444321100 00 000111 246788888899999999999988766543
Q ss_pred ccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 356 HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
.....+.. .++.+++++.++.|..+|..+++.+...... ...+...... +..|+.++.+|.|+++|..+++.+.
T Consensus 268 --~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 268 --GSVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp --CCEEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred --CCCCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEE
Confidence 23333433 3667778888999999999999887766522 2223333332 5678889999999999999999887
Q ss_pred EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 435 ~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.+......+.+.....+ ..+++++.++.+..|.
T Consensus 343 ~~~~~~~~~~~~~~~~~--------~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 343 QQKVDSSGFQTEPVAAD--------GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECCTTCBCSCCEEET--------TEEEEEBTTSCEEEEE
T ss_pred EEecCCCcceeCCEEEC--------CEEEEEeCCCEEEEEe
Confidence 76643333322111112 3578888888777663
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-06 Score=75.69 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=121.6
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~ 352 (502)
.....+.|+ ++.++.+.+.+|.|+++|+.+ +....+ -.......-..+.++.|+ +.-.++.+.+||..+.+.+.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 345788887 466777777889999999874 444443 233343322233344444 444688999999999999999
Q ss_pred EeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC-----CcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 353 FEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ-----GEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~-----~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
+.... .-..+++. +..++.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|++.+..-.++.|.+.|.
T Consensus 132 i~~~~-eGwGLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 132 TRYSG-EGWGLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp EECSS-CCCCEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred EeCCC-ceeEEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence 87643 23455554 4456666679999999999998888775422 246778887 7776666667889999999
Q ss_pred CCCeeEEEeccC-------------CCcEEEEEEccCCC
Q 010754 428 KQDKYVHDLREH-------------SKEIYTIRWSPTGS 453 (502)
Q Consensus 428 ~~~~~~~~~~~h-------------~~~i~~v~~sp~g~ 453 (502)
.+++.+..+... ..-.+.|||+|++.
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~ 247 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG 247 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence 999998877632 13568999999876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-06 Score=89.90 Aligned_cols=175 Identities=9% Similarity=0.086 Sum_probs=121.0
Q ss_pred EEEEECCCCCEEEEEECCC-------------------eEEEEECC-CceEEEecC--cc-------CCeEEEEEecCC-
Q 010754 278 TTLDWNGEGTLLATGSYDG-------------------QARIWSTN-GDLKCTLSK--HK-------GPIFSLKWNKKG- 327 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~dg-------------------~i~iwd~~-~~~~~~~~~--~~-------~~v~~l~~~~~~- 327 (502)
..+++++++..++.++.++ .|..+|.+ ++.+..+.. |. .....+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 4678889999999887764 48888876 455555432 21 122233344467
Q ss_pred --CEEEEEecCCeEEEEEcCCCceEEEEeeccCC-----------eE------------------------EEEecCC-C
Q 010754 328 --DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-----------TL------------------------DVDWRNN-V 369 (502)
Q Consensus 328 --~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-----------v~------------------------~v~~~~~-~ 369 (502)
..+++++.+|.++++|..+|+.+..+...... +. .++++++ +
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~ 405 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG 405 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence 68899999999999999999988776532111 10 2345443 4
Q ss_pred EEEEEeC-------------------------------------------CCeEEEEEcCCCcceEEEecCCCcEEEEEE
Q 010754 370 SFATSST-------------------------------------------DNMIYVCKIGENRPIKTFAGHQGEVNCVKW 406 (502)
Q Consensus 370 ~~~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~ 406 (502)
.+++... .+.|..||+.+++.+..+. +..++....+
T Consensus 406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~ 484 (677)
T 1kb0_A 406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTL 484 (677)
T ss_dssp EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEE
T ss_pred EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcce
Confidence 4444322 2789999999999888876 3344455556
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC-CcEEEEEEccCCC
Q 010754 407 DPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS-KEIYTIRWSPTGS 453 (502)
Q Consensus 407 sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~-~~i~~v~~sp~g~ 453 (502)
...+.+++.++.||.+++||..+++.+..+.... ....-+.|.++|.
T Consensus 485 ~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~ 532 (677)
T 1kb0_A 485 TTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR 532 (677)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCE
Confidence 6778889999999999999999999999887332 2334456778876
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-05 Score=70.52 Aligned_cols=185 Identities=12% Similarity=0.064 Sum_probs=122.6
Q ss_pred cCCC--ceEEEEEcCCCCeEEEEeCC--CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 213 GHTS--EVCACAWSPAGSLLASGSGD--STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 213 ~H~~--~V~~~~~~p~~~~l~sgs~d--g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
.|.. -...+.|++ +.++.+.+.+ +.|+++|+.+++...... +.. ...--.++.. .+++
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-----------l~~-----~~fgeGi~~~-~~~l 77 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-----------VPP-----PYFGAGIVAW-RDRL 77 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-----------CCT-----TCCEEEEEEE-TTEE
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-----------CCC-----CcceeEEEEe-CCEE
Confidence 4543 356899986 5666666664 489999999987532111 000 0111223332 2334
Q ss_pred EEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc-----CCeEE
Q 010754 289 LATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-----GPTLD 362 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----~~v~~ 362 (502)
....-.++.+.+||... +.+.++... ..=+.++ +++..|+.+..++.|.++|..+.+.+.++.... ..+..
T Consensus 78 y~ltw~~~~v~v~D~~tl~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe 154 (243)
T 3mbr_X 78 IQLTWRNHEGFVYDLATLTPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE 154 (243)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred EEEEeeCCEEEEEECCcCcEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence 44445679999999875 444454432 2224555 456777777778999999999999888876543 34667
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecC-------------CCcEEEEEEcCCCCEEEEEeC
Q 010754 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH-------------QGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 363 v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~las~s~ 418 (502)
+.|..+..++....+..|.+.|..+++.+..+.-. ..-.++|+|+|+++.|...+.
T Consensus 155 Le~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 155 LEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred eEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 88887766666667889999999999998887622 135789999998776665554
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.4e-06 Score=72.87 Aligned_cols=178 Identities=11% Similarity=0.063 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCe
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~ 297 (502)
...+.|+ ++.++.+.+.+|.|+++|+.+++..... +.. ....-.+++.. +++.++.-.++.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~------------l~~-----~~FgeGit~~g-~~Ly~ltw~~~~ 117 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME------------RLG-----NIFAEGLASDG-ERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE------------ECT-----TCCEEEEEECS-SCEEEEESSSCE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE------------CCC-----CcceeEEEEeC-CEEEEEEccCCE
Confidence 4688887 4677788888899999999998754311 100 11123344432 244444456799
Q ss_pred EEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccC-----CeEEEEecCCCEE
Q 010754 298 ARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG-----PTLDVDWRNNVSF 371 (502)
Q Consensus 298 i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~v~~~~~~~~ 371 (502)
+.+||... +.+.++... ..-+.++ +++..|+.+..++.|.++|..+.+.+.++..... .+..+.|..+..+
T Consensus 118 v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~ly 194 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIY 194 (268)
T ss_dssp EEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEE
T ss_pred EEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEE
Confidence 99999875 444455432 2224555 4678888877899999999999998888765332 4567888866656
Q ss_pred EEEeCCCeEEEEEcCCCcceEEEecC-------------CCcEEEEEEcCCCCEEEEEe
Q 010754 372 ATSSTDNMIYVCKIGENRPIKTFAGH-------------QGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 372 ~~~~~d~~i~i~d~~~~~~~~~~~~h-------------~~~i~~l~~sp~g~~las~s 417 (502)
+....++.|.+.|..+++.+..+... ..-.+.|+|+|+++.|+..+
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 65557889999999999988887632 13578999999765554444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-05 Score=75.77 Aligned_cols=216 Identities=14% Similarity=0.083 Sum_probs=134.2
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN- 304 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~- 304 (502)
++..++.++.++.|..+|..+++...... ... ......+ . .+..+++++.++.|..+|..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-----------~~~--~~~~~p~----~--~~~~v~v~~~~g~l~~~d~~t 162 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTK-----------VAG--EALSRPV----V--SDGLVLIHTSNGQLQALNEAD 162 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEE-----------CSS--CCCSCCE----E--ETTEEEEECTTSEEEEEETTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEe-----------CCC--ceEcCCE----E--ECCEEEEEcCCCeEEEEECCC
Confidence 45678888899999999998886421110 000 0011111 1 14578888899999999975
Q ss_pred CceEEEecCccCCe-----EEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCC-------eEEEEe---cCCC
Q 010754 305 GDLKCTLSKHKGPI-----FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP-------TLDVDW---RNNV 369 (502)
Q Consensus 305 ~~~~~~~~~~~~~v-----~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-------v~~v~~---~~~~ 369 (502)
+..+.......... ...... +..+++++.++.|..+|..+++.+..+...... +..+.. ..++
T Consensus 163 G~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (376)
T 3q7m_A 163 GAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG 240 (376)
T ss_dssp CCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT
T ss_pred CcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC
Confidence 55555443322111 112222 457888888999999999999988776533210 000111 1256
Q ss_pred EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc-CCCcEEEEEE
Q 010754 370 SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE-HSKEIYTIRW 448 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~-h~~~i~~v~~ 448 (502)
.+++++.++.+..+|..+++.+..... .....+... +..|..++.+|.|..+|..+++.+..... ....+.....
T Consensus 241 ~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 316 (376)
T 3q7m_A 241 VVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL 316 (376)
T ss_dssp EEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE
T ss_pred EEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE
Confidence 778888899999999999988766542 334455443 66788888899999999999998776652 1111222222
Q ss_pred ccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 449 SPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
. +..+++++.++.+.+++
T Consensus 317 ~---------~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 317 Y---------NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp E---------TTEEEEECTTSEEEEEE
T ss_pred E---------CCEEEEEeCCCeEEEEE
Confidence 1 12567777777776665
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.1e-05 Score=79.10 Aligned_cols=220 Identities=7% Similarity=0.005 Sum_probs=146.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|.++...++|. |..|+.++-|..|+..+.... ..........-....|.++...++|++. .|+.+
T Consensus 310 ~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-----------~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~ 376 (795)
T 4a2l_A 310 RSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-----------NIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTND 376 (795)
T ss_dssp SCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-----------EECCCTTSSSCSCSSEEEEEECTTSCEE-EEESS
T ss_pred CcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-----------EEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECC
Confidence 5799999998887 455666677888886544321 0000000011123569999999888755 57777
Q ss_pred CeEEEEECCCceEEEecC---------ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe----eccCCeEE
Q 010754 296 GQARIWSTNGDLKCTLSK---------HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE----FHSGPTLD 362 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~---------~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----~~~~~v~~ 362 (502)
+-|..|+........+.. ....|.++...++++.|..|+.++-|.+||..+++...... .....|.+
T Consensus 377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~ 456 (795)
T 4a2l_A 377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYA 456 (795)
T ss_dssp SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEE
T ss_pred CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEE
Confidence 789999977554443321 23578999998888867778888889999988876443221 12356888
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCcceEEEe------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 363 v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
+...+++.+..|+. +.+.+|+..+++...... .....|.++..+++|++.+... . -|..||..+++. .+
T Consensus 457 i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~ 531 (795)
T 4a2l_A 457 ILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QK 531 (795)
T ss_dssp EEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EE
T ss_pred EEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EE
Confidence 88877777777777 568889987764322111 1235799999999998776554 4 588999877765 22
Q ss_pred c-------cCCCcEEEEEEccCCC
Q 010754 437 R-------EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 437 ~-------~h~~~i~~v~~sp~g~ 453 (502)
. .....|.++...++|.
T Consensus 532 ~~~~~~~~l~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 532 ASILPVSNVTKLFTNCIYEASNGI 555 (795)
T ss_dssp CCCSCSCGGGGSCEEEEEECTTSC
T ss_pred ecCCCCCCCCCCeeEEEEECCCCC
Confidence 2 2334688999888886
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.60 E-value=5.8e-07 Score=89.75 Aligned_cols=210 Identities=10% Similarity=0.037 Sum_probs=135.0
Q ss_pred CCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE-C-CCCCEEEEEE---------
Q 010754 226 AGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-N-GEGTLLATGS--------- 293 (502)
Q Consensus 226 ~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-s-~~g~~l~s~~--------- 293 (502)
||++|+.... +..|.+.|+.+.++.. .+ ..+.......+++ + |+++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~-------------ii---~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~d 163 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDA-------------IL---EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND 163 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEE-------------EE---ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEee-------------EE---eCCCCCCCcceeeeecCCCcEEEEecccccccCCC
Confidence 6776666654 5679999999876422 01 0111245778887 5 8999998885
Q ss_pred ---------CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC---------------------------
Q 010754 294 ---------YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK--------------------------- 337 (502)
Q Consensus 294 ---------~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~--------------------------- 337 (502)
+++.+.+.|.....+.....-.+....++++|+|+++++++.+.
T Consensus 164 g~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 164 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp SSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred CcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 24578999987644332221212346678999999999888653
Q ss_pred -----------eEEEEEcCC--Cce-EEEEeeccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCCCc------------
Q 010754 338 -----------TAIVWDVKT--EEW-KQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENR------------ 389 (502)
Q Consensus 338 -----------~i~~wd~~~--~~~-~~~~~~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~~------------ 389 (502)
.|.+.|..+ ++. +..+.. .....++.++|++. ++++..+.+|.++|+.+.+
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~ 322 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 322 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGG
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccc
Confidence 366667766 433 334432 22445677888776 4444568899999998653
Q ss_pred ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CeeEEEeccCCCcE-----EEEEEccCCC
Q 010754 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----------DKYVHDLREHSKEI-----YTIRWSPTGS 453 (502)
Q Consensus 390 ~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~----------~~~~~~~~~h~~~i-----~~v~~sp~g~ 453 (502)
.+.... -......++|+|+|....+.-.|+.|.+||+.+ .+.+.++..|-.+- ..+..+|||.
T Consensus 323 v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 323 VVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp EEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred eEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC
Confidence 222222 234678999999994444556699999999977 56677777665432 1223467776
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-05 Score=85.50 Aligned_cols=195 Identities=12% Similarity=0.084 Sum_probs=117.5
Q ss_pred cCCC-ceEEEEEc-CCCCeEEEEeC-CC----cEEEEecCCC-CccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 213 GHTS-EVCACAWS-PAGSLLASGSG-DS----TARIWTIADG-TSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 213 ~H~~-~V~~~~~~-p~~~~l~sgs~-dg----~v~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
+|.- .+...+|| |||++||.+.. +| +|+++|+.++ +... . . +. .....++|+|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~-~-----~~----------~~~~~~~Wsp 230 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---D-K-----VS----------GTNGEIVWGP 230 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---C-C-----EE----------EECSCCEECS
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---c-c-----cc----------CceeeEEEec
Confidence 4443 67889999 99998885543 22 4999999887 5211 0 0 00 0134678999
Q ss_pred CCCEEEEEECC-----CeEEEEECCCce---EEEec-CccCCeEEEEEecCCCEEEEEec---CCeEEEEEcCCC--ce-
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDL---KCTLS-KHKGPIFSLKWNKKGDYLLTGSC---DKTAIVWDVKTE--EW- 349 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~---~~~~~-~~~~~v~~l~~~~~~~~l~s~~~---d~~i~~wd~~~~--~~- 349 (502)
||+.|+....+ ..|.++++.+.. ...+. ........+.|+|+|++|+..+. ...|.++|+.++ ..
T Consensus 231 Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~ 310 (751)
T 2xe4_A 231 DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNT 310 (751)
T ss_dssp STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCC
T ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCce
Confidence 99988877765 257777876531 22222 22334678899999998886653 346888998875 22
Q ss_pred EEEE-eeccCCeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcceEE-EecCCC--cEEEEEEcCCCCEEEEEeCCC
Q 010754 350 KQQF-EFHSGPTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIKT-FAGHQG--EVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 350 ~~~~-~~~~~~v~~v~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~-~~~h~~--~i~~l~~sp~g~~las~s~dg 420 (502)
+..+ .........+.|..+..|+..+.. ..|..+++.+...... +..+.. .+..+.+. .+.++++...+|
T Consensus 311 ~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g 389 (751)
T 2xe4_A 311 LEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAG 389 (751)
T ss_dssp EEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETT
T ss_pred eEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCC
Confidence 0222 233455677776666666555433 3677788765322222 333433 35556655 334556667777
Q ss_pred c--EEEEEC
Q 010754 421 T--AKIWNM 427 (502)
Q Consensus 421 ~--i~iwd~ 427 (502)
. |.++++
T Consensus 390 ~~~l~~~dl 398 (751)
T 2xe4_A 390 LTRIWTMMA 398 (751)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEec
Confidence 6 455564
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00027 Score=75.40 Aligned_cols=220 Identities=11% Similarity=0.078 Sum_probs=145.3
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeec-Ccc-ccCCCCeEEEEECCCCCEEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK-GRT-NEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
...|.++...++|. |..|+.++-|..|+..++.... ..... ... .-....|.++...++|+.|..|
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWig 423 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTS-----------YTLQEDESARGIGSNNIKAVYVDEKKSLVYIG 423 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEE-----------ECCC------CCSCSCEEEEEEETTTTEEEEE
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEE-----------EecCCCCcccCCCCccEEEEEEcCCCCEEEEE
Confidence 35699999988887 4457777779999877654211 00000 000 0123569999998898866778
Q ss_pred ECCCeEEEEECCCceEEEecC-----ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee------ccCCeE
Q 010754 293 SYDGQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGPTL 361 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~~v~ 361 (502)
+.++-|.+|+..+.....+.. ....|.++...++|...+. +. +.+.+||..+++....... ....|.
T Consensus 424 t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 501 (795)
T 4a2l_A 424 THAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQIT 501 (795)
T ss_dssp ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEE
T ss_pred eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCCCCeEEEccccccccccCCceEE
Confidence 887889999987655554432 3457899998888875554 44 5688999887754432211 234688
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEe-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 010754 362 DVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH 434 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~ 434 (502)
++...+++.+..|+. +.+..|+..++.. .+. .....|.+|..+++|.+.++.. . -|..||..+++...
T Consensus 502 ~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~ 576 (795)
T 4a2l_A 502 TLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR 576 (795)
T ss_dssp EEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE
Confidence 888877777777777 6688899877654 332 1235799999999998766544 3 48899987776543
Q ss_pred Eec--c-CCCcEEEEEEccCCC
Q 010754 435 DLR--E-HSKEIYTIRWSPTGS 453 (502)
Q Consensus 435 ~~~--~-h~~~i~~v~~sp~g~ 453 (502)
--. + ....|.++...++|.
T Consensus 577 ~~~~~gl~~~~i~~i~~d~~g~ 598 (795)
T 4a2l_A 577 YNTTNGLPNNVVYGILEDSFGR 598 (795)
T ss_dssp ECGGGTCSCSCEEEEEECTTSC
T ss_pred eCCCCCCchhheEEEEECCCCC
Confidence 211 1 134588888888886
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00028 Score=64.26 Aligned_cols=171 Identities=12% Similarity=0.018 Sum_probs=108.7
Q ss_pred CeEEEEECCCCCEEEEEE-CCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEE-ecCCeEEEEEcCCCceEEE
Q 010754 276 DVTTLDWNGEGTLLATGS-YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~ 352 (502)
.+..++|++++..|+.+. .++.|.+++.++.....+. ........+++++++..|+.+ ...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 478999999766666555 5689999998876443332 222467899999976655554 4567999999865433222
Q ss_pred EeeccCCeEEEEecC-CCEEEEEeC---CCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCCCCEEEE-EeCCCcEEEEE
Q 010754 353 FEFHSGPTLDVDWRN-NVSFATSST---DNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLAS-CSDDVTAKIWN 426 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~-~~~~~~~~~---d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~g~~las-~s~dg~i~iwd 426 (502)
..........+++.+ ++.+..+.. .+.|..+++.... ...+. ........++++|++..|.. -...+.|.++|
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 222224578888877 566555543 3688888876433 23332 23356889999998766554 44568999999
Q ss_pred CCCCeeEEEeccCCCcEEEEEE
Q 010754 427 MKQDKYVHDLREHSKEIYTIRW 448 (502)
Q Consensus 427 ~~~~~~~~~~~~h~~~i~~v~~ 448 (502)
.........+... .....++.
T Consensus 196 ~~g~~~~~~~~~~-~~P~gi~~ 216 (267)
T 1npe_A 196 PAQPGRRKVLEGL-QYPFAVTS 216 (267)
T ss_dssp TTEEEEEEEEECC-CSEEEEEE
T ss_pred cCCCceEEEecCC-CCceEEEE
Confidence 8765443333322 22345554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.2e-05 Score=70.84 Aligned_cols=175 Identities=9% Similarity=0.004 Sum_probs=111.4
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecC--------------------ccCCeEEEEEecCCCEEEEEec
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK--------------------HKGPIFSLKWNKKGDYLLTGSC 335 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~v~~l~~~~~~~~l~s~~~ 335 (502)
...+++|+++|++++++..++.|..|+..+.....+.. ....+.++++.++...|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 35678899999988888899999999987654433321 1235789999983345666666
Q ss_pred CCeEEEEEcCCCceEEEEee-----ccCCeEEEEecC-CCEEEEEeC------------------CCeEEEEEcCCCcce
Q 010754 336 DKTAIVWDVKTEEWKQQFEF-----HSGPTLDVDWRN-NVSFATSST------------------DNMIYVCKIGENRPI 391 (502)
Q Consensus 336 d~~i~~wd~~~~~~~~~~~~-----~~~~v~~v~~~~-~~~~~~~~~------------------d~~i~i~d~~~~~~~ 391 (502)
.+.|..+|..++.. ..+.. ......++.+.+ ++.+..+.. ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66688898765543 22221 112467788877 666555443 367888887766533
Q ss_pred EEEecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCe--eEEEeccCCCcEEEEEEccCCC
Q 010754 392 KTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDK--YVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 392 ~~~~~h~~~i~~l~~sp~g~~las~-s~dg~i~iwd~~~~~--~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.... .....+.|+|+|+|++|..+ +..+.|.+|++.... ....+....+ ...+++.++|.
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGH 241 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSC
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCC
Confidence 2222 22345679999999866555 556889999987421 1111111122 67788888886
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.39 E-value=5.3e-05 Score=75.74 Aligned_cols=183 Identities=11% Similarity=0.046 Sum_probs=121.1
Q ss_pred CCCEEEEEECC-CeEEEEECCCce-EEEec-CccCCeEEEEE-e-cCCCEEEEEe------------------cCCeEEE
Q 010754 285 EGTLLATGSYD-GQARIWSTNGDL-KCTLS-KHKGPIFSLKW-N-KKGDYLLTGS------------------CDKTAIV 341 (502)
Q Consensus 285 ~g~~l~s~~~d-g~i~iwd~~~~~-~~~~~-~~~~~v~~l~~-~-~~~~~l~s~~------------------~d~~i~~ 341 (502)
||++++++..+ +.|.+.|+.... ...+. .....+..+++ + |++.++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 88888887754 679999988744 33221 22345788887 5 8999999885 3468999
Q ss_pred EEcCCCceEEEEeeccCCeEEEEecCCCE-EEEEeCC--------------------------------------CeEEE
Q 010754 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTD--------------------------------------NMIYV 382 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~~~d--------------------------------------~~i~i 382 (502)
+|..+.+...++.... ....+..++++. +++++.+ +.|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999998888876533 223344444332 2222211 23677
Q ss_pred EEcCC--Ccc-eEEEecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe------------eEEEeccCCCcEEEE
Q 010754 383 CKIGE--NRP-IKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDK------------YVHDLREHSKEIYTI 446 (502)
Q Consensus 383 ~d~~~--~~~-~~~~~~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~~------------~~~~~~~h~~~i~~v 446 (502)
.|..+ ++. +..+.. .....++.++|||++++.++. +.+|.++|+.+.+ .+..+. -......+
T Consensus 259 ID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 77776 444 444442 234567999999998877664 7899999998653 344443 33457899
Q ss_pred EEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 447 RWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 447 ~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+|+|+|. ..++.-.++.+.+|+..
T Consensus 337 aF~~dG~-------aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 337 AFDGRGN-------AYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EECTTSE-------EEEEETTTTEEEEEEHH
T ss_pred EECCCCe-------EEEEEecCCcEEEEEhh
Confidence 9999985 34455567888888754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00055 Score=61.44 Aligned_cols=179 Identities=12% Similarity=0.187 Sum_probs=115.9
Q ss_pred CCCeEEEEECCCCCE-EEEEECCCeEEEEECCCceEEEecC-ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce--
Q 010754 274 SKDVTTLDWNGEGTL-LATGSYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW-- 349 (502)
Q Consensus 274 ~~~v~~l~~s~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~-- 349 (502)
...+..++|+|++.. +++...++.|...|..+.....+.- -....-.|++.+++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 457999999997664 4557778899999998877766532 235678899998887777766778999998865442
Q ss_pred -EEEEee------ccCCeEEEEecCCC-EEEEEeCCCeEEEEEcC---CCcceEEEe-------cCCCcEEEEEEcCCCC
Q 010754 350 -KQQFEF------HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIG---ENRPIKTFA-------GHQGEVNCVKWDPTGS 411 (502)
Q Consensus 350 -~~~~~~------~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~---~~~~~~~~~-------~h~~~i~~l~~sp~g~ 411 (502)
+..... .....-.++|.+.. .|+++.......+|.+. ....+..+. .+...+.+++++|...
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 222321 12235789997654 55555544444444443 111222221 1234578999999654
Q ss_pred -EEEEEeCCCcEEEEECCCCeeEEEeccCC---------CcEEEEEEccCCC
Q 010754 412 -LLASCSDDVTAKIWNMKQDKYVHDLREHS---------KEIYTIRWSPTGS 453 (502)
Q Consensus 412 -~las~s~dg~i~iwd~~~~~~~~~~~~h~---------~~i~~v~~sp~g~ 453 (502)
+++.......|.++|.. ++.+..+.-.. ..-..|+|.|+|.
T Consensus 186 ~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 55556667889999965 55655544221 2578999999997
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-05 Score=73.83 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=119.3
Q ss_pred CCCCEEEEEE-CCCeEEEEECCC-----ceEEEec------C-ccCCeEEEEEecCCCEEEEEecC------CeEEEEEc
Q 010754 284 GEGTLLATGS-YDGQARIWSTNG-----DLKCTLS------K-HKGPIFSLKWNKKGDYLLTGSCD------KTAIVWDV 344 (502)
Q Consensus 284 ~~g~~l~s~~-~dg~i~iwd~~~-----~~~~~~~------~-~~~~v~~l~~~~~~~~l~s~~~d------~~i~~wd~ 344 (502)
+++++|++.+ .++.|.++|+.. +...++. . ....-..+...|+| .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7777776654 668999999753 2333331 0 11134567778999 77766655 78999999
Q ss_pred CCCceEEEEeeccCC---eEEEEecCCCEEEEEeC--------------------CCeEEEEEcCCCcceEEEecC-C-C
Q 010754 345 KTEEWKQQFEFHSGP---TLDVDWRNNVSFATSST--------------------DNMIYVCKIGENRPIKTFAGH-Q-G 399 (502)
Q Consensus 345 ~~~~~~~~~~~~~~~---v~~v~~~~~~~~~~~~~--------------------d~~i~i~d~~~~~~~~~~~~h-~-~ 399 (502)
.+++.+.++.....+ -.++-|+++..++..+. +.+|.+||+.+++.+.++..- . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 999999888643222 34567777665444442 789999999998888887643 1 2
Q ss_pred cEEEEEE--cCCCCEEEEEe------CCCcEEEEECCCCee--EEEe--ccC----------------CCcEEEEEEccC
Q 010754 400 EVNCVKW--DPTGSLLASCS------DDVTAKIWNMKQDKY--VHDL--REH----------------SKEIYTIRWSPT 451 (502)
Q Consensus 400 ~i~~l~~--sp~g~~las~s------~dg~i~iwd~~~~~~--~~~~--~~h----------------~~~i~~v~~sp~ 451 (502)
....|.| +|+++++..++ .+++|.+|....++. ...+ ... ......|.+|||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4456666 99999887776 456888776554432 1111 110 134688999999
Q ss_pred CCCCCCCCccEEEEeec-CceEEEE
Q 010754 452 GSGTNNPNQQLILARLI-PYFLYWI 475 (502)
Q Consensus 452 g~~~~~~~~~l~las~~-~~~~iw~ 475 (502)
|+ .|+++... +.+.++.
T Consensus 332 Gr-------fLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 332 DK-------FLYLSLWGIGEVRQYD 349 (462)
T ss_dssp SC-------EEEEEETTTTEEEEEE
T ss_pred CC-------EEEEEeCCCCEEEEEE
Confidence 98 54544443 4455544
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00018 Score=69.52 Aligned_cols=221 Identities=8% Similarity=-0.073 Sum_probs=136.3
Q ss_pred CCCceEEEEEcCCC-CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE-E
Q 010754 214 HTSEVCACAWSPAG-SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-T 291 (502)
Q Consensus 214 H~~~V~~~~~~p~~-~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-s 291 (502)
....+..++|++.+ .++++-...+.|..+++...... . +.. ........+++.+.+..|+ +
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-----------~---~~~---~~~~~p~glavd~~~g~lY~~ 176 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-----------E---VVS---TGLESPGGLAVDWVHDKLYWT 176 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-----------E---EEC---SSCSCCCCEEEETTTTEEEEE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-----------E---EEe---CCCCCccEEEEEeCCCeEEEE
Confidence 34557899999865 45555556788888887754310 0 000 0112346778887555554 4
Q ss_pred EECCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEec-C-CeEEEEEcCCCceEEEEeeccCCeEEEEecC-
Q 010754 292 GSYDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC-D-KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN- 367 (502)
Q Consensus 292 ~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~- 367 (502)
-...+.|.+.++++.....+. ..-.....++++|.+..|+.+.. . +.|..+++..................+++.+
T Consensus 177 d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~ 256 (386)
T 3v65_B 177 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA 256 (386)
T ss_dssp ETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGG
T ss_pred cCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCC
Confidence 445678999998876544333 33356789999997766665544 3 6888888765433333333334467888863
Q ss_pred CC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEE
Q 010754 368 NV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (502)
Q Consensus 368 ~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v 446 (502)
++ .+++-...+.|..+++........+........+|++. .+.++++-...+.|..++..+++.+..+.........|
T Consensus 257 ~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi 335 (386)
T 3v65_B 257 GRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDI 335 (386)
T ss_dssp GTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCE
T ss_pred CCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceE
Confidence 34 45555667889999987544433344344567788883 55566666678889999977777766665433344555
Q ss_pred EE-ccCC
Q 010754 447 RW-SPTG 452 (502)
Q Consensus 447 ~~-sp~g 452 (502)
++ +|..
T Consensus 336 ~v~~~~~ 342 (386)
T 3v65_B 336 HTLHPQR 342 (386)
T ss_dssp EEESGGG
T ss_pred EEEchhc
Confidence 54 4443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00035 Score=66.47 Aligned_cols=220 Identities=8% Similarity=-0.063 Sum_probs=134.6
Q ss_pred CCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE-EEE
Q 010754 215 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATG 292 (502)
Q Consensus 215 ~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~s~ 292 (502)
...+..++|++.+. ++++-...+.|..+++...... .+ .. ........+++.+.+..| ++-
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-----------~~--~~----~~~~~p~glavd~~~g~ly~~d 134 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-----------EV--VS----TGLESPGGLAVDWVHDKLYWTD 134 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------EE--EC----SSCSCCCEEEEETTTTEEEEEE
T ss_pred CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-----------EE--Ee----CCCCCccEEEEecCCCeEEEEc
Confidence 34578999998654 4555556788888887754311 00 00 011235678888755555 444
Q ss_pred ECCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEec-C-CeEEEEEcCCCceEEEEeeccCCeEEEEecC-C
Q 010754 293 SYDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC-D-KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 368 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~ 368 (502)
...+.|.+.+.++.....+. ..-.....++++|.+..|+.+.. . +.|..+++..................+++.+ +
T Consensus 135 ~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 135 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG 214 (349)
T ss_dssp TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT
T ss_pred CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC
Confidence 55689999998876544433 33355689999996666555443 4 7888888764432222222233567888864 4
Q ss_pred CE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEE
Q 010754 369 VS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (502)
Q Consensus 369 ~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~ 447 (502)
+. +++-...+.|..+++........+........+|++. .+.++++-...+.|..++..+++.+..+.........|+
T Consensus 215 ~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 215 RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 44 4555567889999987544333343344567788884 555666666778899998777776666653333344554
Q ss_pred -EccCC
Q 010754 448 -WSPTG 452 (502)
Q Consensus 448 -~sp~g 452 (502)
++|..
T Consensus 294 v~~~~~ 299 (349)
T 3v64_C 294 TLHPQR 299 (349)
T ss_dssp EECGGG
T ss_pred EEcccc
Confidence 45543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.8e-05 Score=80.02 Aligned_cols=228 Identities=11% Similarity=0.078 Sum_probs=138.6
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC------CCeEEE
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY------DGQARI 300 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~------dg~i~i 300 (502)
+..++.++.|+.|..+|..+++..-...... ..........++. .+..++++.. +|.|..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~--------~~~~~~~~~~P~v------~~~~v~vg~~~~~~~~~g~v~a 182 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTD--------PAKPYSITGAPRV------VKGKVIIGNGGAEYGVRGFVSA 182 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSC--------TTSSCBCCSCCEE------ETTEEEECCBCTTTCCBCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCC--------CCCcceecCCCEE------ECCEEEEeCCCCCcCCCCEEEE
Confidence 4578888889999999999987532111100 0000000011111 1334555542 589999
Q ss_pred EECC-CceEEEecCcc-------------------------------CCeEEEEEecCCCEEEEEecCC-----------
Q 010754 301 WSTN-GDLKCTLSKHK-------------------------------GPIFSLKWNKKGDYLLTGSCDK----------- 337 (502)
Q Consensus 301 wd~~-~~~~~~~~~~~-------------------------------~~v~~l~~~~~~~~l~s~~~d~----------- 337 (502)
+|.. ++.+..+.... .....++++|....++.++.++
T Consensus 183 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~ 262 (668)
T 1kv9_A 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPG 262 (668)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTT
T ss_pred EECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCC
Confidence 9975 56655553210 0112467888888888887766
Q ss_pred --------eEEEEEcCCCceEEEEeecc---------CCeEEEEecCCC----EEEEEeCCCeEEEEEcCCCcceEEEec
Q 010754 338 --------TAIVWDVKTEEWKQQFEFHS---------GPTLDVDWRNNV----SFATSSTDNMIYVCKIGENRPIKTFAG 396 (502)
Q Consensus 338 --------~i~~wd~~~~~~~~~~~~~~---------~~v~~v~~~~~~----~~~~~~~d~~i~i~d~~~~~~~~~~~~ 396 (502)
.|..+|..+|+.+..+.... .+........++ .++.++.+|.++++|..+++.+.....
T Consensus 263 ~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 263 GGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp CCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred CCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 49999999999988887521 222222221122 478889999999999999988754432
Q ss_pred CC------------CcE------------------------EEEEEcCCCCEEEEE------------------------
Q 010754 397 HQ------------GEV------------------------NCVKWDPTGSLLASC------------------------ 416 (502)
Q Consensus 397 h~------------~~i------------------------~~l~~sp~g~~las~------------------------ 416 (502)
.. .++ ..++++|+..++...
T Consensus 343 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g 422 (668)
T 1kv9_A 343 GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTA 422 (668)
T ss_dssp SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCS
T ss_pred cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccC
Confidence 11 000 126778876665542
Q ss_pred ------------eCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 417 ------------SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 417 ------------s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..+|.|..||..+++.+..+..+. +.....+...|. .++.++.++.++.|+.
T Consensus 423 ~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg-------~vf~g~~dg~l~a~d~ 486 (668)
T 1kv9_A 423 AGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGN-------LVFQGTAAGQMHAYSA 486 (668)
T ss_dssp SCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTT-------EEEEECTTSEEEEEET
T ss_pred ccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCC-------EEEEECCcccchhhhh
Confidence 124789999999999887776332 333334444444 6777888888888863
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0011 Score=70.56 Aligned_cols=225 Identities=11% Similarity=0.069 Sum_probs=142.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeee-cCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV-KGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
...|.++...++|. |-.|+.++-|..|+..+..... ...... ..........|.++...++|.+. .|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt 380 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT---------WSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGT 380 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE---------EC----CCCSSCCSSSCEEEEEECTTSCEE-EEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee---------eccCccccccCCCCCcceEEEEEcCCCCEE-EEe
Confidence 45789999988886 5556666778888876543210 000000 00011123569999998888754 566
Q ss_pred CCCeEEEEECCCceEEEe----cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe--eccCCeEEEEecC
Q 010754 294 YDGQARIWSTNGDLKCTL----SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE--FHSGPTLDVDWRN 367 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~v~~~~ 367 (502)
.++-|..|+........+ ......|.++...+++. |..|+.++.|..+|..+++...... .....|.++...+
T Consensus 381 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~ 459 (781)
T 3v9f_A 381 DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK 459 (781)
T ss_dssp BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT
T ss_pred CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC
Confidence 666788898765433322 12345689998887776 4556777789999987775433211 1235688888887
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEEecC-----CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc---C
Q 010754 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGH-----QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE---H 439 (502)
Q Consensus 368 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-----~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~---h 439 (502)
++.+..++. +.|..|+..+++........ ...|.++...++|.+.+.....| |..||..+++...-... .
T Consensus 460 ~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~~~~~~~l~ 537 (781)
T 3v9f_A 460 NKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRKFNQYEGFC 537 (781)
T ss_dssp TSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEEECTTTTCS
T ss_pred CCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEEccCCCCCC
Confidence 888888877 67889998876544332222 35799999999998765544355 78899877654332111 2
Q ss_pred CCcEEEEEEccCCC
Q 010754 440 SKEIYTIRWSPTGS 453 (502)
Q Consensus 440 ~~~i~~v~~sp~g~ 453 (502)
...|.++...++|.
T Consensus 538 ~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 538 SNTINQIYRSSKGQ 551 (781)
T ss_dssp CSCEEEEEECTTSC
T ss_pred CCeeEEEEECCCCC
Confidence 34588888887775
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00038 Score=74.12 Aligned_cols=217 Identities=12% Similarity=0.094 Sum_probs=140.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|.++...++|.+ ..|+.++-|..|+..++.... ...........|.++...++|.+.+ |+.+
T Consensus 363 ~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~--------------~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~ 426 (781)
T 3v9f_A 363 KVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIY--------------NKENRELLSNSVLCSLKDSEGNLWF-GTYL 426 (781)
T ss_dssp SCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEEC--------------C-----CCCSBEEEEEECTTSCEEE-EETT
T ss_pred cceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEE--------------ccCCCCCCCcceEEEEECCCCCEEE-Eecc
Confidence 56899998887764 455655668888866432110 0000011235699999888887655 7776
Q ss_pred CeEEEEECCCceEEEecC---ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec-----cCCeEEEEecC
Q 010754 296 GQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH-----SGPTLDVDWRN 367 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~~v~~v~~~~ 367 (502)
+-|..++..+.....+.. ....|.++...+++. |..|+. +.|..||..+++........ ...|.++...+
T Consensus 427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~ 504 (781)
T 3v9f_A 427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS 504 (781)
T ss_dssp EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT
T ss_pred CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC
Confidence 778899877555444432 346789998887775 555555 67999998877654433222 35688888888
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEEec----CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc----C
Q 010754 368 NVSFATSSTDNMIYVCKIGENRPIKTFAG----HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE----H 439 (502)
Q Consensus 368 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~----h 439 (502)
++.+..++.++-+..||..+++. ..+.. ....|.++..+++|.+.++.. +|.|..||..+++.. .+.. .
T Consensus 505 ~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~-~~~~~~gl~ 581 (781)
T 3v9f_A 505 EGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ-VFQRKEGLP 581 (781)
T ss_dssp TCCEEEEESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE-EECGGGTCS
T ss_pred CCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE-EccccCCCC
Confidence 88888888756678888766543 33321 135689999999998766544 675588998776543 2221 1
Q ss_pred CCcEEEEEEccCCC
Q 010754 440 SKEIYTIRWSPTGS 453 (502)
Q Consensus 440 ~~~i~~v~~sp~g~ 453 (502)
...|.++...++|.
T Consensus 582 ~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 582 NTHIRAISEDKNGN 595 (781)
T ss_dssp CCCCCEEEECSSSC
T ss_pred CceEEEEEECCCCC
Confidence 23477777777775
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0011 Score=59.47 Aligned_cols=198 Identities=12% Similarity=0.133 Sum_probs=124.0
Q ss_pred EeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 210 ILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
.+.|-.+.+..++|+|++. ++++...++.|...|.. ++.. +.... ......-.|++.+++.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~-------------~~i~l---~g~~D~EGIa~~~~g~~ 83 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLI-------------RTIPL---DFVKDLETIEYIGDNQF 83 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEE-------------EEEEC---SSCSSEEEEEECSTTEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEE-------------EEEec---CCCCChHHeEEeCCCEE
Confidence 4455567899999999765 45556677888888876 4321 11110 11256888999998887
Q ss_pred EEEEECCCeEEEEECCCce----EEEec------CccCCeEEEEEecCCCEEEEEecCCeEEEEEcC---CCceEEEEee
Q 010754 289 LATGSYDGQARIWSTNGDL----KCTLS------KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVK---TEEWKQQFEF 355 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~----~~~~~------~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~ 355 (502)
+++.-.++.+.++++.... ..... ..+.....|+|+|.++.|+++.......+|.+. ....+..+..
T Consensus 84 ~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~ 163 (255)
T 3qqz_A 84 VISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD 163 (255)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred EEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecc
Confidence 6765567888888865321 11111 234456899999999888877765555555543 1111222211
Q ss_pred -------ccCCeEEEEecC--CCEEEEEeCCCeEEEEEcCCCcceEEEecCC---------CcEEEEEEcCCCCEEEEEe
Q 010754 356 -------HSGPTLDVDWRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 356 -------~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~---------~~i~~l~~sp~g~~las~s 417 (502)
....+..+.+.| +..++.+...+.+.++|.. ++++..+.-.. ...-.|+|+++|++.++ |
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 122456777755 3467777888889999966 44555554221 25689999999986555 6
Q ss_pred CCCcEEEEE
Q 010754 418 DDVTAKIWN 426 (502)
Q Consensus 418 ~dg~i~iwd 426 (502)
+-+.++++.
T Consensus 242 E~n~~y~f~ 250 (255)
T 3qqz_A 242 EPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEE
T ss_pred CCceEEEEE
Confidence 666666654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0019 Score=62.54 Aligned_cols=227 Identities=9% Similarity=-0.082 Sum_probs=137.2
Q ss_pred EeccCCCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 210 ILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
.+......+..++|++.+. ++.+-...+.|..+++....... . ... .. .........+++.+.+..
T Consensus 106 ~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-----~-~~~----~~---~~~~~~p~glavD~~~~~ 172 (400)
T 3p5b_L 106 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----S-YDT----VI---SRDIQAPDGLAVDWIHSN 172 (400)
T ss_dssp EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C-----C-CEE----EE---CSSCSCEEEEEEETTTTE
T ss_pred EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-----c-ceE----EE---eCCCCCcccEEEEecCCc
Confidence 3334456788999998655 44454556788888876422000 0 000 00 011235788888885444
Q ss_pred EE-EEECCCeEEEEECCCceEEEecC-ccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 289 LA-TGSYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 289 l~-s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
|+ +-...+.|.+.++++.....+.. .-.....|+++|.+.+|+.+.. .+.|...++........+...-.....|+
T Consensus 173 lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~gla 252 (400)
T 3p5b_L 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 252 (400)
T ss_dssp EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEE
Confidence 44 44566899999998765554432 3345789999997766665553 36888888865443333333334677888
Q ss_pred ecC-CCE-EEEEeCCCeEEEEEcCCCcceEEEec--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCC
Q 010754 365 WRN-NVS-FATSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 365 ~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~--h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~ 440 (502)
+.+ ++. +++-...+.|..+|+........... .-....+|++. .+.++.+-...+.|..+|..+++.+..+....
T Consensus 253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~ 331 (400)
T 3p5b_L 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENL 331 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSC
T ss_pred EEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCC
Confidence 863 444 44445678899999875543333332 23456678774 44556666677889999988887777766444
Q ss_pred CcEEEEE-Ecc
Q 010754 441 KEIYTIR-WSP 450 (502)
Q Consensus 441 ~~i~~v~-~sp 450 (502)
....+|+ ++|
T Consensus 332 ~~p~~i~v~~~ 342 (400)
T 3p5b_L 332 LSPEDMVLFHN 342 (400)
T ss_dssp SCEEEEEEESG
T ss_pred CCCceEEEEee
Confidence 4455654 444
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.23 E-value=4.4e-05 Score=79.54 Aligned_cols=220 Identities=15% Similarity=0.133 Sum_probs=124.5
Q ss_pred EEEEcC-CCCeEEEEeCCC-----------cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 220 ACAWSP-AGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 220 ~~~~~p-~~~~l~sgs~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
++++.| ++++++.|+.+. .+.+||..+++... + ..+. ..+.....++++..+|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~------~--~~~~------~~~~~~~~~~~~~~~g~ 255 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD------R--TVTV------TKHDMFCPGISMDGNGQ 255 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC------C--EEEE------CSCCCSSCEEEECTTSC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe------C--cccC------CCCCCccccccCCCCCC
Confidence 556777 888999887643 57889988765321 0 0110 01122344567788999
Q ss_pred EEEEEEC-CCeEEEEECCCceEEEecCcc--CCeEEEEEecCCCEEEEEe-cC-----CeEEEEEcCCCceEEEEe----
Q 010754 288 LLATGSY-DGQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGS-CD-----KTAIVWDVKTEEWKQQFE---- 354 (502)
Q Consensus 288 ~l~s~~~-dg~i~iwd~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~-~d-----~~i~~wd~~~~~~~~~~~---- 354 (502)
++++|+. ++.+.+||........+.... ..-.+++..++++.++.|+ .+ ..+.+||..+.++...-.
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~ 335 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSG
T ss_pred EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccc
Confidence 9999985 468999997755444332211 1123455667889999888 34 579999998887654210
Q ss_pred -eccCCeEEEEecCCCEEEEEeCC---------CeEEEEEcCCCcceEEEecCC---------CcEEEEEEcC-CCCEEE
Q 010754 355 -FHSGPTLDVDWRNNVSFATSSTD---------NMIYVCKIGENRPIKTFAGHQ---------GEVNCVKWDP-TGSLLA 414 (502)
Q Consensus 355 -~~~~~v~~v~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~h~---------~~i~~l~~sp-~g~~la 414 (502)
.....-..+....+..++.++.+ ..+..||..+.........+. ..-.++.|.. ++++++
T Consensus 336 p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp GGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred ccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 00000001111233345555444 456788887765333222111 1234455543 677888
Q ss_pred EEeCCC-----------cEEEEECCCCeeEEEe--ccCCCc-EEEEEEccCCC
Q 010754 415 SCSDDV-----------TAKIWNMKQDKYVHDL--REHSKE-IYTIRWSPTGS 453 (502)
Q Consensus 415 s~s~dg-----------~i~iwd~~~~~~~~~~--~~h~~~-i~~v~~sp~g~ 453 (502)
.|+.++ .|.+||..+....... ..+... -.+++..|+|.
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~ 468 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS 468 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC
Confidence 887532 6888888776654433 212222 23456677876
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0019 Score=60.41 Aligned_cols=207 Identities=9% Similarity=-0.079 Sum_probs=126.5
Q ss_pred CCceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE-EE
Q 010754 215 TSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TG 292 (502)
Q Consensus 215 ~~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-s~ 292 (502)
...+..++|++.+. ++++-...+.|..+++...... . ....+ .. ........+++.+.+..|+ +-
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-----~--~~~~~--~~----~~~~~p~glavd~~~~~ly~~d 95 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----S--SYDTV--IS----RDIQAPDGLAVDWIHSNIYWTD 95 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------------CEEE--EC----SSCSCCCEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-----c--ccEEE--Ee----CCCCCcCEEEEeecCCeEEEEE
Confidence 45578999998654 5555556688999987652100 0 00000 00 1113457888887555554 44
Q ss_pred ECCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEecC--CeEEEEEcCCCceEEEE-eeccCCeEEEEecC-
Q 010754 293 SYDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQF-EFHSGPTLDVDWRN- 367 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~-~~~~~~v~~v~~~~- 367 (502)
...+.|.+++.++.....+. ..-.....++++|.+..|+.+... +.|..+++.. .....+ ...-.....+++.+
T Consensus 96 ~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gla~d~~ 174 (316)
T 1ijq_A 96 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGITLDLL 174 (316)
T ss_dssp TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEEEEEEETT
T ss_pred CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCceEEEEecc
Confidence 56789999999876544433 233466899999977666655543 6888888754 333333 22334567888874
Q ss_pred CCE-EEEEeCCCeEEEEEcCCCcceEEE-ec--CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 368 NVS-FATSSTDNMIYVCKIGENRPIKTF-AG--HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 368 ~~~-~~~~~~d~~i~i~d~~~~~~~~~~-~~--h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
++. +++-...+.|..+|+.... ...+ .. ......+|++. .+.++++-...+.|..++..+++.+..+.
T Consensus 175 ~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 175 SGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred CCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 444 4455567799999987533 3333 21 23456788886 45666666678899999987777666664
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0014 Score=61.62 Aligned_cols=186 Identities=9% Similarity=0.074 Sum_probs=106.4
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEE-EECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARI-WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE 354 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 354 (502)
.+..+.+.+++..++++ .+|.|.. .|--..-..........+..+.+.+++.+++++...+..+-+|-........-.
T Consensus 123 ~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~ 201 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR 201 (327)
T ss_dssp CEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC
T ss_pred CeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC
Confidence 46677777667666555 4564432 221112222233455678999999988877666444334444421112222222
Q ss_pred eccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEe-c---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 010754 355 FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-G---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 355 ~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~---h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~ 430 (502)
.....+..+.+.+++.+++.+.+|.+++.+...++.-..+. . +...+.++.+.+++.+++++. +|.| ++..+.+
T Consensus 202 ~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG 279 (327)
T 2xbg_A 202 TTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG 279 (327)
T ss_dssp CSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT
T ss_pred CCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC
Confidence 34556788888777778888888888776432232211111 1 223588999999888777665 6666 4555545
Q ss_pred eeEEEec---cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceE
Q 010754 431 KYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFL 472 (502)
Q Consensus 431 ~~~~~~~---~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~ 472 (502)
+.-..+. .....++++.|.+++ .+++++.++.+.
T Consensus 280 ~tW~~~~~~~~~~~~~~~v~~~~~~--------~~~~~G~~G~i~ 316 (327)
T 2xbg_A 280 QTWQQDVDVKKVPSNFYKILFFSPD--------QGFILGQKGILL 316 (327)
T ss_dssp SSCEECGGGTTSSSCCCEEEEEETT--------EEEEECSTTEEE
T ss_pred cccEEcCccCCCCCCeEEEEEECCC--------ceEEEcCCceEE
Confidence 4433333 234568899997654 356666666443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00031 Score=71.59 Aligned_cols=226 Identities=13% Similarity=0.066 Sum_probs=133.3
Q ss_pred CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC------CCeEEE
Q 010754 227 GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY------DGQARI 300 (502)
Q Consensus 227 ~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~------dg~i~i 300 (502)
+..++.++.|+.+..+|..+++..-...... ..........++ + .+..+++++. +|.|..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~--------~~~~~~~~~~P~--v----~~g~v~vg~~~~~~~~~g~v~a 180 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD--------PKVGSTLTQAPF--V----AKDTVLMGCSGAELGVRGAVNA 180 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC--------GGGTCBCCSCCE--E----ETTEEEEECBCGGGTCCCEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC--------CCccceeccCCE--E----ECCEEEEEecCCccCCCCEEEE
Confidence 5577888889999999999887432111000 000000001111 1 1335555554 789999
Q ss_pred EECC-CceEEEecCccCC-------------------------------------e-EEEEEecCCCEEEEEecC-----
Q 010754 301 WSTN-GDLKCTLSKHKGP-------------------------------------I-FSLKWNKKGDYLLTGSCD----- 336 (502)
Q Consensus 301 wd~~-~~~~~~~~~~~~~-------------------------------------v-~~l~~~~~~~~l~s~~~d----- 336 (502)
+|.. ++.+..+...... + ..+++.+....++.+..+
T Consensus 181 ~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~ 260 (571)
T 2ad6_A 181 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWN 260 (571)
T ss_dssp EETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred EECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCcccc
Confidence 9976 5555544321110 0 135667766677666532
Q ss_pred -----------CeEEEEEcCCCceEEEEeecc----------CCeEEEEecCCC----EEEEEeCCCeEEEEEcCCCcce
Q 010754 337 -----------KTAIVWDVKTEEWKQQFEFHS----------GPTLDVDWRNNV----SFATSSTDNMIYVCKIGENRPI 391 (502)
Q Consensus 337 -----------~~i~~wd~~~~~~~~~~~~~~----------~~v~~v~~~~~~----~~~~~~~d~~i~i~d~~~~~~~ 391 (502)
+.|..+|..+|+.+..+.... .++. +....++ .++.++.+|.++++|..+++.+
T Consensus 261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~ 339 (571)
T 2ad6_A 261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLI 339 (571)
T ss_dssp GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEE
Confidence 369999999999988876421 2222 2211123 3667888999999999999887
Q ss_pred EEEecCC-------------CcE--------------------------EEEEEcCCCCEEEEEe---------------
Q 010754 392 KTFAGHQ-------------GEV--------------------------NCVKWDPTGSLLASCS--------------- 417 (502)
Q Consensus 392 ~~~~~h~-------------~~i--------------------------~~l~~sp~g~~las~s--------------- 417 (502)
..+.... .++ ..++++|+..+|+..+
T Consensus 340 w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 419 (571)
T 2ad6_A 340 VAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYR 419 (571)
T ss_dssp EEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred eeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccc
Confidence 7664321 111 2357888877776653
Q ss_pred ----------------------CCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 418 ----------------------DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 418 ----------------------~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.+|.|..||..+++.+.++... .++.+......+ ..+++++.++.+..++
T Consensus 420 ~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~g-------g~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 420 AGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKG-------GLVWYATLDGYLKALD 491 (571)
T ss_dssp TTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETT-------TEEEEECTTSEEEEEE
T ss_pred cCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECC-------CEEEEEcCCCeEEEEE
Confidence 3578999999999888776522 222222222222 3677777778777775
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0012 Score=61.45 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=106.0
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC--CeEEEEEcCCCceEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--KTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~ 352 (502)
.....++|+++|+++++-..++.|..||.++.....+. ....+..+++.++|+.+++.... ..|..+|..+++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 35789999999997777667899999998876544332 23568899999999865554332 2477778778775443
Q ss_pred Eeec-cCCeEEEEecCCCEEE-EEeCCCeEEEEEcCCCcc-eEEEe---------cCCCcEEEEEEcCCCCEEEEE-eCC
Q 010754 353 FEFH-SGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRP-IKTFA---------GHQGEVNCVKWDPTGSLLASC-SDD 419 (502)
Q Consensus 353 ~~~~-~~~v~~v~~~~~~~~~-~~~~d~~i~i~d~~~~~~-~~~~~---------~h~~~i~~l~~sp~g~~las~-s~d 419 (502)
.... ......++..++..++ +...++.|+++|...+.. +.... ..-...+.| +|++++|..+ +..
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 3221 1223344433444444 444688999999875421 11111 111245566 7888766554 457
Q ss_pred CcEEEEECCC-Cee--EEEeccCCCcEEEEEEccCCC
Q 010754 420 VTAKIWNMKQ-DKY--VHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 420 g~i~iwd~~~-~~~--~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+.|..|++.. ++. ...+. .......+++.++|.
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~ 224 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN 224 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC
T ss_pred CEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCC
Confidence 8899999874 321 11111 012345677777775
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00025 Score=73.87 Aligned_cols=175 Identities=11% Similarity=0.107 Sum_probs=111.9
Q ss_pred EEEEECCCCCEEEEEECCCe-------------------EEEEECC-CceEEEecC--cc-------CCeEEEEEecCCC
Q 010754 278 TTLDWNGEGTLLATGSYDGQ-------------------ARIWSTN-GDLKCTLSK--HK-------GPIFSLKWNKKGD 328 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~dg~-------------------i~iwd~~-~~~~~~~~~--~~-------~~v~~l~~~~~~~ 328 (502)
..+++.+++.+++.++.++. |..+|.+ ++.+..+.. |. .++....+..+|+
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 35788888888888887763 8888965 455555543 22 2333333334664
Q ss_pred ---EEEEEecCCeEEEEEcCCCceEEEEeeccC------------CeE------------------------EEEecCC-
Q 010754 329 ---YLLTGSCDKTAIVWDVKTEEWKQQFEFHSG------------PTL------------------------DVDWRNN- 368 (502)
Q Consensus 329 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~------------~v~------------------------~v~~~~~- 368 (502)
.++.++.+|.++++|..+|+.+........ ++. .+++.++
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 688999999999999999998754432210 000 0233332
Q ss_pred CEEEEE------------------------------------eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCE
Q 010754 369 VSFATS------------------------------------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSL 412 (502)
Q Consensus 369 ~~~~~~------------------------------------~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~ 412 (502)
+.+++. ..+|.|..||+.+++.+.++..+. ......+...+.+
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~ 471 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNL 471 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTE
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCE
Confidence 222211 134789999999999887776433 3333344456788
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEeccCCCc-EEEEEEccCCC
Q 010754 413 LASCSDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSPTGS 453 (502)
Q Consensus 413 las~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~v~~sp~g~ 453 (502)
++.++.||.|++||.++++.+..+...... ..-+.+..+|.
T Consensus 472 vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 472 VFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence 999999999999999999999888744311 12234445554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0041 Score=59.02 Aligned_cols=213 Identities=12% Similarity=-0.024 Sum_probs=125.0
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-C
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-Y 294 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~ 294 (502)
+...|.+..+++ +|+.+. ...|+..++...... . +. .....+..++|++.+..|+.+. .
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~-----------~---~~----~~~~~~~~l~~d~~~~~ly~~D~~ 93 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYT-----------L---LL----NNLENAIALDFHHRRELVFWSDVT 93 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEE-----------E---EE----CSCSCEEEEEEETTTTEEEEEETT
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeE-----------E---ee----cCCCceEEEEEeccccEEEEEecc
Confidence 334566666644 444333 355777776543210 0 10 1123588999998666665554 5
Q ss_pred CCeEEEEECCCceEEEe-cCccCCeEEEEEecCCCEE-EEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CCE-
Q 010754 295 DGQARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVS- 370 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~-~~~~~~v~~l~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~- 370 (502)
.+.|..++.++.....+ .........+++.+.+..| ++-...+.|.+.++........+.........+++.+ ++.
T Consensus 94 ~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 94 LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTI 173 (349)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEE
T ss_pred CCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeE
Confidence 68899999887544333 2223445789999755555 4555578999999875543333333334567788765 444
Q ss_pred EEEEeCC-CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEeccCCCcEEEEEE
Q 010754 371 FATSSTD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (502)
Q Consensus 371 ~~~~~~d-~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~ 448 (502)
+++-... +.|..+++............-...+.|+++|++..|..+. ..+.|..+|+........+...-.....|++
T Consensus 174 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp EEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE
Confidence 4444444 7888888765433222222334678999998766665554 4678999998654332223222334566666
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0015 Score=63.99 Aligned_cols=197 Identities=12% Similarity=0.125 Sum_probs=116.9
Q ss_pred ceEEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 217 EVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 217 ~V~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
....++|+| ++..|..+...+.|+.+|+.++... . +.. .......++|+++|++|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-----------~---~~~----~~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-----------T---VYS----GLSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-----------E---EEC----CCSCEEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-----------E---Eec----CCCCcceEEEeCCCCEEEEEeCC
Confidence 457889998 4444555544478888888765321 1 111 23458899999999966666652
Q ss_pred -C----eEEEEECCCceE--EEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEEee-ccCCeEEEEec
Q 010754 296 -G----QARIWSTNGDLK--CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEF-HSGPTLDVDWR 366 (502)
Q Consensus 296 -g----~i~iwd~~~~~~--~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~v~~~ 366 (502)
+ .+.+++..+... ..+.. ......++++| ++..+++-..++.|..++..++.....+.. .......++++
T Consensus 200 ~~~~~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~ 278 (430)
T 3tc9_A 200 NNNDRPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH 278 (430)
T ss_dssp SCTTSEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEEC
T ss_pred CCcccceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEc
Confidence 2 344455444322 22222 23457788999 666666666778999999887654332222 22346789998
Q ss_pred CCCE--EEEEeCCCeEEEEEcCCC--cc--eEEEecC---------------CCcEE-EEEEc--------CCCCEEEEE
Q 010754 367 NNVS--FATSSTDNMIYVCKIGEN--RP--IKTFAGH---------------QGEVN-CVKWD--------PTGSLLASC 416 (502)
Q Consensus 367 ~~~~--~~~~~~d~~i~i~d~~~~--~~--~~~~~~h---------------~~~i~-~l~~s--------p~g~~las~ 416 (502)
+++. +++-...+.|..++.... .. +..+.+. -.... .++.. ++|.++++=
T Consensus 279 pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD 358 (430)
T 3tc9_A 279 PSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCD 358 (430)
T ss_dssp TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEE
T ss_pred CCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEE
Confidence 7654 455557788999887532 11 2233221 01233 45553 446666666
Q ss_pred eCCCcEEEEECCCCeeE
Q 010754 417 SDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 417 s~dg~i~iwd~~~~~~~ 433 (502)
...+.|+.++ ..+...
T Consensus 359 ~~n~~I~~i~-~~G~v~ 374 (430)
T 3tc9_A 359 RENHCIRILT-PQGRVT 374 (430)
T ss_dssp GGGTEEEEEC-TTSEEE
T ss_pred CCCcEEEEEC-CCCcEE
Confidence 6677888888 455443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00015 Score=76.62 Aligned_cols=194 Identities=13% Similarity=0.046 Sum_probs=111.4
Q ss_pred CeEEEEEC-CCCCEEEEEEC-CC----eEEEEECCCc-eEEEecCccCCeEEEEEecCCCEEEEEecC-----CeEEEEE
Q 010754 276 DVTTLDWN-GEGTLLATGSY-DG----QARIWSTNGD-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-----KTAIVWD 343 (502)
Q Consensus 276 ~v~~l~~s-~~g~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-----~~i~~wd 343 (502)
.+...+|| |||++||.+.. +| .|+++|+.+. .... ..-......+.|+|+|+.|+....| ..|++++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-DKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-CCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-ccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57889999 99998886543 33 4999998765 4211 0011123568999999988877665 3688888
Q ss_pred cCCCce--EEEEee-ccCCeEEEEecCCCE-EEEEe---CCCeEEEEEcCCCc-ce--EEE-ecCCCcEEEEEEcCCCCE
Q 010754 344 VKTEEW--KQQFEF-HSGPTLDVDWRNNVS-FATSS---TDNMIYVCKIGENR-PI--KTF-AGHQGEVNCVKWDPTGSL 412 (502)
Q Consensus 344 ~~~~~~--~~~~~~-~~~~v~~v~~~~~~~-~~~~~---~d~~i~i~d~~~~~-~~--~~~-~~h~~~i~~l~~sp~g~~ 412 (502)
+.++.. ...+.. .......+.|++++. ++..+ ....|+++|+.++. .. ..+ .........+.|+..+.+
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 877642 233332 223467788988775 33332 24468889988752 22 333 333445566666544444
Q ss_pred EEEEeCC----CcEEEEECCCCeeEEE-eccCCC--cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 413 LASCSDD----VTAKIWNMKQDKYVHD-LREHSK--EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 413 las~s~d----g~i~iwd~~~~~~~~~-~~~h~~--~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
++....+ ..|..+++.++..... +..+.. .+..+.| .+. ..++....++..++|..++
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~------~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSN------YLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSS------EEEEEEEETTEEEEEEEEC
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECC------EEEEEEEeCCEEEEEEEec
Confidence 4454443 2567777765222122 223333 3444444 333 2344455567777776553
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0017 Score=60.83 Aligned_cols=218 Identities=9% Similarity=-0.014 Sum_probs=134.0
Q ss_pred CceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE-EEEE
Q 010754 216 SEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL-ATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l-~s~~ 293 (502)
..+.+++|++. +.++.+-...+.|..+++....... . .... .......+++.+.+..| ++-.
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~--------~-~~~~-------~l~~p~glavd~~~g~ly~~d~ 98 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--------N-VVVS-------GLLSPDGLACDWLGEKLYWTDS 98 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC--------E-EEEE-------CCSCCCEEEEETTTTEEEEEET
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE--------E-EEcC-------CCCCccEEEEEcCCCeEEEEEC
Confidence 34678999985 5555565667888888876542100 0 0000 11246678888755444 4445
Q ss_pred CCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CC
Q 010754 294 YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV 369 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~ 369 (502)
..+.|.++++++.....+. ........+++.|.+..|+.+.. .+.|...++............-.....+++.+ ++
T Consensus 99 ~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~ 178 (318)
T 3sov_A 99 ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQ 178 (318)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCC
Confidence 5689999999876544442 33455689999997666666553 57888888764332222222334567888875 44
Q ss_pred E-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEE-
Q 010754 370 S-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR- 447 (502)
Q Consensus 370 ~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~- 447 (502)
. +++-+..+.|..+++........+.+......++++.. +.++.+-...+.|..++..+++....+........+|+
T Consensus 179 ~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~v 257 (318)
T 3sov_A 179 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHA 257 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECCCSSCCCEEE
T ss_pred EEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEeCCCCCCcEEEE
Confidence 4 44555678899999875433333333445677888863 44555666678999999888876666653322334444
Q ss_pred Ecc
Q 010754 448 WSP 450 (502)
Q Consensus 448 ~sp 450 (502)
++|
T Consensus 258 ~~~ 260 (318)
T 3sov_A 258 FSQ 260 (318)
T ss_dssp ECG
T ss_pred ecc
Confidence 444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0017 Score=63.70 Aligned_cols=196 Identities=9% Similarity=0.084 Sum_probs=116.9
Q ss_pred CceEEEEEcCC--CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 216 SEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~--~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
.....++|+|+ ...|..+...+.|+.++..++.... +.. .......++|+++|+ |+.+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~--------------~~~----~~~~P~giavd~dG~-lyVad 199 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI--------------KTT----NIGQCADVNFTLNGD-MVVVD 199 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE--------------ECC----CCSCEEEEEECTTCC-EEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE--------------eec----CCCCccEEEECCCCC-EEEEc
Confidence 34578999995 3344444333889999987654211 111 234589999999999 44444
Q ss_pred CCC-----eEEEEECCCceE--EEecCccCCeEEEEEec-CCCEEEEEecCCeEEEEEcCCCceEEEEeec--cCCeEEE
Q 010754 294 YDG-----QARIWSTNGDLK--CTLSKHKGPIFSLKWNK-KGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH--SGPTLDV 363 (502)
Q Consensus 294 ~dg-----~i~iwd~~~~~~--~~~~~~~~~v~~l~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~v 363 (502)
..+ .+...+..+... ..+. .-.....++++| ++..+++-..++.|+.+|..++.....+... ......+
T Consensus 200 ~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 200 DQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp CCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEE
T ss_pred CCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccE
Confidence 322 233333322111 1111 223456788999 6666656556789999998877763333221 1223468
Q ss_pred EecCCCE--EEEEeCCCeEEEEEcCC--Ccc--eEEEecC---------------CCcEEEEEE---------cCCCCEE
Q 010754 364 DWRNNVS--FATSSTDNMIYVCKIGE--NRP--IKTFAGH---------------QGEVNCVKW---------DPTGSLL 413 (502)
Q Consensus 364 ~~~~~~~--~~~~~~d~~i~i~d~~~--~~~--~~~~~~h---------------~~~i~~l~~---------sp~g~~l 413 (502)
++++++. +++-...+.|+.++... +.. ...+.+. -.....+++ .++|.++
T Consensus 279 a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly 358 (433)
T 4hw6_A 279 VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY 358 (433)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence 8877653 45555678899988653 221 1233222 124677999 7788777
Q ss_pred EEEeCCCcEEEEECCCCee
Q 010754 414 ASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 414 as~s~dg~i~iwd~~~~~~ 432 (502)
++-...+.|+.++. ++..
T Consensus 359 vaD~~n~~I~~~~~-~G~v 376 (433)
T 4hw6_A 359 FCDRDSHTVRVLTP-EGRV 376 (433)
T ss_dssp EEETTTTEEEEECT-TSEE
T ss_pred EEECCCCEEEEECC-CCCE
Confidence 77777888999984 5543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00012 Score=76.17 Aligned_cols=222 Identities=9% Similarity=0.057 Sum_probs=123.7
Q ss_pred CceEEEEEcCCCCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-
Q 010754 216 SEVCACAWSPAGSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS- 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~- 293 (502)
....++++.+++++++.|+. +..+.+||..+.+.... .... ....-.+++..++|++++.|+
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-----------~~~~-----~~R~~~s~~~~~dg~iyv~GG~ 306 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-----------PDMQ-----VARGYQSSATMSDGRVFTIGGS 306 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-----------CCCS-----SCCSSCEEEECTTSCEEEECCC
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-----------CCCC-----ccccccceEEecCCeEEEEeCc
Confidence 33445778889999999984 45899999876542210 0000 011123455567899999998
Q ss_pred CC-----CeEEEEECCCceEEEecCc-----cCCeEEEEEecCCCEEEEEecC---------CeEEEEEcCCCceEEEEe
Q 010754 294 YD-----GQARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSCD---------KTAIVWDVKTEEWKQQFE 354 (502)
Q Consensus 294 ~d-----g~i~iwd~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~ 354 (502)
.+ ..+.+||........+... ...-....+..++..++.++.+ ..+..||..+........
T Consensus 307 ~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~ 386 (656)
T 1k3i_A 307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG 386 (656)
T ss_dssp CCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred ccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC
Confidence 44 5789999876554443210 0000001122344444555444 457889988877654433
Q ss_pred eccC---------CeEEEEe--cCCCEEEEEeCCC-----------eEEEEEcCCCcceEEE--ecCCCc-EEEEEEcCC
Q 010754 355 FHSG---------PTLDVDW--RNNVSFATSSTDN-----------MIYVCKIGENRPIKTF--AGHQGE-VNCVKWDPT 409 (502)
Q Consensus 355 ~~~~---------~v~~v~~--~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~--~~h~~~-i~~l~~sp~ 409 (502)
.... .-.++.+ ..+..+++|+.++ .|.+||..+..-.... ..+... -.+++..|+
T Consensus 387 ~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~ 466 (656)
T 1k3i_A 387 KRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPD 466 (656)
T ss_dssp ECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTT
T ss_pred ccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCC
Confidence 2221 2334444 2455566666432 6778887766543322 112222 234566789
Q ss_pred CCEEEEEeCC-----------CcEEEEECCCCeeEEE--eccCCCcEEEEEEccCCC
Q 010754 410 GSLLASCSDD-----------VTAKIWNMKQDKYVHD--LREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 410 g~~las~s~d-----------g~i~iwd~~~~~~~~~--~~~h~~~i~~v~~sp~g~ 453 (502)
|++++.|+.+ ..+.+||..+.+.... +...........+.|+|+
T Consensus 467 g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~ 523 (656)
T 1k3i_A 467 GSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGR 523 (656)
T ss_dssp SCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSC
T ss_pred CCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcE
Confidence 9999999854 4689999887664321 111122223455678887
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00077 Score=68.68 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=105.9
Q ss_pred EEEECCCCCEEEEEECC----------------CeEEEEECC-CceEEEecC--c--------cCCeEEEEEecCCC---
Q 010754 279 TLDWNGEGTLLATGSYD----------------GQARIWSTN-GDLKCTLSK--H--------KGPIFSLKWNKKGD--- 328 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~d----------------g~i~iwd~~-~~~~~~~~~--~--------~~~v~~l~~~~~~~--- 328 (502)
.+++.++...++.++.+ +.|..+|.. ++.+..+.. | ..++. +....+|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 35566766677666532 358888876 455554432 2 12222 22234674
Q ss_pred EEEEEecCCeEEEEEcCCCceEEEEeecc-------------CCeE--------------------------EEEecCC-
Q 010754 329 YLLTGSCDKTAIVWDVKTEEWKQQFEFHS-------------GPTL--------------------------DVDWRNN- 368 (502)
Q Consensus 329 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------------~~v~--------------------------~v~~~~~- 368 (502)
.++.++.+|.++++|..+|+.+..+.... .++. .+++.++
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 56788899999999999999887765332 0110 1233332
Q ss_pred CEEEEEe-------------------------------------CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC
Q 010754 369 VSFATSS-------------------------------------TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS 411 (502)
Q Consensus 369 ~~~~~~~-------------------------------------~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~ 411 (502)
+.+++.. .++.|..||..+++.+.++... ..+.+..+...+.
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg 476 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGG 476 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTT
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCC
Confidence 3333322 3578999999999988777632 2232222333466
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEeccCCCc-EEEEEEccCCC
Q 010754 412 LLASCSDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSPTGS 453 (502)
Q Consensus 412 ~las~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~v~~sp~g~ 453 (502)
+++.++.||.|+.||.++++.+..+...... -..+.+..+|.
T Consensus 477 ~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 477 LVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence 7778999999999999999999888733211 12233556664
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0035 Score=59.56 Aligned_cols=222 Identities=10% Similarity=0.099 Sum_probs=118.0
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC---CCEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLAT 291 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~s 291 (502)
-..-..++|.|+|+++++ ..+|.|.+++ ++.. ..+.... ...........|+|+|+ +..|++
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-----------~~~~~~~-v~~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-----------STYAELS-VYHRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-----------EEEEECC-CCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-----------cEeecce-EeecCCCCceeEEECCCCCCCCEEEE
Confidence 345679999999986555 5669999888 3321 0111111 11112346899999998 555555
Q ss_pred EEC-C-----CeEEEEECCCc------eE-EEec---CccCCeEEEEEecCCCEEEEEec-------------CCeEEEE
Q 010754 292 GSY-D-----GQARIWSTNGD------LK-CTLS---KHKGPIFSLKWNKKGDYLLTGSC-------------DKTAIVW 342 (502)
Q Consensus 292 ~~~-d-----g~i~iwd~~~~------~~-~~~~---~~~~~v~~l~~~~~~~~l~s~~~-------------d~~i~~w 342 (502)
+.. . +.|..|+..+. .+ ..+. ........|+|.|+|...++.+. .|.|.-+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri 174 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRL 174 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred EEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence 443 2 56777776542 11 1122 11123368999999976665432 2456666
Q ss_pred EcCCC------------ceEEEEeeccCCeEEEEecC-CCEEEEEe-CCCe--------EEEEEcCC-------------
Q 010754 343 DVKTE------------EWKQQFEFHSGPTLDVDWRN-NVSFATSS-TDNM--------IYVCKIGE------------- 387 (502)
Q Consensus 343 d~~~~------------~~~~~~~~~~~~v~~v~~~~-~~~~~~~~-~d~~--------i~i~d~~~------------- 387 (502)
+.... .....+.........++|.+ .+.+.++. ..+. |.+.....
T Consensus 175 ~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 175 TPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND 254 (352)
T ss_dssp CTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred cCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence 65420 01111111112245677776 44444433 2222 33332211
Q ss_pred ---CcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee------EEEeccCCCcEEEEEEccCCC
Q 010754 388 ---NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY------VHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 388 ---~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~------~~~~~~h~~~i~~v~~sp~g~ 453 (502)
..++..+. +......++| .+|.++++.-..+.|...++..... ...+-.-...+..+++.|||.
T Consensus 255 ~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 327 (352)
T 2ism_A 255 PRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA 327 (352)
T ss_dssp TTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC
T ss_pred CCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc
Confidence 12333442 2335677888 4677766666667777777653321 122212235789999999997
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0063 Score=58.63 Aligned_cols=211 Identities=12% Similarity=-0.023 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE-ECCC
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-SYDG 296 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~~dg 296 (502)
-.|.+..+. .+|+.+. ...|+.+++...... . +. .....+..++|++.+..|+.+ ...+
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~-----------~---~~----~~~~~~~gl~~d~~~~~ly~~D~~~~ 138 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYT-----------L---LL----NNLENAIALDFHHRRELVFWSDVTLD 138 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCE-----------E---EE----CSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcEE-----------E---Ee----cCCCccEEEEEecCCCeEEEEeCCCC
Confidence 345555553 3444433 356888887654321 0 00 112458899999866655555 4568
Q ss_pred eEEEEECCCceEEEe-cCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CCE-EE
Q 010754 297 QARIWSTNGDLKCTL-SKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NVS-FA 372 (502)
Q Consensus 297 ~i~iwd~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~~-~~ 372 (502)
.|..++.++.....+ .........+++.+.+..|+ +-...+.|.+.++........+.........++..+ ++. ++
T Consensus 139 ~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~ 218 (386)
T 3v65_B 139 RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 218 (386)
T ss_dssp EEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred cEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEE
Confidence 999999887654433 22233457788987655554 545567899988865443333333334567777764 344 44
Q ss_pred EEeCC-CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeccCCCcEEEEEE
Q 010754 373 TSSTD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448 (502)
Q Consensus 373 ~~~~d-~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~-s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~ 448 (502)
+-... +.|..+++............-...+.|+|+|++..|..+ +..+.|..+|+........+.........|++
T Consensus 219 td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav 296 (386)
T 3v65_B 219 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV 296 (386)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE
T ss_pred eccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE
Confidence 44444 788888876544333333334568899999876666555 45678999997644333233322334566666
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0013 Score=61.38 Aligned_cols=191 Identities=15% Similarity=0.271 Sum_probs=118.2
Q ss_pred CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC----CCC---EEEEEE-C--C
Q 010754 226 AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG----EGT---LLATGS-Y--D 295 (502)
Q Consensus 226 ~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~----~g~---~l~s~~-~--d 295 (502)
..++++.....+-+.+||+ +++.+..+.. +.+..+..-| .|+ ++++.. . +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-------------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~ 98 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-------------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGK 98 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC-------------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC-------------------CCcccEEEecccccCCceEeEEEEeCCCCCC
Confidence 3456666667788999999 5554332221 2234444333 222 223333 3 5
Q ss_pred CeEEEEECC--CceEEEecC------cc-CCeEEEEE--ecC-CC-EEEEEecCCeEEEEEcC-------CCceEEEEee
Q 010754 296 GQARIWSTN--GDLKCTLSK------HK-GPIFSLKW--NKK-GD-YLLTGSCDKTAIVWDVK-------TEEWKQQFEF 355 (502)
Q Consensus 296 g~i~iwd~~--~~~~~~~~~------~~-~~v~~l~~--~~~-~~-~l~s~~~d~~i~~wd~~-------~~~~~~~~~~ 355 (502)
+.|++|+++ ...+..+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.+++|..
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l 178 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM 178 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred CeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence 789999763 334444421 11 56777888 664 43 68888889999999982 3355667665
Q ss_pred ccCCeEEEEec-CCCEEEEEeCCCeEEEEEcC-----CCcceEEEe-cC-CCcEEEEEE--cCCCC-EEEEEe-CCCcEE
Q 010754 356 HSGPTLDVDWR-NNVSFATSSTDNMIYVCKIG-----ENRPIKTFA-GH-QGEVNCVKW--DPTGS-LLASCS-DDVTAK 423 (502)
Q Consensus 356 ~~~~v~~v~~~-~~~~~~~~~~d~~i~i~d~~-----~~~~~~~~~-~h-~~~i~~l~~--sp~g~-~las~s-~dg~i~ 423 (502)
. +.+-.+... ..+.++.+-.+..|..|+.. +.+.+..+. ++ ...+..|++ .++++ +|++++ .++++.
T Consensus 179 g-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~ 257 (355)
T 3amr_A 179 N-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA 257 (355)
T ss_dssp S-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred C-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence 4 455556554 46778888888777777755 234454442 22 246888888 45555 555544 678999
Q ss_pred EEECC-CCeeEEEec
Q 010754 424 IWNMK-QDKYVHDLR 437 (502)
Q Consensus 424 iwd~~-~~~~~~~~~ 437 (502)
+||.. +.+.+..|.
T Consensus 258 Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 258 IYDRQGKNKYVADFR 272 (355)
T ss_dssp EEESSTTCCEEEEEE
T ss_pred EEECCCCCcEEEEEE
Confidence 99996 677777774
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00095 Score=68.13 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=91.0
Q ss_pred EEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE------CCCeEEEEEC
Q 010754 230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS------YDGQARIWST 303 (502)
Q Consensus 230 l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~------~dg~i~iwd~ 303 (502)
|+.++.|+.|..+|..+++..-...... ..........++. .++ .+++++ .+|.|+.+|.
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~--------~~~~~~~~ssP~v-----~~g-~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSD--------IKVGSTLTIAPYV-----VKD-KVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC--------GGGTCBCCSCCEE-----ETT-EEEECCBCGGGTCCCEEEEEET
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCC--------CCccceeecCCEE-----ECC-EEEEEecccccCCCCeEEEEEC
Confidence 7888889999999999887532111000 0000000011111 133 455554 3799999997
Q ss_pred C-CceEEEecCccCC-------------------------------------e-EEEEEecCCCEEEEEecC--------
Q 010754 304 N-GDLKCTLSKHKGP-------------------------------------I-FSLKWNKKGDYLLTGSCD-------- 336 (502)
Q Consensus 304 ~-~~~~~~~~~~~~~-------------------------------------v-~~l~~~~~~~~l~s~~~d-------- 336 (502)
. ++.+..+...... + ..+++.+....++.+..+
T Consensus 190 ~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 6 5555544322110 0 134566777777777655
Q ss_pred --------CeEEEEEcCCCceEEEEeeccC----------CeEEEEe--cCC---CEEEEEeCCCeEEEEEcCCCcceEE
Q 010754 337 --------KTAIVWDVKTEEWKQQFEFHSG----------PTLDVDW--RNN---VSFATSSTDNMIYVCKIGENRPIKT 393 (502)
Q Consensus 337 --------~~i~~wd~~~~~~~~~~~~~~~----------~v~~v~~--~~~---~~~~~~~~d~~i~i~d~~~~~~~~~ 393 (502)
+.|..+|..+|+.+..+..... ++. +.. ..+ ..++.++.+|.++++|..+++.+..
T Consensus 270 r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp SCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 3899999999999888775321 222 222 123 2466788999999999999988776
Q ss_pred Ee
Q 010754 394 FA 395 (502)
Q Consensus 394 ~~ 395 (502)
..
T Consensus 349 ~~ 350 (599)
T 1w6s_A 349 NK 350 (599)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.011 Score=55.14 Aligned_cols=163 Identities=9% Similarity=0.000 Sum_probs=98.0
Q ss_pred EEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecCCeEEEEEcCC----CceEEEEeeccCCeEEE
Q 010754 289 LATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKT----EEWKQQFEFHSGPTLDV 363 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~~----~~~~~~~~~~~~~v~~v 363 (502)
|+.+. ...|+..|+.+.....+......+.++.|++.+..|+.+ ...+.|..+++.. ......+.........+
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 82 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred EEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence 44443 356888888765443333344567899999876655544 4568999999876 22222222121233444
Q ss_pred Ee--cCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCeeEEEe-cc
Q 010754 364 DW--RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-VTAKIWNMKQDKYVHDL-RE 438 (502)
Q Consensus 364 ~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~-d-g~i~iwd~~~~~~~~~~-~~ 438 (502)
++ ..+..+++-...+.|.++++........+.........++++|.+..|..+.. . +.|...++.. +....+ ..
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~ 161 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE 161 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECS
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEEC
Confidence 44 45555666677889999998754433333334457889999997665555443 3 6788888753 332332 22
Q ss_pred CCCcEEEEEEccCCC
Q 010754 439 HSKEIYTIRWSPTGS 453 (502)
Q Consensus 439 h~~~i~~v~~sp~g~ 453 (502)
.-.....|+|+|++.
T Consensus 162 ~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 162 NIQWPNGITLDLLSG 176 (316)
T ss_dssp SCSCEEEEEEETTTT
T ss_pred CCCCceEEEEeccCC
Confidence 234578999998876
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.015 Score=54.47 Aligned_cols=218 Identities=10% Similarity=0.054 Sum_probs=118.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
...+.++.|.+.+..+++| .+|.| +.....++.=.. ...........+.+|.+++ +..++ ++.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~-------------~~~~~~~~~~~~~~i~~~~-~~~~~-~g~ 97 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEP-------------RTLVLDHSDYRFNSVSFQG-NEGWI-VGE 97 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEE-------------CCCCCSCCCCEEEEEEEET-TEEEE-EEE
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeE-------------CCCCCCCCCccEEEEEecC-CeEEE-EEC
Confidence 3468899998777777754 56754 233332321000 0000011133588888876 44444 455
Q ss_pred CCeEEEEECC-CceEEEec---CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC-ceEEEEeeccCCeEEEEecCCC
Q 010754 295 DGQARIWSTN-GDLKCTLS---KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-EWKQQFEFHSGPTLDVDWRNNV 369 (502)
Q Consensus 295 dg~i~iwd~~-~~~~~~~~---~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~v~~~~~~ 369 (502)
.|.|.. ..+ +..-.... .+...+..+.+.+++..++++ .++.|..- ...+ .+..........+..+.+.+++
T Consensus 98 ~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 98 PPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp TTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred CCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCC
Confidence 665544 333 33222222 233557788887766655554 45654322 2223 2333333445578888888777
Q ss_pred EEEEEeCCCeEEEEEcCCCcceEEE-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-c---CCCcEE
Q 010754 370 SFATSSTDNMIYVCKIGENRPIKTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-E---HSKEIY 444 (502)
Q Consensus 370 ~~~~~~~d~~i~i~d~~~~~~~~~~-~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-~---h~~~i~ 444 (502)
.+++.+.++.++.-.-..+..-..+ ......+..+.+.+++.+++. +.+|.+++++...++.-..+. . +...+.
T Consensus 175 ~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 175 EYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp CEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred cEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 7777777776654432112221111 234567889999999876654 567888877533344333222 1 223588
Q ss_pred EEEEccCCC
Q 010754 445 TIRWSPTGS 453 (502)
Q Consensus 445 ~v~~sp~g~ 453 (502)
+++|.|++.
T Consensus 254 ~v~~~~~~~ 262 (327)
T 2xbg_A 254 DLAYRTPNE 262 (327)
T ss_dssp EEEESSSSC
T ss_pred EEEecCCCE
Confidence 999998765
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.011 Score=58.39 Aligned_cols=203 Identities=8% Similarity=0.031 Sum_probs=118.6
Q ss_pred ceEEEEEcCC--CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE-------CCCCC
Q 010754 217 EVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW-------NGEGT 287 (502)
Q Consensus 217 ~V~~~~~~p~--~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~-------s~~g~ 287 (502)
....|+|+|. ++++++-...+.|++.|+.++... . +.............++| +++|+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-----------~---l~~~~~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-----------S---PLNINTIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-----------E---EECCTTSSCSBEEEEEECCCBTTTBCTTC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-----------E---EEccCccccCCCcEEEEeecccccCCCCC
Confidence 3568999993 445555544567888888775421 1 11111112345899999 99999
Q ss_pred EEEEEECCC-------eEEEEECCC--ceE-----EEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEEcC-------
Q 010754 288 LLATGSYDG-------QARIWSTNG--DLK-----CTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWDVK------- 345 (502)
Q Consensus 288 ~l~s~~~dg-------~i~iwd~~~--~~~-----~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd~~------- 345 (502)
.|+++...+ .|.+++... ... ..+.... ....++++|++ .++++-..++.|..+|+.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~ 284 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK 284 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence 777776654 266665333 221 2222222 34677889954 555556677889999997
Q ss_pred CCce-----------EEE-Eee-ccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCC--Ccc--eEEEecC---C-----
Q 010754 346 TEEW-----------KQQ-FEF-HSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGE--NRP--IKTFAGH---Q----- 398 (502)
Q Consensus 346 ~~~~-----------~~~-~~~-~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~--~~~--~~~~~~h---~----- 398 (502)
++.. ... +.. .......|+|++++. +++-...+.|+.++... +.. ..++.+. .
T Consensus 285 tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG 364 (496)
T 3kya_A 285 NGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDD 364 (496)
T ss_dssp TTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCC
T ss_pred CceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCC
Confidence 5553 222 222 223467899988764 45556778898876543 221 1233332 1
Q ss_pred -------CcEE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 399 -------GEVN-CVKWD-------PTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 399 -------~~i~-~l~~s-------p~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
.... .++.. ++|.++++=+..+.|+.++ .++. +.++
T Consensus 365 ~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~Ti 415 (496)
T 3kya_A 365 VGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTY 415 (496)
T ss_dssp BGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEE
T ss_pred cccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEE
Confidence 1244 45554 5667777767788899998 4553 3444
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0078 Score=63.42 Aligned_cols=213 Identities=8% Similarity=-0.093 Sum_probs=127.3
Q ss_pred eccCCCceEEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 211 LEGHTSEVCACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
+......+..++|++. +.++++-...+.|+.+++....... . ....+ . ........|++.+.+..|
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~-----~-~~~vi----~---~~l~~P~GLAvD~~~~~L 485 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----S-YDTVI----S---RDIQAPDGLAVDWIHSNI 485 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------CEEEE----C---SSCSCCCEEEEETTTTEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-----c-eeEEE----e---cCCCCcceeeeeecCCcE
Confidence 3334456788999985 4455555566778888876432100 0 00000 0 012346778888877655
Q ss_pred EEE-ECCCeEEEEECCCceEEEecC-ccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEEe
Q 010754 290 ATG-SYDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365 (502)
Q Consensus 290 ~s~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~ 365 (502)
+.+ ...+.|.+.++++.....+.. .-.....|+++|.+.+|+.+.. .+.|...++........+.........|++
T Consensus 486 Y~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLav 565 (791)
T 3m0c_C 486 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 565 (791)
T ss_dssp EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEE
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEE
Confidence 555 456899999999876655532 3345789999997666665553 268888888654443333333345667776
Q ss_pred c-CCC-EEEEEeCCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 366 R-NNV-SFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 366 ~-~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
. ..+ .+++-...+.|..+++........+... -....+|++.. +.++++-...+.|...|..+++.+..+.
T Consensus 566 D~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 566 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 5 334 4455556678999998665444444332 23456777743 3444555567888888887776665554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.019 Score=54.50 Aligned_cols=241 Identities=10% Similarity=0.068 Sum_probs=128.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC---CCEEEEE
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLATG 292 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~s~ 292 (502)
.....|+|.|+|+.|+.+...|.|++++.. +.....+.. ..............|+|+|+ +..|+++
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~----------~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSG----------VPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBS----------CCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecC----------CcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 456799999999834444567999988743 221110000 00001112345789999996 4444444
Q ss_pred E-C-------CCeEEEEECCCc------eEEEecC------ccCCeEEEEEecCCCEEEEEec-------------CCeE
Q 010754 293 S-Y-------DGQARIWSTNGD------LKCTLSK------HKGPIFSLKWNKKGDYLLTGSC-------------DKTA 339 (502)
Q Consensus 293 ~-~-------dg~i~iwd~~~~------~~~~~~~------~~~~v~~l~~~~~~~~l~s~~~-------------d~~i 339 (502)
. . ...|..|+.+.. ....+.. .......|.|.|+|.+.++.+. .|.|
T Consensus 87 ~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I 166 (353)
T 2g8s_A 87 YSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKL 166 (353)
T ss_dssp EEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEE
T ss_pred EeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEE
Confidence 3 2 234666655421 1111111 1112357999999965555433 2467
Q ss_pred EEEEcCCCc------------eEEEEeeccCCeEEEEecC-CCEEEEEeCCC----eEEEEEcC--------C-------
Q 010754 340 IVWDVKTEE------------WKQQFEFHSGPTLDVDWRN-NVSFATSSTDN----MIYVCKIG--------E------- 387 (502)
Q Consensus 340 ~~wd~~~~~------------~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~----~i~i~d~~--------~------- 387 (502)
.-+|....- ....+.........++|.+ .+.+.++.... .|.+.... .
T Consensus 167 ~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 167 VRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp EEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred EEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 777754320 1112222223467788877 56655543321 22221100 0
Q ss_pred --------------CcceEEEecCCCcEEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeEEE--e-ccCCCcE
Q 010754 388 --------------NRPIKTFAGHQGEVNCVKWDP-------TGSLLASCSDDVTAKIWNMKQDKYVHD--L-REHSKEI 443 (502)
Q Consensus 388 --------------~~~~~~~~~h~~~i~~l~~sp-------~g~~las~s~dg~i~iwd~~~~~~~~~--~-~~h~~~i 443 (502)
..++..+. +...+..+.|.. +|.++++.-..+.|...++..++.+.. + ......+
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp 325 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRI 325 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCE
T ss_pred CccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCce
Confidence 11233333 234577888864 577777776778888888776654432 2 2223479
Q ss_pred EEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 444 YTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 444 ~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..|++.|||. |++++.....+||..
T Consensus 326 ~~v~~~pdG~--------lyv~td~~~g~I~ri 350 (353)
T 2g8s_A 326 RDVRTGPDGY--------LYVLTDESSGELLKV 350 (353)
T ss_dssp EEEEECTTSC--------EEEEECSTTEEEEEE
T ss_pred eEEEECCCCc--------EEEEEeCCCCEEEEE
Confidence 9999999997 455555466677653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0011 Score=67.74 Aligned_cols=173 Identities=13% Similarity=0.165 Sum_probs=108.5
Q ss_pred EEEECCCCCEEEEEEC--------------------C----CeEEEEECC-CceEEEecC--cc--------CCeEEEEE
Q 010754 279 TLDWNGEGTLLATGSY--------------------D----GQARIWSTN-GDLKCTLSK--HK--------GPIFSLKW 323 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~~--------------------d----g~i~iwd~~-~~~~~~~~~--~~--------~~v~~l~~ 323 (502)
.+++.|+..+++.++. | +.|..+|.. ++.+..+.. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4567777777777763 2 578999975 555555432 21 2222 222
Q ss_pred e-cCCC---EEEEEecCCeEEEEEcCCCceEEEEeeccC--CeE------------------------------------
Q 010754 324 N-KKGD---YLLTGSCDKTAIVWDVKTEEWKQQFEFHSG--PTL------------------------------------ 361 (502)
Q Consensus 324 ~-~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~------------------------------------ 361 (502)
. .+|+ .++.++.+|.++++|..+|+.+..+..... ...
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 2 4664 778899999999999999998877654320 000
Q ss_pred -------EEEecCC-CEEEEEe---------------------------------CCCeEEEEEcCCCcceEEEecCCCc
Q 010754 362 -------DVDWRNN-VSFATSS---------------------------------TDNMIYVCKIGENRPIKTFAGHQGE 400 (502)
Q Consensus 362 -------~v~~~~~-~~~~~~~---------------------------------~d~~i~i~d~~~~~~~~~~~~h~~~ 400 (502)
.+++.+. +.+++.. .+|.|..||+.+++.+.++.... +
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~ 487 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-P 487 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-C
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-C
Confidence 1122222 2222221 35789999999999887766332 2
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCc-EEEEEEccCCC
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE-IYTIRWSPTGS 453 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~-i~~v~~sp~g~ 453 (502)
+..-.....+.+++.|+.||.|+.||.++++.+.+++..... ..-+.|..+|.
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 221112224668888999999999999999999888743321 12256667775
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.021 Score=54.21 Aligned_cols=224 Identities=10% Similarity=0.080 Sum_probs=121.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC---CCEEEE
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLAT 291 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~s 291 (502)
-.....++|.|+|+++++ ..+|.|++++ .++. . .+..+. ...........|+++|+ +..|++
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~----------~~~~~~-v~~~g~~g~~gia~~pdf~~~g~lyv 92 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--K----------LVASFD-VANVGEAGLLGLALHPEFPKKSWVYL 92 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--E----------EEEECC-CCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--e----------Eeeccc-eeecCCCceeeEEeCCCCCcCCEEEE
Confidence 345679999999985555 5569998886 2221 0 111111 11112345889999997 455554
Q ss_pred EEC----C----CeEEEEECCCc------eEEE---ec-CccCCeEEEEEecCCCEEEEEec-------------CCeEE
Q 010754 292 GSY----D----GQARIWSTNGD------LKCT---LS-KHKGPIFSLKWNKKGDYLLTGSC-------------DKTAI 340 (502)
Q Consensus 292 ~~~----d----g~i~iwd~~~~------~~~~---~~-~~~~~v~~l~~~~~~~~l~s~~~-------------d~~i~ 340 (502)
+.. + +.|..|+..+. .... +. ........|.|.|+|.+.++.+. .|.|.
T Consensus 93 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ 172 (354)
T 3a9g_A 93 YASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKIL 172 (354)
T ss_dssp EEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEE
T ss_pred EEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEE
Confidence 443 2 56777776543 1111 21 11123467999999986666432 24566
Q ss_pred EEEcCCCc-------eEEEEeeccCCeEEEEecC-CCEEEEEeCCC----eEEEEEcCC----------------CcceE
Q 010754 341 VWDVKTEE-------WKQQFEFHSGPTLDVDWRN-NVSFATSSTDN----MIYVCKIGE----------------NRPIK 392 (502)
Q Consensus 341 ~wd~~~~~-------~~~~~~~~~~~v~~v~~~~-~~~~~~~~~d~----~i~i~d~~~----------------~~~~~ 392 (502)
-++....- ....+.........++|.+ .+.+.++.... .|.+..... ..++.
T Consensus 173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 252 (354)
T 3a9g_A 173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVI 252 (354)
T ss_dssp EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEe
Confidence 66553210 0111111122345678877 45555543322 233332111 02333
Q ss_pred EEecCCCcEEEEEEc-------CCCCEEEEEeCCCcEEEEECCCC-eeE--EEec-cCCCcEEEEEEccCCC
Q 010754 393 TFAGHQGEVNCVKWD-------PTGSLLASCSDDVTAKIWNMKQD-KYV--HDLR-EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 393 ~~~~h~~~i~~l~~s-------p~g~~las~s~dg~i~iwd~~~~-~~~--~~~~-~h~~~i~~v~~sp~g~ 453 (502)
.+.........++|. .+|.++++.-..+.|...++... +.. ..+. .....+..+++.|||.
T Consensus 253 ~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~ 324 (354)
T 3a9g_A 253 DTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG 324 (354)
T ss_dssp ECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC
T ss_pred ecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc
Confidence 441123457888884 56777777666778888887753 222 2332 2245789999999997
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00084 Score=65.80 Aligned_cols=152 Identities=9% Similarity=0.116 Sum_probs=98.5
Q ss_pred CCeEEEEECC-CCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC-C----eEEEEEcCCCc
Q 010754 275 KDVTTLDWNG-EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD-K----TAIVWDVKTEE 348 (502)
Q Consensus 275 ~~v~~l~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d-~----~i~~wd~~~~~ 348 (502)
.....|+|+| ++..|+++...+.|+.+|..+..+..+.........|+|++++++|+++... + .+.+++ ..+.
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 3567899998 4556666665588999999886666655555668899999999977766542 1 344444 3333
Q ss_pred eE--EEEeeccCCeEEEEecC-CCE-EEEEeCCCeEEEEEcCCCcceEEEec-CCCcEEEEEEcCCCCEE-EEEeCCCcE
Q 010754 349 WK--QQFEFHSGPTLDVDWRN-NVS-FATSSTDNMIYVCKIGENRPIKTFAG-HQGEVNCVKWDPTGSLL-ASCSDDVTA 422 (502)
Q Consensus 349 ~~--~~~~~~~~~v~~v~~~~-~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~-h~~~i~~l~~sp~g~~l-as~s~dg~i 422 (502)
.. ..+.. ......+++.+ ++. +++-...+.|+.++...+.....+.. .......|+|+|+|++| ++-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 22 22222 23345666766 444 44455678899999876654222221 22457799999999955 444567889
Q ss_pred EEEECC
Q 010754 423 KIWNMK 428 (502)
Q Consensus 423 ~iwd~~ 428 (502)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0022 Score=59.26 Aligned_cols=153 Identities=8% Similarity=0.127 Sum_probs=103.9
Q ss_pred CeEEEEECCCCCEEEEEE-CCCeEEEEECCCceEEEe-cCc-------cCCeEEEEE---ecCCCEEEEEec--------
Q 010754 276 DVTTLDWNGEGTLLATGS-YDGQARIWSTNGDLKCTL-SKH-------KGPIFSLKW---NKKGDYLLTGSC-------- 335 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~-~~~-------~~~v~~l~~---~~~~~~l~s~~~-------- 335 (502)
.--+++|++....+..++ ..|.|..|+..+.....+ ... ...+..|.| .|++.++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 355788988656666665 789999999874433222 211 113589999 688766665442
Q ss_pred -----CCeEEEEEcC---CCceEEEEeec-------------cCCeEEEEecCC-CEEEEEeCC-CeEEEEEcCCCcceE
Q 010754 336 -----DKTAIVWDVK---TEEWKQQFEFH-------------SGPTLDVDWRNN-VSFATSSTD-NMIYVCKIGENRPIK 392 (502)
Q Consensus 336 -----d~~i~~wd~~---~~~~~~~~~~~-------------~~~v~~v~~~~~-~~~~~~~~d-~~i~i~d~~~~~~~~ 392 (502)
++.|..||+. +++.+...... .....++...++ +.+++++.. +.|..++.... .+.
T Consensus 94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~ 172 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVS 172 (334)
T ss_dssp CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEE
T ss_pred cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEe
Confidence 6789999999 78777665531 123677877554 557778877 88777776544 333
Q ss_pred EEecC------CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 393 TFAGH------QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 393 ~~~~h------~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
.+... ....+.|+++|+|++|+.....|.|..+|+.+
T Consensus 173 ~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 173 TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 32211 12367999999999988887799999999874
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.011 Score=55.27 Aligned_cols=182 Identities=9% Similarity=0.133 Sum_probs=116.0
Q ss_pred CCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecC----CC---EEEEEec---CCeEEEEEc--CCCceEEE
Q 010754 285 EGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKK----GD---YLLTGSC---DKTAIVWDV--KTEEWKQQ 352 (502)
Q Consensus 285 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~----~~---~l~s~~~---d~~i~~wd~--~~~~~~~~ 352 (502)
...+++.....+-+.+||++++.+..+.. +.+..+..-|. |+ ++++... +++|.+|++ .++. +..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred CccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 34566767778899999999999888754 56677776652 22 2333333 578999977 3333 443
Q ss_pred Eee------cc-CCeEEEEe--cC-CC--EEEEEeCCCeEEEEEcC-------CCcceEEEecCCCcEEEEEEcCCCCEE
Q 010754 353 FEF------HS-GPTLDVDW--RN-NV--SFATSSTDNMIYVCKIG-------ENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (502)
Q Consensus 353 ~~~------~~-~~v~~v~~--~~-~~--~~~~~~~d~~i~i~d~~-------~~~~~~~~~~h~~~i~~l~~sp~g~~l 413 (502)
+.. .. ..+..+|. ++ .+ .+++...+|.+..|++. +.+.+++|.. .+.+-.+..++....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 311 11 34555665 44 23 36677788999999983 2355677764 4678899999998999
Q ss_pred EEEeCCCcEEEEECC-----CCeeEEEec-cC-CCcEEEEEE--ccCCCCCCCCCccEEEEe-ecCceEEEEe
Q 010754 414 ASCSDDVTAKIWNMK-----QDKYVHDLR-EH-SKEIYTIRW--SPTGSGTNNPNQQLILAR-LIPYFLYWIC 476 (502)
Q Consensus 414 as~s~dg~i~iwd~~-----~~~~~~~~~-~h-~~~i~~v~~--sp~g~~~~~~~~~l~las-~~~~~~iw~~ 476 (502)
+.+-++.-|..++.. +++.+..+. ++ ...+..|+. .++|. .+|+.++ .+....+|..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~------gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK------GYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC------EEEEEEEGGGTEEEEEES
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC------EEEEEEcCCCCEEEEEEC
Confidence 999998666666644 455665553 22 236888888 45443 2344444 2455666654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00027 Score=73.85 Aligned_cols=219 Identities=9% Similarity=-0.093 Sum_probs=126.0
Q ss_pred CceEEEEEcCCCCeEEEE-eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC-EEEEEE
Q 010754 216 SEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT-LLATGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sg-s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~-~l~s~~ 293 (502)
..+..++|++.+..|+.+ ...+.|+.+++........ ..............|++.+.+. ++++-.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-------------~~~~i~~~~~~P~glavD~~~g~LY~tD~ 472 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-------------YDTVISRDIQAPDGLAVDWIHSNIYWTDS 472 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC-------------CCCBCCSCC--CCCEECCCSSSBCEECCT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc-------------eEEEEeCCCCCcceEEEEeeCCcEEEEec
Confidence 456788999866555544 4567888888765110000 0000000012345677775444 444445
Q ss_pred CCCeEEEEECCCceEEEecC-ccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEEecC--C
Q 010754 294 YDGQARIWSTNGDLKCTLSK-HKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN--N 368 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~--~ 368 (502)
..+.|.++++++.....+.. .......|+++|.+.+|+.+.. .+.|..+++........+.........|++.+ +
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~ 552 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 552 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTC
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCC
Confidence 56889999998776555533 2244578899997665555443 26788887754322221111223355677764 3
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEec---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEE
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~---h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~ 445 (502)
..+++-...+.|..+++..... ..+.. .......|++..+ .++++....+.|..++..+++.+..+.......+.
T Consensus 553 ~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~ 630 (699)
T 1n7d_A 553 RLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPED 630 (699)
T ss_dssp CEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCC
T ss_pred EEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcE
Confidence 4456666778899999865333 33321 1233456666554 45555566789999998889888777643334455
Q ss_pred EEEc
Q 010754 446 IRWS 449 (502)
Q Consensus 446 v~~s 449 (502)
|++.
T Consensus 631 i~v~ 634 (699)
T 1n7d_A 631 MVLF 634 (699)
T ss_dssp CCBC
T ss_pred EEEe
Confidence 5544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.72 E-value=0.016 Score=56.02 Aligned_cols=165 Identities=9% Similarity=0.032 Sum_probs=105.1
Q ss_pred EEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCC----ceEEEEeeccCCeEE
Q 010754 288 LLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTE----EWKQQFEFHSGPTLD 362 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~----~~~~~~~~~~~~v~~ 362 (502)
+|+.+. ...|+..++.+.....+......+..|+|++.+..|+.+. ..+.|..+++... .....+.........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 163 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 163 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCccc
Confidence 455444 4788988988765555555566789999998766665554 5678999988652 222223222333444
Q ss_pred E--EecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEecc
Q 010754 363 V--DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 363 v--~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~--dg~i~iwd~~~~~~~~~~~~ 438 (502)
+ +|..+..+++-...+.|.+.++........+.........|+++|.+.+|+.... .+.|...++........+..
T Consensus 164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~ 243 (400)
T 3p5b_L 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243 (400)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS
T ss_pred EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC
Confidence 4 4455666777777889999998766554444444456889999997666655542 37788888765433333333
Q ss_pred CCCcEEEEEEccCCC
Q 010754 439 HSKEIYTIRWSPTGS 453 (502)
Q Consensus 439 h~~~i~~v~~sp~g~ 453 (502)
.-.....|+++|++.
T Consensus 244 ~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 244 NIQWPNGITLDLLSG 258 (400)
T ss_dssp SCSCEEEEEEETTTT
T ss_pred CCCceEEEEEEeCCC
Confidence 334578899998776
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0088 Score=58.52 Aligned_cols=152 Identities=9% Similarity=0.014 Sum_probs=93.3
Q ss_pred CCeEEEEECCC--CCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC-----eEEEEEcCCC
Q 010754 275 KDVTTLDWNGE--GTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTE 347 (502)
Q Consensus 275 ~~v~~l~~s~~--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-----~i~~wd~~~~ 347 (502)
.....|+|+|+ +..|+.+...+.|+.++..+..+..+.........++|+++|+ |+.+...+ .+..++...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 34679999984 4455555544899999987666666655556689999999999 55544322 2333433222
Q ss_pred ce-EEEEeeccCCeEEEEecC-CCEEE-EEeCCCeEEEEEcCCCcceEEEec--CCCcEEEEEEcCCCCEEE-EEeCCCc
Q 010754 348 EW-KQQFEFHSGPTLDVDWRN-NVSFA-TSSTDNMIYVCKIGENRPIKTFAG--HQGEVNCVKWDPTGSLLA-SCSDDVT 421 (502)
Q Consensus 348 ~~-~~~~~~~~~~v~~v~~~~-~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~--h~~~i~~l~~sp~g~~la-s~s~dg~ 421 (502)
.. ...+. .......+++.+ ++.+. +-..++.|+.++..++.....+.. ....-..|+|+|+|++|. +-...+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11121 223345566665 45444 444677899999886665233321 122345799999999554 4455788
Q ss_pred EEEEECC
Q 010754 422 AKIWNMK 428 (502)
Q Consensus 422 i~iwd~~ 428 (502)
|+.++..
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9998865
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.014 Score=59.58 Aligned_cols=202 Identities=10% Similarity=-0.007 Sum_probs=115.7
Q ss_pred CCeEEEEeC-CCcEEEEec-CCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE----EEEEECCCeEEE
Q 010754 227 GSLLASGSG-DSTARIWTI-ADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL----LATGSYDGQARI 300 (502)
Q Consensus 227 ~~~l~sgs~-dg~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~----l~s~~~dg~i~i 300 (502)
+..|+.++. ++.|.-+|. .+++.+-........ ..............++++|.+.. |++++.|+.|..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~------~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~A 135 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNP------AARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAA 135 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCG------GGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCc------cccccccccccccceEEEecCCcceeEEEEEcCCCEEEE
Confidence 445666666 788888888 777643211110000 00000000000122344343334 888889999999
Q ss_pred EECC-CceEEEecCcc----CCeEE-EEEecCCCEEEEEe------cCCeEEEEEcCCCceEEEEeeccCCe--------
Q 010754 301 WSTN-GDLKCTLSKHK----GPIFS-LKWNKKGDYLLTGS------CDKTAIVWDVKTEEWKQQFEFHSGPT-------- 360 (502)
Q Consensus 301 wd~~-~~~~~~~~~~~----~~v~~-l~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~v-------- 360 (502)
+|.. ++.+....... ..+.+ ..+. + ..+++++ .++.|+.+|..+|+.+..+.......
T Consensus 136 lDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~ 213 (599)
T 1w6s_A 136 LNAETGETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF 213 (599)
T ss_dssp EETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred EECCCCCEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence 9975 55555443211 01111 1111 3 3555555 38999999999999988776432110
Q ss_pred ------------------------------EEEEec-CCCEEEEEeCC----------------CeEEEEEcCCCcceEE
Q 010754 361 ------------------------------LDVDWR-NNVSFATSSTD----------------NMIYVCKIGENRPIKT 393 (502)
Q Consensus 361 ------------------------------~~v~~~-~~~~~~~~~~d----------------~~i~i~d~~~~~~~~~ 393 (502)
..+.+. ..+.++.+..+ +.|..+|..+++.+..
T Consensus 214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 011221 24455665554 3899999999998887
Q ss_pred EecCCC----------cEEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCeeEEEec
Q 010754 394 FAGHQG----------EVNCVKWD-PTG---SLLASCSDDVTAKIWNMKQDKYVHDLR 437 (502)
Q Consensus 394 ~~~h~~----------~i~~l~~s-p~g---~~las~s~dg~i~iwd~~~~~~~~~~~ 437 (502)
+..... ++. +... .+| ..++.++.+|.+++.|..+++.+....
T Consensus 294 ~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 294 YQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 764321 121 2222 567 578889999999999999999887654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0032 Score=64.20 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=56.3
Q ss_pred CCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcE-EEEEEcCCCC-EE
Q 010754 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV-NCVKWDPTGS-LL 413 (502)
Q Consensus 336 d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i-~~l~~sp~g~-~l 413 (502)
+|.|..||+.+++.+.++...........-..++.+++++.|+.++.||.++++.+.++....+.+ .-+.|..+|+ |+
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 578999999999988777643321111111346677779999999999999999999887543322 1256667776 44
Q ss_pred EEEeC
Q 010754 414 ASCSD 418 (502)
Q Consensus 414 as~s~ 418 (502)
++.+.
T Consensus 545 ~~~~G 549 (582)
T 1flg_A 545 GVTVG 549 (582)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 44443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.60 E-value=0.022 Score=53.12 Aligned_cols=159 Identities=9% Similarity=-0.001 Sum_probs=96.6
Q ss_pred CCeEEEEECCCce--EEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceE-EEEeeccCCe--EEEEecCC
Q 010754 295 DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWK-QQFEFHSGPT--LDVDWRNN 368 (502)
Q Consensus 295 dg~i~iwd~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~-~~~~~~~~~v--~~v~~~~~ 368 (502)
...|+.+++++.. ..........+..+.|++.+..|+ +-...+.|..+++..+... ..+....... ..+.|..+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 4678888887642 222222233567899998655555 4455778999998766321 1222221223 44555556
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEEeccCCCcEEEE
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD--DVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~--dg~i~iwd~~~~~~~~~~~~h~~~i~~v 446 (502)
..+++-...+.|.++++........+.........|+++|.+.+|+.+.. .+.|...++........+...-.....|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 66777777889999998765433333344566889999997666655552 5778888876332222222222346889
Q ss_pred EEccCCC
Q 010754 447 RWSPTGS 453 (502)
Q Consensus 447 ~~sp~g~ 453 (502)
+|+|++.
T Consensus 172 avd~~~~ 178 (318)
T 3sov_A 172 TLDYEEQ 178 (318)
T ss_dssp EEETTTT
T ss_pred EEeccCC
Confidence 9999765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.07 Score=56.21 Aligned_cols=158 Identities=11% Similarity=-0.071 Sum_probs=100.4
Q ss_pred CCeEEEEECCCCCEEEEE-ECCCeEEEEECCCc-----eEEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCC
Q 010754 275 KDVTTLDWNGEGTLLATG-SYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTE 347 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~-~~dg~i~iwd~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~ 347 (502)
..+..|+|++....|+.+ ...+.|+.+++++. ....+.........|++.+.+..|+ +-...+.|.+.++...
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~ 503 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence 457899999865555544 45678999988753 2233333445567899998775555 4455789999998755
Q ss_pred ceEEEEeeccCCeEEEEecCC-CEEEEEe-CC-CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEE
Q 010754 348 EWKQQFEFHSGPTLDVDWRNN-VSFATSS-TD-NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAK 423 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~-~~~~~~~-~d-~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~ 423 (502)
.....+.........|+..+. +.|+... .. +.|...++........+...-...+.|++++.+..|+.+. ..+.|.
T Consensus 504 ~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~ 583 (791)
T 3m0c_C 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 583 (791)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEE
Confidence 443333334445777887653 4444433 33 7888888865544333433346789999998777666664 456788
Q ss_pred EEECCCCee
Q 010754 424 IWNMKQDKY 432 (502)
Q Consensus 424 iwd~~~~~~ 432 (502)
..++.....
T Consensus 584 ~~d~dG~~~ 592 (791)
T 3m0c_C 584 SIDVNGGNR 592 (791)
T ss_dssp EEETTSCSC
T ss_pred EEecCCCce
Confidence 888865433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.083 Score=54.23 Aligned_cols=201 Identities=8% Similarity=-0.043 Sum_probs=126.1
Q ss_pred CceEEEEEcCCCC-eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE-E
Q 010754 216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-S 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~-~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~ 293 (502)
..+..++|++.+. ++++-..++.|..+++...... .+ .. ........|++.+.+..|+.+ .
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~-----------~v--~~----~g~~~P~GlAvD~~~~~LY~tD~ 99 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE-----------HV--VE----FGLDYPEGMAVDWLGKNLYWADT 99 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------EE--EC----SSCSCCCEEEEETTTTEEEEEET
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE-----------EE--Ee----CCCCCcceEEEEeCCCEEEEEEC
Confidence 4578999999654 4555556788888887653211 00 00 011246678887765555554 4
Q ss_pred CCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEEecC-CC
Q 010754 294 YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-NV 369 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~~ 369 (502)
..+.|.+.++++.....+. ..-.....|++.|....|+.+.. .+.|...++....... +.........+++.+ ++
T Consensus 100 ~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l~~~~~~P~GlalD~~~~ 178 (628)
T 4a0p_A 100 GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-LVPNVGRANGLTIDYAKR 178 (628)
T ss_dssp TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-EECSCSSEEEEEEETTTT
T ss_pred CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-EECCCCCcceEEEccccC
Confidence 5688999999876544433 33345689999996666665553 5678888876544333 323344567777765 34
Q ss_pred E-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 370 S-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 370 ~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
. +++-...+.|..+++..... ..+........+|++.. +.++++-...+.|...|..+++....+
T Consensus 179 ~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 179 RLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 4 55556678899999876544 44444445567888875 455555556788999997776544443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.017 Score=59.32 Aligned_cols=205 Identities=9% Similarity=-0.032 Sum_probs=118.1
Q ss_pred CCceEEEEEcCCCCeEE-EEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE-
Q 010754 215 TSEVCACAWSPAGSLLA-SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG- 292 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~-sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~- 292 (502)
...+..++|++.+..|+ +=...+.|..+++...... ... .. ........|++.+.+..|+.+
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~---------~~v---~~----~~~~~P~GlAvD~~~~~ly~~d 102 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---------QNV---VV----SGLLSPDGLACDWLGEKLYWTD 102 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C---------EEE---EC----SSCSCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce---------EEE---Ee----CCCCCcCeEEEEecCCEEEEEe
Confidence 35577999999655555 4444677888887653210 000 00 112357899999866655555
Q ss_pred ECCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEEecC-C
Q 010754 293 SYDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 368 (502)
Q Consensus 293 ~~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~ 368 (502)
...+.|.+.++++.....+. ..-.....|++.|.+.+|+.+.. .+.|...++..................+++.+ +
T Consensus 103 ~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~ 182 (619)
T 3s94_A 103 SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE 182 (619)
T ss_dssp TTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccC
Confidence 45689999999987654443 33445688999997666665553 35777777654333332322334566777754 3
Q ss_pred CE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 369 VS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 369 ~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
+. +++-...+.|..+++..........+......+|++..+ .++.+-...+.|...|..+++....+
T Consensus 183 ~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 183 QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 44 445456678888888754433222222223456777655 44445455778999998777544333
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.018 Score=53.21 Aligned_cols=140 Identities=9% Similarity=0.008 Sum_probs=92.0
Q ss_pred CccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCceEEEEeec-------cCCeEEEEe---cCCCEEEEEeC-----
Q 010754 313 KHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEEWKQQFEFH-------SGPTLDVDW---RNNVSFATSST----- 376 (502)
Q Consensus 313 ~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~v~~---~~~~~~~~~~~----- 376 (502)
....--.+++|++....|+.++ ..++|..||...+......... ...+..+.| .+.++++++..
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 3334456789998666666666 6899999998766544331111 013578899 45666554333
Q ss_pred ---------CCeEEEEEcC---CCcceEEEec--C-----------CCcEEEEEEcCCCCEEEEEeCC-CcEEEEECCCC
Q 010754 377 ---------DNMIYVCKIG---ENRPIKTFAG--H-----------QGEVNCVKWDPTGSLLASCSDD-VTAKIWNMKQD 430 (502)
Q Consensus 377 ---------d~~i~i~d~~---~~~~~~~~~~--h-----------~~~i~~l~~sp~g~~las~s~d-g~i~iwd~~~~ 430 (502)
+..+..||+. +++.+....- . ......++..++|+..++++.- +.|...+...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG- 168 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG- 168 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-
Confidence 6789999999 7877655541 1 1248899999999999999888 8776666543
Q ss_pred eeEEEec------cCCCcEEEEEEccCCC
Q 010754 431 KYVHDLR------EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 431 ~~~~~~~------~h~~~i~~v~~sp~g~ 453 (502)
+.+..+. ......+.|+++|+|.
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~ 197 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSN 197 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTT
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCC
Confidence 2222221 1122367999999997
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.033 Score=54.87 Aligned_cols=151 Identities=9% Similarity=0.042 Sum_probs=94.0
Q ss_pred CeEEEEECCC-CCEEEEE-ECCCeEEEEECCCceEEEecCcc----CCeEEEEE-------ecCCCEEEEEecCC-----
Q 010754 276 DVTTLDWNGE-GTLLATG-SYDGQARIWSTNGDLKCTLSKHK----GPIFSLKW-------NKKGDYLLTGSCDK----- 337 (502)
Q Consensus 276 ~v~~l~~s~~-g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~~v~~l~~-------~~~~~~l~s~~~d~----- 337 (502)
....|+|+|. ...|+++ ...+.|++.|..+..+..+.... .....|+| ++++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4444444 44578999998886666554321 24789999 99999777766554
Q ss_pred --eEEEEEcCC-CceE-----EEEeeccCCeEEEEecC--CCEEEEEeCCCeEEEEEcC-------CCcc----------
Q 010754 338 --TAIVWDVKT-EEWK-----QQFEFHSGPTLDVDWRN--NVSFATSSTDNMIYVCKIG-------ENRP---------- 390 (502)
Q Consensus 338 --~i~~wd~~~-~~~~-----~~~~~~~~~v~~v~~~~--~~~~~~~~~d~~i~i~d~~-------~~~~---------- 390 (502)
.|.+++... +... ..+... .....++..+ +..+++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366666333 2321 222221 2234555555 3446666778889999987 4442
Q ss_pred -eEE-Ee-cCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 010754 391 -IKT-FA-GHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNM 427 (502)
Q Consensus 391 -~~~-~~-~h~~~i~~l~~sp~g~~las~-s~dg~i~iwd~ 427 (502)
... +. +.......|+|+|+|++|..+ +..+.|+.++.
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 122 22 223456799999999964444 55678888654
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.34 Score=49.54 Aligned_cols=157 Identities=11% Similarity=-0.076 Sum_probs=96.9
Q ss_pred CCeEEEEECCCCCEEEEEEC-CCeEEEEECCCce--EEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceE
Q 010754 275 KDVTTLDWNGEGTLLATGSY-DGQARIWSTNGDL--KCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWK 350 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~-dg~i~iwd~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~ 350 (502)
..+..|+|++.+..|+.+.. .+.|..+++++.. ...+...-.....|++.+.+..|+ +-...+.|.+.++......
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 45789999997777766654 5789999987652 223333335678999998665555 4455789999998755433
Q ss_pred EEEeeccCCeEEEEecC-CCEEEEEeC--CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 010754 351 QQFEFHSGPTLDVDWRN-NVSFATSST--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWN 426 (502)
Q Consensus 351 ~~~~~~~~~v~~v~~~~-~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd 426 (502)
..+.........|++.+ ++.+..+.. .+.|...++............-...+.|++++++..|..+. ..+.|...|
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 33323334456677754 344443332 45677777654433333333445688999999766665554 467788888
Q ss_pred CCCCe
Q 010754 427 MKQDK 431 (502)
Q Consensus 427 ~~~~~ 431 (502)
+....
T Consensus 200 ~dG~~ 204 (619)
T 3s94_A 200 LDGTN 204 (619)
T ss_dssp SSCCE
T ss_pred CCCCc
Confidence 86543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.12 Score=49.34 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=88.8
Q ss_pred cCCCEEEEEecCCeEEEEEcCCCceEEEEeec----cCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCc-----------
Q 010754 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----SGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR----------- 389 (502)
Q Consensus 325 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~----------- 389 (502)
.+|..++.+ .++.||.-++......+.+... -..+..+..++++.+++-..+..|.|..+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 344444443 3456666666544334444432 224667888888888888888999999887331
Q ss_pred -ceEEEec------CCCcEEEEEEcCC---CCEEEEEeCCCcEEEEECCCC--eeEEEec---------cCCCcEEEEEE
Q 010754 390 -PIKTFAG------HQGEVNCVKWDPT---GSLLASCSDDVTAKIWNMKQD--KYVHDLR---------EHSKEIYTIRW 448 (502)
Q Consensus 390 -~~~~~~~------h~~~i~~l~~sp~---g~~las~s~dg~i~iwd~~~~--~~~~~~~---------~h~~~i~~v~~ 448 (502)
..+.+.- ...+|..+.|+|- +..|++-..|+.||+||+... ++. .++ .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 1223332 2467999999995 568999999999999999752 122 222 22356889999
Q ss_pred ccCCCCCCCCCccEEEEe--ecCceE
Q 010754 449 SPTGSGTNNPNQQLILAR--LIPYFL 472 (502)
Q Consensus 449 sp~g~~~~~~~~~l~las--~~~~~~ 472 (502)
.++|- .|.+++ ..|++.
T Consensus 188 g~~~l-------TLYvl~~t~~GDIY 206 (452)
T 3pbp_A 188 SKDGL-------TLYCLNTTEGGDIF 206 (452)
T ss_dssp CTTSS-------CEEEEECTTSCEEE
T ss_pred cCCCc-------EEEEEecCCCCCEE
Confidence 99654 666655 334443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.29 Score=46.14 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=81.4
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEE--Ee---cCccCCeEEEEEecC---CCEEEEEecC------CeEEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC--TL---SKHKGPIFSLKWNKK---GDYLLTGSCD------KTAIV 341 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~--~~---~~~~~~v~~l~~~~~---~~~l~s~~~d------~~i~~ 341 (502)
....|+|.|+|++++ +...|.|++++ .+.... .+ .........|+|+|+ +..|+++... +.|..
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 478999999998554 56679999998 543221 11 112346789999998 5566555442 67888
Q ss_pred EEcCCCce------EEEEee---ccCCeEEEEecCCCEEEEEeCC--------------CeEEEEEcCCC----------
Q 010754 342 WDVKTEEW------KQQFEF---HSGPTLDVDWRNNVSFATSSTD--------------NMIYVCKIGEN---------- 388 (502)
Q Consensus 342 wd~~~~~~------~~~~~~---~~~~v~~v~~~~~~~~~~~~~d--------------~~i~i~d~~~~---------- 388 (502)
|+...+.. +..+.. .......+.|.+++.+..+..+ +.|.-++....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 88764421 111221 0112357888777766655322 46666665431
Q ss_pred ---cceEEEecCCCcEEEEEEcC-CCCEEEEEeCCC
Q 010754 389 ---RPIKTFAGHQGEVNCVKWDP-TGSLLASCSDDV 420 (502)
Q Consensus 389 ---~~~~~~~~h~~~i~~l~~sp-~g~~las~s~dg 420 (502)
.....-.++ .....++|+| +|.++++-...+
T Consensus 190 ~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~ 224 (352)
T 2ism_A 190 RGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPS 224 (352)
T ss_dssp TTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC-
T ss_pred CCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCC
Confidence 111111233 3366799999 677666544433
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.33 Score=45.65 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=98.7
Q ss_pred eEEEEECCCCCEEEEEE------------CCCeEEEEECCC--ceEE--EecC-----ccCCeEEEEEec--CCC-EEEE
Q 010754 277 VTTLDWNGEGTLLATGS------------YDGQARIWSTNG--DLKC--TLSK-----HKGPIFSLKWNK--KGD-YLLT 332 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~------------~dg~i~iwd~~~--~~~~--~~~~-----~~~~v~~l~~~~--~~~-~l~s 332 (502)
.-.+...|+|..+++++ .+|.|.++|.+. .... .+.+ .......|.+.+ ++. +|++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 44566778876655542 689999999762 1222 2222 234567777766 353 4554
Q ss_pred Eec---CCeEEEEEcCCCc-e---EEEEeec-cCCeEEEEecCCCEEEEEeC------------------CCeEEEEEcC
Q 010754 333 GSC---DKTAIVWDVKTEE-W---KQQFEFH-SGPTLDVDWRNNVSFATSST------------------DNMIYVCKIG 386 (502)
Q Consensus 333 ~~~---d~~i~~wd~~~~~-~---~~~~~~~-~~~v~~v~~~~~~~~~~~~~------------------d~~i~i~d~~ 386 (502)
+.. +.+|.+|++.... . +..+.+. -....++...+++.|.++.. .|.|+-++.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 432 4678888775432 2 2223221 22467888877777666543 244555554
Q ss_pred CCcceEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CeeE--EEeccCCCcEEEEEEcc-CCC
Q 010754 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQ-DKYV--HDLREHSKEIYTIRWSP-TGS 453 (502)
Q Consensus 387 ~~~~~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~-~~~~--~~~~~h~~~i~~v~~sp-~g~ 453 (502)
++ +..+...-...+.|+|+||++.|..+. ..+.|..|++.. ++.. ..+ ...+..-.++..+ +|.
T Consensus 211 -~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 211 -ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD 279 (355)
T ss_dssp -TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred -Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence 33 333333335678999999998876665 478899999863 3321 222 1233455566666 355
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.39 Score=44.95 Aligned_cols=234 Identities=10% Similarity=0.050 Sum_probs=125.1
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC--
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE-- 285 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~-- 285 (502)
+.++-..-..-+.++|.|+|.++++-...|.|++++..++.. ..+..+.............|+++|+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-----------~~v~~~~~v~~~g~~GllGia~~Pdf~ 92 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-----------TELGEVPGVSPSGEGGLLGIALSPDYA 92 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-----------EEEEECTTCCCBTTBSEEEEEECTTHH
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-----------eeecccCceeecCCCCceeeEeccccc
Confidence 344444456678999999999877776589999887554331 0111111112223456899999995
Q ss_pred -CCEEEEE-E--CCCeEEEEECCC---------ceEE---Eec-CccCCeEEEEEecCCCEEEEEec-------------
Q 010754 286 -GTLLATG-S--YDGQARIWSTNG---------DLKC---TLS-KHKGPIFSLKWNKKGDYLLTGSC------------- 335 (502)
Q Consensus 286 -g~~l~s~-~--~dg~i~iwd~~~---------~~~~---~~~-~~~~~v~~l~~~~~~~~l~s~~~------------- 335 (502)
+..|++. + .++.|.-|.... .... .+. .....-..|.|.|+|.+.++.+.
T Consensus 93 ~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~ 172 (347)
T 3das_A 93 SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSL 172 (347)
T ss_dssp HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCS
T ss_pred cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCC
Confidence 3444443 2 344555555443 1111 121 11223467999999987776542
Q ss_pred CCeEEEEEcCCCc-------eEEEEeeccCCeEEEEecCCCEEEEEeC--CCeEEEEEcCCC------------------
Q 010754 336 DKTAIVWDVKTEE-------WKQQFEFHSGPTLDVDWRNNVSFATSST--DNMIYVCKIGEN------------------ 388 (502)
Q Consensus 336 d~~i~~wd~~~~~-------~~~~~~~~~~~v~~v~~~~~~~~~~~~~--d~~i~i~d~~~~------------------ 388 (502)
.|.|.-.+....- ....+...-.....++|.+.+.+.++-. ++.-.|.-+..+
T Consensus 173 ~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~ 252 (347)
T 3das_A 173 GGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH 252 (347)
T ss_dssp TTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred CCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence 3455555543220 0111221112345677877666555533 221222222211
Q ss_pred cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----EEEeccCCCcEEEEEEccCCC
Q 010754 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY----VHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 389 ~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~----~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.++..+..+......++|. +|.++...-..+.|....+..... ..-+.+....+..|+..|||.
T Consensus 253 ~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~ 320 (347)
T 3das_A 253 DPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDK 320 (347)
T ss_dssp CCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTE
T ss_pred CCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCc
Confidence 1344444333466788887 466666555556666556554432 223334456799999999997
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.73 Score=47.17 Aligned_cols=210 Identities=9% Similarity=-0.062 Sum_probs=122.6
Q ss_pred CceEEEEEcCCCCeEEEE-eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE-EEE
Q 010754 216 SEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGS 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sg-s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-s~~ 293 (502)
..+.+++|.+....|+.+ ...+.|+.+++...... ..+... .........+..|++...++.|+ +-+
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~----------~v~~~~-~~~~~~~~~p~glAvD~~~~nLY~td~ 408 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF----------TVVVSS-VPSQNLEIQPYDLSIDIYSRYIYWTCE 408 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------EEEC---------CCCEEEEEEETTTTEEEEEET
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCce----------EEEEcc-cccccccCCcceEEeeccCCeEEEEcC
Confidence 457789998865544444 44667877776543210 000000 00000123578999998766555 445
Q ss_pred CCCeEEEEECCCceEEEec-CccCCeEEEEEecC-CCEEEEEecCC--eEEEEEcCCCceEEEEeeccCCeEEEEecC-C
Q 010754 294 YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKK-GDYLLTGSCDK--TAIVWDVKTEEWKQQFEFHSGPTLDVDWRN-N 368 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~-~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~-~ 368 (502)
..+.|.+.++++.....+. ..-....+|++.|. |..+++-.... .|...++............-.....++..+ .
T Consensus 409 ~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~ 488 (628)
T 4a0p_A 409 ATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRL 488 (628)
T ss_dssp TTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTT
T ss_pred CCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCC
Confidence 6689999999987655443 33456799999994 44444433232 566666653333222332333456777754 3
Q ss_pred CEE-EEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 369 VSF-ATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 369 ~~~-~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
+.+ ++-+..+.|..+++.... .+++. .......+|++.. +.++.+=...+.|...|..+++....+..
T Consensus 489 ~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~~ 558 (628)
T 4a0p_A 489 GKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQA 558 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEec
Confidence 444 444556889999985543 34443 3345577888765 55555555667888888887776555543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0049 Score=64.32 Aligned_cols=159 Identities=10% Similarity=0.056 Sum_probs=91.9
Q ss_pred CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCC----CceEEEEeec--cCCeEEEEecC
Q 010754 295 DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT----EEWKQQFEFH--SGPTLDVDWRN 367 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~----~~~~~~~~~~--~~~v~~v~~~~ 367 (502)
.+.|+..++.+.....+......+..|+|++.+..|+.+. ..+.|+.+++.. ......+... ...-..+.|..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 4678888877655544444445667899998777666654 457899999875 2211111111 11123444555
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCeeEEEeccCCCcEEE
Q 010754 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-D-VTAKIWNMKQDKYVHDLREHSKEIYT 445 (502)
Q Consensus 368 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~-d-g~i~iwd~~~~~~~~~~~~h~~~i~~ 445 (502)
+..+++-...+.|.++++........+.........|+++|.+.+|+.+.. . +.|.++++........+...-.....
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG 544 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG 544 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence 566666667788999998755433333322345678899997655544432 2 67877776533221111122234567
Q ss_pred EEEccCCC
Q 010754 446 IRWSPTGS 453 (502)
Q Consensus 446 v~~sp~g~ 453 (502)
|+|+|++.
T Consensus 545 lavd~~~~ 552 (699)
T 1n7d_A 545 ITLDLLSG 552 (699)
T ss_dssp EEECTTTC
T ss_pred EEEeccCC
Confidence 89998765
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.038 Score=52.67 Aligned_cols=124 Identities=11% Similarity=0.119 Sum_probs=79.1
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCC--CCceeEEEeeecCccccCCCCeEEEEECCC---CCEEE
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQN--GPLNVLVLKHVKGRTNEKSKDVTTLDWNGE---GTLLA 290 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~---g~~l~ 290 (502)
+.|..+..||+|.+||..+. ..|.|-.++.+........ ..+..... .+..........|..+.|+|- +..|+
T Consensus 66 ~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty-~l~~~~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 66 DDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHY-SIDEEEVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp CTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEE-EGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred CceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEE-EcCCcccCCCCceeEEEeccccCCCCeEE
Confidence 35788999999999999865 6899999985432211000 11221111 111111123578999999994 56899
Q ss_pred EEECCCeEEEEECCC---ceEEEec---------CccCCeEEEEEecCCCEEEEEe--cCCeEEEE
Q 010754 291 TGSYDGQARIWSTNG---DLKCTLS---------KHKGPIFSLKWNKKGDYLLTGS--CDKTAIVW 342 (502)
Q Consensus 291 s~~~dg~i~iwd~~~---~~~~~~~---------~~~~~v~~l~~~~~~~~l~s~~--~d~~i~~w 342 (502)
+-..|+.|++||+.. ... .+. .....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 999999999999763 111 222 1225688999998776666644 67777654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.24 Score=42.70 Aligned_cols=137 Identities=7% Similarity=-0.021 Sum_probs=80.9
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCC-------ceEEEe--cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNG-------DLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-------~~~~~~--~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~ 346 (502)
.++.++|+|+|.+.++ .+|.+.-.+... ..-..+ .+... -.++.|.|+|.+.++ .||.|+-++-.+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5789999999987766 667766655432 111111 11122 478899999987777 669998887533
Q ss_pred CceE------EEE-eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCc------ceEEEe-cCCCcEEEEEEcCCCCE
Q 010754 347 EEWK------QQF-EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR------PIKTFA-GHQGEVNCVKWDPTGSL 412 (502)
Q Consensus 347 ~~~~------~~~-~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~-~h~~~i~~l~~sp~g~~ 412 (502)
.... ..+ ...-..+..|.+.|++.|.+.. |+.++-....++. ....+. ..-.....+.|.|+|.+
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 2110 011 1111346788888988888888 8886543332221 111222 22234555778999887
Q ss_pred EEEEeCCC
Q 010754 413 LASCSDDV 420 (502)
Q Consensus 413 las~s~dg 420 (502)
.+.. +|
T Consensus 196 ~~v~--~g 201 (236)
T 1tl2_A 196 FGVQ--GG 201 (236)
T ss_dssp EEEE--TT
T ss_pred EEEe--CC
Confidence 7666 66
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.71 Score=43.36 Aligned_cols=230 Identities=11% Similarity=0.147 Sum_probs=125.9
Q ss_pred EEeccCCCceEEEEEcCCCCeEEEE------------eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCc-cccCCC
Q 010754 209 TILEGHTSEVCACAWSPAGSLLASG------------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR-TNEKSK 275 (502)
Q Consensus 209 ~~l~~H~~~V~~~~~~p~~~~l~sg------------s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 275 (502)
+.+.+-....-.++..|+|..++++ ..+|.|.++|..+.... ...+. .... .....-
T Consensus 43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~---------~~~l~-~~g~~~~~~~f 112 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA---------VSELE-IIGNTLDISSF 112 (355)
T ss_dssp EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC---------EEECE-EECSSCCGGGC
T ss_pred EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc---------eEEEE-ccCCCCCcCce
Confidence 3344422334456677776554444 16889999998743210 01111 1110 111223
Q ss_pred CeEEEEECC--CCC-EEEEEEC---CCeEEEEECC--CceEE---EecCc-cCCeEEEEEecCCCEEEEEec--------
Q 010754 276 DVTTLDWNG--EGT-LLATGSY---DGQARIWSTN--GDLKC---TLSKH-KGPIFSLKWNKKGDYLLTGSC-------- 335 (502)
Q Consensus 276 ~v~~l~~s~--~g~-~l~s~~~---dg~i~iwd~~--~~~~~---~~~~~-~~~v~~l~~~~~~~~l~s~~~-------- 335 (502)
....+.+.+ +|. +|+++.. +..|.+|+++ +.... .+.+. -.....+.+.++|.+.++...
T Consensus 113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK 192 (355)
T ss_dssp CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence 466676654 454 4544432 4677887754 33222 22221 235788999999987776541
Q ss_pred ---------CCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-E-EEEEeCCCeEEEEEcCCC-c--ceEEEecCCCcE
Q 010754 336 ---------DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-S-FATSSTDNMIYVCKIGEN-R--PIKTFAGHQGEV 401 (502)
Q Consensus 336 ---------d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~-~~~~~~d~~i~i~d~~~~-~--~~~~~~~h~~~i 401 (502)
.|.|..+|. ++. ..+...-.....++|++++ . +++-+..+.|+.|++... . ....+. ..+..
T Consensus 193 ~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~P 268 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLV 268 (355)
T ss_dssp HHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEE
T ss_pred cchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCC
Confidence 245555554 332 2333334567899999876 3 445556889999998643 2 123342 34667
Q ss_pred EEEEEcC-CCCEEEEEeCC-CcEEEEECC--CCeeEEEecc---CCCcEEEEEEccCCC
Q 010754 402 NCVKWDP-TGSLLASCSDD-VTAKIWNMK--QDKYVHDLRE---HSKEIYTIRWSPTGS 453 (502)
Q Consensus 402 ~~l~~sp-~g~~las~s~d-g~i~iwd~~--~~~~~~~~~~---h~~~i~~v~~sp~g~ 453 (502)
-.+++++ +|++.+++..+ +.|..|+-. .+..+..++. -...|..+ |..+|.
T Consensus 269 DGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~ 326 (355)
T 3sre_A 269 DNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGT 326 (355)
T ss_dssp EEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSS
T ss_pred ceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCC
Confidence 8899999 59988877644 345555543 3555555542 22334444 666776
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.93 Score=43.39 Aligned_cols=212 Identities=15% Similarity=0.202 Sum_probs=137.2
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 010754 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 299 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~ 299 (502)
+.-.+|..+.+|.=. ..++.|+|+++..... ...- ..+|.-=.|-.+. .|+..+ +..|+
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klk-------------s~~~-----~e~VvfWkWis~~-~l~lVT-~taVy 128 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMK-------------AHTM-----TDDVTFWKWISLN-TVALVT-DNAVY 128 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEE-------------EEEC-----SSCCCEEEEEETT-EEEEEC-SSEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhc-------------ceec-----CCCceEEEecCCC-eEEEEc-CCeeE
Confidence 345677777777665 5799999999865321 1111 2346666665443 444433 57899
Q ss_pred EEECCC--ceEEEecCc----cCCeEEEEEecCCCEEEEEec-------CCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 300 IWSTNG--DLKCTLSKH----KGPIFSLKWNKKGDYLLTGSC-------DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 300 iwd~~~--~~~~~~~~~----~~~v~~l~~~~~~~~l~s~~~-------d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
-|++.+ .....+..| ...|..-..+++.++++..+- .|.+.+|..+.+ .-+.+.+|...-..+...
T Consensus 129 HWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~ 207 (494)
T 1bpo_A 129 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKME 207 (494)
T ss_dssp EEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECT
T ss_pred EecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecC
Confidence 999864 455555554 346777788889998875432 468889997654 456677776655544443
Q ss_pred CC----CEEEEEeC---CCeEEEEEcCCC---c-c-----eEEEec---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 367 NN----VSFATSST---DNMIYVCKIGEN---R-P-----IKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 367 ~~----~~~~~~~~---d~~i~i~d~~~~---~-~-----~~~~~~---h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
.+ ..|+.+.. .++++|.++... . + +..+.. -.+-..++..++.-..+..-+.-|.|++||+
T Consensus 208 g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDl 287 (494)
T 1bpo_A 208 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 287 (494)
T ss_dssp TCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEec
Confidence 22 22443333 378999998643 1 1 111111 1344668889998889999999999999999
Q ss_pred CCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.++.++..-+-...+|...+-+....
T Consensus 288 eTgt~i~~nrIs~~~iF~t~~~~~~~ 313 (494)
T 1bpo_A 288 ETGTCIYMNRISGETIFVTAPHEATA 313 (494)
T ss_dssp TTCCEEEEEECCSSCEEEEEEETTTT
T ss_pred ccceeeeeecccCCceEEecccCCCC
Confidence 99999987776666776666555443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.43 Score=43.86 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=89.0
Q ss_pred EEECCCCCEEEEEECC--------------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe----cCCeEEE
Q 010754 280 LDWNGEGTLLATGSYD--------------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS----CDKTAIV 341 (502)
Q Consensus 280 l~~s~~g~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~----~d~~i~~ 341 (502)
--++++|..|+-+... ..|+..++++.....+... . +..|++++++|+-.. ....|..
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~ 133 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYR 133 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEE
Confidence 3457788887777543 4677778877655444322 2 236788888888765 2345666
Q ss_pred EEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC--
Q 010754 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-- 419 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-- 419 (502)
.++.... ...+..+.. ..+.|..+..+.+......|++.++..+.....+. +... ..++|++.+|+-....
T Consensus 134 ~~~dGs~-~~~lt~~~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~ 206 (302)
T 3s25_A 134 IRIDGEE-KKKIKNHYL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRD 206 (302)
T ss_dssp EETTSCC-CEEEESSCC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGT
T ss_pred EECCCCC-eEEEeCCCc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCC
Confidence 6665433 333433322 34456555555554456788888887765443333 2222 3456999988876543
Q ss_pred CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 420 VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 420 g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
..|..-++.... ...+. +..+ ..|+|+|.
T Consensus 207 ~~I~~~~ldG~~-~~~Lt--~~~~--~~~~~~g~ 235 (302)
T 3s25_A 207 NAIVHVNINNPN-PVVLT--EANI--EHYNVYGS 235 (302)
T ss_dssp TEEEEECSSSCC-CEECS--CSCE--EEEEEETT
T ss_pred cEEEEEECCCCC-eEEEe--CCCc--ceEEECCC
Confidence 245555555433 22332 1223 23666665
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.22 Score=47.05 Aligned_cols=139 Identities=8% Similarity=0.057 Sum_probs=80.5
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEe-------cCccCCeEEEEEecC---CCEEEEEec--------CC
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-------SKHKGPIFSLKWNKK---GDYLLTGSC--------DK 337 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~v~~l~~~~~---~~~l~s~~~--------d~ 337 (502)
....|+|.|+|+.|+++...|.|++++.++.....+ .........|+|+|+ +..|+.+.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 478999999999444566789999998665432111 112345689999995 455554432 23
Q ss_pred eEEEEEcCCC--c--eEEE-Eeecc------CCeEEEEecCCCEEEEEeCC--------------CeEEEEEcCCCc---
Q 010754 338 TAIVWDVKTE--E--WKQQ-FEFHS------GPTLDVDWRNNVSFATSSTD--------------NMIYVCKIGENR--- 389 (502)
Q Consensus 338 ~i~~wd~~~~--~--~~~~-~~~~~------~~v~~v~~~~~~~~~~~~~d--------------~~i~i~d~~~~~--- 389 (502)
.|..|++... . .... +.... .....+.|.+++.|..+..+ +.|.-++.....
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666766433 1 1111 11111 12356888888877666543 467667765321
Q ss_pred ---------ceEEE-ecCCCcEEEEEEcC-CCCEEEE
Q 010754 390 ---------PIKTF-AGHQGEVNCVKWDP-TGSLLAS 415 (502)
Q Consensus 390 ---------~~~~~-~~h~~~i~~l~~sp-~g~~las 415 (502)
....+ .+| .....++|+| +|.++++
T Consensus 179 npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred CCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 11222 233 3477899999 6665554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=1.1 Score=42.22 Aligned_cols=141 Identities=11% Similarity=0.103 Sum_probs=80.6
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCc-eEEEe---cCccCCeEEEEEecC---CCEEEEEec----C----CeEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGD-LKCTL---SKHKGPIFSLKWNKK---GDYLLTGSC----D----KTAI 340 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~-~~~~~---~~~~~~v~~l~~~~~---~~~l~s~~~----d----~~i~ 340 (502)
....|+|.|+|++ +++..+|.|++++.++. .+..+ .........|+|+|+ +..|+++.. + +.|.
T Consensus 30 ~P~~ia~~pdG~l-~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 30 VPWSIAPLGGGRY-LVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp CEEEEEEEETTEE-EEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CCeEEEEcCCCeE-EEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 4789999999984 45566799999986554 11111 112346789999997 555555443 3 5788
Q ss_pred EEEcCCC--ce-----E-EEEee-ccCCeEEEEecCCCEEEEEeCC--------------CeEEEEEcCCC--------c
Q 010754 341 VWDVKTE--EW-----K-QQFEF-HSGPTLDVDWRNNVSFATSSTD--------------NMIYVCKIGEN--------R 389 (502)
Q Consensus 341 ~wd~~~~--~~-----~-~~~~~-~~~~v~~v~~~~~~~~~~~~~d--------------~~i~i~d~~~~--------~ 389 (502)
.|+.... .. + ..+.. .......+.|.+++.|+.+..+ +.|.-++.... .
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~ 188 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN 188 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence 8877544 11 1 11221 1112456788777766655332 45665655432 1
Q ss_pred ceEEEecCCCcEEEEEEcC-CCCEEEEEeC
Q 010754 390 PIKTFAGHQGEVNCVKWDP-TGSLLASCSD 418 (502)
Q Consensus 390 ~~~~~~~h~~~i~~l~~sp-~g~~las~s~ 418 (502)
....-.++. ....++|+| +|.++++-..
T Consensus 189 ~~i~a~G~r-np~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 189 SPIWSYGHR-NPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp CCEEEECCS-CCCEEEECTTTCCEEEEECC
T ss_pred CcEEEEccC-CcceEEEeCCCCCEEEEecC
Confidence 111122343 356899999 6776665433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.36 Score=44.08 Aligned_cols=145 Identities=11% Similarity=0.176 Sum_probs=78.6
Q ss_pred CCCEEEEEECC-----CeEEEEECCCce---EEEecCc---cCCeEEEEEecCCCEEEEEecC-----CeEEEEEcCCCc
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDL---KCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEE 348 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~---~~~~~~~---~~~v~~l~~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 348 (502)
++.+++.|+.+ ..+.+||..... ...+... ......+.+ ++..++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777755 468889976544 3333221 111122222 56666676654 368899998887
Q ss_pred eEEEEeeccCC-eEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcceEE--EecCCCcEEEEEEcCCCCEEEEEeCC-
Q 010754 349 WKQQFEFHSGP-TLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDD- 419 (502)
Q Consensus 349 ~~~~~~~~~~~-v~~v~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~--~~~h~~~i~~l~~sp~g~~las~s~d- 419 (502)
+...-...... -..+....+..++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 217 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDG 217 (301)
T ss_dssp EEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred EEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCC
Confidence 65543221111 112222345556666543 4588899877643221 1111111222333 56777777654
Q ss_pred ----CcEEEEECCCCeeE
Q 010754 420 ----VTAKIWNMKQDKYV 433 (502)
Q Consensus 420 ----g~i~iwd~~~~~~~ 433 (502)
..+.+||+.+.+..
T Consensus 218 ~~~~~~v~~yd~~~~~W~ 235 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWT 235 (301)
T ss_dssp SSBCCCEEEEETTTTEEE
T ss_pred CcccceEEEEeCCCCcEE
Confidence 46899999887654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.33 Score=53.49 Aligned_cols=208 Identities=14% Similarity=0.200 Sum_probs=125.3
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 010754 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIW 301 (502)
Q Consensus 222 ~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iw 301 (502)
-.+|..+.+|.=. ..++.|+|+.+........ ...+|.-=.|-.... |+..+ +..|.-|
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~------------------~~e~VvfWkWis~~~-l~lVT-~~aVyHW 130 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT------------------MTDDVTFWKWISLNT-VALVT-DNAVYHW 130 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhcccc------------------cCCCceEEEecCCCe-eEEEc-CCeEEEe
Confidence 4566666666654 5789999998765432111 123566666765443 33333 4689999
Q ss_pred ECCC--ceEEEecCc----cCCeEEEEEecCCCEEEEEe-------cCCeEEEEEcCCCceEEEEeeccCCeEEEEec--
Q 010754 302 STNG--DLKCTLSKH----KGPIFSLKWNKKGDYLLTGS-------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-- 366 (502)
Q Consensus 302 d~~~--~~~~~~~~~----~~~v~~l~~~~~~~~l~s~~-------~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~-- 366 (502)
++.+ .+...+..| ...|..-..+++.++++..+ ..|.+.+|.+..+ ..+.+.+|.+....+...
T Consensus 131 ~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~ 209 (1630)
T 1xi4_A 131 SMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGN 209 (1630)
T ss_pred ccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCC
Confidence 9864 333333333 45677788888888877543 3578889987644 334455555443333221
Q ss_pred --CCCEEEEEe---CCCeEEEEEcCCC---cc------eEEEecC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 367 --NNVSFATSS---TDNMIYVCKIGEN---RP------IKTFAGH---QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 367 --~~~~~~~~~---~d~~i~i~d~~~~---~~------~~~~~~h---~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
+...|+.+. ..++++|.++... .+ +..+... .+-..++..++.-..+..-+.-|.|.++|+.|
T Consensus 210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t 289 (1630)
T 1xi4_A 210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET 289 (1630)
T ss_pred CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence 112222221 2378999998543 11 1111111 23345678888878888889999999999999
Q ss_pred CeeEEEeccCCCcEEEEEEccC
Q 010754 430 DKYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 430 ~~~~~~~~~h~~~i~~v~~sp~ 451 (502)
+.++..-+-...+|...+-+..
T Consensus 290 ~~~i~~~ris~~~iF~~~~~~~ 311 (1630)
T 1xi4_A 290 GTCIYMNRISGETIFVTAPHEA 311 (1630)
T ss_pred chhhhhccccCCceEEeccCCC
Confidence 9998766555556655554433
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.38 Score=43.99 Aligned_cols=146 Identities=19% Similarity=0.255 Sum_probs=78.3
Q ss_pred CCCEEEEEECCC-----eEEEEECCCceEEEecCccCCe--EEEEEecCCCEEEEEecC-------CeEEEEEcCCCceE
Q 010754 285 EGTLLATGSYDG-----QARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSCD-------KTAIVWDVKTEEWK 350 (502)
Q Consensus 285 ~g~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~ 350 (502)
++.+++.|+.++ .+.+||........+.....+. .+++. -++..++.|+.+ ..+.+||+.+.++.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 567777787653 5778887765544443222111 12222 245666666542 45889999888765
Q ss_pred EEEeeccC-CeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcceEE--EecCCCcEEEEEEcCCCCEEEEEeCCC--
Q 010754 351 QQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDDV-- 420 (502)
Q Consensus 351 ~~~~~~~~-~v~~v~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~--~~~h~~~i~~l~~sp~g~~las~s~dg-- 420 (502)
..-..... .-..+....+..++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.++
T Consensus 187 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~ 264 (302)
T 2xn4_A 187 YIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSC 264 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSS
T ss_pred ECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCc
Confidence 43211111 1112233355566676654 3688999887643211 1111111122222 567777777553
Q ss_pred ---cEEEEECCCCeeE
Q 010754 421 ---TAKIWNMKQDKYV 433 (502)
Q Consensus 421 ---~i~iwd~~~~~~~ 433 (502)
.+.+||..+.+..
T Consensus 265 ~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 265 NLASVEYYNPTTDKWT 280 (302)
T ss_dssp BCCCEEEEETTTTEEE
T ss_pred ccccEEEEcCCCCeEE
Confidence 4888998876643
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.45 Score=43.57 Aligned_cols=145 Identities=10% Similarity=0.113 Sum_probs=78.2
Q ss_pred CCCEEEEEECC----CeEEEEECCCceEEEecCcc---CCeEEEEEecCCCEEEEEecC------CeEEEEEcCCCceEE
Q 010754 285 EGTLLATGSYD----GQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWKQ 351 (502)
Q Consensus 285 ~g~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~ 351 (502)
++.+++.|+.+ ..+.+||........+.... .....+.+ ++..++.|+.+ ..+.+||..+.++..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 56677777755 67888998765544333211 11122222 56677777765 468999998887654
Q ss_pred EEeeccC-CeEEEEecCCCEEEEEeC---------CCeEEEEEcCCCcceEE--EecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 352 QFEFHSG-PTLDVDWRNNVSFATSST---------DNMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 352 ~~~~~~~-~v~~v~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~--~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
.-..... .-..+....+..++.|+. -..+.+||+.+.+-... +......-..+.+ ++++++.|+.+
T Consensus 133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQN 210 (306)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEE
T ss_pred CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCC
Confidence 3211111 111222234455555543 34588899887642211 1111111122222 56677777653
Q ss_pred -----CcEEEEECCCCeeE
Q 010754 420 -----VTAKIWNMKQDKYV 433 (502)
Q Consensus 420 -----g~i~iwd~~~~~~~ 433 (502)
..+.+||..+.+..
T Consensus 211 ~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp TTEEBCCEEEEETTTTEEE
T ss_pred CCCCCceEEEeeCCCCcEE
Confidence 35889998877643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.68 Score=42.20 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCCEEEEEECC-----CeEEEEECCCceEEEecCc---cCCeEEEEEecCCCEEEEEecC-----CeEEEEEcCCCceEE
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQ 351 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~ 351 (502)
++.+++.|+.+ ..+.+||........+... ...-.++.+ ++..++.|+.+ ..+.+||+.+.++..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56777777654 3688889776544333221 111122222 56677777654 468999998887654
Q ss_pred EEeeccC-CeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcceEE--EecCCCcEEEEEEcCCCCEEEEEeCC----
Q 010754 352 QFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDD---- 419 (502)
Q Consensus 352 ~~~~~~~-~v~~v~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~--~~~h~~~i~~l~~sp~g~~las~s~d---- 419 (502)
.-..... .-..+....+..++.|+.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~ 267 (301)
T 2vpj_A 190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSL 267 (301)
T ss_dssp ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcc
Confidence 3211111 1112223345556666653 4688999887653221 1111111222333 56777777655
Q ss_pred -CcEEEEECCCCee
Q 010754 420 -VTAKIWNMKQDKY 432 (502)
Q Consensus 420 -g~i~iwd~~~~~~ 432 (502)
..|.+||..+.+.
T Consensus 268 ~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 268 LSSIECYDPIIDSW 281 (301)
T ss_dssp EEEEEEEETTTTEE
T ss_pred cccEEEEcCCCCeE
Confidence 3578888877654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.60 E-value=1.6 Score=42.70 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee--------ccCCeEEEEecC----CCEEEEEeC-------
Q 010754 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--------HSGPTLDVDWRN----NVSFATSST------- 376 (502)
Q Consensus 316 ~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--------~~~~v~~v~~~~----~~~~~~~~~------- 376 (502)
...+.|+|.|+|+++++-...+.|++++..++........ .......|+|+| ++.|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3457999999998766654445798888655554322211 134567899987 555544432
Q ss_pred ------CCeEEEEEcCCC-------cceE-EEec-CCCcEEEEEEcCCCCEEEEEeC
Q 010754 377 ------DNMIYVCKIGEN-------RPIK-TFAG-HQGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 377 ------d~~i~i~d~~~~-------~~~~-~~~~-h~~~i~~l~~sp~g~~las~s~ 418 (502)
...|.-|+.... +.+. .+.. .......|+|.|+|.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235655655432 1111 1221 1234789999999998777554
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.41 Score=41.26 Aligned_cols=132 Identities=9% Similarity=0.001 Sum_probs=76.8
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEEcCCCce------EEEEe--eccCCeEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 010754 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW------KQQFE--FHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387 (502)
Q Consensus 316 ~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~------~~~~~--~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~ 387 (502)
..+..++|+|+|.+.++ .+|.+.-.+..+... -..+- +-. .-..+.|.+++.|.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCc
Confidence 36779999998885555 778777777654221 11110 011 1356777888877777 669998777543
Q ss_pred Ccce------EEE-ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee------EEEe-ccCCCcEEEEEEccCCC
Q 010754 388 NRPI------KTF-AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY------VHDL-REHSKEIYTIRWSPTGS 453 (502)
Q Consensus 388 ~~~~------~~~-~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~------~~~~-~~h~~~i~~v~~sp~g~ 453 (502)
...- ..+ .+-=..+..|.+.|+|.+.+.. |+.++-+...++.. ...+ ......-.-+.|.|+|.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT 194 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence 2211 111 1112468999999999988777 77754443322110 0111 12223345577999987
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.079 Score=49.47 Aligned_cols=188 Identities=10% Similarity=-0.028 Sum_probs=97.0
Q ss_pred CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE---ECCCCCEEEEE-ECCCeEEEEEC
Q 010754 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD---WNGEGTLLATG-SYDGQARIWST 303 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~---~s~~g~~l~s~-~~dg~i~iwd~ 303 (502)
.+++.++.||.|.-.|..+++..-.+.... ..++.... ...++..++.. +.||.|..++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~----------------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~ 74 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN----------------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNA 74 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGG----------------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEET
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCc----------------cCCcEEecCCccccCCcEEEEEECCCCEEEEEEC
Confidence 467888889999988888876433222110 00011100 00122333333 57888988887
Q ss_pred CCceEE-EecC----ccCCeEE---EEE-e----cCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCe-----EEEEe
Q 010754 304 NGDLKC-TLSK----HKGPIFS---LKW-N----KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----LDVDW 365 (502)
Q Consensus 304 ~~~~~~-~~~~----~~~~v~~---l~~-~----~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----~~v~~ 365 (502)
...... .+.. ..+++.. ... . ..+..+++|+.+|.+...|+.+|+.+..+......- ...+.
T Consensus 75 ~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~ 154 (339)
T 2be1_A 75 HQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCS 154 (339)
T ss_dssp TTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------
T ss_pred CCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccc
Confidence 644322 1111 1122221 000 0 135678999999999999999999999886432110 11111
Q ss_pred --------cCCCEEEEEeCCCeEEEEEcCCCcceEEE-----ecCCCc--E-EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 366 --------RNNVSFATSSTDNMIYVCKIGENRPIKTF-----AGHQGE--V-NCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 366 --------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-----~~h~~~--i-~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
..+..++.+..+..+.+.+ ++++ +..+ ...... + .+-..+.++.+ +.++.||.|.-.|..+
T Consensus 155 ~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~ 231 (339)
T 2be1_A 155 PEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDF 231 (339)
T ss_dssp ----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTT
T ss_pred cccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCC
Confidence 1234566666666666655 3343 2111 111000 0 00001124566 4478889999999888
Q ss_pred CeeEE
Q 010754 430 DKYVH 434 (502)
Q Consensus 430 ~~~~~ 434 (502)
|+.+.
T Consensus 232 G~~~W 236 (339)
T 2be1_A 232 RIARW 236 (339)
T ss_dssp CCEEE
T ss_pred CcEEE
Confidence 88765
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=1.5 Score=40.28 Aligned_cols=148 Identities=9% Similarity=0.117 Sum_probs=78.1
Q ss_pred CCCCCEEEEEEC-----C------CeEEEEECCCceEEEecCccCCeE--EEEEecCCCEEEEEecC--------CeEEE
Q 010754 283 NGEGTLLATGSY-----D------GQARIWSTNGDLKCTLSKHKGPIF--SLKWNKKGDYLLTGSCD--------KTAIV 341 (502)
Q Consensus 283 s~~g~~l~s~~~-----d------g~i~iwd~~~~~~~~~~~~~~~v~--~l~~~~~~~~l~s~~~d--------~~i~~ 341 (502)
..++.+++.|+. . ..+.+||........+.....+-. +++.. ++..++.|+.+ ..+.+
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEE
Confidence 357788888874 1 126778877655444432222111 12222 45666666642 46899
Q ss_pred EEcCCCceEEEEeeccC-CeEEEEecCCCEEEEEeC-C-----CeEEEEEcCCCcce--EEEecCCCcEEEEEEcCCCCE
Q 010754 342 WDVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSST-D-----NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSL 412 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~-d-----~~i~i~d~~~~~~~--~~~~~h~~~i~~l~~sp~g~~ 412 (502)
||..+.++...-..... .-.++....+..++.|+. + ..+.+||..+.+-. ..+......-.++.+ ++++
T Consensus 122 ~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 199 (315)
T 4asc_A 122 YDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRI 199 (315)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred ECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEE
Confidence 99988765442211111 111222344556666665 2 45888998776421 111111111222223 5677
Q ss_pred EEEEeCCC-----cEEEEECCCCeeE
Q 010754 413 LASCSDDV-----TAKIWNMKQDKYV 433 (502)
Q Consensus 413 las~s~dg-----~i~iwd~~~~~~~ 433 (502)
++.|+.++ .+.+||..+.+..
T Consensus 200 yv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 200 IVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EEEeccCCCCccceEEEEECCCCeEE
Confidence 77777654 4888998877644
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.18 E-value=1.2 Score=43.59 Aligned_cols=99 Identities=7% Similarity=0.131 Sum_probs=57.0
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECC-CceE--EEecC------ccCCeEEEEEecC---CCEEEEEec--------
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLK--CTLSK------HKGPIFSLKWNKK---GDYLLTGSC-------- 335 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~--~~~~~------~~~~v~~l~~~~~---~~~l~s~~~-------- 335 (502)
..+.|+|.|+|+++++-...+.|++++.. +... ..+.. .......|+|+|+ +..|+.+..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 47899999999977765444578888754 3222 12221 2356779999995 555555442
Q ss_pred -----CCeEEEEEcCCC--ce---EEEEe---e-ccCCeEEEEecCCCEEEEE
Q 010754 336 -----DKTAIVWDVKTE--EW---KQQFE---F-HSGPTLDVDWRNNVSFATS 374 (502)
Q Consensus 336 -----d~~i~~wd~~~~--~~---~~~~~---~-~~~~v~~v~~~~~~~~~~~ 374 (502)
...|.-|+.... .. ...+. . .......|.|.+++.|.++
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 235666665432 11 11111 1 1124678899877665544
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.07 E-value=5.2 Score=44.08 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=98.1
Q ss_pred CCceEEEEEcCC------CCeEEEEeC-CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 215 TSEVCACAWSPA------GSLLASGSG-DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 215 ~~~V~~~~~~p~------~~~l~sgs~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
.+.|.|+++.|. +.++|.|.. |++++|+++.+.+.. ....+.... ....|.-+.+ ....
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~-----------~~~~L~~~~--~p~si~l~~~-~~~~ 618 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL-----------HKEMLGGEI--IPRSILMTTF-ESSH 618 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE-----------EEEECCSSC--CEEEEEEEEE-TTEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE-----------EEEECCCCC--CCcEEEEEEe-CCCc
Confidence 467999999873 368999997 999999999854321 111111100 0112333333 2345
Q ss_pred EEEEEECCCeEEEEECC---CceE---EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 288 LLATGSYDGQARIWSTN---GDLK---CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~---~~~~---~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
+|..|-.||.+.-+.++ +... ..+.+ ..++.-..+...+..-+.+..++...+|--+ ++.... ......+.
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~ 695 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVN 695 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCC
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhc
Confidence 88899999988666543 2222 12222 3455555555445444444445555555533 332211 12222333
Q ss_pred E-EEecC---CCEEEEEeCCCeEEEEEcCCCc--ceEEEecCCCcEEEEEEcCCCCEEEEE
Q 010754 362 D-VDWRN---NVSFATSSTDNMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASC 416 (502)
Q Consensus 362 ~-v~~~~---~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~h~~~i~~l~~sp~g~~las~ 416 (502)
. ..|+. .+.++.. .++.++|..+.... .++++. -...+..++++|..+.++.+
T Consensus 696 ~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp EEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEE
T ss_pred eEeccCcccCCCcEEEE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEE
Confidence 3 33432 2335443 45669998876443 334444 34578888888877765443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.03 E-value=1.6 Score=39.72 Aligned_cols=146 Identities=11% Similarity=0.194 Sum_probs=78.4
Q ss_pred CCCEEEEEECC-----CeEEEEECCCceEEEecCccCC--eEEEEEecCCCEEEEEecCC-----eEEEEEcCCCceEEE
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCDK-----TAIVWDVKTEEWKQQ 352 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~ 352 (502)
++.+++.|+.+ ..+.+||........+.....+ -.+++. -++..++.|+.++ .+.+||+.+.++...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 139 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV 139 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence 56677777754 3588889876555444322111 112222 2566777777653 578899888776543
Q ss_pred EeeccC-CeEEEEecCCCEEEEEeC-------CCeEEEEEcCCCcceE--EEecCCCcEEEEEEcCCCCEEEEEeCC---
Q 010754 353 FEFHSG-PTLDVDWRNNVSFATSST-------DNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDD--- 419 (502)
Q Consensus 353 ~~~~~~-~v~~v~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~--~~~~h~~~i~~l~~sp~g~~las~s~d--- 419 (502)
-..... .-..+....+..++.|+. -..+.+||+.+.+-.. .+.........+.+ ++++++.|+.+
T Consensus 140 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~ 217 (302)
T 2xn4_A 140 APMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPL 217 (302)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSS
T ss_pred CCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCc
Confidence 211111 111222234555666543 2357889987764222 11111111222233 56777777654
Q ss_pred --CcEEEEECCCCeeE
Q 010754 420 --VTAKIWNMKQDKYV 433 (502)
Q Consensus 420 --g~i~iwd~~~~~~~ 433 (502)
..+.+||..+.+..
T Consensus 218 ~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 218 VRKSVEVYDPTTNAWR 233 (302)
T ss_dssp BCCCEEEEETTTTEEE
T ss_pred ccceEEEEeCCCCCEe
Confidence 36889999877654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.96 E-value=1.1 Score=40.78 Aligned_cols=187 Identities=12% Similarity=0.120 Sum_probs=97.4
Q ss_pred CCCeEEEEeCC----CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC------
Q 010754 226 AGSLLASGSGD----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD------ 295 (502)
Q Consensus 226 ~~~~l~sgs~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d------ 295 (502)
++.+++.|+.+ ..+.+||..+.+.. .+...... .....++.+ ++++++.|+.+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~-----------~~~~~p~~----r~~~~~~~~--~~~iyv~GG~~~~~~~~ 117 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWY-----------SKLGPPTP----RDSLAACAA--EGKIYTSGGSEVGNSAL 117 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEE-----------EEECCSSC----CBSCEEEEE--TTEEEEECCBBTTBSCC
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEE-----------ECCCCCcc----ccceeEEEE--CCEEEEECCCCCCCcEe
Confidence 56677777654 56778887765421 11111111 111122222 56777777765
Q ss_pred CeEEEEECCCceEEEecCccCC--eEEEEEecCCCEEEEEec---------CCeEEEEEcCCCceEEEEeeccC-CeEEE
Q 010754 296 GQARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSC---------DKTAIVWDVKTEEWKQQFEFHSG-PTLDV 363 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~-~v~~v 363 (502)
..+.+||........+.....+ -.+++. -++..++.|+. -..+.+||+.+.++...-..... .-..+
T Consensus 118 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 196 (306)
T 3ii7_A 118 YLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGL 196 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred eeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceE
Confidence 4688899876654444322111 112222 25566666654 34588999988876543211111 11122
Q ss_pred EecCCCEEEEEeCC-----CeEEEEEcCCCcc--eEEEecCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCe
Q 010754 364 DWRNNVSFATSSTD-----NMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPTGSLLASCSDD-----VTAKIWNMKQDK 431 (502)
Q Consensus 364 ~~~~~~~~~~~~~d-----~~i~i~d~~~~~~--~~~~~~h~~~i~~l~~sp~g~~las~s~d-----g~i~iwd~~~~~ 431 (502)
....+..++.|+.+ ..+.+||+.+.+- +..+........++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 197 ~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 197 VFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 22345556666543 4578899877642 2112111122233333 57778888754 468889988765
Q ss_pred e
Q 010754 432 Y 432 (502)
Q Consensus 432 ~ 432 (502)
.
T Consensus 275 W 275 (306)
T 3ii7_A 275 W 275 (306)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=2.9 Score=40.12 Aligned_cols=201 Identities=8% Similarity=0.079 Sum_probs=119.8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY- 294 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~- 294 (502)
..|.-=.|- +.+.|+..+. ..|.-|++.... .|. +.+..+..-....|.....+++.++++..+-
T Consensus 106 e~VvfWkWi-s~~~l~lVT~-taVyHWsi~~~s-------~P~-----kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~ 171 (494)
T 1bpo_A 106 DDVTFWKWI-SLNTVALVTD-NAVYHWSMEGES-------QPV-----KMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS 171 (494)
T ss_dssp SCCCEEEEE-ETTEEEEECS-SEEEEEESSSSC-------CCE-----EEEECCGGGTTCEEEEEEECTTSSEEEEEEEE
T ss_pred CCceEEEec-CCCeEEEEcC-CeeEEecccCCC-------Cch-----hheecchhcccceEEEEEECCCCCeEEEEeec
Confidence 345555565 3345555543 679999987522 111 1122222222466888888999998775542
Q ss_pred ------CCeEEEEECCCceEEEecCccCCeEEEEEecCC---CEEEEEec---CCeEEEEEcCCC---ce---EEEEee-
Q 010754 295 ------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTGSC---DKTAIVWDVKTE---EW---KQQFEF- 355 (502)
Q Consensus 295 ------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~~~---d~~i~~wd~~~~---~~---~~~~~~- 355 (502)
.|.+.+|+.+.+..+.+.+|......+...-+. +.|+.+.. .+.+.+.++... .. .+....
T Consensus 172 ~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~ 251 (494)
T 1bpo_A 172 AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (494)
T ss_dssp EETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred ccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeee
Confidence 378999999999999999998776665553221 23333333 268888888432 10 111110
Q ss_pred -----ccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 010754 356 -----HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ 429 (502)
Q Consensus 356 -----~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~ 429 (502)
..+-..++..++ .+.+..-+.-|.|++||+.++.++..-+-....|..-+.+....=++.....|.|.--.++.
T Consensus 252 fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 252 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp CCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred CCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 112233344433 45577778999999999999999877776666666555554444444445666555544444
Q ss_pred C
Q 010754 430 D 430 (502)
Q Consensus 430 ~ 430 (502)
.
T Consensus 332 ~ 332 (494)
T 1bpo_A 332 E 332 (494)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.85 E-value=5.9 Score=43.63 Aligned_cols=185 Identities=14% Similarity=0.100 Sum_probs=101.9
Q ss_pred CCeEEEEEC---CCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe---------cCCeEEEE
Q 010754 275 KDVTTLDWN---GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS---------CDKTAIVW 342 (502)
Q Consensus 275 ~~v~~l~~s---~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~---------~d~~i~~w 342 (502)
..++.+... ....+|+.+..+.+ .|+.+.+..+...... .|..+...|+++. ....|++.
T Consensus 426 ~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e~veev~~~-------gf~~~~~TL~~~~l~~~~ivQVt~~~Irli 497 (1158)
T 3ei3_A 426 KGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGEEVEETELM-------GFVDDQQTFFCGNVAHQQLIQITSASVRLV 497 (1158)
T ss_dssp CEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETTEEEEECCT-------TCCSSSCEEEEEEETTTEEEEEESSCEEEE
T ss_pred cEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCCcccccccc-------cccCCCCcEEEEEcCCCeEEEEecCEEEEE
Confidence 456666543 23467777766655 5666544333322110 1122222333322 13457777
Q ss_pred EcCCCceEEEEeecc-CCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcc--eEEEecCCCcEEEEEEcCC------CCEE
Q 010754 343 DVKTEEWKQQFEFHS-GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP--IKTFAGHQGEVNCVKWDPT------GSLL 413 (502)
Q Consensus 343 d~~~~~~~~~~~~~~-~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~~~i~~l~~sp~------g~~l 413 (502)
+...+..+..+.... ..|...+..+ ..++.+. ++.+.++.+..++. +.... -...|.|+++.|. +.++
T Consensus 498 ~~~~~~~~~~w~~p~~~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~-l~~evscl~i~~~~~~~~~s~~~ 574 (1158)
T 3ei3_A 498 SQEPKALVSEWKEPQAKNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTE-MEHEVACLDITPLGDSNGLSPLC 574 (1158)
T ss_dssp ESSSCCEEEEECCTTCCCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEE-CSSCEEEEECCCCSSSTTCCSEE
T ss_pred ECCCCeEEEEEECCCCCEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccC-CCCceEEEEeecCCCCcccccEE
Confidence 766555555555433 2455555444 4555554 67888888776532 22222 3567999999864 4699
Q ss_pred EEEeC-CCcEEEEECCCCeeEEEecc-CCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 414 ASCSD-DVTAKIWNMKQDKYVHDLRE-HSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 414 as~s~-dg~i~iwd~~~~~~~~~~~~-h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
|.|.. |++|+|+++.+.+.+....- ......++.+..-+. ..+|+.+-.+|.+..+.
T Consensus 575 aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~-----~~~L~igl~dG~l~~~~ 633 (1158)
T 3ei3_A 575 AIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFES-----SHYLLCALGDGALFYFG 633 (1158)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETT-----EEEEEEEETTSEEEEEE
T ss_pred EEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCC-----CcEEEEEeCCCeEEEEE
Confidence 99996 99999999988776654331 122344554443221 23566666666655443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.38 E-value=2.3 Score=38.50 Aligned_cols=178 Identities=15% Similarity=0.054 Sum_probs=93.5
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
.|..++....- .++. . ||.|..|-.+. .+- .-..-...|..++.... +.+.-. ||.|+.|-......+...
T Consensus 64 ~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg-~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~ 136 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTT-VPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP 136 (282)
T ss_dssp CCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTC-CCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC
T ss_pred CEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCC-CCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC
Confidence 46666654332 2333 4 89999997542 111 11112346777776543 344445 999999976432211111
Q ss_pred eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 010754 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 354 ~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~ 433 (502)
......|..++......++.. ||.|+.|-......+..-..-...|..|+...... ++. .||.|+.|-......+
T Consensus 137 ~~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gql 211 (282)
T 3qhy_B 137 AEAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQT 211 (282)
T ss_dssp GGGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTT
T ss_pred ccCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCC
Confidence 112345777766555555543 79999997665332221111134677777654433 333 4899999976543222
Q ss_pred EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 434 ~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
-.-......|..|+-...-. +.-+ ++.+..|-
T Consensus 212 g~p~~~~~~v~~i~~G~~h~---------~al~-~g~v~~wG 243 (282)
T 3qhy_B 212 TVPTEALSGVSAIASGEWYS---------LALK-NGKVIAWG 243 (282)
T ss_dssp CCCGGGGSSCCEEEECSSCE---------EEEE-TTEEEEES
T ss_pred CCCcccCCCceEEEcCCCEE---------EEEE-CCEEEEec
Confidence 11111123466666554433 3444 77777774
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.35 E-value=5.9 Score=41.44 Aligned_cols=210 Identities=11% Similarity=0.120 Sum_probs=121.3
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..|.++.-..+| .|..|+.+| +..||..+..... . .......|.++.. .+| .|..|+.+
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~--------------~---~~~~~~~i~~i~~-~~g-~lWigt~~ 121 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ--------------P---ETDFPTDVRTMAL-QGD-TLWLGALN 121 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC--------------C---SCCCCSCEEEEEE-ETT-EEEEEETT
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC--------------c---ccCCCceEEEEEe-cCC-cEEEEcCC
Confidence 468888777666 455666655 7789877653211 0 0001234777654 345 45566665
Q ss_pred CeEEEEECCCceEEEecC-----ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec------cCCeEEEE
Q 010754 296 GQARIWSTNGDLKCTLSK-----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH------SGPTLDVD 364 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~v~ 364 (502)
-|..++........+.. ....|.++....++...+ ++. +-+..+|..+++... +... ...|.++.
T Consensus 122 -Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~ 197 (758)
T 3ott_A 122 -GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLL 197 (758)
T ss_dssp -EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEE
T ss_pred -cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEE-ecCCCccccccceeEEEE
Confidence 57888876555444411 134688888877776554 444 458888877665432 2211 12377777
Q ss_pred ecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec------
Q 010754 365 WRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR------ 437 (502)
Q Consensus 365 ~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~------ 437 (502)
... ++.+..++. +.+..++..+++...........|.++....+|.+.+. +.+ -|.+++..+++......
T Consensus 198 ~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~ 274 (758)
T 3ott_A 198 EDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQ 274 (758)
T ss_dssp EETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTT
T ss_pred EECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcC
Confidence 654 454555553 56888888766432211112345888988888876654 444 48888877655432211
Q ss_pred -cCCCcEEEEEEccCCC
Q 010754 438 -EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 438 -~h~~~i~~v~~sp~g~ 453 (502)
-....|.++.-..+|.
T Consensus 275 ~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 275 SLTNNIIWNIFADQEHN 291 (758)
T ss_dssp SCSCSCEEEEEECTTCC
T ss_pred cCCcCeEEEEEEcCCCC
Confidence 1123478877766664
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.34 E-value=6 Score=41.42 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=109.6
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
.|.++.. .+| .|..|+.+ -+..++..+.+.. ..... ........|.++....+|.+.+ |+.+
T Consensus 104 ~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~-----------~~~~~--~~~l~~~~i~~i~~d~~g~lWi-gt~~- 165 (758)
T 3ott_A 104 DVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLT-----------SFDTR--RNGLPNNTIYSIIRTKDNQIYV-GTYN- 165 (758)
T ss_dssp CEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEE-----------EECHH--HHCCSCSCEEEEEECTTCCEEE-EETT-
T ss_pred eEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEE-----------EeccC--CCCcCCCeEEEEEEcCCCCEEE-EeCC-
Confidence 4666654 345 45556665 5777887654321 00000 0011234688888888887665 4544
Q ss_pred eEEEEECCCceEEEecCc------cCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE
Q 010754 297 QARIWSTNGDLKCTLSKH------KGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370 (502)
Q Consensus 297 ~i~iwd~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~ 370 (502)
-|..++........+... ...|.++...+++..|..|+. +-+..+|..+++...........|.++....++.
T Consensus 166 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 166 GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 477788765444333211 224888888877776666664 5688899877654332222334577777777777
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEec--------CCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFAG--------HQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~~--------h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
+..|+. +-+.+++..+... ..+.. ....|.++..+.+|.+-+ |+..| +.++.
T Consensus 245 lWigT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~ 304 (758)
T 3ott_A 245 LLAGTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSR 304 (758)
T ss_dssp EEEEET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEEC
T ss_pred EEEEeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccc
Confidence 777774 5678888766543 22321 124589999888887554 44556 54443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.25 E-value=3.2 Score=38.00 Aligned_cols=147 Identities=10% Similarity=0.133 Sum_probs=77.1
Q ss_pred CCCEEEEEECC-------CeEEEEECCCceEEEecCccCCe--EEEEEecCCCEEEEEec------CCeEEEEEcCCCce
Q 010754 285 EGTLLATGSYD-------GQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEW 349 (502)
Q Consensus 285 ~g~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~------d~~i~~wd~~~~~~ 349 (502)
++.+++.|+.+ ..+.+||........+.....+. .+++. .++..++.|+. -..+.+||..+.++
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 56777777754 35778887765554443222211 11222 35566666654 24589999988876
Q ss_pred EEEEeeccC-CeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcce--EEEecCCCcEEEEEEcCCCCEEEEEeCC--
Q 010754 350 KQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD-- 419 (502)
Q Consensus 350 ~~~~~~~~~-~v~~v~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~--~~~~~h~~~i~~l~~sp~g~~las~s~d-- 419 (502)
...-..... .-..+....+..++.|+.+ ..+.+||+.+.+-. ..+.........+.+ ++++++.|+.+
T Consensus 188 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 265 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMI 265 (318)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCB
T ss_pred EECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeecc
Confidence 543211111 1112233455666676543 34678888776421 112111111222222 46677777643
Q ss_pred ------------CcEEEEECCCCeeEE
Q 010754 420 ------------VTAKIWNMKQDKYVH 434 (502)
Q Consensus 420 ------------g~i~iwd~~~~~~~~ 434 (502)
..+.+||..+.+...
T Consensus 266 ~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 266 QLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp C----CCBCCBCCCEEEEETTTTEEEE
T ss_pred CCCCceeccceeeeEEEEeCCCCEehh
Confidence 357788887766543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.25 E-value=3.2 Score=37.94 Aligned_cols=153 Identities=8% Similarity=0.030 Sum_probs=86.4
Q ss_pred CCCCEEEEEE--CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC--------------CeEEEEEcCCC
Q 010754 284 GEGTLLATGS--YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD--------------KTAIVWDVKTE 347 (502)
Q Consensus 284 ~~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d--------------~~i~~wd~~~~ 347 (502)
.+|..|+... .++.|...+.++.....+.... +--+++++.+|+-+... ..|+..++..+
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~----~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT----AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEEE----EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCCc----eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 4566666664 2567777777776555554322 34558889988876543 36777777766
Q ss_pred ceEEEEeeccCCeEEEEecCCCEEEEEe----CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC-CCcE
Q 010754 348 EWKQQFEFHSGPTLDVDWRNNVSFATSS----TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTA 422 (502)
Q Consensus 348 ~~~~~~~~~~~~v~~v~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~-dg~i 422 (502)
+... +. ......+... +..++-.. ....|+..++.... ...+..+.. ..|+|+++.|+-.+. ...|
T Consensus 99 ~~~~-l~--~~~~~~~s~~-g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 99 GSTV-LD--PDPCIYASLI-GNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp CCEE-EE--CSCEEEEEEE-TTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred cceE-ee--cCCccEEEEe-CCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 5332 22 2222333333 33444333 34566666766443 344444432 456788888886665 5678
Q ss_pred EEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 423 ~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
.+-++..+.....+. +... ..++|+|.
T Consensus 170 y~~~l~g~~~~~l~~---~~~~-~~~~P~g~ 196 (302)
T 3s25_A 170 YRYDTASQSEALFYD---CNCY-KPVVLDDT 196 (302)
T ss_dssp EEEETTTTEEEEEEC---SCEE-EEEEEETT
T ss_pred EEEECCCCCEEEEeC---CCcc-ceeeecCC
Confidence 888877665433333 2222 23557765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=94.12 E-value=1.1 Score=40.91 Aligned_cols=144 Identities=12% Similarity=0.124 Sum_probs=76.9
Q ss_pred CCCEEEEEECC-----CeEEEEECCCceEEEecCcc---CCeEEEEEecCCCEEEEEecC-----CeEEEEEcCCCceEE
Q 010754 285 EGTLLATGSYD-----GQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTEEWKQ 351 (502)
Q Consensus 285 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~ 351 (502)
++++++.|+.+ ..+.+||........+.... ..-..+.+ ++..++.|+.+ ..+.+||+.+.++..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 56677777643 46788888765544433211 11122222 55666677654 468999998876654
Q ss_pred EEeeccC-CeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcceE--EEecCCCcEEEEEEcCCCCEEEEEeCC----
Q 010754 352 QFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDD---- 419 (502)
Q Consensus 352 ~~~~~~~-~v~~v~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~--~~~~h~~~i~~l~~sp~g~~las~s~d---- 419 (502)
.-..... .-..+....+..++.|+.+ ..+.+||+.+.+-.. .+.........+.+ ++++++.|+.+
T Consensus 199 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~ 276 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTF 276 (308)
T ss_dssp CCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCB
T ss_pred CCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcc
Confidence 3111110 1112222355566666654 468899988764221 11111111222222 56777777654
Q ss_pred -CcEEEEECCCCee
Q 010754 420 -VTAKIWNMKQDKY 432 (502)
Q Consensus 420 -g~i~iwd~~~~~~ 432 (502)
..+.+||..+.+.
T Consensus 277 ~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 277 LDSVECYDPDTDTW 290 (308)
T ss_dssp CCEEEEEETTTTEE
T ss_pred cceEEEEcCCCCEE
Confidence 3577888877654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.98 E-value=3.6 Score=37.58 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=76.7
Q ss_pred CCCEEEEEECC--------CeEEEEECCCceEEEecCccCCe--EEEEEecCCCEEEEEec-C-----CeEEEEEcCCCc
Q 010754 285 EGTLLATGSYD--------GQARIWSTNGDLKCTLSKHKGPI--FSLKWNKKGDYLLTGSC-D-----KTAIVWDVKTEE 348 (502)
Q Consensus 285 ~g~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~v--~~l~~~~~~~~l~s~~~-d-----~~i~~wd~~~~~ 348 (502)
++.+++.|+.+ ..+.+||.....-..+.....+. .+++. -+++.++.|+. + ..+.+||..+.+
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 56677777632 45888998765544433221111 12222 35566667765 2 468999998876
Q ss_pred eEEEEeeccC-CeEEEEecCCCEEEEEeCCC-----eEEEEEcCCCcceEE--EecCCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 349 WKQQFEFHSG-PTLDVDWRNNVSFATSSTDN-----MIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 349 ~~~~~~~~~~-~v~~v~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~--~~~h~~~i~~l~~sp~g~~las~s~dg 420 (502)
+...-..... .-..+....+..++.|+.++ .+.+||+.+.+-... +.........+.+ ++++++.|+.++
T Consensus 177 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~ 254 (315)
T 4asc_A 177 WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFAT 254 (315)
T ss_dssp EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEE
T ss_pred EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccc
Confidence 6543211111 11122233556677776544 578888877642221 1111111222333 567777776532
Q ss_pred --------------cEEEEECCCCeeE
Q 010754 421 --------------TAKIWNMKQDKYV 433 (502)
Q Consensus 421 --------------~i~iwd~~~~~~~ 433 (502)
.|.+||..+.+..
T Consensus 255 ~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 255 LETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred cCcCCccccccccCcEEEecCCCChhh
Confidence 3677887776543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.57 E-value=4.7 Score=37.57 Aligned_cols=198 Identities=13% Similarity=0.144 Sum_probs=103.7
Q ss_pred CCCceEEEEEcCC----CCeEEEEe--CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 214 HTSEVCACAWSPA----GSLLASGS--GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 214 H~~~V~~~~~~p~----~~~l~sgs--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
..+....|+++|+ +.+.++-+ .+..|.-|.+..+..... ....... .+..+.. ...| ....|.|.|||.
T Consensus 78 g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~-~~~~~~~-i~~~~p~-~~~H--~g~~l~fgpDG~ 152 (347)
T 3das_A 78 GEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGE-QLGAPDT-VFRGIPK-GVIH--NGGRIAFGPDKM 152 (347)
T ss_dssp TTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTC-CBCCCEE-EEEEECC-CSSC--CCCCEEECTTSC
T ss_pred CCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccc-cCCCcEE-EEEcCCC-CCCc--cCccccCCCCCC
Confidence 3466789999995 44444322 344555565554221000 0001111 1122221 1223 356799999998
Q ss_pred EEEEEEC-------------CCeEEEEECCCce---------EEEecCccCCeEEEEEecCCCEEEEE-ecCCeEEEEEc
Q 010754 288 LLATGSY-------------DGQARIWSTNGDL---------KCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDV 344 (502)
Q Consensus 288 ~l~s~~~-------------dg~i~iwd~~~~~---------~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~ 344 (502)
+.++.+. .|.|.-.+.++.. .....+|.. ...++|+|+|..+++= +.|+.-.|--+
T Consensus 153 Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i 231 (347)
T 3das_A 153 LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAI 231 (347)
T ss_dssp EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred EEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEE
Confidence 7777542 3555555655431 122235544 4689999987755542 22322222222
Q ss_pred CCCc------------------eEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcc----eEEEecCCCcEE
Q 010754 345 KTEE------------------WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP----IKTFAGHQGEVN 402 (502)
Q Consensus 345 ~~~~------------------~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~h~~~i~ 402 (502)
..+. ++..+..+......+.|..+..|+..-..+.|....+..... ...+.+....+.
T Consensus 232 ~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~ 311 (347)
T 3das_A 232 KPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLR 311 (347)
T ss_dssp CTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEE
T ss_pred cCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCcc
Confidence 2221 122222122355677777666677666667777777665432 223334446799
Q ss_pred EEEEcCCCCEEEEEe
Q 010754 403 CVKWDPTGSLLASCS 417 (502)
Q Consensus 403 ~l~~sp~g~~las~s 417 (502)
.|+..|||.++++.+
T Consensus 312 dv~~~pDG~lyv~td 326 (347)
T 3das_A 312 TVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEETTEEEEEEC
T ss_pred EEEECCCCcEEEEEc
Confidence 999999998766654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.23 E-value=4.8 Score=36.62 Aligned_cols=145 Identities=12% Similarity=0.133 Sum_probs=77.2
Q ss_pred CCCEEEEEEC----C-----CeEEEEECCCceEEEecCcc---CCeEEEEEecCCCEEEEEecC-----CeEEEEEcCCC
Q 010754 285 EGTLLATGSY----D-----GQARIWSTNGDLKCTLSKHK---GPIFSLKWNKKGDYLLTGSCD-----KTAIVWDVKTE 347 (502)
Q Consensus 285 ~g~~l~s~~~----d-----g~i~iwd~~~~~~~~~~~~~---~~v~~l~~~~~~~~l~s~~~d-----~~i~~wd~~~~ 347 (502)
++.+++.|+. + ..+.+||........+.... .....+.+ ++..++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667777765 2 46788887765544443211 11122222 55666666643 46889999887
Q ss_pred ceEEEEeeccC-CeEEEEecCCCEEEEEeCC-----CeEEEEEcCCCcce--EEEecCCCcEEEEEEcCCCCEEEEEeCC
Q 010754 348 EWKQQFEFHSG-PTLDVDWRNNVSFATSSTD-----NMIYVCKIGENRPI--KTFAGHQGEVNCVKWDPTGSLLASCSDD 419 (502)
Q Consensus 348 ~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~--~~~~~h~~~i~~l~~sp~g~~las~s~d 419 (502)
++...-..... .-..+....+..++.|+.+ ..+.+||+.+.+-. ..+.........+.+ ++++++.|+.+
T Consensus 148 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 225 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYD 225 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCC
Confidence 66543211111 0112222345556666543 45888888766421 111111111222333 56777777654
Q ss_pred -----CcEEEEECCCCeeE
Q 010754 420 -----VTAKIWNMKQDKYV 433 (502)
Q Consensus 420 -----g~i~iwd~~~~~~~ 433 (502)
..+.+||+.+.+..
T Consensus 226 ~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 226 GQDQLNSVERYDVETETWT 244 (308)
T ss_dssp SSSBCCCEEEEETTTTEEE
T ss_pred CCCccceEEEEeCCCCcEE
Confidence 46899999887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.23 E-value=3.9 Score=37.42 Aligned_cols=148 Identities=9% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCCCEEEEEEC----CC-------eEEEEECCCceEEEecCccCC--eEEEEEecCCCEEEEEecC-------CeEEEE
Q 010754 283 NGEGTLLATGSY----DG-------QARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCD-------KTAIVW 342 (502)
Q Consensus 283 s~~g~~l~s~~~----dg-------~i~iwd~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~d-------~~i~~w 342 (502)
..++.+++.|+. ++ .+.+||........+.....+ -.+++.. ++..++.|+.+ ..+.+|
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEE
Confidence 456778888873 12 167788776555444322211 1122222 45666677654 358889
Q ss_pred EcCCCceEEEEeeccC-CeEEEEecCCCEEEEEeC------CCeEEEEEcCCCcceEE--EecCCCcEEEEEEcCCCCEE
Q 010754 343 DVKTEEWKQQFEFHSG-PTLDVDWRNNVSFATSST------DNMIYVCKIGENRPIKT--FAGHQGEVNCVKWDPTGSLL 413 (502)
Q Consensus 343 d~~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~--~~~h~~~i~~l~~sp~g~~l 413 (502)
|..+.++...-..... .-..+....+..++.|+. -..+.+||+.+.+-... +........++.+ +++++
T Consensus 133 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iy 210 (318)
T 2woz_A 133 DPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIV 210 (318)
T ss_dssp ETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEE
T ss_pred eCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEE
Confidence 9988776543211100 001122244555666653 23588899887642211 1111111222222 56777
Q ss_pred EEEeCC-----CcEEEEECCCCeeE
Q 010754 414 ASCSDD-----VTAKIWNMKQDKYV 433 (502)
Q Consensus 414 as~s~d-----g~i~iwd~~~~~~~ 433 (502)
+.|+.+ ..+.+||..+.+..
T Consensus 211 v~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 211 IAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEcCcCCCCccceEEEEECCCCeEE
Confidence 777653 34778998776543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.83 Score=42.87 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=56.2
Q ss_pred CCCEEEEEEC-C---------CeEEEEECCCceEEEecCcc-CCe--EEEEEecCCCEEEEEecC---------------
Q 010754 285 EGTLLATGSY-D---------GQARIWSTNGDLKCTLSKHK-GPI--FSLKWNKKGDYLLTGSCD--------------- 336 (502)
Q Consensus 285 ~g~~l~s~~~-d---------g~i~iwd~~~~~~~~~~~~~-~~v--~~l~~~~~~~~l~s~~~d--------------- 336 (502)
++++++.|+. + ..+.+||........+.... .+. .+++. .+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcC
Confidence 5667777765 2 46888898766554443322 111 12222 456777777754
Q ss_pred ------------------------CeEEEEEcCCCceEEEEeeccC-Ce-EEEEecCCCEEEEEeC------CCeEEEEE
Q 010754 337 ------------------------KTAIVWDVKTEEWKQQFEFHSG-PT-LDVDWRNNVSFATSST------DNMIYVCK 384 (502)
Q Consensus 337 ------------------------~~i~~wd~~~~~~~~~~~~~~~-~v-~~v~~~~~~~~~~~~~------d~~i~i~d 384 (502)
..+.+||..+.++...-..... .. .++....+..++.|+. ...+.+||
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d 223 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELD 223 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEE
Confidence 5799999988876654322211 11 2334445555666553 34567777
Q ss_pred c
Q 010754 385 I 385 (502)
Q Consensus 385 ~ 385 (502)
+
T Consensus 224 ~ 224 (357)
T 2uvk_A 224 F 224 (357)
T ss_dssp C
T ss_pred e
Confidence 6
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.14 E-value=1.9 Score=40.24 Aligned_cols=138 Identities=7% Similarity=-0.038 Sum_probs=65.3
Q ss_pred CeEEEEECCCceEEEecCccC--Ce-EEEEEecCCCEEEEEec------CCeEEEEEc--CCCceEEEEeec-cCC--eE
Q 010754 296 GQARIWSTNGDLKCTLSKHKG--PI-FSLKWNKKGDYLLTGSC------DKTAIVWDV--KTEEWKQQFEFH-SGP--TL 361 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~--~v-~~l~~~~~~~~l~s~~~------d~~i~~wd~--~~~~~~~~~~~~-~~~--v~ 361 (502)
..+.+||........+..... .- .+++.. ++..++.|+. ...+.+||+ .+.++...-... ... -.
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 478899987654443322111 11 233332 4556666653 345777877 555544321111 101 11
Q ss_pred EEEecCCCEEEEEeCC----------------------CeEEEEEcCCCc--ceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 362 DVDWRNNVSFATSSTD----------------------NMIYVCKIGENR--PIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 362 ~v~~~~~~~~~~~~~d----------------------~~i~i~d~~~~~--~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
.+....+..++.|+.+ ..+.+||+.+.+ .+..+......-.++. .++++++.|+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEee
Confidence 2333455566666532 246788887654 2333322222222232 3677888888
Q ss_pred CCC------cEEEEECCCCeeEEEe
Q 010754 418 DDV------TAKIWNMKQDKYVHDL 436 (502)
Q Consensus 418 ~dg------~i~iwd~~~~~~~~~~ 436 (502)
.++ .|.++++++++.+...
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeee
Confidence 643 3555688877766543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.23 Score=46.31 Aligned_cols=140 Identities=13% Similarity=0.153 Sum_probs=83.3
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCc-cCCeEEEEEe--cCCCEEEEE--ecCCeEEEEEcCCCceEEEEeec----
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKH-KGPIFSLKWN--KKGDYLLTG--SCDKTAIVWDVKTEEWKQQFEFH---- 356 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~v~~l~~~--~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~---- 356 (502)
.++++++.||.|.-+|.. |+....+... ..++....-. +.+..++.+ +.||.|..+|..+|.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 478899999999999965 6666666543 1233332111 112234443 58999999999888655444321
Q ss_pred cCCeEE-----E----EecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCC--Cc-----EEEEEEc-----CCCCEEEE
Q 010754 357 SGPTLD-----V----DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQ--GE-----VNCVKWD-----PTGSLLAS 415 (502)
Q Consensus 357 ~~~v~~-----v----~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~--~~-----i~~l~~s-----p~g~~las 415 (502)
..++.. + .-+.++.+++++.++.+...|+.+|+.+..+.... +. ..|.... ..+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 0 00156778999999999999999999998886432 11 1111111 12356777
Q ss_pred EeCCCcEEEEE
Q 010754 416 CSDDVTAKIWN 426 (502)
Q Consensus 416 ~s~dg~i~iwd 426 (502)
++.+..+.+.+
T Consensus 171 g~~~y~v~~~~ 181 (339)
T 2be1_A 171 GKTIFELGIHS 181 (339)
T ss_dssp EEEEEECEECC
T ss_pred ecceEEEEEEC
Confidence 77666666655
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=3.1 Score=43.15 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=62.1
Q ss_pred CCCCEEEEEECCC--eEEEEECCCceEEEecC------ccCCeEEEEEecC-CCEEEEEec--C-----CeEEEEEcCCC
Q 010754 284 GEGTLLATGSYDG--QARIWSTNGDLKCTLSK------HKGPIFSLKWNKK-GDYLLTGSC--D-----KTAIVWDVKTE 347 (502)
Q Consensus 284 ~~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~------~~~~v~~l~~~~~-~~~l~s~~~--d-----~~i~~wd~~~~ 347 (502)
.++.+++.|+.++ .+.+||........+.. ......++.+..+ +..++.|+. + +.+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 3788888888664 68999987765554432 1122233555655 566667765 2 46899999888
Q ss_pred c------eEEEEee--cc-CCeEEEEecCCCEEEEEeC--------CCeEEEEEcCCCc
Q 010754 348 E------WKQQFEF--HS-GPTLDVDWRNNVSFATSST--------DNMIYVCKIGENR 389 (502)
Q Consensus 348 ~------~~~~~~~--~~-~~v~~v~~~~~~~~~~~~~--------d~~i~i~d~~~~~ 389 (502)
. +...... .. .....+.+.++..++.|+. ...+.+||+.+.+
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred ccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 7 3322221 11 1122233332566666663 3458899988764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=9.7 Score=39.39 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=102.6
Q ss_pred CCCCeEEEEeCC----CcEEEEecCCCCccCCCCCCCceeEEEe-eec-CccccCCCCeEEEEECCCCCEEEEEECC---
Q 010754 225 PAGSLLASGSGD----STARIWTIADGTSNGGAQNGPLNVLVLK-HVK-GRTNEKSKDVTTLDWNGEGTLLATGSYD--- 295 (502)
Q Consensus 225 p~~~~l~sgs~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~v~~l~~s~~g~~l~s~~~d--- 295 (502)
.++.+++.|+.+ ..+.+||..+.+... +. ... .........-.++.+..++.+++.|+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~-----------~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~ 464 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDM-----------KNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH 464 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEE-----------EECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEE-----------eccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC
Confidence 456777777753 357778877654211 11 000 0001111122333333267788888754
Q ss_pred ---CeEEEEECCCceEEEecCccCC--eEEEEEecCCCEEEEEecCC--eEEEEEcCCCceEEEEee-----ccCCeEEE
Q 010754 296 ---GQARIWSTNGDLKCTLSKHKGP--IFSLKWNKKGDYLLTGSCDK--TAIVWDVKTEEWKQQFEF-----HSGPTLDV 363 (502)
Q Consensus 296 ---g~i~iwd~~~~~~~~~~~~~~~--v~~l~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~-----~~~~v~~v 363 (502)
..+.+||..............+ -.+++...++..++.|+.++ .+.+||..+..+...-.. .......+
T Consensus 465 ~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~ 544 (695)
T 2zwa_A 465 QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL 544 (695)
T ss_dssp CBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE
T ss_pred CccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE
Confidence 3578888776554443322111 12223323778888887655 699999988876543210 01111223
Q ss_pred EecC--CCEEEEEeC--C-----CeEEEEEcCCCcc-----eEEEec---C-CCcEEEEEEcCCCCEEEEEeC-------
Q 010754 364 DWRN--NVSFATSST--D-----NMIYVCKIGENRP-----IKTFAG---H-QGEVNCVKWDPTGSLLASCSD------- 418 (502)
Q Consensus 364 ~~~~--~~~~~~~~~--d-----~~i~i~d~~~~~~-----~~~~~~---h-~~~i~~l~~sp~g~~las~s~------- 418 (502)
.+.. +..++.|+. + +.+.+||+.+..- -..+.. . .... +++...++++++.|+.
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~ 623 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFD 623 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCC
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCC
Confidence 3332 345666654 2 4588999988761 111111 1 1112 2223333677777774
Q ss_pred -CCcEEEEECCCCeeE
Q 010754 419 -DVTAKIWNMKQDKYV 433 (502)
Q Consensus 419 -dg~i~iwd~~~~~~~ 433 (502)
...|.+||..+.+..
T Consensus 624 ~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 624 RTNSIISLDPLSETLT 639 (695)
T ss_dssp TTTSEEEEETTTTEEE
T ss_pred CCCeEEEEECCCCeEE
Confidence 345899999887754
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=90.35 E-value=0.1 Score=37.22 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=28.1
Q ss_pred chhhHHHHHHHHhcCCcchhhcccccccCc
Q 010754 7 EELNYLVFRYLQESGLLHSAFVLGYEAGIN 36 (502)
Q Consensus 7 ~evn~li~rYlqE~g~~~sA~~~~~e~~~~ 36 (502)
+|+|.-|..||+.+||..++-+|..|..++
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~ 40 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAELD 40 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcCC
Confidence 799999999999999999999999997766
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.24 E-value=7.6 Score=34.93 Aligned_cols=178 Identities=12% Similarity=0.011 Sum_probs=92.9
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCC--ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNG--DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
.|..++.-.. +.+.-. ||.|..|-.+. .+-. -......|..++..... .++. . ||.|+.|-......+..-
T Consensus 25 ~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 4666665432 333335 89999997542 1111 11123467777654432 2333 4 999999976432211111
Q ss_pred eeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 010754 354 EFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 354 ~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~ 433 (502)
..-...|..|+......++.. +|.|+.|-......+..-......|..|+......++ -. ||.|+.|-......+
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTT
T ss_pred cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCC
Confidence 111235777777666656555 9999999866533222111123457777665443222 33 789999976542222
Q ss_pred EEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 434 HDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 434 ~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
..-..-...|..|+....-. +++ .++.+..|-
T Consensus 173 g~p~~~~~~v~~i~~G~~hs--------~al--~~G~v~~wG 204 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFHS--------LAL--KDGKVIAWG 204 (282)
T ss_dssp SCCGGGGSSEEEEEECSSEE--------EEE--ETTEEEEEE
T ss_pred CCceecCCCeEEEEecCCEE--------EEE--ECCeEEEEE
Confidence 11111234577776655433 333 466666663
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=88.91 E-value=17 Score=40.49 Aligned_cols=177 Identities=8% Similarity=0.079 Sum_probs=97.7
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE--
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-- 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-- 293 (502)
.+|.-=.|-. .+.|+..+. ..|.-|++.... .|..+ +..+..-....|..-.-+++.++++..|
T Consensus 106 e~VvfWkWis-~~~l~lVT~-~aVyHW~~~~~s-------~P~k~-----fdR~~~L~~~QIinY~~d~~~kW~~l~gi~ 171 (1630)
T 1xi4_A 106 DDVTFWKWIS-LNTVALVTD-NAVYHWSMEGES-------QPVKM-----FDRHSSLAGCQIINYRTDAKQKWLLLTGIS 171 (1630)
T ss_pred CCceEEEecC-CCeeEEEcC-CeEEEeccCCCC-------ccHHH-----HhcchhcccCeeEEeeeCCCCCeEEEEeec
Confidence 3455556653 334554443 579999996521 11111 1111111135577778888888776554
Q ss_pred -----CCCeEEEEECCCceEEEecCccCCeEEEEEe--cCC-CEEEEEec---CCeEEEEEcCCC---ceE------EEE
Q 010754 294 -----YDGQARIWSTNGDLKCTLSKHKGPIFSLKWN--KKG-DYLLTGSC---DKTAIVWDVKTE---EWK------QQF 353 (502)
Q Consensus 294 -----~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~--~~~-~~l~s~~~---d~~i~~wd~~~~---~~~------~~~ 353 (502)
-.|.+.+|+.+.+..+.+.+|.+....+... +.. +.+..+.. .+.+.|.++... ... ..+
T Consensus 172 ~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~ 251 (1630)
T 1xi4_A 172 AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 251 (1630)
T ss_pred cCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccccc
Confidence 2488999999888888888887665555543 111 22222222 368888887432 110 000
Q ss_pred ee---ccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEE
Q 010754 354 EF---HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW 406 (502)
Q Consensus 354 ~~---~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~ 406 (502)
.. ..+-...+..++ .+.+...+.-|.|++||+.++.++..-+-...+|...+-
T Consensus 252 ~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~ 308 (1630)
T 1xi4_A 252 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAP 308 (1630)
T ss_pred CCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEecc
Confidence 00 011122233322 345667788999999999999887655544444444433
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.56 E-value=9.6 Score=41.05 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 010754 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDL 436 (502)
Q Consensus 400 ~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~ 436 (502)
.+.+++..++..++++-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5778888888999999999999999999999988764
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=80.56 E-value=29 Score=33.76 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=60.9
Q ss_pred CCeEEEEEecCCC-EEEEEecCCeEEEEEcCCCc---eEEEEe---e------ccCCeEEEEecCC----CEE-EEEeC-
Q 010754 316 GPIFSLKWNKKGD-YLLTGSCDKTAIVWDVKTEE---WKQQFE---F------HSGPTLDVDWRNN----VSF-ATSST- 376 (502)
Q Consensus 316 ~~v~~l~~~~~~~-~l~s~~~d~~i~~wd~~~~~---~~~~~~---~------~~~~v~~v~~~~~----~~~-~~~~~- 376 (502)
...+.|+|.|+|. .|+++...|.|++++..... .+..+. . .......|+++|+ ..| ++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3458899999996 56666789999999753221 122111 0 1346788999885 333 33221
Q ss_pred -C----------CeEEEEEcCCC----------cceEEEe--cCCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 377 -D----------NMIYVCKIGEN----------RPIKTFA--GHQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 377 -d----------~~i~i~d~~~~----------~~~~~~~--~h~~~i~~l~~sp~g~~las~s~dg 420 (502)
+ ..|.-|.+..+ +.+..+. ........|+|.|||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 14444555421 1222332 1123467899999998877766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 502 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-37 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-26 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-22 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-26 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-24 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-23 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-21 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-20 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-19 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-15 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-15 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-13 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-14 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 8e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-13 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-13 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-12 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-11 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 5e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-05 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 136 bits (343), Expect = 5e-37
Identities = 55/290 (18%), Positives = 99/290 (34%), Gaps = 47/290 (16%)
Query: 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
L GH S V + P S++ S S D+T ++W G + +V +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 271 NEKSKD-------------------------VTTLDWNGEGTLLATGSYDGQARIWSTNG 305
S V+++ G + + S D ++W
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 306 D-LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364
T + H+ + ++ N+ G + + S D+T VW V T+E K + H +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 365 WRNNVS---------------------FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNC 403
W S + S D I + + + T GH V
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
V + G + SC+DD T ++W+ K + + L H + ++ + T
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 105 bits (262), Expect = 7e-26
Identities = 45/222 (20%), Positives = 75/222 (33%), Gaps = 45/222 (20%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG---GAQNGPLNVLVLK 264
V GH V + G+L+AS S D T R+W +A ++ +
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195
Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKW 323
+ ++ T G L +GS D ++W + G TL H + + +
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 255
Query: 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVC 383
+ G ++L+ + DKT VWD K
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKN------------------------------------- 278
Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW 425
R +KT H+ V + + T + + S D T K+W
Sbjct: 279 ----KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 96.7 bits (239), Expect = 1e-22
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 2/206 (0%)
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
VT + ++ +++ + S D ++W GD + TL H + + ++ G L +
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76
Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPI 391
S D T +WD + E + H V N ++S D I + ++ +
Sbjct: 77 CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136
Query: 392 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451
KTF GH+ V V+ + G+L+ASCS+D T ++W + + +LREH + I W+P
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196
Query: 452 GSGTNNPNQQLILARLIPYFLYWICS 477
S ++ + ++ S
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLS 222
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 90.6 bits (223), Expect = 1e-20
Identities = 33/156 (21%), Positives = 66/156 (42%), Gaps = 1/156 (0%)
Query: 299 RIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
+ W K LS H+ P+ + ++ +++ S D T VWD +T ++++ + H+
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 60
Query: 359 PTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCS 417
D+ + ++ S + +M + GH V+ V P G + S S
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
D T K+W ++ V H + + +R + G+
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 156
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 77.9 bits (190), Expect = 2e-16
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)
Query: 195 TSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ 254
E + G L SGS D T ++W ++ G
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM------ 238
Query: 255 NGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSK 313
L + G N V + ++ G + + + D R+W N TL+
Sbjct: 239 -------CLMTLVGHDNW----VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287
Query: 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343
H+ + SL ++K Y++TGS D+T VW+
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.1 bits (157), Expect = 4e-12
Identities = 18/104 (17%), Positives = 43/104 (41%)
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
+GH+ V V + P S++ S S+D T K+W+ + + L+ H+ + I +
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67
Query: 449 SPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYFGTTERANLP 492
+G + + + + I +++ + + +P
Sbjct: 68 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 111
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 108 bits (269), Expect = 1e-26
Identities = 49/276 (17%), Positives = 83/276 (30%), Gaps = 32/276 (11%)
Query: 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK----- 264
L GH +++ A W LL S S D IW V+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 265 ----HVKGRTNEKSKDVTTLDWNGEGTLLATGSYD--------------------GQARI 300
++ T + N + G A
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 301 WSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360
G T + H G + SL ++G+CD +A +WDV+ +Q F H
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 361 LDVDW-RNNVSFATSSTDNMIYV--CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417
+ + N +FAT S D + + + + + V + +G LL +
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289
Query: 418 DDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
DD +W+ + L H + + + G
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 100 bits (250), Expect = 4e-24
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 4/157 (2%)
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
+ DV +L + L +G+ D A++W G + T + H+ I ++ + G+ T
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 333 GSCDKTAIV--WDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATSSTDNMIYVCKIGENR 389
GS D T + E + V + + D V +
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
AGH V+C+ G +A+ S D KIWN
Sbjct: 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 59.4 bits (142), Expect = 3e-10
Identities = 20/96 (20%), Positives = 34/96 (35%)
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
R +T GH ++ + W LL S S D IW+ VH + S + T +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 449 SPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYFG 484
+P+G+ I + + + G
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 242
+L GH + V + G +A+GS DS +IW
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 98.7 bits (244), Expect = 4e-23
Identities = 50/284 (17%), Positives = 97/284 (34%), Gaps = 52/284 (18%)
Query: 198 SESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGP 257
+ + + N + + + + +SP G LA+G+ D RIW I + Q
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163
Query: 258 LNV-------------------------LVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292
++ L + + T G+G +A G
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG 223
Query: 293 SYDGQARIWSTNGDLKC--------TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
S D R+W + + + HK ++S+ + + G +++GS D++ +W++
Sbjct: 224 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283
Query: 345 KTEE------------WKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPI 391
+ + + H L V N + + S D + P+
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 392 KTFAGHQGEVNCV------KWDPTGSLLASCSDDVTAKIWNMKQ 429
GH+ V V P ++ A+ S D A+IW K+
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.9 bits (229), Expect = 4e-21
Identities = 44/309 (14%), Positives = 97/309 (31%), Gaps = 18/309 (5%)
Query: 171 VNSKPEENGVLQGEKGPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLL 230
++ + ++ + + + ++ ++ HTS VC +S G L
Sbjct: 21 LDLDSQSVPDALKKQTNDYYILYNPALPREIDV---ELHKSLDHTSVVCCVKFSNDGEYL 77
Query: 231 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD-VTTLDWNGEGTLL 289
A+G + T +++ ++DG+ + +++ ++ S + ++ ++ +G L
Sbjct: 78 ATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136
Query: 290 ATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEW 349
ATG+ D RIW + + L +
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196
Query: 350 KQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENR-------PIKTFAGHQGE 400
V A S D + V ++ GH+
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256
Query: 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTN---- 456
V V + G + S S D + K+WN++ D + + + +
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316
Query: 457 NPNQQLILA 465
N + IL+
Sbjct: 317 TQNDEYILS 325
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.2 bits (232), Expect = 2e-21
Identities = 41/299 (13%), Positives = 79/299 (26%), Gaps = 49/299 (16%)
Query: 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH 265
+ + H +++ + + S S SGD ++W +N
Sbjct: 5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDN----KLLDNENPKDKSYSHFV 58
Query: 266 VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-----------LKCTLSKH 314
K + E L+AT S+ G + +
Sbjct: 59 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMK 118
Query: 315 KGPIFSLKWNKKGD-----YLLTGSCDKTAIVWDV-KTEEWKQQFEFHSGPTLD------ 362
K ++LKW D L+ T +W + + PTL+
Sbjct: 119 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 178
Query: 363 -----------VDWRNNVSFATSSTDNMIYVCK------IGENRPIKTFAGHQGEVNCVK 405
VD AT + + + + + + + + VK
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 406 WDPTGSLLASCSDDVTA---KIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461
+ P GSLLA D + ++ + + + L + S
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (187), Expect = 8e-16
Identities = 32/278 (11%), Positives = 67/278 (24%), Gaps = 45/278 (16%)
Query: 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277
+ L+A+ S + I L++L K +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW--ALKW 127
Query: 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKC-------------------TLSKHKGPI 318
+ L G IW + +
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187
Query: 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW-------RNNVSF 371
S+ +++G + TG + T + ++ T FE + +
Sbjct: 188 TSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246
Query: 372 ATSSTDNMIYVCKI----------------GENRPIKTFAGHQGEVNCVKWDPTGSLLAS 415
A + N + ++ H V + ++ +G L S
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306
Query: 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
D + W++K + + L H +I
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 344
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 32/220 (14%), Positives = 54/220 (24%), Gaps = 52/220 (23%)
Query: 314 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF------HSGPTLDVDWRN 367
H IFS+ + ++ S D VWD K + + + H VD
Sbjct: 13 HDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 368 NVSF--------ATSSTDNMIYVCKIGENRPIKTFAG----------HQGEVNCVKWDPT 409
+ AT+S + +I K + +KW +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 410 G-----SLLASCSDDVTAKIWNMKQDKY------------------VHDLREHSKEIYTI 446
L + T IW V S+ ++
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 447 RWSPTG---SGTNNPNQQLILARLIPYFLYWICSIYFKYF 483
S G +G NN Q+ + +
Sbjct: 191 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.3 bits (217), Expect = 9e-20
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 24/244 (9%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
+L+GH V C G+ + SGS D+T ++W+ G L+ +
Sbjct: 9 PKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-------------CLRTLV 54
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG 327
G T V + + + +C + + +
Sbjct: 55 GHTG----GVWSSQMRDN---IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 107
Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE 387
+++GS D T VWD++T + H V + + + D M+ V
Sbjct: 108 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-VVSGAYDFMVKVWDPET 166
Query: 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
+ T GH V +++D G + S S D + ++W+++ +H L H +
Sbjct: 167 ETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224
Query: 448 WSPT 451
Sbjct: 225 LKDN 228
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.5 bits (189), Expect = 3e-16
Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 16/162 (9%)
Query: 282 WNGEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340
+G + +GS D R+W + TL+ H+ ++ + L++G+ D T
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVK 240
Query: 341 VWDVKTEEWK---QQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTF--- 394
+WD+KT + Q H + + N TSS D + + + I+
Sbjct: 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF-VITSSDDGTVKLWDLKTGEFIRNLVTL 299
Query: 395 --AGHQGEVNCVKWDPTGSLLASCSDDVTA----KIWNMKQD 430
G G V ++ T + A S + T + + D
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (188), Expect = 4e-16
Identities = 51/271 (18%), Positives = 106/271 (39%), Gaps = 29/271 (10%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSG-------------------DSTARIWTIADGT 248
+ L GHT V + + S ST R + +
Sbjct: 50 LRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR 109
Query: 249 SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD-L 307
G+++ L V ++ + +G + +G+YD ++W +
Sbjct: 110 VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC 169
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367
TL H ++SL+++ G ++++GS D + VWDV+T H T ++ ++
Sbjct: 170 LHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227
Query: 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKW-DPTGSLLASCSDDVTAKIWN 426
N+ + + D+ + + I + ++T G + V + + + SDD T K+W+
Sbjct: 228 NI-LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 286
Query: 427 MKQDKYVHDLRE-----HSKEIYTIRWSPTG 452
+K +++ +L ++ IR S T
Sbjct: 287 LKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 1e-11
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 1/116 (0%)
Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443
+ GE + K GH V G+ + S SDD T K+W+ K + L H+ +
Sbjct: 2 RRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 444 YTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYFGTTERANLPLHLACSD 499
++ + + + ++ L + + + D
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 116
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 2e-11
Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 45/192 (23%)
Query: 301 WSTNGDLKC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSG 358
W G+LK L H + + G+ +++GS D T VW T + + H+G
Sbjct: 1 WRR-GELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 359 PTLDVDWRNNV---------------------------------------SFATSSTDNM 379
R+N+ + S D
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118
Query: 380 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439
+ V I + + GH V CV++D + S + D K+W+ + + +H L+ H
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGH 176
Query: 440 SKEIYTIRWSPT 451
+ +Y++++
Sbjct: 177 TNRVYSLQFDGI 188
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 5e-06
Identities = 14/121 (11%), Positives = 34/121 (28%)
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEV 401
W + + + H + + S DN + V + ++T GH G V
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60
Query: 402 NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQ 461
+ + S + + + + + SG+ + +
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120
Query: 462 L 462
+
Sbjct: 121 V 121
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 16/98 (16%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
+ + + + + S D T ++W + G + LV G
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE--------FIRNLVTLESGGSGGV- 307
Query: 274 SKDVTTLDWNGEGTLLATGSYDG----QARIWSTNGDL 307
V + + + A GS +G + + + D+
Sbjct: 308 ---VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 342
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 88.0 bits (216), Expect = 2e-19
Identities = 31/211 (14%), Positives = 62/211 (29%), Gaps = 10/211 (4%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTG 333
++ WN + T +A + + I+ +G+ L +H G + + W + ++T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI-------G 386
D+ A VW +K WK R + + + V I
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
+ V + W P LLA+ S D +I++ +
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 447 RWSPTGSGTNNPNQQLILARLIPYFLYWICS 477
+++ + S
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVS 220
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 78.7 bits (192), Expect = 1e-16
Identities = 33/266 (12%), Positives = 66/266 (24%), Gaps = 41/266 (15%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
+ AW+ + +A + I+ + + V LK G+
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK--------WVQVHELKEHNGQ---- 53
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD--------------------------L 307
VT +DW + + T D A +W+ G
Sbjct: 54 ---VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 110
Query: 308 KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRN 367
I + + V + S +
Sbjct: 111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSA 170
Query: 368 NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427
+ + K+ + + G V+ V + GS +A S D T + +
Sbjct: 171 YIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
Query: 428 KQDKYVHDLREHSKEIYTIRWSPTGS 453
+ V L + + + + S
Sbjct: 231 DKKMAVATLASETLPLLAVTFITESS 256
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.6 bits (189), Expect = 4e-16
Identities = 44/297 (14%), Positives = 78/297 (26%), Gaps = 51/297 (17%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI----------------------- 244
V L+ H +V W+P + + + D A +WT+
Sbjct: 44 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103
Query: 245 --ADGTSNGGAQNGPLNVLVLKHVKG------RTNEKSKDVTTLDWNGEGTLLATGSYDG 296
+ G+ + +++ + V +LDW+ LLA GS D
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163
Query: 297 QARIWSTNGD-------------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 337
+ RI+S L S G + + ++ G + S D
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223
Query: 338 TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGH 397
T + D + + P L V + S + D + +F G
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGR 283
Query: 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSG 454
+ + D A H + I G
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKA 339
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.5 bits (168), Expect = 2e-13
Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 39/137 (28%)
Query: 312 SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF 371
S PI WNK + + +++ +W Q
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------- 43
Query: 372 ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
+ H G+V V W P + + +C D A +W +K
Sbjct: 44 -------------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84
Query: 432 YVHDLREHSKEIYTIRW 448
+ L
Sbjct: 85 WKPTLVILRINRAARCV 101
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.1 bits (167), Expect = 3e-13
Identities = 34/231 (14%), Positives = 74/231 (32%), Gaps = 8/231 (3%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
S V + W P LLA+GS D RI++ P + +
Sbjct: 140 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 199
Query: 274 SKD-VTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHK-GPIFSLKWNKKGDYLL 331
S V + ++ G+ +A S+D + + + + P+ ++ + + +
Sbjct: 200 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA 259
Query: 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI 391
G D +++ + K F R + + +
Sbjct: 260 AGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGA 318
Query: 392 KTFAGHQGEVNCVKWDPTG----SLLASCSDDVTAKIWNMK-QDKYVHDLR 437
+ H+ V+ + G S + D IW+++ + + DL+
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.3 bits (183), Expect = 1e-15
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 15/144 (10%)
Query: 293 SYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351
S D ++W+T + TL+ HK I L++ +++GS D T +WD++ +
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 212
Query: 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI---------GENRPIKTFAGHQGEVN 402
E H +N + + D I V + ++T H G V
Sbjct: 213 VLEGHEELV-RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 271
Query: 403 CVKWDPTGSLLASCSDDVTAKIWN 426
+++D + S S D T IW+
Sbjct: 272 RLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (178), Expect = 5e-15
Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 6/238 (2%)
Query: 263 LKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSL 321
L+ + R+ E SK V L ++ + +G D +IW N + K L+ H G + L
Sbjct: 5 LQRIHCRS-ETSKGVYCLQYDD--QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 322 KWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIY 381
+++++ + + + L + V+ + + +
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 382 VCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441
+ + + GH+ VN V +D + S S D T K+WN ++V L H +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKR 179
Query: 442 EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYFGTTERANLPLHLACSD 499
I +++ + + + + L + + + + N + D
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD 237
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.6 bits (150), Expect = 2e-11
Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 41/278 (14%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGT------------------- 248
+ + V + + SG D+T +IW
Sbjct: 8 IHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 249 --SNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWS---- 302
G+ + + V + + L ++ T S D +W
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125
Query: 303 TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLD 362
T+ L+ L H+ + + ++ K + S D+T VW+ T E+ + H
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183
Query: 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
+ +R+ + + S+DN I + I ++ GH+ V C+++D + S + D
Sbjct: 184 LQYRDRL-VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK--RIVSGAYDGKI 240
Query: 423 KIWNM---------KQDKYVHDLREHSKEIYTIRWSPT 451
K+W++ + L EHS ++ +++
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF 278
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 33/146 (22%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
V L GH + + L+ SGS D+T R+W ++
Sbjct: 171 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWD-------------------IECGA 209
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKC----------TLSKHKGP 317
+ + + + +G+YDG+ ++W L TL +H G
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269
Query: 318 IFSLKWNKKGDYLLTGSCDKTAIVWD 343
+F L+++ +++ S D T ++WD
Sbjct: 270 VFRLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (180), Expect = 4e-15
Identities = 40/244 (16%), Positives = 68/244 (27%), Gaps = 30/244 (12%)
Query: 211 LEGHTSEVCACAWSPAGSLLASGSGDST---------------------------ARIWT 243
+ + +C P G L G ST A
Sbjct: 93 CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152
Query: 244 IADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWST 303
S N + L + + + + + +D + +GT L TG D R W
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
+ IFSL + G++L G V V + Q H L +
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH-LHESCVLSL 271
Query: 364 DW-RNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422
+ F ++ DN++ + I V + + S D A
Sbjct: 272 KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 423 KIWN 426
++
Sbjct: 331 TVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 3e-13
Identities = 27/244 (11%), Positives = 63/244 (25%), Gaps = 17/244 (6%)
Query: 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
H VCA S + +G ++W I+ + + R N
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPG--------NKSPVSQLDCLNRDNY 99
Query: 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
+ + +G L G IW ++ +
Sbjct: 100 ----IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155
Query: 333 GSCDKTAIVWDVKTEE---WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENR 389
+ V +QF+ H+ +D N+ + + +
Sbjct: 156 CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215
Query: 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWS 449
++ + + PTG + + + + L H + +++++
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA 274
Query: 450 PTGS 453
G
Sbjct: 275 YCGK 278
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 4e-13
Identities = 17/65 (26%), Positives = 25/65 (38%)
Query: 280 LDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTA 339
L + G + D W T SK + S + Y++TGS DK A
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKA 330
Query: 340 IVWDV 344
V++V
Sbjct: 331 TVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.5 bits (137), Expect = 1e-09
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 7/70 (10%)
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-----VHDLREHSKEI 443
R I T H V V + + K+W++ D I
Sbjct: 43 RQINTL-NHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYI 100
Query: 444 YTIRWSPTGS 453
+ + P G
Sbjct: 101 RSCKLLPDGC 110
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.1 bits (136), Expect = 1e-09
Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 20/237 (8%)
Query: 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284
PA S + G + D G + L H + V + +
Sbjct: 11 PAYSFHVTADGQMQP-VPFPPDALIGPGIPRHARQINTLNH--------GEVVCAVTISN 61
Query: 285 EGTLLATGSYDGQARIWSTNGD------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338
+ TG G ++W + + I S K G L+ G T
Sbjct: 62 PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120
Query: 339 AIVWDVKTEEWKQQFEFHS---GPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA 395
+WD+ + + E S ++ + +D I V + ++ F
Sbjct: 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ 180
Query: 396 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
GH +C+ G+ L + D ++ + + +I+++ + PTG
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLD-NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTG 236
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 2e-07
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 192 IATTSASES---FEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 244
+T + P +S V +C S + +GSGD A ++ +
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 3e-07
Identities = 20/211 (9%), Positives = 40/211 (18%), Gaps = 38/211 (18%)
Query: 274 SKDVTTLDWNGEGTLLATG-SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
SK + +G + D + H + ++ + ++ T
Sbjct: 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYT 68
Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK 392
G VWD+ K
Sbjct: 69 GG-KGCVKVWDISHPGNKSPVSQL------------------------------------ 91
Query: 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
+ K P G L + T IW++ S + +
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 453 SGTNNPNQQLILARLIPYFLYWICSIYFKYF 483
+ + F+
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 71.0 bits (172), Expect = 6e-14
Identities = 24/314 (7%), Positives = 58/314 (18%), Gaps = 56/314 (17%)
Query: 192 IATTSASESFEIPNSDVTILE-GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSN 250
IA S ++F S +L+ + + + T
Sbjct: 18 IAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77
Query: 251 GGAQNGPLNVLVL--------------------------KHVKGRTNEKSKDVTTLDWNG 284
L + + +T +
Sbjct: 78 AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD 137
Query: 285 EGTLLA----------TGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
+A G ++ G + ++ ++ L S
Sbjct: 138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197
Query: 335 CDKTAIVWDVKTEEWK-------QQFEFHSGPTLDVDWRNNVSFATSSTDNM-------- 379
D + G + + ++
Sbjct: 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 257
Query: 380 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439
G+ R I + + + +++K K + E
Sbjct: 258 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEV 313
Query: 440 SKEIYTIRWSPTGS 453
+ +R S
Sbjct: 314 KNNLTDLRLSADRK 327
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 64.1 bits (154), Expect = 1e-11
Identities = 13/163 (7%), Positives = 36/163 (22%), Gaps = 21/163 (12%)
Query: 204 PNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL 263
S ++ P +G D + + G
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY--------- 266
Query: 264 KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKW 323
+ + G + +++ K + L+
Sbjct: 267 -RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT---RKVTEVKNNLTDLRL 322
Query: 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
+ ++ D + ++ E ++ T++ D R
Sbjct: 323 SADRKTVMVRKDDGKIYTFPLEKPEDER--------TVETDKR 357
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 10/169 (5%), Positives = 32/169 (18%), Gaps = 20/169 (11%)
Query: 276 DVTTLDWNGEGTLLATGSYDGQARIWST--------NGDLKCTLSKHKGPIFSLKWNKKG 327
++ + L SY + G K +
Sbjct: 180 HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239
Query: 328 DYLLTGSCDKTAIVWDVKTEEWK----QQFEFHSGPTLDVDWRNN----VSFATSSTDNM 379
G D + + L + + + +
Sbjct: 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299
Query: 380 IYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428
+ + + + + ++ + DD + ++
Sbjct: 300 LLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 58.0 bits (138), Expect = 8e-10
Identities = 27/255 (10%), Positives = 56/255 (21%), Gaps = 40/255 (15%)
Query: 220 ACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278
A +SP G L+A S A I ++ VL + +
Sbjct: 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGT-----------YVLKVPE--------PLRIR 46
Query: 279 TLDWNGEGTLLATGSYDG--QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD 336
+ G+ + I+ ++ G +F++ ++ G + + +
Sbjct: 47 YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR 106
Query: 337 KTAIVWDVKTEEWKQQFEFHSGPTLDV----------DWRNNVSFATSSTDNMIYVCKIG 386
+ D++T + D T
Sbjct: 107 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 166
Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-------VHDLREH 439
E R I +D L S + + +
Sbjct: 167 EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226
Query: 440 SKEIYTIRWSPTGSG 454
+ P
Sbjct: 227 PGSPNPTKLVPRSMT 241
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 47.2 bits (110), Expect = 3e-06
Identities = 3/64 (4%), Positives = 10/64 (15%)
Query: 186 GPEPMDIATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIA 245
G + + + + S + D + +
Sbjct: 285 GEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Query: 246 DGTS 249
Sbjct: 345 KPED 348
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.6 bits (168), Expect = 1e-13
Identities = 38/308 (12%), Positives = 74/308 (24%), Gaps = 79/308 (25%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTA-RIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
+ ++ P + +A G S R D + V T
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSK--------------VPPVVQFTGH 61
Query: 273 KSKDVTTLDW--NGEGTLLATGSYDGQARIWSTNGDL---------KCTLSKHKGPIFSL 321
S VTT+ + L +G G+ +W D K GPI +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 322 KWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-----VSFATS 374
W+ +G L D + + + HS + + ++
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT------------------------- 409
+ + +T V V++ P
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 410 ---------------------GSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRW 448
A+ D T ++W++ K V +++ +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301
Query: 449 SPTGSGTN 456
+G
Sbjct: 302 GVVATGNG 309
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 2e-08
Identities = 34/280 (12%), Positives = 71/280 (25%), Gaps = 69/280 (24%)
Query: 208 VTILEGH-TSEVCACAWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264
V GH +S V +SP L SG +W + +
Sbjct: 55 VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEV--------- 105
Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS------------ 312
+VK + ++ + W+ EG L + D +L
Sbjct: 106 NVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINAC 165
Query: 313 -------------------------------------KHKGPIFSLKWNKKGDYLLTGSC 335
K + ++++ +
Sbjct: 166 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 225
Query: 336 DKTAIVW-----DVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390
I + + E G + W ++ FAT D I V + ++
Sbjct: 226 SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKC 285
Query: 391 IKTFAGHQGEVNCVKWD---PTGSLLASCSDDVTAKIWNM 427
++ + + ++ + + S S D T + +
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 20/153 (13%), Positives = 35/153 (22%), Gaps = 51/153 (33%)
Query: 312 SKHKGPIFSLKWNKKGDYLLTGSCDKTAI-VWDVKTEEWKQQFEFHSGPTLDVDWRNNVS 370
S + L ++ + + + D
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD------------------------ 49
Query: 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPT--GSLLASCSDDVTAKIWNM 427
+ P+ F GH V VK+ P L S + +W
Sbjct: 50 ---------------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 94
Query: 428 KQDKYVHDL--------REHSKEIYTIRWSPTG 452
DK + + + + I I W G
Sbjct: 95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 127
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 2e-04
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 395 AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDKY--VHDLREH-SKEIYTIRWSP 450
+ + + +DPT + +A + + K V H S + T+++SP
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 451 TGSGT 455
Sbjct: 74 IKGSQ 78
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.5 bits (168), Expect = 2e-13
Identities = 29/146 (19%), Positives = 55/146 (37%), Gaps = 5/146 (3%)
Query: 308 KCTLSKHKGPIFS-LKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366
+ TL H + + L++ +Y++TG+ DK V+D +++ Q H G + +
Sbjct: 5 RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 367 NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE--VNCVKWDPTGSLLASCSDDVTAKI 424
+ + STD + V I + F GH + + + S D T +
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 425 WNMKQDKYVHDLREHSKEIYTIRWSP 450
W + ++ V D E
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPE 148
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.9 bits (156), Expect = 5e-12
Identities = 43/264 (16%), Positives = 84/264 (31%), Gaps = 42/264 (15%)
Query: 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKG 268
T L GH + V C + + +G+ D R++ + L + G
Sbjct: 6 TTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKK-------------FLLQLSG 51
Query: 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGP--IFSLKWNKK 326
V L + G L++ + G H + K
Sbjct: 52 HDGG----VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107
Query: 327 GDYLLTGSCDKTAIVWDVKTEE----------------------WKQQFEFHSGPTLDVD 364
Y++TGS D T VW + E + ++
Sbjct: 108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167
Query: 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
+ + S DN + V + + + + +GH + +D S S D T +I
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 227
Query: 425 WNMKQDKYVHDLREHSKEIYTIRW 448
W+++ + ++ L+ H+ + +R
Sbjct: 228 WDLENGELMYTLQGHTALVGLLRL 251
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.7 bits (145), Expect = 1e-10
Identities = 46/294 (15%), Positives = 93/294 (31%), Gaps = 52/294 (17%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLAS----------------------------------- 232
+ L GH V A ++ G L++
Sbjct: 46 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105
Query: 233 --------GSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV----TTL 280
GS D+T +W + +S LV + +
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165
Query: 281 DWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTA 339
+G G ++ +GSYD +W LS H I+S ++ + ++ S D T
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT- 224
Query: 340 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG 399
+ E + + L R + F S+ + + K H
Sbjct: 225 -IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 283
Query: 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWSPTG 452
+ + ++L S S++ I+N++ K VH ++ + + +I+++ +
Sbjct: 284 LSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGKT 336
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.0 bits (138), Expect = 1e-09
Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 393 TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
T GH V + + + +DD ++++ K++ L H ++ ++++ G
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 7/78 (8%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 349 WKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWD 407
++ H+ + + + + S ++N + + + + ++ V +
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK 333
Query: 408 PTGSLLASCSDDVTAKIW 425
L+A+ D + +
Sbjct: 334 GKT-LVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
HT+ + + ++L SGS ++ I+ + G K V +
Sbjct: 281 HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG----------------KLVHANILKD 323
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIW 301
+ + ++++ G+ TL+A DGQ+ +
Sbjct: 324 ADQIWSVNFKGK-TLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 2e-06
Identities = 8/91 (8%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQ 351
+ + D S H + ++ D +L + ++++++ +
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318
Query: 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYV 382
+ V+++ A D ++
Sbjct: 319 NILKDADQIWSVNFKGKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.004
Identities = 3/34 (8%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 209 TILEGHTSEVCACAWSPAGSLLASGSGDSTARIW 242
+ ++ + + +L+A+ D + +
Sbjct: 318 ANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 2e-12
Identities = 28/285 (9%), Positives = 62/285 (21%), Gaps = 31/285 (10%)
Query: 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHV 266
V I + + P+ SLL S D + ++ N L
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV----------DLLQS 52
Query: 267 KGRTNEKSKDVTTLDWNG-EGTLLATGSYDGQARIW--STNGDLKCTLSKHKGPIFSLKW 323
+ + ++ + G+ G+ + + +
Sbjct: 53 LRYKHP----LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRIC 108
Query: 324 NKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSST------- 376
D L+ S D V D + + + T+S+
Sbjct: 109 KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN 168
Query: 377 DNMIYVCKIGENRPIKTFAGHQG----EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432
++ + ++ G + A S D +
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228
Query: 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477
++ SK TN + + +
Sbjct: 229 DYNS---SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG 270
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.5 bits (142), Expect = 2e-10
Identities = 9/68 (13%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 389 RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---EHSKEIYT 445
+ ++ + ++ +K P+ SLL S D + ++ DL + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 446 IRWSPTGS 453
+
Sbjct: 62 CNFIDNTD 69
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 3e-09
Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 8/145 (5%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
A S D + D + + + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR--FAFRCHRLNLKDTNL 250
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
+ V +++++ L T DG W+ +K +K + L
Sbjct: 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCL 309
Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHS 357
+ D T Q E ++
Sbjct: 310 ATSDDTFKTN----AAIDQTIELNA 330
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.6 bits (132), Expect = 4e-09
Identities = 27/186 (14%), Positives = 52/186 (27%), Gaps = 26/186 (13%)
Query: 282 WNGEGTLLATGSYDGQARIWSTNGDLK-----CTLSKHKGPIFSLKWNKKGDYLLTGSCD 336
+ + L G + Q + + K+ + S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215
Query: 337 KTAIVWDVKTEE---------WKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMI 380
V + + + T N++ F T+ +D +I
Sbjct: 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275
Query: 381 YVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHS 440
+ + IK FA E + VK + ++L + D T K + ++
Sbjct: 276 SCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA----AIDQTIELNA 330
Query: 441 KEIYTI 446
IY I
Sbjct: 331 SSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 28/263 (10%), Positives = 65/263 (24%), Gaps = 31/263 (11%)
Query: 213 GHTSEVCACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271
+ + C + + G+ + S N N+ + + K +
Sbjct: 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDD 113
Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL 331
+ D + + K + L+
Sbjct: 114 KLIAASWDGLIE---------VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164
Query: 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-----NNVSFATSSTDNMIYV---- 382
G + + + E SG + +A SS D + V
Sbjct: 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224
Query: 383 -----------CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK 431
+R VN +++ P L + D WN++ K
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284
Query: 432 YVHDLREHSKEIYTIRWSPTGSG 454
+ + + + E ++ + + +
Sbjct: 285 KIKNFAKFN-EDSVVKIACSDNI 306
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 12/111 (10%), Positives = 29/111 (26%), Gaps = 21/111 (18%)
Query: 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRT 270
V + +SP L + D W + K +
Sbjct: 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK------------------KIKN 288
Query: 271 NEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSL 321
K + + + +L + D + + + T+ + I+ +
Sbjct: 289 FAKFNEDSVVKIACSDNILCLATSDDTFKTNAA---IDQTIELNASSIYII 336
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 65.3 bits (157), Expect = 2e-12
Identities = 41/251 (16%), Positives = 65/251 (25%), Gaps = 6/251 (2%)
Query: 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK 264
+D I H+ + SP+G ASG RIW T +
Sbjct: 48 LTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG---P 104
Query: 265 HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWN 324
+ +SK + + E G + T K +
Sbjct: 105 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164
Query: 325 KKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCK 384
D + E K P + + +
Sbjct: 165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 224
Query: 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK--- 441
H G V + W P G+ +AS S D T KIWN+ K + ++
Sbjct: 225 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED 284
Query: 442 EIYTIRWSPTG 452
+ I W+
Sbjct: 285 QQLGIIWTKQA 295
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 14/112 (12%), Positives = 26/112 (23%), Gaps = 2/112 (1%)
Query: 374 SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIW--NMKQDK 431
+Y +G + + H + K P+G AS +IW
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93
Query: 432 YVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYF 483
+ S + I W + + F +
Sbjct: 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ 145
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.1 bits (115), Expect = 5e-07
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 281 DWNGEGTLLATGSYDGQARIWST-NGDLKCTLSKHKG-PIFSLKWNKKGDYLLTGSCDKT 338
W+ +GT +A+ S D +IW+ ++ T+ L L++ S +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304
Query: 339 AIVWD 343
+
Sbjct: 305 INFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQG-E 400
V ++ + + A++S D I + + + KT E
Sbjct: 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE 283
Query: 401 VNCVKWDPTGSLLASCSDDVTAKIWNM 427
+ T L S S + N
Sbjct: 284 DQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 4/133 (3%)
Query: 277 VTTLDWNGEGTLLATGSYDGQARIWS-TNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC 335
L G + + + ++H K + G Y +G
Sbjct: 20 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 336 DKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKT 393
+WD + SGP D+ W + + + + +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 394 FAGHQGEVNCVKW 406
G+ +
Sbjct: 139 NGNLTGQARAMNS 151
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 398 QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
+G + P G + C+ + + EHS + + SP+G
Sbjct: 17 RGTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG 70
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.4 bits (108), Expect = 3e-06
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
H+ V WSP G+ +AS S D T +IW +A V K + T +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK-------------VEKTIPVGTRIE 283
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIW 301
+ + W + L + S +G
Sbjct: 284 DQ-QLGIIWTKQ--ALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 38/255 (14%), Positives = 66/255 (25%), Gaps = 26/255 (10%)
Query: 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277
+PAG + +G S + T + +++
Sbjct: 20 AVVLGNTPAGDKIQYCNGTSV-YTVPVGSLT-------------DTEIYTEHSHQ----T 61
Query: 278 TTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGS 334
T + G A+G G RIW T + GP+ + W+ + +
Sbjct: 62 TVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVG 121
Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPI--- 391
+ + S P
Sbjct: 122 EGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF 181
Query: 392 -KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
TF H V+ V+++P GSL AS D T ++N + E
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGS 240
Query: 451 TGSGTNNPNQQLILA 465
T +P+ I +
Sbjct: 241 VFGLTWSPDGTKIAS 255
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 64.2 bits (154), Expect = 6e-12
Identities = 39/275 (14%), Positives = 75/275 (27%), Gaps = 31/275 (11%)
Query: 210 ILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL--VLKHVK 267
+ GH + A + S G L S + W I+ G SN + ++ + K
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATG------------------------SYDGQARIWST 303
G S D G+ + + + + +
Sbjct: 67 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
+G L + +L +K+ + + + + T
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENR---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420
N + + + N ++ H +V CV W P LA+ S D
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246
Query: 421 TAKIWNMK--QDKYVHDLREHSKEIYTIRWSPTGS 453
+ +WNM D + H+ +
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 281
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.8 bits (145), Expect = 8e-11
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 4/148 (2%)
Query: 305 GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQF-EFHSGPTLDV 363
G + H I +L + G L + + WD+ T + F + H+ +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 364 DWRNNVSFATSSTDNMIYVCKI---GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420
+ T S D+ + V G + + + G + +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 421 TAKIWNMKQDKYVHDLREHSKEIYTIRW 448
A + K + + +
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQ 149
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 2e-06
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 2/87 (2%)
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI--GENRPIKTFAGHQG 399
+ + + +NV AT S DN + V + + PI H
Sbjct: 210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 269
Query: 400 EVNCVKWDPTGSLLASCSDDVTAKIWN 426
+ + S D K WN
Sbjct: 270 SSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.4 bits (100), Expect = 3e-05
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 290 ATGSYDGQARIWSTN-GDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDV 344
ATGS D +W+ N + K + S+ W +++ D W+V
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 4e-04
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 244
+ I H + + S DS + W +
Sbjct: 261 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.8 bits (88), Expect = 0.001
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 219 CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVT 278
+WSP LA+GS D++ +W + + + + V
Sbjct: 228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPS--------------DHPIIIKGAHAMSSVN 273
Query: 279 TLDWNGEGTLLATGSYDGQARIWS 302
++ W T + + D + W+
Sbjct: 274 SVIWL-NETTIVSAGQDSNIKFWN 296
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.1 bits (151), Expect = 1e-11
Identities = 35/270 (12%), Positives = 70/270 (25%), Gaps = 28/270 (10%)
Query: 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADG------------TSNGGAQN 255
+ + GH + A +P L SGS D W+ + S +
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS 61
Query: 256 GPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHK 315
LK +E N +G + D + S GD+ ++ +
Sbjct: 62 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 121
Query: 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-----------LDVD 364
L + + + P+ D
Sbjct: 122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD 181
Query: 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424
+ + + I + E + + L+A+ S D I
Sbjct: 182 VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241
Query: 425 WNMKQD-KYVHDLREHSKEIYTIRWSPTGS 453
+++K+ K + L H + + W +
Sbjct: 242 YSVKRPMKIIKALNAHKDGVNNLLWETPST 271
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 4e-10
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368
++S + I + K S + W +T + + + +
Sbjct: 168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 227
Query: 369 VSFATSSTDNMIYVCKIGEN-RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
AT S D I++ + + IK H+ VN + W+ + L S D K WN
Sbjct: 228 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.3 bits (136), Expect = 9e-10
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 9/98 (9%)
Query: 386 GENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYT 445
G + +KT +GH + + +P L S S D W+ ++HS I +
Sbjct: 1 GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVS 51
Query: 446 IRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYF 483
+ S ++ + I +
Sbjct: 52 LDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASAN 89
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (109), Expect = 3e-06
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 200 SFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTI 244
S + P + L H V W + L S D+ + W +
Sbjct: 243 SVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (108), Expect = 3e-06
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 16/131 (12%)
Query: 304 NGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDV 363
+ ++ T+S H I +L N L++GS D + W + + HS + +
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSL 52
Query: 364 DWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAK 423
D +++ S D+ + V I ++ + + G +DD
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHE-------FGSQPKVASANNDGFTAVLTNDDDLLI 105
Query: 424 IWNMKQDKYVH 434
+ + D
Sbjct: 106 LQSFTGDIIKS 116
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 2e-05
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 293 SYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT-EEWKQ 351
S + + W+ +S + + + D + TGS D ++ VK + +
Sbjct: 193 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK 252
Query: 352 QFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKI 385
H ++ W + +S D I +
Sbjct: 253 ALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (97), Expect = 8e-05
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 17/89 (19%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
+E A L+A+GS D+ I+++ A N H
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA--------H-------- 257
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWS 302
V L W TL + D + W+
Sbjct: 258 KDGVNNLLWETPSTL-VSSGADACIKRWN 285
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 55.1 bits (131), Expect = 6e-09
Identities = 23/285 (8%), Positives = 56/285 (19%), Gaps = 53/285 (18%)
Query: 209 TILEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVK 267
+ + +P + + + A
Sbjct: 33 SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS----------- 81
Query: 268 GRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL-----SKHKGPIFSLK 322
E + + + + +G + Q +
Sbjct: 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF 141
Query: 323 WNKKGDYLLTGSCDKTAI-------VWDVKTEEWKQQFEFHSGP---------------- 359
+ YL+ + D + DVKT ++ +
Sbjct: 142 PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201
Query: 360 ----------TLDVDWRNNVSFATSSTDNMIYVCKIGENRPI-KTFAGHQGEVNCVKWDP 408
T+ + AT+ + + + FA P
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261
Query: 409 TGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453
+ +++KQ K + Y + + G
Sbjct: 262 KDPNQIYGVLN-RLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGD 304
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.6 bits (114), Expect = 8e-07
Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 17/147 (11%)
Query: 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK 273
+ + A+ + G K +
Sbjct: 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG----------------KTHTQEFADL 250
Query: 274 SKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG 333
++ T + + G + A+ L + + ++KKGD L G
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLG 309
Query: 334 SCDKTAIVWDVKTEEWKQQFEFHSGPT 360
V++ T E + + G
Sbjct: 310 GTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 18/180 (10%), Positives = 44/180 (24%), Gaps = 17/180 (9%)
Query: 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP---TLDVDWRNNVSFA 372
GP +Y++ + V DV ++ + T + N ++
Sbjct: 1 GPALK----AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56
Query: 373 TSSTDNMIYVCKIGENRPIK------TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
++ IY + + + P G + + + +
Sbjct: 57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSIYFKYFGTT 486
++ + + P Q ++ LY +K T
Sbjct: 117 YVVKPPRLEVFSTA----DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKT 172
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 19/276 (6%), Positives = 56/276 (20%), Gaps = 60/276 (21%)
Query: 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281
A + + + + +A T V K +
Sbjct: 3 ALKAGHEYMIVTNYPNNLHVVDVASDT-------------VYKSCVMPDKFGPGTA-MMA 48
Query: 282 WNGEGTLLATGSYDGQARIWSTNG-------DLKCTLSKHKGPIFSLKWNKKGDYLLTGS 334
+ T ++ G + +L + ++S + G +
Sbjct: 49 PDNR-TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107
Query: 335 CDKTAIVWDVKTEEWKQQFEFHSGPTLD-----VDWRNNVSFATSSTDNMIY-------V 382
+ + + + + V ++ D +Y
Sbjct: 108 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYK 167
Query: 383 CKIGENRPIKTFAGHQG-------------------------EVNCVKWDPTGSLLASCS 417
+ + ++ A+
Sbjct: 168 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 227
Query: 418 DDVTAKIWNMKQDK-YVHDLREHSKEIYTIRWSPTG 452
++K K + + + ++ +T SP
Sbjct: 228 LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD 263
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 23/267 (8%), Positives = 62/267 (23%), Gaps = 27/267 (10%)
Query: 211 LEGHTSEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR 269
+ +P G A+ + + + G + G V
Sbjct: 29 IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88
Query: 270 TNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDY 329
+ K + + L + ++ + + I L W + G
Sbjct: 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK 148
Query: 330 LLTGSCDKTAIVWD---------------------VKTEEWKQQFEFHSGPTLDVDWRNN 368
L D + + W Q T R +
Sbjct: 149 LYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208
Query: 369 V-SFATSSTDNMIYVCKIGENRPIKT-FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426
+ ++ + + +P + + + + ++
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVL--ESFD 266
Query: 427 MKQDKYVHDLREHSKEIYTIRWSPTGS 453
++++ + + Y++ S GS
Sbjct: 267 LEKNASIKRV-PLPHSYYSVNVSTDGS 292
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 15/190 (7%), Positives = 39/190 (20%), Gaps = 21/190 (11%)
Query: 288 LLATGSYDGQARIW--STNGDLK-CTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWD 343
+ + + + K T++ G T + ++ + D
Sbjct: 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 344 VKTEEWKQQFEFHSGPT-----------------LDVDWRNNVSFATSSTDNMIYVCKIG 386
+ T E + + + + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122
Query: 387 ENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTI 446
E + ++ + W GS L D+ ++ E Y
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182
Query: 447 RWSPTGSGTN 456
+
Sbjct: 183 PDVLAVWNQH 192
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 12/153 (7%), Positives = 28/153 (18%), Gaps = 1/153 (0%)
Query: 213 GHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE 272
++ A + I L + R
Sbjct: 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237
Query: 273 KSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLT 332
+ + +S+ + G +
Sbjct: 238 IMDVFYF-STAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296
Query: 333 GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDW 365
G +D +T E K Q + ++ +
Sbjct: 297 GGALGDLAAYDAETLEKKGQVDLPGNASMSLAS 329
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 16/162 (9%), Positives = 39/162 (24%), Gaps = 12/162 (7%)
Query: 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGP----TLDVDWRNNVSFATSSTDNMIYVC 383
DY+L + +V D + + V +++AT + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 384 KIGENRPIKTFAGHQGE-----VNCVKWDPTGSLLASCSDDVTAKIWN---MKQDKYVHD 435
+ + E + P G LA V ++ + ++D
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 436 LREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477
S+ + + + +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEA 163
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 17/199 (8%), Positives = 46/199 (23%), Gaps = 27/199 (13%)
Query: 259 NVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD---LKCTLSKHK 315
+ H + E + ++ + L +Y G+ + +
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238
Query: 316 GPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSS 375
+ W G + + + + +
Sbjct: 239 EAERADGWRPGGWQQVAYHRA---------------------LDRIYLLVDQRDEWRHKT 277
Query: 376 TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWNMKQDKYV 433
+ V + F E++ + L A + D T I + + + +
Sbjct: 278 ASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336
Query: 434 HDLREHSKEIYTIRWSPTG 452
+ + I + G
Sbjct: 337 RSVNQLGHGPQVITTADMG 355
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 8e-06
Identities = 23/270 (8%), Positives = 51/270 (18%), Gaps = 50/270 (18%)
Query: 222 AWSPAGSLLA----------SGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271
+ GS +A G ++ ++
Sbjct: 53 VVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA----------DIELPDAPRF 102
Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL 331
+G L + + + + K P + D
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162
Query: 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYV-- 382
D + TE + D N+ ++ + I+
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222
Query: 383 CKIGENRPIKTFAGHQGEVNCVKWD--------------------PTGSLLASCSDDVTA 422
G+ + + W +
Sbjct: 223 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV 282
Query: 423 KIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452
+ + K + + E EI +I S
Sbjct: 283 VVLDAKTGERLAKF-EMGHEIDSINVSQDE 311
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.8 bits (128), Expect = 2e-08
Identities = 18/267 (6%), Positives = 46/267 (17%), Gaps = 48/267 (17%)
Query: 222 AWSPAG----------SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTN 271
+G + A G ++ P+ + L +
Sbjct: 71 VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFSV 122
Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL 330
+ + LL A S
Sbjct: 123 GPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA---ATH 178
Query: 331 LTGSCDKTAIVWDVKTEEWK------QQFEFHSGPTLDVDW-RNNVSFATSSTDNMIYVC 383
GSC + D+ Q + + + ++ +
Sbjct: 179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDI 238
Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR------ 437
G++ + G + + + + +
Sbjct: 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298
Query: 438 ------------EHSKEIYTIRWSPTG 452
+ + I + G
Sbjct: 299 VTASVGQTSGPISNGHDSDAIIAAQDG 325
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 16/174 (9%), Positives = 40/174 (22%), Gaps = 6/174 (3%)
Query: 192 IATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNG 251
A+ A+ A + G L+ + + A T
Sbjct: 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKA 247
Query: 252 GAQNGPLNVLVLKHVKGRTNE--KSKDVTTLDWNGEGTLLATGSYDGQARIWST-NGDLK 308
K K+ + + + + G
Sbjct: 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307
Query: 309 CTLSKHKGPIFSLKWNKKGDYLL--TGSCDKTAIVWDVKTEEWKQQFEFHSGPT 360
+S + ++ + G + + ++D +++ + E GP
Sbjct: 308 GPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.6 bits (117), Expect = 5e-07
Identities = 26/212 (12%), Positives = 60/212 (28%), Gaps = 15/212 (7%)
Query: 279 TLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK 337
D + T GQ + + + + + + G YLL D
Sbjct: 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDA 83
Query: 338 TAIVWDVKTEEWKQQFEFHSGP-------TLDVDWRNNVSFATSSTDNMIYVCKIGENRP 390
+ D+ +E + E G + + + + A + + P
Sbjct: 84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143
Query: 391 IKTFAGHQGEVNCVKWDPTGSL-LASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR-- 447
+ + V+ + P + S + I N+K+ V + + T+
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203
Query: 448 ---WSPTGSGTNNPNQQLILARLIPYFLYWIC 476
G ++ ++ + A + I
Sbjct: 204 GAAPFLADGGWDSSHRYFMTAANNSNKVAVID 235
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 47.9 bits (113), Expect = 2e-06
Identities = 26/172 (15%), Positives = 49/172 (28%), Gaps = 10/172 (5%)
Query: 272 EKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYL 330
E DW+ E T GQ + + ++K L + + G YL
Sbjct: 18 EDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYL 76
Query: 331 LTGSCDKTAIVWDVKTEEWKQQFE-------FHSGPTLDVDWRNNVSFATSSTDNMIYVC 383
D + D+ +E E + W + + A + +
Sbjct: 77 FVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136
Query: 384 KIGENRPIKTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKYVH 434
P K + + ++ P + A S I N+K+ +
Sbjct: 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 188
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 2e-04
Identities = 18/246 (7%), Positives = 53/246 (21%), Gaps = 39/246 (15%)
Query: 229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288
+ + DG++ + + V + G
Sbjct: 34 FSVTLRDAGQIALI---DGSTYE----------IKTVLDTG-----YAVHISRLSASGRY 75
Query: 289 LATGSYDGQARIWSTNGDLKC------TLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIV 341
L DG+ + S+ + S + Y + ++
Sbjct: 76 LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVI 135
Query: 342 WDVKTEEWKQQFEFHSGPTLDVDW-------------RNNVSFATSSTDNMIYVCKIGEN 388
D +T E K+ + ++ I + +
Sbjct: 136 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
Query: 389 RPIKTFAGHQGEV-NCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIR 447
+KT + D + + ++ + ++ + + + +
Sbjct: 196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 255
Query: 448 WSPTGS 453
Sbjct: 256 RGANFV 261
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 43.3 bits (100), Expect = 4e-05
Identities = 30/270 (11%), Positives = 62/270 (22%), Gaps = 40/270 (14%)
Query: 216 SEVCACAWSPAGS-LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVL----------- 263
S SP G+ + + + + I A G V
Sbjct: 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVT 91
Query: 264 ---------------KHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK 308
KS L +G+ + + I + +
Sbjct: 92 NMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI 151
Query: 309 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368
T+S + P + + V D T + + P+
Sbjct: 152 NTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG 211
Query: 369 VSFATSSTDNMIYVCKI---GENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKI 424
++ D + G N+ + + P G + + S T +
Sbjct: 212 TKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSV 270
Query: 425 WNMKQDKYVHDLREHSKEIYTIRWSPTGSG 454
+ + + + +P SG
Sbjct: 271 IDTATNTITATM--------AVGKNPYASG 292
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.2 bits (84), Expect = 0.003
Identities = 20/168 (11%), Positives = 41/168 (24%), Gaps = 9/168 (5%)
Query: 332 TGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVDWRNNVSFATSSTDNMIYVCKIGENRP 390
S V DV + + S P + + ++ N + +
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSI-------- 58
Query: 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSP 450
I T + P G ++ V + SP
Sbjct: 59 IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP 118
Query: 451 TGSGTNNPNQQLILARLIPYFLYWICSIYFKYFGTTERANLPLHLACS 498
G + ++L + + I ++ T P +A +
Sbjct: 119 LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT 166
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 502 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.84 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.8 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.8 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.78 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.73 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.68 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.68 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.64 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.59 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.52 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.4 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.34 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.27 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.24 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.19 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.16 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.12 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.12 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.08 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.07 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.02 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.97 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.92 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.87 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.72 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.69 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.63 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.59 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.58 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.58 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.4 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.36 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.28 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.2 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.14 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.05 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.51 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.1 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.02 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.78 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.24 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.06 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.02 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.94 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.62 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.39 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.26 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.05 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.92 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 94.88 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.53 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 93.64 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.83 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.83 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 92.57 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 92.26 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.28 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.11 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 91.0 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.38 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.64 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 88.82 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 84.26 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 83.61 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5e-38 Score=295.64 Aligned_cols=262 Identities=21% Similarity=0.362 Sum_probs=230.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEee---------------------
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKH--------------------- 265 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--------------------- 265 (502)
...+|+||+++|++++|+|++++||||+.||+|+|||+.+++....+..+...+..+..
T Consensus 9 ~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 88 (317)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence 34679999999999999999999999999999999999988766554433222211110
Q ss_pred ----ecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEE
Q 010754 266 ----VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAI 340 (502)
Q Consensus 266 ----~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~ 340 (502)
.......+...+.++.|+++++.+++++.|+.+++||+. +.....+..|...+.+++|+|++++|++++.|+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~ 168 (317)
T d1vyhc1 89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 168 (317)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence 111223567789999999999999999999999999976 466778889999999999999999999999999999
Q ss_pred EEEcCCCceEEEEeeccCCeEEEEecCC---------------------CEEEEEeCCCeEEEEEcCCCcceEEEecCCC
Q 010754 341 VWDVKTEEWKQQFEFHSGPTLDVDWRNN---------------------VSFATSSTDNMIYVCKIGENRPIKTFAGHQG 399 (502)
Q Consensus 341 ~wd~~~~~~~~~~~~~~~~v~~v~~~~~---------------------~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~ 399 (502)
+|++.++.....+..+...+..+.|.+. ..+++++.|+.|++|++.+++++.++.+|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~ 248 (317)
T d1vyhc1 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248 (317)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence 9999999999999999999999988643 3478999999999999999999999999999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 400 ~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
.|++++|+|++++|++|+.||.|+|||+.+++++..+.+|..+|++++|+|+|. .|++++.|+.+++|.
T Consensus 249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~-------~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP-------YVVTGSVDQTVKVWE 317 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSS-------CEEEEETTSEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-------EEEEEeCCCeEEEeC
Confidence 999999999999999999999999999999999999999999999999999998 788899999999994
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.6e-37 Score=291.00 Aligned_cols=246 Identities=21% Similarity=0.373 Sum_probs=214.2
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+..++|+||.+.|++++|+|++++||||+.||+|+|||+.+++.. . ....|...|++++|+|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~-------------~----~~~~~~~~v~~v~~~~~ 108 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV-------------H----AIPLRSSWVMTCAYAPS 108 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-------------E----EEECSCSCEEEEEECTT
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeE-------------E----EEecccccEEeeEeecc
Confidence 356789999999999999999999999999999999999886532 1 12345778999999999
Q ss_pred CCEEEEEECCCeEEEEECCCc-----eEEE-----------------------------------------ecCccCCeE
Q 010754 286 GTLLATGSYDGQARIWSTNGD-----LKCT-----------------------------------------LSKHKGPIF 319 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~-----~~~~-----------------------------------------~~~~~~~v~ 319 (502)
++++++|+.|+.+++|+.... .... ...+...+.
T Consensus 109 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (340)
T d1tbga_ 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEe
Confidence 999999999999999985321 1111 112445577
Q ss_pred EEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEe--c
Q 010754 320 SLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA--G 396 (502)
Q Consensus 320 ~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~--~ 396 (502)
...+.+.+.++++++.|+.|++||+++++++..+..|...|.+++|+|+ ..|++++.|+.|++|+++....+..+. .
T Consensus 189 ~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~ 268 (340)
T d1tbga_ 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred eeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccccccc
Confidence 8888888999999999999999999999999999999999999999875 468899999999999999998877664 4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 397 HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 397 h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+...|++++|+|++++|++|+.||.|+|||+.+++++..+.+|..+|++++|+|+|. .+++++.|+.+++|+
T Consensus 269 ~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~-------~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM-------AVATGSWDSFLKIWN 340 (340)
T ss_dssp CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-------CEEEEETTSCEEEEC
T ss_pred ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-------EEEEEccCCEEEEeC
Confidence 567799999999999999999999999999999999999999999999999999998 788889999999995
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2e-36 Score=286.09 Aligned_cols=247 Identities=22% Similarity=0.354 Sum_probs=211.7
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
...+.+.+|.+.|++++|+|+|++||+|+.||+|+||++.+.... .......|...|.+++|+|+
T Consensus 49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~---------------~~~~~~~~~~~v~~v~~s~d 113 (311)
T d1nr0a1 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI---------------LKTTIPVFSGPVKDISWDSE 113 (311)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC---------------EEEEEECSSSCEEEEEECTT
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc---------------cccccccccCcccccccccc
Confidence 456788999999999999999999999999999999999876531 01112345678999999999
Q ss_pred CCEEEEEECC--CeEEEEECC-CceEEEecCccCCeEEEEEecCCCE-EEEEecCCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 286 GTLLATGSYD--GQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 286 g~~l~s~~~d--g~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
+++|++++.+ ..++||+.+ +.....+..|...|.+++|+|++++ |++|+.|+.|++||+++++....+..|..+|.
T Consensus 114 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~ 193 (311)
T d1nr0a1 114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193 (311)
T ss_dssp SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccccccccccc
Confidence 9999999864 569999977 4556678889999999999999875 78899999999999999999999999999999
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEe-------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 010754 362 DVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFA-------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV 433 (502)
Q Consensus 362 ~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~-------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~ 433 (502)
++.|+|+ ..+++++.|+.|++||..++..+..+. +|.+.|++++|+|++++|++|+.||+|+|||+++++++
T Consensus 194 ~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~ 273 (311)
T d1nr0a1 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273 (311)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 9999876 457889999999999999988776653 58889999999999999999999999999999999999
Q ss_pred EEeccCCC---cEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 434 HDLREHSK---EIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 434 ~~~~~h~~---~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.+..|.. .+.++.|+++ .+++++.|+.+++|+.
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~---------~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 274 KTIPVGTRIEDQQLGIIWTKQ---------ALVSISANGFINFVNP 310 (311)
T ss_dssp EEEECCSSGGGCEEEEEECSS---------CEEEEETTCCEEEEET
T ss_pred EEEECCCCccceEEEEEecCC---------EEEEEECCCEEEEEeC
Confidence 99876543 4556666554 5799999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=284.24 Aligned_cols=247 Identities=16% Similarity=0.264 Sum_probs=203.8
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
++.+ +|...|+|++|+|+|++||+|+ ||.|+|||+.+....... .......|...|++++|+|+|+
T Consensus 45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~------------~~~~~~~h~~~I~~v~~s~dg~ 110 (337)
T d1gxra_ 45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV------------SQLDCLNRDNYIRSCKLLPDGC 110 (337)
T ss_dssp EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS------------EEEECSCTTSBEEEEEECTTSS
T ss_pred EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCccccee------------EEeeecCCCCcEEEEEEcCCCC
Confidence 4444 8999999999999999999997 899999999876432110 0112235677899999999999
Q ss_pred EEEEEECCCeEEEEECCC---ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 288 LLATGSYDGQARIWSTNG---DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
+|++|+.||.|++||+.. .....+..|...|.+++|+|++.++++++.|+.|++||+.++++......|...+.+++
T Consensus 111 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~ 190 (337)
T d1gxra_ 111 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999763 34566778999999999999999999999999999999999988888777887888887
Q ss_pred ecCC-CEEEEEeCCCeEEEEEcCCCcceE----------------------------------------EEecCCCcEEE
Q 010754 365 WRNN-VSFATSSTDNMIYVCKIGENRPIK----------------------------------------TFAGHQGEVNC 403 (502)
Q Consensus 365 ~~~~-~~~~~~~~d~~i~i~d~~~~~~~~----------------------------------------~~~~h~~~i~~ 403 (502)
|+++ ..+++++.|+.|++||+++++.+. ....|...|++
T Consensus 191 ~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 270 (337)
T d1gxra_ 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS 270 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEE
T ss_pred ccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccce
Confidence 7554 456666677777777766554332 22367788999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 404 VKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 404 l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++|+|++++|++|+.||.|++||+.+++++..+. |..+|++++|+|+|+ .|++++.|+.+++|..
T Consensus 271 v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~-------~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDK-------YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSC-------EEEEEETTSCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCC-------EEEEEeCCCeEEEEEE
Confidence 9999999999999999999999999999987765 788999999999998 7788888999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.8e-34 Score=279.74 Aligned_cols=240 Identities=16% Similarity=0.206 Sum_probs=202.2
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
.++|+|++|+|+|++||+|+.|+.|+||++.+++.. . .....+|...|++++|+|++++|++|+.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-----------~----~~~l~gH~~~V~~l~fsp~~~~l~s~s~ 71 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-----------Q----VHELKEHNGQVTGVDWAPDSNRIVTCGT 71 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-----------E----EEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-----------E----EEEecCCCCCEEEEEECCCCCEEEEEEC
Confidence 478999999999999999999999999998765421 1 1223467889999999999999999999
Q ss_pred CCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE----EEeeccCCeEEEEecC
Q 010754 295 DGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ----QFEFHSGPTLDVDWRN 367 (502)
Q Consensus 295 dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~v~~~~ 367 (502)
|+.|+|||+... ....+..|...|.+++|+|++++|++++.|++|++|++....... ....|...|.++.|+|
T Consensus 72 D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p 151 (371)
T d1k8kc_ 72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151 (371)
T ss_dssp TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred CCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc
Confidence 999999998643 234566789999999999999999999999999999987665332 2334778899999987
Q ss_pred CC-EEEEEeCCCeEEEEEcCCC------------------cceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 368 NV-SFATSSTDNMIYVCKIGEN------------------RPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 368 ~~-~~~~~~~d~~i~i~d~~~~------------------~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
++ .|++++.|+.|++|+.... ..+....+|...|.+++|+|+|++|++++.||.|++||+.
T Consensus 152 ~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~ 231 (371)
T d1k8kc_ 152 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231 (371)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeee
Confidence 64 6888999999999998643 2455667889999999999999999999999999999999
Q ss_pred CCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 429 QDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 429 ~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+++.+..+..|..+|.+++|+|+|. +++++.|+.+.+|.+.
T Consensus 232 ~~~~~~~~~~~~~~v~s~~fs~d~~--------~la~g~d~~~~~~~~~ 272 (371)
T d1k8kc_ 232 KKMAVATLASETLPLLAVTFITESS--------LVAAGHDCFPVLFTYD 272 (371)
T ss_dssp GTTEEEEEECSSCCEEEEEEEETTE--------EEEEETTSSCEEEEEE
T ss_pred cccceeeeecccccceeeeecCCCC--------EEEEEcCCceEEEEee
Confidence 9999999999999999999999987 4555557878888654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-34 Score=269.93 Aligned_cols=238 Identities=21% Similarity=0.332 Sum_probs=208.3
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
+.+.+.+++++|+|+.|+.++. +.|.+|++.+.... ....+|...|++++|+|+|++|++|+
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~~-~~v~i~~~~~~~~~-----------------~~~~~H~~~v~~~~~sp~g~~latg~ 77 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDT-----------------EIYTEHSHQTTVAKTSPSGYYCASGD 77 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCC-----------------EEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCeEEEEEcCCCCEEEEEeC-CEEEEEECCCCcee-----------------EEEcCCCCCEEEEEEeCCCCeEeccc
Confidence 3455678899999999999864 67999999876532 12245778999999999999999999
Q ss_pred CCCeEEEEECCCc---eEEEecCccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeEEEEecCC
Q 010754 294 YDGQARIWSTNGD---LKCTLSKHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368 (502)
Q Consensus 294 ~dg~i~iwd~~~~---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~ 368 (502)
.||.|+|||+... ....+..|..+|.+++|+|++++|++++. ++.+++|++.+++....+..|...|.+++|+++
T Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~ 157 (311)
T d1nr0a1 78 VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPS 157 (311)
T ss_dssp TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSS
T ss_pred cCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999997643 34567889999999999999999999886 456999999999999999999999999999875
Q ss_pred C--EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-------cC
Q 010754 369 V--SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-------EH 439 (502)
Q Consensus 369 ~--~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-------~h 439 (502)
+ .+++|+.|+.|++||+++++....+.+|...|+++.|+|++++|++|+.||.|++||+.++..+..+. +|
T Consensus 158 ~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h 237 (311)
T d1nr0a1 158 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237 (311)
T ss_dssp SSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred ceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence 4 47889999999999999999999999999999999999999999999999999999999988877654 58
Q ss_pred CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 440 SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 440 ~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..+|++++|+|+|. .|++++.|+.+++|+.
T Consensus 238 ~~~V~~~~~s~~~~-------~l~tgs~Dg~v~iwd~ 267 (311)
T d1nr0a1 238 SGSVFGLTWSPDGT-------KIASASADKTIKIWNV 267 (311)
T ss_dssp SSCEEEEEECTTSS-------EEEEEETTSEEEEEET
T ss_pred cccccccccCCCCC-------EEEEEeCCCeEEEEEC
Confidence 88999999999998 7888888999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.3e-34 Score=275.74 Aligned_cols=264 Identities=22% Similarity=0.336 Sum_probs=202.8
Q ss_pred eccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEe-eecCccccCCCCeEEEEECCCCCEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLK-HVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
..+|++.|+||+|+|+|++||+|+ |++|+||++.+++....+........... ........+...|++++|+|+|++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 347999999999999999999986 89999999998775443322211110000 0112233567789999999999999
Q ss_pred EEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee-------------
Q 010754 290 ATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF------------- 355 (502)
Q Consensus 290 ~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------- 355 (502)
++|+.||.|++|+.. +.......+|...|.++.|++++..+++++.++.+++||+++.........
T Consensus 137 ~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 216 (388)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred eecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence 999999999999976 566777888999999999999999999999999999999987654332211
Q ss_pred ------------------------------------ccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCc---------
Q 010754 356 ------------------------------------HSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENR--------- 389 (502)
Q Consensus 356 ------------------------------------~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~--------- 389 (502)
|...|.++.|+++ ..+++++.|+.|++||+.++.
T Consensus 217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 296 (388)
T d1erja_ 217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296 (388)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence 1234677888765 468888999999999987653
Q ss_pred ---ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCC-CccEEEE
Q 010754 390 ---PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNP-NQQLILA 465 (502)
Q Consensus 390 ---~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~-~~~l~la 465 (502)
.......|...|++++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|++... ..+ ...++++
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~--~spd~~~l~s~ 374 (388)
T d1erja_ 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS--LGPEYNVFATG 374 (388)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT--TCTTCEEEEEE
T ss_pred ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcc--cCCCCCEEEEE
Confidence 2345567889999999999999999999999999999999999999999999999998765432 111 2367778
Q ss_pred eecCceEEEEee
Q 010754 466 RLIPYFLYWICS 477 (502)
Q Consensus 466 s~~~~~~iw~~~ 477 (502)
+.|+.+++|...
T Consensus 375 s~Dg~I~iW~~~ 386 (388)
T d1erja_ 375 SGDCKARIWKYK 386 (388)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCEEEEEeee
Confidence 889999999753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.2e-33 Score=260.63 Aligned_cols=246 Identities=18% Similarity=0.283 Sum_probs=192.2
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..++++||.+.|++++|+|++++|+||+.||+|++||+.+++.... ....|...|++++|+|+|
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~----------------~~~~h~~~v~~v~~~~~g 67 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV----------------FPDVHATMITGIKTTSKG 67 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC----------------SSCSCSSCEEEEEECTTS
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE----------------EcCCCCCcEEEEEeeccc
Confidence 4578999999999999999999999999999999999988763221 123456778888888888
Q ss_pred CEEEEEECCCeEEEEECCCce--------------E--EE-------------------------ecCccCCeEEEEEec
Q 010754 287 TLLATGSYDGQARIWSTNGDL--------------K--CT-------------------------LSKHKGPIFSLKWNK 325 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~--------------~--~~-------------------------~~~~~~~v~~l~~~~ 325 (502)
++ ++++.|+.+++|+..+.. . .. .......+.+++|+|
T Consensus 68 ~~-~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~ 146 (299)
T d1nr0a2 68 DL-FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 146 (299)
T ss_dssp CE-EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred ee-ecccceeeEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 64 456678888888743210 0 00 001234578899999
Q ss_pred CCCEEEEEecCCeEEEEEcCCCceEE-EEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcce---EEEecCCCc
Q 010754 326 KGDYLLTGSCDKTAIVWDVKTEEWKQ-QFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPI---KTFAGHQGE 400 (502)
Q Consensus 326 ~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~---~~~~~h~~~ 400 (502)
++++|++|+.|+.|++||+++++... ....|...|.+++|+++ ..+++++.|+.|++||+.++..+ ..+.+|...
T Consensus 147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~ 226 (299)
T d1nr0a2 147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226 (299)
T ss_dssp TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999998887654 34568889999999875 56888999999999999877543 456778999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEeccC-CCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 401 VNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYV--HDLREH-SKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 401 i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~--~~~~~h-~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
|++++|+|++++|++|+.||.|+|||++++... .....| ...|..+.|.+ +. .+++++.|+.+++|+..
T Consensus 227 v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-------~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ET-------TIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TT-------EEEEEETTSCEEEEECC
T ss_pred cccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-CC-------EEEEEeCCCEEEEEecc
Confidence 999999999999999999999999999876543 233333 45677776654 44 68888889999999853
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.6e-32 Score=264.48 Aligned_cols=251 Identities=18% Similarity=0.229 Sum_probs=201.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+..|++|.++|.+++|+|++++|++|+.|++|+|||+.++... .......|...|++++|+|++
T Consensus 43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~---------------~~~~~~~~~~~v~~i~~~p~~ 107 (371)
T d1k8kc_ 43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK---------------PTLVILRINRAARCVRWAPNE 107 (371)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE---------------EEEECCCCSSCEEEEEECTTS
T ss_pred EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc---------------ccccccccccccccccccccc
Confidence 46778999999999999999999999999999999999765421 111123456789999999999
Q ss_pred CEEEEEECCCeEEEEECCCc-----eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCC--------------
Q 010754 287 TLLATGSYDGQARIWSTNGD-----LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTE-------------- 347 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~-------------- 347 (502)
+.|++|+.|+.|++|+.+.. .......|...|.+++|+|++++|++|+.|++|++||+...
T Consensus 108 ~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~ 187 (371)
T d1k8kc_ 108 KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187 (371)
T ss_dssp SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSC
T ss_pred ccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccccccccccccc
Confidence 99999999999999986532 23445678999999999999999999999999999998543
Q ss_pred ----ceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 348 ----EWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 348 ----~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
........|...+.+++|+++ ..+++++.|+.|++||+.++..+..+..|..+|++++|+|++++|++|+ |+.+
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~ 266 (371)
T d1k8kc_ 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFP 266 (371)
T ss_dssp CCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEET-TSSC
T ss_pred ccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEc-CCce
Confidence 345555678889999999875 5688999999999999999999999999999999999999998888765 6666
Q ss_pred EEEEC--CCCeeEE---------------------------------------EeccCCCcEEEEEEccCCCCCCCCCcc
Q 010754 423 KIWNM--KQDKYVH---------------------------------------DLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 423 ~iwd~--~~~~~~~---------------------------------------~~~~h~~~i~~v~~sp~g~~~~~~~~~ 461 (502)
++|.. ..+.... ....|.+.|++++++|.+. .....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~---~~~~~ 343 (371)
T d1k8kc_ 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK---AKCSQ 343 (371)
T ss_dssp EEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTT---TSCSE
T ss_pred EEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCC---cceEE
Confidence 66553 2222110 0013888999999999765 22234
Q ss_pred EEEEeecCceEEEEe
Q 010754 462 LILARLIPYFLYWIC 476 (502)
Q Consensus 462 l~las~~~~~~iw~~ 476 (502)
+++++.|+.+++|+.
T Consensus 344 ~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 344 FCTTGMDGGMSIWDV 358 (371)
T ss_dssp EEEEETTSEEEEEEH
T ss_pred EEEEcCCCeEEEEeC
Confidence 678888999999975
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-31 Score=251.90 Aligned_cols=255 Identities=17% Similarity=0.209 Sum_probs=203.3
Q ss_pred CceEEeccCC-CceEEEEEcC--CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEE
Q 010754 206 SDVTILEGHT-SEVCACAWSP--AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDW 282 (502)
Q Consensus 206 ~~~~~l~~H~-~~V~~~~~~p--~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 282 (502)
..+..+.+|. ..|++++|+| ++.+|++|+.||+|+|||+..+...... ..........+...|.+++|
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~---------~~~~~~~~~~~~~~v~~v~~ 123 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV---------EVNVKSEFQVLAGPISDISW 123 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE---------EEEEEEEEECCSSCEEEEEE
T ss_pred cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee---------ecccccccccccCcEEEEEE
Confidence 3456778874 6899999998 5689999999999999999765532211 11112223456778999999
Q ss_pred CCCCCEEEEEEC--CCeEEEEECC-CceEEEecCccCCeEEEEEecCCCE-EEEEecCCeEEEEEcCCCceEEEEee---
Q 010754 283 NGEGTLLATGSY--DGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDY-LLTGSCDKTAIVWDVKTEEWKQQFEF--- 355 (502)
Q Consensus 283 s~~g~~l~s~~~--dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~--- 355 (502)
++++++|++++. ++.+++|+.+ +.....+.+|...|.+++|+|++.+ +++++.|+.|++||+.+.+....+..
T Consensus 124 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~ 203 (325)
T d1pgua1 124 DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK 203 (325)
T ss_dssp CTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC
T ss_pred CCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccC
Confidence 999999988865 5789999976 5667788899999999999998865 67899999999999988877666543
Q ss_pred ccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEc---CCCCEEEEEeCCCcEEEEECCCC
Q 010754 356 HSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD---PTGSLLASCSDDVTAKIWNMKQD 430 (502)
Q Consensus 356 ~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~s---p~g~~las~s~dg~i~iwd~~~~ 430 (502)
|...|.+++|+|+ ..+++++.|+.|++||+++++.+.++.+|...+.++.|+ |+|++|++++.|+.|+|||++++
T Consensus 204 ~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~ 283 (325)
T d1pgua1 204 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS 283 (325)
T ss_dssp TTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT
T ss_pred CCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC
Confidence 5667999999874 568889999999999999999999999998877666655 68999999999999999999999
Q ss_pred eeEEEeccCCCc--EEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 431 KYVHDLREHSKE--IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 431 ~~~~~~~~h~~~--i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+++..+..|... +..++|.+.+. ..+++++.|+.+++|.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 284 KCVQKWTLDKQQLGNQQVGVVATGN------GRIISLSLDGTLNFYE 324 (325)
T ss_dssp EEEEEEECCTTCGGGCEEEEEEEET------TEEEEEETTSCEEEEE
T ss_pred CEEEEEEecCCcccCeEEEEEECCC------CEEEEEECCCEEEEEE
Confidence 999888765543 34444443322 2578888899999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-30 Score=246.44 Aligned_cols=240 Identities=22% Similarity=0.388 Sum_probs=188.4
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+..++|+||++.|.+ +++++|++||||+.||+|+|||+.+++... ...+|...|.+++|+++
T Consensus 7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~-----------------~~~~h~~~V~~v~~~~~ 68 (342)
T d2ovrb2 7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR-----------------TLVGHTGGVWSSQMRDN 68 (342)
T ss_dssp CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE-----------------ECCCCSSCEEEEEEETT
T ss_pred CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE-----------------EEeCCCCCEEEEEeCCC
Confidence 356789999999865 466789999999999999999998876321 22456778999999874
Q ss_pred CCEEEEEECCCeEEEEECCCc-----------------------------------------------------------
Q 010754 286 GTLLATGSYDGQARIWSTNGD----------------------------------------------------------- 306 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~----------------------------------------------------------- 306 (502)
+|++|+.|+.+++|+....
T Consensus 69 --~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (342)
T d2ovrb2 69 --IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 146 (342)
T ss_dssp --EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC
T ss_pred --ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc
Confidence 8889998888888874321
Q ss_pred ----------------------eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 307 ----------------------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 307 ----------------------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
....+..|... ...+.+++.+|++++.||.|++||++.++.+..+..|...+.++.
T Consensus 147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~ 224 (342)
T d2ovrb2 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224 (342)
T ss_dssp SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC--EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred cceeeeecCCCeEEEeecccceeeEEEcCcccc--cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe
Confidence 01111123322 334455788999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcceEEEec---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec----
Q 010754 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR---- 437 (502)
Q Consensus 365 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~---- 437 (502)
+.+ ..+++++.|+.|++||+...+....+.+ |...+.++.++ ++++++|+.||+|+|||++++++++.+.
T Consensus 225 ~~~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~ 301 (342)
T d2ovrb2 225 LKD-NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 301 (342)
T ss_dssp EET-TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT
T ss_pred cCC-CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccC
Confidence 876 4799999999999999999988887765 45567777665 5699999999999999999999988774
Q ss_pred -cCCCcEEEEEEccCCCCCCCCCccEEEEeecCc----eEEEEee
Q 010754 438 -EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPY----FLYWICS 477 (502)
Q Consensus 438 -~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~----~~iw~~~ 477 (502)
+|...|++++|+|+|. .+.+|+.||+ +.+|+++
T Consensus 302 ~~~~~~v~~v~~s~~~~-------~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 302 GGSGGVVWRIRASNTKL-------VCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp GGGTCEEEEEEECSSEE-------EEEEECSSSSSCCEEEEEECC
T ss_pred CCCCCCEEEEEECCCCC-------EEEEEeCCCCCeeEEEEEeCC
Confidence 5778899999999987 4555555564 4555543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.5e-30 Score=244.99 Aligned_cols=239 Identities=18% Similarity=0.288 Sum_probs=183.8
Q ss_pred eEEeccCCCce-EEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 208 VTILEGHTSEV-CACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 208 ~~~l~~H~~~V-~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
..+|+||.+.| +|++| ++++||||+.||+|+|||+.+++.+.. ..+|...|++++|+|+
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~-----------------l~~H~~~V~~l~~s~~- 64 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQ-----------------LSGHDGGVWALKYAHG- 64 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEE-----------------EECCSSCEEEEEEETT-
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEE-----------------EECCCCCEEEEEEcCC-
Confidence 56799999886 55554 688999999999999999988764321 2345667777777764
Q ss_pred CEEEEEECCCeEEEEECCCce-----------------------------------------------------------
Q 010754 287 TLLATGSYDGQARIWSTNGDL----------------------------------------------------------- 307 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~----------------------------------------------------------- 307 (502)
.+|++|+.||.|++|+.....
T Consensus 65 ~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence 466777777777776532110
Q ss_pred -------------------------------------------------EEEecCccCCeEEEEEecCCCEEEEEecCCe
Q 010754 308 -------------------------------------------------KCTLSKHKGPIFSLKWNKKGDYLLTGSCDKT 338 (502)
Q Consensus 308 -------------------------------------------------~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~ 338 (502)
......+...+.++.|+|++.++++++.|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 224 (355)
T d1nexb2 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224 (355)
T ss_dssp SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce
Confidence 0011123445677889999999999999999
Q ss_pred EEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEE-EEcCCCCEEEEEe
Q 010754 339 AIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCV-KWDPTGSLLASCS 417 (502)
Q Consensus 339 i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l-~~sp~g~~las~s 417 (502)
|++||++++..+..+..|...|.++.|++ ..+++++.||.|++||+.+... .+..|...+.++ .+++++++|++|+
T Consensus 225 i~i~d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~ 301 (355)
T d1nexb2 225 IRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGS 301 (355)
T ss_dssp EEEEETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSEEEEEETTTCCE--EEEEECTTCCCCCEEEECSSEEEEEE
T ss_pred EEeeecccccccccccccccccccccccc-ceeeeeecccccccccccccce--ecccccCCceEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999975 5799999999999999987764 455566666665 4677888777765
Q ss_pred CCCcEEEEECCCCeeEE-EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEeee
Q 010754 418 DDVTAKIWNMKQDKYVH-DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICSI 478 (502)
Q Consensus 418 ~dg~i~iwd~~~~~~~~-~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~~ 478 (502)
||.|+|||+++++++. .+.+|..+|++++|+|+. .++.++.|+.+.+|++++
T Consensus 302 -d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~--------~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 302 -ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--------LVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp -TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTE--------EEEEEESSSCEEEEEEEC
T ss_pred -CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCe--------EEEEEECCCcEEEEEEeC
Confidence 8899999999999885 466899999999999863 344556788899998763
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-28 Score=239.45 Aligned_cols=243 Identities=17% Similarity=0.232 Sum_probs=181.2
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCC---------------------------------
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQ--------------------------------- 254 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~--------------------------------- 254 (502)
....++|.+.|+++++++ ++|+|||.|++|+|||...........
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence 456789999999999874 689999999999999976543211000
Q ss_pred ---CCCceeEEEee------------ecCccccCCCCeEEEEECCC-----CCEEEEEECCCeEEEEECCCc--------
Q 010754 255 ---NGPLNVLVLKH------------VKGRTNEKSKDVTTLDWNGE-----GTLLATGSYDGQARIWSTNGD-------- 306 (502)
Q Consensus 255 ---~~~~~~~~~~~------------~~~~~~~~~~~v~~l~~s~~-----g~~l~s~~~dg~i~iwd~~~~-------- 306 (502)
.+.+.+..+.. .......+...+..++|.++ +.++++++.||.|++|++...
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence 00000000000 00011123345777888765 468899999999999996311
Q ss_pred -----------eEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe------eccCCeEEEEecCC-
Q 010754 307 -----------LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE------FHSGPTLDVDWRNN- 368 (502)
Q Consensus 307 -----------~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------~~~~~v~~v~~~~~- 368 (502)
.......+...+.+++|+|++ +|++|+.||+|++||+.+++.+..+. .|..+|.+++|+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence 011122345668999999987 89999999999999999998876554 57889999999876
Q ss_pred CEEEEEeCCC---eEEEEEcCCCcceEEEe-------------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 010754 369 VSFATSSTDN---MIYVCKIGENRPIKTFA-------------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 369 ~~~~~~~~d~---~i~i~d~~~~~~~~~~~-------------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
..|++|+.|+ .|++||+.+++.+..+. +|.+.|++|+|+|++++|+|||.|++|+|||+.++++
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 4578888776 58999999998877764 7999999999999999999999999999999999999
Q ss_pred EEEeccCCCcEE----EEEEccCCC
Q 010754 433 VHDLREHSKEIY----TIRWSPTGS 453 (502)
Q Consensus 433 ~~~~~~h~~~i~----~v~~sp~g~ 453 (502)
+..+++|...|. .++|+|+|.
T Consensus 324 ~~~l~gH~~~v~~~~~~~~~~~~~~ 348 (393)
T d1sq9a_ 324 ITTLNMHCDDIEIEEDILAVDEHGD 348 (393)
T ss_dssp EEEEECCGGGCSSGGGCCCBCTTSC
T ss_pred EEEECCcCCcccCCccEEEECCCCC
Confidence 999999976654 355666654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.2e-28 Score=228.32 Aligned_cols=234 Identities=21% Similarity=0.375 Sum_probs=192.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
+++...+|...|+|++| ++++||||+.||+|+|||+.+++.. ....+|...|++++| ++
T Consensus 7 ~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~-----------------~~l~~H~~~V~~v~~--~~ 65 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK-----------------RILTGHTGSVLCLQY--DE 65 (293)
T ss_dssp CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE-----------------EEECCCSSCEEEEEC--CS
T ss_pred EEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEE-----------------EEEecCCCCEeeeec--cc
Confidence 45667789999998765 7899999999999999999876532 122457788999987 56
Q ss_pred CEEEEEECCCeEEEEECCCce--------------------------------------------EEEecCccCCeEEEE
Q 010754 287 TLLATGSYDGQARIWSTNGDL--------------------------------------------KCTLSKHKGPIFSLK 322 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~~~--------------------------------------------~~~~~~~~~~v~~l~ 322 (502)
++|++|+.||.|++|++.... ...+..|...|..+.
T Consensus 66 ~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 145 (293)
T d1p22a2 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 145 (293)
T ss_dssp SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEE
T ss_pred ceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccce
Confidence 799999999999999864221 111233555666666
Q ss_pred EecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEE
Q 010754 323 WNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN 402 (502)
Q Consensus 323 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~ 402 (502)
+. ...+++++.|+.|++||+++++.+..+..+...+..+.+.+ ..+++++.|+.|++||+++...+..+.+|...+.
T Consensus 146 ~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 222 (293)
T d1p22a2 146 FD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222 (293)
T ss_dssp EE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeeeeecccceeee
Confidence 54 46788999999999999999999999999999999888865 4689999999999999999999999999988887
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCC---------CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEE
Q 010754 403 CVKWDPTGSLLASCSDDVTAKIWNMKQ---------DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLY 473 (502)
Q Consensus 403 ~l~~sp~g~~las~s~dg~i~iwd~~~---------~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~i 473 (502)
. +++++.+|++|+.||.|++||+.+ ..++..+.+|.++|++++|++ . .|++++.|+.+++
T Consensus 223 ~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~--~-------~l~s~s~Dg~i~i 291 (293)
T d1p22a2 223 C--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--F-------QIVSSSHDDTILI 291 (293)
T ss_dssp E--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS--S-------CEEECCSSSEEEE
T ss_pred e--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC--C-------EEEEEecCCEEEE
Confidence 5 456788999999999999999743 346788899999999999954 3 6888999999999
Q ss_pred EE
Q 010754 474 WI 475 (502)
Q Consensus 474 w~ 475 (502)
|+
T Consensus 292 WD 293 (293)
T d1p22a2 292 WD 293 (293)
T ss_dssp EC
T ss_pred eC
Confidence 95
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.4e-29 Score=239.76 Aligned_cols=247 Identities=14% Similarity=0.077 Sum_probs=173.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC-
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE- 285 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~- 285 (502)
.+.++++|.+.|++|+|+|++++||+|+.||+|+|||+.+.... ..+. ....|...|++++|+|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~----------~~~~----~~~~h~~~V~~v~f~~~~ 68 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------VDLL----QSLRYKHPLLCCNFIDNT 68 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------EEEE----EEEECSSCEEEEEEEESS
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc----------eEEE----EecCCCCCEEEEEEeCCC
Confidence 46778999999999999999999999999999999999765421 0111 11246788999999986
Q ss_pred CCEEEEEECCCeEEEEECCCc-eEEEec-CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee----cc--
Q 010754 286 GTLLATGSYDGQARIWSTNGD-LKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF----HS-- 357 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~~-~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~-- 357 (502)
+.+|++|+.||.|++|+.... ...... .+........+.++...+++++.++++++||++++........ +.
T Consensus 69 ~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T d1yfqa_ 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred CCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccc
Confidence 458999999999999997643 233333 3334445666677889999999999999999865432222111 00
Q ss_pred CCeEEEEe-cCCCEEEEEeCCCeEEEEEcCCCcce---------------------------------------------
Q 010754 358 GPTLDVDW-RNNVSFATSSTDNMIYVCKIGENRPI--------------------------------------------- 391 (502)
Q Consensus 358 ~~v~~v~~-~~~~~~~~~~~d~~i~i~d~~~~~~~--------------------------------------------- 391 (502)
.....+.+ .....+++++.|+.|++|++......
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~ 228 (342)
T d1yfqa_ 149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred ceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence 01111111 22333444555555555554332110
Q ss_pred -------EE---------EecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCC
Q 010754 392 -------KT---------FAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGT 455 (502)
Q Consensus 392 -------~~---------~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~ 455 (502)
.. ..+|...|++|+|+|++++||||+.||.|+|||+.+++++..+..+ .++..++|+|+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~-- 305 (342)
T d1yfqa_ 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDN-- 305 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSS--
T ss_pred eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCC--
Confidence 00 1235557899999999999999999999999999999999888643 3455678888887
Q ss_pred CCCCccEEEEeecCceEEEE
Q 010754 456 NNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 456 ~~~~~~l~las~~~~~~iw~ 475 (502)
.+++|++++.+++|.
T Consensus 306 -----~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 306 -----ILCLATSDDTFKTNA 320 (342)
T ss_dssp -----EEEEEEECTHHHHCS
T ss_pred -----EEEEEEcCCcEEEee
Confidence 788889998877774
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.6e-29 Score=235.29 Aligned_cols=233 Identities=17% Similarity=0.253 Sum_probs=180.5
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+.+++|+||.++|++++|+| |+||+.||+|++||+.++. ..|...|.+++++++
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----------------------~~h~~~V~~~~~~~~ 57 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----------------------QDHSNLIVSLDNSKA 57 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----------------------CCCCSCEEEEECCST
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----------------------CCCCCCEEEEEecCC
Confidence 35789999999999999997 9999999999999986532 134556777777654
Q ss_pred CCEEEEEECCCeEEEEECCC-----------------------------------ceEEEecCccCCeEEEEEecCCCEE
Q 010754 286 GTLLATGSYDGQARIWSTNG-----------------------------------DLKCTLSKHKGPIFSLKWNKKGDYL 330 (502)
Q Consensus 286 g~~l~s~~~dg~i~iwd~~~-----------------------------------~~~~~~~~~~~~v~~l~~~~~~~~l 330 (502)
+ .+++++.|++|++|+... .....+ .+.. ...++++++..+
T Consensus 58 ~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~ 133 (287)
T d1pgua2 58 Q-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV-RLNS--PGSAVSLSQNYV 133 (287)
T ss_dssp T-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE-ECSS--CEEEEEECSSEE
T ss_pred C-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeec-cccc--eeeeeeccCcce
Confidence 3 456777777777775321 111111 1122 234567778888
Q ss_pred EEEecCC-eEEEEEcCCCceEEEEe-eccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceE-EEecCCCcEEEEEE
Q 010754 331 LTGSCDK-TAIVWDVKTEEWKQQFE-FHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKW 406 (502)
Q Consensus 331 ~s~~~d~-~i~~wd~~~~~~~~~~~-~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~-~~~~h~~~i~~l~~ 406 (502)
++++.++ .|++|++........+. .+...+.+++|++++ .|++++.||.|++||+.++.... .+.+|...|++++|
T Consensus 134 ~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~ 213 (287)
T d1pgua2 134 AVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISW 213 (287)
T ss_dssp EEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEE
T ss_pred eeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeee
Confidence 8887765 79999987666555443 367789999998875 58899999999999999887654 46789999999999
Q ss_pred cCC----------CCEEEEEeCCCcEEEEECCC-CeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 407 DPT----------GSLLASCSDDVTAKIWNMKQ-DKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 407 sp~----------g~~las~s~dg~i~iwd~~~-~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+|. +.+|++|+.|++|+|||+++ .+++..+.+|...|++++|+|++. +++++.|+.+++|.
T Consensus 214 ~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~--------l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--------LVSSGADACIKRWN 285 (287)
T ss_dssp CCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE--------EEEEETTSCEEEEE
T ss_pred cccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE--------EEEEECCCeEEEEE
Confidence 874 46899999999999999976 667778889999999999999864 78999999999997
Q ss_pred e
Q 010754 476 C 476 (502)
Q Consensus 476 ~ 476 (502)
.
T Consensus 286 i 286 (287)
T d1pgua2 286 V 286 (287)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.3e-28 Score=231.92 Aligned_cols=238 Identities=14% Similarity=0.171 Sum_probs=192.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCC-cEEEEecCCCCccCCCCCCCceeEEEeeecCccccC-CCCeEEEEECC--CCCEEEEE
Q 010754 217 EVCACAWSPAGSLLASGSGDS-TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEK-SKDVTTLDWNG--EGTLLATG 292 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~s~--~g~~l~s~ 292 (502)
.+++++|+|+++.|+.++.+. .|+.|+........ .....+| ...|++++|+| +|.+|++|
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~---------------~~~~~gh~~~~v~~v~fsP~~~g~~lasg 83 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPP---------------VVQFTGHGSSVVTTVKFSPIKGSQYLCSG 83 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCS---------------EEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccc---------------eEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence 457889999999999987654 35566644332110 0111233 46799999998 67899999
Q ss_pred ECCCeEEEEECCC---------ceEEEecCccCCeEEEEEecCCCEEEEEec--CCeEEEEEcCCCceEEEEeeccCCeE
Q 010754 293 SYDGQARIWSTNG---------DLKCTLSKHKGPIFSLKWNKKGDYLLTGSC--DKTAIVWDVKTEEWKQQFEFHSGPTL 361 (502)
Q Consensus 293 ~~dg~i~iwd~~~---------~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~v~ 361 (502)
+.||.|+|||+.. .....+..|.++|.+++|+++++++++++. ++.+++|+..+++.+..+..|...+.
T Consensus 84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 163 (325)
T d1pgua1 84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN 163 (325)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE
T ss_pred eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc
Confidence 9999999999642 122345678899999999999999987764 67899999999999999999999999
Q ss_pred EEEecCCC--EEEEEeCCCeEEEEEcCCCcceEEEe---cCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 362 DVDWRNNV--SFATSSTDNMIYVCKIGENRPIKTFA---GHQGEVNCVKWDPT-GSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 362 ~v~~~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~~---~h~~~i~~l~~sp~-g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
++.|++.+ .+++++.|+.|++||....+....+. +|...|++++|+|+ +.+|++|+.||.|++||+++++++..
T Consensus 164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~ 243 (325)
T d1pgua1 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243 (325)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccc
Confidence 99998764 47789999999999998877665553 46678999999996 68999999999999999999999999
Q ss_pred eccCCCcEEEEEEc---cCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 436 LREHSKEIYTIRWS---PTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 436 ~~~h~~~i~~v~~s---p~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
+.+|..++.++.|+ |+|. .+++++.|+.+++|+.
T Consensus 244 l~~~~~~v~~~~~s~~~~dg~-------~l~s~s~D~~i~iwd~ 280 (325)
T d1pgua1 244 IEDDQEPVQGGIFALSWLDSQ-------KFATVGADATIRVWDV 280 (325)
T ss_dssp CCBTTBCCCSCEEEEEESSSS-------EEEEEETTSEEEEEET
T ss_pred ccccccccccceeeeeccCCC-------EEEEEeCCCeEEEEEC
Confidence 99998887766666 5666 7889999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.1e-27 Score=227.33 Aligned_cols=243 Identities=21% Similarity=0.302 Sum_probs=195.8
Q ss_pred ccCCCCcccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCC----CC
Q 010754 184 EKGPEPMDIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA----QN 255 (502)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~----~~ 255 (502)
...|....+++++.+..+.++ ...+..+.+|.+.|.+++|+|++.++++|+.|+.+++|+.......... ..
T Consensus 62 ~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 141 (340)
T d1tbga_ 62 HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECC
T ss_pred EECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccc
Confidence 334555567777777776664 3446788999999999999999999999999999999998765322110 00
Q ss_pred CCceeEEEe------------------------eecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEE
Q 010754 256 GPLNVLVLK------------------------HVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCT 310 (502)
Q Consensus 256 ~~~~~~~~~------------------------~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~ 310 (502)
+........ ........+...+....+.+.+.++++|+.|+.|++||++ +.....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~ 221 (340)
T d1tbga_ 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp CSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEE
Confidence 000000000 0001112345678899999999999999999999999976 566778
Q ss_pred ecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee--ccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCC
Q 010754 311 LSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGE 387 (502)
Q Consensus 311 ~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~ 387 (502)
+..|..+|.+++|+|++++|++|+.|+.|++||++.......+.. +...+..+.|++++ .+++|+.||.|++||+.+
T Consensus 222 ~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 301 (340)
T d1tbga_ 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred EeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCC
Confidence 899999999999999999999999999999999999888776643 55679999998764 588899999999999999
Q ss_pred CcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 388 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 388 ~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
++++.++.+|.+.|++++|+|++++|+||+.||+|+|||
T Consensus 302 ~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 302 ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6e-28 Score=230.22 Aligned_cols=221 Identities=18% Similarity=0.258 Sum_probs=186.3
Q ss_pred CCcccccCCCCceeeeC---C---CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeE
Q 010754 188 EPMDIATTSASESFEIP---N---SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVL 261 (502)
Q Consensus 188 ~~~~~~~~~~~~~~~~~---~---~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~ 261 (502)
....+++.+.+..+.+. . .....+.+|...|.+++|+|++.++++++.|+.|++|++.+++..
T Consensus 108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~----------- 176 (337)
T d1gxra_ 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV----------- 176 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------
T ss_pred CCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------
Confidence 33344555455544432 1 234667899999999999999999999999999999999876421
Q ss_pred EEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEE
Q 010754 262 VLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIV 341 (502)
Q Consensus 262 ~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~ 341 (502)
.....|...|++++|++++..+++|+.||.|++||++.........|...|.+++|+|++++|++++.|+.|++
T Consensus 177 ------~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i 250 (337)
T d1gxra_ 177 ------RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250 (337)
T ss_dssp ------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ------ccccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccc
Confidence 12234567899999999999999999999999999886655555678899999999999999999999999999
Q ss_pred EEcCCCceEEEEeeccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCC
Q 010754 342 WDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDV 420 (502)
Q Consensus 342 wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg 420 (502)
||++++... ....|...|.++.|+++ ..|++++.|+.|++||+.+++.+..+. |...|++++|+|++++|++|+.||
T Consensus 251 ~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 251 LHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp EETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTS
T ss_pred ccccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCC
Confidence 999988765 45678899999999876 468899999999999999999988776 788999999999999999999999
Q ss_pred cEEEEEC
Q 010754 421 TAKIWNM 427 (502)
Q Consensus 421 ~i~iwd~ 427 (502)
+|+|||+
T Consensus 329 ~I~vWdl 335 (337)
T d1gxra_ 329 KATVYEV 335 (337)
T ss_dssp CEEEEEE
T ss_pred eEEEEEE
Confidence 9999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=1.3e-27 Score=223.72 Aligned_cols=203 Identities=25% Similarity=0.408 Sum_probs=182.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
....+.+|...+.++.|+|++..+++++.|+.+++|++.++.... ....|...+.+++|++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~ 155 (317)
T d1vyhc1 93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-----------------TFTGHREWVRMVRPNQDG 155 (317)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-----------------EEECCSSCEEEEEECTTS
T ss_pred cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeee-----------------EEccCCCcceeeecccCC
Confidence 455678899999999999999999999999999999998765311 123456789999999999
Q ss_pred CEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCC--------------------CEEEEEecCCeEEEEEcC
Q 010754 287 TLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKG--------------------DYLLTGSCDKTAIVWDVK 345 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~--------------------~~l~s~~~d~~i~~wd~~ 345 (502)
++|++|+.||.|++|+.. +.....+..|...+.++.|+|++ .++++++.|+.|++||++
T Consensus 156 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~ 235 (317)
T d1vyhc1 156 TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235 (317)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC
Confidence 999999999999999976 46677788899999999998753 478999999999999999
Q ss_pred CCceEEEEeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEE
Q 010754 346 TEEWKQQFEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKI 424 (502)
Q Consensus 346 ~~~~~~~~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~i 424 (502)
+++++..+..|...|.+++|++++ .|++++.||.|++||+.+++++.++.+|.+.|++++|+|++++|++|+.||+|+|
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~i 315 (317)
T d1vyhc1 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315 (317)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 999999999999999999998765 5888999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q 010754 425 WN 426 (502)
Q Consensus 425 wd 426 (502)
||
T Consensus 316 Wd 317 (317)
T d1vyhc1 316 WE 317 (317)
T ss_dssp EC
T ss_pred eC
Confidence 97
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.4e-25 Score=217.44 Aligned_cols=225 Identities=16% Similarity=0.284 Sum_probs=182.7
Q ss_pred EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEE
Q 010754 231 ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKC 309 (502)
Q Consensus 231 ~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~ 309 (502)
+.+..++.+.+|+....+.. .. . ......|...|+||+|+|+|++|++|+ |+.|+|||+.. ....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~--------~~-~----l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~ 97 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREI--------DV-E----LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA 97 (388)
T ss_dssp SEEECSSCEEEECTTSCCCE--------EE-E----EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE
T ss_pred cccCCCCcEEEeCCCCCcce--------ee-e----eEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEe
Confidence 35566778888886543311 01 1 111235788999999999999999987 89999999763 3333
Q ss_pred Ee------------------cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CE
Q 010754 310 TL------------------SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VS 370 (502)
Q Consensus 310 ~~------------------~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~ 370 (502)
.+ ..|...|.+++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.|.++ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 177 (388)
T d1erja_ 98 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177 (388)
T ss_dssp EECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred eecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccc
Confidence 33 246677999999999999999999999999999999999999999999999999765 56
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEec-------cCCCcE
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLR-------EHSKEI 443 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~-------~h~~~i 443 (502)
+++++.++.+++||..+.........+...+..+.+.+++++|++|+.||.|++||..++..+..+. +|..+|
T Consensus 178 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v 257 (388)
T d1erja_ 178 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257 (388)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred ccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCE
Confidence 8899999999999999998888777665555545455588999999999999999999988776553 688899
Q ss_pred EEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 444 YTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 444 ~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
++++|+|+|. .+++++.|+.+++|+.
T Consensus 258 ~~l~~s~~~~-------~l~s~~~d~~i~iwd~ 283 (388)
T d1erja_ 258 YSVVFTRDGQ-------SVVSGSLDRSVKLWNL 283 (388)
T ss_dssp EEEEECTTSS-------EEEEEETTSEEEEEEC
T ss_pred EEEEECCCCC-------EEEEEECCCcEEEEec
Confidence 9999999998 7888888999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=6.2e-25 Score=205.05 Aligned_cols=200 Identities=19% Similarity=0.227 Sum_probs=160.1
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCC-ceEEEe-cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCC
Q 010754 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNG-DLKCTL-SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKT 346 (502)
Q Consensus 269 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~-~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~ 346 (502)
...+|...|++++|+|+|++|++|+.||.|++||+.. .....+ ..|...|.+++|+|++. +++++.|+.+++|+...
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~ 85 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGG 85 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSS
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEeccCC
Confidence 3467889999999999999999999999999999875 445554 46899999999999987 55667899999998743
Q ss_pred Cce-------------EEEEe---------------------------eccCCeEEEEecCCC-EEEEEeCCCeEEEEEc
Q 010754 347 EEW-------------KQQFE---------------------------FHSGPTLDVDWRNNV-SFATSSTDNMIYVCKI 385 (502)
Q Consensus 347 ~~~-------------~~~~~---------------------------~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~ 385 (502)
... ...+. .....+.+++|+++. .+++++.|+.|++||+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~ 165 (299)
T d1nr0a2 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 165 (299)
T ss_dssp SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 210 00000 012245667776654 5788999999999999
Q ss_pred CCCcceE-EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE---EeccCCCcEEEEEEccCCCCCCCCCcc
Q 010754 386 GENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVH---DLREHSKEIYTIRWSPTGSGTNNPNQQ 461 (502)
Q Consensus 386 ~~~~~~~-~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~---~~~~h~~~i~~v~~sp~g~~~~~~~~~ 461 (502)
.+++... ....|...|++++|+|++++|++++.||.|++||+.++..+. .+.+|..+|++++|+|+|. .
T Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-------~ 238 (299)
T d1nr0a2 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-------R 238 (299)
T ss_dssp ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-------E
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------c
Confidence 8876543 345689999999999999999999999999999998876553 4557899999999999998 7
Q ss_pred EEEEeecCceEEEEe
Q 010754 462 LILARLIPYFLYWIC 476 (502)
Q Consensus 462 l~las~~~~~~iw~~ 476 (502)
+++++.|+.+++|+.
T Consensus 239 l~sgs~dg~i~iwd~ 253 (299)
T d1nr0a2 239 LATGSLDNSVIVWNM 253 (299)
T ss_dssp EEEEETTSCEEEEET
T ss_pred eEEEcCCCEEEEEEC
Confidence 788888999999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=3.1e-24 Score=205.17 Aligned_cols=188 Identities=13% Similarity=0.075 Sum_probs=159.5
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC-
Q 010754 219 CACAWSP-AGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG- 296 (502)
Q Consensus 219 ~~~~~~p-~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg- 296 (502)
+.-.||| ||+++|+++. |.|++|++.++.... ..|...|.+++|+|||++|++++.+.
T Consensus 6 ~~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-------------------~~~~~~v~~~~~spDg~~l~~~~~~~g 65 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-------------------VPEPLRIRYVRRGGDTKVAFIHGTREG 65 (360)
T ss_dssp GEEEEEECGGGCEEEEET-TEEEEECTTSSBEEE-------------------CSCCSCEEEEEECSSSEEEEEEEETTE
T ss_pred hcccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-------------------ccCCCCEEEEEECCCCCEEEEEEcCCC
Confidence 4568999 9999999875 799999998764211 13567899999999999998877553
Q ss_pred -eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEE-EE
Q 010754 297 -QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFA-TS 374 (502)
Q Consensus 297 -~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~-~~ 374 (502)
.|++||.++.....+..|...|.+++|+|++++|++++.++.+++|++.+++....+..+...+.+++|++++..+ .+
T Consensus 66 ~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~ 145 (360)
T d1k32a3 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG 145 (360)
T ss_dssp EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence 7999999998888999999999999999999999999999999999999999999999999999999999876643 32
Q ss_pred ----------eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 375 ----------STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 375 ----------~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
..++.+++|++.+++... +..|...+..++|+|+|++|++++.++.+++|+.
T Consensus 146 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 146 FPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp EEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred ccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccc
Confidence 234568999998876654 4447778899999999999999999999999975
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.3e-23 Score=193.75 Aligned_cols=232 Identities=21% Similarity=0.307 Sum_probs=174.4
Q ss_pred ccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCcee------
Q 010754 191 DIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNV------ 260 (502)
Q Consensus 191 ~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~------ 260 (502)
.+++++.+..+.++ .+.++.+.+|.+.|.+++|+|+ +|++|+.|+++++|+.................
T Consensus 29 ~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (342)
T d2ovrb2 29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH 106 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecc
Confidence 35555556555553 3567889999999999999874 99999999999999987543211100000000
Q ss_pred ------------------------EE-------------------Ee---------e-----ecCccccCCCCeEEEEEC
Q 010754 261 ------------------------LV-------------------LK---------H-----VKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 261 ------------------------~~-------------------~~---------~-----~~~~~~~~~~~v~~l~~s 283 (502)
.. .. . .......|... ...++
T Consensus 107 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~ 184 (342)
T d2ovrb2 107 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR--VYSLQ 184 (342)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC--EEEEE
T ss_pred cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccc--ccccc
Confidence 00 00 0 00111123333 34445
Q ss_pred CCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee---ccCC
Q 010754 284 GEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF---HSGP 359 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~ 359 (502)
+++.++++|+.||.|++||+. +..+..+..|...+.++.+++ ++|++++.|+.|++||+...+....+.. |...
T Consensus 185 ~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 262 (342)
T d2ovrb2 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 262 (342)
T ss_dssp ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred CCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeec
Confidence 578899999999999999976 466778889999999888764 6999999999999999999888877765 4556
Q ss_pred eEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEe-----cCCCcEEEEEEcCCCCEEEEEeCCCc----EEEEECCC
Q 010754 360 TLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA-----GHQGEVNCVKWDPTGSLLASCSDDVT----AKIWNMKQ 429 (502)
Q Consensus 360 v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~h~~~i~~l~~sp~g~~las~s~dg~----i~iwd~~~ 429 (502)
+.++.+.+ ..+++++.||.|++||+++++.++.+. +|...|++++|+|++.+||+|+.||+ |++||+..
T Consensus 263 ~~~~~~~~-~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 263 VTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred eeecccCC-CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 77777765 578999999999999999999988874 57778999999999999999999986 99999863
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=8.3e-24 Score=196.11 Aligned_cols=231 Identities=17% Similarity=0.238 Sum_probs=170.1
Q ss_pred cccCCCCceeeeCCCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCC---CCCCc----------
Q 010754 192 IATTSASESFEIPNSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGA---QNGPL---------- 258 (502)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~---~~~~~---------- 258 (502)
+++++.+..+.++... ....+|...|.+++|++++ .+++++.|+++++|++...+..... ...+.
T Consensus 24 l~sgs~Dg~v~~Wd~~-~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (287)
T d1pgua2 24 LISGSYDGRIMEWSSS-SMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDD 101 (287)
T ss_dssp TEEEETTSCEEETTTT-EEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTS
T ss_pred EEEEeCCCeEEEEECC-CCCCCCCCCEEEEEecCCC-eEEEEeeccccccccccccccccceeeeeeccCCceEEEeecc
Confidence 6677777777777543 3568999999999998754 5799999999999998654321100 00000
Q ss_pred eeEEEeeec---CccccCCCCeEEEEECCCCCEEEEEECCC-eEEEEECCCceE-EE-ecCccCCeEEEEEecCCCEEEE
Q 010754 259 NVLVLKHVK---GRTNEKSKDVTTLDWNGEGTLLATGSYDG-QARIWSTNGDLK-CT-LSKHKGPIFSLKWNKKGDYLLT 332 (502)
Q Consensus 259 ~~~~~~~~~---~~~~~~~~~v~~l~~s~~g~~l~s~~~dg-~i~iwd~~~~~~-~~-~~~~~~~v~~l~~~~~~~~l~s 332 (502)
......... ........ ...++++++..+++++.++ .|++|++..... .. ...|..++++++|+|++.+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 179 (287)
T d1pgua2 102 DLLILQSFTGDIIKSVRLNS--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179 (287)
T ss_dssp EEEEEETTTCCEEEEEECSS--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred cceeeeccceeeeeeccccc--eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc
Confidence 000000000 00001112 2345667788888888875 799999864332 22 3457889999999999999999
Q ss_pred EecCCeEEEEEcCCCceEEE-EeeccCCeEEEEecCC-----------CEEEEEeCCCeEEEEEcCC-CcceEEEecCCC
Q 010754 333 GSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVDWRNN-----------VSFATSSTDNMIYVCKIGE-NRPIKTFAGHQG 399 (502)
Q Consensus 333 ~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~v~~~~~-----------~~~~~~~~d~~i~i~d~~~-~~~~~~~~~h~~ 399 (502)
|+.||.|++||+.++..... +..|...|.+++|+|. ..+++|+.|+.|++||+.. .+.+..+.+|..
T Consensus 180 g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~ 259 (287)
T d1pgua2 180 GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259 (287)
T ss_dssp EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTT
T ss_pred ccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCC
Confidence 99999999999998876553 5678999999999764 3589999999999999977 456777889999
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 400 EVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 400 ~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
.|++++|+|++ .|++++.||+|++|++
T Consensus 260 ~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 260 GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999999986 5889999999999985
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1e-22 Score=187.86 Aligned_cols=228 Identities=23% Similarity=0.361 Sum_probs=174.4
Q ss_pred cccccCCCCceeeeC----CCceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEE---
Q 010754 190 MDIATTSASESFEIP----NSDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLV--- 262 (502)
Q Consensus 190 ~~~~~~~~~~~~~~~----~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~--- 262 (502)
..+++++.+..+.++ .+.+++|++|.+.|++++| ++++|++|+.|++|++|++..+...............
T Consensus 26 ~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (293)
T d1p22a2 26 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 103 (293)
T ss_dssp SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccc
Confidence 346666666666654 3557899999999999987 5789999999999999999876433221111100000
Q ss_pred ---------------Eee--------ecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCe
Q 010754 263 ---------------LKH--------VKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPI 318 (502)
Q Consensus 263 ---------------~~~--------~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v 318 (502)
+.. .......|...|.++.+.+ ..+++++.|+.|++||.. +.....+.++...|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v 181 (293)
T d1p22a2 104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181 (293)
T ss_dssp CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEccccccc
Confidence 000 0111234556677776654 578899999999999986 46677888888888
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCC---------Cc
Q 010754 319 FSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGE---------NR 389 (502)
Q Consensus 319 ~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~---------~~ 389 (502)
..+.++ +.++++++.||+|++||+++...+..+..+...+..+.+ +...+++++.||.|++||+.. ..
T Consensus 182 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 258 (293)
T d1p22a2 182 ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258 (293)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTT
T ss_pred ccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccc-cceEEEEEcCCCEEEEEECCCCccccccCCce
Confidence 888776 568999999999999999999999999888888876654 456799999999999999753 24
Q ss_pred ceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 390 PIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 390 ~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
++..+.+|.+.|++++|+ +++|+|||.||+|+|||
T Consensus 259 ~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 259 CLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred eeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 578899999999999995 56899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=9.5e-23 Score=198.17 Aligned_cols=204 Identities=17% Similarity=0.222 Sum_probs=157.0
Q ss_pred cCCCceEEEEEcCC-----CCeEEEEeCCCcEEEEecCCCCccC-CCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 213 GHTSEVCACAWSPA-----GSLLASGSGDSTARIWTIADGTSNG-GAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 213 ~H~~~V~~~~~~p~-----~~~l~sgs~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+...+..++|.++ +.++++++.||++++|++....... ...........+.........+...+++++|+|++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg 196 (393)
T d1sq9a_ 117 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG 196 (393)
T ss_dssp GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred cCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC
Confidence 35567888888875 3589999999999999986432111 11111112223333334444556779999999998
Q ss_pred CEEEEEECCCeEEEEECCC-ceEE------EecCccCCeEEEEEecCCCEEEEEecCCe---EEEEEcCCCceEEEEe--
Q 010754 287 TLLATGSYDGQARIWSTNG-DLKC------TLSKHKGPIFSLKWNKKGDYLLTGSCDKT---AIVWDVKTEEWKQQFE-- 354 (502)
Q Consensus 287 ~~l~s~~~dg~i~iwd~~~-~~~~------~~~~~~~~v~~l~~~~~~~~l~s~~~d~~---i~~wd~~~~~~~~~~~-- 354 (502)
+|++|+.||.|+|||+.. +.+. .+.+|..+|.+++|+|+|++|++|+.|++ |++||+.+++.+..+.
T Consensus 197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~ 275 (393)
T d1sq9a_ 197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP 275 (393)
T ss_dssp -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence 899999999999999874 3332 34568999999999999999999999874 9999999998888764
Q ss_pred -----------eccCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEE----EEEEcCCCCEEEEEe
Q 010754 355 -----------FHSGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN----CVKWDPTGSLLASCS 417 (502)
Q Consensus 355 -----------~~~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~----~l~~sp~g~~las~s 417 (502)
+|...|++++|+|+ ..|++++.|++|++||+.+++++.++.+|.+.|. .++|+|++..+++++
T Consensus 276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp --------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred cccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 68899999999876 5689999999999999999999999999987765 477888887776543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.7e-22 Score=189.49 Aligned_cols=194 Identities=25% Similarity=0.379 Sum_probs=152.5
Q ss_pred ccCCCCe-EEEEECCCCCEEEEEECCCeEEEEECC-CceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc
Q 010754 271 NEKSKDV-TTLDWNGEGTLLATGSYDGQARIWSTN-GDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE 348 (502)
Q Consensus 271 ~~~~~~v-~~l~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~ 348 (502)
.+|...| +|++| ++++|++|+.||.|+|||+. ++.+..+.+|.++|.+++|+|+ .+|++|+.|++|++|++....
T Consensus 9 ~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~ 85 (355)
T d1nexb2 9 RGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC 85 (355)
T ss_dssp ECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE
T ss_pred CCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc
Confidence 4566664 66665 57899999999999999976 5778889999999999999985 689999999999999998876
Q ss_pred eEEEEeeccCCe--EEEEecC-----------------------------------------------------------
Q 010754 349 WKQQFEFHSGPT--LDVDWRN----------------------------------------------------------- 367 (502)
Q Consensus 349 ~~~~~~~~~~~v--~~v~~~~----------------------------------------------------------- 367 (502)
............ ....+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (355)
T d1nexb2 86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165 (355)
T ss_dssp EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE
T ss_pred cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc
Confidence 554433222211 1111111
Q ss_pred -----CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCc
Q 010754 368 -----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKE 442 (502)
Q Consensus 368 -----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~ 442 (502)
+..++++..|+.|++||+.+++.+..+.++...+.++.|+|++.++++++.||.|++||+.++.++..+.+|..+
T Consensus 166 ~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~ 245 (355)
T d1nexb2 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSC
T ss_pred ccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccccc
Confidence 233455556666666666666666667778888999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 443 IYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 443 i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|.+++|+++ .+++++.|+.+++|+.
T Consensus 246 v~~~~~~~~---------~l~~~~~dg~i~iwd~ 270 (355)
T d1nexb2 246 VGLLRLSDK---------FLVSAAADGSIRGWDA 270 (355)
T ss_dssp CCEEEECSS---------EEEEECTTSEEEEEET
T ss_pred ccccccccc---------eeeeeecccccccccc
Confidence 999999864 5788888899999963
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=4.3e-22 Score=190.07 Aligned_cols=214 Identities=6% Similarity=0.028 Sum_probs=162.3
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCC--cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEEC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDS--TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWN 283 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 283 (502)
..+..+ +|...|.+++|+|||++|++++.+. .|++||+.++... ....|...|.+++|+
T Consensus 34 ~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~------------------~~~~~~~~v~~~~~s 94 (360)
T d1k32a3 34 TYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE------------------KFEENLGNVFAMGVD 94 (360)
T ss_dssp SBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE------------------ECCCCCCSEEEEEEC
T ss_pred CcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE------------------EeeCCCceEEeeeec
Confidence 334444 7999999999999999988877653 7999999876521 123457789999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEe----------cCCeEEEEEcCCCceEEE
Q 010754 284 GEGTLLATGSYDGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGS----------CDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~ 352 (502)
|+|++|++++.++.+++|+..+ .....+..|...+.+++|+|+|++|+.++ .++.+++||+.+++...
T Consensus 95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~- 173 (360)
T d1k32a3 95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA- 173 (360)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-
T ss_pred ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-
Confidence 9999999999999999999875 55567778889999999999999998654 34569999998876543
Q ss_pred EeeccCCeEEEEecCCC-EEEEEeCCCeEEEEEc----------------------------------------------
Q 010754 353 FEFHSGPTLDVDWRNNV-SFATSSTDNMIYVCKI---------------------------------------------- 385 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~~-~~~~~~~d~~i~i~d~---------------------------------------------- 385 (502)
+..+...+..+.|++++ .+++++.++.+.+|+.
T Consensus 174 ~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 253 (360)
T d1k32a3 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253 (360)
T ss_dssp CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGG
T ss_pred ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccc
Confidence 33344455666665543 3555666666655553
Q ss_pred ----------------------------------------------------CCCcceEEEecCCCcEEEEEEcCCCCEE
Q 010754 386 ----------------------------------------------------GENRPIKTFAGHQGEVNCVKWDPTGSLL 413 (502)
Q Consensus 386 ----------------------------------------------------~~~~~~~~~~~h~~~i~~l~~sp~g~~l 413 (502)
.+++. ..|.+.|.+++|+|||++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~v~~~~~SpDG~~l 329 (360)
T d1k32a3 254 KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRKTV 329 (360)
T ss_dssp GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE----EEEEEEEEEEEECTTSCEE
T ss_pred cceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE----EEecCCcCEEEECCCCCEE
Confidence 22211 1233468899999999999
Q ss_pred EEEeCCCcEEEEECCCCeeEEEeccCCCcE
Q 010754 414 ASCSDDVTAKIWNMKQDKYVHDLREHSKEI 443 (502)
Q Consensus 414 as~s~dg~i~iwd~~~~~~~~~~~~h~~~i 443 (502)
++++.||.|++||+.+++...++..+..|+
T Consensus 330 ~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 330 MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred EEEECCCeEEEEECCCCCcceEEEeccccc
Confidence 999999999999999999888887776665
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=2.1e-21 Score=182.77 Aligned_cols=201 Identities=11% Similarity=0.065 Sum_probs=143.3
Q ss_pred ccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc----eEEEecCccCCeEEEEEecCC-CEEEEEecCCeEEEEE
Q 010754 269 RTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD----LKCTLSKHKGPIFSLKWNKKG-DYLLTGSCDKTAIVWD 343 (502)
Q Consensus 269 ~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~v~~l~~~~~~-~~l~s~~~d~~i~~wd 343 (502)
...+|...|++|+|+|++++||+|+.||+|+|||++.. .......|..+|.+++|+|++ .+|++|+.||.|++|+
T Consensus 6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~ 85 (342)
T d1yfqa_ 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence 34567888999999999999999999999999997532 233444799999999999865 5789999999999999
Q ss_pred cCCCceEEEEeeccCCe--EEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEe----cC--CCcEEEEEEcCCCCEEEE
Q 010754 344 VKTEEWKQQFEFHSGPT--LDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFA----GH--QGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v--~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~h--~~~i~~l~~sp~g~~las 415 (502)
+..+........+.... ..........+++++.++.+++||++......... .+ ......+.+.+.+..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (342)
T d1yfqa_ 86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV 165 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence 98887776665544433 33333567789999999999999986543322221 11 112334445555566666
Q ss_pred EeCCCcEEEEECCCCee-------------------------------------------------------EE------
Q 010754 416 CSDDVTAKIWNMKQDKY-------------------------------------------------------VH------ 434 (502)
Q Consensus 416 ~s~dg~i~iwd~~~~~~-------------------------------------------------------~~------ 434 (502)
++.||.|++||+..... ..
T Consensus 166 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T d1yfqa_ 166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred ecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence 66666666666532210 00
Q ss_pred EeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 435 DLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 435 ~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
....|...|++|+|+|++. .|++|+.|+.+++|+.
T Consensus 246 ~~~~~~~~v~~l~~sp~~~-------~lasg~~Dg~v~vWD~ 280 (342)
T d1yfqa_ 246 KDTNLAYPVNSIEFSPRHK-------FLYTAGSDGIISCWNL 280 (342)
T ss_dssp TCCSSCCCEEEEEECTTTC-------CEEEEETTSCEEEEET
T ss_pred CCCcccccceeEEecCCcc-------EEEEECCCCEEEEEEC
Confidence 0113555789999999998 7889999999999974
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=3.7e-20 Score=181.66 Aligned_cols=250 Identities=13% Similarity=0.105 Sum_probs=173.7
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+.+..+..|. .+..++|+|||++|++++.|++|++||+.+++... ...+. ....|...+.+++|+||
T Consensus 53 ~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~--------~~~i~----~~~~~~~~~~s~~~spD 119 (426)
T d1hzua2 53 KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK--------VAEIK----IGIEARSVESSKFKGYE 119 (426)
T ss_dssp SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--------EEEEE----CCSEEEEEEECCSTTCT
T ss_pred cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE--------EEEEe----CCCCCcceEEeeeecCC
Confidence 4467787774 58999999999999999999999999999876321 01111 11223344667788899
Q ss_pred CCEEEEE-ECCCeEEEEECCCce-EEE-----------------------------------------------------
Q 010754 286 GTLLATG-SYDGQARIWSTNGDL-KCT----------------------------------------------------- 310 (502)
Q Consensus 286 g~~l~s~-~~dg~i~iwd~~~~~-~~~----------------------------------------------------- 310 (502)
|++++++ ..++.+++||..... ...
T Consensus 120 G~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 199 (426)
T d1hzua2 120 DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 199 (426)
T ss_dssp TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCE
T ss_pred CCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccccee
Confidence 9987555 478999999865321 110
Q ss_pred --ecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEEEEeeccCC--eEEEEe-cC-CCEE--EEEeCCCeEE
Q 010754 311 --LSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFEFHSGP--TLDVDW-RN-NVSF--ATSSTDNMIY 381 (502)
Q Consensus 311 --~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~--v~~v~~-~~-~~~~--~~~~~d~~i~ 381 (502)
...+...+..+.|+|++++++++.. +..+.+|+..+++.+..+.....+ .....+ .+ .... +..+.++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 279 (426)
T d1hzua2 200 VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS 279 (426)
T ss_dssp EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred eEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEE
Confidence 0113334567888999888776654 567889999988887766543221 112222 22 2222 2334678888
Q ss_pred EEEcCCC-------cceEEEecCCCcEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCeeEEEe---------cc
Q 010754 382 VCKIGEN-------RPIKTFAGHQGEVNCVKWDPTGSLLAS-------CSDDVTAKIWNMKQDKYVHDL---------RE 438 (502)
Q Consensus 382 i~d~~~~-------~~~~~~~~h~~~i~~l~~sp~g~~las-------~s~dg~i~iwd~~~~~~~~~~---------~~ 438 (502)
+|+.... +....+.+|...+..++|+|++++|++ ++.|++|+|||+.++++..++ ..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~ 359 (426)
T d1hzua2 280 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 359 (426)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred EeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCC
Confidence 8886543 677889999999999999999999994 556889999999998876554 24
Q ss_pred CCCcEEEEEEccCCCCCCCCCccEEEEe-----ecCceEEEE
Q 010754 439 HSKEIYTIRWSPTGSGTNNPNQQLILAR-----LIPYFLYWI 475 (502)
Q Consensus 439 h~~~i~~v~~sp~g~~~~~~~~~l~las-----~~~~~~iw~ 475 (502)
|...|.+++|||||+ +++++. .++.+++|+
T Consensus 360 ~~~rv~~~~fSpDGk-------~i~vs~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 360 GAKRVVQPEYNKRGD-------EVWFSVWNGKNDSSALVVVD 394 (426)
T ss_dssp SCCCEEEEEECSSSS-------EEEEEECCCTTSCCEEEEEE
T ss_pred CCccEEEEEECCCCC-------EEEEEEecCCCCCCeEEEEE
Confidence 566799999999998 555432 356689996
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.84 E-value=2.7e-18 Score=159.01 Aligned_cols=233 Identities=13% Similarity=0.088 Sum_probs=175.8
Q ss_pred CceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE-E
Q 010754 216 SEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG-S 293 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~-~ 293 (502)
..+..++|+|+|++| ++++.++.|++||+.+++.+. .+.. ...+..++|++++..++++ .
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~-------------~~~~-----~~~~~~~~~~~~~~~~~~~~~ 93 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA-------------TVPA-----GSSPQGVAVSPDGKQVYVTNM 93 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE-------------EEEC-----SSSEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceee-------------eeec-----ccccccccccccccccccccc
Confidence 457899999999976 567788999999998875321 1111 2357899999999866655 4
Q ss_pred CCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC-EE
Q 010754 294 YDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV-SF 371 (502)
Q Consensus 294 ~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~-~~ 371 (502)
.++.+.+|+...........+...+.++.|+|++..++ ++..++.+.+|+..++.....+..+ ..+..+.+.++. .+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 172 (301)
T d1l0qa2 94 ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKV 172 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEE
T ss_pred ccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccce
Confidence 66799999988665554445556778999999998775 5556889999999999888877654 456777887654 44
Q ss_pred EEEe-CCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeEEEeccCCCcEEEEE
Q 010754 372 ATSS-TDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQDKYVHDLREHSKEIYTIR 447 (502)
Q Consensus 372 ~~~~-~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~---dg~i~iwd~~~~~~~~~~~~h~~~i~~v~ 447 (502)
++++ ..+.+.+|+.........+.. ...+..++|++++..++.++. ++.|++||+.+++++..+..+ ..+++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va 250 (301)
T d1l0qa2 173 YVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA 250 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred eeecccccccccccccceeeeecccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEE
Confidence 4444 456778888887777766664 456788999999998776543 468999999999999888744 4689999
Q ss_pred EccCCCCCCCCCccEEE-EeecCceEEEEe
Q 010754 448 WSPTGSGTNNPNQQLIL-ARLIPYFLYWIC 476 (502)
Q Consensus 448 ~sp~g~~~~~~~~~l~l-as~~~~~~iw~~ 476 (502)
|+|||+ ++++ ++.++.+++|+.
T Consensus 251 ~spdg~-------~l~va~~~~~~i~v~D~ 273 (301)
T d1l0qa2 251 VTPDGK-------KVYVALSFCNTVSVIDT 273 (301)
T ss_dssp ECTTSS-------EEEEEETTTTEEEEEET
T ss_pred EeCCCC-------EEEEEECCCCeEEEEEC
Confidence 999998 6644 445788999974
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=3.8e-18 Score=160.55 Aligned_cols=245 Identities=10% Similarity=0.070 Sum_probs=175.9
Q ss_pred eEEec--cCCCceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC
Q 010754 208 VTILE--GHTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG 284 (502)
Q Consensus 208 ~~~l~--~H~~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 284 (502)
+..+. .+...+.+++|+|||++| ++++.++.|.+||+.+++.+...... ....+...+..++|+|
T Consensus 24 ~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~------------~~~~~~~~~~~v~~s~ 91 (337)
T d1pbyb_ 24 DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS------------TPEERVKSLFGAALSP 91 (337)
T ss_dssp EEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC------------BTTEEEECTTCEEECT
T ss_pred EEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC------------CCcccccceeeEEEcC
Confidence 34444 344567899999999976 56778999999999987643211111 1111123456799999
Q ss_pred CCCEEEEEEC------------CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE
Q 010754 285 EGTLLATGSY------------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 285 ~g~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 352 (502)
++++++++.. ++.+.+||...........+...+.+++|+|+|+++++++. .+.+||..+++....
T Consensus 92 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~ 169 (337)
T d1pbyb_ 92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVED 169 (337)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEE
T ss_pred CCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEE
Confidence 9999988763 57788999876555444445667889999999999998864 478899999988877
Q ss_pred EeeccCCeE------EEEe----cCCCE--------------EEEEeCCCeEEEEEcCCCcceE-EEecCCCcEEEEEEc
Q 010754 353 FEFHSGPTL------DVDW----RNNVS--------------FATSSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWD 407 (502)
Q Consensus 353 ~~~~~~~v~------~v~~----~~~~~--------------~~~~~~d~~i~i~d~~~~~~~~-~~~~h~~~i~~l~~s 407 (502)
+..+..... ...+ ..... +.....++.+.+|+..++.... .+..+...+..+.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (337)
T d1pbyb_ 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN 249 (337)
T ss_dssp ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred eecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec
Confidence 755332110 0000 00011 1112234568899998887544 355577788899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 408 PTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 408 p~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|||. .+++++.++.+.+|+.
T Consensus 250 ~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~-------~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 250 PAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGS-------TVWLGGALGDLAAYDA 308 (337)
T ss_dssp TTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSC-------EEEEESBSSEEEEEET
T ss_pred ccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCC-------EEEEEeCCCcEEEEEC
Confidence 999998876 4789999999999998886 566789999999998 8888999999999985
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=2.3e-18 Score=162.67 Aligned_cols=232 Identities=8% Similarity=-0.024 Sum_probs=159.5
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEE-EECCCeEE
Q 010754 221 CAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLAT-GSYDGQAR 299 (502)
Q Consensus 221 ~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s-~~~dg~i~ 299 (502)
++|++++++|++++.|++|.+||+.+++.+. .+. ..+...+.+++|+|||+++++ ++.++.|+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~-------------t~~---~~~~~~p~~l~~spDG~~l~v~~~~~~~v~ 65 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK-------------SCV---MPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEE-------------EEE---CSSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE-------------EEE---cCCCCCcceEEECCCCCEEEEEECCCCcEE
Confidence 4788999999999999999999999876422 111 122345789999999998754 55789999
Q ss_pred EEECCCc-eEEEecC------ccCCeEEEEEecCCCEEEEEe------------cCCeEEEEEcCCCceEEEEeec--cC
Q 010754 300 IWSTNGD-LKCTLSK------HKGPIFSLKWNKKGDYLLTGS------------CDKTAIVWDVKTEEWKQQFEFH--SG 358 (502)
Q Consensus 300 iwd~~~~-~~~~~~~------~~~~v~~l~~~~~~~~l~s~~------------~d~~i~~wd~~~~~~~~~~~~~--~~ 358 (502)
+||+... ....+.. +...+..++|+|+|+++++++ .++.+.+||..+++....+..+ ..
T Consensus 66 ~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 145 (346)
T d1jmxb_ 66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR 145 (346)
T ss_dssp EEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS
T ss_pred EEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccC
Confidence 9998754 3333322 123467899999999988765 4678999998776543222111 11
Q ss_pred CeEEEEecCCCEEEE-----------------------------------------------------------------
Q 010754 359 PTLDVDWRNNVSFAT----------------------------------------------------------------- 373 (502)
Q Consensus 359 ~v~~v~~~~~~~~~~----------------------------------------------------------------- 373 (502)
.+..+.+.++..+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (346)
T d1jmxb_ 146 QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225 (346)
T ss_dssp SCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred ceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEee
Confidence 111122222221111
Q ss_pred EeCCCeEEEEEcCCCcceE-EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCC
Q 010754 374 SSTDNMIYVCKIGENRPIK-TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTG 452 (502)
Q Consensus 374 ~~~d~~i~i~d~~~~~~~~-~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g 452 (502)
+..+..+.+|+..++.... .+..|...+..+.+++++.+++++.. +.|++||..+++.+..+. +...+.+++|||||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG 303 (346)
T d1jmxb_ 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKG 303 (346)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSS
T ss_pred ccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCC
Confidence 1223345556665554332 33456677888899999888887765 579999999999998876 45579999999999
Q ss_pred CCCCCCCccEEEEeecCceEEEEee
Q 010754 453 SGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 453 ~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
+ .+++++.++.+.+|+..
T Consensus 304 ~-------~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 304 D-------KLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp S-------CEEEESBSSEEEEEETT
T ss_pred C-------EEEEEeCCCcEEEEECc
Confidence 8 88999999999999753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.79 E-value=2.4e-18 Score=168.58 Aligned_cols=223 Identities=12% Similarity=0.039 Sum_probs=152.5
Q ss_pred CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCce
Q 010754 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGDL 307 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~ 307 (502)
-++++++.||+|+|||+.+++.+. .+.. ...+..++|+|||++|++++.||.|++||+.+..
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~-------------~l~~-----g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~ 94 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVK-------------VIDT-----GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEE-------------EEEC-----CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEE-------------EEeC-----CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCc
Confidence 356888899999999999887432 2211 1358999999999999999999999999987432
Q ss_pred -E-----EEecCccCCeEEEEEecCCCEEEE-EecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCC--EEEEEeC--
Q 010754 308 -K-----CTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNV--SFATSST-- 376 (502)
Q Consensus 308 -~-----~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~~~~-- 376 (502)
. .....|.+.+.+++|+|+|+++++ +..++.+++||..++.++..+..+...+..+.+.++. ..++.+.
T Consensus 95 ~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~ 174 (426)
T d1hzua2 95 PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 174 (426)
T ss_dssp CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCC
Confidence 1 222356777788889999998755 4579999999999999888877665444333332221 2233333
Q ss_pred ---------CCeEEEEEcCCCcce-EEEecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC---------------
Q 010754 377 ---------DNMIYVCKIGENRPI-KTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQD--------------- 430 (502)
Q Consensus 377 ---------d~~i~i~d~~~~~~~-~~~~~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~--------------- 430 (502)
.+.+.+++......+ .....+...+..+.|+|++++++++.. +..+.+|+..++
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (426)
T d1hzua2 175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG 254 (426)
T ss_dssp SEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred CEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence 344445544444322 233456777889999999988776653 344566655433
Q ss_pred ---------------------------------------eeEEEeccCCCcEEEEEEccCCCCCCCCCccEEE-------
Q 010754 431 ---------------------------------------KYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLIL------- 464 (502)
Q Consensus 431 ---------------------------------------~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~l------- 464 (502)
++...+.+|...+..++|+|+|. .+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~-------~l~v~~~~~~s 327 (426)
T d1hzua2 255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS-------HLYVDTTFNPD 327 (426)
T ss_dssp CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS-------EEEECCTTCSS
T ss_pred ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc-------eEEEeecCCCC
Confidence 33445667788889999999998 3332
Q ss_pred EeecCceEEEE
Q 010754 465 ARLIPYFLYWI 475 (502)
Q Consensus 465 as~~~~~~iw~ 475 (502)
++.++++++|+
T Consensus 328 ~~~~~tv~vwd 338 (426)
T d1hzua2 328 ARISQSVAVFD 338 (426)
T ss_dssp HHHHTCEEEEE
T ss_pred cccCCEEEEEE
Confidence 23467899996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=2.1e-17 Score=161.77 Aligned_cols=250 Identities=12% Similarity=-0.009 Sum_probs=166.4
Q ss_pred CceEEeccCCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 206 SDVTILEGHTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 206 ~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+.+..+..|. .+..++|+|||++|++++.|+++++||+.+++... ...+.. ...+...+.+..|+||
T Consensus 53 ~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~--------~~~i~~----~~~~~~~~~s~~~SpD 119 (432)
T d1qksa2 53 EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT--------VAEIKI----GSEARSIETSKMEGWE 119 (432)
T ss_dssp CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE--------EEEEEC----CSEEEEEEECCSTTCT
T ss_pred cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE--------EEEEec----CCCCCCeEEecccCCC
Confidence 4466777764 69999999999999999999999999998765311 011111 1122334666678899
Q ss_pred CCEE-EEEECCCeEEEEECCC-ceEEEecC-----------ccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceEE
Q 010754 286 GTLL-ATGSYDGQARIWSTNG-DLKCTLSK-----------HKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 286 g~~l-~s~~~dg~i~iwd~~~-~~~~~~~~-----------~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~ 351 (502)
|++| ++++.++.|++||..+ .....+.. +......+.++|++..++ +...++.|.+||..+.+...
T Consensus 120 G~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~ 199 (432)
T d1qksa2 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK 199 (432)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE
T ss_pred CCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcce
Confidence 9976 6778899999999764 44444333 344567788999998765 55668999999998887655
Q ss_pred EEe-eccCCeEEEEecCCCE-EEE-EeCCCeEEEEEcCCCcceEEEe---------------------------------
Q 010754 352 QFE-FHSGPTLDVDWRNNVS-FAT-SSTDNMIYVCKIGENRPIKTFA--------------------------------- 395 (502)
Q Consensus 352 ~~~-~~~~~v~~v~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~~~~--------------------------------- 395 (502)
... .+...+.++.++|++. +++ +..++.+.++|..+++.+..+.
T Consensus 200 ~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v 279 (432)
T d1qksa2 200 TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSV 279 (432)
T ss_dssp EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEE
T ss_pred EEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceE
Confidence 444 3455678899988865 344 4456678888887654432221
Q ss_pred -----------cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------------------------eEE------
Q 010754 396 -----------GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK------------------------YVH------ 434 (502)
Q Consensus 396 -----------~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~------------------------~~~------ 434 (502)
.|...+....++|++..+++++.+++.++|+..+.. .++
T Consensus 280 ~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~ 359 (432)
T d1qksa2 280 ALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAE 359 (432)
T ss_dssp EEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHH
T ss_pred EecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCceEeccccc
Confidence 122245566677777777777777666666543211 111
Q ss_pred --EeccCCCcEEEEEEccCCCCCCCCCccEEEEee-----cCceEEEE
Q 010754 435 --DLREHSKEIYTIRWSPTGSGTNNPNQQLILARL-----IPYFLYWI 475 (502)
Q Consensus 435 --~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-----~~~~~iw~ 475 (502)
.+..|...|.+++|||||. ++++... ++.+.+|+
T Consensus 360 ~~~l~~~~~~v~~~~fS~DG~-------~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 360 WAGITEGQPRVVQGEFNKDGT-------EVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp HHTCCSSCCEEEEEEECTTSS-------EEEEEEECCTTSCCEEEEEE
T ss_pred ccccCCCCCcEEEeEECCCCC-------EEEEEEecCCCCCCcEEEEE
Confidence 1224667799999999998 5544432 35678886
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=3.4e-17 Score=160.22 Aligned_cols=190 Identities=10% Similarity=-0.032 Sum_probs=143.3
Q ss_pred CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEEEEECCCc-
Q 010754 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQARIWSTNGD- 306 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~- 306 (502)
-++++.+.||+|.|||..+++.+. .+.. ...+..++|||||+++++++.||.|++||+...
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~-------------~~~~-----g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~ 94 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKT-------------VLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE 94 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEE-------------EEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEE-------------EEeC-----CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC
Confidence 346899999999999999887432 1211 135899999999999999999999999997632
Q ss_pred --eE---EEecCccCCeEEEEEecCCCEE-EEEecCCeEEEEEcCCCceEEEEeecc-----------CCeEEEEecCCC
Q 010754 307 --LK---CTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQFEFHS-----------GPTLDVDWRNNV 369 (502)
Q Consensus 307 --~~---~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~-----------~~v~~v~~~~~~ 369 (502)
.. .....|.+.+.+..|+|||++| ++++.+++|++||..+++++..+..+. +....+.+++++
T Consensus 95 ~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg 174 (432)
T d1qksa2 95 PTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 174 (432)
T ss_dssp CCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred ceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence 12 2223566777778889999986 678889999999999999988876543 345567776654
Q ss_pred E--EEEEeCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEE
Q 010754 370 S--FATSSTDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 370 ~--~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~ 435 (502)
. +++...++.|.+|+..+.+...... .+...+..++|+|+|+++++++. ++.+.+||..+++.+..
T Consensus 175 ~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 175 PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred CEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence 3 4566778999999998876544333 35567889999999998877765 56789999887665443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.1e-15 Score=143.42 Aligned_cols=268 Identities=12% Similarity=0.125 Sum_probs=178.9
Q ss_pred ccCCCceEEEEEcCCCCeEEEEe-CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE
Q 010754 212 EGHTSEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA 290 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sgs-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~ 290 (502)
..|.+.|..++|+|||++|++++ .|+.|++|++....... ...... .....+..++|+|||++|+
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~---------~~~~~~-----~~~~~p~~l~~spDg~~l~ 98 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------TFAAES-----ALPGSLTHISTDHQGQFVF 98 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---------EEEEEE-----ECSSCCSEEEECTTSSEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE---------EEeeec-----ccCCCceEEEEcCCCCEEe
Confidence 36889999999999999885554 58999999998654211 011111 1234577899999999999
Q ss_pred EEEC-CCeEEEEECCCce---EEEecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEEEEe------eccCC
Q 010754 291 TGSY-DGQARIWSTNGDL---KCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQFE------FHSGP 359 (502)
Q Consensus 291 s~~~-dg~i~iwd~~~~~---~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~------~~~~~ 359 (502)
+++. ++.|.+|+..... ......+...+.++.++|+++++++++. +..|.+|+........... .....
T Consensus 99 v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (333)
T d1ri6a_ 99 VGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAG 178 (333)
T ss_dssp EEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCC
T ss_pred ecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCC
Confidence 9986 5789999866432 2334456677889999999998887765 5679999987654332211 12344
Q ss_pred eEEEEecCCCEE--EEEeCCCeEEEEEcCCCcc----eEEEe------cCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 010754 360 TLDVDWRNNVSF--ATSSTDNMIYVCKIGENRP----IKTFA------GHQGEVNCVKWDPTGSLLASC-SDDVTAKIWN 426 (502)
Q Consensus 360 v~~v~~~~~~~~--~~~~~d~~i~i~d~~~~~~----~~~~~------~h~~~i~~l~~sp~g~~las~-s~dg~i~iwd 426 (502)
...+.|.++..+ .+....+...+|+...... ..... ........+++++++++++.. ..++.+.+|+
T Consensus 179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~ 258 (333)
T d1ri6a_ 179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 258 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEE
Confidence 677888766543 3444667788888654432 11221 123457788999999976654 5578999999
Q ss_pred CCCCeeEEEec---cCCCcEEEEEEccCCCCCCCCCccEEEEee-cCceEEEEeeeE---EEeeecccccCcceeeeecc
Q 010754 427 MKQDKYVHDLR---EHSKEIYTIRWSPTGSGTNNPNQQLILARL-IPYFLYWICSIY---FKYFGTTERANLPLHLACSD 499 (502)
Q Consensus 427 ~~~~~~~~~~~---~h~~~i~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~~~~~---~~~~g~~~~~~~~~~~~~~~ 499 (502)
+........+. .+...+.+++|+|||+ .|+++.. ++.+++|..+.. ....+.......|.....++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~p~~~a~spDGk-------~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g~~p~~v~~~~ 331 (333)
T d1ri6a_ 259 VSEDGSVLSKEGFQPTETQPRGFNVDHSGK-------YLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNA 331 (333)
T ss_dssp ECTTSCCEEEEEEEECSSSCCCEEECTTSS-------EEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEE
T ss_pred EcCCCCEEEEEEEeCCCCCeeEEEEeCCCC-------EEEEEECCCCeEEEEEEECCCCcEEEEEeccCCCCCcEEEEEc
Confidence 87654333322 3445678899999998 6665544 477899965432 35556666666677776665
Q ss_pred c
Q 010754 500 V 500 (502)
Q Consensus 500 ~ 500 (502)
.
T Consensus 332 ~ 332 (333)
T d1ri6a_ 332 H 332 (333)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.73 E-value=2.3e-15 Score=138.85 Aligned_cols=217 Identities=10% Similarity=0.105 Sum_probs=164.4
Q ss_pred EEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE-EEECCCeEEEEECCC-ce
Q 010754 230 LASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQARIWSTNG-DL 307 (502)
Q Consensus 230 l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-s~~~dg~i~iwd~~~-~~ 307 (502)
+++++.|++|.+||+.+++.+. .+. ....+..++|+|+|++|+ +++.++.|++||+.+ ..
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~-------------~i~-----~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~ 66 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTA-------------TIP-----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEE-------------EEE-----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred EEEECCCCEEEEEECCCCeEEE-------------EEE-----CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce
Confidence 4567889999999999876422 111 123578999999999875 566789999999875 45
Q ss_pred EEEecCccCCeEEEEEecCCCEEEE-EecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE--EEEEeCCCeEEEEE
Q 010754 308 KCTLSKHKGPIFSLKWNKKGDYLLT-GSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCK 384 (502)
Q Consensus 308 ~~~~~~~~~~v~~l~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d 384 (502)
+..+..+. .+..+.|++++.++++ +..++.+.+|+..+++....+..+ .....+.+++++. ++++..++.+.+|+
T Consensus 67 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~ 144 (301)
T d1l0qa2 67 IATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVIN 144 (301)
T ss_dssp EEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eeeeeccc-cccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeee
Confidence 55555554 4689999999986654 556789999999999888877654 4567788877654 45666788999999
Q ss_pred cCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEE
Q 010754 385 IGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLI 463 (502)
Q Consensus 385 ~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-g~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~ 463 (502)
..+...+..+..+ ..+..+.++|++.++++++.+ +.+.+|+....+....+..+ ..+..++|+++|. .++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-------~~~ 215 (301)
T d1l0qa2 145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGT-------KAY 215 (301)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSS-------EEE
T ss_pred ccccceeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeeccccc-CCcceeecccccc-------ccc
Confidence 9999988888744 568899999999988877765 67888888888877776644 4578899999998 666
Q ss_pred EEeec---CceEEEE
Q 010754 464 LARLI---PYFLYWI 475 (502)
Q Consensus 464 las~~---~~~~iw~ 475 (502)
+++.+ +.+.+|+
T Consensus 216 v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 216 VTNVDKYFNTVSMID 230 (301)
T ss_dssp EEEECSSCCEEEEEE
T ss_pred cccccceeeeeeeee
Confidence 66554 3467774
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.68 E-value=6e-16 Score=145.78 Aligned_cols=221 Identities=11% Similarity=-0.020 Sum_probs=140.8
Q ss_pred eEEec-cCCCceEEEEEcCCCCeE-EEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCC
Q 010754 208 VTILE-GHTSEVCACAWSPAGSLL-ASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGE 285 (502)
Q Consensus 208 ~~~l~-~H~~~V~~~~~~p~~~~l-~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 285 (502)
+..++ .|...+.+++|+|||+++ ++++.++.|++||+.+++........ .....+...+..++|+||
T Consensus 31 ~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~-----------~~~~~~~~~~~~v~~s~D 99 (346)
T d1jmxb_ 31 YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS-----------SVPGEVGRSMYSFAISPD 99 (346)
T ss_dssp EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC-----------CSTTEEEECSSCEEECTT
T ss_pred EEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc-----------ccccccCCceEEEEEecC
Confidence 44554 456678899999999876 56667899999999987643211100 000011112445666666
Q ss_pred CCEEEEEE------------CCCeEEEEECC-----------------------------------------C-ceEEEe
Q 010754 286 GTLLATGS------------YDGQARIWSTN-----------------------------------------G-DLKCTL 311 (502)
Q Consensus 286 g~~l~s~~------------~dg~i~iwd~~-----------------------------------------~-~~~~~~ 311 (502)
|+++++++ .++.+.+|+.. . .....+
T Consensus 100 G~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (346)
T d1jmxb_ 100 GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179 (346)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEE
T ss_pred CCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEE
Confidence 66655543 24445555432 1 111111
Q ss_pred cCccCCeEEEEEecCCCE--------------------------EEEEecCCeEEEEEcCCCceEEE-EeeccCCeEEEE
Q 010754 312 SKHKGPIFSLKWNKKGDY--------------------------LLTGSCDKTAIVWDVKTEEWKQQ-FEFHSGPTLDVD 364 (502)
Q Consensus 312 ~~~~~~v~~l~~~~~~~~--------------------------l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~v~ 364 (502)
..+ .....+.++|++.. +.++..++.+.+||+.++..... +..+...+..+.
T Consensus 180 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (346)
T d1jmxb_ 180 PLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258 (346)
T ss_dssp CST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred ecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEE
Confidence 111 11122223333222 22333445678888877765544 445667788888
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 365 WRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 365 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
+.++...++...++.|.+||..+++.+..+. +...+.+++|+|||++|++++.||.|+|||..+++.+..+..+.+
T Consensus 259 ~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 259 RSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp ECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 8766554444556789999999999888876 556799999999999999999999999999999999998885443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.68 E-value=1.8e-14 Score=137.48 Aligned_cols=229 Identities=7% Similarity=-0.066 Sum_probs=154.2
Q ss_pred ceEEeccCCCceEEEEEcCCCCeEEEEe----------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCC
Q 010754 207 DVTILEGHTSEVCACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 276 (502)
Q Consensus 207 ~~~~l~~H~~~V~~~~~~p~~~~l~sgs----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (502)
.+..+.++..+ .++|+|||++|++++ .++.|.+||+.+++............. .....
T Consensus 59 ~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~----------~~~~~ 126 (373)
T d2madh_ 59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRF----------DVGPY 126 (373)
T ss_pred EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCccee----------EeccC
Confidence 34455555543 789999999998875 457899999998875432221111000 00112
Q ss_pred eEEEEECCCCCEEEEEEC--CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEE-EEEecCCeEEEEEcCCCceEEEE
Q 010754 277 VTTLDWNGEGTLLATGSY--DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYL-LTGSCDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~ 353 (502)
...+.|+++++.++.... ++.+.+|+....... .+.....++.++|+++.+ ++.+.|+.+.+||...+......
T Consensus 127 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~ 203 (373)
T d2madh_ 127 SWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGL 203 (373)
T ss_pred CCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEE---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEE
Confidence 356889999997766654 467888987654332 233446778899988654 67888999999998765543322
Q ss_pred eecc--------------------------CCe---------------------------------EEEEecC-------
Q 010754 354 EFHS--------------------------GPT---------------------------------LDVDWRN------- 367 (502)
Q Consensus 354 ~~~~--------------------------~~v---------------------------------~~v~~~~------- 367 (502)
..+. +.+ ..+.+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 283 (373)
T d2madh_ 204 VGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYL 283 (373)
T ss_pred eeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEE
Confidence 1100 000 0011111
Q ss_pred ----CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEeccCCC
Q 010754 368 ----NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSK 441 (502)
Q Consensus 368 ----~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~--~las~s~dg~i~iwd~~~~~~~~~~~~h~~ 441 (502)
...++....++.+.+||..+++.+..+. +...+.+++|+|||+ ++++++.|++|+|||+.+++.+..+..+..
T Consensus 284 ~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~ 362 (373)
T d2madh_ 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS 362 (373)
T ss_pred ecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC
Confidence 1223445566788999999998888776 667799999999998 457889999999999999999999998877
Q ss_pred cEEEEEEccC
Q 010754 442 EIYTIRWSPT 451 (502)
Q Consensus 442 ~i~~v~~sp~ 451 (502)
..+.|+..++
T Consensus 363 ~P~~l~~~~~ 372 (373)
T d2madh_ 363 GPQVLSVMNE 372 (373)
T ss_pred CCcEEEEecC
Confidence 7778777654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.64 E-value=1.3e-13 Score=131.31 Aligned_cols=235 Identities=9% Similarity=-0.029 Sum_probs=151.6
Q ss_pred ccCCCceEEEEEcCCCCeEEEE-----eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC
Q 010754 212 EGHTSEVCACAWSPAGSLLASG-----SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG 286 (502)
Q Consensus 212 ~~H~~~V~~~~~~p~~~~l~sg-----s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g 286 (502)
.+|.+++.+++++|+|+.++.. +.++.|.+||..+++... .+.. .....++|+|||
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~-------------~~~~------~~~~~~a~SpDG 77 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG-------------HVNG------GFLPNPVAAHSG 77 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE-------------EEeC------CCCccEEEcCCC
Confidence 4577889999999999988764 234579999988876432 1111 123368999999
Q ss_pred CEEEEEEC----------CCeEEEEECCC-ceEEEecCccCCe-------EEEEEecCCCEEEEEe--cCCeEEEEEcCC
Q 010754 287 TLLATGSY----------DGQARIWSTNG-DLKCTLSKHKGPI-------FSLKWNKKGDYLLTGS--CDKTAIVWDVKT 346 (502)
Q Consensus 287 ~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~~~~v-------~~l~~~~~~~~l~s~~--~d~~i~~wd~~~ 346 (502)
++|++++. ++.|.+||..+ +....+..+.... ..+.|+++++.++... .++.+.+|+..+
T Consensus 78 ~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~ 157 (373)
T d2madh_ 78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG 157 (373)
T ss_pred CEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC
Confidence 99998753 57899999875 4444444443332 4578889988766554 456889999877
Q ss_pred CceEEEEeeccCCeEEEEecCC--CEEEEEeCCCeEEEEEcCCCcceEEE------------------------------
Q 010754 347 EEWKQQFEFHSGPTLDVDWRNN--VSFATSSTDNMIYVCKIGENRPIKTF------------------------------ 394 (502)
Q Consensus 347 ~~~~~~~~~~~~~v~~v~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~------------------------------ 394 (502)
.+...... ...++.++++ ..+++.+.|+.+.+|+...+......
T Consensus 158 ~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (373)
T d2madh_ 158 SSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS 233 (373)
T ss_pred CeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCC
Confidence 66544332 2334444333 23556666666666665443222111
Q ss_pred -------------------ecCC----------CcEEEEEEcCCCCEE----------EEEeCCCcEEEEECCCCeeEEE
Q 010754 395 -------------------AGHQ----------GEVNCVKWDPTGSLL----------ASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 395 -------------------~~h~----------~~i~~l~~sp~g~~l----------as~s~dg~i~iwd~~~~~~~~~ 435 (502)
..+. .....++++|++..+ ++...++.+.+||..+++.+..
T Consensus 234 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~ 313 (373)
T d2madh_ 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEE
Confidence 0010 112234555555543 3455667899999999999988
Q ss_pred eccCCCcEEEEEEccCCCCCCCCCccEE--EEeecCceEEEEee
Q 010754 436 LREHSKEIYTIRWSPTGSGTNNPNQQLI--LARLIPYFLYWICS 477 (502)
Q Consensus 436 ~~~h~~~i~~v~~sp~g~~~~~~~~~l~--las~~~~~~iw~~~ 477 (502)
+. +...+.+++|+|||+ .++ +++.++.+++|+..
T Consensus 314 ~~-~~~~~~~~a~spDG~-------~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 314 IS-LGHDVDAISVAQDGG-------PDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred ec-CCCCeeEEEECCCCC-------EEEEEEeCCCCeEEEEECC
Confidence 76 666799999999997 443 45667789999754
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=3.2e-14 Score=134.57 Aligned_cols=232 Identities=12% Similarity=0.094 Sum_probs=149.1
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEE----------eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCe
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASG----------SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sg----------s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (502)
+..+..+.. ..++|+|||++|+++ +.|+.|++||+.+++.... +..............
T Consensus 41 ~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~----------~~~~~~~~~~~~~~~ 108 (355)
T d2bbkh_ 41 IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD----------IELPDAPRFLVGTYP 108 (355)
T ss_dssp EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE----------EEETTCCCCCBSCCG
T ss_pred EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEE----------EecCCcceeecCCCC
Confidence 444544443 378999999988764 3478999999998764321 111111111122335
Q ss_pred EEEEECCCCCEEEEEEC--CCeEEEEECCCce-EEEecC-----------------------------------------
Q 010754 278 TTLDWNGEGTLLATGSY--DGQARIWSTNGDL-KCTLSK----------------------------------------- 313 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~--dg~i~iwd~~~~~-~~~~~~----------------------------------------- 313 (502)
..++|+++|++++++.. +..+.+|+..... ...+..
T Consensus 109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~ 188 (355)
T d2bbkh_ 109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188 (355)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence 67889999998887754 4678889865432 111110
Q ss_pred ----ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE--EEeecc----------CCeEEEEecCCCE-EEEEeC
Q 010754 314 ----HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ--QFEFHS----------GPTLDVDWRNNVS-FATSST 376 (502)
Q Consensus 314 ----~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~----------~~v~~v~~~~~~~-~~~~~~ 376 (502)
+...+....+.+++..++.++.++.+++|++..+.... ....+. .....+.++++.. ++....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~ 268 (355)
T d2bbkh_ 189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268 (355)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred ccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEec
Confidence 11112334556666778888889999999988775422 111111 1122345544433 222221
Q ss_pred ----------CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEeccCCCcEE
Q 010754 377 ----------DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHSKEIY 444 (502)
Q Consensus 377 ----------d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~--~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~ 444 (502)
.+.|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|+.|+|||+.+++.+.++.++...-.
T Consensus 269 ~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~ 347 (355)
T d2bbkh_ 269 QRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 347 (355)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred cCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCcc
Confidence 2479999999999888886 445688999999997 456778899999999999999999987766556
Q ss_pred EEEEccCC
Q 010754 445 TIRWSPTG 452 (502)
Q Consensus 445 ~v~~sp~g 452 (502)
.|.+.++|
T Consensus 348 ~i~~~d~~ 355 (355)
T d2bbkh_ 348 VITTADMG 355 (355)
T ss_dssp EEECCCCC
T ss_pred EEEeCCCC
Confidence 66655543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=3.6e-14 Score=132.77 Aligned_cols=220 Identities=7% Similarity=-0.015 Sum_probs=154.2
Q ss_pred CeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEE-EEECCCeEEEEECCC-
Q 010754 228 SLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLA-TGSYDGQARIWSTNG- 305 (502)
Q Consensus 228 ~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~-s~~~dg~i~iwd~~~- 305 (502)
.+|++++.|++|+|||+.+++.+. .+.. ..+...+.+++|+|||++++ +++.++.|.+||+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~-------------~i~~--~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~ 66 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDK-------------VITI--ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG 66 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE-------------EEEC--TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC
T ss_pred eEEEEEcCCCEEEEEECCCCeEEE-------------EEEC--CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 479999999999999999876322 1111 11234578899999999874 567889999999874
Q ss_pred ceEEEecCc-----cCCeEEEEEecCCCEEEEEec------------CCeEEEEEcCCCceEEEEeeccCCeEEEEecCC
Q 010754 306 DLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSC------------DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368 (502)
Q Consensus 306 ~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~ 368 (502)
+....+..+ ...+..++|+|++++++++.. +..+.+||..++.....+... ..+..+.|+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~d 145 (337)
T d1pbyb_ 67 ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWARD 145 (337)
T ss_dssp CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEECTT
T ss_pred cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEcCC
Confidence 444555443 234567999999999987763 578999999999988887644 45778889887
Q ss_pred CE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCC------------------------CCEEEEEeCCCcEE
Q 010754 369 VS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPT------------------------GSLLASCSDDVTAK 423 (502)
Q Consensus 369 ~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~------------------------g~~las~s~dg~i~ 423 (502)
+. +++++ +.+.+||..+++....+..+... ....++|+ ...+..++.++.+.
T Consensus 146 g~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (337)
T d1pbyb_ 146 GSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp SSCEEEES--SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CCEEEEEc--CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence 66 44443 45778999998887777543211 11111221 11122223345699
Q ss_pred EEECCCCeeEEE-eccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEE
Q 010754 424 IWNMKQDKYVHD-LREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWI 475 (502)
Q Consensus 424 iwd~~~~~~~~~-~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~ 475 (502)
+|+..++..... +..+...+..++++|++. .+.+.++.+++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~v~d 266 (337)
T d1pbyb_ 223 TMDLETGEMAMREVRIMDVFYFSTAVNPAKT---------RAFGAYNVLESFD 266 (337)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECTTSS---------EEEEEESEEEEEE
T ss_pred EEEcCCCcEEEEEecCCCcceEEEEecccce---------EEEEccccEEEEE
Confidence 999998876543 446777889999999988 6677789999995
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=2.6e-14 Score=135.20 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=154.5
Q ss_pred EEEEEcCCCCeEEEEe-----CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 219 CACAWSPAGSLLASGS-----GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
.-.+.+||++.++... .+++|.+||..+++.+. ... .+.+..++|+|||++|++++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~-------------~~~------~g~~~~~a~SpDg~~l~v~~ 65 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG-------------MID------GGFLPNPVVADDGSFIAHAS 65 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE-------------EEE------ECSSCEEEECTTSSCEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE-------------EEE------CCCCCceEEcCCCCEEEEEe
Confidence 3346689999887653 45679999998876422 111 12344789999999887654
Q ss_pred ----------CCCeEEEEECCCc-eEEEecCc-------cCCeEEEEEecCCCEEEEEe--cCCeEEEEEcCCCceEEEE
Q 010754 294 ----------YDGQARIWSTNGD-LKCTLSKH-------KGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQF 353 (502)
Q Consensus 294 ----------~dg~i~iwd~~~~-~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~ 353 (502)
.++.|++||..+. ....+..+ ......+.|+|+++++++++ .+..+.+||..+++.+..+
T Consensus 66 ~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 145 (355)
T d2bbkh_ 66 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML 145 (355)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred CCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE
Confidence 4789999998753 33333222 12345689999999888765 4678999999988776654
Q ss_pred eeccC------------------CeE---------------------------EEEe-cCCCEEEEEeCCCeEEEEEcCC
Q 010754 354 EFHSG------------------PTL---------------------------DVDW-RNNVSFATSSTDNMIYVCKIGE 387 (502)
Q Consensus 354 ~~~~~------------------~v~---------------------------~v~~-~~~~~~~~~~~d~~i~i~d~~~ 387 (502)
..... ... ...+ .++..++.++.++.+++|++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 225 (355)
T d2bbkh_ 146 DVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS 225 (355)
T ss_dssp ECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred ecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCC
Confidence 32110 000 0111 2345578888999999999987
Q ss_pred Ccce--EEEecCC----------CcEEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCeeEEEeccCCCcEEE
Q 010754 388 NRPI--KTFAGHQ----------GEVNCVKWDPTGSLLASCSDD----------VTAKIWNMKQDKYVHDLREHSKEIYT 445 (502)
Q Consensus 388 ~~~~--~~~~~h~----------~~i~~l~~sp~g~~las~s~d----------g~i~iwd~~~~~~~~~~~~h~~~i~~ 445 (502)
+... .....+. .....+++++++..++..+.+ ..|.+||..+++.+..+. +...+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~ 304 (355)
T d2bbkh_ 226 GDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDS 304 (355)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECE
T ss_pred CcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEE
Confidence 7532 2222221 123458899999988766543 369999999999988886 4456899
Q ss_pred EEEccCCCCCCCCCccEEEEe--ecCceEEEEe
Q 010754 446 IRWSPTGSGTNNPNQQLILAR--LIPYFLYWIC 476 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las--~~~~~~iw~~ 476 (502)
++|+|||+ .+++++ .++.+.+|+.
T Consensus 305 ~a~spDG~-------~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 305 INVSQDEK-------PLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp EEECCSSS-------CEEEEEETTTTEEEEEET
T ss_pred EEEcCCCC-------eEEEEEECCCCEEEEEEC
Confidence 99999997 444444 3577888864
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=2.3e-12 Score=120.19 Aligned_cols=225 Identities=9% Similarity=0.137 Sum_probs=148.1
Q ss_pred eEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEECCCc-
Q 010754 229 LLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-DGQARIWSTNGD- 306 (502)
Q Consensus 229 ~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~-dg~i~iwd~~~~- 306 (502)
.+++++.|++|++|++...... ..+.. ..+...+..|+|+|||++|++++. |+.|++|++...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l----------~~~~~-----~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~ 70 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGAL----------TLTQV-----VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD 70 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCE----------EEEEE-----EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEECCCCCcEEEEEEcCCCCe----------EEEEE-----EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC
Confidence 4678889999999999764321 01111 223567999999999999966664 799999997632
Q ss_pred ---eEEEecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCCceEEEE--eeccCCeEEEEecCCCE-EE-EEeCCC
Q 010754 307 ---LKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTEEWKQQF--EFHSGPTLDVDWRNNVS-FA-TSSTDN 378 (502)
Q Consensus 307 ---~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~--~~~~~~v~~v~~~~~~~-~~-~~~~d~ 378 (502)
.......+...+..++|+|+|++|++++. ++.|.+|+.......... ..+...+.++.+++++. ++ ....+.
T Consensus 71 ~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~ 150 (333)
T d1ri6a_ 71 GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD 150 (333)
T ss_dssp CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred CcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence 12222234455778999999999998875 678999988776554433 33555677888877655 33 334567
Q ss_pred eEEEEEcCCCcceEEE------ecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe----eEEEec------cCCC
Q 010754 379 MIYVCKIGENRPIKTF------AGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDK----YVHDLR------EHSK 441 (502)
Q Consensus 379 ~i~i~d~~~~~~~~~~------~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~----~~~~~~------~h~~ 441 (502)
.|.+|+.......... .........++|++++.+++... ..+...+|++.... ....+. ....
T Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (333)
T d1ri6a_ 151 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 230 (333)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred eeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccc
Confidence 7999998776433221 22345678899999999887665 45678888864322 112221 2234
Q ss_pred cEEEEEEccCCCCCCCCCccEEEEe-ecCceEEEE
Q 010754 442 EIYTIRWSPTGSGTNNPNQQLILAR-LIPYFLYWI 475 (502)
Q Consensus 442 ~i~~v~~sp~g~~~~~~~~~l~las-~~~~~~iw~ 475 (502)
....++++|+|. .++.+. ..+.+.+|.
T Consensus 231 ~~~~~~~s~d~~-------~~~~~~~~~~~~~~~~ 258 (333)
T d1ri6a_ 231 WAADIHITPDGR-------HLYACDRTASLITVFS 258 (333)
T ss_dssp CEEEEEECTTSS-------EEEEEETTTTEEEEEE
T ss_pred cceeEEEecccC-------ceeeecccCCeEEEEE
Confidence 577889999997 333333 235566663
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.40 E-value=1.7e-11 Score=116.50 Aligned_cols=220 Identities=8% Similarity=-0.031 Sum_probs=124.5
Q ss_pred eEEeccCCCceEEEEEcCCCCeEEEEe----------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCe
Q 010754 208 VTILEGHTSEVCACAWSPAGSLLASGS----------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDV 277 (502)
Q Consensus 208 ~~~l~~H~~~V~~~~~~p~~~~l~sgs----------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 277 (502)
+..+.++... .++|+|||+.|++.+ .|++|++||..+++.... +..............
T Consensus 59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~----------i~~p~~~~~~~g~~p 126 (368)
T d1mdah_ 59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD----------IELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE----------EEETTSCSCCBSCCT
T ss_pred EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeee----------ecCCccceecccCCc
Confidence 3445555544 589999999888765 367899999988764321 110011111111223
Q ss_pred EEEEECCCCCEEEEEEC-CCeEEEEECCCce-EEEecCccC-------CeEEEEEecCCCEEEEEecC------------
Q 010754 278 TTLDWNGEGTLLATGSY-DGQARIWSTNGDL-KCTLSKHKG-------PIFSLKWNKKGDYLLTGSCD------------ 336 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~-dg~i~iwd~~~~~-~~~~~~~~~-------~v~~l~~~~~~~~l~s~~~d------------ 336 (502)
..++|+|||++|+++.. ++.+.+||+.... ...+..+.. ....+.++++|..++....+
T Consensus 127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~ 206 (368)
T d1mdah_ 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc
Confidence 46899999999988874 6999999977543 333322221 11222333333322222111
Q ss_pred ------------------------CeEEEEEcCCCceEEEEee--c----------cCCeEEEEecCC--CEEEEEeCC-
Q 010754 337 ------------------------KTAIVWDVKTEEWKQQFEF--H----------SGPTLDVDWRNN--VSFATSSTD- 377 (502)
Q Consensus 337 ------------------------~~i~~wd~~~~~~~~~~~~--~----------~~~v~~v~~~~~--~~~~~~~~d- 377 (502)
+.+.++++..+........ . ......+.++++ ..+++...+
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~ 286 (368)
T d1mdah_ 207 TGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS 286 (368)
T ss_dssp CTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECS
T ss_pred ccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCC
Confidence 1222222222111110000 0 000011222222 222322211
Q ss_pred -------CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEeccCC
Q 010754 378 -------NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS--LLASCSDDVTAKIWNMKQDKYVHDLREHS 440 (502)
Q Consensus 378 -------~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~--~las~s~dg~i~iwd~~~~~~~~~~~~h~ 440 (502)
..|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|+.|+|||..+++.+..+....
T Consensus 287 ~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 287 RSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp SCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence 358899999999887776 446788999999997 35677789999999999999999988543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.34 E-value=9.2e-12 Score=118.36 Aligned_cols=188 Identities=10% Similarity=-0.074 Sum_probs=117.5
Q ss_pred EEEECCCCCEEEEEE----------CCCeEEEEECCC-ceEEEecCcc-------CCeEEEEEecCCCEEEEEe-cCCeE
Q 010754 279 TLDWNGEGTLLATGS----------YDGQARIWSTNG-DLKCTLSKHK-------GPIFSLKWNKKGDYLLTGS-CDKTA 339 (502)
Q Consensus 279 ~l~~s~~g~~l~s~~----------~dg~i~iwd~~~-~~~~~~~~~~-------~~v~~l~~~~~~~~l~s~~-~d~~i 339 (502)
.++|+|||+.|++.+ .|+.|.+||..+ +....+..+. .....++|+|+|++|+++. .++.+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 588999999988865 367899999764 4444443221 2234689999999998776 57999
Q ss_pred EEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCC------------------------------------------
Q 010754 340 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD------------------------------------------ 377 (502)
Q Consensus 340 ~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d------------------------------------------ 377 (502)
.+||+.+++....+..+..... ...+...++..+.|
T Consensus 149 ~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence 9999999998887655432210 11112222222333
Q ss_pred ----CeEEEEEcCCCcceEEEe--cCC----------CcEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCee
Q 010754 378 ----NMIYVCKIGENRPIKTFA--GHQ----------GEVNCVKWDPTGSLLASCSDD---------VTAKIWNMKQDKY 432 (502)
Q Consensus 378 ----~~i~i~d~~~~~~~~~~~--~h~----------~~i~~l~~sp~g~~las~s~d---------g~i~iwd~~~~~~ 432 (502)
+.+++++...+....... .+. .....++++|++..++....+ ..|.+||..+++.
T Consensus 227 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~ 306 (368)
T d1mdah_ 227 WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT 306 (368)
T ss_dssp ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE
T ss_pred EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE
Confidence 333444443332221110 000 112347788888876655322 3589999999999
Q ss_pred EEEeccCCCcEEEEEEccCCCCCCCCCccEEEEe--ecCceEEEEe
Q 010754 433 VHDLREHSKEIYTIRWSPTGSGTNNPNQQLILAR--LIPYFLYWIC 476 (502)
Q Consensus 433 ~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las--~~~~~~iw~~ 476 (502)
+..+. +...+.+++|+|||. .++.++ .++.+.+|+.
T Consensus 307 ~~~~~-~~~~~~~~a~spDG~-------~~ly~s~~~~~~v~v~D~ 344 (368)
T d1mdah_ 307 SGPIS-NGHDSDAIIAAQDGA-------SDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp EECCE-EEEEECEEEECCSSS-------CEEEEEETTTTEEEEEES
T ss_pred eEEec-CCCceeEEEECCCCC-------EEEEEEeCCCCeEEEEEC
Confidence 88876 445789999999996 444444 3566778764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.27 E-value=2.6e-09 Score=98.07 Aligned_cols=226 Identities=10% Similarity=0.045 Sum_probs=156.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
.+..++++|||+++++...+++|..|+-..... .+. .....+.+++|+++|+++++...++
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~------------~~~-------~~~~~~~gla~~~dG~l~v~~~~~~ 89 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ------------IHA-------TVEGKVSGLAFTSNGDLVATGWNAD 89 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE------------EEE-------ECSSEEEEEEECTTSCEEEEEECTT
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE------------EEE-------cCCCCcceEEEcCCCCeEEEecCCc
Confidence 477899999999999999999888887443210 111 1134689999999999999988888
Q ss_pred eEEEEECCC---ceE-EEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec----------cCCeEE
Q 010754 297 QARIWSTNG---DLK-CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH----------SGPTLD 362 (502)
Q Consensus 297 ~i~iwd~~~---~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------~~~v~~ 362 (502)
.+.+|+... ... ............+.+.++++++++.+.++.+..+|...+......... ......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng 169 (302)
T d2p4oa1 90 SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 169 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred eEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence 888887542 211 122234556789999999999888888999999998877543322211 123566
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCcceE--EEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee-EEEeccC
Q 010754 363 VDWRNNVSFATSSTDNMIYVCKIGENRPIK--TFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY-VHDLREH 439 (502)
Q Consensus 363 v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~-~~~~~~h 439 (502)
+.+..+..+++.+..+.|+.++........ ...........++++++|+++++...++.|..++...... +......
T Consensus 170 i~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~ 249 (302)
T d2p4oa1 170 LKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG 249 (302)
T ss_dssp EEEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGT
T ss_pred ccccCCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCC
Confidence 777777778888889999999887653221 1111234456799999999888888899999998654322 2233333
Q ss_pred CCcEEEEEE---ccCCCCCCCCCccEEEEeec
Q 010754 440 SKEIYTIRW---SPTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 440 ~~~i~~v~~---sp~g~~~~~~~~~l~las~~ 468 (502)
-...++++| +||++ .|++.+..
T Consensus 250 ~~~pt~vafg~~~~D~~-------~Lyvtt~~ 274 (302)
T d2p4oa1 250 VIGSTAVAFGQTEGDCT-------AIYVVTNG 274 (302)
T ss_dssp CTTEEEEEECCSTTTTT-------EEEEEECT
T ss_pred CCCceEEEEcCCCCCCC-------EEEEECCC
Confidence 345899999 55665 55555443
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.24 E-value=4.7e-10 Score=110.01 Aligned_cols=108 Identities=11% Similarity=0.175 Sum_probs=79.3
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEeC---------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGSG---------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTL 280 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 280 (502)
.+..|...|.++.|||||++|+.++. ++.+.|||+.+++.. ....+...+..+
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~------------------~l~~~~~~~~~~ 117 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI------------------TEERIPNNTQWV 117 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC------------------CSSCCCTTEEEE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc------------------ccccCCcccccc
Confidence 34566788999999999999998853 567889999887532 122345679999
Q ss_pred EECCCCCEEEEEECCCeEEEEECCCceEEEec-C------------------ccCCeEEEEEecCCCEEEEEecC
Q 010754 281 DWNGEGTLLATGSYDGQARIWSTNGDLKCTLS-K------------------HKGPIFSLKWNKKGDYLLTGSCD 336 (502)
Q Consensus 281 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~-~------------------~~~~v~~l~~~~~~~~l~s~~~d 336 (502)
.|||||+.||... ++.+.+|+..+.....+. . ..+....+.|+|+|++|+....|
T Consensus 118 ~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 118 TWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp EECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred ccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 9999999999865 678999997754333221 1 12334568899999999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.19 E-value=5.7e-08 Score=89.22 Aligned_cols=239 Identities=10% Similarity=0.110 Sum_probs=153.7
Q ss_pred CceEEEEEcCCCCeEEEEeC-------CCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 216 SEVCACAWSPAGSLLASGSG-------DSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
...-.++|.|+|+++++... +++|..||..++... ... ..........-..++|.++|+.
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~-----------~~~--~~~~~~~~g~P~Gl~~~~dg~~ 84 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-----------VIC--KPEVNGYGGIPAGCQCDRDANQ 84 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-----------EEE--CCEETTEECCEEEEEECSSSSE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEE-----------EEE--CCccccCCCcceeEEEeCCCCE
Confidence 34567899999997776533 456888887765421 000 0000111223678999999998
Q ss_pred EEEEECCCeEEEEECCCceEEEecCcc-----CCeEEEEEecCCCEEEEEec---------------CCeEEEEEcCCCc
Q 010754 289 LATGSYDGQARIWSTNGDLKCTLSKHK-----GPIFSLKWNKKGDYLLTGSC---------------DKTAIVWDVKTEE 348 (502)
Q Consensus 289 l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~s~~~---------------d~~i~~wd~~~~~ 348 (502)
++++...+.|..++.++.....+.... .....+++.++|+..++-.. .|.|..++. .++
T Consensus 85 l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~ 163 (314)
T d1pjxa_ 85 LFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQ 163 (314)
T ss_dssp EEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSC
T ss_pred EEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCc
Confidence 888888788999998876554433221 12577999999988776432 234555543 334
Q ss_pred eEEEEeeccCCeEEEEecCCC------EEEEEeCCCeEEEEEcCCCcceE------EEec-CCCcEEEEEEcCCCCEEEE
Q 010754 349 WKQQFEFHSGPTLDVDWRNNV------SFATSSTDNMIYVCKIGENRPIK------TFAG-HQGEVNCVKWDPTGSLLAS 415 (502)
Q Consensus 349 ~~~~~~~~~~~v~~v~~~~~~------~~~~~~~d~~i~i~d~~~~~~~~------~~~~-h~~~i~~l~~sp~g~~las 415 (502)
..... ........++|+++. .+++-+..+.|+.|++.....+. .+.+ +......+++..+|++.++
T Consensus 164 ~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa 242 (314)
T d1pjxa_ 164 MIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp EEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred eeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE
Confidence 33322 233344677776542 35555778899999876543322 1111 1234678999999999888
Q ss_pred EeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEee
Q 010754 416 CSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWICS 477 (502)
Q Consensus 416 ~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~~ 477 (502)
....+.|.+||...++.+..+.......++++|.|++. .|++.+ ....+||...
T Consensus 243 ~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~-------~lyVt~-~~~g~i~~~~ 296 (314)
T d1pjxa_ 243 NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTK-------TIFVTE-HENNAVWKFE 296 (314)
T ss_dssp EETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSS-------EEEEEE-TTTTEEEEEE
T ss_pred EcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCC-------EEEEEE-CCCCcEEEEE
Confidence 88889999999888887777776666789999999886 444443 3445666543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.16 E-value=3.7e-08 Score=88.21 Aligned_cols=227 Identities=14% Similarity=0.130 Sum_probs=138.2
Q ss_pred CCceEEeccCCCceEEEEEcCCCCeEEEEeCCC---cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEE
Q 010754 205 NSDVTILEGHTSEVCACAWSPAGSLLASGSGDS---TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLD 281 (502)
Q Consensus 205 ~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 281 (502)
....+.+..+...+...+|||||+.||...... .+.+.+...+... ....+........
T Consensus 28 G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 89 (269)
T d2hqsa1 28 GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------------QVASFPRHNGAPA 89 (269)
T ss_dssp SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE------------------EEECCSSCEEEEE
T ss_pred CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee------------------EEeeeecccccce
Confidence 334455656677888999999999998765433 2444454443210 1112345678899
Q ss_pred ECCCCCEEEEEECC-Ce--EEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecCC--eEEEEEcCCCceEEEEee
Q 010754 282 WNGEGTLLATGSYD-GQ--ARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDK--TAIVWDVKTEEWKQQFEF 355 (502)
Q Consensus 282 ~s~~g~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~--~i~~wd~~~~~~~~~~~~ 355 (502)
|+|+|+.++..... +. +..+.....................+++++..++.. ..++ .|.+.++..+... ....
T Consensus 90 ~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~ 168 (269)
T d2hqsa1 90 FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW 168 (269)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC
T ss_pred ecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeec
Confidence 99999988876643 33 333333334444444455555666777777655544 4454 4566666555433 2333
Q ss_pred ccCCeEEEEecCCCE-EEE-EeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 010754 356 HSGPTLDVDWRNNVS-FAT-SSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSD---DVTAKIWNMKQD 430 (502)
Q Consensus 356 ~~~~v~~v~~~~~~~-~~~-~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~---dg~i~iwd~~~~ 430 (502)
.........|++++. ++. ....+...+|.............+........|+|||+.|+-.+. ...|++|++..+
T Consensus 169 ~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 169 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 455566777877655 333 334444444444333222334445566778899999999876554 346899999876
Q ss_pred eeEEEeccCCCcEEEEEEccC
Q 010754 431 KYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 431 ~~~~~~~~h~~~i~~v~~sp~ 451 (502)
.. ..+....+.+...+|||-
T Consensus 249 ~~-~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 249 FK-ARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp CE-EECCCSSSEEEEEEECCC
T ss_pred CE-EEEeCCCCcEEeEEeCCC
Confidence 65 456656777889999994
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=1.8e-08 Score=90.01 Aligned_cols=220 Identities=8% Similarity=-0.027 Sum_probs=138.2
Q ss_pred ceEEEEEcCCCCeEEEE-eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 217 EVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sg-s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
.-..+++.++|++.++. +..+.+..++....... . . .. ........++++++|+++++....
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~------------~--~--~~-~~~~~p~gvav~~~g~i~v~d~~~ 77 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT------------V--L--PF-NGLYQPQGLAVDGAGTVYVTDFNN 77 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEE------------E--C--CC-CSCCSCCCEEECTTCCEEEEETTT
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEE------------E--e--cc-CCccCceEEEEcCCCCEEEeeeee
Confidence 34789999999976655 44566766665443210 0 0 00 111235788899999988777666
Q ss_pred CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCC-CEEEEE
Q 010754 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN-VSFATS 374 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~-~~~~~~ 374 (502)
+.+++++.................++++.++++++++-.....+..++...................+++.++ ..+++.
T Consensus 78 ~~i~~~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~ 157 (260)
T d1rwia_ 78 RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTD 157 (260)
T ss_dssp EEEEECTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEE
T ss_pred ceeeeeeeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeec
Confidence 6777665443333222223355789999999998887767777888876554322211112233456777555 445666
Q ss_pred eCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 375 STDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 375 ~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
..++.|..++.............-.....|+++++|+++++....+.|..++.............-.....|+++++|.
T Consensus 158 ~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~ 236 (260)
T d1rwia_ 158 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT 236 (260)
T ss_dssp GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC
T ss_pred cccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC
Confidence 7778899998776544332234456678999999999998888888888888655432221122234578999999987
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.12 E-value=1.1e-09 Score=107.36 Aligned_cols=118 Identities=12% Similarity=0.102 Sum_probs=93.9
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-----
Q 010754 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY----- 294 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~----- 294 (502)
.+.|.+++.++.. .|+.+.+||+.+++... .+ -......+...|.++.|||||++|+.++.
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~----------~~--~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~ 86 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSV----------FL--ENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEE----------EE--CTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEE----------EE--chhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence 4689999987764 57889999999886321 00 11233455667999999999999998853
Q ss_pred ----CCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE
Q 010754 295 ----DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 295 ----dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 352 (502)
++.+.|||+.++....+..+...+..+.|+|+|+.|+.. .++.+++|+..++...+.
T Consensus 87 r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI 147 (470)
T ss_dssp SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred eeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeee
Confidence 478899999998888889999999999999999999985 578999999988876554
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.08 E-value=9.4e-10 Score=104.52 Aligned_cols=224 Identities=10% Similarity=0.033 Sum_probs=143.3
Q ss_pred cCCCceEEEEEcCCCCeEEEE-eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC--EE
Q 010754 213 GHTSEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT--LL 289 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sg-s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~--~l 289 (502)
.|.........+|||++|+.. ..+.+|.++|+.+.+.... . ..+....+..++|+|+|+ ++
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~i-------------i---~iP~g~gphgi~~spdg~t~YV 132 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKI-------------T---HIPNVQAIHGLRLQKVPKTNYV 132 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEE-------------E---ECTTCCCEEEEEECCSSBCCEE
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeE-------------E---ecCCCCCccceEEeccCCEEEE
Confidence 455556667778999987555 5688999999998763210 0 112345789999999998 44
Q ss_pred EEEECCC-----------------eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecC----------------
Q 010754 290 ATGSYDG-----------------QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCD---------------- 336 (502)
Q Consensus 290 ~s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d---------------- 336 (502)
+..+.+. .+..+|..+..+.......+....+.|+|+|+++++++.+
T Consensus 133 ~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d 212 (441)
T d1qnia2 133 FCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRD 212 (441)
T ss_dssp EEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBC
T ss_pred EeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEE
Confidence 4444332 2344665543332222233457889999999998887654
Q ss_pred -------------------------CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCCCc
Q 010754 337 -------------------------KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENR 389 (502)
Q Consensus 337 -------------------------~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~~ 389 (502)
+.+.+++......+..+..... ...+..+|++. ++++..+++|.+||+.+..
T Consensus 213 ~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~ 291 (441)
T d1qnia2 213 WVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLD 291 (441)
T ss_dssp EEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHH
T ss_pred EEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhh
Confidence 2344444444445555544433 45677777776 3456689999999986532
Q ss_pred c--------eEEEecC---CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CeeEEEe-----ccCCCcE
Q 010754 390 P--------IKTFAGH---QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQ----------DKYVHDL-----REHSKEI 443 (502)
Q Consensus 390 ~--------~~~~~~h---~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~----------~~~~~~~-----~~h~~~i 443 (502)
. ...+.++ .-.....+|+++|+.+.+...|..|..|++.. ...+..+ .+|...+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~ 371 (441)
T d1qnia2 292 DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHAS 371 (441)
T ss_dssp HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEET
T ss_pred hHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccc
Confidence 1 1111111 12345678999999999999999999999731 1233333 3677777
Q ss_pred EEEEEccCCC
Q 010754 444 YTIRWSPTGS 453 (502)
Q Consensus 444 ~~v~~sp~g~ 453 (502)
.+.+++|||.
T Consensus 372 ~~~t~~pdGk 381 (441)
T d1qnia2 372 LTESRDADGK 381 (441)
T ss_dssp TTTSTTCCCC
T ss_pred cccccCCCCc
Confidence 7888999998
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.07 E-value=4.7e-07 Score=81.49 Aligned_cols=237 Identities=12% Similarity=0.162 Sum_probs=159.7
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCC-CEEEEE-EC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEG-TLLATG-SY 294 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g-~~l~s~-~~ 294 (502)
.-..++++|+++++++-..+..|++||... +.+. .+.. .............+++..+. ..+++. +.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~~----------~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 91 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKF----------QFGE-CGKRDSQLLYPNRVAVVRNSGDIIVTERSP 91 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEE----------EECC-BSSSTTCBSSEEEEEEETTTTEEEEEECGG
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEEE----------Eecc-cCCCcccccccccccccccccccceeccCC
Confidence 457899999999888877888999999653 2111 0000 00011111234555655543 344433 34
Q ss_pred CCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEee--ccCCeEEEEecCCCE-
Q 010754 295 DGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEF--HSGPTLDVDWRNNVS- 370 (502)
Q Consensus 295 dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~v~~~~~~~- 370 (502)
++.|.+++..+.....+. ........+++.+++..+++....+.+.+++. .++.+..+.. +......+++.+++.
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i 170 (279)
T d1q7fa_ 92 THQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEI 170 (279)
T ss_dssp GCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred ccccccccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeE
Confidence 568888888887776663 33456788999999998888888888999885 4666666543 334567777766554
Q ss_pred EEEEeCCCeEEEEEcCCCcceEEEe--cCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEecc--CCCcEEE
Q 010754 371 FATSSTDNMIYVCKIGENRPIKTFA--GHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDKYVHDLRE--HSKEIYT 445 (502)
Q Consensus 371 ~~~~~~d~~i~i~d~~~~~~~~~~~--~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~~~~~~~~~--h~~~i~~ 445 (502)
+++....+.|++|+.. ++.+.++. +.......|+++++|+++++-+. ++.|.+|+ .+++.+..+.. .....+.
T Consensus 171 ~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~ 248 (279)
T d1q7fa_ 171 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFD 248 (279)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEE
T ss_pred EeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeE
Confidence 5566677899999864 55666663 34456889999999998877554 45799998 56887777643 2345789
Q ss_pred EEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 446 IRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 446 v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
|++.|+|. ++++..+..+++|.+
T Consensus 249 vav~~dG~--------l~V~~~n~~v~~fr~ 271 (279)
T d1q7fa_ 249 VALMDDGS--------VVLASKDYRLYIYRY 271 (279)
T ss_dssp EEEETTTE--------EEEEETTTEEEEEEC
T ss_pred EEEeCCCc--------EEEEeCCCeEEEEEe
Confidence 99999986 666766777777754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.02 E-value=4e-08 Score=93.10 Aligned_cols=239 Identities=10% Similarity=0.007 Sum_probs=142.2
Q ss_pred eEEEEeCCCcEEEEecCCCCccCCCCC---CCceeEEE--------e--eecCccccCCCCeEEEEECCCCCEEEEEE-C
Q 010754 229 LLASGSGDSTARIWTIADGTSNGGAQN---GPLNVLVL--------K--HVKGRTNEKSKDVTTLDWNGEGTLLATGS-Y 294 (502)
Q Consensus 229 ~l~sgs~dg~v~iw~~~~~~~~~~~~~---~~~~~~~~--------~--~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~ 294 (502)
.++||+.+|.|++|++.+++.+..+.. .+...... . ........|.........+|||++|++.. .
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 367888899999999988764432211 00000000 0 00000112333455566689999987765 6
Q ss_pred CCeEEEEECCCceE-EEe-cCccCCeEEEEEecCCC--EEEEEecCC-----------------eEEEEEcCCCceEEEE
Q 010754 295 DGQARIWSTNGDLK-CTL-SKHKGPIFSLKWNKKGD--YLLTGSCDK-----------------TAIVWDVKTEEWKQQF 353 (502)
Q Consensus 295 dg~i~iwd~~~~~~-~~~-~~~~~~v~~l~~~~~~~--~l~s~~~d~-----------------~i~~wd~~~~~~~~~~ 353 (502)
++.|.++|+..... ..+ ..+...+..++|+|+++ |++..+.+. .+..+|..+.+...++
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 68999999886433 333 34567889999999997 444444332 2456888888877766
Q ss_pred eeccCCeEEEEecCCCEEE-EEe-----------------------------------------CCCeEEEEEcCCCcce
Q 010754 354 EFHSGPTLDVDWRNNVSFA-TSS-----------------------------------------TDNMIYVCKIGENRPI 391 (502)
Q Consensus 354 ~~~~~~v~~v~~~~~~~~~-~~~-----------------------------------------~d~~i~i~d~~~~~~~ 391 (502)
.... ....+.+++++..+ +.+ .++.+.+++......+
T Consensus 173 ~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 173 IVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred ecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 5433 34556665554422 222 2344455555555566
Q ss_pred EEEecCCCcEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCee-----------EEEeccCCCcEEEEEEccCCCCCCCCC
Q 010754 392 KTFAGHQGEVNCVKWDPTGSLLA-SCSDDVTAKIWNMKQDKY-----------VHDLREHSKEIYTIRWSPTGSGTNNPN 459 (502)
Q Consensus 392 ~~~~~h~~~i~~l~~sp~g~~la-s~s~dg~i~iwd~~~~~~-----------~~~~~~h~~~i~~v~~sp~g~~~~~~~ 459 (502)
..+..... ...+.++|||++++ ++..+++|.|||+.+... +.......-.....+|.++|.
T Consensus 252 ~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~------ 324 (441)
T d1qnia2 252 RYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN------ 324 (441)
T ss_dssp EEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE------
T ss_pred EEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce------
Confidence 66665443 57899999999875 566799999999865221 111111111244568888886
Q ss_pred ccEEEEeecCceEEEEe
Q 010754 460 QQLILARLIPYFLYWIC 476 (502)
Q Consensus 460 ~~l~las~~~~~~iw~~ 476 (502)
.+.+...|..+..|..
T Consensus 325 -~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 325 -AYTTLFIDSQVCKWNI 340 (441)
T ss_dssp -EEEEETTTTEEEEEEH
T ss_pred -EEEcccccceEEEecc
Confidence 3444445677888863
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.97 E-value=1.1e-06 Score=80.67 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=142.5
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECC
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYD 295 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~d 295 (502)
..+..++|.++|+++++-...+.|..|+..+..... . . .........++++++|+++++...+
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~----------~---~----~~~~~~p~gla~~~dG~l~va~~~~ 102 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR----------P---F----VSHKANPAAIKIHKDGRLFVCYLGD 102 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE----------E---E----ECSSSSEEEEEECTTSCEEEEECTT
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEE----------E---E----eCCCCCeeEEEECCCCCEEEEecCC
Confidence 345689999999988887788989888876543210 0 0 1112357899999999988775432
Q ss_pred ----CeEEEEECCCceEEEecCc---cCCeEEEEEecCCCEEEEEec------CCeEEEEEcCCCceEEEEeeccCCeEE
Q 010754 296 ----GQARIWSTNGDLKCTLSKH---KGPIFSLKWNKKGDYLLTGSC------DKTAIVWDVKTEEWKQQFEFHSGPTLD 362 (502)
Q Consensus 296 ----g~i~iwd~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~ 362 (502)
+.|...+..+........+ ......+++.++|++.++... .+.+..++...+ .+..+...-.....
T Consensus 103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnG 181 (319)
T d2dg1a1 103 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANG 181 (319)
T ss_dssp SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEE
T ss_pred CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeee
Confidence 3455555554433333222 234678999999986665332 134555554433 33333333445678
Q ss_pred EEecCCC--EEEEEeCCCeEEEEEcCCCc-ceEEE-------ecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 010754 363 VDWRNNV--SFATSSTDNMIYVCKIGENR-PIKTF-------AGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKY 432 (502)
Q Consensus 363 v~~~~~~--~~~~~~~d~~i~i~d~~~~~-~~~~~-------~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~ 432 (502)
++|++++ .+++-+..+.|+.|++.... ..... .........|+++++|++.++....+.|.+|| ..++.
T Consensus 182 ia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~ 260 (319)
T d2dg1a1 182 IALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYP 260 (319)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCE
T ss_pred eeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcE
Confidence 9998765 34566678899999986432 11111 11123467899999999999888999999999 47888
Q ss_pred EEEec------cCCCcEEEEEEccCCC
Q 010754 433 VHDLR------EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 433 ~~~~~------~h~~~i~~v~~sp~g~ 453 (502)
+..+. ++...+++++|.|.+.
T Consensus 261 l~~i~~P~~~~~~~~~~~~~~~~~~~~ 287 (319)
T d2dg1a1 261 IGQILIPGRDEGHMLRSTHPQFIPGTN 287 (319)
T ss_dssp EEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred EEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence 87775 2334578999998776
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=8.8e-07 Score=78.86 Aligned_cols=193 Identities=12% Similarity=0.105 Sum_probs=119.5
Q ss_pred CCeEEEEECCCCCEEEEEECCC---eEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEec-CCe--EEEEEcCCCc
Q 010754 275 KDVTTLDWNGEGTLLATGSYDG---QARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSC-DKT--AIVWDVKTEE 348 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~--i~~wd~~~~~ 348 (502)
..+...+|||||+.||...... .+.+.+..+.....+..+........|+|+|..++.... ++. +..+......
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~ 118 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 118 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc
Confidence 4578899999999999876543 577777887777777788889999999999998886554 333 2333333332
Q ss_pred eEEEEeeccCCeEEEEecC--CCEEEEEeCCC--eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC-Cc--
Q 010754 349 WKQQFEFHSGPTLDVDWRN--NVSFATSSTDN--MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD-VT-- 421 (502)
Q Consensus 349 ~~~~~~~~~~~v~~v~~~~--~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d-g~-- 421 (502)
.... ...........+.. ...+++...++ .|.+.++..+.. ..+..+........|+|+++.++..+.+ +.
T Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 196 (269)
T d2hqsa1 119 IRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQH 196 (269)
T ss_dssp EEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEE
T ss_pred ceee-eeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCcee
Confidence 2222 22222333333433 23344554555 455556555433 3344456778888999999998877654 44
Q ss_pred EEEEECCCCeeEEEeccCCCcEEEEEEccCCCCCCCCCccEEEEee-cCceEEEEeee
Q 010754 422 AKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILARL-IPYFLYWICSI 478 (502)
Q Consensus 422 i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~g~~~~~~~~~l~las~-~~~~~iw~~~~ 478 (502)
|.+.+...+.. .+..+........|||||+ .|+..+. .+...+|...+
T Consensus 197 i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~-------~i~f~s~~~~~~~l~~~~~ 245 (269)
T d2hqsa1 197 IAKQDLATGGV--QVLSSTFLDETPSLAPNGT-------MVIYSSSQGMGSVLNLVST 245 (269)
T ss_dssp EEEEETTTCCE--EECCCSSSCEEEEECTTSS-------EEEEEEEETTEEEEEEEET
T ss_pred eeEeecccccc--eEeecCccccceEECCCCC-------EEEEEEcCCCCcEEEEEEC
Confidence 44445554443 3334555678889999998 5544443 34455665443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.87 E-value=6.4e-07 Score=83.97 Aligned_cols=240 Identities=6% Similarity=-0.021 Sum_probs=139.3
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS 293 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~ 293 (502)
+...+.-|+|+|++++|.+++. +.+..|.+...... ...... ........++++++++.++...
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~----------~~~~~~-----~~~~~p~~v~~~~~~~~~~v~~ 101 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEI----------VHEASH-----PIGGHPRANDADTNTRAIFLLA 101 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEE----------EEEEEE-----ECCSSGGGGCTTSCCEEEEEEE
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCe----------EEEeee-----cCCCCcEEEEECCCCCEEEEEE
Confidence 3445667999999999888765 56888877643210 011000 0112345666777777433322
Q ss_pred ---CCCeEEEEECC--Cce---------------EE-EecCccCCeEEEEEecCCCEEEEEec-CCeEEEEEcCCC-ceE
Q 010754 294 ---YDGQARIWSTN--GDL---------------KC-TLSKHKGPIFSLKWNKKGDYLLTGSC-DKTAIVWDVKTE-EWK 350 (502)
Q Consensus 294 ---~dg~i~iwd~~--~~~---------------~~-~~~~~~~~v~~l~~~~~~~~l~s~~~-d~~i~~wd~~~~-~~~ 350 (502)
..+.|..+.+. +.. .. ........+.++.|+|+|+++++++. ...|.+|+.... ...
T Consensus 102 a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~ 181 (365)
T d1jofa_ 102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred ecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCcee
Confidence 23455544321 110 00 11112234789999999999888765 457888876543 222
Q ss_pred E--EEee--ccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCCCcceEEEe-------------------cCCCcEEEEE
Q 010754 351 Q--QFEF--HSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENRPIKTFA-------------------GHQGEVNCVK 405 (502)
Q Consensus 351 ~--~~~~--~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~-------------------~h~~~i~~l~ 405 (502)
. .... .......+.|++++. +++...++.|.+|++..+....... .+......+.
T Consensus 182 ~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 261 (365)
T d1jofa_ 182 LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEE
T ss_pred eccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceE
Confidence 1 1111 245678899988765 4566678999999997764322211 1112356789
Q ss_pred EcCCCCEEEEEeC-C-----CcEEEEECCCCeeEEE------eccCCCcEEEEEEcc-CCCCCCCCCccEEEEe-ecCce
Q 010754 406 WDPTGSLLASCSD-D-----VTAKIWNMKQDKYVHD------LREHSKEIYTIRWSP-TGSGTNNPNQQLILAR-LIPYF 471 (502)
Q Consensus 406 ~sp~g~~las~s~-d-----g~i~iwd~~~~~~~~~------~~~h~~~i~~v~~sp-~g~~~~~~~~~l~las-~~~~~ 471 (502)
++|+|++|+++.. + +.|..|++.....+.. ..........++++| +|. .++++. .++.+
T Consensus 262 ~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~-------~l~va~~~s~~v 334 (365)
T d1jofa_ 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE-------WMAITDDQEGWL 334 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT-------EEEEECSSSCEE
T ss_pred ECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC-------EEEEEeCCCCeE
Confidence 9999999887642 2 2377777654322211 112334467799998 676 555553 45778
Q ss_pred EEEEe
Q 010754 472 LYWIC 476 (502)
Q Consensus 472 ~iw~~ 476 (502)
.+|..
T Consensus 335 ~v~~~ 339 (365)
T d1jofa_ 335 EIYRW 339 (365)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88854
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.72 E-value=4.1e-06 Score=76.44 Aligned_cols=196 Identities=11% Similarity=0.095 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCcccc-CCCCeEEEEECCCCCEEEEEEC--
Q 010754 218 VCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNE-KSKDVTTLDWNGEGTLLATGSY-- 294 (502)
Q Consensus 218 V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~s~~g~~l~s~~~-- 294 (502)
-..++|.++++.|+++.....+..++........ ......+ .-...+.+++.++|++.++-..
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~--------------~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~ 138 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEI--------------AKKDSEGRRMQGCNDCAFDYEGNLWITAPAGE 138 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEEC--------------CSBCTTSCBCBCCCEEEECTTSCEEEEECBCB
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEE--------------EeccccccccCCCcEEEECCCCCEEEecCccC
Confidence 4679999999988888777778888866542110 0000000 0123578899999998776432
Q ss_pred -------------CCeEEEEECCCceEEEecCccCCeEEEEEecCCC----EEE-EEecCCeEEEEEcCCCceEEE---E
Q 010754 295 -------------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGD----YLL-TGSCDKTAIVWDVKTEEWKQQ---F 353 (502)
Q Consensus 295 -------------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~----~l~-s~~~d~~i~~wd~~~~~~~~~---~ 353 (502)
.|.|..++.++...... ..-..-..++|+|+++ .|+ +-+..+.|..||+.....+.. +
T Consensus 139 ~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~ 217 (314)
T d1pjxa_ 139 VAPADYTRSMQEKFGSIYCFTTDGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVW 217 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTTSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEE
T ss_pred cccccccceeccCCceEEEEeecCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEE
Confidence 24566666666544333 2333447899998765 444 456678899998764433221 1
Q ss_pred eec----cCCeEEEEecCC-CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 010754 354 EFH----SGPTLDVDWRNN-VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGS-LLASCSDDVTAKIWNM 427 (502)
Q Consensus 354 ~~~----~~~v~~v~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~-~las~s~dg~i~iwd~ 427 (502)
... ....-.+++..+ +.+++....+.|.+||...+..+..+.......++++|.|+++ ++++.+.+|.|...++
T Consensus 218 ~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 218 GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 111 112456777554 4456666789999999988888777777777899999999987 5566677888877776
Q ss_pred C
Q 010754 428 K 428 (502)
Q Consensus 428 ~ 428 (502)
.
T Consensus 298 ~ 298 (314)
T d1pjxa_ 298 Q 298 (314)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.69 E-value=1.1e-06 Score=77.97 Aligned_cols=191 Identities=7% Similarity=0.019 Sum_probs=127.6
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDG 296 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg 296 (502)
....+++++++.++++....+.+++++-.+...... ........++++.++|+++++-..+.
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~------------------~~~~~~p~~iavd~~g~i~v~d~~~~ 119 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP------------------FDGLNYPEGLAVDTQGAVYVADRGNN 119 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC------------------CCSCCSEEEEEECTTCCEEEEEGGGT
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee------------------eeeeeecccccccccceeEeeccccc
Confidence 356789999999888877777777665443321100 01124578999999999888776777
Q ss_pred eEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCE-EEEE
Q 010754 297 QARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVS-FATS 374 (502)
Q Consensus 297 ~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~-~~~~ 374 (502)
.+..++..+....... .......+++++++++.+++...++.|..+|...................+++.+++. +++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd 199 (260)
T d1rwia_ 120 RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTE 199 (260)
T ss_dssp EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEE
T ss_pred cccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeee
Confidence 8888887665443332 2234457899999999888888889999999876543332223445567888866554 4555
Q ss_pred eCCCeEEEEEcCCCcceEEEe-cCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 375 STDNMIYVCKIGENRPIKTFA-GHQGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 375 ~~d~~i~i~d~~~~~~~~~~~-~h~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
...+.|..++...... ..+. ..-.....|+++++|+++++-..++.|+..+
T Consensus 200 ~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 200 HNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp TTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred cCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 5577888887654432 2222 2234678999999999888877777666554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.63 E-value=1.2e-05 Score=74.93 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=101.0
Q ss_pred CCeEEEEECCCCCEEEEEECC-CeEEEEECC--CceEE--E--ecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCC
Q 010754 275 KDVTTLDWNGEGTLLATGSYD-GQARIWSTN--GDLKC--T--LSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKT 346 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~d-g~i~iwd~~--~~~~~--~--~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~ 346 (502)
..+.++.|+|+|+++++++.. ..|.+|+.. +.... . ..........+.|+|+++++++.. .+++|.+|++..
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 458899999999998888753 578888754 22221 1 122345678999999999886554 588999999876
Q ss_pred CceEEEEeec-------------------cCCeEEEEecCCCEEEEEe--C-----CCeEEEEEcCCCcceEEE------
Q 010754 347 EEWKQQFEFH-------------------SGPTLDVDWRNNVSFATSS--T-----DNMIYVCKIGENRPIKTF------ 394 (502)
Q Consensus 347 ~~~~~~~~~~-------------------~~~v~~v~~~~~~~~~~~~--~-----d~~i~i~d~~~~~~~~~~------ 394 (502)
+......... ......+.++|++.++..+ . ...|..|++.....+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 6433221110 1124567788877644332 2 223777777654433221
Q ss_pred ecCCCcEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCe
Q 010754 395 AGHQGEVNCVKWDP-TGSLLASCS-DDVTAKIWNMKQDK 431 (502)
Q Consensus 395 ~~h~~~i~~l~~sp-~g~~las~s-~dg~i~iwd~~~~~ 431 (502)
........+++++| +|++|+.+. .++.|.+|+++...
T Consensus 305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 11234567799998 799887665 57899999876543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.59 E-value=7.3e-05 Score=67.15 Aligned_cols=220 Identities=10% Similarity=0.088 Sum_probs=147.2
Q ss_pred EEEEEcCC-CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCe
Q 010754 219 CACAWSPA-GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQ 297 (502)
Q Consensus 219 ~~~~~~p~-~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~ 297 (502)
-+..|++. +.++.+=-..+.|.-||..+++.. .. . ....+.++++.++|.++++ +.+ .
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-----------~~-~-------~~~~~~~i~~~~dg~l~va-~~~-g 79 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-----------VH-A-------LPFMGSALAKISDSKQLIA-SDD-G 79 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-----------EE-E-------CSSCEEEEEEEETTEEEEE-ETT-E
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-----------EE-E-------CCCCcEEEEEecCCCEEEE-EeC-c
Confidence 45678875 555555456688999998776421 00 0 1245889999999877765 444 5
Q ss_pred EEEEECCCceEEEecCc-----cCCeEEEEEecCCCEEEEEec----CCeEEEEEcCCCceEEEEeeccCCeEEEEecCC
Q 010754 298 ARIWSTNGDLKCTLSKH-----KGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNN 368 (502)
Q Consensus 298 i~iwd~~~~~~~~~~~~-----~~~v~~l~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~ 368 (502)
|.++|..+.....+... ...+..+.+.|+|++.++... .+.-.+|.+..++....+. .......+.|+++
T Consensus 80 l~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d 158 (295)
T d2ghsa1 80 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPD 158 (295)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTT
T ss_pred cEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCC
Confidence 88899876554444221 224788999999987766543 2345677776776554443 3345678888776
Q ss_pred CE--EEEEeCCCeEEEEEcCCCc------c--eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc
Q 010754 369 VS--FATSSTDNMIYVCKIGENR------P--IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE 438 (502)
Q Consensus 369 ~~--~~~~~~d~~i~i~d~~~~~------~--~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~ 438 (502)
.. +++-+..+.|+.|++.... . ...+.+..+....++++.+|++.++.-..+.|..|| ..++.+..+..
T Consensus 159 ~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~l 237 (295)
T d2ghsa1 159 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEV 237 (295)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEEC
T ss_pred CceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecC
Confidence 53 5566778899999875321 1 112223455688999999999888877888999999 56888888876
Q ss_pred CCCcEEEEEEc-cCCCCCCCCCccEEEEeec
Q 010754 439 HSKEIYTIRWS-PTGSGTNNPNQQLILARLI 468 (502)
Q Consensus 439 h~~~i~~v~~s-p~g~~~~~~~~~l~las~~ 468 (502)
....+++++|- |+.. .|++.|+.
T Consensus 238 P~~~~T~~~FGG~d~~-------~LyvTta~ 261 (295)
T d2ghsa1 238 PGKQTTCPAFIGPDAS-------RLLVTSAR 261 (295)
T ss_dssp SCSBEEEEEEESTTSC-------EEEEEEBC
T ss_pred CCCceEEEEEeCCCCC-------EEEEEECC
Confidence 66679999996 5655 56655553
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.58 E-value=1.7e-05 Score=70.82 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=116.2
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEe--cCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEE
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTL--SKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 352 (502)
.....+++.++|.++++....+.+.+++.++..+..+ ..+......+++.++++.+++....+.|.+||. .++.+..
T Consensus 114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~ 192 (279)
T d1q7fa_ 114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQ 192 (279)
T ss_dssp SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEE
T ss_pred cccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeec-CCceeee
Confidence 4578899999999888888888999999988877665 345567788999999988888888999999996 5666666
Q ss_pred Eee--ccCCeEEEEecCCCEEEEEe--CCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 010754 353 FEF--HSGPTLDVDWRNNVSFATSS--TDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSDDVTAKIWN 426 (502)
Q Consensus 353 ~~~--~~~~v~~v~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g~~las~s~dg~i~iwd 426 (502)
+.. .......|++.+++.++++. .++.|.+|+. +++.+.++... ......|++.|+|.+++ ++.++.|++|.
T Consensus 193 ~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 193 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEE
T ss_pred ecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEE
Confidence 632 33357788887766655553 3457888884 57777666433 34688999999997655 45788999999
Q ss_pred CCCCe
Q 010754 427 MKQDK 431 (502)
Q Consensus 427 ~~~~~ 431 (502)
..+..
T Consensus 271 ~~~~~ 275 (279)
T d1q7fa_ 271 YVQLA 275 (279)
T ss_dssp CSCCC
T ss_pred eeeec
Confidence 76543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.58 E-value=6.2e-06 Score=74.82 Aligned_cols=176 Identities=12% Similarity=0.094 Sum_probs=119.4
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCc--eEEEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEE--WKQQF 353 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~ 353 (502)
.+..++++|||+++++...++.|..|+..+... .+......+.+++|+++|+++++...++.+..|+..... .....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 107 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL 107 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence 588999999999999999999999999877643 444566788999999999998888888888888875432 22211
Q ss_pred e-eccCCeEEEEecCCCEEE-EEeCCCeEEEEEcCCCcceEEEe----------cCCCcEEEEEEcCCCCEEEEEeCCCc
Q 010754 354 E-FHSGPTLDVDWRNNVSFA-TSSTDNMIYVCKIGENRPIKTFA----------GHQGEVNCVKWDPTGSLLASCSDDVT 421 (502)
Q Consensus 354 ~-~~~~~v~~v~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~----------~h~~~i~~l~~sp~g~~las~s~dg~ 421 (502)
. ........+.+.+++.++ +.+.++.+..++...+....... ........+.++. +.++++.+..+.
T Consensus 108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~ 186 (302)
T d2p4oa1 108 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKML 186 (302)
T ss_dssp ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTE
T ss_pred ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCe
Confidence 1 234457888887766654 44667888888887664322221 1123466777764 345566677888
Q ss_pred EEEEECCCCeeEEEec--cCCCcEEEEEEccCCC
Q 010754 422 AKIWNMKQDKYVHDLR--EHSKEIYTIRWSPTGS 453 (502)
Q Consensus 422 i~iwd~~~~~~~~~~~--~h~~~i~~v~~sp~g~ 453 (502)
|+.++........... ........++|.++|.
T Consensus 187 i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~ 220 (302)
T d2p4oa1 187 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN 220 (302)
T ss_dssp EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC
T ss_pred EEeccccccccccccccccCCCCCcceEECCCCC
Confidence 8888876543221111 1223356789999987
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=9.2e-06 Score=78.36 Aligned_cols=216 Identities=11% Similarity=0.135 Sum_probs=131.2
Q ss_pred EEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE--------
Q 010754 222 AWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-------- 293 (502)
Q Consensus 222 ~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-------- 293 (502)
.|.+++.++.. ..+|.|.+|++.+++... +.....-....+....|||||++++...
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~--------------l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~ 87 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTV--------------LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEE--------------EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEE--------------EEcCccccccccceeEECCCCCeEEEEEcccceeEe
Confidence 58888776554 457889999998765311 1111111223577888999999988764
Q ss_pred -CCCeEEEEECCCceEEEecC---ccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeecc-CC---------
Q 010754 294 -YDGQARIWSTNGDLKCTLSK---HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHS-GP--------- 359 (502)
Q Consensus 294 -~dg~i~iwd~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~--------- 359 (502)
..+.+.++|+.......+.. ....+....|+|+|+.|+-.. ++.|.+.+..++..++...... ..
T Consensus 88 s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v 166 (465)
T d1xfda1 88 SYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (465)
T ss_dssp CCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred eccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchh
Confidence 35788999987655554432 234566789999999988764 6789999887776555433211 11
Q ss_pred --------eEEEEecCCCE-EEEEe-CCC---------------------------------eEEEEEcCCCcceEEE--
Q 010754 360 --------TLDVDWRNNVS-FATSS-TDN---------------------------------MIYVCKIGENRPIKTF-- 394 (502)
Q Consensus 360 --------v~~v~~~~~~~-~~~~~-~d~---------------------------------~i~i~d~~~~~~~~~~-- 394 (502)
-..+-|+|++. |+... .+. .+.++|+..+......
T Consensus 167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~ 246 (465)
T d1xfda1 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (465)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec
Confidence 24667888765 33332 122 2344444333221111
Q ss_pred ----ecCCCcEEEEEEcCCCCEEEEEeC-C---CcEEEEECCCCeeEEEeccC-CCcE----EEEEEccCCC
Q 010754 395 ----AGHQGEVNCVKWDPTGSLLASCSD-D---VTAKIWNMKQDKYVHDLREH-SKEI----YTIRWSPTGS 453 (502)
Q Consensus 395 ----~~h~~~i~~l~~sp~g~~las~s~-d---g~i~iwd~~~~~~~~~~~~h-~~~i----~~v~~sp~g~ 453 (502)
......+..+.|+|++++++.... + ..|.++|..++++...+..+ .+.| ....|+|+|.
T Consensus 247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~ 318 (465)
T d1xfda1 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGR 318 (465)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSC
T ss_pred cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCC
Confidence 011224778999999987665433 2 35888999999876554422 2211 3457888887
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=3.2e-05 Score=74.44 Aligned_cols=221 Identities=10% Similarity=0.114 Sum_probs=123.4
Q ss_pred ceEEEEEcCCCCeEEEEe---------CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 217 EVCACAWSPAGSLLASGS---------GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs---------~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
.+....||||+++++.+. ..+.+.++|+.++.... + .........+....|||||+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~--------------l-~~~~~~~~~l~~~~wSPDG~ 126 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--------------L-DPPEVSNAKLQYAGWGPKGQ 126 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--------------C-CCTTCCSCCCSBCCBCSSTT
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee--------------c-cCccCCccccceeeeccCCc
Confidence 566788999999887764 34677888888765321 1 01111223466688999999
Q ss_pred EEEEEECCCeEEEEECCCce-EEEe-cCccCC-----------------eEEEEEecCCCEEEEEecC-Ce---------
Q 010754 288 LLATGSYDGQARIWSTNGDL-KCTL-SKHKGP-----------------IFSLKWNKKGDYLLTGSCD-KT--------- 338 (502)
Q Consensus 288 ~l~s~~~dg~i~iwd~~~~~-~~~~-~~~~~~-----------------v~~l~~~~~~~~l~s~~~d-~~--------- 338 (502)
.||... ++.|.+.+..+.. .+.. .+.... -.++-|||+|++|+....| ..
T Consensus 127 ~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~ 205 (465)
T d1xfda1 127 QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY 205 (465)
T ss_dssp CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC
T ss_pred eEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccc
Confidence 998876 5778888765432 2222 222221 2477899999999986533 22
Q ss_pred ------------------------EEEEEcCCCceEEEEee------ccCCeEEEEecCCCEEEEEeCC-----CeEEEE
Q 010754 339 ------------------------AIVWDVKTEEWKQQFEF------HSGPTLDVDWRNNVSFATSSTD-----NMIYVC 383 (502)
Q Consensus 339 ------------------------i~~wd~~~~~~~~~~~~------~~~~v~~v~~~~~~~~~~~~~d-----~~i~i~ 383 (502)
+.++|+.++........ ...-+..+.|.+++.+++...+ ..|.++
T Consensus 206 ~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~ 285 (465)
T d1xfda1 206 TGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLC 285 (465)
T ss_dssp SSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEE
T ss_pred cccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEE
Confidence 33444433322111100 0112567889888876655332 257889
Q ss_pred EcCCCcceEEEecC-CCcE----EEEEEcCCCCEEE--EEe-CCC--cEEEEEC------CCCeeEEEeccCCCcEEEE-
Q 010754 384 KIGENRPIKTFAGH-QGEV----NCVKWDPTGSLLA--SCS-DDV--TAKIWNM------KQDKYVHDLREHSKEIYTI- 446 (502)
Q Consensus 384 d~~~~~~~~~~~~h-~~~i----~~l~~sp~g~~la--s~s-~dg--~i~iwd~------~~~~~~~~~~~h~~~i~~v- 446 (502)
|..+++....+..+ .+.| ....|+|+|+.++ ..+ .+| .++...+ ..++.+..+....=.|..+
T Consensus 286 d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~ 365 (465)
T d1xfda1 286 DATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKIL 365 (465)
T ss_dssp ETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEE
T ss_pred cCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEE
Confidence 99888765554432 2222 3467999998432 222 333 2333322 1233333343333345554
Q ss_pred EEccCCC
Q 010754 447 RWSPTGS 453 (502)
Q Consensus 447 ~~sp~g~ 453 (502)
+|.+++.
T Consensus 366 ~~d~~~~ 372 (465)
T d1xfda1 366 AYDEKGN 372 (465)
T ss_dssp EEETTTT
T ss_pred EEcCCCC
Confidence 5777765
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.28 E-value=0.00039 Score=62.98 Aligned_cols=177 Identities=10% Similarity=0.074 Sum_probs=111.8
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECCCceE-EEecCccCCeEEEEEecCCCEEEEEec----CCeEEEEEcCCCceE
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLK-CTLSKHKGPIFSLKWNKKGDYLLTGSC----DKTAIVWDVKTEEWK 350 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~ 350 (502)
.+..++|.++|++.++-...+.|..|+.++... ............|+++++|+.+++... .+.+...+..++...
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 467899999999877777889999999876543 334445567789999999987776543 234556665555544
Q ss_pred EEEeec--cCCeEEEEecCCCEEEEEeCCC-------eEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEE-EEEeCCC
Q 010754 351 QQFEFH--SGPTLDVDWRNNVSFATSSTDN-------MIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLL-ASCSDDV 420 (502)
Q Consensus 351 ~~~~~~--~~~v~~v~~~~~~~~~~~~~d~-------~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~l-as~s~dg 420 (502)
...... .....++.+.+++.+..+...+ .+..++... ..+..+...-...+.|+|+|+++.| ++-+..+
T Consensus 121 ~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~ 199 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTAN 199 (319)
T ss_dssp EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred eeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccCC
Confidence 433221 2346778887777776665432 344444333 3333333333457889999999866 4445678
Q ss_pred cEEEEECCCC-eeEEE-------eccCCCcEEEEEEccCCC
Q 010754 421 TAKIWNMKQD-KYVHD-------LREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 421 ~i~iwd~~~~-~~~~~-------~~~h~~~i~~v~~sp~g~ 453 (502)
.|+.|++... ..... ........-.|++.++|.
T Consensus 200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~ 240 (319)
T d2dg1a1 200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN 240 (319)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC
Confidence 9999987532 11111 111112346788888886
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.20 E-value=5.2e-05 Score=67.14 Aligned_cols=214 Identities=11% Similarity=0.078 Sum_probs=114.0
Q ss_pred eCCCceEEeccCCCceEEEEEcCCCCeEEEEeC-CC-----cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCC
Q 010754 203 IPNSDVTILEGHTSEVCACAWSPAGSLLASGSG-DS-----TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKD 276 (502)
Q Consensus 203 ~~~~~~~~l~~H~~~V~~~~~~p~~~~l~sgs~-dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (502)
+.....+.|..+.+.+...+|||||+.||..+. ++ .|.++++.++....... ...........
T Consensus 28 ~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~-----------~~~~~~~~~~~ 96 (281)
T d1k32a2 28 LKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY-----------FSGKSTGRRMF 96 (281)
T ss_dssp TTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC-----------CCEEEETTEEC
T ss_pred CCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee-----------cCCCccCcccc
Confidence 345566778888888999999999998886542 22 35666666554211000 00000111234
Q ss_pred eEEEEECCCCCEEEEEECC------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC-----------eE
Q 010754 277 VTTLDWNGEGTLLATGSYD------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK-----------TA 339 (502)
Q Consensus 277 v~~l~~s~~g~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~-----------~i 339 (502)
.....|+|+|+.|+..... ..+...+..+....... ......+.+.+.+..++...... ..
T Consensus 97 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (281)
T d1k32a2 97 TDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGK 174 (281)
T ss_dssp SEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCE
T ss_pred ccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccceeeecCCCeEEEeeccccceeeeeccCCcce
Confidence 6788999999998876432 23445555544443322 22223333333333333322221 12
Q ss_pred EEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCC--CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 340 IVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTD--NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 340 ~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
.++....... ..............+.++..+.....+ ..|+++|+.++............+ ..|+|||+.|+...
T Consensus 175 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~--~~~SpDG~~I~f~~ 251 (281)
T d1k32a2 175 IWIEVNSGAF-KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP--RHLNTDGRRILFSK 251 (281)
T ss_dssp EEEEEETTEE-EEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE--EEEEESSSCEEEEE
T ss_pred eeeeccccce-eeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecCCCccc--ccCcCCCCEEEEEe
Confidence 2222222222 222223334445555555544444433 357778887665433222222233 46899999887644
Q ss_pred CCCcEEEEECCCCeeE
Q 010754 418 DDVTAKIWNMKQDKYV 433 (502)
Q Consensus 418 ~dg~i~iwd~~~~~~~ 433 (502)
++.|+++|+.+++..
T Consensus 252 -~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 252 -GGSIYIFNPDTEKIE 266 (281)
T ss_dssp -TTEEEEECTTTCCEE
T ss_pred -CCEEEEEECCCCCEE
Confidence 678999999888754
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.14 E-value=0.00029 Score=62.10 Aligned_cols=206 Identities=7% Similarity=0.037 Sum_probs=108.1
Q ss_pred EEcCC--CCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-C---
Q 010754 222 AWSPA--GSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY-D--- 295 (502)
Q Consensus 222 ~~~p~--~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~-d--- 295 (502)
..+|+ |+.+|-.+. +.|.+.|+.+++.. .+ ..+...+...+|||||+.||.... +
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~--------------~L----t~~~~~~~~p~~SPDG~~iaf~~~~~~~~ 65 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR--------------KI----VSNLGVINNARFFPDGRKIAIRVMRGSSL 65 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE--------------EE----ECSSSEEEEEEECTTSSEEEEEEEESTTC
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE--------------EE----ecCCCcccCEEECCCCCEEEEEEeeCCCC
Confidence 45788 888887654 56878888876521 01 112345788999999999886542 2
Q ss_pred --CeEEEEECCCceEEEecCc-------cCCeEEEEEecCCCEEEEEecC------CeEEEEEcCCCceEEEEeeccCCe
Q 010754 296 --GQARIWSTNGDLKCTLSKH-------KGPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWKQQFEFHSGPT 360 (502)
Q Consensus 296 --g~i~iwd~~~~~~~~~~~~-------~~~v~~l~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~v 360 (502)
..|.+++..+.....+..+ ........|+|+|+.|+..... ..+...+...+..... .....
T Consensus 66 ~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 142 (281)
T d1k32a2 66 NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPA 142 (281)
T ss_dssp CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSC
T ss_pred CceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCcc
Confidence 2467777776665555332 2345678899999988865432 2355555554443221 22222
Q ss_pred EEEEecCCCEEEEEeCC------------CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCC--CcEEEEE
Q 010754 361 LDVDWRNNVSFATSSTD------------NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDD--VTAKIWN 426 (502)
Q Consensus 361 ~~v~~~~~~~~~~~~~d------------~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~d--g~i~iwd 426 (502)
..+.+.++..++..... ............. .....+........++++. ++.....+ ..|.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d 220 (281)
T d1k32a2 143 THILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTD 220 (281)
T ss_dssp SEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEE
T ss_pred ceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc-cceecccccccceEEEe
Confidence 22333333333222111 1111122222222 2222233444555666553 22333333 3577778
Q ss_pred CCCCeeEEEeccCCCcEEEEEEccCCC
Q 010754 427 MKQDKYVHDLREHSKEIYTIRWSPTGS 453 (502)
Q Consensus 427 ~~~~~~~~~~~~h~~~i~~v~~sp~g~ 453 (502)
+.+++.. .+..+. ......|||||.
T Consensus 221 ~~g~~~~-~lt~~~-~~~~~~~SpDG~ 245 (281)
T d1k32a2 221 LDGKDLR-KHTSFT-DYYPRHLNTDGR 245 (281)
T ss_dssp TTSCSCE-ECCCCC-SSCEEEEEESSS
T ss_pred CCCCceE-EeecCC-CcccccCcCCCC
Confidence 8766543 333222 223346999998
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.05 E-value=0.002 Score=57.39 Aligned_cols=185 Identities=11% Similarity=0.005 Sum_probs=115.1
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
...+.++++.++|.++++ +.+ .+.++|..+++.. .+.. .........++.+.+.|+|++.++...
T Consensus 58 ~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~-----------~l~~--~~~~~~~~~~nd~~vd~~G~iw~~~~~ 122 (295)
T d2ghsa1 58 PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLT-----------LHAE--LESDLPGNRSNDGRMHPSGALWIGTMG 122 (295)
T ss_dssp SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEE-----------EEEC--SSTTCTTEEEEEEEECTTSCEEEEEEE
T ss_pred CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceee-----------EEee--eecCCCcccceeeEECCCCCEEEEecc
Confidence 456788999888877665 454 4888998876531 1111 111112235888999999997776543
Q ss_pred C----CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEE-ecCCeEEEEEcCCC------ceEEEEe--eccCCeE
Q 010754 295 D----GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTG-SCDKTAIVWDVKTE------EWKQQFE--FHSGPTL 361 (502)
Q Consensus 295 d----g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~-~~d~~i~~wd~~~~------~~~~~~~--~~~~~v~ 361 (502)
. +.-.+|.........+...-.....++|+++++.++.+ +..+.|..|++... +...... ...+...
T Consensus 123 ~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pd 202 (295)
T d2ghsa1 123 RKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMD 202 (295)
T ss_dssp TTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEE
T ss_pred ccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccccccc
Confidence 2 34455554433333333334456889999999876654 55778998887421 1111111 1233466
Q ss_pred EEEecCCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEc-CCCCEEEE
Q 010754 362 DVDWRNNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWD-PTGSLLAS 415 (502)
Q Consensus 362 ~v~~~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~s-p~g~~las 415 (502)
.++...++. +++.-..+.|..||. .++.+..+.-....+++++|- |+.+.|..
T Consensus 203 G~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv 257 (295)
T d2ghsa1 203 GSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV 257 (295)
T ss_dssp EEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred ceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence 777755544 445556788999995 678888887666779999996 56655543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.51 E-value=0.024 Score=49.04 Aligned_cols=221 Identities=8% Similarity=-0.016 Sum_probs=133.3
Q ss_pred eccCCCceEEEEEcCCCCeEEEE-eCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEE
Q 010754 211 LEGHTSEVCACAWSPAGSLLASG-SGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLL 289 (502)
Q Consensus 211 l~~H~~~V~~~~~~p~~~~l~sg-s~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l 289 (502)
+..+...+.+++|.+..+.|... ..++.|+..++...... . +. ......+.++++..-+..|
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~-----------~---v~---~~~~~~p~~iAvD~~~~~l 93 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-----------T---II---RQDLGSPEGIALDHLGRTI 93 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-----------E---EE---CTTCCCEEEEEEETTTTEE
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE-----------E---EE---EeccccccEEEEeccCCeE
Confidence 33444567889999876666555 45677888777654321 0 00 0112357888888766666
Q ss_pred EEEE-CCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEEEEecC-C--eEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 290 ATGS-YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLLTGSCD-K--TAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 290 ~s~~-~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
+.+. ..+.|.+.++++.....+. ..-.....++++|...+++-.... + .|..-++............-.....++
T Consensus 94 Y~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~gla 173 (263)
T d1npea_ 94 FWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLT 173 (263)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEE
T ss_pred EEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEE
Confidence 6554 4579999999876554443 333567899999987777654332 2 344445544333332322334456777
Q ss_pred ec-CCCE-EEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC-CC
Q 010754 365 WR-NNVS-FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH-SK 441 (502)
Q Consensus 365 ~~-~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h-~~ 441 (502)
+. .++. +.+-...+.|...++........+.+.. ...+|++. .+.+..+-...+.|...|..+++.+..+..+ ..
T Consensus 174 iD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~ 251 (263)
T d1npea_ 174 FDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT 251 (263)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCC
T ss_pred EeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCC
Confidence 64 3344 4555677889999987655444444433 34678876 3444455556788999999888877666422 23
Q ss_pred cEEEEEEcc
Q 010754 442 EIYTIRWSP 450 (502)
Q Consensus 442 ~i~~v~~sp 450 (502)
..+.|+..+
T Consensus 252 ~~~gi~v~~ 260 (263)
T d1npea_ 252 RLYGITIAL 260 (263)
T ss_dssp CCCCEEEEC
T ss_pred CcceEEEeC
Confidence 444555544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.10 E-value=0.044 Score=49.99 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=73.8
Q ss_pred EEEEEcCCCCeEEEEeCCC-----------cEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 219 CACAWSPAGSLLASGSGDS-----------TARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 219 ~~~~~~p~~~~l~sgs~dg-----------~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
...+...+|++++.|+.+. .+.+||..+++.... .... ..+.......++.++|+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~--------~~~~------~~~~~~~~~~~~~~~g~ 88 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR--------TVTV------TKHDMFCPGISMDGNGQ 88 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC--------EEEE------CSCCCSSCEEEECTTSC
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec--------CCCC------CCcccceeEEEEecCCc
Confidence 3344456788888887531 367899988764210 0010 11122234567889999
Q ss_pred EEEEEECC-CeEEEEECCCceEEEecCcc--CCeEEEEEecCCCEEEEEecC------CeEEEEEcCCCceE
Q 010754 288 LLATGSYD-GQARIWSTNGDLKCTLSKHK--GPIFSLKWNKKGDYLLTGSCD------KTAIVWDVKTEEWK 350 (502)
Q Consensus 288 ~l~s~~~d-g~i~iwd~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~ 350 (502)
+++.|+.+ ..+.+||............. ..-.+.+..++|+.++.++.+ ..+.+||..+.++.
T Consensus 89 i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 89 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred EEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence 99988766 58999998765544433221 122356667889998888753 36899998877643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.084 Score=45.46 Aligned_cols=216 Identities=7% Similarity=-0.092 Sum_probs=125.3
Q ss_pred EeccCCCceEEEEEcCCCCeEEEEe-CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCE
Q 010754 210 ILEGHTSEVCACAWSPAGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTL 288 (502)
Q Consensus 210 ~l~~H~~~V~~~~~~p~~~~l~sgs-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~ 288 (502)
.+......+.+++|++..+.|.-.. ..+.|.-.++....... ...... ......+..|++.+.+..
T Consensus 24 ~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~----------~~~~~~---~~~~~~p~glAvD~~~~~ 90 (266)
T d1ijqa1 24 SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS----------SYDTVI---SRDIQAPDGLAVDWIHSN 90 (266)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CEEEE---CSSCSCCCEEEEETTTTE
T ss_pred eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc----------ceEEEE---eCCCCCcceEEEeeccce
Confidence 3334456678999999777666554 45556655554321100 000000 111234667888776666
Q ss_pred EEEEE-CCCeEEEEECCCceEEE-ecCccCCeEEEEEecCCCEEEEEe--cCCeEEEEEcCCCceEEEEeeccCCeEEEE
Q 010754 289 LATGS-YDGQARIWSTNGDLKCT-LSKHKGPIFSLKWNKKGDYLLTGS--CDKTAIVWDVKTEEWKQQFEFHSGPTLDVD 364 (502)
Q Consensus 289 l~s~~-~dg~i~iwd~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~ 364 (502)
|+.+. ..+.|.+.++++..... ..........++++|...+|.-.. ..+.|...++............-.....++
T Consensus 91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~ 170 (266)
T d1ijqa1 91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT 170 (266)
T ss_dssp EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence 66554 55789999998765443 344445678999999666665443 345677777755444333333334556777
Q ss_pred ecC--CCEEEEEeCCCeEEEEEcCCCcceEEEecC--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccC
Q 010754 365 WRN--NVSFATSSTDNMIYVCKIGENRPIKTFAGH--QGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREH 439 (502)
Q Consensus 365 ~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h--~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h 439 (502)
+.+ +..+.+-...+.|...++............ .....+|++. .+.+..+-..++.|+..+..+++....+...
T Consensus 171 iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~ 248 (266)
T d1ijqa1 171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAEN 248 (266)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEECS
T ss_pred eeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEEcC
Confidence 653 334555566789999998765443333332 2346678877 3444555556788888887777666555543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.78 E-value=0.21 Score=46.28 Aligned_cols=221 Identities=14% Similarity=0.137 Sum_probs=118.0
Q ss_pred cCCCceEEEEEcCCCCeEEEEe-CC----CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCC
Q 010754 213 GHTSEVCACAWSPAGSLLASGS-GD----STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGT 287 (502)
Q Consensus 213 ~H~~~V~~~~~~p~~~~l~sgs-~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~ 287 (502)
++.-.+..++++|+++++|.+- .+ .+++++|+.+++.+. ..+.. .....++|.+|++
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~---------~~i~~---------~~~~~~~W~~D~~ 183 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP---------DVLER---------VKFSCMAWTHDGK 183 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE---------EEEEE---------ECSCCEEECTTSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecc---------ccccc---------ccccceEEcCCCC
Confidence 4444456678899999887542 22 469999999986321 01100 1125688999999
Q ss_pred EEEEEECC----------------CeEEEEECCC---ceEEEecCcc--CCeEEEEEecCCCEEEEEec---CCe--EEE
Q 010754 288 LLATGSYD----------------GQARIWSTNG---DLKCTLSKHK--GPIFSLKWNKKGDYLLTGSC---DKT--AIV 341 (502)
Q Consensus 288 ~l~s~~~d----------------g~i~iwd~~~---~~~~~~~~~~--~~v~~l~~~~~~~~l~s~~~---d~~--i~~ 341 (502)
.|+-...+ ..|..|.+.. .....+.... ..+..+..++++++++.... +.. +.+
T Consensus 184 ~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~ 263 (430)
T d1qfma1 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (430)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEE
Confidence 87765432 2566776553 2233343333 34667778899998775332 333 444
Q ss_pred EEcCCCc--------eEEEEeeccCCeEEEEecCCCEEEEEe---CCCeEEEEEcCCCcc--eEEE-ecCCCcEEEEEEc
Q 010754 342 WDVKTEE--------WKQQFEFHSGPTLDVDWRNNVSFATSS---TDNMIYVCKIGENRP--IKTF-AGHQGEVNCVKWD 407 (502)
Q Consensus 342 wd~~~~~--------~~~~~~~~~~~v~~v~~~~~~~~~~~~---~d~~i~i~d~~~~~~--~~~~-~~h~~~i~~l~~s 407 (502)
.|+.... ....+........-+....+..++... .++.|...++..... ...+ ..+...+..-.+.
T Consensus 264 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~ 343 (430)
T d1qfma1 264 CDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVAC 343 (430)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEE
T ss_pred eeCCCcccccccccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEE
Confidence 4543221 122222223333333333333333332 346677777765432 2333 3344545444444
Q ss_pred CCCCEEEEE-eCCC--cEEEEECCCCeeEEEeccCCCcEEEEEEccC
Q 010754 408 PTGSLLASC-SDDV--TAKIWNMKQDKYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 408 p~g~~las~-s~dg--~i~iwd~~~~~~~~~~~~h~~~i~~v~~sp~ 451 (502)
..+.+|+.. ..++ .|++++..+++.........+.|..+...++
T Consensus 344 ~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~ 390 (430)
T d1qfma1 344 VRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKK 390 (430)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTT
T ss_pred EECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCC
Confidence 445555544 4554 4888998887765544444444554444343
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.29 Score=41.82 Aligned_cols=158 Identities=10% Similarity=0.051 Sum_probs=99.8
Q ss_pred CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEe-cCCeEEEEEcCCCc---eEEE-Eeec--cCCeEEEEecCC
Q 010754 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGS-CDKTAIVWDVKTEE---WKQQ-FEFH--SGPTLDVDWRNN 368 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~-~d~~i~~wd~~~~~---~~~~-~~~~--~~~v~~v~~~~~ 368 (502)
..|+..++++.....+......+.++.|++..+.|+-.. ..+.|.-.++.... .... +... ...-.+++|..+
T Consensus 10 ~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence 458888888765555545556678999998887776554 45667766664321 1111 2211 122356777888
Q ss_pred CEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeccCCCcEEEE
Q 010754 369 VSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS--DDVTAKIWNMKQDKYVHDLREHSKEIYTI 446 (502)
Q Consensus 369 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s--~dg~i~iwd~~~~~~~~~~~~h~~~i~~v 446 (502)
..+.+-...+.|.++++........+.........++++|...+|.... ..+.|.-.++............-....++
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEE
Confidence 8888888889999999987765555555567789999999766655443 23456666665443333333333456788
Q ss_pred EEccCCC
Q 010754 447 RWSPTGS 453 (502)
Q Consensus 447 ~~sp~g~ 453 (502)
++.+.+.
T Consensus 170 ~iD~~~~ 176 (266)
T d1ijqa1 170 TLDLLSG 176 (266)
T ss_dssp EEETTTT
T ss_pred Eeecccc
Confidence 8887665
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.06 E-value=0.37 Score=41.35 Aligned_cols=210 Identities=16% Similarity=0.219 Sum_probs=136.0
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 010754 220 ACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSYDGQAR 299 (502)
Q Consensus 220 ~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~dg~i~ 299 (502)
+.-.+|..+.||.-+. .++.|+|+++..... ... ...+|.--.|-.+. .|+..+ +..|+
T Consensus 67 sAIMhP~~~IiALrag-~~LQiFnletK~klk-------------s~~-----~~e~VvfWkWis~~-~L~lVT-~taVY 125 (327)
T d1utca2 67 SAIMNPASKVIALKAG-KTLQIFNIEMKSKMK-------------AHT-----MTDDVTFWKWISLN-TVALVT-DNAVY 125 (327)
T ss_dssp EEEECSSSSEEEEEET-TEEEEEETTTTEEEE-------------EEE-----CSSCCCEEEESSSS-EEEEEC-SSEEE
T ss_pred hhhcCCCCcEEEEecC-CeEEEEehhHhhhhc-------------eEE-----cCCCcEEEEecCCC-EEEEEc-CCceE
Confidence 4456788887777764 689999999865321 111 12457777776554 444444 47899
Q ss_pred EEECCC--ceEEEecCcc----CCeEEEEEecCCCEEEEEe-------cCCeEEEEEcCCCceEEEEeeccCCeEEEEec
Q 010754 300 IWSTNG--DLKCTLSKHK----GPIFSLKWNKKGDYLLTGS-------CDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR 366 (502)
Q Consensus 300 iwd~~~--~~~~~~~~~~----~~v~~l~~~~~~~~l~s~~-------~d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~ 366 (502)
-|++++ .....+..|. ..|..-+.+++.++++..+ -.|.+.+|..+. +.-+.+.+|...-..+...
T Consensus 126 HW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~ 204 (327)
T d1utca2 126 HWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKME 204 (327)
T ss_dssp EEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCT
T ss_pred EEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcC
Confidence 999864 4555555543 4677778888999877543 236788998764 4456677776555554442
Q ss_pred CC----CEEEEE---eCCCeEEEEEcCCCc----c--eE---EEec---CCCcEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 010754 367 NN----VSFATS---STDNMIYVCKIGENR----P--IK---TFAG---HQGEVNCVKWDPTGSLLASCSDDVTAKIWNM 427 (502)
Q Consensus 367 ~~----~~~~~~---~~d~~i~i~d~~~~~----~--~~---~~~~---h~~~i~~l~~sp~g~~las~s~dg~i~iwd~ 427 (502)
.+ ..|+.+ ...+++++.++.... + .+ .+.. -.+-..++..++.-..+..-+.-|.|++||+
T Consensus 205 g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDl 284 (327)
T d1utca2 205 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL 284 (327)
T ss_dssp TCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred CCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEc
Confidence 22 123222 233689999987632 1 11 1111 1344668888988889999999999999999
Q ss_pred CCCeeEEEeccCCCcEEEEEEccC
Q 010754 428 KQDKYVHDLREHSKEIYTIRWSPT 451 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~sp~ 451 (502)
.++.++..-+-...+|...+-...
T Consensus 285 eTgt~i~~nRIs~~~iF~~a~~~~ 308 (327)
T d1utca2 285 ETGTCIYMNRISGETIFVTAPHEA 308 (327)
T ss_dssp TTCCEEEEEECCSSCEEEEEEETT
T ss_pred ccccEEEEeecCCCceEEeccCCC
Confidence 999999877766667765554444
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.38 Score=41.03 Aligned_cols=173 Identities=12% Similarity=0.010 Sum_probs=108.0
Q ss_pred CeEEEEECCCCCEEEEEE-CCCeEEEEECCCceEEEec-CccCCeEEEEEecCCCEEE-EEecCCeEEEEEcCCCceEEE
Q 010754 276 DVTTLDWNGEGTLLATGS-YDGQARIWSTNGDLKCTLS-KHKGPIFSLKWNKKGDYLL-TGSCDKTAIVWDVKTEEWKQQ 352 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~ 352 (502)
.+.+|+|.+..+.|+... .++.|+..++++.....+. .....+.++++..-+..|+ +-...+.|.+.++........
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence 377899998877777665 4578888888865444433 3335678999987666665 444567999999876654333
Q ss_pred EeeccCCeEEEEecCC-CEE-EEEeC--CCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 010754 353 FEFHSGPTLDVDWRNN-VSF-ATSST--DNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASC-SDDVTAKIWNM 427 (502)
Q Consensus 353 ~~~~~~~v~~v~~~~~-~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~-s~dg~i~iwd~ 427 (502)
+......+..++..|. +.+ .+-.. ...|.-.++............-...++|++++.++.|..+ ...+.|...++
T Consensus 117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~ 196 (263)
T d1npea_ 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (263)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence 3333456777777553 333 33322 2235555565444333333334567899999888777555 45788999998
Q ss_pred CCCeeEEEeccCCCcEEEEEEc
Q 010754 428 KQDKYVHDLREHSKEIYTIRWS 449 (502)
Q Consensus 428 ~~~~~~~~~~~h~~~i~~v~~s 449 (502)
........+.+... ..+|++.
T Consensus 197 ~g~~~~~v~~~~~~-P~~lav~ 217 (263)
T d1npea_ 197 AQPGRRKVLEGLQY-PFAVTSY 217 (263)
T ss_dssp TEEEEEEEEECCCS-EEEEEEE
T ss_pred CCCCeEEEECCCCC-cEEEEEE
Confidence 76554444443333 3567765
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.94 E-value=0.51 Score=41.93 Aligned_cols=198 Identities=17% Similarity=0.262 Sum_probs=108.9
Q ss_pred CCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEE-C-C--CeEEE
Q 010754 225 PAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGS-Y-D--GQARI 300 (502)
Q Consensus 225 p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~-~-d--g~i~i 300 (502)
|..++++.....+-|.+||+. ++.+.....+.++-..+ ...+.+.....-+++++ . + ..|.+
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDv-------------r~~~~l~~~~~di~vasnR~~~~~~l~~ 103 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDI-------------RYDFPLNGKKVDIAAASNRSEGKNTIEI 103 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEE-------------EEEEEETTEEEEEEEEEECCTTTCEEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCcccc-------------ccccccCCcceEEEEEeCCcCcceeEEE
Confidence 345677777777779999996 44333222222211111 11122222223345554 2 2 35777
Q ss_pred EECC--CceEEEecCc-------cCCeEEEEE--ecC-CC-EEEEEecCCeEEEEEcC---CC----ceEEEEeeccCCe
Q 010754 301 WSTN--GDLKCTLSKH-------KGPIFSLKW--NKK-GD-YLLTGSCDKTAIVWDVK---TE----EWKQQFEFHSGPT 360 (502)
Q Consensus 301 wd~~--~~~~~~~~~~-------~~~v~~l~~--~~~-~~-~l~s~~~d~~i~~wd~~---~~----~~~~~~~~~~~~v 360 (502)
|.+. ......+... ...++.+|+ ++. +. ++++...+|.+..|.+. .+ +.++.+. ....+
T Consensus 104 ~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~ 182 (353)
T d1h6la_ 104 YAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQT 182 (353)
T ss_dssp EEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCE
T ss_pred EEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCcc
Confidence 7754 2333333221 124677887 554 44 56677788999888763 23 2334444 33456
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEEcCCC-----cceEEEec--CCCcEEEEEEcC--C--CCEEEEEeCCCcEEEEECC
Q 010754 361 LDVDWRN-NVSFATSSTDNMIYVCKIGEN-----RPIKTFAG--HQGEVNCVKWDP--T--GSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 361 ~~v~~~~-~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~--h~~~i~~l~~sp--~--g~~las~s~dg~i~iwd~~ 428 (502)
-.|.+.+ .+.|..+-.+..|+.++.... ..+....+ ....+-.|++-. + |-+|+|.-.+++..|||..
T Consensus 183 EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~ 262 (353)
T d1h6la_ 183 EGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ 262 (353)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence 6666654 467788878877777766422 12222222 345677777543 2 3455555568899999987
Q ss_pred C-CeeEEEec
Q 010754 429 Q-DKYVHDLR 437 (502)
Q Consensus 429 ~-~~~~~~~~ 437 (502)
+ .+.+..|+
T Consensus 263 ~~~~~~g~F~ 272 (353)
T d1h6la_ 263 GQNKYVADFQ 272 (353)
T ss_dssp TTCCEEEEEE
T ss_pred CCccccceEE
Confidence 6 46665554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.62 E-value=0.58 Score=40.14 Aligned_cols=193 Identities=8% Similarity=0.088 Sum_probs=113.6
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC-
Q 010754 216 SEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY- 294 (502)
Q Consensus 216 ~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~- 294 (502)
..|.--.|- +.+.|+..+. ..|.-|+++... .|. +.+..+..-....|..-..+++++.++..+-
T Consensus 103 e~VvfWkWi-s~~~L~lVT~-taVYHW~~~g~s-------~P~-----k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~ 168 (327)
T d1utca2 103 DDVTFWKWI-SLNTVALVTD-NAVYHWSMEGES-------QPV-----KMFDRHSSLAGCQIINYRTDAKQKWLLLTGIS 168 (327)
T ss_dssp SCCCEEEES-SSSEEEEECS-SEEEEEESSSSC-------CCE-----EEEECCGGGTTCEEEEEEECTTSCEEEEEEEE
T ss_pred CCcEEEEec-CCCEEEEEcC-CceEEEcccCCC-------Cch-----hhhhhcccccCceEEEEEECCCCCEEEEEeEe
Confidence 455555666 3445666544 579999985421 111 1122222223567888888999997766542
Q ss_pred ------CCeEEEEECCCceEEEecCccCCeEEEEEecCC---CEEEEE---ecCCeEEEEEcCCCc---e---EEEEee-
Q 010754 295 ------DGQARIWSTNGDLKCTLSKHKGPIFSLKWNKKG---DYLLTG---SCDKTAIVWDVKTEE---W---KQQFEF- 355 (502)
Q Consensus 295 ------dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~---~~l~s~---~~d~~i~~wd~~~~~---~---~~~~~~- 355 (502)
.|.+.+|+.+.+..+.+.+|.+....+.+.-+. +.|+.+ ...+.+.+.++.... . .+....
T Consensus 169 ~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~ 248 (327)
T d1utca2 169 AQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF 248 (327)
T ss_dssp EETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECC
T ss_pred cCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEE
Confidence 278899999999989999887766666553221 233322 223578888875421 1 111111
Q ss_pred -----ccCCeEEEEecC-CCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcE
Q 010754 356 -----HSGPTLDVDWRN-NVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTA 422 (502)
Q Consensus 356 -----~~~~v~~v~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i 422 (502)
..+-..++..++ .+.+..-+.-|.|++||+.++.++..-+-....|...+-+.+..=++....+|.|
T Consensus 249 fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqV 321 (327)
T d1utca2 249 FPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 321 (327)
T ss_dssp CCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEE
T ss_pred CCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeE
Confidence 112233444433 4567778899999999999999887776656666544444443333344445543
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.78 Score=41.18 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=88.7
Q ss_pred CeEEEEECCCCCEEEEEECCCeEEEEECC-----------C-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEE
Q 010754 276 DVTTLDWNGEGTLLATGSYDGQARIWSTN-----------G-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWD 343 (502)
Q Consensus 276 ~v~~l~~s~~g~~l~s~~~dg~i~iwd~~-----------~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd 343 (502)
...-+++++...++++|+.++ +.|..+. + ...... .-..|..++|+-+ .|++ ..++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v-~~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLV-STRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEE-EESSEEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEE-EeCCCEEEEE
Confidence 466778888777888888775 5566521 1 111111 1235888999744 4554 4566788888
Q ss_pred cCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEec-----CCCcEEEEEEcCCCCEEEEEeC
Q 010754 344 VKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAG-----HQGEVNCVKWDPTGSLLASCSD 418 (502)
Q Consensus 344 ~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----h~~~i~~l~~sp~g~~las~s~ 418 (502)
..+-...........++..+.+.+. .++....++.+.++++..+.......+ -.+.+.+++|++.|..++++..
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g 190 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRN 190 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred eeccccccccccccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence 8765555555555667888888775 466677889999999988764322211 1355778888888887777643
Q ss_pred C
Q 010754 419 D 419 (502)
Q Consensus 419 d 419 (502)
+
T Consensus 191 ~ 191 (381)
T d1xipa_ 191 G 191 (381)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.39 E-value=0.93 Score=41.02 Aligned_cols=188 Identities=12% Similarity=0.062 Sum_probs=106.5
Q ss_pred EEEECC---CCCEEEEEE-CCCeEEEEECCCceEEE--ecCccCCeEEEEEec--CCCEEEEEecCC-------------
Q 010754 279 TLDWNG---EGTLLATGS-YDGQARIWSTNGDLKCT--LSKHKGPIFSLKWNK--KGDYLLTGSCDK------------- 337 (502)
Q Consensus 279 ~l~~s~---~g~~l~s~~-~dg~i~iwd~~~~~~~~--~~~~~~~v~~l~~~~--~~~~l~s~~~d~------------- 337 (502)
.+++.. ||++|++.. .++.|.+-|++...... .......+..++..+ +..|++.++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 555544 788888876 56899999987644322 223344566666654 556777766532
Q ss_pred -----eEEEEEcCCCceEEEEeeccCCeEEEEecCCCEE--EEEeCCC--------------eEE---------------
Q 010754 338 -----TAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF--ATSSTDN--------------MIY--------------- 381 (502)
Q Consensus 338 -----~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~--~~~~~d~--------------~i~--------------- 381 (502)
.+.++|..+++...++.... ....+.+++++.+ +++.... .+.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 36788999888777665433 3445666555442 2321110 123
Q ss_pred --------EEEcCC--C-cceEEEecCCCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe-----------eE-EEec
Q 010754 382 --------VCKIGE--N-RPIKTFAGHQGEVNCVKWDPTGSLLASCSD-DVTAKIWNMKQDK-----------YV-HDLR 437 (502)
Q Consensus 382 --------i~d~~~--~-~~~~~~~~h~~~i~~l~~sp~g~~las~s~-dg~i~iwd~~~~~-----------~~-~~~~ 437 (502)
+.|.+. + ..+..+. -......+.++|||+++++++. +.++.|+|+++-. .+ ....
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 333322 1 1122222 1123457899999999877765 8999999986421 11 1111
Q ss_pred cCCCcEEEEEEccCCCCCCCCCccEEEEeecCceEEEEe
Q 010754 438 EHSKEIYTIRWSPTGSGTNNPNQQLILARLIPYFLYWIC 476 (502)
Q Consensus 438 ~h~~~i~~v~~sp~g~~~~~~~~~l~las~~~~~~iw~~ 476 (502)
..-.-...+|...|. -..+--.|..+.-|..
T Consensus 327 -lglgPLht~fd~~g~-------aytslfids~v~kw~~ 357 (459)
T d1fwxa2 327 -LGLGPLHTAFDGRGN-------AYTSLFLDSQVVKWNI 357 (459)
T ss_dssp -CCSCEEEEEECTTSE-------EEEEETTTTEEEEEEH
T ss_pred -cCcCccccccCCCce-------EEEEeeccceEEEEec
Confidence 222344567877765 1122225677777864
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.26 E-value=0.88 Score=41.16 Aligned_cols=186 Identities=9% Similarity=0.053 Sum_probs=106.6
Q ss_pred CCCeEEEEe-CCCcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECC--CCCEEEEEECC-------
Q 010754 226 AGSLLASGS-GDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNG--EGTLLATGSYD------- 295 (502)
Q Consensus 226 ~~~~l~sgs-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--~g~~l~s~~~d------- 295 (502)
||++|+... .+.+|.+-|+.+.+..... ..+....+..++..+ +-.+++.++.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi----------------~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pnd 161 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAIL----------------EIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND 161 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEE----------------ECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEE----------------ecCCCCCCceeecccCCCeEEEEccCccccccCCC
Confidence 678777665 5788999999887642100 011233455555544 44566666653
Q ss_pred -----------CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCC---------------eEEEEE------
Q 010754 296 -----------GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDK---------------TAIVWD------ 343 (502)
Q Consensus 296 -----------g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~---------------~i~~wd------ 343 (502)
+.+.++|.....+..-..-.+....+.++++|+++++.+.+. .+.+++
T Consensus 162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~ 241 (459)
T d1fwxa2 162 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 241 (459)
T ss_dssp SSSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred CccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHH
Confidence 235677876544433222344567889999999999877542 133333
Q ss_pred -----------------cCC--C-ceEEEEeeccCCeEEEEecCCCE--EEEEeCCCeEEEEEcCCCc--------c---
Q 010754 344 -----------------VKT--E-EWKQQFEFHSGPTLDVDWRNNVS--FATSSTDNMIYVCKIGENR--------P--- 390 (502)
Q Consensus 344 -----------------~~~--~-~~~~~~~~~~~~v~~v~~~~~~~--~~~~~~d~~i~i~d~~~~~--------~--- 390 (502)
.+. + ..+..+.. ......+..+|++. ++++..+.++.++|++.-. +
T Consensus 242 av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 242 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp HHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred hhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 221 0 11111111 11233456667665 4455568899999986421 1
Q ss_pred eEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 010754 391 IKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMK 428 (502)
Q Consensus 391 ~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~ 428 (502)
+..-....-.....+|+..|.-..|.--|..|.-|++.
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence 11111122345567899888666666679999999974
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.87 Score=40.83 Aligned_cols=184 Identities=14% Similarity=0.063 Sum_probs=97.9
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCcc--CCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEEEC
Q 010754 217 EVCACAWSPAGSLLASGSGDSTARIWTIADGTSN--GGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATGSY 294 (502)
Q Consensus 217 ~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~~~ 294 (502)
...-++.++...+|+.|+.++ ++|-.+..-... ......... ... .-..|..++|+.+ .|+...
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~--~~~--------~ip~v~~vafs~d--~l~v~~- 103 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK--WEK--------EIPDVIFVCFHGD--QVLVST- 103 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS--EEE--------ECTTEEEEEEETT--EEEEEE-
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcce--ecc--------CCCCeEEEEeeCC--EEEEEe-
Confidence 355678888777888888875 667664321100 000000000 000 0125889999755 455544
Q ss_pred CCeEEEEECCC-ceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEe-----eccCCeEEEEecCC
Q 010754 295 DGQARIWSTNG-DLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFE-----FHSGPTLDVDWRNN 368 (502)
Q Consensus 295 dg~i~iwd~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~v~~~~~ 368 (502)
++.+..++... ...........++..+.++|. .++....++.+.++++..+....... .-.+.+.+++|+++
T Consensus 104 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~k 181 (381)
T d1xipa_ 104 RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDR 181 (381)
T ss_dssp SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTS
T ss_pred CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCC
Confidence 46677777543 222233334567888888874 57777889999999998886543221 12244556666555
Q ss_pred CE-EEEEeCCCeEEE-EEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEe
Q 010754 369 VS-FATSSTDNMIYV-CKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCS 417 (502)
Q Consensus 369 ~~-~~~~~~d~~i~i-~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s 417 (502)
+. ++++.. +...+ -++.....+.........|.+|.|-.+..++++-+
T Consensus 182 gkq~v~~~g-~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 182 SFQSFAWRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp CEEEEEEET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cEEEEEeCC-CceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 54 333321 11111 11111111100011234688899987777766553
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.92 E-value=1.1 Score=39.50 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=83.6
Q ss_pred EEEEECCCCCEEEEEEC------------CCeEEEEECCCc--eEEEe--cCc-----cCCeEEEEE--ecCCC-EEEEE
Q 010754 278 TTLDWNGEGTLLATGSY------------DGQARIWSTNGD--LKCTL--SKH-----KGPIFSLKW--NKKGD-YLLTG 333 (502)
Q Consensus 278 ~~l~~s~~g~~l~s~~~------------dg~i~iwd~~~~--~~~~~--~~~-----~~~v~~l~~--~~~~~-~l~s~ 333 (502)
-.|...|+|..+++++. .|.|.++|++.. ....+ .+. .-....+.. .++|. +|++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35677788877766542 388999997642 11111 111 112234443 34555 34444
Q ss_pred e---cCCeEEEEEcCCCce-EE---EEee-ccCCeEEEEecCCCEEEEEeC----------------CCeEEEEEcCCCc
Q 010754 334 S---CDKTAIVWDVKTEEW-KQ---QFEF-HSGPTLDVDWRNNVSFATSST----------------DNMIYVCKIGENR 389 (502)
Q Consensus 334 ~---~d~~i~~wd~~~~~~-~~---~~~~-~~~~v~~v~~~~~~~~~~~~~----------------d~~i~i~d~~~~~ 389 (502)
. ...+|-+|++..... +. ++.. ......++...+++.|+.... -+...+|....+.
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 3 356788888754332 11 1211 122467787766666555421 1223344444333
Q ss_pred ceEEEecCCCcEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe
Q 010754 390 PIKTFAGHQGEVNCVKWDPTGSLLASCS-DDVTAKIWNMKQDK 431 (502)
Q Consensus 390 ~~~~~~~h~~~i~~l~~sp~g~~las~s-~dg~i~iwd~~~~~ 431 (502)
. ......-...+.|+++|++++|+.+. ..+.|++|++....
T Consensus 198 ~-~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 198 V-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp E-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred e-EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 2 22222345689999999998776554 57889999886543
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.88 E-value=0.0043 Score=41.17 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=28.3
Q ss_pred chhhHHHHHHHHhcCCcchhhcccccccCc
Q 010754 7 EELNYLVFRYLQESGLLHSAFVLGYEAGIN 36 (502)
Q Consensus 7 ~evn~li~rYlqE~g~~~sA~~~~~e~~~~ 36 (502)
+|+|.-|..||+..||..+|-+|.+|..++
T Consensus 8 eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~ 37 (76)
T d1uuja_ 8 DELNRAIADYLRSNGYEEAYSVFKKEAELD 37 (76)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHCCC
Confidence 799999999999999999999999998765
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.53 E-value=0.63 Score=44.68 Aligned_cols=81 Identities=10% Similarity=-0.009 Sum_probs=54.0
Q ss_pred CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCc-EEEEEEcCCCC-EEE
Q 010754 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGS-LLA 414 (502)
Q Consensus 337 ~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~-i~~l~~sp~g~-~la 414 (502)
|.|.-+|+.+++.+.++...........-..++.+++++.|+.++.+|..+++.+..+.-.... -.-+.|..+|+ |++
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~ 523 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEE
Confidence 6799999999998877654332222222235667778999999999999999999888633211 11245555775 555
Q ss_pred EEe
Q 010754 415 SCS 417 (502)
Q Consensus 415 s~s 417 (502)
+..
T Consensus 524 v~~ 526 (571)
T d2ad6a1 524 SMY 526 (571)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.64 E-value=3.1 Score=39.52 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=47.2
Q ss_pred EEEecCCCEEEEEec----------------CCeEEEEEcCCCceEEEEeeccCCe-----------EEEEecCCC--EE
Q 010754 321 LKWNKKGDYLLTGSC----------------DKTAIVWDVKTEEWKQQFEFHSGPT-----------LDVDWRNNV--SF 371 (502)
Q Consensus 321 l~~~~~~~~l~s~~~----------------d~~i~~wd~~~~~~~~~~~~~~~~v-----------~~v~~~~~~--~~ 371 (502)
..+.+....++.+.. ...+.-.|.++|+.+..++.....+ ..+...... .+
T Consensus 240 ~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v 319 (571)
T d2ad6a1 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL 319 (571)
T ss_dssp CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred cccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccce
Confidence 455666666555433 3468888999999988887533222 122222221 35
Q ss_pred EEEeCCCeEEEEEcCCCcceEE
Q 010754 372 ATSSTDNMIYVCKIGENRPIKT 393 (502)
Q Consensus 372 ~~~~~d~~i~i~d~~~~~~~~~ 393 (502)
+.++.+|.++++|..+++++..
T Consensus 320 ~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 320 SHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEE
T ss_pred eeccccceEEEEecCCCcEeee
Confidence 6778999999999999887643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.54 E-value=0.89 Score=43.58 Aligned_cols=81 Identities=10% Similarity=0.029 Sum_probs=52.1
Q ss_pred CeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCcEE-EEEEcCCCC-EEE
Q 010754 337 KTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVN-CVKWDPTGS-LLA 414 (502)
Q Consensus 337 ~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~i~-~l~~sp~g~-~la 414 (502)
|.+.-||+.+++.+.++...........-..++.+++++.|+.++.+|..+++.+..+.-..+... =+.|..+|+ ||+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~ 536 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEE
Confidence 357788888888887766543221112223466777899999999999999999988864322110 144555776 444
Q ss_pred EEe
Q 010754 415 SCS 417 (502)
Q Consensus 415 s~s 417 (502)
..+
T Consensus 537 v~~ 539 (573)
T d1kb0a2 537 VAV 539 (573)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=92.83 E-value=1.5 Score=39.14 Aligned_cols=122 Identities=13% Similarity=0.162 Sum_probs=74.5
Q ss_pred CCCceEEEEEcCCCCeEEEEeCC-CcEEEEecCCCCccCCCCCCCceeEEEeeecCccccCCCCeEEEEECCCCCEEEEE
Q 010754 214 HTSEVCACAWSPAGSLLASGSGD-STARIWTIADGTSNGGAQNGPLNVLVLKHVKGRTNEKSKDVTTLDWNGEGTLLATG 292 (502)
Q Consensus 214 H~~~V~~~~~~p~~~~l~sgs~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~~g~~l~s~ 292 (502)
|.......++.++|.+++.|+.+ ..+.+||..+...... ... .....-.+++..+||++++.|
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~-----------~~~-----~~~r~~~~~~~~~dG~v~v~G 137 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-----------PDM-----QVARGYQSSATMSDGRVFTIG 137 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-----------CCC-----SSCCSSCEEEECTTSCEEEEC
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCccccc-----------ccc-----cccccccceeeecCCceeeec
Confidence 33334567888999999988765 5899999877543110 000 011123456667899999988
Q ss_pred ECC------CeEEEEECCCceEEEecCccC---------------CeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEE
Q 010754 293 SYD------GQARIWSTNGDLKCTLSKHKG---------------PIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQ 351 (502)
Q Consensus 293 ~~d------g~i~iwd~~~~~~~~~~~~~~---------------~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 351 (502)
+.+ ..+.+||........+..... .-..+..-++|+.++.+...+.+.++|..+.....
T Consensus 138 G~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~ 217 (387)
T d1k3ia3 138 GSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS 217 (387)
T ss_dssp CCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE
T ss_pred cccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEee
Confidence 753 368999987665544321100 00112223567777777777788888877766543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=92.83 E-value=0.56 Score=45.08 Aligned_cols=72 Identities=6% Similarity=0.015 Sum_probs=48.2
Q ss_pred CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc----CCCcEEEEEEccCCC
Q 010754 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGS 453 (502)
Q Consensus 378 ~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~----h~~~i~~v~~sp~g~ 453 (502)
|.+.-||+.+++.+.++.... +...=..+-.|.+|++|+.||.++.+|.++|+.+.++.. +..+ +.|..+|.
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk 532 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR 532 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence 356777888887776665332 111111223577888999999999999999999988763 2233 45556775
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=92.57 E-value=0.48 Score=45.41 Aligned_cols=75 Identities=7% Similarity=0.055 Sum_probs=48.9
Q ss_pred CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC-cEEEEEEccCCC
Q 010754 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EIYTIRWSPTGS 453 (502)
Q Consensus 378 ~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~v~~sp~g~ 453 (502)
|.|.-+|+.+++.+..+... ....+-.+.-.|.+++.|+.||.++.+|..+|+.+.++..... .-.-+.+..+|.
T Consensus 438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cceEEEeCCCCeEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 46777888888877666522 2222212233467888999999999999999999988873221 111245566775
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=92.26 E-value=3.4 Score=36.31 Aligned_cols=195 Identities=9% Similarity=0.074 Sum_probs=109.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCceEEEecCccCCeEEEEEec------CCCEEEEEe-cC---CeEEEEEcCC-CceEEE
Q 010754 284 GEGTLLATGSYDGQARIWSTNGDLKCTLSKHKGPIFSLKWNK------KGDYLLTGS-CD---KTAIVWDVKT-EEWKQQ 352 (502)
Q Consensus 284 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~l~~~~------~~~~l~s~~-~d---~~i~~wd~~~-~~~~~~ 352 (502)
|+..+++.....+-|.+||++++.+..+. .+.+..+..-. ...-+++++ .+ .+|.+|.+.. ...+..
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred cCccEEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 34567777777777999999998887764 34555555432 222344444 22 3688887742 333333
Q ss_pred Eeec-------cCCeEEEEe--cCC-C--EEEEEeCCCeEEEEEcC---CC----cceEEEecCCCcEEEEEEcCCCCEE
Q 010754 353 FEFH-------SGPTLDVDW--RNN-V--SFATSSTDNMIYVCKIG---EN----RPIKTFAGHQGEVNCVKWDPTGSLL 413 (502)
Q Consensus 353 ~~~~-------~~~v~~v~~--~~~-~--~~~~~~~d~~i~i~d~~---~~----~~~~~~~~h~~~i~~l~~sp~g~~l 413 (502)
+... ...+..+|. .+. + .+++...+|.+..|.+. .+ +.+++|. -...+-+|.+++....|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 3221 123556665 332 2 35566778899888763 22 2345554 34678899999999999
Q ss_pred EEEeCCCcEEEEECC-----CCeeEEEecc--CCCcEEEEEEccCCCCCCCCCccEEEEeec--CceEEEEeeeEEEeee
Q 010754 414 ASCSDDVTAKIWNMK-----QDKYVHDLRE--HSKEIYTIRWSPTGSGTNNPNQQLILARLI--PYFLYWICSIYFKYFG 484 (502)
Q Consensus 414 as~s~dg~i~iwd~~-----~~~~~~~~~~--h~~~i~~v~~sp~g~~~~~~~~~l~las~~--~~~~iw~~~~~~~~~g 484 (502)
..+-++.-|..++.. ....+....+ ....+-.|+.-..+. .. -.+++|+- ....++.-.-.+.+.|
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~----~~-GylivSsQG~n~f~vydr~~~~~~~g 269 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAAD----GK-GYLLASSQGNSSYAIYERQGQNKYVA 269 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGG----GC-EEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCC----CC-eEEEEEcCCCCeEEEEecCCCccccc
Confidence 999887655555543 2233333322 345677777543321 11 24555544 4455554322234444
Q ss_pred cc
Q 010754 485 TT 486 (502)
Q Consensus 485 ~~ 486 (502)
..
T Consensus 270 ~F 271 (353)
T d1h6la_ 270 DF 271 (353)
T ss_dssp EE
T ss_pred eE
Confidence 43
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.28 E-value=0.96 Score=43.44 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=50.6
Q ss_pred CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeccCCC-cEEEEEEccCCC
Q 010754 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSK-EIYTIRWSPTGS 453 (502)
Q Consensus 378 ~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~h~~-~i~~v~~sp~g~ 453 (502)
|.|.-+|+.+++.+..+..+. ++.+-.++..|.++++|+.||.++.+|..+|+.+.+++.... .-.-+.|..+|.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~ 541 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 567778888887777665332 222212234577888899999999999999999988873221 112256677875
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=91.11 E-value=1.8 Score=41.26 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=39.2
Q ss_pred CeEEEEECCCceEEEecCccCCeEEEEEecCCCEEEEEecCCeEEEEEcCCCceEEEEeec
Q 010754 296 GQARIWSTNGDLKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFH 356 (502)
Q Consensus 296 g~i~iwd~~~~~~~~~~~~~~~v~~l~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 356 (502)
|.|.-||+.+..+.-......+..+-.+.-.+.++++|+.||.++.+|..+|+.+.++...
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~ 498 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence 4566677654333222222223222223334678888999999999999999999988764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.00 E-value=5.6 Score=36.30 Aligned_cols=60 Identities=8% Similarity=0.165 Sum_probs=39.1
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEecCCCCccCCCCCCCceeEEEeeecCc--cccCCCCeEEEEECCC
Q 010754 215 TSEVCACAWSPAGSLLASGSGDSTARIWTIADGTSNGGAQNGPLNVLVLKHVKGR--TNEKSKDVTTLDWNGE 285 (502)
Q Consensus 215 ~~~V~~~~~~p~~~~l~sgs~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~s~~ 285 (502)
-..-++|+|.|+|++|++--..|.|++++..++... .+..+... ..........|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~-----------~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK-----------TVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-----------EEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEe-----------ecccCCccccccCCCCceeeEEeCCC
Confidence 356679999999998888755799999987665421 11111111 1122356889999985
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.38 E-value=0.91 Score=43.62 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=55.0
Q ss_pred CCeEEEEEcCCCceEEEEeeccCCeEEEEecCCCEEEEEeCCCeEEEEEcCCCcceEEEecCCCc-EEEEEEcCCCC-EE
Q 010754 336 DKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGE-VNCVKWDPTGS-LL 413 (502)
Q Consensus 336 d~~i~~wd~~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~-i~~l~~sp~g~-~l 413 (502)
.|.|.-+|+.+++.+.++...........-..++.+++++.||.++.+|..+++.+..+.-.... -.-+.|..+|+ |+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv 544 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEE
Confidence 36788899999998887765433222222244567778999999999999999999888743221 11156667885 55
Q ss_pred EEE
Q 010754 414 ASC 416 (502)
Q Consensus 414 as~ 416 (502)
+..
T Consensus 545 ~i~ 547 (582)
T d1flga_ 545 GVT 547 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.64 E-value=7.3 Score=35.48 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=37.2
Q ss_pred CCeEEEEECCCCCEEEEEECCCeEEEEECCCceEEEec---------CccCCeEEEEEecC
Q 010754 275 KDVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKCTLS---------KHKGPIFSLKWNKK 326 (502)
Q Consensus 275 ~~v~~l~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~---------~~~~~v~~l~~~~~ 326 (502)
...++|+|.|+|+++++--..|.|++++..+.....+. .-......|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 35789999999998887655799999986654333221 12356789999984
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=88.82 E-value=6.6 Score=37.32 Aligned_cols=110 Identities=10% Similarity=0.040 Sum_probs=71.8
Q ss_pred CEEEEEecCCeEEEEEcCCCceEEEEeeccCCe-EEEEe---cCCCEEEEEeC------CCeEEEEEcCCCcceEEEecC
Q 010754 328 DYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPT-LDVDW---RNNVSFATSST------DNMIYVCKIGENRPIKTFAGH 397 (502)
Q Consensus 328 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v-~~v~~---~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~h 397 (502)
..++.++.|+.|.-.|..+|+.+..+....... ..+.- .-++.++++.. .|.|+-+|..+++.+.++...
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~ 201 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence 478889999999999999999988875321100 01111 11445555543 589999999999998876521
Q ss_pred C-------------------------------------Cc-EEEEEEcCCCCEEEEEeCC----------------CcEE
Q 010754 398 Q-------------------------------------GE-VNCVKWDPTGSLLASCSDD----------------VTAK 423 (502)
Q Consensus 398 ~-------------------------------------~~-i~~l~~sp~g~~las~s~d----------------g~i~ 423 (502)
. .. -..+++++...++..+..+ ..|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv 281 (596)
T d1w6sa_ 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (596)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence 1 01 1234666776666665433 3477
Q ss_pred EEECCCCeeEEEec
Q 010754 424 IWNMKQDKYVHDLR 437 (502)
Q Consensus 424 iwd~~~~~~~~~~~ 437 (502)
--|+++++.+..++
T Consensus 282 AlD~~TG~~~W~~Q 295 (596)
T d1w6sa_ 282 GRDADTGEAKFGYQ 295 (596)
T ss_dssp EEETTTCCEEEEEE
T ss_pred cccccccccccccc
Confidence 78899999887665
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=84.26 E-value=0.67 Score=44.69 Aligned_cols=72 Identities=10% Similarity=-0.027 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCcceEEEecCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEecc----CCCcEEEEEEccCCC
Q 010754 378 NMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLRE----HSKEIYTIRWSPTGS 453 (502)
Q Consensus 378 ~~i~i~d~~~~~~~~~~~~h~~~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~~~~----h~~~i~~v~~sp~g~ 453 (502)
|.|.-||+.+++.+.... +...+.+-.++-.|.+++.|+.||.++.+|.++|+.+.++.. +..| +.|..+|.
T Consensus 453 G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P---~tY~~dGk 528 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKGT 528 (596)
T ss_dssp EEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred ceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC---eEEEECCE
Confidence 567888888888766554 222222212233577888899999999999999999988862 2334 44556775
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.61 E-value=9.3 Score=30.55 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=25.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 010754 400 EVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHD 435 (502)
Q Consensus 400 ~i~~l~~sp~g~~las~s~dg~i~iwd~~~~~~~~~ 435 (502)
.|+-+-+.|++++++.+-.||.-+++. +|+.+..
T Consensus 239 ~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~ 272 (313)
T d2hu7a1 239 AITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA 272 (313)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred EEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence 355567899999988899999988886 3555443
|