Citrus Sinensis ID: 010807
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 500 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SV96 | 563 | Pentatricopeptide repeat- | yes | no | 0.866 | 0.769 | 0.735 | 0.0 | |
| Q9SQU6 | 486 | Pentatricopeptide repeat- | no | no | 0.696 | 0.716 | 0.294 | 1e-43 | |
| Q9SCP4 | 447 | Pentatricopeptide repeat- | no | no | 0.716 | 0.800 | 0.283 | 2e-42 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.804 | 0.466 | 0.262 | 1e-41 | |
| Q9FKC3 | 508 | Pentatricopeptide repeat- | no | no | 0.666 | 0.655 | 0.286 | 2e-40 | |
| Q8RWS8 | 822 | Pentatricopeptide repeat- | no | no | 0.942 | 0.572 | 0.234 | 1e-34 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.722 | 0.440 | 0.252 | 4e-34 | |
| Q5G1S8 | 1440 | Pentatricopeptide repeat- | no | no | 0.718 | 0.249 | 0.237 | 2e-33 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.65 | 0.539 | 0.293 | 5e-33 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.678 | 0.547 | 0.267 | 1e-32 |
| >sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/434 (73%), Positives = 363/434 (83%), Gaps = 1/434 (0%)
Query: 52 RTRPRTGICCVWTRPRSKRG-RKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSE 110
R RT I C R K R+S E E++ LVR LM SD+EPLV+TL+KYVKVVR +
Sbjct: 39 RRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCD 98
Query: 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170
HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSE
Sbjct: 99 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSE 158
Query: 171 MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230
M+NSGCRPD SVYNALITAHLHTRDKAKAL K GY KMKG+ERC+PN+VTYNILLRA
Sbjct: 159 MKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAF 218
Query: 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 290
AQ+ VDQVNALFK+L S ++PD+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDI
Sbjct: 219 AQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDI 278
Query: 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350
ITFN+LIDSYGK+Q F+KMEQ FKSLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+K
Sbjct: 279 ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKK 338
Query: 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
M M Y PSFITYEC+I MYGYC +VSRAREIF+E+ + + +K STLNAMLE YC NGL
Sbjct: 339 MNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGL 398
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 470
EAD LF N+ V PD+STYK LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLE
Sbjct: 399 YIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLE 458
Query: 471 ALETFSSSLAGSQS 484
ALE F S L GS S
Sbjct: 459 ALEVFGSRLPGSGS 472
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May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 5/353 (1%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
+WLQ LEVF +++Q +Y G Y KL+ ++GK GQ A LF EM G P +Y
Sbjct: 103 QWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELY 162
Query: 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 243
AL+ A+ ++ + A KMK +C+P++ TY+ LL+AC A D V++L+
Sbjct: 163 TALLAAYT----RSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLY 218
Query: 244 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFNLLIDSYGK 302
KE+ E ++ P+ T N V+ YG+ G +ME VLS M S CKPD+ T N+++ +G
Sbjct: 219 KEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGN 278
Query: 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 362
D ME ++ + +P TFN +I +YGK R+ K V + M +++ + T
Sbjct: 279 MGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTST 338
Query: 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422
Y II + + FD++ G T ++ Y GL + + +
Sbjct: 339 YNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAA 398
Query: 423 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+ +++ Y + A KA+ ++++ RM++ V + R F +E +
Sbjct: 399 KFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 179/363 (49%), Gaps = 5/363 (1%)
Query: 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG 175
+E K ++W L++F ++KQ WY Y+KL V+G Q A LF M + G
Sbjct: 65 LDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEG 124
Query: 176 CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 235
+P VY +LI+ + K++ L KA + MK + CKP++ T+ +L+ C +
Sbjct: 125 LKPTIDVYTSLISVY----GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGR 180
Query: 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPDIITFN 294
D V ++ E+ + TYN ++D YGK GM +EMESVL+ M + PD+ T N
Sbjct: 181 FDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLN 240
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
+I SYG + KME + +P + TFN +I+++GKA + K V M
Sbjct: 241 SIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKR 300
Query: 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414
++ + +TY +I +G + + ++F ++ G T +++ AY GL +
Sbjct: 301 FFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKI 360
Query: 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALET 474
D + N V D+ + + AY +A +++L +ME+ P+K F ++T
Sbjct: 361 DSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKT 420
Query: 475 FSS 477
+++
Sbjct: 421 YTA 423
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/411 (26%), Positives = 200/411 (48%), Gaps = 9/411 (2%)
Query: 69 KRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQC 128
++G+ S ++ES L+ L S + + R L+ + + L+F+E W +
Sbjct: 68 EKGKYSYDVES--LINKL-SSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRS 124
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L +F++MQ+Q W + IY+ +I+++G++G + +F EM + G Y ALI
Sbjct: 125 LRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALIN 184
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKELH 247
A+ + +L +MK E+ P+I+TYN ++ ACA+ + + + LF E+
Sbjct: 185 AY----GRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEMR 239
Query: 248 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 307
+ PDI TYN ++ A G+ E E V M PD+ T++ L++++GK + +
Sbjct: 240 HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLE 299
Query: 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367
K+ + + P + ++N ++ Y K+ +A VF +M A TP+ TY ++
Sbjct: 300 KVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLL 359
Query: 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 427
++G R++F E+ D +T N ++E + G E LF + +
Sbjct: 360 NLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIE 419
Query: 428 PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478
PD TY+ + A K + E +K+L+ M N IVP+ + + +E F +
Sbjct: 420 PDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 173/373 (46%), Gaps = 40/373 (10%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
+W ++VF +++Q WY + GIY KLI ++GK Q A LF EM N GC + VY
Sbjct: 129 RWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVY 188
Query: 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 243
AL++A+ ++ A ++MK C+P++ TY+IL+++ Q D+V L
Sbjct: 189 TALVSAY----SRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLL 244
Query: 244 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM-KSNQCKPD------------- 289
++ + P+ TYN ++DAYGK M EMES L +M + CKPD
Sbjct: 245 SDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGG 304
Query: 290 ----------------------IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327
I TFN+L+DSYGK + KM V + + T+ T
Sbjct: 305 NGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVT 364
Query: 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387
+N +I +G+A + EY+F+ M + + PS +T ++ YG + + +
Sbjct: 365 YNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIE 424
Query: 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKE 447
+ + N +++AY E + E G PD TY+ + KAY + M
Sbjct: 425 NSDIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTT 484
Query: 448 LVQKLLKRMEQNG 460
V++L +E G
Sbjct: 485 HVKELHGVVESVG 497
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 223/507 (43%), Gaps = 36/507 (7%)
Query: 3 LTNLSPYSLRLSTLSSSSASSSSSSSSSSFNQ--SSSQNYNFTHRHIPLSLRTRPRTGIC 60
+ ++ + L SS + ++ +S +F + S S NY+ + +++ + I
Sbjct: 1 MATVTNFKLVTPPESSRADKPGATKASDAFQEKKSVSVNYDRGEHEVSVNIGGLRKADIP 60
Query: 61 CVWTRPRSKRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELG 120
+ R R + R ++ E+V LM + + E + LN +V ++ +L EL
Sbjct: 61 RRY-RIRVENDRFQKDWSVSEVVDRLM-ALNRWEEVDGVLNSWVGRFARKNFPVLIRELS 118
Query: 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDP 180
+ C+ VF+WM+ Q+ Y A IY+ +I + + A LF EM+ C+PD
Sbjct: 119 RRGCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDA 178
Query: 181 SVYNALITAH---------------------LHTRDKAKALAKALGYFQKMK-GMERCK- 217
Y+ALI AH +R L A G + +E CK
Sbjct: 179 ETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKK 238
Query: 218 -------PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270
P++VT+NI+L A R + + F+ + + + PD T+N ++ K G
Sbjct: 239 MTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQ 298
Query: 271 IKEMESVLSRM--KSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328
+ + + M K +C+PD++TF ++ Y + + VF++++ KP + ++
Sbjct: 299 SSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSY 358
Query: 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388
N+++ Y + G A V + P ++Y C++ YG +A+E+F + K
Sbjct: 359 NALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRK 418
Query: 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448
+ V T NA+++AY NG EA +F G+ P+ + L A +++ K
Sbjct: 419 ERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVN 478
Query: 449 VQKLLKRMEQNGIVPNKRFFLEALETF 475
V +L + GI N + A+ ++
Sbjct: 479 VDTVLSAAQSRGINLNTAAYNSAIGSY 505
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 168/373 (45%), Gaps = 12/373 (3%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
++ LGK + +F +Q+ + + D Y+ LI+ G+ R A+ +F +M
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSL-DVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
GC+P YN ++ K +KMK + P+ TYN L+ C +
Sbjct: 237 DGCKPTLITYNVILNVF---GKMGTPWNKITSLVEKMKS-DGIAPDAYTYNTLITCCKRG 292
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
+ +F+E+ + + D TYN ++D YGK+ KE VL+ M N P I+T+
Sbjct: 293 SLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N LI +Y + D+ ++ + KP + T+ +++ + +A A +F++M
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
P+ T+ I MYG + +IFDE++ G + T N +L + NG+ +E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473
+F+ G P+ T+ L AY++ E + +RM G+ P+ L
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPD-------LS 525
Query: 474 TFSSSLAGSQSGS 486
T+++ LA G
Sbjct: 526 TYNTVLAALARGG 538
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/405 (23%), Positives = 182/405 (44%), Gaps = 46/405 (11%)
Query: 102 KYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQT 161
+ V++ +++CF++ + +G+ + W + LEVF W+ + W+ + + + ++ V+G+ Q
Sbjct: 150 RLVQMTPTDYCFVV-KSVGQ-ESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQE 207
Query: 162 RLAMWLFSE----------------------------------MRNSGCRPDPSVYNALI 187
LA+ +F+ MR GC PD +N LI
Sbjct: 208 SLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLI 267
Query: 188 TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 247
A L + LA L + G+ +P+ +TYN LL AC++ N+D +F+++
Sbjct: 268 NARLKSGGLTPNLAVELLDMVRNSGL---RPDAITYNTLLSACSRDSNLDGAVKVFEDME 324
Query: 248 ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFD 307
PD++TYN ++ YG+ G+ E E + ++ PD +T+N L+ ++ + + +
Sbjct: 325 AHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTE 384
Query: 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITY 363
K+++V++ + T+N++I YGK QG+ + Q MK P ITY
Sbjct: 385 KVKEVYQQMQKMGFGKDEMTYNTIIHMYGK---QGQLDLALQLYKDMKGLSGRNPDAITY 441
Query: 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423
+I G + A + E+ +G + T +A++ Y G EA+ F
Sbjct: 442 TVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLR 501
Query: 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 468
G PD+ Y ++ + N L + M +G P+ +
Sbjct: 502 SGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLY 546
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 100/341 (29%), Positives = 163/341 (47%), Gaps = 16/341 (4%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L++ R M+ +R AD YS +I + + G A+ LF EM G + YN+L+
Sbjct: 213 LDLLRKME-ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVR 271
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248
KA + M E PN++T+N+LL + + + N L+KE+
Sbjct: 272 GLC----KAGKWNDGALLLKDMVSRE-IVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 326
Query: 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308
++P+I TYN +MD Y + E ++L M N+C PDI+TF LI Y + D
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386
Query: 309 MEQVFKSLMHSKEKPTLPTFNSMIINY---GKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
+VF+++ T++ ++ + GK +L AE +FQ+M + P +TY
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL---AEELFQEMVSHGVLPDVMTYG- 442
Query: 366 IITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423
I + G CDN + +A EIF++L K D+ + ++E C G +A LF +
Sbjct: 443 -ILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPC 501
Query: 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
GV P+ TY ++ K LL++ME++G PN
Sbjct: 502 KGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 542
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 172/355 (48%), Gaps = 16/355 (4%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
+ L KS L++FR M+ +R A YS +I + K G A+ LF+EM
Sbjct: 216 VLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 175 GCRPDPSVYNALITAHLHT---RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231
G + D Y++LI + D AK L + +G P++VT++ L+
Sbjct: 275 GIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG--------RNIIPDVVTFSALIDVFV 326
Query: 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291
+ + + L+ E+ +APD TYN ++D + K + E + M S C+PDI+
Sbjct: 327 KEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIV 386
Query: 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351
T+++LI+SY K + D ++F+ + P T+N++++ + ++ A+ +FQ+M
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEM 446
Query: 352 TAMKYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409
+ PS +TY I + G CDN +++A EIF+++ K + + N ++ C
Sbjct: 447 VSRGVPPSVVTYG--ILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504
Query: 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+A LF + + GV PD TY ++ K L ++M+++G P+
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 500 | ||||||
| 255582522 | 478 | pentatricopeptide repeat-containing prot | 0.934 | 0.976 | 0.722 | 0.0 | |
| 225438599 | 489 | PREDICTED: pentatricopeptide repeat-cont | 0.946 | 0.967 | 0.732 | 0.0 | |
| 224081220 | 416 | predicted protein [Populus trichocarpa] | 0.832 | 1.0 | 0.757 | 0.0 | |
| 356511125 | 503 | PREDICTED: pentatricopeptide repeat-cont | 0.866 | 0.860 | 0.727 | 0.0 | |
| 356528509 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.874 | 0.753 | 0.726 | 0.0 | |
| 15235161 | 563 | pentatricopeptide repeat-containing prot | 0.866 | 0.769 | 0.735 | 0.0 | |
| 334187332 | 510 | pentatricopeptide repeat-containing prot | 0.866 | 0.849 | 0.735 | 0.0 | |
| 449451631 | 528 | PREDICTED: pentatricopeptide repeat-cont | 0.888 | 0.840 | 0.706 | 0.0 | |
| 449525698 | 494 | PREDICTED: pentatricopeptide repeat-cont | 0.864 | 0.874 | 0.724 | 0.0 | |
| 357519615 | 635 | Pentatricopeptide repeat-containing prot | 0.9 | 0.708 | 0.684 | 0.0 |
| >gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/493 (72%), Positives = 419/493 (84%), Gaps = 26/493 (5%)
Query: 5 NLSPYSLRLSTLSSSSASSSSSSSSSSFNQSSSQNYNFTHRHIPLSLRTRP-----RTGI 59
NLSP+SL+LS L SS+ ++ NF H P +L P +T I
Sbjct: 4 NLSPHSLQLSPLGSSNFTN-----------------NFPQIHNP-TLSWHPCKNLRQTHI 45
Query: 60 CCVWTRPRSKRGRKSEELESKELVRVLMRSFS-DKEPLVRTLNKYVKVVRSEHCFLLFEE 118
CV TRPR KR SEE E+++LVR ++RSFS DK PLVRTL+KYV+VVR+EHCFLLFEE
Sbjct: 46 TCVSTRPRKKRFPISEESETEDLVRYVLRSFSSDKVPLVRTLDKYVRVVRTEHCFLLFEE 105
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
LG+ DKWLQCLEVFRWMQKQRWYIAD+G+YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRP
Sbjct: 106 LGRRDKWLQCLEVFRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRP 165
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 238
D SVYNALITAHLH++DKAKAL KALGYF+KMKGM+RC+PN+VTYNILLRA AQARNV+Q
Sbjct: 166 DSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQ 225
Query: 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298
VNALFK+L +SI++PDIYTYNGVMDAYGKNGMI+EMESVLSRMKSNQCKPDIITFNLLID
Sbjct: 226 VNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLID 285
Query: 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358
SYGK+Q FDKMEQVFKSL+HSKE+PTLPTFNSMI NYGKAR + AE V QKMT MKYTP
Sbjct: 286 SYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQKENAESVLQKMTKMKYTP 345
Query: 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418
+FITYE +I MYG+CD+VS+AREIFD++ + GK++KVSTLNAML+ YC+NGLP EADLLF
Sbjct: 346 NFITYESLIMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAMLDVYCLNGLPMEADLLF 405
Query: 419 ENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS- 477
+N+ N+G+ PDS+TYKLLYKAYTKANMK+LVQKLLK M+++GI+PNKRFFL+AL F S
Sbjct: 406 DNARNVGLLPDSTTYKLLYKAYTKANMKKLVQKLLKHMDRDGIIPNKRFFLDALGAFKSL 465
Query: 478 -SLAGSQSGSAKT 489
+ +G+Q +AKT
Sbjct: 466 PASSGNQQNNAKT 478
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Vitis vinifera] gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/478 (73%), Positives = 400/478 (83%), Gaps = 5/478 (1%)
Query: 24 SSSSSSSSFNQSSSQNYNFTHRHIPLSLRTRPRTGIC-CVWTRPRSKRGRKSEELESKEL 82
SSS+ S +F SS+ Y T H+P RP T + CV TRPR K G K ++ E +EL
Sbjct: 16 SSSTLSPTFTLPSSRFYKPTRLHLP----PRPSTTVVSCVSTRPRRKPGPKPDKSEVEEL 71
Query: 83 VRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYI 142
VRVLM++F + PL+ TLNKYVKV+R+EHCF LFEELGK+DKWLQCLEVFRWMQKQRWYI
Sbjct: 72 VRVLMKNFGGERPLISTLNKYVKVIRTEHCFRLFEELGKTDKWLQCLEVFRWMQKQRWYI 131
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202
AD G+YSKLI+VMGKKGQTR+AMWLFSEMRNSGCRPD SVYNALITAHLH+RDK+KAL K
Sbjct: 132 ADNGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIK 191
Query: 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262
ALGYF KMKGMERCKPNIVTYNILLRA AQA+NV+Q NALFKEL+ESI++PDI+T+NGVM
Sbjct: 192 ALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVM 251
Query: 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322
DAYGKNGMIKEMESVLSRMKSNQCKPDIITFN+LIDSYG+RQ FDKMEQVFKSL+ SKEK
Sbjct: 252 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQEFDKMEQVFKSLLRSKEK 311
Query: 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382
PTLPTFNSMI NYGKARL+ KAE VF+KMT M Y P+FITYE +I MYG+CD +SRAREI
Sbjct: 312 PTLPTFNSMITNYGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREI 371
Query: 383 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442
FDE+ K+MKVSTLNAMLE YCMNGLP EADLL E + P SSTYKLLYKAYTK
Sbjct: 372 FDEMMASKKEMKVSTLNAMLEVYCMNGLPMEADLLLERARKNRPFPGSSTYKLLYKAYTK 431
Query: 443 ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTRSLSTAKS 500
A+ KEL++KLLK M+ +GI+PNKRFFLEAL F SS A +S + T LTR ++AK+
Sbjct: 432 ADQKELLEKLLKLMDSDGILPNKRFFLEALGAFGSSPASQESAGSTTGLTRPRNSAKT 489
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa] gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/416 (75%), Positives = 375/416 (90%)
Query: 57 TGICCVWTRPRSKRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLF 116
T + CV TRP+ + E+ E++ELVRVL+RSFSDK+PLV+TLNKYVKV+R+EHCF+LF
Sbjct: 1 TQVSCVSTRPKKRPVPTDEKSEAQELVRVLVRSFSDKQPLVKTLNKYVKVMRTEHCFMLF 60
Query: 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC 176
EELGK+DKWLQCLEVFRWMQKQRWY+AD G YSKLI+VMGKKGQTR+AMWLFSEMRNSGC
Sbjct: 61 EELGKTDKWLQCLEVFRWMQKQRWYVADNGCYSKLISVMGKKGQTRMAMWLFSEMRNSGC 120
Query: 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 236
RPD SVYNALITAHLH++DKAK+L KAL YF+KMK +ERC+PN+VTYNI+LRA AQARNV
Sbjct: 121 RPDTSVYNALITAHLHSKDKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAFAQARNV 180
Query: 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296
+QVNALFK+L ESI++PDIYTYNGV+DAYGKNGMI+EMESVLSRMK +QCKPDIITFNLL
Sbjct: 181 NQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDIITFNLL 240
Query: 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356
IDSYGK+Q F+KMEQVFKSL+ SKEKPTLPTFNSMI+NYGKARL+ KAE VF+KM M+Y
Sbjct: 241 IDSYGKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKDKAESVFKKMADMRY 300
Query: 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416
TPSFIT+E +I MYG CD VS+AR+IFD++ + GK++KVSTLNA+L YCMNGL EA +
Sbjct: 301 TPSFITFESLIMMYGICDCVSKARDIFDDMVESGKEVKVSTLNAVLNVYCMNGLHMEAHI 360
Query: 417 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472
L EN+ ++GV P+SSTYKLLY+AYTKA MKELVQKLLK M+++GI+PNKRFF++AL
Sbjct: 361 LLENARSIGVPPNSSTYKLLYRAYTKAKMKELVQKLLKHMDKDGIIPNKRFFVDAL 416
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/437 (72%), Positives = 375/437 (85%), Gaps = 4/437 (0%)
Query: 55 PRTGICCVWTRPRSKRGRKSEELESKELVRVLMRSFS-DKEPLVRTLNKYVKVVRSEHCF 113
P + I C R KR + + E++ELVR+L S DKEPL++TLNKYVK VR++HCF
Sbjct: 21 PLSRISC---GARPKRKKSNHNSEAQELVRLLTSKISNDKEPLLKTLNKYVKQVRTQHCF 77
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
LLFEEL K D WLQCLEVFRWMQKQRWYIAD GIYSKLI+VMGKKGQTR+AMWLFSEMRN
Sbjct: 78 LLFEELAKHDNWLQCLEVFRWMQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLFSEMRN 137
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
+GCRPD SVYNALITAHLH+RDK KALAKA+GYFQKMKGMERCKPNIVTYNILLRA AQA
Sbjct: 138 TGCRPDTSVYNALITAHLHSRDKTKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQA 197
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
RNV+QVN+LFK+L ESI++PDIYT+NGVMDAYGKNGMI+EME+VL+RMKSNQCKPD+ITF
Sbjct: 198 RNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITF 257
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
NLLIDSYGK+Q F KMEQVFKSL+ SKE+ +LPTFNSMI+NYGKARL+ KAE VF++MT
Sbjct: 258 NLLIDSYGKKQEFGKMEQVFKSLLRSKERASLPTFNSMILNYGKARLKDKAEDVFKRMTD 317
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
M YTPSF+T+E +I MYG+CD VSRA ++FDEL + +KVSTLNAML+ YC+NGLP E
Sbjct: 318 MGYTPSFVTHESLIYMYGFCDCVSRAAQLFDELVESKAHIKVSTLNAMLDVYCINGLPQE 377
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473
AD LFE ++++ + PDSST+KLLYKAYTKAN KEL+ KLLK M+++GIVPNKRFFL+AL
Sbjct: 378 ADSLFERANSIKIYPDSSTFKLLYKAYTKANQKELLDKLLKHMDKDGIVPNKRFFLDALG 437
Query: 474 TFSSSLAGSQSGSAKTD 490
+S A S+S +A TD
Sbjct: 438 AVASLPANSESANAATD 454
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/442 (72%), Positives = 379/442 (85%), Gaps = 5/442 (1%)
Query: 52 RTRPRTGICCVWTRPRSKRGRKSEELESKELVRVL---MRSFSDKEPLVRTLNKYVKVVR 108
R P + I C RP K + + E++ELVR+L +RS +DKE L++TLNKYVK VR
Sbjct: 78 RAAPLSRISCGGPRP-PKSKKSNLNSEAQELVRLLTSKIRS-NDKEVLLKTLNKYVKQVR 135
Query: 109 SEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLF 168
++HCFLLFEELGK D WLQCLEVFRWMQKQRWYIAD GIYSKLI+VMGKKGQTR+AMWLF
Sbjct: 136 TQHCFLLFEELGKHDNWLQCLEVFRWMQKQRWYIADNGIYSKLISVMGKKGQTRMAMWLF 195
Query: 169 SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR 228
SEMRN+GCRPD SVYNALITAHL +RDK KALAKA+GYFQKMKGMERCKPNIVTYNILLR
Sbjct: 196 SEMRNTGCRPDTSVYNALITAHLRSRDKIKALAKAIGYFQKMKGMERCKPNIVTYNILLR 255
Query: 229 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 288
A AQARNV+QVN+LFK+L ESI++PDIYT+NGVMDAYGKNGMI+EME+VL+RMKSNQCKP
Sbjct: 256 AFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKP 315
Query: 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 348
D+ITFNLLIDSYGK+QAF KMEQVFKSL+HSKE+P+LPTFNSMI+NYGKARL+ KAE VF
Sbjct: 316 DLITFNLLIDSYGKKQAFGKMEQVFKSLLHSKERPSLPTFNSMILNYGKARLKDKAEDVF 375
Query: 349 QKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 408
+KMT M YT SF+T+E +I MYG+CD VSRA ++FDEL + +KVSTLNAML+ YC+N
Sbjct: 376 KKMTDMGYTLSFVTHESMIYMYGFCDCVSRAAQLFDELVESKVHIKVSTLNAMLDVYCLN 435
Query: 409 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF 468
GLP EAD LFE + ++ + PDSST+KLLYKAYTKAN KEL+ KLLK M+++GI+PNKRFF
Sbjct: 436 GLPQEADSLFERAISIKIHPDSSTFKLLYKAYTKANQKELLDKLLKHMDKDGIIPNKRFF 495
Query: 469 LEALETFSSSLAGSQSGSAKTD 490
L+AL +S A S+S +A TD
Sbjct: 496 LDALGAVASLPANSESANAATD 517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39620, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2453; Flags: Precursor gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana] gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana] gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana] gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/434 (73%), Positives = 363/434 (83%), Gaps = 1/434 (0%)
Query: 52 RTRPRTGICCVWTRPRSKRG-RKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSE 110
R RT I C R K R+S E E++ LVR LM SD+EPLV+TL+KYVKVVR +
Sbjct: 39 RRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCD 98
Query: 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170
HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSE
Sbjct: 99 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSE 158
Query: 171 MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230
M+NSGCRPD SVYNALITAHLHTRDKAKAL K GY KMKG+ERC+PN+VTYNILLRA
Sbjct: 159 MKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAF 218
Query: 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 290
AQ+ VDQVNALFK+L S ++PD+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDI
Sbjct: 219 AQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDI 278
Query: 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350
ITFN+LIDSYGK+Q F+KMEQ FKSLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+K
Sbjct: 279 ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKK 338
Query: 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
M M Y PSFITYEC+I MYGYC +VSRAREIF+E+ + + +K STLNAMLE YC NGL
Sbjct: 339 MNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGL 398
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 470
EAD LF N+ V PD+STYK LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLE
Sbjct: 399 YIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLE 458
Query: 471 ALETFSSSLAGSQS 484
ALE F S L GS S
Sbjct: 459 ALEVFGSRLPGSGS 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/434 (73%), Positives = 363/434 (83%), Gaps = 1/434 (0%)
Query: 52 RTRPRTGICCVWTRPRSKRG-RKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSE 110
R RT I C R K R+S E E++ LVR LM SD+EPLV+TL+KYVKVVR +
Sbjct: 39 RRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCD 98
Query: 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170
HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSE
Sbjct: 99 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSE 158
Query: 171 MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230
M+NSGCRPD SVYNALITAHLHTRDKAKAL K GY KMKG+ERC+PN+VTYNILLRA
Sbjct: 159 MKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAF 218
Query: 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 290
AQ+ VDQVNALFK+L S ++PD+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDI
Sbjct: 219 AQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDI 278
Query: 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350
ITFN+LIDSYGK+Q F+KMEQ FKSLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+K
Sbjct: 279 ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKK 338
Query: 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
M M Y PSFITYEC+I MYGYC +VSRAREIF+E+ + + +K STLNAMLE YC NGL
Sbjct: 339 MNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGL 398
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 470
EAD LF N+ V PD+STYK LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLE
Sbjct: 399 YIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLE 458
Query: 471 ALETFSSSLAGSQS 484
ALE F S L GS S
Sbjct: 459 ALEVFGSRLPGSGS 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/449 (70%), Positives = 380/449 (84%), Gaps = 5/449 (1%)
Query: 47 IPLSLRTRPRTGICCVWTRPRSKRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKV 106
+P S++ T + C+ TRP K G K++ E++ELVR ++R+FSDKEPL++TL+KYV+V
Sbjct: 29 LPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYVRV 88
Query: 107 VRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMW 166
+R+EHCFLLFEELGK DKWL+CLEVFRWMQKQRWYIAD G+YSKLI++MGKKGQ R+AMW
Sbjct: 89 MRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMW 148
Query: 167 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226
LFSEMRNSGCRPD SVYNALITAHLH++DKAKAL K L YF+KMKGMERCKPNIVTYNIL
Sbjct: 149 LFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNIL 208
Query: 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 286
RA AQA VDQVN LFK+L ES+++ DIYTYNGVMDAYGKNG IKEME +L+RMKSNQ
Sbjct: 209 TRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQI 268
Query: 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346
KPDII+FNLLIDSYGK+Q FDKMEQVFKSL+ SKE+PTLPTFNSMI NYGKARL+ KAE
Sbjct: 269 KPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEE 328
Query: 347 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406
VF+KM M Y PS++T E +I MYG+CD VS+AREIFD + GK+++VSTLNAML+ YC
Sbjct: 329 VFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYC 388
Query: 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 466
+NGLP EADLLFE++ NM V PDS+TYKLLYKAYTKA+ KEL++KLLK M++ GI+PNKR
Sbjct: 389 INGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKLLKNMDKAGIIPNKR 448
Query: 467 FFLEALETFSSSL-----AGSQSGSAKTD 490
FFL+AL T SS A +++GS +D
Sbjct: 449 FFLDALGTIGSSQEKPEPARTRTGSRNSD 477
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/432 (72%), Positives = 372/432 (86%)
Query: 47 IPLSLRTRPRTGICCVWTRPRSKRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKV 106
+P S++ T + C+ TRP K G K++ E++ELVR ++R+FSDKEPL++TL+KYV+V
Sbjct: 29 LPSSIKKAVSTRVVCISTRPSRKFGVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYVRV 88
Query: 107 VRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMW 166
+R+EHCFLLFEELGK DKWL+CLEVFRWMQKQRWYIAD G+YSKLI++MGKKGQ R+AMW
Sbjct: 89 MRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMW 148
Query: 167 LFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226
LFSEMRNSGCRPD SVYNALITAHLH++DKAKAL K L YF+KMKGMERCKPNIVTYNIL
Sbjct: 149 LFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNIL 208
Query: 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 286
RA AQA VDQVN LFK+L ES+++ DIYTYNGVMDAYGKNG IKEME +L+RMKSNQ
Sbjct: 209 TRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQI 268
Query: 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346
KPDII+FNLLIDSYGK+Q FDKMEQVFKSL+ SKE+PTLPTFNSMI NYGKARL+ KAE
Sbjct: 269 KPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLREKAEE 328
Query: 347 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406
VF+KM M Y PS++T E +I MYG+CD VS+AREIFD + GK+++VSTLNAML+ YC
Sbjct: 329 VFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNSGKEVRVSTLNAMLDVYC 388
Query: 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 466
+NGLP EADLLFE++ NM V PDS+TYKLLYKAYTKA+ KEL++KLLK M++ GI+PNKR
Sbjct: 389 INGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELLEKLLKNMDKAGIIPNKR 448
Query: 467 FFLEALETFSSS 478
FFL+AL T SS
Sbjct: 449 FFLDALGTIGSS 460
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/456 (68%), Positives = 372/456 (81%), Gaps = 6/456 (1%)
Query: 40 YNFTHRHIP--LSLRTRPRTGICCVWTRPRSKRGRKSEELESKELVRVLMRSFSDKEPLV 97
Y F H P +++ TR I CV R R + +++ E++ELVR+L R SDKEPL+
Sbjct: 14 YPFPKIHYPPYITIPTR----ISCVSNPTRINRKQTTDQSETQELVRLLTRKISDKEPLL 69
Query: 98 RTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGK 157
+TLNKYVK+VR+EHCFLLFEELGK DKWLQCLEVFRWMQ+QRWYIAD G+YSKLI+VMGK
Sbjct: 70 KTLNKYVKLVRTEHCFLLFEELGKHDKWLQCLEVFRWMQRQRWYIADNGVYSKLISVMGK 129
Query: 158 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK 217
KGQ RLAMWLFSEMRN+GCRPD SVYN+LI+AHLH+RDK+KAL KALGYF+KMK ERCK
Sbjct: 130 KGQIRLAMWLFSEMRNTGCRPDTSVYNSLISAHLHSRDKSKALVKALGYFEKMKTTERCK 189
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
PNIVTYNILLRA AQAR+V+QVN LFK+L ES ++PDIYT+NGVMD YGKNGMI+EMESV
Sbjct: 190 PNIVTYNILLRAFAQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESV 249
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337
L RMKSNQ K D+IT+NLLIDSYGK+Q FDKMEQVFKSL SKEKPTLPTFNSMI+NYGK
Sbjct: 250 LVRMKSNQVKLDLITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLPTFNSMILNYGK 309
Query: 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST 397
ARL+ KAE VFQ MT M YTPSF+T+E +I MYG C VS A E+FD+L + +KVST
Sbjct: 310 ARLKDKAENVFQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVELFDQLIESKVPIKVST 369
Query: 398 LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457
LNAML+ YC+NGL EAD LF + ++ + PD++TYKLLYKAYTKAN KEL+ KLLK+M+
Sbjct: 370 LNAMLDVYCINGLQQEADSLFTRAKSIKIFPDATTYKLLYKAYTKANSKELLDKLLKQMD 429
Query: 458 QNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 493
++ ++PNKRFFL+AL SS S S +A T +R
Sbjct: 430 KDSVIPNKRFFLDALGAIGSSTEKSGSANAGTGSSR 465
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 500 | ||||||
| TAIR|locus:2122561 | 563 | EMB2453 "EMBRYO DEFECTIVE 2453 | 0.848 | 0.753 | 0.738 | 1.5e-168 | |
| TAIR|locus:2081041 | 486 | PPR2 "pentatricopeptide repeat | 0.696 | 0.716 | 0.300 | 1.3e-43 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.794 | 0.460 | 0.275 | 7.9e-40 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.692 | 0.422 | 0.253 | 2.2e-34 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.684 | 0.552 | 0.272 | 1.6e-31 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.784 | 0.476 | 0.262 | 2.8e-30 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.654 | 0.532 | 0.277 | 3.2e-30 | |
| TAIR|locus:2027212 | 855 | AT1G74750 [Arabidopsis thalian | 0.64 | 0.374 | 0.252 | 5e-30 | |
| TAIR|locus:2116772 | 1112 | PGR3 "AT4G31850" [Arabidopsis | 0.686 | 0.308 | 0.276 | 3.6e-29 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.63 | 0.545 | 0.256 | 2.4e-28 |
| TAIR|locus:2122561 EMB2453 "EMBRYO DEFECTIVE 2453" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1639 (582.0 bits), Expect = 1.5e-168, P = 1.5e-168
Identities = 314/425 (73%), Positives = 358/425 (84%)
Query: 52 RTRPRTGICCVWTRPRSKRG-RKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSE 110
R RT I C R K R+S E E++ LVR LM SD+EPLV+TL+KYVKVVR +
Sbjct: 39 RRSTRTRITCGAISSRRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCD 98
Query: 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170
HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYI D G+YSKLI+VMGKKGQTR+AMWLFSE
Sbjct: 99 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSE 158
Query: 171 MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230
M+NSGCRPD SVYNALITAHLHTRDKAKAL K GY KMKG+ERC+PN+VTYNILLRA
Sbjct: 159 MKNSGCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAF 218
Query: 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 290
AQ+ VDQVNALFK+L S ++PD+YT+NGVMDAYGKNGMIKEME+VL+RM+SN+CKPDI
Sbjct: 219 AQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDI 278
Query: 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350
ITFN+LIDSYGK+Q F+KMEQ FKSLM SKEKPTLPTFNSMIINYGKAR+ KAE+VF+K
Sbjct: 279 ITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKK 338
Query: 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410
M M Y PSFITYEC+I MYGYC +VSRAREIF+E+ + + +K STLNAMLE YC NGL
Sbjct: 339 MNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGL 398
Query: 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 470
EAD LF N+ V PD+STYK LYKAYTKA+MKE VQ L+K+ME++GIVPNKRFFLE
Sbjct: 399 YIEADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLE 458
Query: 471 ALETF 475
ALE F
Sbjct: 459 ALEVF 463
|
|
| TAIR|locus:2081041 PPR2 "pentatricopeptide repeat 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 106/353 (30%), Positives = 176/353 (49%)
Query: 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY 183
+WLQ LEVF +++Q +Y G Y KL+ ++GK GQ A LF EM G P +Y
Sbjct: 103 QWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELY 162
Query: 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF 243
AL+ A+ TR + + A KMK +C+P++ TY+ LL+AC A D V++L+
Sbjct: 163 TALLAAY--TR--SNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLY 218
Query: 244 KELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK-SNQCKPDIITFNLLIDSYGK 302
KE+ E ++ P+ T N V+ YG+ G +ME VLS M S CKPD+ T N+++ +G
Sbjct: 219 KEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLVSTACKPDVWTMNIILSVFGN 278
Query: 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 362
D ME ++ + +P TFN +I +YGK R+ K V + M +++ + T
Sbjct: 279 MGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTST 338
Query: 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422
Y II + + FD++ G T ++ Y GL + + +
Sbjct: 339 YNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQLAA 398
Query: 423 NMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+ +++ Y + A KA+ ++++ RM++ V + R F +E +
Sbjct: 399 KFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAY 451
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 7.9e-40, P = 7.9e-40
Identities = 113/410 (27%), Positives = 204/410 (49%)
Query: 69 KRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEEL-GKSDKWLQ 127
++G+ S ++ES L+ L S + + R L+ + + L+F+E G+ D W +
Sbjct: 68 EKGKYSYDVES--LINKLS-SLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGD-WQR 123
Query: 128 CLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 187
L +F++MQ+Q W + IY+ +I+++G++G + +F EM + G Y ALI
Sbjct: 124 SLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALI 183
Query: 188 TAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-NVDQVNALFKEL 246
A+ + +L +MK E+ P+I+TYN ++ ACA+ + + + LF E+
Sbjct: 184 NAY----GRNGRYETSLELLDRMKN-EKISPSILTYNTVINACARGGLDWEGLLGLFAEM 238
Query: 247 -HESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305
HE I PDI TYN ++ A G+ E E V M PD+ T++ L++++GK +
Sbjct: 239 RHEGI-QPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
+K+ + + P + ++N ++ Y K+ +A VF +M A TP+ TY
Sbjct: 298 LEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425
++ ++G R++F E+ D +T N ++E + G E LF +
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN 417
Query: 426 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475
+ PD TY+ + A K + E +K+L+ M N IVP+ + + +E F
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAF 467
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 89/351 (25%), Positives = 160/351 (45%)
Query: 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173
++ LGK + +F +Q+ + + D Y+ LI+ G+ R A+ +F +M
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSL-DVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA 233
GC+P YN ++ K +KMK + P+ TYN L+ C +
Sbjct: 237 DGCKPTLITYNVILNVF---GKMGTPWNKITSLVEKMKS-DGIAPDAYTYNTLITCCKRG 292
Query: 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293
+ +F+E+ + + D TYN ++D YGK+ KE VL+ M N P I+T+
Sbjct: 293 SLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352
Query: 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353
N LI +Y + D+ ++ + KP + T+ +++ + +A A +F++M
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
P+ T+ I MYG + +IFDE++ G + T N +L + NG+ +E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+F+ G P+ T+ L AY++ E + +RM G+ P+
Sbjct: 473 VSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPD 523
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 96/352 (27%), Positives = 173/352 (49%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
+ L KS L++FR M+ +R A YS +I + K G A+ LF+EM
Sbjct: 216 VLNRLCKSGNSALALDLFRKME-ERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMK 274
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
G + D Y++LI L K AK L ++M G P++VT++ L+ +
Sbjct: 275 GIKADVVTYSSLIGG-LCNDGKWDDGAKML---REMIG-RNIIPDVVTFSALIDVFVKEG 329
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 294
+ + L+ E+ +APD TYN ++D + K + E + M S C+PDI+T++
Sbjct: 330 KLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYS 389
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
+LI+SY K + D ++F+ + P T+N++++ + ++ A+ +FQ+M +
Sbjct: 390 ILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSR 449
Query: 355 KYTPSFITYECIITMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412
PS +TY ++ G CDN +++A EIF+++ K + + N ++ C
Sbjct: 450 GVPPSVVTYGILLD--GLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVD 507
Query: 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+A LF + + GV PD TY ++ K L ++M+++G P+
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPD 559
|
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| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 2.8e-30, P = 2.8e-30
Identities = 106/404 (26%), Positives = 183/404 (45%)
Query: 65 RPRSKRGRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDK 124
R R + R ++ E+V LM + + E + LN +V ++ +L EL +
Sbjct: 64 RIRVENDRFQKDWSVSEVVDRLM-ALNRWEEVDGVLNSWVGRFARKNFPVLIRELSRRGC 122
Query: 125 WLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN 184
C+ VF+WM+ Q+ Y A IY+ +I + + A LF EM+ C+PD Y+
Sbjct: 123 IELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYD 182
Query: 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFK 244
ALI AH +A A+ M P+ TYN L+ AC + N + + K
Sbjct: 183 ALINAH----GRAGQWRWAMNLMDDML-RAAIAPSRSTYNNLINACGSSGNWREALEVCK 237
Query: 245 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 304
++ ++ + PD+ T+N V+ AY + S MK + +PD TFN++I K
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLG 297
Query: 305 AFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYG-KARLQGKAEYVFQKMTAMKYTPSFI 361
+ +F S+ + +P + TF S++ Y K ++ VF+ M A P+ +
Sbjct: 298 QSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIEN-CRAVFEAMVAEGLKPNIV 356
Query: 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421
+Y ++ Y A + ++ + G V + +L +Y + P +A +F
Sbjct: 357 SYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMM 416
Query: 422 HNMGVTPDSSTYKLLYKAY-TKANMKELVQKLLKRMEQNGIVPN 464
P+ TY L AY + + E V+ + ++MEQ+GI PN
Sbjct: 417 RKERRKPNVVTYNALIDAYGSNGFLAEAVE-IFRQMEQDGIKPN 459
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| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 3.2e-30, P = 3.2e-30
Identities = 94/339 (27%), Positives = 167/339 (49%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L + M+K + AD IYS +I + K A+ LF+EM N G RPD Y++LI+
Sbjct: 225 LNLLNKMEKGK-IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248
L + ++ L + K PN+VT+N L+ A A+ + + LF E+ +
Sbjct: 284 C-LCNYGRWSDASRLLSDMLERK----INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQ 338
Query: 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-RQAFD 307
+ P+I TYN +++ + + + E + + + M S C PD++T+N LI+ + K ++ D
Sbjct: 339 RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVD 398
Query: 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367
ME +F+ + T+ ++I + +A A+ VF++M + P+ +TY ++
Sbjct: 399 GME-LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLL 457
Query: 368 TMYGYCDN--VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425
G C N + +A +F+ L K + + T N M E C G + LF + G
Sbjct: 458 D--GLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515
Query: 426 VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
V PD Y + + K +KE L +M+++G +P+
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPD 554
|
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| TAIR|locus:2027212 AT1G74750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 5.0e-30, P = 5.0e-30
Identities = 82/325 (25%), Positives = 160/325 (49%)
Query: 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178
L + D + L F W+++Q + D Y+ ++ +G+ Q L EM GC+P
Sbjct: 333 LKQMDNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKP 392
Query: 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ 238
+ YN LI H+ +A L +A+ F +M+ C+P+ VTY L+ A+A +D
Sbjct: 393 NTVTYNRLI----HSYGRANYLKEAMNVFNQMQEAG-CEPDRVTYCTLIDIHAKAGFLDI 447
Query: 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298
+++ + E+ L+PD +TY+ +++ GK G + + M C P+++TFN++I
Sbjct: 448 AMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIA 507
Query: 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358
+ K + ++ ++++ + ++ +P T++ ++ G +AE VF +M + P
Sbjct: 508 LHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVP 567
Query: 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418
Y ++ ++G NV +A + + + + G V T N++L + +EA L
Sbjct: 568 DEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLL 627
Query: 419 ENSHNMGVTPDSSTYKLLYKAYTKA 443
++ +G+ P TY LL T A
Sbjct: 628 QSMLALGLHPSLQTYTLLLSCCTDA 652
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| TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 97/351 (27%), Positives = 161/351 (45%)
Query: 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174
L L KS + +EV+R M + + YS L+ +GK+ M L EM
Sbjct: 194 LIHLLLKSRFCTEAMEVYRRMILEG-FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETL 252
Query: 175 GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR 234
G +P+ VY T + +A + +A ++M E C P++VTY +L+ A AR
Sbjct: 253 GLKPN--VYT--FTICIRVLGRAGKINEAYEILKRMDD-EGCGPDVVTYTVLIDALCTAR 307
Query: 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN 294
+D +F+++ PD TY ++D + N + ++ S M+ + PD++TF
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFT 367
Query: 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354
+L+D+ K F + + P L T+N++I + A +F M ++
Sbjct: 368 ILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL 427
Query: 355 KYTPSFITYECIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413
P+ TY I YG D+VS A E F+++ G + NA L + G E
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVS-ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDRE 486
Query: 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
A +F ++G+ PDS TY ++ K Y+K + KLL M +NG P+
Sbjct: 487 AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPD 537
|
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| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 330 (121.2 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 83/324 (25%), Positives = 162/324 (50%)
Query: 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202
A+ IYS +I + K A+ LF+EM N G RP+ Y++LI+ L ++ ++
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC-LCNYERWSDASR 316
Query: 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262
L + K PN+VT+N L+ A + + + L+ E+ + + PDI+TY+ ++
Sbjct: 317 LLSDMIERK----INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 372
Query: 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322
+ + + + E + + M S C P+++T+N LI+ + K + D+ ++F+ +
Sbjct: 373 NGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLV 432
Query: 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--VSRAR 380
T+ ++I + +AR A+ VF++M + P+ +TY ++ G C N + +A
Sbjct: 433 GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLD--GLCKNGKLEKAM 490
Query: 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440
+F+ L + + + T N M+E C G + LF + GV PD Y + +
Sbjct: 491 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGF 550
Query: 441 TKANMKELVQKLLKRMEQNGIVPN 464
+ +KE L ++M ++G +P+
Sbjct: 551 CRKGLKEEADALFRKMREDGPLPD 574
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SV96 | PP358_ARATH | No assigned EC number | 0.7350 | 0.866 | 0.7690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00019417001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (489 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 500 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-20 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 6e-20
Identities = 87/343 (25%), Positives = 155/343 (45%), Gaps = 18/343 (5%)
Query: 129 LEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188
L V R +Q + AD +Y+ LI+ K G+ +F EM N+G + + ALI
Sbjct: 457 LRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQ---VNALFKE 245
+A +AKA G + M+ + KP+ V +N L+ AC Q+ VD+ V A K
Sbjct: 516 GC----ARAGQVAKAFGAYGIMRS-KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA 570
Query: 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305
I PD T +M A G + + V + K + + ++S ++
Sbjct: 571 ETHPID-PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629
Query: 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365
+D ++ + KP F++++ G A KA + Q ++Y
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS- 688
Query: 366 IITMYGYCDNV---SRAREIFDELSKLGKDMKVSTLNAMLEAYC-MNGLPTEADLLFENS 421
++ G C N +A E+++++ + VST+NA++ A C N LP ++L E
Sbjct: 689 --SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE-M 745
Query: 422 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+G+ P++ TY +L A + + ++ LL + +++GI PN
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 4e-13
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302
PD+ TYN ++D Y K G ++E + + MK KP++ T+++LID K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 22/193 (11%)
Query: 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF--KELHESIL----APDI 255
+AL +F++M KPN VT L ACA+ + AL KE+H +L D
Sbjct: 473 EALIFFRQMLL--TLKPNSVTLIAALSACAR------IGALMCGKEIHAHVLRTGIGFDG 524
Query: 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315
+ N ++D Y + G M ++ N + D++++N+L+ Y ++F
Sbjct: 525 FLPNALLDLYVRCG---RMNYAWNQF--NSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY--TPSFITYECIITMYGYC 373
++ S P TF S++ ++ + + F M KY TP+ Y C++ + G
Sbjct: 580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE-KYSITPNLKHYACVVDLLGRA 638
Query: 374 DNVSRAREIFDEL 386
++ A +++
Sbjct: 639 GKLTEAYNFINKM 651
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Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 6e-11
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267
P++VTYN L+ + V++ LF E+ + + P++YTY+ ++D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 9e-09
Identities = 55/254 (21%), Positives = 104/254 (40%), Gaps = 14/254 (5%)
Query: 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277
P + T+N+L+ CA ++++D + + + E+ L D Y ++ K+G + M V
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS-----LMHSKE-KPTLPTFNSM 331
M + + ++ TF LID + QV K+ +M SK KP FN++
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCA------RAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 332 IINYGKARLQGKAEYVFQKMTAMKY--TPSFITYECIITMYGYCDNVSRAREIFDELSKL 389
I G++ +A V +M A + P IT ++ V RA+E++ + +
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELV 449
+ + G A ++++ GV PD + L A +
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 450 QKLLKRMEQNGIVP 463
++L+ + GI
Sbjct: 669 FEILQDARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 9e-09
Identities = 58/255 (22%), Positives = 112/255 (43%), Gaps = 28/255 (10%)
Query: 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281
TY+ L+ AC +++ V A++ + S PD Y N V+ + K GM+ + + M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 282 KSNQCKPDIITFNL----LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI---IN 334
++ ++ L+D+ R+AF +F+ + TF M+
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAF----ALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYEC-IITMYGYCDNVSRAREIFDELSKLGKDM 393
G AR G+ + T + +F++ C +I MY C ++ AR +FD + +
Sbjct: 237 LGSARA-GQQLHCCVLKTGV-VGDTFVS--CALIDMYSKCGDIEDARCVFDGMPE----K 288
Query: 394 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453
N+ML Y ++G EA L+ + GV+ D T+ ++ + +++ + E ++
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348
Query: 454 KRMEQNG----IVPN 464
+ + G IV N
Sbjct: 349 AGLIRTGFPLDIVAN 363
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-08
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 232
PD YN LI + K + +AL F +MK KPN+ TY+IL+ +
Sbjct: 1 PDVVTYNTLIDGYC----KKGKVEEALKLFNEMK-KRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 4e-07
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI 290
TYN ++D K G ++E + MK +PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203
D +S L+ V G G A + + R G + Y++L+ A + AK KA
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN----AKNWKKA 703
Query: 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD 263
L ++ +K + + +P + T N L+ A + + + + E+ L P+ TY+ ++
Sbjct: 704 LELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297
A + +LS+ K + KP+++ +
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 73/366 (19%), Positives = 140/366 (38%), Gaps = 25/366 (6%)
Query: 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC 176
E+L + + LE+F ++ + Y L+ R ++ + +SG
Sbjct: 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF 154
Query: 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 236
PD + N ++ H+ K L A F +M ER N+ ++ ++ A N
Sbjct: 155 EPDQYMMNRVLLMHV----KCGMLIDARRLFDEMP--ER---NLASWGTIIGGLVDAGNY 205
Query: 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS-RMKSNQCKPDIITFNL 295
+ ALF+E+ E + T+ ++ A G + + + +K+ D
Sbjct: 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG-DTFVSCA 264
Query: 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY---VFQKMT 352
LID Y K + VF + EK T+ +NSM+ Y L G +E ++ +M
Sbjct: 265 LIDMYSKCGDIEDARCVFDGM---PEKTTV-AWNSMLAGYA---LHGYSEEALCLYYEMR 317
Query: 353 AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412
+ T+ +I ++ + A++ L + G + + A+++ Y G
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377
Query: 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472
+A +F+ + ++ L Y ++ +RM G+ PN FL L
Sbjct: 378 DARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 473 ETFSSS 478
S
Sbjct: 434 SACRYS 439
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 82/430 (19%), Positives = 141/430 (32%), Gaps = 129/430 (30%)
Query: 141 YIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200
+ D + + LI + K G A +F M R D +NA+I+ + +
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGE----C 269
Query: 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL----APDIY 256
+ L F M+ + P+++T ++ AC + L +E+H ++ A D+
Sbjct: 270 LEGLELFFTMRELS-VDPDLMTITSVISACELLGDE----RLGREMHGYVVKTGFAVDVS 324
Query: 257 TYNGVMDAYGKNGMIKEMESVLSR-------------------------------MKSNQ 285
N ++ Y G E E V SR M+ +
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 286 CKPDIITF-----------------------------------NLLIDSYGKRQAFDKME 310
PD IT N LI+ Y K + DK
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY------- 363
+VF ++ EK + ++ S+I +A F++M + P+ +T
Sbjct: 445 EVFHNI---PEKDVI-SWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSAC 499
Query: 364 ----------------------------ECIITMYGYCDNVSRAREIFDELSKLGKDMKV 395
++ +Y C ++ A F+ K V
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DV 554
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
+ N +L Y +G + A LF GV PD T+ L A +++ M +
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614
Query: 456 MEQN-GIVPN 464
ME+ I PN
Sbjct: 615 MEEKYSITPN 624
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190
D Y+ LI KKG+ A+ LF+EM+ G +P+ Y+ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 71/349 (20%), Positives = 125/349 (35%), Gaps = 68/349 (19%)
Query: 159 GQTRLAMWLFSEMRNSGCRPDPSVYNALI-------------TAHLHTRDKAKALAKALG 205
GQ A+ L M+ D Y AL +L LG
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 206 ------------------YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH 247
F KM ER ++ ++N+L+ A+A D+ L+ +
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP--ER---DLFSWNVLVGGYAKAGYFDEALCLYHRML 179
Query: 248 ESILAPDIYTYNGVMDAYG---KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK-- 302
+ + PD+YT+ V+ G +E+ + + R D+ N LI Y K
Sbjct: 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFEL---DVDVVNALITMYVKCG 236
Query: 303 -----RQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYGKARLQGKAEYVFQKMTAMK 355
R FD+M P ++N+MI Y + + +F M +
Sbjct: 237 DVVSARLVFDRM-------------PRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 356 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415
P +T +I+ + RE+ + K G + VS N++++ Y G EA+
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464
+F T D+ ++ + Y K + + + MEQ+ + P+
Sbjct: 344 KVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMI 332
PD++T+N LID Y K+ ++ ++F M + KP + T++ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNE-MKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQC 286
TYN ++ Y K G ++E + MK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 395 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442
V T N +++ YC G EA LF G+ P+ TY +L K
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 6e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDI 255
VTYN L+ +A V++ LFKE+ E + PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 255 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 288
+ TYN ++ A K G +VL MK++ KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 37/175 (21%), Positives = 80/175 (45%), Gaps = 7/175 (4%)
Query: 242 LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301
L+ E+ +S ++ D +T++ ++ + + +++ + + + DI+ L+D Y
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 361
K + VF + L ++N++I YG KA +F++M A P+ +
Sbjct: 372 KWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN--AMLEAYCMNGLPTEA 414
T+ +++ Y + EIF +S+ + +K ++ M+E GL EA
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 251 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 282
L PD+ TYN ++D + G + E +L M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 216 CKPNIVTYNILLRACAQARNVDQVNALFKE 245
KP++VTYN L+ +A VD+ L E
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 500 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.82 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.55 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.35 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.1 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.1 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.1 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.02 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.97 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.92 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.83 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.79 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.78 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.77 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.72 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.72 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.71 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.64 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.56 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.54 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.53 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.5 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.42 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.36 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.33 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.33 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.1 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.95 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.79 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.79 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.69 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.68 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.66 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.65 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.56 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.52 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.48 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.48 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.47 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.46 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.29 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.16 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.07 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.92 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.89 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.85 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.85 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.83 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.79 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.78 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.78 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.78 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.73 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.52 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.46 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.43 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.31 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.31 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.24 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.23 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.22 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 96.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.05 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.03 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.99 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.97 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.91 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.84 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.78 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.72 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.61 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.55 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.53 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.39 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.39 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.72 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.69 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.6 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.58 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.3 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 94.26 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.22 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.17 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.16 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.14 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.97 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.96 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.9 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.21 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.01 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.67 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.63 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.62 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.15 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.82 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.74 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.57 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.4 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.77 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.71 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.63 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.53 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.45 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.96 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.92 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.43 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.26 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.61 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.55 | |
| PF11848 | 48 | DUF3368: Domain of unknown function (DUF3368); Int | 86.21 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.2 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.7 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.63 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.29 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.26 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.98 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.94 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.47 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 84.22 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.98 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.58 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.45 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.5 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.88 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.56 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 81.53 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 80.38 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.36 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.21 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=476.51 Aligned_cols=398 Identities=21% Similarity=0.331 Sum_probs=366.1
Q ss_pred CCccchhHHHHHHHHHHhcC-CCchH--HHHHHHhhhccCcch---------------HHHHHHHHcccCCHHHHHHHHH
Q 010807 72 RKSEELESKELVRVLMRSFS-DKEPL--VRTLNKYVKVVRSEH---------------CFLLFEELGKSDKWLQCLEVFR 133 (500)
Q Consensus 72 ~~~~~~~a~~l~~~l~~~~~-~~~~~--~~~l~~~~~~~~~~~---------------~~~l~~~l~~~~~~~~A~~~~~ 133 (500)
+.|...+|..+++.|.+... ..... ..++..+.+.+..++ +..++..+.+.|+++.|+++|+
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 45677888999998876531 11111 223344444433333 3456777888999999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
.|.+.+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+ +.|++++|+++|++|..
T Consensus 462 ~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~----k~G~~eeAl~lf~~M~~- 535 (1060)
T PLN03218 462 LVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA----RAGQVAKAFGAYGIMRS- 535 (1060)
T ss_pred HHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----HCcCHHHHHHHHHHHHH-
Confidence 999987 899999999999999999999999999999999999999999999999999 77889999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHE--SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 291 (500)
.++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 78999999999999999999999999999999976 6799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+.++|.++++.|.+.|+.||..+|+.+|.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
+.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|...|+.||..||+.++.+|.+.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 452 LLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 452 ~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
++++|.+.|+.||..+|..++..|
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999998654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=477.46 Aligned_cols=368 Identities=17% Similarity=0.281 Sum_probs=350.2
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
+..+.+.|.+++|+.+|+.|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 413 i~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---- 483 (1060)
T PLN03218 413 FKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---- 483 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Confidence 3344455667888888888754 7999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+.|++++|.++|++|.. .|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 484 k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred hCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77889999999999998 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 276 SVLSRMKS--NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 276 ~~~~~m~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999986 6889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCccchhhhhh
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLTR 493 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~l~~ 493 (500)
+.||.+|++.|++++|.++|++|.+.|+.||..||..++.+|++.|..+.......++.+
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988766655555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=447.13 Aligned_cols=382 Identities=17% Similarity=0.236 Sum_probs=209.4
Q ss_pred CCCccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHH
Q 010807 71 GRKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSK 150 (500)
Q Consensus 71 ~~~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 150 (500)
.+.+...+|.+++..+....+.. .+......++..+.+.++++.|.+++..|.+.+ +.||..+|+.
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~-------------~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFT-------------LPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 34455666666666665432110 011122334444445555555555555555544 5555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 230 (500)
++.+|++.|++++|.++|++|. .||..+|+++|.+|+ +.|++++|+++|++|.+ .|+.|+..+|+.++.+|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~----~~g~~~~A~~lf~~M~~-~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLV----DAGNYREAFALFREMWE-DGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHH----HCcCHHHHHHHHHHHHH-hCCCCChhhHHHHHHHH
Confidence 5555555555555555555553 255555555555555 44445555555555554 34555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 310 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (500)
++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHH
Confidence 55555555555555555555555555555555555555555555555555532 35555555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 555555555555555555555555555555555555555555555555555555555555555555555555555532
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPNKRFFL 469 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~ 469 (500)
||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|.+ .|+.|+..+|.
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 345555555555555555555555555555555555555555555555555555555555555543 35555555555
Q ss_pred HHHHHHhcCCCCCC
Q 010807 470 EALETFSSSLAGSQ 483 (500)
Q Consensus 470 ~ll~~~~~~g~~~~ 483 (500)
.++..+++.|..+.
T Consensus 467 ~li~~l~r~G~~~e 480 (697)
T PLN03081 467 CMIELLGREGLLDE 480 (697)
T ss_pred hHHHHHHhcCCHHH
Confidence 55555555555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-54 Score=441.13 Aligned_cols=365 Identities=18% Similarity=0.258 Sum_probs=348.5
Q ss_pred hHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010807 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190 (500)
Q Consensus 111 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 190 (500)
....++..+.+.|++++|+++|++|...+++.||..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34567788888999999999999999877688999999999999999999999999999999999999999999999999
Q ss_pred HcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 010807 191 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 270 (500)
+ +.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|.
T Consensus 169 ~----k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 169 V----KCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred h----cCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9 7788999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++| ..+|..+|+.+|.+|++.|+.++|..+|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m----~~~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 456999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 430 (500)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 5799
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCccchhhhh
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSAKTDLT 492 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~~~~l~ 492 (500)
.+|+.||.+|++.|+.++|.++|++|.+.|+.||..||..++.+|++.|..+.+......+.
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998877665555554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=447.68 Aligned_cols=365 Identities=18% Similarity=0.222 Sum_probs=215.5
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
+..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.+++..+.+++..|.+.|+.||..+|+.+|.+|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~---- 233 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV---- 233 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh----
Confidence 333444556666666666665543 555555555555444444444444444444444444445555555555555
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.
T Consensus 234 k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 234 KCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred cCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 5566777777777776 35667777777777777777777777777777777777777777776666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH-------------------------------HhCCCCCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL-------------------------------MHSKEKPT 324 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~-------------------------------~~~~~~~~ 324 (500)
+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++| .+.|+.||
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 66666666666666666666666666555555555555554 44444455
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-------------
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK------------- 391 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~------------- 391 (500)
..||+.++.+|++.|+.++|.++++.|.+.|+.|+..+|+.|+.+|+++|++++|.++|++|.+.++
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 5555555555555555555555555555555555555556666666666666666666666643211
Q ss_pred --------------------------------------------------------------------------------
Q 010807 392 -------------------------------------------------------------------------------- 391 (500)
Q Consensus 392 -------------------------------------------------------------------------------- 391 (500)
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence
Q ss_pred --CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHH
Q 010807 392 --DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME-QNGIVPNKRFF 468 (500)
Q Consensus 392 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~ 468 (500)
.+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|
T Consensus 549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 234444555555556666666666666666666666666666666666666666666666666665 44666666666
Q ss_pred HHHHHHHhcCCCCCCCccchhh
Q 010807 469 LEALETFSSSLAGSQSGSAKTD 490 (500)
Q Consensus 469 ~~ll~~~~~~g~~~~~~~~~~~ 490 (500)
..++..+++.|..+.......+
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 6666666666655444443333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-52 Score=436.55 Aligned_cols=407 Identities=18% Similarity=0.214 Sum_probs=341.5
Q ss_pred cccCcCCcCCCCccchhHHHHHHHHHHhc--CCCch-----------------------------------HHHHHHHhh
Q 010807 62 VWTRPRSKRGRKSEELESKELVRVLMRSF--SDKEP-----------------------------------LVRTLNKYV 104 (500)
Q Consensus 62 ~~~~~~~~~~~~~~~~~a~~l~~~l~~~~--~~~~~-----------------------------------~~~~l~~~~ 104 (500)
.|........+.+..++|..+++.+.+.. |+... ...++..|.
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 44444555677788899999998887543 33222 234455666
Q ss_pred hccCcchHHHHHH---------------HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010807 105 KVVRSEHCFLLFE---------------ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFS 169 (500)
Q Consensus 105 ~~~~~~~~~~l~~---------------~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 169 (500)
+.++.+.+..+|+ .+.+.|++++|+++|+.|.+.+ +.||..+|+.++.+|++.|+.+.|.+++.
T Consensus 234 k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred cCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 6666666555444 4455678888888888888776 78888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 170 EMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 170 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.|.+.|+.||..+|+++|.+|+ +.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~----k~g~~~~A~~vf~~m~-----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYL----SLGSWGEAEKVFSRME-----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHH----hcCCHHHHHHHHhhCC-----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888 7778999999999987 578899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010807 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 329 (500)
Q Consensus 250 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (500)
|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~ 459 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWT 459 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988884 34666777
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCC---------------------------------------------------
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTP--------------------------------------------------- 358 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--------------------------------------------------- 358 (500)
.+|.+|++.|+.++|..+|++|.. ++.|
T Consensus 460 ~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G 538 (857)
T PLN03077 460 SIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538 (857)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcC
Confidence 777777777777777777777754 2334
Q ss_pred --------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH-h
Q 010807 359 --------------SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH-N 423 (500)
Q Consensus 359 --------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~ 423 (500)
|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +
T Consensus 539 ~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 539 RMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred CHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 4556778888888999999999999999999999999999999999999999999999999999 6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCcc
Q 010807 424 MGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGS 486 (500)
Q Consensus 424 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~ 486 (500)
.|+.|+..+|+.++.+|.+.|++++|.+++++| .+.||..+|..++.+|...++.+-...
T Consensus 619 ~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 899999999999999999999999999999998 589999999999999988777654443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-22 Score=215.92 Aligned_cols=349 Identities=12% Similarity=0.075 Sum_probs=259.7
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
+.|++++|+..|+.+.+.. +.+...+..++..+.+.|++++|..+++.+.+.. +.+...|..+..++. ..|++
T Consensus 545 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~ 617 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL----AAGDL 617 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH----HcCCH
Confidence 3456666666666665543 4455566666777777777777777777766542 345666777777776 55667
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
++|+..|+++.... +.+...+..+...+.+.|++++|..+|+.+.+.... +..++..+...+...|++++|.++++.
T Consensus 618 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 618 NKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777776432 445666777777777777777777777777665332 566777777777778888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 360 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 360 (500)
+.+... .+...+..+...+...|++++|.+.|+.+...+ |+..++..++.++...|++++|...++.+.+.. +.+.
T Consensus 695 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~ 770 (899)
T TIGR02917 695 LQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA 770 (899)
T ss_pred HHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 777643 366677777788888888888888888887754 344667777888888888888888888887764 4567
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
..+..+...|...|++++|.++|+++.+.. +.+..+++.+...+...|+ .+|+.+++++.... +-+..++..+...+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 788888888888999999999999888875 3578888888999999888 88999999887763 33566777888899
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCccc
Q 010807 441 TKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSGSA 487 (500)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~~~ 487 (500)
...|++++|.++++++.+.+.. +..++..+...+...|+.+.....
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKE 893 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999987654 888899999999988876554433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-22 Score=212.62 Aligned_cols=369 Identities=11% Similarity=0.027 Sum_probs=308.8
Q ss_pred CccchhHHHHHHHHHHhcCCCch-HHHHHHHhhhccCcchHHHH------------------HHHHcccCCHHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEP-LVRTLNKYVKVVRSEHCFLL------------------FEELGKSDKWLQCLEVFR 133 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l------------------~~~l~~~~~~~~A~~~~~ 133 (500)
.+...+|...+..+++..+.... +..+...+.+.++.+.+... ...+.+.|++++|+.+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566777777777765544332 23333344444554444433 344566799999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
.+.+. .+.+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+. ..|++++|...|+++...
T Consensus 592 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 592 EAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----VMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----HcCCHHHHHHHHHHHHhc
Confidence 99876 36678899999999999999999999999998763 345667778888887 778899999999999864
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 293 (500)
.+.+..++..++..+...|++++|.++++.+.+.+. .+...+..+...+.+.|++++|.+.|+.+...+ |+..++
T Consensus 665 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 665 --KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 256688999999999999999999999999988764 377888889999999999999999999999874 444777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+..++.+.|++++|.+.++.+.+..+ .+...+..+...|...|++++|...|+++.+.. +.+..+++.+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 8899999999999999999999988743 478899999999999999999999999999875 56788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
|+ ++|+..++++.+... -+..++..+...+...|++++|..+|+++.+.+. .+..++..+..++.+.|++++|.+++
T Consensus 818 ~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred Cc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99 889999999988643 3677888999999999999999999999999873 48999999999999999999999999
Q ss_pred HHHHH
Q 010807 454 KRMEQ 458 (500)
Q Consensus 454 ~~m~~ 458 (500)
++|.+
T Consensus 895 ~~~~~ 899 (899)
T TIGR02917 895 DKLLN 899 (899)
T ss_pred HHHhC
Confidence 99863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=187.01 Aligned_cols=301 Identities=12% Similarity=0.033 Sum_probs=199.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHH
Q 010807 155 MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQ 232 (500)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~ 232 (500)
+...|++++|+..|.++.+.+ +.+..++..+...+. ..|++++|+.+++.+.......+ ....+..+...|.+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~----~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFR----RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH----HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 445556666666666665542 122334555555555 45556666666666554211111 12345666667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhccCCHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD----IITFNLLIDSYGKRQAFDK 308 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~ 308 (500)
.|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776542 23556667777777777777777777777766543322 1234556667777888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
|++.|+++.+... .+...+..+...+.+.|++++|..+++++.+.+......+++.++.+|...|++++|...++.+.+
T Consensus 199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888776532 245667777788888888888888888877653222245677788888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCH
Q 010807 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 389 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++|.+.++.|++
T Consensus 278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 54 45556677888888888888888888887765 5787788877776654 45788888888888887777776
Q ss_pred H
Q 010807 466 R 466 (500)
Q Consensus 466 ~ 466 (500)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-21 Score=186.98 Aligned_cols=309 Identities=10% Similarity=0.047 Sum_probs=257.2
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCc
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD---PSVYNALITAHLHTR 194 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~ 194 (500)
.....|++++|+..|+.+.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--- 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--- 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 3446699999999999999874 55677899999999999999999999999987543222 246777788888
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCC
Q 010807 195 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGM 270 (500)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~ 270 (500)
..|++++|+.+|+++.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|+
T Consensus 119 -~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 119 -KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred -HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 778899999999999863 2567889999999999999999999999999887654332 245667778899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
+++|...|+++.+... .+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|++++|...++.
T Consensus 196 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987642 356678888999999999999999999998764443356788999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHhCCCC
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM---NGLPTEADLLFENSHNMGVT 427 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~ 427 (500)
+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..++. .|+.++++.++++|.+.++.
T Consensus 275 ~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 9886 466667788999999999999999999998886 4788899988888775 56899999999999998877
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 010807 428 PDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 428 p~~~~~~~li~~~~~~g~ 445 (500)
|++. ..|.+.|.
T Consensus 351 ~~p~------~~c~~cg~ 362 (389)
T PRK11788 351 RKPR------YRCRNCGF 362 (389)
T ss_pred CCCC------EECCCCCC
Confidence 7765 33555554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-18 Score=177.15 Aligned_cols=354 Identities=10% Similarity=-0.026 Sum_probs=277.8
Q ss_pred ccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 010807 106 VVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYN 184 (500)
Q Consensus 106 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~ 184 (500)
.+.......++..+.+.|++++|+.+++...... +.+...+..++..+...|++++|+..|+++.+. .| +...+.
T Consensus 39 ~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~ 114 (656)
T PRK15174 39 AGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVL 114 (656)
T ss_pred cccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 3444455667777888899999999999998874 555666777778888899999999999999886 44 455666
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 185 ~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
.+...+. ..|++++|+..|++..... +.+...+..+...+...|++++|...++.+......+ ...+..+ ..
T Consensus 115 ~la~~l~----~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~ 186 (656)
T PRK15174 115 LVASVLL----KSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LS 186 (656)
T ss_pred HHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HH
Confidence 6667777 7788999999999998642 5567788899999999999999999999887765443 3333333 34
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK- 343 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~- 343 (500)
+...|++++|...++.+.+....++...+..+..++.+.|++++|+..+++..+..+ .+...+..+...+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhh
Confidence 788999999999999988765444555556667888899999999999999988643 367888889999999999986
Q ss_pred ---HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 344 ---AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 344 ---a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|...++...+.. +.+...+..+...+...|++++|...+++..+..+ .+...+..+..+|.+.|++++|+..|++
T Consensus 266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 799999998864 34577899999999999999999999999998753 3577888899999999999999999999
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010807 421 SHNMGVTPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS 476 (500)
Q Consensus 421 m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 476 (500)
+... .|+.. .+..+..++...|+.++|...|++..+..-.-....|...+.++.
T Consensus 344 al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 344 LARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 8876 45543 344456788999999999999999887632222334444444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-16 Score=159.87 Aligned_cols=338 Identities=11% Similarity=0.008 Sum_probs=255.8
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC------------------ 176 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------ 176 (500)
+-..+.+.|++++|++.++...+.. +.+...|..+..+|...|++++|+..|......+-
T Consensus 166 ~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 243 (615)
T TIGR00990 166 RAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFA 243 (615)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence 4445566799999999999998864 55678899999999999999999876655432210
Q ss_pred ----------CCC----HHHHHHHHHH-----------------------HHcCc------chHHHHHHHHHHHHHhhcC
Q 010807 177 ----------RPD----PSVYNALITA-----------------------HLHTR------DKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 177 ----------~p~----~~~~~~li~~-----------------------~~~~~------~~~~~~~~a~~~~~~~~~~ 213 (500)
.|. .......... +...+ ...+.+++|++.|++....
T Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 244 ESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 010 0000000000 00000 0235788999999998864
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 214 ERCKP-NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292 (500)
Q Consensus 214 ~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 292 (500)
....| ....|+.+...+...|++++|+..|+...+.... +...|..+...+...|++++|...|++..+.... +...
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~ 401 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDI 401 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 32233 4567888888999999999999999999876432 4668888889999999999999999999877433 6788
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
|..+...+...|++++|+..|++.++..+ .+...+..+..++.+.|++++|...++...... +.+...++.+...+..
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLD 479 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 88999999999999999999999988643 367778888999999999999999999988753 4457889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVS------TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 446 (500)
.|++++|++.|+...+.....+.. .++..+..+...|++++|..++++..... +.+...+..+...+.+.|++
T Consensus 480 ~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 480 QNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred ccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 999999999999988754321111 12222333445799999999999988764 33455788899999999999
Q ss_pred HHHHHHHHHHHHC
Q 010807 447 ELVQKLLKRMEQN 459 (500)
Q Consensus 447 ~~a~~~~~~m~~~ 459 (500)
++|.++|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-16 Score=162.29 Aligned_cols=290 Identities=10% Similarity=-0.026 Sum_probs=237.7
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~ 198 (500)
...|++++|++.|+.+.+.. +.+...+..+...+...|++++|...|++..+. .| +...+..+...+. ..|
T Consensus 87 l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~----~~g 158 (656)
T PRK15174 87 LASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV----LMD 158 (656)
T ss_pred hhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH----HCC
Confidence 34799999999999998874 566788999999999999999999999999875 34 4567777777877 778
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..+
T Consensus 159 ~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~ 235 (656)
T PRK15174 159 KELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTG 235 (656)
T ss_pred ChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999999886532 3334444443 347889999999999999887754445556666678899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 279 SRMKSNQCKPDIITFNLLIDSYGKRQAFDK----MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 279 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+++.+.... +...+..+...|...|++++ |+..|++..+..+ .+...+..+...+...|++++|...++...+.
T Consensus 236 ~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 236 ESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999987543 67788889999999999986 8999999988643 37789999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
. +.+...+..+..++...|++++|...|+.+.+.+.. +...+..+..++...|++++|...|++..+.
T Consensus 314 ~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 314 H-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 345667888899999999999999999999986532 2344555677899999999999999998875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=155.98 Aligned_cols=350 Identities=14% Similarity=0.129 Sum_probs=238.4
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH-- 192 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 192 (500)
+-..+...|++++|+..|+.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.....+-+.-+.+
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhh
Confidence 5556667799999999999998864 446788999999999999999999998888764 4654433332222221
Q ss_pred --Cc---------------------------chHHHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 010807 193 --TR---------------------------DKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNAL 242 (500)
Q Consensus 193 --~~---------------------------~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~ 242 (500)
.. ...|+.-.|++.|++.... .|+ ...|-.|.+.|...+.+++|+..
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 00 0455666666666666543 333 44566666677677777777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 010807 243 FKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322 (500)
Q Consensus 243 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 322 (500)
|......... ....+..+...|...|.+|.|+..+++..+.... -...|+.|..++-..|+..+|++.|.+.+....
T Consensus 275 Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p- 351 (966)
T KOG4626|consen 275 YLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP- 351 (966)
T ss_pred HHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-
Confidence 6665543222 3455666666677777777777777777765322 345677777777777888888888877776422
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 010807 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMK-VSTLNA 400 (500)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ 400 (500)
.-....+.|...|...|.+++|..+|....+. .|. ....+.|...|-+.|++++|+..|++.... +|+ ...|+.
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~N 427 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSN 427 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHh
Confidence 24566777777788888888888887777763 344 456777888888888888888888877764 333 567788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK-RFFLEALETFSSS 478 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 478 (500)
+...|-..|+.+.|++.+.+.+.. .|. ...++.|...|...|+..+|+.-++... .++||. ..|..++.+.--.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHHHH
Confidence 888888888888888888877765 343 5677888888888888888888888776 456665 3355555554444
Q ss_pred CCCC
Q 010807 479 LAGS 482 (500)
Q Consensus 479 g~~~ 482 (500)
..|.
T Consensus 504 cdw~ 507 (966)
T KOG4626|consen 504 CDWT 507 (966)
T ss_pred hccc
Confidence 4443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.7e-16 Score=169.07 Aligned_cols=378 Identities=11% Similarity=0.041 Sum_probs=237.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchH-HHHHHHhhhccCcchHHHHHH--------------------------------HH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPL-VRTLNKYVKVVRSEHCFLLFE--------------------------------EL 119 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~--------------------------------~l 119 (500)
.+...+|...++..++..|+.... ..+-..+.+.++.+.+...++ .+
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 466778888888888776654333 222233444444444433322 23
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcC-----
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHT----- 193 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~----- 193 (500)
.+.|++++|++.|+.+.+.. +.+...+..+..++...|++++|++.|++..+. .|+ ...+..+...+...
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHHHH
Confidence 35678889999999998874 556778888999999999999999999999875 343 33444444333210
Q ss_pred ---------------------------------cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 010807 194 ---------------------------------RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVN 240 (500)
Q Consensus 194 ---------------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 240 (500)
....|++++|++.|++..+.. +.+...+..+...|.+.|++++|.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 002234445555555544321 223444444555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHhccCCHHHHHH
Q 010807 241 ALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII---------TFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 241 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---------~~~~li~~~~~~~~~~~a~~ 311 (500)
..++++.+.... +...+..+...+...++.++|+..++.+......++.. .+..+...+...|++++|++
T Consensus 516 ~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 555555443221 22222233333444555555555554443221111111 11223445566677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 391 (500)
+++. .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..++..|...|++++|++.++.+.+...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 6652 33456677778888899999999999999988864 44678888899999999999999999998876532
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV--TP---DSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NGIVPN 464 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~ 464 (500)
.+...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|...|++... .|+.|+
T Consensus 669 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 669 -DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred -CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 3566777788888899999999999999876431 12 234566667788899999999999988864 355433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-15 Score=164.73 Aligned_cols=328 Identities=10% Similarity=0.066 Sum_probs=241.0
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHH-----------
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNAL----------- 186 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l----------- 186 (500)
+...|++++|+..|+...+.. +.+...+..+..++.+.|++++|+..|++..+..... ....|..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 445799999999999998864 5578899999999999999999999999998753221 11222222
Q ss_pred -HHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----
Q 010807 187 -ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV---- 261 (500)
Q Consensus 187 -i~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l---- 261 (500)
...+. ..|++++|+..|+++.... +.+...+..+...+...|++++|++.|+++.+.... +...+..+
T Consensus 357 ~g~~~~----~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~ 429 (1157)
T PRK11447 357 QGDAAL----KANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLY 429 (1157)
T ss_pred HHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 12333 6678999999999998743 556778888999999999999999999999875432 23333222
Q ss_pred --------------------------------------HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 262 --------------------------------------MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR 303 (500)
Q Consensus 262 --------------------------------------l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 303 (500)
...+...|++++|++.|++..+.... +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 23345678888888888888876433 566777888888999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----------------------------
Q 010807 304 QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM----------------------------- 354 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------------------------- 354 (500)
|++++|+..++++.+..+. +...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999988765332 3333333333333444444444443322100
Q ss_pred ----------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 355 ----------KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 355 ----------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+.+...+..+...+.+.|++++|++.|+++.+..+ .+...+..++..|...|++++|++.++...+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 1234455667788889999999999999999998753 46889999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 425 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 425 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
. +.+..++..+..++...|++++|.++++++...
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 2 234566777888899999999999999998865
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.8e-16 Score=156.74 Aligned_cols=353 Identities=10% Similarity=-0.044 Sum_probs=266.7
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcc
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRD 195 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 195 (500)
..+.+.|++++|+..|+...+. .|+...|..+..+|.+.|++++|++.++..++. .| +...|..+-.++.
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~---- 205 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD---- 205 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH----
Confidence 3455679999999999998874 567888999999999999999999999999886 34 4567777777887
Q ss_pred hHHHHHHHHHHHHHhhcCCCCC-------------------------------CCHHHHHHH------------------
Q 010807 196 KAKALAKALGYFQKMKGMERCK-------------------------------PNIVTYNIL------------------ 226 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~-------------------------------~~~~~~~~l------------------ 226 (500)
..|++++|+..|.......+.. |........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 6677888876665443211110 000000000
Q ss_pred ---------HHHH------HHcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC
Q 010807 227 ---------LRAC------AQARNVDQVNALFKELHESI-LAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD 289 (500)
Q Consensus 227 ---------l~~~------~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 289 (500)
+..+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..+++..+.... +
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence 0000 12357889999999998765 233 4566888888899999999999999999886432 4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 290 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM 369 (500)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 369 (500)
...|..+...+...|++++|+..|++.++... .+..+|..+...+...|++++|...|+...+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 66888889999999999999999999988643 367889999999999999999999999999864 3457778889999
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHHc
Q 010807 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-----DSS-TYKLLYKAYTKA 443 (500)
Q Consensus 370 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~ 443 (500)
+.+.|++++|+..|+...+.. +-+...|+.+..++...|++++|+..|++.....-.. +.. .+...+..+...
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999998864 3468899999999999999999999999988753211 111 122222233447
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCCCCC
Q 010807 444 NMKELVQKLLKRMEQNGIVPNK-RFFLEALETFSSSLAGSQS 484 (500)
Q Consensus 444 g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~ 484 (500)
|++++|..++++..+.. |+. ..+..+...+...|+.+..
T Consensus 522 ~~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eA 561 (615)
T TIGR00990 522 QDFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEA 561 (615)
T ss_pred hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHH
Confidence 99999999999988654 444 4577778888887776544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=155.97 Aligned_cols=360 Identities=14% Similarity=0.121 Sum_probs=284.0
Q ss_pred cCCCCccchhHHHHHHHHHHhcCCC-chHHHHHHHhhhccCcchHHHHHHH------------------HcccCCHHHHH
Q 010807 69 KRGRKSEELESKELVRVLMRSFSDK-EPLVRTLNKYVKVVRSEHCFLLFEE------------------LGKSDKWLQCL 129 (500)
Q Consensus 69 ~~~~~~~~~~a~~l~~~l~~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~------------------l~~~~~~~~A~ 129 (500)
..+.+|...+|..+++..++..++- +....+-..+...++.+.+...+.. +...|+..+|.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhH
Confidence 3345677778888888887766433 3344445555555655554432211 22347788888
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchHHHHHHHHHHHH
Q 010807 130 EVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALAKALGYFQ 208 (500)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 208 (500)
..|-+..+.. +.=+..|+.|...+...|+...|+..|++..+. .|+ ...|-.|-..|. ..+.+++|+..|.
T Consensus 205 ~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~k----e~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 205 ACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYK----EARIFDRAVSCYL 276 (966)
T ss_pred HHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHH----HHhcchHHHHHHH
Confidence 8887776643 223567999999999999999999999999874 454 356777777777 7888999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC
Q 010807 209 KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP 288 (500)
Q Consensus 209 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 288 (500)
+..... +-..+.+..|.-.|...|..|.|+..|++.++..+. =...|+.|..++-..|+..+|.+.+.+.......
T Consensus 277 rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~- 352 (966)
T KOG4626|consen 277 RALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN- 352 (966)
T ss_pred HHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-
Confidence 988642 445778899999999999999999999999876433 3578999999999999999999999999876433
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECI 366 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 366 (500)
-....+.|...|...|.+++|..+|....+- .|. ...++.|...|.+.|++++|...+++.+. +.|+ ...|+.+
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 5677899999999999999999999998874 343 56799999999999999999999999987 4676 6789999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANM 445 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 445 (500)
...|-..|+++.|...+.+.+..++. -...++.|...|-..|+..+|+.-|++..+. +|| +..|..++.+.----+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999999987643 2678999999999999999999999998875 666 4567677665543333
Q ss_pred HH
Q 010807 446 KE 447 (500)
Q Consensus 446 ~~ 447 (500)
|.
T Consensus 506 w~ 507 (966)
T KOG4626|consen 506 WT 507 (966)
T ss_pred cc
Confidence 33
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-14 Score=145.32 Aligned_cols=206 Identities=11% Similarity=0.029 Sum_probs=155.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhc
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---TLPTFNSMIINYGKA 338 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 338 (500)
..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+.+|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 3456778999999999999887532 332 22235678899999999999999987653321 134566677788899
Q ss_pred CCHhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKY-----------TPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~-----------~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999887531 123 2345667778889999999999999998865 4468899999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
+...|++++|++.+++..... +-+...+...+..+...|++++|..+++++.+. .|+......+=+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~ 468 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLAR 468 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 999999999999999988864 334667777777889999999999999999974 455444433333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-14 Score=145.76 Aligned_cols=387 Identities=10% Similarity=0.011 Sum_probs=270.8
Q ss_pred HHHHhcCCCchHHHHHHHhhhccCcch--HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHH
Q 010807 85 VLMRSFSDKEPLVRTLNKYVKVVRSEH--CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTR 162 (500)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 162 (500)
.|.....+.+....+...+........ ...+...+.+.|++++|+++|+...+.. +.+...+..++..+...|+.+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 333334555555555555543222222 3456667788899999999999988863 556777888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 010807 163 LAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNAL 242 (500)
Q Consensus 163 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 242 (500)
+|+..+++..+. .|+...+..+..++. ..|+.++|+..++++.+.. +.+...+..+..++...+..+.|++.
T Consensus 101 eA~~~l~~~l~~--~P~~~~~~~la~~l~----~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 101 EALVKAKQLVSG--APDKANLLALAYVYK----RAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 999999999876 343322666666666 6778999999999998642 55666777788888889999999998
Q ss_pred HHHHHhCCCCCCH------HHHHHHHHHHh-----hcCCH---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHhc
Q 010807 243 FKELHESILAPDI------YTYNGVMDAYG-----KNGMI---KEMESVLSRMKSN-QCKPDII-TFN----LLIDSYGK 302 (500)
Q Consensus 243 ~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~~ 302 (500)
++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++..
T Consensus 173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 876654 2221 11222222222 22234 7788888888854 2223221 111 11334567
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~ 378 (500)
.|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999887543 332 22225778999999999999999987653111 13456677778899999999
Q ss_pred HHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010807 379 AREIFDELSKLGK-----------DMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 379 A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 444 (500)
|..+++.+.+... .|+ ...+..+...+...|++++|+++++++.... +-+...+..+...+...|
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g 407 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG 407 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 9999999987532 123 2355677888999999999999999998764 446788899999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCCCCCccch
Q 010807 445 MKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 445 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
+.++|++.+++..+.. |+ ...+......+...+++.......
T Consensus 408 ~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 408 WPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999988654 55 455555555666666655444333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-14 Score=128.28 Aligned_cols=307 Identities=14% Similarity=0.162 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+-+..+|..+|.++++....+.|.++|.+-.+...+.+..+||.+|.+-. +....+++.+|.. ..+.||..
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------~~~~K~Lv~EMis-qkm~Pnl~ 274 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------YSVGKKLVAEMIS-QKMTPNLF 274 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------hhccHHHHHHHHH-hhcCCchH
Confidence 33567899999999999999999999999998888999999999998765 4445788889987 57899999
Q ss_pred HHHHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH-HHHHHHHHHh----CCCCC----
Q 010807 222 TYNILLRACAQARNVDQ----VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE-MESVLSRMKS----NQCKP---- 288 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~----~~~~~---- 288 (500)
|+|+++.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998765 56788999999999999999999999999888755 4455555443 22322
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK----EKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFI 361 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 361 (500)
|...|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.-...|+.|.-.-+-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 45567778888888888888888776554221 2222 2346667777788888888888888888777778888
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-Ch--h------h-----HHHHH-------HH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LP--T------E-----ADLLF-------EN 420 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--~------~-----A~~~~-------~~ 420 (500)
+...++++....|.++-.-++|.+++..|...+...-.-++..+++.. +. . . |..++ .+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R 514 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIR 514 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 888888888888888888888888887776555555555555555443 11 0 0 01111 11
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 421 SHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 421 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|.+. .......+.++..+.+.|..++|.+++....+.
T Consensus 515 ~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 515 QRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 2222 233445555566666777777777777666544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-13 Score=138.35 Aligned_cols=377 Identities=12% Similarity=0.095 Sum_probs=273.9
Q ss_pred CCCccchhHHHHHHHHHHhcCCCc-hHHHHHHHhhhccCcchHHHHHH------------------HHcccCCHHHHHHH
Q 010807 71 GRKSEELESKELVRVLMRSFSDKE-PLVRTLNKYVKVVRSEHCFLLFE------------------ELGKSDKWLQCLEV 131 (500)
Q Consensus 71 ~~~~~~~~a~~l~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~l~~------------------~l~~~~~~~~A~~~ 131 (500)
-+.|...+|...+..+++..|... .+.+.+..+...++.+.+...++ .+...|++++|+++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 346777899999999988776653 33344555555555555544333 33445899999999
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhh
Q 010807 132 FRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMK 211 (500)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~ 211 (500)
|+.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..+ ++... ..++..+|++.++++.
T Consensus 125 y~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~l--ayL~~--~~~~~~~AL~~~ekll 196 (822)
T PRK14574 125 WQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTL--SYLNR--ATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHH--HHHHH--hcchHHHHHHHHHHHH
Confidence 99999875 556777888899999999999999999999875 5666666333 44422 2345555999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------------------------
Q 010807 212 GMERCKPNIVTYNILLRACAQARNVDQVNALFK----------------------------------------------- 244 (500)
Q Consensus 212 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~----------------------------------------------- 244 (500)
+.. +.+...+..+..+..+.|-...|.++..
T Consensus 197 ~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 642 4456666777777776666555544433
Q ss_pred -HHHhC-CCCCCH-H----HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 245 -ELHES-ILAPDI-Y----TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLM 317 (500)
Q Consensus 245 -~m~~~-g~~p~~-~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 317 (500)
.+... +..|.. . ...-.+-++...|++.++++.|+.+...+.+....+-..+.++|...+++++|+.+|+++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 22211 111211 1 1123345677888999999999999988876566678889999999999999999999987
Q ss_pred hCCC-----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-----------CC--C-HHHHHHHHHHHhccCCHHH
Q 010807 318 HSKE-----KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-----------TP--S-FITYECIITMYGYCDNVSR 378 (500)
Q Consensus 318 ~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~~--~-~~~~~~li~~~~~~~~~~~ 378 (500)
.... .++......|.-+|...+++++|..+++.+.+... .| | ...+..++..+.-.|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6431 23444567888999999999999999999987321 12 2 2234556777888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
|++.++++.... +-|......+...+...|.+.+|...++...... +-+..+....+.++...|++++|..+.+...+
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999999998875 4589999999999999999999999997766652 33566777888888999999999999888765
Q ss_pred C
Q 010807 459 N 459 (500)
Q Consensus 459 ~ 459 (500)
.
T Consensus 513 ~ 513 (822)
T PRK14574 513 R 513 (822)
T ss_pred h
Confidence 4
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-14 Score=127.71 Aligned_cols=259 Identities=16% Similarity=0.202 Sum_probs=209.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+.+..+|.+||.+.|+--..+.|.++|++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 44678999999999999999999999999988888889999999997654322 26888999999999999999999
Q ss_pred HHHHhccCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHh----CCCC---C-CHHHH
Q 010807 297 IDSYGKRQAFDK----MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK-AEYVFQKMTA----MKYT---P-SFITY 363 (500)
Q Consensus 297 i~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~---~-~~~~~ 363 (500)
+.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.+++. ..++ | |...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998864 56778899999999999999999999999888755 4444444433 2222 2 45667
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLG----KDMK---VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 436 (500)
..-+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|+-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888889999999998877665411 2232 233566777888888899999999999988888999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
+++....|.++-.-+++.+|...|..-+...-..++.-+++..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999987777777777777777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-12 Score=132.07 Aligned_cols=325 Identities=11% Similarity=0.017 Sum_probs=236.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHcCcc-----
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS--GCRPDPSVYNALITAHLHTRD----- 195 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~----- 195 (500)
+...++.+.++.|.+.. +-+......+.-...+.|+.++|.++|+..... .-.++....+-++..|.....
T Consensus 356 ~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 55566666666666652 346677777777888899999999999988652 122344444456666654321
Q ss_pred ----------------hHHHHHHHHHHHHHhhcCCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 196 ----------------KAKALAKALGYFQKMKGMER-CKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 196 ----------------~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
-.|...++....+......+ .++ +...|..+..++.. ++.++|+..+.+..... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 02333222222222222111 144 67788888877776 78888999888776653 5554
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
....+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...+++..+..+. +...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHH
Confidence 4444455557899999999999998655 344455667777888999999999999999876422 3344444444555
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
..|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++..+..+ -+...++.+..++...|++++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999885 46788899999999999999999999999998763 367888999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 417 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 417 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.+++..+.. +-+...+..+..++...|++++|...+++..+.
T Consensus 665 ~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 665 MLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999998864 346778899999999999999999999999865
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-11 Score=126.90 Aligned_cols=384 Identities=10% Similarity=0.044 Sum_probs=271.0
Q ss_pred CCCchHHHHHHHhhhccCcc--hHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010807 91 SDKEPLVRTLNKYVKVVRSE--HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLF 168 (500)
Q Consensus 91 ~~~~~~~~~l~~~~~~~~~~--~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 168 (500)
++..+....+....+..... ....++..+...|+.++|+..+++.... .+........+...+...|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555666666555544333 2446667777779999999999998832 2333444444567899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 010807 169 SEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHE 248 (500)
Q Consensus 169 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 248 (500)
+++.+... -+...+..++..+. ..++.++|++.++++... .|+...+..++..+...++..+|++.++++.+
T Consensus 126 ~kaL~~dP-~n~~~l~gLa~~y~----~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 126 QSSLKKDP-TNPDLISGMIMTQA----DAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHhhCC-CCHHHHHHHHHHHh----hcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99998632 23455556666666 678899999999999864 56666665555555556677679999999998
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHH------------------------------------------------HHHHH
Q 010807 249 SILAPDIYTYNGVMDAYGKNGMIKEME------------------------------------------------SVLSR 280 (500)
Q Consensus 249 ~g~~p~~~~~~~ll~~~~~~g~~~~a~------------------------------------------------~~~~~ 280 (500)
.... +...+..++..+.+.|-...|+ .-++.
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 7543 5555555555555554333333 33333
Q ss_pred HHhC-CCCCCH-H----HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 281 MKSN-QCKPDI-I----TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 281 m~~~-~~~~~~-~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+... +-.|.. . ...-.+-++...+++.++++.|+.+...+.+....+-..+.++|...+++++|..+++.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 3321 111221 1 122344567788999999999999998887666778889999999999999999999998764
Q ss_pred C-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------CC--CH-HHHHHHHHHHHhcCChhhHH
Q 010807 355 K-----YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----------DM--KV-STLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 355 ~-----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----------~~--~~-~~~~~li~~~~~~g~~~~A~ 415 (500)
. ..++......|.-+|...+++++|..+++.+.+..+ .| |- ..+..++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 123444467899999999999999999999987322 12 22 23445677788999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCCCCCccch
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
+.++++.... +-|......+...+...|...+|.+.++..... .|+ ..+.......+-..+.+.......
T Consensus 437 ~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 437 KKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999998764 558889999999999999999999999766644 454 344556666666666665554333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-12 Score=135.73 Aligned_cols=341 Identities=10% Similarity=-0.020 Sum_probs=239.3
Q ss_pred CccchhHHHHHHHHHHhcCC---CchHH-HHHHHhhhccCcchHHHHHHH---Hcc------cCCHHHHHHHHHHHHHcc
Q 010807 73 KSEELESKELVRVLMRSFSD---KEPLV-RTLNKYVKVVRSEHCFLLFEE---LGK------SDKWLQCLEVFRWMQKQR 139 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~---~~~~~-~~l~~~~~~~~~~~~~~l~~~---l~~------~~~~~~A~~~~~~~~~~~ 139 (500)
.|+..+|..+++......++ +.++. ++...+.+.....+...++.. +.. .|++.++....+.....-
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 45566777777766653222 12344 556666666554333333222 111 244444444444444332
Q ss_pred CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC
Q 010807 140 WY-IA--DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC 216 (500)
Q Consensus 140 ~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (500)
.. ++ +...|..+..++.. ++.++|+..|.+.... .|+......+...+. ..|++++|+..|+++...
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----~~Gr~eeAi~~~rka~~~--- 538 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----QVEDYATALAAWQKISLH--- 538 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----HCCCHHHHHHHHHHHhcc---
Confidence 22 34 67778888888877 8888899988887765 466544333333334 677899999999988642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+|+...+..+...+.+.|+.++|...+++..+.... +...+..+.....+.|++++|...+++..+. .|+...+..+
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L 615 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR 615 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 455556777788889999999999999998876532 3333334444555669999999999999876 4567888899
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
..++.+.|++++|+..|++.....+. +...++.+..++...|++++|...++...+.. +-+...+..+..++...|++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999999886433 67788888889999999999999999988864 34577888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
++|+..+++..+.... +..+.........+..+++.|.+-+.+.... .|+..
T Consensus 694 ~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~--~~~~~ 745 (987)
T PRK09782 694 AATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWTF--SFDSS 745 (987)
T ss_pred HHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhhc--Cccch
Confidence 9999999999886532 3455556667777777788888877776554 44444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-13 Score=126.82 Aligned_cols=283 Identities=13% Similarity=0.063 Sum_probs=198.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHHcC
Q 010807 158 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTRDKAKALAKALGYFQKMKGMERCKPNIVTYN--ILLRACAQAR 234 (500)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g 234 (500)
.|++++|++.+....+.. ++...+ .++.+.. . ..|+++.|.++|.++.+. .|+...+. .....+...|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~-~llaA~aA~---~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVN-YLLAAEAAQ---QRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHH-HHHHHHHHH---HCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCC
Confidence 578888887777665532 122222 2222211 1 667788888888887652 44543222 3356777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFD 307 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~ 307 (500)
+++.|...++.+.+..+. +......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+
T Consensus 168 ~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~ 246 (398)
T PRK10747 168 ENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSE 246 (398)
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 888888888888776644 6677777788888888888888888888877554222 12333343334445566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
...++++.+.+. .+.++.....+...+...|+.++|..++++..+. .++.... ++.+....++.+++.+..+.+.
T Consensus 247 ~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 247 GLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHH
Confidence 666666665443 3447778888888999999999999999888874 4555322 2334445688999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 388 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+.. +-|+..+..+...+.+.|++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 322 k~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 322 KQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 765 346778888899999999999999999998876 68888888999999999999999998887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-12 Score=121.55 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=110.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hcc
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY---GKR 303 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~---~~~ 303 (500)
...+...|+++.|...++.+.+..+. +...+..+...+.+.|++++|.+.+..+.+.+..+.......-..++ ...
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555444322 33444444555555555555555555555443321111101111111 111
Q ss_pred CCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhccCCHH
Q 010807 304 QAFDKMEQVFKSLMHSKE---KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT---YECIITMYGYCDNVS 377 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~~~~~ 377 (500)
+..++..+.+..+.+..+ +.+...+..+...+...|+.++|..++++..+.. ||... ...........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChH
Confidence 222222223333332211 1255555566666666666666666666665542 22221 111111222345566
Q ss_pred HHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 378 RAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
.+.+.++...+.. +-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 317 ~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 317 KLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666543 2234 555666677777777777777777433333356666666777777777777777777766
Q ss_pred HH
Q 010807 456 ME 457 (500)
Q Consensus 456 m~ 457 (500)
-.
T Consensus 396 ~l 397 (409)
T TIGR00540 396 SL 397 (409)
T ss_pred HH
Confidence 53
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-11 Score=119.34 Aligned_cols=283 Identities=8% Similarity=0.032 Sum_probs=218.5
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHcCcchHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGI-YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN--ALITAHLHTRDKAK 198 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~ 198 (500)
.|+|+.|.+.+....+.. ++... |-.......+.|+++.|...|.++.+. .|+...+. .....+. ..|
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l----~~g 167 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL----ARN 167 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH----HCC
Confidence 499999998888766642 12233 433445558999999999999999875 56654443 2234455 678
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCCH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI-------YTYNGVMDAYGKNGMI 271 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~ 271 (500)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.
T Consensus 168 ~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 168 ENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 8999999999998643 667888999999999999999999999999998765332 2333444444455566
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
+...++++.+... .+.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++....+..
T Consensus 246 ~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 246 EGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 6777777776543 2347778889999999999999999999999874 3444222 233444569999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 352 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.+.. +-|...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 321 lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8764 456777889999999999999999999999985 48899999999999999999999999998654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-12 Score=123.74 Aligned_cols=291 Identities=12% Similarity=0.036 Sum_probs=212.2
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCcchHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS--VYNALITAHLHTRDKAK 198 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~ 198 (500)
..|+|+.|.+.+....+.. +.....+-.........|+.+.|.+.|.+..+. .|+.. ........+. ..|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l----~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILL----AQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHH----HCC
Confidence 3599999999998887753 223444555667888999999999999998765 34443 3333355555 677
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hhcCCHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYN-GVMDAY---GKNGMIKEM 274 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~---~~~g~~~~a 274 (500)
+++.|...++.+.+.. +.+...+..+...+...|++++|.+++..+.+.++. +...+. .-..++ ...+..++.
T Consensus 168 ~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999998643 557788999999999999999999999999998765 333332 222222 333344444
Q ss_pred HHHHHHHHhCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHH
Q 010807 275 ESVLSRMKSNQC---KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF-NSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 275 ~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~ 350 (500)
.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+...++.
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 456666555422 137888889999999999999999999999886443222111 1222223345778888888888
Q ss_pred HHhCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 351 MTAMKYTPSF--ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 351 m~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
..+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 325 ~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 325 QAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77652 3334 566789999999999999999999655544568888899999999999999999999998643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-15 Score=134.52 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..++++.|+..++++...+ +-+...+..++.. ...+++++|.+++....+.. ++...+..++..+.+.++++++.
T Consensus 56 ~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred ccccccccccccccccccc--ccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHH
Confidence 3444555555555554321 1233334444444 44555555555554443321 23334444445555555555555
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 276 SVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 276 ~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
++++.+.... ...+...|..+...+.+.|+.++|++.+++.++..+. |......++..+...|+.+++..+++...+.
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKA 209 (280)
T ss_dssp HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 5555544321 2234444555555555555555555555555553221 3444555555555555555555555554443
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
. +.|...+..+..+|...|+.++|..+|++..+.. +.|+.+...+..++...|+.++|.++..+.
T Consensus 210 ~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 210 A-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp --HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred C-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 2 2333344555555555555555555555555532 224555555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.7e-15 Score=134.75 Aligned_cols=256 Identities=15% Similarity=0.101 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..|++++|++++++.......+.+...|..+...+...++++.|.+.++.+...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 778899999999654421111345556666777788899999999999999887655 56667777777 7999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+++.+..+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|...+++..+.
T Consensus 98 ~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9998876653 466677888889999999999999999987543 3457788889999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
. +-|......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|+.+|++..... +.|.....
T Consensus 176 ~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 D-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 4 3357788899999999999999999998888764 4566788999999999999999999999988764 45888889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 435 LLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 435 ~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.+..++...|+.++|.++.++..+
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHT-----------------
T ss_pred cccccccccccccccccccccccc
Confidence 999999999999999998876643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-12 Score=122.35 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=186.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHcCCHHH
Q 010807 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQ 238 (500)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~ 238 (500)
+..+|...|...... +.-+..+...+-.+|. ..+++++|..+|+.+...... ..+..+|.+.+.-+-+.-.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayF----El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~--- 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYF----ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA--- 405 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---
Confidence 356777777775543 2223344455666666 677777777777777654322 2345566666644322211
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 239 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
---+-+++.+.. +-...+|..+.++|.-+++.+.|++.|++..+.+.. ...+|+.+.+-+.....+|.|...|+..+.
T Consensus 406 Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 406 LSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 111222333322 225677888888888888888888888877765322 567777777777777888888888877754
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010807 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 398 (500)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 398 (500)
.... +-..|.-+...|.+.++++.|+-.|+...+.+ +-+.+....+...+.+.|+.|+|+++++++...+.+ |+..-
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 3111 23344455667778888888888888877754 345666677777778888888888888887776543 34433
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
-..+..+...+++++|+..++++++. .|+ ...|..+.+.|.+.|+.+.|+.-|--|.+..-+++.
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 34555666778888888888887765 444 456667777888888888888777777665444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-11 Score=116.72 Aligned_cols=350 Identities=11% Similarity=0.054 Sum_probs=262.4
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.|++++|.+++.++.++. +.+...|.+|..+|-..|+.+++...+-..-.. .+-|...|..+-.... +.|.++
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~----~~~~i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSE----QLGNIN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHH----hcccHH
Confidence 499999999999999985 667788999999999999999998877655433 2346678887777766 888999
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHhhcCCHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG----VMDAYGKNGMIKEMESV 277 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~a~~~ 277 (500)
.|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.....+.|..-+.. .+..+...++-+.|.+.
T Consensus 225 qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 225 QARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998753 56666666778889999999999999999988755334433333 34556667777889998
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC---------------------------CCCHHHHH
Q 010807 278 LSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---------------------------KPTLPTFN 329 (500)
Q Consensus 278 ~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~ 329 (500)
++..... +-..+...++.++..|.+...++.|......+..... .++..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8887763 2223556778889999999999999988887766211 122222 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
-+..++......+....+.....+..+.| +...|.-+..+|...|++.+|+.+|..+.....--+..+|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334555566666666777777766443 4678899999999999999999999999986555568899999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhcCC
Q 010807 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME--------QNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g 479 (500)
.|.+++|++.|+..+... +-+...-..|...+-+.|+.++|.+.+..|. ..+..|+..........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999998763 3345566667778889999999999999854 2345566555544455555555
Q ss_pred CCC
Q 010807 480 AGS 482 (500)
Q Consensus 480 ~~~ 482 (500)
+.+
T Consensus 541 k~E 543 (895)
T KOG2076|consen 541 KRE 543 (895)
T ss_pred hHH
Confidence 443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-11 Score=106.61 Aligned_cols=289 Identities=11% Similarity=0.042 Sum_probs=174.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCC
Q 010807 159 GQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARN 235 (500)
Q Consensus 159 g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~ 235 (500)
.+.++|.++|-+|.+. .|..+ +.-+|-+.|- +.|.+++|+.+-+.+....+.+-+ ......|..-|...|-
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfR----sRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFR----SRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 4556666666666552 22222 2222223332 555666666666666542211111 1233445566777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI----ITFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~ 311 (500)
+|.|+.+|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 77777777777664322 3456667777777777777777777777666544332 234455555556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 391 (500)
++.+..+...+ .+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77777665433 34444456667777788888888887777765444456677777788888888888877777776543
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHC
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK---ANMKELVQKLLKRMEQN 459 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 459 (500)
....-..+-..-....-.+.|..++.+-+.. +|+...+..|+..... .|...+-+..+++|...
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3333344444444445556666666555554 6788888888776543 44566677777777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-11 Score=111.45 Aligned_cols=310 Identities=12% Similarity=0.084 Sum_probs=207.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHH
Q 010807 154 VMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCK-PNIVTYNILLRACAQ 232 (500)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 232 (500)
++-.....+++..-.+.....|+......-+....+.. ...++++|+.+|+++...+... .|..+|..++-+ +
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y----~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASY----NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHh----hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 44445566666666666666666544443333333333 5667888888888877643222 245566666533 3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
..+-.- ..+.+-.-.--+--..|...+.+-|+-.++.++|...|++..+.+.. ....|+.+.+-|....+...|++-
T Consensus 310 ~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 322111 11111110001123456667777788888888999999888877544 567788888888888888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 010807 313 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 392 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 392 (500)
++..++-.+ .|-..|..|.++|.-.+.+.-|+-.|++..+-. +-|...|.+|..+|.+.+++++|++.|......| .
T Consensus 387 YRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 988887643 378888889999998888888888888888753 4568888899999999999999999998888876 2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh----CCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTEADLLFENSHN----MGV-TP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKR 466 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 466 (500)
.+...+..|...|-+.++.++|...|++-++ .|. .| ......-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3557888888888888888888888877554 232 22 1222233555677888888888766555433 45555
Q ss_pred HHHHHHHHHhc
Q 010807 467 FFLEALETFSS 477 (500)
Q Consensus 467 ~~~~ll~~~~~ 477 (500)
--..+++.+.+
T Consensus 542 eak~LlReir~ 552 (559)
T KOG1155|consen 542 EAKALLREIRK 552 (559)
T ss_pred HHHHHHHHHHH
Confidence 55566665544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-11 Score=118.63 Aligned_cols=340 Identities=13% Similarity=0.058 Sum_probs=190.1
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIAD-TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITA 189 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~ 189 (500)
++.+-+.....|+++.|...|-...+.. ..+ +..+--+..++.+.|+.+.+...|+.+.+. .||.. +...|-..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhH
Confidence 3344455566789999999988877653 222 444666888999999999999999998875 45544 44444444
Q ss_pred HHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHH
Q 010807 190 HLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE----LHESILAPDIYTYNGVMDAY 265 (500)
Q Consensus 190 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~ 265 (500)
|+..+......++|..++.+..... +.|...|-.+...+....-+.. +.+|.. |...+-.+.....|.+...+
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 4433223445677777777776532 5566666666666655444333 555543 33445556777777777777
Q ss_pred hhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHhccCCHHHH---------------------------
Q 010807 266 GKNGMIKEMESVLSRMKSN---QCKPDI------ITFNLLIDSYGKRQAFDKM--------------------------- 309 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~~~~~~a--------------------------- 309 (500)
...|++++|...|+..... ...++. .+--.+....-..++++.|
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 7778777777777776544 111121 1111222222233333333
Q ss_pred -------HHHHHHHHhCCC-----------------------------------CCCHHHHHHHHHHHHh----------
Q 010807 310 -------EQVFKSLMHSKE-----------------------------------KPTLPTFNSMIINYGK---------- 337 (500)
Q Consensus 310 -------~~~~~~~~~~~~-----------------------------------~~~~~~~~~li~~~~~---------- 337 (500)
...++......- .+|..+.-.|.+.|..
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 333333322110 1122222222222221
Q ss_pred --cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 338 --ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 338 --~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
.+..++|+++|.+.+... +-|...-|-+.-+++..|++..|..+|.++.+... -...+|-.+.++|..+|+|..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 122345555555555543 33444555555666666666666666666666432 13455666666666666666666
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 416 LLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 416 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
++|+..... .-.-+......|.+++.+.|++.+|.+.+.......
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 666654332 333455566666666666666666666665555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8e-11 Score=105.50 Aligned_cols=292 Identities=13% Similarity=0.080 Sum_probs=214.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 010807 158 KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD 237 (500)
Q Consensus 158 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 237 (500)
.|++.+|+++..+-.+.+-.|- ..|..-..+.- ..|+.+.+-.++.+..+..+ .++...+-+........|+++
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~----qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQ----QRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHH----hcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCch
Confidence 5888888888888776653332 22222233333 67778888888888876322 456667777777888888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHH
Q 010807 238 QVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI-------ITFNLLIDSYGKRQAFDKME 310 (500)
Q Consensus 238 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~ 310 (500)
.|..-++++.+.+.. +.........+|.+.|++..+..++.+|.+.|.-.+. .+|..+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 888888888777655 6677778888888888888888888888888765443 35666666666666666656
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 311 QVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
..++..... .+.++..-..++.-+.+.|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-.+..++..+..
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 666665443 444666777788888999999999999999888776655 222334566778777777777776642
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
+-++..+.+|...|.+++.|.+|...|+...+. .|+..+|+.+..+|.+.|+.+.|.+..++..-.-.+|+
T Consensus 325 -~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 325 -PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred -CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 345688899999999999999999999977765 78999999999999999999999999888775444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-11 Score=106.00 Aligned_cols=285 Identities=13% Similarity=0.104 Sum_probs=216.2
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHH
Q 010807 182 VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTY 258 (500)
Q Consensus 182 ~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~ 258 (500)
.|-.=++.+. ....++|.+.|-+|.+.+ +.+..+--+|.+.|.+.|..|.|+++.+.+.+..--+. ....
T Consensus 38 ~Yv~GlNfLL-----s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl 110 (389)
T COG2956 38 DYVKGLNFLL-----SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL 110 (389)
T ss_pred HHHhHHHHHh-----hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3444455553 345789999999998632 55666777899999999999999999999987521111 2334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH
Q 010807 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIIN 334 (500)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~ 334 (500)
..|..-|...|-+|.|+.+|..+.+.+.. -......|+..|-...+|++|+++-+++...+..+.. ..|.-+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 55667788999999999999999886533 4556788999999999999999999999877655432 356667777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 010807 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 414 (500)
+....+.+.|..++.+..+.. +..+..--.+.+.+...|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777889999999999998865 3334455567788999999999999999999988777778899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
..++..+.+.. ++...-..+...-....-.+.|..++.+-.. -+|+..-|..++..-...+
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccc
Confidence 99999998863 4444444454443344445556655554443 3699999999988765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-10 Score=111.70 Aligned_cols=340 Identities=12% Similarity=0.055 Sum_probs=233.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHH-Hhhh------------------ccCcchHHHHHHHHcccCCHHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLN-KYVK------------------VVRSEHCFLLFEELGKSDKWLQCLEVFR 133 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~-~~~~------------------~~~~~~~~~l~~~l~~~~~~~~A~~~~~ 133 (500)
+|+..+|.+++.+++++.|........|. .|-. ..+.+.+..+-+...+.|.+.+|.-.|.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 47778999999999888755544433332 2333 3344455556666677788999999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
+..+.. +++...+---+..|-+.|+...|.+-|.++.......|..-...++...++..-..++-+.|++.++.....
T Consensus 232 rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 998874 677777777888999999999999999999887443344445555554443333566668899998888764
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---------------------------CCHHHHHHHHHHHh
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA---------------------------PDIYTYNGVMDAYG 266 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~---------------------------p~~~~~~~ll~~~~ 266 (500)
.+-..+...++.++..+.+...++.|......+.....+ ++... ..++-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence 444566778899999999999999999988887762222 22222 12333444
Q ss_pred hcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010807 267 KNGMIKEMESVLSRMKSNQ--CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 344 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (500)
+....+....+.....+.. +.-+...|.-+.++|...|++.+|+++|..+......-+...|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4555555555555555554 33356677888888888888888888888887765555677888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 345 EYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK--------LGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 345 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
.+.|+..+... +-+...-..|-..+.+.|+.++|.+.+..+.. .+..|+....-.....+.+.|+.++-+.
T Consensus 469 ~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 88888887753 23344555666777888888888888887542 2334444444445555666666655433
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-12 Score=120.18 Aligned_cols=283 Identities=13% Similarity=0.038 Sum_probs=164.8
Q ss_pred CHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
++++|+..|+++..+. ..+..+...+..+|...+++++|+++|+.+.+.. ..-+..+|.+.+-.+-+ ...---
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHH
Confidence 4566677776655442 3334556666677777777777777777766531 01245566666654431 111111
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 281 (500)
-|.++.+.. +-.+.+|-++.+.|.-.++.+.|++.|++....... ...+|+.+..-+.....+|.|...|...
T Consensus 409 Laq~Li~~~------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 409 LAQDLIDTD------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred HHHHHHhhC------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhh
Confidence 122222222 234566777777777777777777777766654222 5566666666666666677777777666
Q ss_pred HhCCCCCCHHHHH---HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 010807 282 KSNQCKPDIITFN---LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358 (500)
Q Consensus 282 ~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 358 (500)
... |...|+ -|...|.+.++++.|+-.|+...+-++. +.+....+...+.+.|+.++|++++++..... +.
T Consensus 482 l~~----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~k 555 (638)
T KOG1126|consen 482 LGV----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PK 555 (638)
T ss_pred hcC----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CC
Confidence 543 333333 3455667777777777777776664333 45555556666666777777777777766644 22
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
|...--..+..+...+++++|+..++++++.- +-+..+|-.+...|.+.|+.+.|+.-|--+.+..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 33333344555555677777777777776652 2345566666677777777777776666666543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-10 Score=102.57 Aligned_cols=307 Identities=17% Similarity=0.115 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------------------------cCcch
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-------------------------HTRDK 196 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-------------------------~~~~~ 196 (500)
..|...+-....++.+.|....|++.|......- +-.=..|..|...+. +....
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 3456666666667778889999998888766421 111111211111111 00002
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a 274 (500)
....++++.-.+.... .|.+-+...-+-...+.....|+++|+.+|+++.++.+- -|..+|+.++-.-....++
T Consensus 240 l~q~~e~~~k~e~l~~-~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL--- 315 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSS-VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL--- 315 (559)
T ss_pred HHHHHHHHHHHHHHHh-ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH---
Confidence 3344445544444443 333333333333444445566777777777777666321 1455666555332221111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.++..-...--+--+.|+..+.+.|.-.++.++|+..|++.++.+.. ....|+.+..-|....+...|.+-++...+.
T Consensus 316 -s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 316 -SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred -HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 11111111101113346667777788889999999999999987544 6788999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
. +.|-..|-.|.++|.-.+...-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|......| ..+...+.
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 5 6688999999999999999999999999999874 4589999999999999999999999999999877 44778999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 435 LLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 435 ~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.|.+.|-+.++.++|...|++..+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999988876
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.2e-11 Score=107.04 Aligned_cols=352 Identities=11% Similarity=0.072 Sum_probs=238.8
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CHHHHHHHH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP------------DPSVYNALI 187 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~~~li 187 (500)
.+.|++++|+..|+.+.+. .|+..+--.++-++.-.|+.++..+.|.+|......| +....+..|
T Consensus 287 iq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 4569999999999998875 4676655556666667899999999999998753333 333333322
Q ss_pred HH-HHcCc--chHHHHHHHHHHHHHhhcCCCCCCCHH-----HHH----------------HHHHHHHHcCCHHHHHHHH
Q 010807 188 TA-HLHTR--DKAKALAKALGYFQKMKGMERCKPNIV-----TYN----------------ILLRACAQARNVDQVNALF 243 (500)
Q Consensus 188 ~~-~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~----------------~ll~~~~~~g~~~~a~~~~ 243 (500)
.. ..+.- ....+.++++-.--++.. .-+.|+.. ... .-..-+.+.|+++.|++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 11 11000 011223333333333322 11223211 000 1123467889999999988
Q ss_pred HHHHhCCCCCCHHHHHHHH------------------------------------HHHhhcCCHHHHHHHHHHHHhCCCC
Q 010807 244 KELHESILAPDIYTYNGVM------------------------------------DAYGKNGMIKEMESVLSRMKSNQCK 287 (500)
Q Consensus 244 ~~m~~~g~~p~~~~~~~ll------------------------------------~~~~~~g~~~~a~~~~~~m~~~~~~ 287 (500)
+-+.+..-+.-...-+.|- +....+|++++|.+.+++.....-.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 8776543221111111110 1122368899999999998876333
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 288 PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367 (500)
Q Consensus 288 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 367 (500)
-....|| +.-.+-..|++++|++.|-++..- ...+..+...+...|....+...|++++.+.... ++.|+...+-|.
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLA 599 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHH
Confidence 2222233 233467789999999999887553 3347778888888999999999999998776553 456788999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMK 446 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 446 (500)
..|-+.|+-..|.+.+-+--.. ++-+..+...|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|++
T Consensus 600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence 9999999999999887655443 566888999999999999999999999998654 489999999988865 568999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 010807 447 ELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 447 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
+.|..+++.... .++-|..++..+++-++..|..+
T Consensus 677 qka~d~yk~~hr-kfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 677 QKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHH-hCccchHHHHHHHHHhccccchh
Confidence 999999988764 57788889999999888777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-10 Score=100.39 Aligned_cols=291 Identities=12% Similarity=0.077 Sum_probs=229.8
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.|+|.+|.+....-.+.+ ......|..-+.+.-..|+.+.|-.++.+.-+.--.++...+-+...... ..|+++
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----NRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH----hCCCch
Confidence 599999999998877765 33466778888889999999999999999988633556666666667777 677788
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCCHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDI-------YTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a 274 (500)
.|..-.+++.+.. +.+.........+|.+.|++.....++..|.+.|.--|. .+|..++.-....+..+.-
T Consensus 171 aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL 248 (400)
T COG3071 171 AARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL 248 (400)
T ss_pred hHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 8988888887643 667889999999999999999999999999999876554 4577777777776666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
...++....+ .+-++..-.+++.-+.+.|+.++|.++..+..+.+..++.. ..-.+.+-++.+.-.+..+.-.+.
T Consensus 249 ~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 249 KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh
Confidence 6677766544 33356666778888999999999999999998887766522 223455677777777777665553
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 428 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 428 (500)
. +-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+..+|.+.|+..+|.++.++....-..|
T Consensus 324 h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 324 H-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred C-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 2 334578899999999999999999999977775 5889999999999999999999999999876443333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-11 Score=108.43 Aligned_cols=361 Identities=16% Similarity=0.127 Sum_probs=217.0
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGI-YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
+...+|+..|+-+.+...+ |+... --.+.+.+.+..++.+|+++|+..+..-...+..+--.++.-..-..-+.|.++
T Consensus 215 dm~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~ 293 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD 293 (840)
T ss_pred HHHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch
Confidence 4456666666666665533 33322 223445566666777777777666554222222222222222111111666777
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------------CHHHHHHHH-------
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP------------DIYTYNGVM------- 262 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p------------~~~~~~~ll------- 262 (500)
.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|..|+.....| +....+..|
T Consensus 294 dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 294 DAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 777777776653 5666654445555555677777777777776433222 111111111
Q ss_pred --------------------------------------------------------HHHhhcCCHHHHHHHHHHHHhCCC
Q 010807 263 --------------------------------------------------------DAYGKNGMIKEMESVLSRMKSNQC 286 (500)
Q Consensus 263 --------------------------------------------------------~~~~~~g~~~~a~~~~~~m~~~~~ 286 (500)
.-+.+.|+++.|+++++-+.+..-
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 115677888888888777665432
Q ss_pred CCCHHHHHHHH--H----------------------------------HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 287 KPDIITFNLLI--D----------------------------------SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 330 (500)
Q Consensus 287 ~~~~~~~~~li--~----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (500)
+.-...-+.|- . ....+|++++|.+.|++.+.....-....| .
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf-n 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF-N 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH-H
Confidence 21111111110 0 001257778888888777654332222222 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
+.-.+...|+.++|++.|-.+... +.-+..+...+.+.|....+...|++++.+.... ++.|+.+..-|...|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 334456677888888877665442 2345666777778888888888888888776664 56678888999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cCCCCCCCccchh
Q 010807 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFS-SSLAGSQSGSAKT 489 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~~~~~~~ 489 (500)
-..|.+.+-+--.. ++-|..|...|..-|....-+++++.+|++.. -++|+..-|..++..|. ++|+.......-.
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88888877654433 45678888888888888888999999998765 68999999988776665 5666554444444
Q ss_pred hhhh
Q 010807 490 DLTR 493 (500)
Q Consensus 490 ~l~~ 493 (500)
++.|
T Consensus 685 ~~hr 688 (840)
T KOG2003|consen 685 DIHR 688 (840)
T ss_pred HHHH
Confidence 4433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-10 Score=115.29 Aligned_cols=271 Identities=8% Similarity=-0.052 Sum_probs=191.8
Q ss_pred CHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHh
Q 010807 179 DPSVYNALITAHLHT-RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ---------ARNVDQVNALFKELHE 248 (500)
Q Consensus 179 ~~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~~ 248 (500)
+...|...+.+..+. ....+.+++|+..|++..+.. +.+...|..+..++.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 445555555553211 114577899999999998643 3345566666555442 3458899999999988
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 249 SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF 328 (500)
Q Consensus 249 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (500)
.... +...+..+...+...|++++|...|++..+.+.. +...+..+..++...|++++|+..+++..+..+. +...+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7654 7778888888899999999999999999887533 5677888889999999999999999999886544 33333
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010807 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 408 (500)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (500)
..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence 44455566789999999999998765422245567778888899999999999999877653 22455566677777877
Q ss_pred CChhhHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 409 GLPTEADLLFENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 409 g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
| ++|...++.+.+.. -.+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 47777777766531 12222222 44455667777777766 7777653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=119.72 Aligned_cols=270 Identities=14% Similarity=0.166 Sum_probs=127.6
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM 213 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~ 213 (500)
.+...| +.|+..+|..+|.-|+..|+.+.|- +|.-|.-.....+...++.++.+.. ..++.+.+.
T Consensus 15 ~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----~And~Enpk--------- 79 (1088)
T KOG4318|consen 15 LHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----EANDAENPK--------- 79 (1088)
T ss_pred HHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----ccccccCCC---------
Confidence 333333 5666666666666666666666666 6666655555555555666555544 333333221
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHH
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIIT 292 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~ 292 (500)
.|...+|+.|+.+|...||... .+..++ -...+...+...|.-.....++..+.-. +.-||...
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 4555566666666666666554 111111 1112223333444444444444433221 22233322
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
. +.-....|.++.+++++..+...... . ++...++-+.... .+++...+.+...+ .|+..+|.+++..-.
T Consensus 145 ~---illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 A---ILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred H---HHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 1 12223345555555555443221100 0 0111122222221 12222222222221 356666666666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
..|+++.|..++.+|.+.|++.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+..+.++|.
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 666666666666666666665555544444433 55555556666666666666666666665555555443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-09 Score=99.78 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=165.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
.|+...|..-|+..++....++. .|.-+...|....+.++..+.|.+....+.. |..+|..-...+.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 46666677777777766544333 2666777788888888888888888877554 555666656666667888999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 010807 313 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 392 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 392 (500)
|++.+...+. +...|-.+.-+..+.++++++...|++.+++ ++--+..|+.....+...+++++|.+.|+..++....
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9888775332 5667777777777888999999999998876 3445788999999999999999999999988874322
Q ss_pred -------CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 393 -------MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 393 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+.+.+..+++..-.+ +++..|..++.+.++.+ +-....|..|...-.+.|+.++|+++|++-...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 223333344333333 88999999999998865 334678999999999999999999999987643
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-10 Score=99.79 Aligned_cols=198 Identities=11% Similarity=0.080 Sum_probs=111.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
.+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.+++..+... .+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHH
Confidence 344444444455555555555554443321 1344445555555555555555555555554422 23444555555555
Q ss_pred hcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 337 KARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
..|++++|...++....... ......+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 56666666666665554321 12234455566666667777777777776666432 24556666677777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777776655 233455566666666677777777776666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.5e-10 Score=99.66 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.....+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 34567778888888899999999999888776432 5677778888888899999999999888876433 566777888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
..+...|++++|.+.+++....... .....+..+..++...|++++|...+....... +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 8888899999999999988764322 234567777888889999999999999888754 33566788888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
++|...+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988876 344667777788888889999999988887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-08 Score=101.14 Aligned_cols=330 Identities=12% Similarity=0.086 Sum_probs=236.5
Q ss_pred ccCCHHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQR-WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKA 199 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 199 (500)
..+++..|+.+|....... ..+||+.+ .+...+.+.|+.+.|+..|....+. .|+...-...+..+-........
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHH
Confidence 3489999999999865432 24555432 3346678999999999999999875 44322211111111111124566
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA--PDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
+.+++.++...-... ..|++..+.|.+-|.-.|++..+..+...+...... .-...|-.+.++|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 888888888876544 567788999999999999999999999998775421 1235588899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHhHHHHHHHHHHh
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----LQGKAEYVFQKMTA 353 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~ 353 (500)
|.+..+....--+..+--|...|.+.|+++.+...|+.+.... +.+..|...|...|...+ ..++|..++....+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 9988876333223445678899999999999999999998863 346778888888887775 45667777777666
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CC
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELS----KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GV 426 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 426 (500)
.- +.|...|-.+...+... +...++.+|..+. ..+.++.+...|.+...+...|++.+|...|+..... ..
T Consensus 409 ~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 409 QT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 43 45677787777777654 4444477666544 3555577899999999999999999999999987754 12
Q ss_pred CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 427 TPDS------STYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 427 ~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.+|. .+-..+.+..-..++++.|.+.|+...+.
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2333 23444556666777888888888888754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-09 Score=108.30 Aligned_cols=270 Identities=12% Similarity=-0.005 Sum_probs=190.6
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcC-----cchHHHHHHHHHHHHHhh
Q 010807 143 ADTGIYSKLIAVMGK-----KGQTRLAMWLFSEMRNSGCRPDP-SVYNALITAHLHT-----RDKAKALAKALGYFQKMK 211 (500)
Q Consensus 143 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-----~~~~~~~~~a~~~~~~~~ 211 (500)
.+...|...+.+... .++.++|..+|++..+. .|+. ..|..+..++... ....+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 344555566655322 23468999999999875 5654 3444444333311 113466899999999998
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 212 GMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291 (500)
Q Consensus 212 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 291 (500)
+.. +.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++..+.... +..
T Consensus 332 ~ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 753 557888889999999999999999999999987644 5677888899999999999999999999987544 223
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMY 370 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~ 370 (500)
.+..++..+...|++++|+..+++......+-+...+..+..++...|+.++|...+..+... .|+ ....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 333444456668999999999999877643335666788888999999999999999887664 344 44455566677
Q ss_pred hccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 371 GYCDNVSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
...| ++|...++.+.+.. -.+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 47888777766521 11212222 44455666777777666 7777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.8e-10 Score=97.73 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=150.2
Q ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 010807 184 NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTY-NGVM 262 (500)
Q Consensus 184 ~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll 262 (500)
+.+-.+|. +.|.+.+|.+.|+..... .|-+.||..|-++|.+..+...|+.+|.+-.+. .|-.+|| .-+.
T Consensus 227 ~Q~gkCyl----rLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYL----RLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHH----HhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 33455555 556666666666666542 566667777777777777777777777665553 2333333 3444
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 342 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 342 (500)
..+-..++.++|.++++...+... .++.....+...|.-.++.+.|+.+|+++++.|+. +...|+.+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 556666777777777777666532 25555555666666667777777777777777765 6677777777777777777
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
-++.-|.+.+..--.|+ ..+|-.+.......||+..|.+.|+-....+.. +...+|.|.-.-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 77777777666433343 445666777777778888888888777765533 466777777777777888888887777
Q ss_pred HHhC
Q 010807 421 SHNM 424 (500)
Q Consensus 421 m~~~ 424 (500)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 6653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-08 Score=93.84 Aligned_cols=326 Identities=10% Similarity=0.050 Sum_probs=198.1
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcch
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 196 (500)
+.|.+.+.++-|..+|....+- ++.+...|...+..=-..|..+.-..+|++....- +-....|-....-+- .
T Consensus 524 ~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w----~ 596 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW----K 596 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH----h
Confidence 3445556666677777776664 45566677777777677777777777777777651 222233333333333 5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.|++..|..++....+. .+.+...|-..+..-..+.++++|..+|.+.... .|+...|.--+..---.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 56677777777776642 2445667777777777777777777777776553 4455555555555555667777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 277 VLSRMKSNQCKPD-IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 277 ~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
++++..+. -|+ .-.|-.+...+-+.++.+.|.+.|..-.+. ++-....|-.+...=-+.|..-+|..+++...-.+
T Consensus 673 llEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 77776664 233 334566666677777777777776655443 33345566666666666677777777777766654
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-----------------------------CCCCHHHHHHHHHHHH
Q 010807 356 YTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-----------------------------KDMKVSTLNAMLEAYC 406 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-----------------------------~~~~~~~~~~li~~~~ 406 (500)
+-+...|-..|++-.+.|..+.|..++.+....- ...|+.+.-++...|.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 4456677777777777777777776666554321 1224444455555555
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
....+++|.+.|.+....+ +-+..+|..+...+.+.|.-++-.+++.+...
T Consensus 829 ~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 5556666666666655543 22344555556666666655555555555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-12 Score=82.48 Aligned_cols=50 Identities=36% Similarity=0.654 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-07 Score=85.02 Aligned_cols=325 Identities=11% Similarity=0.081 Sum_probs=220.7
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~ 202 (500)
..++.|..+|+...- ..|++..|-.....=-++|++..|..+|+...+. -.|...-..++.++++....+..++.
T Consensus 188 keieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ER 262 (677)
T KOG1915|consen 188 KEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYER 262 (677)
T ss_pred hHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666655544 2356666666666666666666666666666543 22344444455555554446666777
Q ss_pred HHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 010807 203 ALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNAL--------FKELHESILAPDIYTYNGVMDAYGKNGMIK 272 (500)
Q Consensus 203 a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 272 (500)
|.-+|.-... .++.+ ...|......=-+-|+....... |+.+.+.+. .|-.+|--.+..-...|+.+
T Consensus 263 ar~iykyAld--~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 263 ARFIYKYALD--HIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHH--hcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHH
Confidence 7777766653 23333 44454444444445554433332 334444332 36677777777777889999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHH--------HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 010807 273 EMESVLSRMKSNQCKPDI--ITFNLLIDS--------YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG----KA 338 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~--~~~~~li~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~ 338 (500)
...++|++...+ ++|-. ..|...|-. =....+.+.+.++|+..++. ++...+||..+--.|+ +.
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 999999998876 33311 122222211 13468889999999988884 5556777776655554 56
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
.+...|..++...+ |..|...++...|..-.+.+++|.+..++++.++.++. +..+|......=...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 78888999888765 45788899999999999999999999999999998743 6888888888888999999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 419 ENSHNMG-VTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 419 ~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
+-.++.. +......|...|..-...|.++.|..+++++.+..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9988753 22234566777777788999999999999999764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.3e-10 Score=96.26 Aligned_cols=237 Identities=8% Similarity=-0.036 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
..|-+--+-+.++|.+.|.+.+|.+.|+.-.+. .|...||..|-+.|.+..+++.|+.++.+-.+. .+-|+....-+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhh
Confidence 334444466888899999999999999887765 456678888889999999999999999888776 22244444567
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
...+...++.++|.++|+...+.. ..++.....+...|.-.++++.|...++++.+.|+ -+...|+.+.-+|.-.+++
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 778888899999999999888763 34677777777788888999999999999999885 4778888888888888999
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
|-++.-|.+....--.|+ ..+|-.+.......|++.-|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999988888776433333 5678888888888899999999998888765 3456788888888889999999999988
Q ss_pred HHHHC
Q 010807 455 RMEQN 459 (500)
Q Consensus 455 ~m~~~ 459 (500)
.....
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 77643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-09 Score=96.40 Aligned_cols=277 Identities=12% Similarity=0.035 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..+++.+..++++...+.. ++....+..-|..+...|+..+-..+=..|.+.-+. ...+|-.+.-.|.-.|+..+|.
T Consensus 256 ~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHH
Confidence 5667888888888887644 555666666677888888877777777777766433 6678888888888888889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+.|.+....+.. =...|-...+.|.-.+..++|+..+...-+. .+-...-+--+.--|.+.+..+.|...|.+.....
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 888887654322 2446778888888888888888888765543 11112223334556778888888888888877653
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 010807 356 YTPSFITYECIITMYGYCDNVSRAREIFDELSK----LG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 429 (500)
+-|+..++-+.-.....+.+.+|..+|+.... .+ ...-..+++.|..+|.+.+.+++|+..+++.+... +-|
T Consensus 411 -P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~ 488 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKD 488 (611)
T ss_pred -CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCc
Confidence 45677777777777778888888888887662 11 11134568888888999999999999998887764 557
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCC
Q 010807 430 SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 481 (500)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 481 (500)
..++..+.-.|...|+++.|.+.|.+.. .+.|+..+..+++..+......
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~~~~ 538 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIEDSEC 538 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHhhhh
Confidence 8888888888888999999999888776 6788888888888776655333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-08 Score=98.19 Aligned_cols=295 Identities=12% Similarity=0.109 Sum_probs=206.5
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-cCc-
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL-HTR- 194 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~- 194 (500)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++++ |+...|-..+..+. -..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 4456679999999999886654 45556778888899999999999999999999984 66666655554443 110
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 195 DKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV-DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
......+....+|+++... -|.......+.-.+.....+ ..+...+..+...|++ .+|+.+-..|....+.+-
T Consensus 88 ~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 0223577888889888753 34433333332222222233 3455666777788866 356666666665555555
Q ss_pred HHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 274 MESVLSRMKSN----Q----------CKPDII--TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 274 a~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
..+++...... + -.|+.. ++.-+...|...|++++|++++++.++..+ ..+..|..-...+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHH
Confidence 66666665432 1 124443 445567778889999999999999988532 247788888999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH------H--HHHHHHHHhcC
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVST------L--NAMLEAYCMNG 409 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~--~~li~~~~~~g 409 (500)
.|++.+|...++...... .-|...-+-.+..+.++|++++|.+++....+.+..|.... | .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998865 45677777788888999999999999998887664332222 2 44567888999
Q ss_pred ChhhHHHHHHHHHh
Q 010807 410 LPTEADLLFENSHN 423 (500)
Q Consensus 410 ~~~~A~~~~~~m~~ 423 (500)
++..|+..|....+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-12 Score=80.42 Aligned_cols=50 Identities=38% Similarity=0.654 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777777777777777777776777777777777666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5e-07 Score=86.39 Aligned_cols=342 Identities=11% Similarity=0.058 Sum_probs=164.4
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHcCcchHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM----RNSGCRPDPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~~~~~~ 198 (500)
.-++.|..++.+.++. ++.+..+|-+....=-.+|+.+...+++++- ...|+..+...|-.=...|- ..|
T Consensus 420 etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e----~ag 493 (913)
T KOG0495|consen 420 ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE----DAG 493 (913)
T ss_pred HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh----hcC
Confidence 4556777777777776 5677777877777777788888888877653 34566666555544444333 222
Q ss_pred HHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.+-.+..+....... |+ ..-..||+.-...|.+.+.++-|..+|...++--. -+...|......=-..|..+....
T Consensus 494 sv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred ChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHH
Confidence 233333333333321 11 11133455555555555555555555555544321 233444444444444455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 010807 277 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 356 (500)
+|++....-. -....|-....-+-..|+...|..++....+..+. +...|..-+..-.....++.|..+|.+....
T Consensus 572 llqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 572 LLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 5555554421 13333444444444455555555555555544322 4455555555555555555555555554442
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKL 435 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 435 (500)
.|+...|.--+...--.++.++|.+++++..+. ++.-...|-.+...+-+.++.+.|.+.|..-.+. .|+ ...|..
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHH
Confidence 344444444444444445555555555554443 1112334444444444444444444444433222 222 223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 480 (500)
|.+.=-+.|..-.|..++++..-++ +-+...|.+.|+.=-+.|+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn 768 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGN 768 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCC
Confidence 3333334444444444444443322 1233334444444434333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-10 Score=110.97 Aligned_cols=274 Identities=15% Similarity=0.146 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 166 WLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 245 (500)
Q Consensus 166 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 245 (500)
.++-.+...|+.|+..||..+|.-|| ..|+++.|- +|.-|.- ...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----TKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----ccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-----
Confidence 35566777888898889999988888 667787777 7777765 455667778888888888888877766
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCC
Q 010807 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-KEKPT 324 (500)
Q Consensus 246 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 324 (500)
.|...||.+|+.+|...|++.. |+...+ -.-.++..+...|.-.....++..+.-. +..||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 6788888899999988888765 222222 1223333444445444444444443211 22333
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
..+ .+.-....|-++.+..++..+.... ..|... +++-+.... .+++-..+.....+ .|++.+|.+++
T Consensus 142 a~n---~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l 211 (1088)
T KOG4318|consen 142 AEN---AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVL 211 (1088)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHH
Confidence 332 3333445556666666665443221 011111 244333322 23333333333333 47888888888
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCC
Q 010807 403 EAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAG 481 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 481 (500)
.+-...|+.+.|..++.+|.+.|++.+..-|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+...|..
T Consensus 212 ~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 212 KRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred HHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence 8888889999999999999988888888888888766 777888888888888889999988888777777664443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-07 Score=86.70 Aligned_cols=145 Identities=14% Similarity=0.157 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHH
Q 010807 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203 (500)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a 203 (500)
++..|..+|+...... ..+...|-..+.+=.++..+..|..+++.....=...|..-|.. + ......|++..|
T Consensus 88 e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~----ymEE~LgNi~ga 160 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-I----YMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-H----HHHHHhcccHHH
Confidence 3444555555554433 22444455555555555555555555555443211111111111 1 111133444445
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
.++|++-.. ..|+...|++.|+.=.+-+.++.|..+|+...- +.|+..+|.-....=.+.|....+..+|+.
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 555544443 245555555555554555555555555544432 224444444444444444444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-09 Score=101.16 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-----CCC-CC
Q 010807 223 YNILLRACAQARNVDQVNALFKELHES-----IL-AP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-----QCK-PD 289 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~-~~ 289 (500)
.+.+...|...+++++|..+|+++... |- .| -..+++.|-..|.+.|++++|...+++..+. |.. |.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 335555666666666666666665431 11 11 1244555555666666666666655554321 111 12
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC------
Q 010807 290 II-TFNLLIDSYGKRQAFDKMEQVFKSLMHS---KEKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK------ 355 (500)
Q Consensus 290 ~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------ 355 (500)
+. .++.+...|+..+++++|..+++...+. -+.+ -..+++.|...|...|++++|.++++......
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC
Confidence 22 2455566667777777777777644321 0111 12456666666666666666666666554321
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 356 -YTPSFITYECIITMYGYCDNVSRAREIFDELSK----LGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 356 -~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
..-....++.+...|.+.+..++|.++|.+... .|+ +-...+|..|...|...|++++|.++.+..
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 111123445555555555555555555543322 111 112344555555555555555555555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.5e-08 Score=93.90 Aligned_cols=291 Identities=16% Similarity=0.121 Sum_probs=206.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHH-HHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY-NALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY-NILLR 228 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~ 228 (500)
...++...|++++|++.++.-... -+|...+ ......+. +.|+.++|..+|..+... .|+...| ..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~----kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLL----KLGRKEEAEKIYRELIDR---NPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHH
Confidence 345667899999999999886543 4565544 44455555 778899999999999874 4555554 44444
Q ss_pred HHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 229 ACAQ-----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 229 ~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
+..- ..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+..+|++ .+|+.|-..|..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d 155 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKD 155 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcC
Confidence 4422 235778889999887654 3333333332222222223 3456667777888865 356777777776
Q ss_pred cCCHHHHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHS----K----------EKPTL--PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYEC 365 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ 365 (500)
..+.+-..+++...... + -.|+. .++..+...|...|++++|..+++..++. .|+ ...|..
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~ 233 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMT 233 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHH
Confidence 66666666676665432 1 12333 35566778899999999999999999986 455 778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH------H--HHHH
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST------Y--KLLY 437 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------~--~~li 437 (500)
-.+.+-+.|++.+|.+.++.....+.. |..+-+-.+..+.+.|++++|.+++......+..|-... | ....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999997754 788888888999999999999999999887765443211 2 3446
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 010807 438 KAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.+|.+.|++..|++.|....+
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 689999999988887766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-08 Score=96.11 Aligned_cols=244 Identities=18% Similarity=0.170 Sum_probs=180.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHHhC--
Q 010807 214 ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-----I-LAPDIYTY-NGVMDAYGKNGMIKEMESVLSRMKSN-- 284 (500)
Q Consensus 214 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~m~~~-- 284 (500)
.+.+.-..+...+...|...|+++.|+.+++...+. | ..|...+. +.+...|...+++++|..+|+++...
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 344666666666999999999999999999887653 2 12333333 33667888999999999999988643
Q ss_pred ---CCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 285 ---QCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS-----K-EKPTL-PTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 285 ---~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
|-. --..+++.|..+|.+.|++++|...+++..+- + ..+.+ .-++.++..|+..+++++|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 222 23456788888999999999998888765431 1 12222 346677788899999999999998765
Q ss_pred hC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 353 AM---KYTPS----FITYECIITMYGYCDNVSRAREIFDELSKL-----G--KDMKVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 353 ~~---~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
+. -+.++ ..+++.|...|...|++++|.+++++++.. + ..-....++.|...|.+.+.+.+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 42 12222 468999999999999999999999988751 1 1122456788899999999999999999
Q ss_pred HHHHh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 419 ENSHN----MGV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 419 ~~m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+... .|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 87543 332 233 4689999999999999999999988776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-08 Score=88.15 Aligned_cols=219 Identities=8% Similarity=-0.067 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+..+.++.-+.++.......|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 4556666666666542222222 345667777777788888888888777776443 5677777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+.|++..+.... +...|..+..++...|++++|++.|+...+..+. +. ........+...++.++|...+.......
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 777777765333 4556666777777777777777777777664332 22 11111222334566777777775544322
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---CCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 356 YTPSFITYECIITMYGYCDNVSRAREIFDELSK---LGK---DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
.++...+ .+... ..|+...+ +.+..+.+ ..+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 196 -~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 22222 23333332 23333332 110 0123456666677777777777777777766554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.3e-08 Score=90.91 Aligned_cols=285 Identities=11% Similarity=0.006 Sum_probs=172.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHH
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 222 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (500)
.+......-.+-+...+++.+..++++...+.. ++....+..-|.++...++ ..+-..+=.++.. ..+....+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~----~n~Lf~lsh~LV~--~yP~~a~s 314 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGK----SNKLFLLSHKLVD--LYPSKALS 314 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcc----cchHHHHHHHHHH--hCCCCCcc
Confidence 355556666666667777777777777766542 3444455555555653333 3333333333332 12445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSY 300 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~ 300 (500)
|-++.--|...|+..+|.+.|.....-... =...|-.....|+-.|..|+|...+...-+. |.. -+..| +.--|
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey 390 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEY 390 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHH
Confidence 777777777777777777777665432211 1245666666677777777777766655443 221 11122 23345
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--C----CCCHHHHHHHHHHHhccC
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--Y----TPSFITYECIITMYGYCD 374 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~----~~~~~~~~~li~~~~~~~ 374 (500)
.+.+.++.|.++|.+.... .+.|+...+-+.......+.+.+|..+|+..+..- + .--..+++.|..+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 6667777777777776654 23366667776666666777777777776665210 0 012345677777777778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
.+++|+..+++..... +-+..++.++.-.|...|+++.|++.|.+.... .||..+...++..+..
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 8888887777777654 336777777777777778888888887776653 6776666666665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-08 Score=84.32 Aligned_cols=197 Identities=12% Similarity=0.034 Sum_probs=120.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
+...|.-.|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+-|++.+...+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445555666677777777777766666433 4556666666666677777777777666664332 4555666666666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
..|++++|...|+.......-+ -..+|..+.-+..+.|+.+.|.+.|++..+.... ...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 6667777776666666532111 2456666666666667777777776666665432 2444555666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+++.....+. ++..+....|+.-...|+.+.+-++=..+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66666665553 666666666666666666666665544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-07 Score=87.78 Aligned_cols=228 Identities=14% Similarity=-0.022 Sum_probs=163.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 233 ARNVDQVNALFKELHESI-LAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (500)
.+..+.++.-+.+++... ..|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 346677777787777543 2222 356778888899999999999999999987544 688999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
+..|++..+..+. +..+|..+..++...|++++|...++...+.. |+..........+...++.++|...|.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999885433 57788889999999999999999999998854 44322222223345678899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010807 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GV--T-PDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463 (500)
Q Consensus 390 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 463 (500)
. .++. |. ........|+..++ +.+..+.+. .+ . .....|..+...+.+.|++++|...|++..+.+. |
T Consensus 195 ~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~ 268 (296)
T PRK11189 195 L-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y 268 (296)
T ss_pred C-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence 2 2222 22 22333446666554 345554422 11 1 1245799999999999999999999999997653 3
Q ss_pred CHHHHHH
Q 010807 464 NKRFFLE 470 (500)
Q Consensus 464 ~~~~~~~ 470 (500)
|..-+..
T Consensus 269 ~~~e~~~ 275 (296)
T PRK11189 269 NFVEHRY 275 (296)
T ss_pred hHHHHHH
Confidence 4444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.6e-07 Score=86.61 Aligned_cols=306 Identities=11% Similarity=-0.005 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 010807 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC-RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223 (500)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (500)
...|..+...+...|+.+.+...+....+... .++...... +.+.... ..|++++|.+.+++.... .+.+...+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~--~~g~~~~A~~~~~~~l~~--~P~~~~a~ 80 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSAW--IAGDLPKALALLEQLLDD--YPRDLLAL 80 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH--HcCCHHHHHHHHHHHHHH--CCCcHHHH
Confidence 44556666666666777776666665543211 122211111 1111111 456677777777776642 23344444
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 224 NILLRACAQ----ARNVDQVNALFKELHESILAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 224 ~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
.. ...+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~ 156 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAH 156 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 42 222222 3444444444443 1122233 334445556777788888888888888776433 4566777777
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHh
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEK-PTL--PTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITY-E--CIITMYG 371 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~li~~~~ 371 (500)
+|...|++++|+..+++....... ++. ..|..+...+...|++++|..+++....... .+..... + .++.-+.
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLE 236 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHH
Confidence 888888888888888877664321 222 3455677778888888888888888754322 1111111 1 2233333
Q ss_pred ccCCHHHHHHH---HHHHHHCCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC------C--CHHHHHHHHHH
Q 010807 372 YCDNVSRAREI---FDELSKLGK-DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT------P--DSSTYKLLYKA 439 (500)
Q Consensus 372 ~~~~~~~A~~~---~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------p--~~~~~~~li~~ 439 (500)
..|..+.+.+. ......... ............++...|+.++|..+++.+...... . ..........+
T Consensus 237 ~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~ 316 (355)
T cd05804 237 LAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY 316 (355)
T ss_pred hcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence 34433322222 111111100 111122235666777888899998888887653211 0 11122222335
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 010807 440 YTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~ 459 (500)
+...|++++|.+.+......
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 56889999999888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.8e-06 Score=80.56 Aligned_cols=383 Identities=12% Similarity=0.067 Sum_probs=207.3
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHhh---hcc--CcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHH
Q 010807 79 SKELVRVLMRSFSDKEPLVRTLNKYV---KVV--RSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIA 153 (500)
Q Consensus 79 a~~l~~~l~~~~~~~~~~~~~l~~~~---~~~--~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 153 (500)
...++..+-+...+ +++..++.... ..+ +.+..+.-+-.+.+.++|++|+.+.+.-... ..+...+..-..
T Consensus 12 ~~~l~t~ln~~~~~-~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAY 87 (652)
T KOG2376|consen 12 LEALLTDLNRHGKN-GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHHHHhccc-hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHH
Confidence 35667766554322 34433333322 221 1222223344455668888888555442211 111111122344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC----------------
Q 010807 154 VMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDKAKALAKALGYFQKMKGMERC---------------- 216 (500)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------------- 216 (500)
+..+.+..++|+..++. ..++.. +...--..+. +.|++++|+++|+.+.....-
T Consensus 88 c~Yrlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlY----rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~ 158 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKG-----LDRLDDKLLELRAQVLY----RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA 158 (652)
T ss_pred HHHHcccHHHHHHHHhc-----ccccchHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 55578888888888873 333332 3333333444 788899999999988542100
Q ss_pred -----------CCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhCC-------------CCCCHH-HHHHHHHHHhhc
Q 010807 217 -----------KPNIVTYNILL---RACAQARNVDQVNALFKELHESI-------------LAPDIY-TYNGVMDAYGKN 268 (500)
Q Consensus 217 -----------~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~ll~~~~~~ 268 (500)
.| ..+|..+- -.+...|++.+|+++++...+.+ +.-... .-..+.-.+...
T Consensus 159 l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 159 LQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 01 11222222 23456788888888887773221 000111 112334456678
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCCHH-HHHHHHH-----------------------------
Q 010807 269 GMIKEMESVLSRMKSNQCKPDII----TFNLLIDSYGKRQAFD-KMEQVFK----------------------------- 314 (500)
Q Consensus 269 g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~-~a~~~~~----------------------------- 314 (500)
|+.++|.+++......... |.. .-|.|+..-....-++ .++..++
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776543 321 2222322211111111 0000000
Q ss_pred -----------HHHhC--CCCCCHHHHHHHHHHHHh--cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 315 -----------SLMHS--KEKPTLPTFNSMIINYGK--ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 315 -----------~~~~~--~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
+.... +..| ...+.+++..+.+ ...+.++..++...-+....-...+.-.++......|+++.|
T Consensus 317 ~l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 317 ALFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HHHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 00000 1111 2334444443332 223566666666655543222244556677788899999999
Q ss_pred HHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHHcCC
Q 010807 380 REIFD--------ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSS----TYKLLYKAYTKANM 445 (500)
Q Consensus 380 ~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~----~~~~li~~~~~~g~ 445 (500)
.+++. .+.+.+.. +.+..++...+.+.++-+.|..++.+.+.. .-.+... ++..+...-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 55555544 456667788888888888888888776542 0122223 33333344467899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 010807 446 KELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 446 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 480 (500)
.++|..+++++.+. .++|..+...++.+|++...
T Consensus 474 ~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 474 EEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred hHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCH
Confidence 99999999999975 36788999999999987643
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-06 Score=79.85 Aligned_cols=285 Identities=9% Similarity=0.002 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHH
Q 010807 126 LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALG 205 (500)
Q Consensus 126 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~ 205 (500)
..|...+-.+.....++.|+.....+...+...|+.++|+..|+..... .|+..+---+...+.. ..|+++....
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~---~eg~~e~~~~ 287 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG---QEGGCEQDSA 287 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH---hccCHhhHHH
Confidence 3344444444333335666667777777777777777777777766542 3433221111111111 4445555555
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 206 YFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
+...+.... +.+...|-.-+.......++..|+.+-+..++.... +...|..-...+...|+.++|.--|.......
T Consensus 288 L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 288 LMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 544444211 233344444444455566666676666666554322 34444444455666667777666666665442
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHh-cCCHhHHHHHHHHHHhCCCCCC-HHH
Q 010807 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI-INYGK-ARLQGKAEYVFQKMTAMKYTPS-FIT 362 (500)
Q Consensus 286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~~~~~~a~~~~~~m~~~~~~~~-~~~ 362 (500)
. -+..+|.-|+++|...|.+.+|.-.-+...+. ...+..+.+.+. ..|.. ...-++|..+++.-... .|+ ...
T Consensus 365 p-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~A 440 (564)
T KOG1174|consen 365 P-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPA 440 (564)
T ss_pred h-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHH
Confidence 1 25566777777777777777666555544433 222444444332 22221 22235666666655542 344 344
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+.+...|...|..++++.+++..... .||....+.|...+...+.+++|++.|......
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 555566666667777777777666653 356666667777777677777777766666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-07 Score=86.75 Aligned_cols=195 Identities=11% Similarity=0.059 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
|--+...|....+.++..+.|+...+.+.. |..+|..-...+.-.+++++|..=|++....... +...|..+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHH
Confidence 444444555555555555555555554433 3444444444444455555555555555544322 34444444444455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-----CCHHH--HHHHHHHHhccCC
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-----PSFIT--YECIITMYGYCDN 375 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~--~~~li~~~~~~~~ 375 (500)
.+++++++..|++.+.. .+..+..|+.....+...++++.|.+.|+..++.... .+..+ .-.++.. .-.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhh
Confidence 55555555555555544 3334555555555555555555555555555442100 01111 1111111 12266
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
+..|.+++++..+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665433 34456666666666667777776666644
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-07 Score=77.43 Aligned_cols=199 Identities=11% Similarity=-0.040 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
+..-|.-.|...|+...|..-+++.++.... +..++..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445555666667777777766666665433 4556666666666677777777766666655333 5555666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 380 (500)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 6667777777666665542222 23466666666666677777777776666643 222444555666666666776676
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..++.....+. ++..+.-..|..-...|+.+.+-++=..+...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666543 55666656666666666666665555554443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.4e-06 Score=78.26 Aligned_cols=322 Identities=14% Similarity=0.145 Sum_probs=161.2
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.++++|++.|......+ +.|..+|.-+.-.-++.|+++.....-..+.+. .|. ...|..+..++. -.|++.
T Consensus 89 K~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~----L~g~y~ 160 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQH----LLGEYK 160 (700)
T ss_pred hhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHH----HHHHHH
Confidence 34566666666555543 445555555555555555555555555555443 222 223333333333 556666
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILL------RACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
.|..+.+.........|+...|.-.. ....+.|..+.|.+.+..-... +.-....-.+-...+.+.+++++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 66666666654332234444443322 2334455566666555443222 1101112233345566777777777
Q ss_pred HHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHHH-HHHHHH----------------------------------HhC
Q 010807 276 SVLSRMKSNQCKPDIITFN-LLIDSYGKRQAFDKME-QVFKSL----------------------------------MHS 319 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~-~~~~~~----------------------------------~~~ 319 (500)
.++..+... .||..-|. .+..++.+-.+.-++. .+|... .+.
T Consensus 240 ~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 240 KVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 777777766 34444433 3334443222222222 333322 222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHhccCCHHHHHHHH
Q 010807 320 KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT----AMK----------YTPSFIT--YECIITMYGYCDNVSRAREIF 383 (500)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~----------~~~~~~~--~~~li~~~~~~~~~~~A~~~~ 383 (500)
|+++ ++..+...|-.-...+-..++.-.+. ..| -+|+... +-.++..+-..|+++.|...+
T Consensus 318 g~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yI 394 (700)
T KOG1156|consen 318 GVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYI 394 (700)
T ss_pred CCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 2221 12222222211111111111111111 111 0344333 345666777788888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 010807 384 DELSKLGKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 384 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 461 (500)
+....+- |+ +..|..=.+.+...|++++|..++++..+.+ .+|...-.--..-..+....++|.++.....+.|.
T Consensus 395 d~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 395 DLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 7777653 32 3344444567777788888888888777665 45554444555555677777888877777777664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-05 Score=74.44 Aligned_cols=357 Identities=12% Similarity=0.121 Sum_probs=171.8
Q ss_pred CchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHhcCCHHHH---
Q 010807 93 KEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRW-----YIADTGIYSKLIAVMGKKGQTRLA--- 164 (500)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A--- 164 (500)
++...++.+.|.+. .+++....++-+.+.+++++|-+.+.....+.. -+.+-..|..+-+..+++-+.-.-
T Consensus 154 Pets~rvyrRYLk~-~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 154 PETSIRVYRRYLKV-APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred hHHHHHHHHHHHhc-CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 33445555555554 344577788888888888888887777654431 133445566665555554433222
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcC--------
Q 010807 165 MWLFSEMRNSGCRPD--PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR-------- 234 (500)
Q Consensus 165 ~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------- 234 (500)
..++..+... -+| ...|++|...|+ +.|.+++|.++|++.... .-++.-|+.+.++|+.-.
T Consensus 233 daiiR~gi~r--ftDq~g~Lw~SLAdYYI----r~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~m 303 (835)
T KOG2047|consen 233 DAIIRGGIRR--FTDQLGFLWCSLADYYI----RSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKM 303 (835)
T ss_pred HHHHHhhccc--CcHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHH
Confidence 2233333322 233 345666666666 666677777777665542 222223333333333211
Q ss_pred --------------CHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC-
Q 010807 235 --------------NVDQVNALFKELHESIL-----------APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP- 288 (500)
Q Consensus 235 --------------~~~~a~~~~~~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~- 288 (500)
+++-.+.-|+.+..... .-++..|..-+.. ..|+..+...++.+.... +.|
T Consensus 304 e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ 380 (835)
T KOG2047|consen 304 ELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPK 380 (835)
T ss_pred hhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcc
Confidence 12222233333322210 0122233222222 245556666666666543 111
Q ss_pred -----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--
Q 010807 289 -----DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-- 358 (500)
Q Consensus 289 -----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-- 358 (500)
-...|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|..+.+......-.|
T Consensus 381 ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~ 460 (835)
T KOG2047|consen 381 KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPEL 460 (835)
T ss_pred cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhh
Confidence 123466677777777777777777777655432211 2334444444445566666666666554321110
Q ss_pred ---------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 359 ---------------SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 359 ---------------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+...|+..++.-...|-++....+|+.+.+..+- ++.+.-.....+-.+.-++++.++|++-+.
T Consensus 461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence 1223444455555566666666666666664432 233333333333344445555555554333
Q ss_pred CCCCCCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCC
Q 010807 424 MGVTPDS-STYKLLYKAYTK---ANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 424 ~~~~p~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
.--.|+. ..|+..+.-+.+ .-+.+.|..+|++..+ |.+|.
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 3222332 233433333322 1234555555555555 44433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.3e-06 Score=79.32 Aligned_cols=295 Identities=9% Similarity=-0.043 Sum_probs=178.8
Q ss_pred CCHHHHHHHHHHHHHccCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIAD-TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~~~ 200 (500)
++.+.+...+....+......+ ..........+...|++++|.+++++..+. .|+ ...+.. ...+...+...+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCc
Confidence 4455555555554443211222 222333445667889999999999998875 343 333332 22222222234455
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
..+.+.+.... ...+........+...+...|++++|.+.+++..+.... +...+..+...+...|++++|...+++
T Consensus 97 ~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 97 DHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred hhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666655522 222333445566778889999999999999999887543 567788888999999999999999999
Q ss_pred HHhCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHhHHHHH--H-HH
Q 010807 281 MKSNQC-KPDI--ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTF-N--SMIINYGKARLQGKAEYV--F-QK 350 (500)
Q Consensus 281 m~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~~a~~~--~-~~ 350 (500)
...... .++. ..|..+...+...|++++|+.++++...... .+..... + .++.-+...|..+.+..+ + ..
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~ 253 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADY 253 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 877532 2232 3455778889999999999999999864432 1222211 1 233333444543333333 2 11
Q ss_pred HHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 351 MTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD------M--KVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 351 m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
...... ............++...|+.+.|..+++.+...... . .+...-....++...|++++|.+.+...
T Consensus 254 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 254 AAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred HHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111100 111222235677788899999999999988763221 0 1222222334456889999999999887
Q ss_pred Hh
Q 010807 422 HN 423 (500)
Q Consensus 422 ~~ 423 (500)
..
T Consensus 334 l~ 335 (355)
T cd05804 334 RD 335 (355)
T ss_pred HH
Confidence 64
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-05 Score=74.81 Aligned_cols=335 Identities=13% Similarity=0.083 Sum_probs=190.3
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHcC
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV-YNALITAHLHT 193 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~ 193 (500)
+.-.+...|+|..+-+.|+....- .......|+.+...|...|.-..|+.+++.-....-.|+..+ +-..-..|..
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e- 405 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE- 405 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh-
Confidence 444556779999999999987664 233567799999999999999999999988765432343333 3222233332
Q ss_pred cchHHHHHHHHHH--------------------------------------------------HHHhhcCCCCCCCHHHH
Q 010807 194 RDKAKALAKALGY--------------------------------------------------FQKMKGMERCKPNIVTY 223 (500)
Q Consensus 194 ~~~~~~~~~a~~~--------------------------------------------------~~~~~~~~~~~~~~~~~ 223 (500)
+.+.+++++++ +++..+.++..|++..|
T Consensus 406 --~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~ 483 (799)
T KOG4162|consen 406 --RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFY 483 (799)
T ss_pred --chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Confidence 33344444443 33333323223332222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCC---------------
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCK--------------- 287 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~--------------- 287 (500)
-++ -|+..++.+.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 484 lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~ 561 (799)
T KOG4162|consen 484 LAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFN 561 (799)
T ss_pred HHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Confidence 222 23444555555555555555544445555555555555555555555555544322 110
Q ss_pred ---CCHHHHHHHHHHHhc-----------------------cCCHHHHHHHHHHH--------HhCC-----------CC
Q 010807 288 ---PDIITFNLLIDSYGK-----------------------RQAFDKMEQVFKSL--------MHSK-----------EK 322 (500)
Q Consensus 288 ---~~~~~~~~li~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~-----------~~ 322 (500)
--..|+..++..+-. .++..++.+....+ ...+ ..
T Consensus 562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~ 641 (799)
T KOG4162|consen 562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG 641 (799)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence 001111111111110 00000011000000 0000 01
Q ss_pred CC------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 323 PT------LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 396 (500)
Q Consensus 323 ~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 396 (500)
|+ ...|......+.+.+..++|...+.+..... +.....|......+...|.+++|.+.|......++ -++.
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP-~hv~ 719 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP-DHVP 719 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC-CCcH
Confidence 11 1123344455555666666665555555432 33455566666777778888888888888877653 2567
Q ss_pred HHHHHHHHHHhcCChhhHHH--HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 397 TLNAMLEAYCMNGLPTEADL--LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+..++..++.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|+...+.
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 78888899999998777777 888888876 557888999999999999999999988877654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-05 Score=71.95 Aligned_cols=305 Identities=11% Similarity=0.032 Sum_probs=215.2
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHHcCC
Q 010807 158 KGQTRLAMWLFSEMRNS-GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-VTYNILLRACAQARN 235 (500)
Q Consensus 158 ~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~ 235 (500)
.++...|...+-.+... -++-++.....+...+. ..|+.++|+..|++.... .|+. .......-.+.+.|+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----YNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----hhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccC
Confidence 45555555555544432 35556777777888887 777899999999988743 3332 222333344567888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (500)
.+....+...+.... .-+...|..-.......++++.|+.+-++....... +...|-.-...+...++.++|.-.|+.
T Consensus 282 ~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~ 359 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRT 359 (564)
T ss_pred HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHH
Confidence 888888887776542 123444555555566778899999998888776433 455555555677888999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHhc-cCCHHHHHHHHHHHHHCCCCC
Q 010807 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TMYGY-CDNVSRAREIFDELSKLGKDM 393 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~~~~~~A~~~~~~~~~~~~~~ 393 (500)
..... +-+...|.-|+.+|...|.+.+|..+-+..... ++.+..+.+.+. ..|.- -..-++|..+++...+..+.
T Consensus 360 Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~- 436 (564)
T KOG1174|consen 360 AQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI- 436 (564)
T ss_pred HHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-
Confidence 87642 247899999999999999999998887766553 244566666553 33332 23457899999988875432
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 394 KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
-....+.+...+...|....++.++++.... .||....+.|.+.+...+.+++|+..|..... +.|+..--..=++
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLR 512 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHH
Confidence 2556778888899999999999999998875 79999999999999999999999999987774 3455444333344
Q ss_pred HHhcC
Q 010807 474 TFSSS 478 (500)
Q Consensus 474 ~~~~~ 478 (500)
..-+.
T Consensus 513 ~lEK~ 517 (564)
T KOG1174|consen 513 LLEKS 517 (564)
T ss_pred HHHhc
Confidence 44433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-06 Score=73.78 Aligned_cols=290 Identities=12% Similarity=0.057 Sum_probs=179.6
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI-TAHL 191 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~ 191 (500)
..++..+.+..++.+|++++..-.++. +.+....+.+..+|....++..|-..|+++... .|...-|...- ..+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 345556666778888888887776653 346777888888999999999999999988764 45555444321 1222
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLR--ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 269 (500)
+.+.+.+|+.+...|.. .++...-..-+. .....+++..+..++++....| +..+.+.......+.|
T Consensus 90 ----~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 90 ----KACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred ----HhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 66678888888888774 233222111122 2234677777777777765322 4445555555567788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-------------CCHH----------
Q 010807 270 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-------------PTLP---------- 326 (500)
Q Consensus 270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~---------- 326 (500)
+++.|.+-|....+-+---....|+..+. ..+.++++.|++...++++.|++ ||+.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ 237 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence 88888888888776533334556665553 44567888888888887776542 1111
Q ss_pred -----HHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 327 -----TFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 327 -----~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
.+|.-...+.+.++++.|.+-+-.|.-+. ...|++|...+.-.-. .+++.+..+-+.-+...++ ....||..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 12222233456677888887777765422 2445666655433322 3344444444444555444 34778888
Q ss_pred HHHHHHhcCChhhHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~ 420 (500)
++-.||+..-++-|..++.+
T Consensus 316 lLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhh
Confidence 88888888888888777765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-05 Score=69.54 Aligned_cols=354 Identities=15% Similarity=0.079 Sum_probs=190.5
Q ss_pred HHHHHHhcCCCchHHHHHHHhhhccCcch-HHHH--HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC
Q 010807 83 VRVLMRSFSDKEPLVRTLNKYVKVVRSEH-CFLL--FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG 159 (500)
Q Consensus 83 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~l--~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 159 (500)
++.++.. .|-.-...++..-...++.+. -..+ ....-+.|++++|+..|+.+.... .++...+-.+.-.+.-.|
T Consensus 29 Ledfls~-rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSN-RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhc-ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHH
Confidence 4444443 333344555554444444433 2222 233345699999999999988754 567777777777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 010807 160 QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQV 239 (500)
Q Consensus 160 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 239 (500)
.+.+|..+-... |+....+.|+-.+++ +.++-++-..+-+.+.. +..--.+|.......-.+.+|
T Consensus 106 ~Y~eA~~~~~ka------~k~pL~~RLlfhlah---klndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 106 QYIEAKSIAEKA------PKTPLCIRLLFHLAH---KLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHHHHHhhC------CCChHHHHHHHHHHH---HhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHH
Confidence 889888876654 455555555555554 44555555544444432 223344566666666789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHHHhCCCCCCHH---------------------------
Q 010807 240 NALFKELHESILAPDIYTYNGVM-DAYGKNGMIKEMESVLSRMKSNQCKPDII--------------------------- 291 (500)
Q Consensus 240 ~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------------------------- 291 (500)
+.+|....... |+-...|.-+ -+|.+..-++-+.++++-....- +.++.
T Consensus 171 IdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~lad 247 (557)
T KOG3785|consen 171 IDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELAD 247 (557)
T ss_pred HHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHh
Confidence 99999987653 2222333222 23444444444444444333220 00111
Q ss_pred ---------------------------------------HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 292 ---------------------------------------TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 292 ---------------------------------------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
.--.|+-.|.+.+++.+|..+.+++. +.++.-|-.-.
T Consensus 248 N~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 248 NIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred cccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 11223334556666666666665541 11222121111
Q ss_pred HHHHhcCC-------HhHHHHHHHHHHhCCCCC-----------------------------------CHHHHHHHHHHH
Q 010807 333 INYGKARL-------QGKAEYVFQKMTAMKYTP-----------------------------------SFITYECIITMY 370 (500)
Q Consensus 333 ~~~~~~~~-------~~~a~~~~~~m~~~~~~~-----------------------------------~~~~~~~li~~~ 370 (500)
..+...|+ ..-|.+.|+..-+.+..- |...--.+..++
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk 403 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAK 403 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 11111111 222333333222221111 111113466777
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHH
Q 010807 371 GYCDNVSRAREIFDELSKLGKDMKVSTL-NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST-YKLLYKAYTKANMKEL 448 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~ 448 (500)
+..|.+.+|+++|-.+....++ |..+| ..|.++|.+++.++-|++++-++.. +.+..+ ...+.+-|.+.+.+--
T Consensus 404 ~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888777665554 34444 4556788888888888877766543 223333 3334557888888888
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 010807 449 VQKLLKRMEQNGIVPNKRF 467 (500)
Q Consensus 449 a~~~~~~m~~~g~~p~~~~ 467 (500)
|-+.|+.+.... |+++.
T Consensus 480 aaKAFd~lE~lD--P~pEn 496 (557)
T KOG3785|consen 480 AAKAFDELEILD--PTPEN 496 (557)
T ss_pred HHHhhhHHHccC--CCccc
Confidence 888887776543 44433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-07 Score=84.56 Aligned_cols=246 Identities=14% Similarity=0.093 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.|.+..++.-.+ ... ..-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.++.
T Consensus 14 ~G~Y~~~i~e~~-~~~-~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKS-FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp TT-HHHHCHHHH-CHT-STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred hhhHHHHHHHhh-ccC-CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 455666665444 221 111122334455666777777766443 3333322 5565555555554444445555555
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 277 VLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 277 ~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
-+++....... .+.........++...|++++|++++... .+.......+..|.+.++++.|...++.|.+..
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55444333322 22233333335566778888887776532 356666677778888888888888888887642
Q ss_pred CCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 356 YTPSFITYECIITMYG----YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
.| .+...+..++. ..+.+.+|..+|+++... ..+++.+.|.+..++...|++++|.+++.+....+ +-|..
T Consensus 162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d 236 (290)
T PF04733_consen 162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPD 236 (290)
T ss_dssp --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHH
T ss_pred --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHH
Confidence 33 33333444332 234578888888887654 45677788888888888888888888888877654 33566
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHC
Q 010807 432 TYKLLYKAYTKANMK-ELVQKLLKRMEQN 459 (500)
Q Consensus 432 ~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 459 (500)
+...++-.....|+. +.+.+++.++.+.
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 777777777777776 5666777776643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-05 Score=74.41 Aligned_cols=215 Identities=11% Similarity=0.005 Sum_probs=154.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-------H
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN-------S 330 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 330 (500)
...+.++..+..+++.+++-+....+.. -+..-++....+|...|.+..++..-+...+.|.. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 3556667777788888888888877765 36666777778888888888887777666555432 222222 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH-------------------------HHHHHHHhccCCHHHHHHHHHH
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITY-------------------------ECIITMYGYCDNVSRAREIFDE 385 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~A~~~~~~ 385 (500)
+..+|.+.++++.+...|.+.......|+...- -.=...+.+.|++..|...|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 444667778888999988887765444443221 1225566788999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 386 LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 386 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
+++.. +-|...|..-.-+|.+.|.+..|+.-.+..++.. ++....|.-=..++....+++.|.+.|++..+.. |+.
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~ 459 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSN 459 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chh
Confidence 99987 4588999999999999999999998888777653 2333444444556666778999999998888665 787
Q ss_pred HHHHHHHHHHhcCC
Q 010807 466 RFFLEALETFSSSL 479 (500)
Q Consensus 466 ~~~~~ll~~~~~~g 479 (500)
.-+..-+..|....
T Consensus 460 ~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 460 AEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHh
Confidence 77877787777754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-05 Score=84.34 Aligned_cols=333 Identities=9% Similarity=0.008 Sum_probs=206.8
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCHHHHHHHH--HHHHcC
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC------RPDPSVYNALI--TAHLHT 193 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~~~~~li--~~~~~~ 193 (500)
.|++..+...++.+.... ...+..........+...|++++|..++......-- .+....-...+ ..+.
T Consensus 387 ~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~-- 463 (903)
T PRK04841 387 QGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI-- 463 (903)
T ss_pred cCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH--
Confidence 456665555555442111 011222234455566788999999999988754310 11111111111 2222
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHH
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESIL-----APDIYTYNGVMDA 264 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~ 264 (500)
..|++++|...+++...... ..+ ....+.+...+...|++++|...+++.....- .....++..+...
T Consensus 464 --~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 464 --NDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred --hCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 56778999999988764211 112 23456677778889999999999988764311 1112345566677
Q ss_pred HhhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHH
Q 010807 265 YGKNGMIKEMESVLSRMKSN----QCK--P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK--EKP--TLPTFNSMII 333 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~ 333 (500)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876542 221 1 22334555666777899999999998775431 112 2344555667
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC--CCCCHH--H--HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 010807 334 NYGKARLQGKAEYVFQKMTAMK--YTPSFI--T--YECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEA 404 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~--~~~~~~--~--~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 404 (500)
.+...|++++|...+....... ...... . ....+..+...|+.+.|..++........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7888999999999988875421 111111 1 01122445568999999999877654221111 1124567778
Q ss_pred HHhcCChhhHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 405 YCMNGLPTEADLLFENSHNM----GVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
+...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88999999999999987653 32222 3456667778899999999999999998753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-05 Score=70.85 Aligned_cols=374 Identities=15% Similarity=0.158 Sum_probs=221.1
Q ss_pred CCCCccchhHHHHHHHHHHhcCCCchHHH-HHHHhhhccCcchHHHHHHHHc-----------------ccCCHHHHHHH
Q 010807 70 RGRKSEELESKELVRVLMRSFSDKEPLVR-TLNKYVKVVRSEHCFLLFEELG-----------------KSDKWLQCLEV 131 (500)
Q Consensus 70 ~~~~~~~~~a~~l~~~l~~~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~l~-----------------~~~~~~~A~~~ 131 (500)
....+...+|......|++..++.....+ -+-...+....+++..+++... +.+..++|+..
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 45566778888888888887766544322 1323334444555554443322 23556667666
Q ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHH
Q 010807 132 FRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP---------------------------DPSVYN 184 (500)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------------------~~~~~~ 184 (500)
++... +.|..+...-...+.+.|++++|.++|+.+.+.+..- ...+|.
T Consensus 102 ~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 102 LKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYE 176 (652)
T ss_pred Hhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHH
Confidence 66222 2345677777888999999999999999986654211 011333
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHh--------hcCCCCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010807 185 ALITAHLHTRDKAKALAKALGYFQKM--------KGMERCKPNIV-----TYNILLRACAQARNVDQVNALFKELHESIL 251 (500)
Q Consensus 185 ~li~~~~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 251 (500)
.+....|..- ..|++.+|+++++.. ...+...-+.. +---|.-++...|+.++|..+|...++...
T Consensus 177 l~yN~Ac~~i-~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 177 LLYNTACILI-ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 3332222111 678999999999998 22111101111 122345567789999999999999988754
Q ss_pred CCCHHH----HHHHHHHHhhcCCH----------------HHHHHHHHH-------------------------H-HhC-
Q 010807 252 APDIYT----YNGVMDAYGKNGMI----------------KEMESVLSR-------------------------M-KSN- 284 (500)
Q Consensus 252 ~p~~~~----~~~ll~~~~~~g~~----------------~~a~~~~~~-------------------------m-~~~- 284 (500)
. |... -|.|+..-....-+ +.++..|.. . ...
T Consensus 256 ~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 256 A-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred C-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 3 3322 22232211110000 001110000 0 000
Q ss_pred CCCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH--------HHHhC
Q 010807 285 QCKPDIITFNLLIDSYGK--RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ--------KMTAM 354 (500)
Q Consensus 285 ~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~ 354 (500)
+..|.. .+.+++..+.+ ...+..+.+++...-+....-...+--.++......|+++.|..++. .+.+.
T Consensus 335 ~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 335 GMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 112222 23333333222 22467777777777665444345666777888889999999999999 55554
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 428 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 428 (500)
+..| .+...++..+.+.++-+.|..++...... .-.+.. .++.-+...-.+.|+-++|..+++++.+.. ++
T Consensus 414 ~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~ 490 (652)
T KOG2376|consen 414 KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PN 490 (652)
T ss_pred ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-Cc
Confidence 4444 45677888888888888888888776641 011122 233334444457899999999999999864 78
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 429 DSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
|..+...++.+|++. +.+.|..+-++
T Consensus 491 d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999876 45666665443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-06 Score=71.47 Aligned_cols=293 Identities=13% Similarity=0.102 Sum_probs=202.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 225 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
-+++++..+.+..++++|++++..-.++ .| +..-...+-.+|. ...++..|-+.|+++... .|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY----~~Q~f~~AA~CYeQL~ql---~P~~~qYrl 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYY----RLQEFALAAECYEQLGQL---HPELEQYRL 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHH----HHHHHHHHHHHHHHHHhh---ChHHHHHHH
Confidence 3677788888999999999999988876 34 5556666666777 778899999999999863 566555543
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 226 -LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMD--AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 226 -ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
-...+.+.+.+..|+++...|.+. ++...-..-+. .....+++..+..++++....| +..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 345667889999999999988764 22222122222 2345678888888888776433 44455555555678
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-------------CHH--------
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-------------SFI-------- 361 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------------~~~-------- 361 (500)
.|+++.|.+-|+...+-+---....|+..+. ..+.++++.|.+...++.++|++- |+.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 9999999999999887655546677877664 446789999999999998887532 211
Q ss_pred HHHHHH-------HHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 362 TYECII-------TMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 362 ~~~~li-------~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
.-+.++ ..+.+.++++.|.+.+-.|..+ ....|+.|...+.-.= -.+++.+..+-+.-+.... +-...||
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHH
Confidence 112333 3346778999999888887642 2234666665543222 2345555555555555543 2356899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 434 KLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
..++-.|+++.-++.|-.++.+-.
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCc
Confidence 999999999999999988876543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=0.00016 Score=68.25 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
.+....++++++..-..--..+|...++.-.+..-...|..+|.+..+.+..+ +..++++++..|| .+|.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555555555543222233456677777777777888888888888877666 6677788887777 578888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
--.+. +.-++.--...+.-+...++-..|..+|++....++.|| ...|..+|.-=..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 54442 223455556777778888888888888888888766655 367888888888888888888887777643
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00013 Score=70.38 Aligned_cols=323 Identities=10% Similarity=0.086 Sum_probs=209.3
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
.-|+-++|.+..+.-.+.+ .-+.+.|+.+.-.+....++++|++.|......+ +.|...|.-+--.-+ +.+++
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~----QmRd~ 125 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQI----QMRDY 125 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH----HHHhh
Confidence 3477788888877776643 4467889999999999999999999999998863 234555555444334 66777
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH------HHhhcCCHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYTYNGVMD------AYGKNGMIKE 273 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~g~~~~ 273 (500)
+.....-.+..+.. +.....|..+..++--.|+...|..++++..+.. -.|+...|..... ...+.|..++
T Consensus 126 ~~~~~tr~~LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 126 EGYLETRNQLLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 77777777666532 4456678888999999999999999999988765 3466666554433 3556788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc-CCHhHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-FNSMIINYGKA-RLQGKAEYVFQKM 351 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~-~~~~~a~~~~~~m 351 (500)
|++.+..-... +......-..-...+.+.+++++|..++..++.. .||..- |..+..++.+- +..+....+|...
T Consensus 204 ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 204 ALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88887765543 2212223345566788899999999999999885 345444 44444555422 2222222444433
Q ss_pred H----------------------------------hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CC---
Q 010807 352 T----------------------------------AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK----LG--- 390 (500)
Q Consensus 352 ~----------------------------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~--- 390 (500)
. +.|+++ ++..+...|-.-...+-..++.-.+.. .|
T Consensus 281 s~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 281 SEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred hhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 2 333222 122222222221111111111111111 11
Q ss_pred -------CCCCHHHHH--HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 391 -------KDMKVSTLN--AMLEAYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 391 -------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
-+|+...|. .++..|-+.|+++.|..+++..+++ .|+.. .|-.=.+.+.+.|+.++|..++++..+..
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 145555554 4567788899999999999999887 66644 44455678999999999999999888653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-06 Score=85.31 Aligned_cols=238 Identities=12% Similarity=0.048 Sum_probs=183.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+|--..-..+...+.+.|-...|..+|+.+. .|..++.+|+..|+..+|..+..+-.++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444444567778888999999999998753 5677888999999999999998888874 7899999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
.+......-+++|.++++..... .-..+.....+.++++++...|+.-.+.. +.-..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99988888899999998875332 22222223344788999999998877754 44577888888888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
+.|.+.|.......+ -+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|.+.+....+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999998887542 357789999999999999999999999999877 446667788888888999999999999988
Q ss_pred HHCC-CCCCHHHHHHHHHHH
Q 010807 457 EQNG-IVPNKRFFLEALETF 475 (500)
Q Consensus 457 ~~~g-~~p~~~~~~~ll~~~ 475 (500)
.+.. ..-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 7641 112444444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00023 Score=68.73 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
+...++-+.++++...-...|+.....-.+.....+|...+......|-.+.+..+|++.++. .| ..-+..|..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHH
Confidence 334455566667777777777766554323334456777777777788888888888877753 23 23455555555
Q ss_pred cCcchHHHHHHHHHHHHHhhc
Q 010807 192 HTRDKAKALAKALGYFQKMKG 212 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~ 212 (500)
..+++++|-+.+.....
T Consensus 181 ----~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 181 ----KSDRLDEAAQRLATVLN 197 (835)
T ss_pred ----hccchHHHHHHHHHhcC
Confidence 55566666666666543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.2e-07 Score=82.62 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=71.6
Q ss_pred HHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010807 264 AYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----AR 339 (500)
Q Consensus 264 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 339 (500)
.+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555554431 134444455555555556666655555555431 12 222223332222 23
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hhHHHHH
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-TEADLLF 418 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~ 418 (500)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+. -++.+...++-+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 455666666665443 345555556666666666666666666665554432 2444555555555555555 4455555
Q ss_pred HHHHh
Q 010807 419 ENSHN 423 (500)
Q Consensus 419 ~~m~~ 423 (500)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-05 Score=83.89 Aligned_cols=229 Identities=8% Similarity=0.057 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 291 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 291 (500)
+-....|-..|......++.++|.+++++.+.. +.+ -...|.++++.-...|.-+...++|+++.+. .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 344667888888888888888998888887654 211 1245666666666667778888888888765 21345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMY 370 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~ 370 (500)
.|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+..+.+.|..++.+.++.-.+ -......-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 6778888888888889999999888876 3346778888888888888888888888887764211 1234455566666
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 010807 371 GYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS--STYKLLYKAYTKANMKEL 448 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 448 (500)
.+.|+.+++..+|+......++ -...|+.+|..=.++|+.+.+..+|++.+..++.|-. ..|...+..=-+.|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7788888888888888776433 4778888888888888888888999888888776643 244445544445565444
Q ss_pred HH
Q 010807 449 VQ 450 (500)
Q Consensus 449 a~ 450 (500)
+.
T Consensus 1690 vE 1691 (1710)
T KOG1070|consen 1690 VE 1691 (1710)
T ss_pred HH
Confidence 33
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-06 Score=79.44 Aligned_cols=219 Identities=11% Similarity=0.043 Sum_probs=107.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKME 310 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 310 (500)
.+.|++.+|.-.|+...+..+. +...|.-|....+..++-..|+..+.+..+.... |....-+|.-.|...|.-..|.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 4455555555555555555433 4555555555555555555555555555554333 4445555555555555555555
Q ss_pred HHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHH-HhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 311 QVFKSLMHSKEKP--------TLPTFNSMIINYGKARLQGKAEYVFQKM-TAMKYTPSFITYECIITMYGYCDNVSRARE 381 (500)
Q Consensus 311 ~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 381 (500)
+.++..+...++- +...-.. ..+.......+..++|-++ ...+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 5555543322100 0000000 0111111222233333222 233333555555555555555666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 382 IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
.|+.++...+ -|..+||.|...++...+..+|+..|.+.++. .|+ +.....|..+|...|.+++|.+.|-..
T Consensus 452 cf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 452 CFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 6665555432 24556666666666666666666666665553 343 234444555566666666665555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.7e-06 Score=79.69 Aligned_cols=251 Identities=13% Similarity=0.095 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
+.|++.+|.-.|+...... +-+...|..|.......++-..|+..+.+..+.... |....-.|.-.|...|.-.+|+
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 5666788888887776533 556778888888888888888888888887776544 6677777777788888778888
Q ss_pred HHHHHHHhCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010807 276 SVLSRMKSNQCK--------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-SKEKPTLPTFNSMIINYGKARLQGKAEY 346 (500)
Q Consensus 276 ~~~~~m~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (500)
..|+.-.....+ ++...-.. ..+.....+....++|-++.. .+..+|...+..|...|.-.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888776543211 00000000 122333445555666655543 3434677778888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh---
Q 010807 347 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN--- 423 (500)
Q Consensus 347 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 423 (500)
.|+..+... +-|..+||-|...++...+.++|+..|.+.++..+.. +.+.-.|.-.|+..|.+++|...|-..+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 888888754 3457788888888888888888888888888754332 34555567788888888888887766542
Q ss_pred C------CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 424 M------GVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 424 ~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
. +-.++...|..|=.++.-.++.+.+.+..
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 1 11234566777766777777766554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.6e-05 Score=72.02 Aligned_cols=221 Identities=6% Similarity=-0.090 Sum_probs=141.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC--HH
Q 010807 231 AQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA--FD 307 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--~~ 307 (500)
...++.++|+.++.++++.... +..+|+..-.++...| ++++++..++++.+...+ +..+|+.-...+.+.|+ .+
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 3456677777777777765333 3445555555555556 567888888877776544 44455544444444454 25
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CC----HHHHH
Q 010807 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DN----VSRAR 380 (500)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~----~~~A~ 380 (500)
+++.+++++++...+ +..+|+...-++...|+++++++.+.++++.+ .-|...|+.....+.+. |. .++..
T Consensus 126 ~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 677777777766443 67778777777777888888888888887765 33555665555544443 22 24566
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------------
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMN----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------------ 444 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------------ 444 (500)
+...+++...+ -|...|+.+...+... ++..+|.+.+.+....+ ..+......|+..|+...
T Consensus 204 ~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 204 KYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 66667776543 3677888888777763 34466888887776654 335667777888776532
Q ss_pred ------CHHHHHHHHHHHH
Q 010807 445 ------MKELVQKLLKRME 457 (500)
Q Consensus 445 ------~~~~a~~~~~~m~ 457 (500)
..++|.++++.+.
T Consensus 282 ~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 2366777777773
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-05 Score=75.21 Aligned_cols=234 Identities=14% Similarity=0.191 Sum_probs=141.1
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccC-CCCCHHHHHHHHHHHH---------------------------
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRW-YIADTGIYSKLIAVMG--------------------------- 156 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~--------------------------- 156 (500)
+..+++..-..++.+...+-..+-+++++++.-... +..+...-|.+|-...
T Consensus 980 E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai 1059 (1666)
T KOG0985|consen 980 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAI 1059 (1666)
T ss_pred ccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHh
Confidence 334555555566666666666666777766643321 2222333333333333
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 157 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 236 (500)
Q Consensus 157 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 236 (500)
..+-+++|..+|.+. ..+....+.||. .-+.++.|.++-++.. ....|..+..+-.+.|.+
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie-------~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE-------NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH-------HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCch
Confidence 333334444444433 223333333333 3344555555544443 345788888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.+|++-|-.. -|...|..+++...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++..+.++++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 8888777443 267788888888999999999888888887776665543 57788888888888776665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 381 (500)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 381 (500)
..|+......+.+-|...+.++.|.-+|.... .|..|...+...|++..|..
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHH
Confidence 45677667777777777777777776665432 24444444455555554443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.7e-05 Score=66.75 Aligned_cols=191 Identities=13% Similarity=0.033 Sum_probs=105.7
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHcC
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA-LITAHLHT 193 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~ 193 (500)
+=..+--.|++.+|+.-|....+.+ +.+-.++..-...|.-.|+...|+.-++..++. +||-..-.. --..+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll-- 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL-- 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh--
Confidence 3344555688888888888887753 334445555566788888888888888888774 676432211 011222
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCCHH----HH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPNIV----TY------------NILLRACAQARNVDQVNALFKELHESILAPDIYT 257 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 257 (500)
+.|.++.|..-|+.+... .|+.. .+ ...+..+...|+...|+.....+++..+ -|...
T Consensus 118 --K~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 118 --KQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred --hcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 778888888888888753 23211 11 1122333344555555555555554322 24455
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
|..-..+|...|++..|+.-++...+..-. ++.++--+-..+...|+.+.++..+++.++
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 555555555555555555555444433222 333333344444555555555555555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-05 Score=83.59 Aligned_cols=241 Identities=12% Similarity=0.069 Sum_probs=191.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCK---PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 329 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (500)
....|-..|......++.++|.++.++.... ++. --...|.++++.-..-|.-+...++|++..+. -.....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4567888888999999999999999998754 111 12345667776666667888999999999774 22456788
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMN 408 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 408 (500)
.|...|.+.+..++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.+..+.-++ -......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 99999999999999999999998852 356788999999999999999999999988874322 1344555566666789
Q ss_pred CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCCCCCCcc
Q 010807 409 GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK--RFFLEALETFSSSLAGSQSGS 486 (500)
Q Consensus 409 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~~~~ 486 (500)
|+.+.+..+|+...... +--...|+.+|+.-.++|+.+.+..+|++....++.|-. ..|.-.|+.=-..|+.+.-..
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999988763 335678999999999999999999999999999998875 456666666666788888888
Q ss_pred chhhhhhhhhhc
Q 010807 487 AKTDLTRSLSTA 498 (500)
Q Consensus 487 ~~~~l~~~~~~~ 498 (500)
+++...++.+.-
T Consensus 1693 VKarA~EYv~s~ 1704 (1710)
T KOG1070|consen 1693 VKARAKEYVESI 1704 (1710)
T ss_pred HHHHHHHHHHHh
Confidence 887777776543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-08 Score=57.36 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
+.||..+||.||.+||+.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-08 Score=57.24 Aligned_cols=32 Identities=41% Similarity=0.796 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 215 RCKPNIVTYNILLRACAQARNVDQVNALFKEL 246 (500)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 246 (500)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.6e-05 Score=69.34 Aligned_cols=132 Identities=7% Similarity=0.021 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
.++.++|+.+++.+.+.. +-+..+|+....++...| ++++++..++++.+... .+..+|+..-..+.+.+ ....
T Consensus 50 ~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~--~~~~ 124 (320)
T PLN02789 50 DERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLG--PDAA 124 (320)
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcC--chhh
Confidence 345556666665555542 333344554444455544 34555555555554321 12223333222222110 0112
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGV 261 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 261 (500)
++++.+++++.+.. +.|..+|+....++...|+++++++.++++++.++. |...|+..
T Consensus 125 ~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 125 NKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred HHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence 34444444444322 334445555555555555555555555555544433 33344333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00021 Score=77.56 Aligned_cols=325 Identities=7% Similarity=-0.010 Sum_probs=193.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCC-C----CCC--HHHHHH
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMER-C----KPN--IVTYNI 225 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~----~~~--~~~~~~ 225 (500)
..+...|+++.+..+++.+.......+..........+. ..|+++++..++........ . .+. ......
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~----~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 457 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ----SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNAL 457 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH----HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence 345566778777777766532211112222222222333 45667888888776643110 0 111 122233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHH
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDI----YTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK-PDIITFNLL 296 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~l 296 (500)
+...+...|++++|...+++....-...+. ...+.+...+...|++++|...+.+.... |.. ....++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 445567899999999999988763222222 23455666778899999999999887643 111 112345566
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCC--CHHHHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHS----KEK--P-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTP--SFITYEC 365 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ 365 (500)
...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 77788899999999998876542 211 1 22345556666777899999999988875531 112 2344555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCC--CCCCHHH----HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHH
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLG--KDMKVST----LNAMLEAYCMNGLPTEADLLFENSHNMGVTPD---SSTYKLL 436 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l 436 (500)
+...+...|+.+.|.+.++...... ....... ....+..+...|+.+.|..++........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6677888999999999998875421 1111111 01122445568999999999877654321111 1123456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhcCCCC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQN----GIVPNK-RFFLEALETFSSSLAG 481 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~g~~ 481 (500)
..++...|+.++|..++++.... |..++. .+...+-.++...|+.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 77888999999999999988754 433322 2333344444455543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00046 Score=65.37 Aligned_cols=378 Identities=10% Similarity=0.069 Sum_probs=227.2
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN 184 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 184 (500)
...+.+....+++.+..+ ..+++.+.++.+... ++.....|..-|..-...++++..+.+|.+.+.. ..+...|.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHH
Confidence 445677788899999877 899999999999886 5667788999999999999999999999998875 34567777
Q ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHHHhCCCCC
Q 010807 185 ALITAHLHT-RDKAKALAKALGYFQKMKGMERCKP-NIVTYNILLRA---------CAQARNVDQVNALFKELHESILAP 253 (500)
Q Consensus 185 ~li~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~m~~~g~~p 253 (500)
..+...-+. +...|.-+.-.+.|+-....-|..+ ....|+..+.. +..+.+++...++|+++....+.-
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 777644321 1122222333344444433233222 33356655543 334446677888898887643221
Q ss_pred ------CHHHHHHHHHHH-------hhcCCHHHHHHHHHHHHh--CCCCCCHH---------------HHHHHHHH----
Q 010807 254 ------DIYTYNGVMDAY-------GKNGMIKEMESVLSRMKS--NQCKPDII---------------TFNLLIDS---- 299 (500)
Q Consensus 254 ------~~~~~~~ll~~~-------~~~g~~~~a~~~~~~m~~--~~~~~~~~---------------~~~~li~~---- 299 (500)
|-..|..-|+.. -+...+..|.++++++.. +|+..+.. .|..+|..
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111222212111 112234455555555432 12111111 12111111
Q ss_pred ---------------------------------------------HhccCC-------HHHHHHHHHHHHhCCCCCCHHH
Q 010807 300 ---------------------------------------------YGKRQA-------FDKMEQVFKSLMHSKEKPTLPT 327 (500)
Q Consensus 300 ---------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 327 (500)
+...|+ -+++..+++..+..-...+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 2333444443332211222223
Q ss_pred HHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 010807 328 FNSMIINYGKAR---LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLE 403 (500)
Q Consensus 328 ~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~ 403 (500)
|..+...--..- ..+.....++++...-..--..+|..+++.-.+...+..|..+|.++.+.+..+ ++.++++++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 322222111111 244455556655553222224567888888889999999999999999977666 7889999999
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCC
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPDSS-TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK--RFFLEALETFSSSLA 480 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~ 480 (500)
-||. ++..-|.++|+--... -+|.. --...+.-+.+.++-..+..+|++....++.|+. ..|..+|.-=..-|+
T Consensus 411 y~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 8886 6788999999875543 23433 3455677788889999999999999998777775 678888877666676
Q ss_pred CCCCccchhh
Q 010807 481 GSQSGSAKTD 490 (500)
Q Consensus 481 ~~~~~~~~~~ 490 (500)
......+..+
T Consensus 488 L~si~~lekR 497 (656)
T KOG1914|consen 488 LNSILKLEKR 497 (656)
T ss_pred HHHHHHHHHH
Confidence 6554444333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.3e-05 Score=73.15 Aligned_cols=294 Identities=13% Similarity=0.096 Sum_probs=166.8
Q ss_pred cccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GC--------RPDPSVYNALITAH 190 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~~~~~~li~~~ 190 (500)
...|+.+.|.+-.+.+. +..+|..|..+|.+..+.+-|.-.+..|... |. .|+...-...+-+
T Consensus 739 vtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA- 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA- 810 (1416)
T ss_pred EEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH-
Confidence 33477777776665554 3567999999999999999888887777542 21 2322211111111
Q ss_pred HcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 010807 191 LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 270 (500)
. ..|.+++|+.+|.+-+. |..|=..|...|.+++|.++-+.=.+..+ ..||......+-..++
T Consensus 811 i----eLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 I----ELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRD 873 (1416)
T ss_pred H----HHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhcc
Confidence 2 78999999999999874 44566677889999999998765332222 2456666666666778
Q ss_pred HHHHHHHHHHHH----------hCC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 271 IKEMESVLSRMK----------SNQ---------CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 271 ~~~a~~~~~~m~----------~~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
.+.|++.|++.. ... -..|...|.-........|+.+.|+.+|....+ |-.+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 888888876532 111 112444555555555667888888888876533 2233
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----------CCCCCCHHH----
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK----------LGKDMKVST---- 397 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----------~~~~~~~~~---- 397 (500)
+...|-.|+.++|.++-++ .-|......|.+.|.+.|++.+|..+|.+... +++ +...
T Consensus 945 VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nla 1016 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLA 1016 (1416)
T ss_pred eeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHH
Confidence 3333344444444443322 11333333444444444444444444443321 111 0111
Q ss_pred ---------------------HHHHHHHHHhcCChhhHHHHHHH--------HHhCCC--CCCHHHHHHHHHHHHHcCCH
Q 010807 398 ---------------------LNAMLEAYCMNGLPTEADLLFEN--------SHNMGV--TPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 398 ---------------------~~~li~~~~~~g~~~~A~~~~~~--------m~~~~~--~p~~~~~~~li~~~~~~g~~ 446 (500)
+..-+..|-+.|.+.+|+++--+ ++..++ ..|+...+.-...|....++
T Consensus 1017 l~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred hhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 12234456667777777665321 222222 33566666666666777777
Q ss_pred HHHHHHHHH
Q 010807 447 ELVQKLLKR 455 (500)
Q Consensus 447 ~~a~~~~~~ 455 (500)
++|..++..
T Consensus 1097 ekAV~lL~~ 1105 (1416)
T KOG3617|consen 1097 EKAVNLLCL 1105 (1416)
T ss_pred HHHHHHHHH
Confidence 776666543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-05 Score=75.71 Aligned_cols=205 Identities=11% Similarity=0.068 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..|-...|+.+|++.. .|.-.|..|+..|+.++|..+..+..+ -+||...|..+.+......-+++|.
T Consensus 410 slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 410 SLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHH
Confidence 6677888888888765 355677788888888888888877766 3567788888888777777778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
++.+..... .-..+.....+.+++.++.+.|+.-.+... ....+|-.+..+..+.++++.|...|.....-
T Consensus 478 Elsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL- 548 (777)
T KOG1128|consen 478 ELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL- 548 (777)
T ss_pred HHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc-
Confidence 887765432 111222223346888888888887666432 35677877888888888888888888777663
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 356 YTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 356 ~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.|| ...||.+-.+|.+.++-.+|...+.+..+.+. -+..+|...+....+.|.+++|++.+.++..
T Consensus 549 -~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 549 -EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred -CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 444 66788888888888888888888888888763 3567777788888888888888888887654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-05 Score=70.51 Aligned_cols=187 Identities=14% Similarity=0.016 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL--PTF 328 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 328 (500)
.....+..+...+.+.|++++|...|+++...... | ....+..+..++.+.|++++|+..++++.+..+.... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777777888888888888888888765322 1 1235666777888888888888888888775433222 245
Q ss_pred HHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 329 NSMIINYGKA--------RLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399 (500)
Q Consensus 329 ~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (500)
..+..++... |++++|...++.+.... |+. ..+..+..... ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 5555555544 56777777777777643 332 22221111100 000 00 01112
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNMGV--TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.+...|.+.|++.+|+..+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678899999999999999887621 223568889999999999999999998888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.8e-05 Score=78.35 Aligned_cols=270 Identities=14% Similarity=0.085 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHH
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 222 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (500)
.+...+..|+..+...+++++|.++.+...+. .|+...+-.+...+.. ..+...++.-+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~---q~~~~~~~~lv---------------- 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSL---SRRPLNDSNLL---------------- 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHH---hhcchhhhhhh----------------
Confidence 35677888888888889999998888876664 4544333322222211 22222222211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
.++.......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+.... |..+.|.+...|..
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae 162 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEE 162 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHH
Confidence 44455555556655555555555532 24457778888888888888888888888887744 77888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 382 (500)
. ++++|++++.+.... +...+++..+.++|..+.... +-+...+-.+
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i---------------- 209 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRI---------------- 209 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHH----------------
Confidence 8 888888888776542 556667778888888877753 1122222222
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CC
Q 010807 383 FDELSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-NG 460 (500)
Q Consensus 383 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g 460 (500)
.+.+... +..--..++-.+-..|-..+++++++.+++.+.+.. +-|.....-++..|. +.+.. ...|++..+ .|
T Consensus 210 ~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 210 ERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 2222211 112234555556667777777888888888877765 335666666766665 22222 233333332 25
Q ss_pred CCCCHHHHHHHHHHH
Q 010807 461 IVPNKRFFLEALETF 475 (500)
Q Consensus 461 ~~p~~~~~~~ll~~~ 475 (500)
+.-+...+...|.-|
T Consensus 286 l~~~~~~~~~~i~~f 300 (906)
T PRK14720 286 IGNNRKPVKDCIADF 300 (906)
T ss_pred cccCCccHHHHHHHH
Confidence 555544444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0001 Score=74.44 Aligned_cols=298 Identities=12% Similarity=0.152 Sum_probs=181.5
Q ss_pred cchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010807 109 SEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188 (500)
Q Consensus 109 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 188 (500)
.-++-.+.+.....+-+++|..+|++.. .+....+.+|. .-++.+.|.+.-++.- ....|..+..
T Consensus 1048 nyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlak 1112 (1666)
T KOG0985|consen 1048 NYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAK 1112 (1666)
T ss_pred cCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHH
Confidence 3344444444555567788888887743 34555555555 3466777777666543 4467888888
Q ss_pred HHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010807 189 AHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 268 (500)
Q Consensus 189 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 268 (500)
+-. +.|.+.+|++-|-+.. |+..|..+++...+.|.+++-.+.+.-.++..-+|... +.||-+|++.
T Consensus 1113 AQL----~~~~v~dAieSyikad-------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1113 AQL----QGGLVKDAIESYIKAD-------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred HHH----hcCchHHHHHHHHhcC-------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 877 7778888888876643 66788999999999999999999988877777666655 4688889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010807 269 GMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 348 (500)
Q Consensus 269 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (500)
+++.+.++++. .||......+.+-|...+.++.|.-+|..+ .-|..|...+...|+++.|.+.-
T Consensus 1180 ~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHh
Confidence 88877665542 467777777777777788888777666532 34555555566666666555443
Q ss_pred HHHH------------------------hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 349 QKMT------------------------AMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 349 ~~m~------------------------~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
++.. ...+.....-...++..|...|-+++-+.+++...... ......|+-|.-.
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAIL 1322 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHH
Confidence 3221 11111222333445555555555555555555433211 1123445555555
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
|.+- ++++..+-++-.-. ....-.+++++.+..-|.+..-++.+-.+
T Consensus 1323 Ysky-kp~km~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHhc-CHHHHHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5443 22333222222211 12234577888888888777776665443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0013 Score=65.16 Aligned_cols=225 Identities=11% Similarity=0.068 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCC------------------CCHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILA------------------PDIY 256 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~------------------p~~~ 256 (500)
..++++.|.+...+..+. +-..+...|..+.-.+...+++.+|+.+.+..... |.. --..
T Consensus 490 ~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~ 568 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALD 568 (799)
T ss_pred HHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHH
Confidence 778899999999998874 23667889999999999999999999999886543 210 0122
Q ss_pred HHHHHHHHHhhc-----------------------CCHHHHHHHHHHH--------HhCC-----------CCCC-----
Q 010807 257 TYNGVMDAYGKN-----------------------GMIKEMESVLSRM--------KSNQ-----------CKPD----- 289 (500)
Q Consensus 257 ~~~~ll~~~~~~-----------------------g~~~~a~~~~~~m--------~~~~-----------~~~~----- 289 (500)
|...++..+-.. ++..++.+....+ ...| ..|+
T Consensus 569 t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~ 648 (799)
T KOG4162|consen 569 TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYL 648 (799)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHH
Confidence 333333333210 0111111111110 0001 0111
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 290 -IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 290 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
...|......+.+.+..++|...+.+.... .......|......+...|.+++|.+.|....... +-++....++..
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 123345556677788888888777777654 34467788888888999999999999999888754 334778899999
Q ss_pred HHhccCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 369 MYGYCDNVSRARE--IFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 369 ~~~~~~~~~~A~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
++.+.|+..-|.. ++.++.+.++ -+...|-.+...+.+.|+.+.|.+.|....+.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999998877777 9999999874 47999999999999999999999999987654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-05 Score=69.47 Aligned_cols=189 Identities=13% Similarity=-0.011 Sum_probs=133.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILA-P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDI--IT 292 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~ 292 (500)
......+..+...+...|+++.|...|+++...... | ...++..+..++.+.|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 456778888999999999999999999999875432 1 1246778889999999999999999999876433111 24
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 010807 293 FNLLIDSYGKR--------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE 364 (500)
Q Consensus 293 ~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 364 (500)
+..+..++.+. |++++|.+.|+.+....+. +...+..+..... ... ... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 55555566554 7899999999999876433 3333322221111 000 000 1122
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+...|.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 466678899999999999999887532 224678889999999999999999999887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.4e-05 Score=66.28 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=67.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hccCC--HHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY-GYCDN--VSRA 379 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~~~--~~~A 379 (500)
.++.++++..++..++..+ .+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4455555555555555432 255566666666666666666666666665543 23455555555542 44444 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+++++..+.+.. +...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666665432 4556666666666666666666666666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.4e-05 Score=72.21 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
+.+......|.+|+.+++.+.++.. -...|..+...|+..|+++.|.++|.+.- .++..|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3344455666666666666655422 12234555566666666666666665431 244556666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 307 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE 385 (500)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 385 (500)
..|.++-.+.. |.......|-.-..-+-..|++.+|+++|-.+. .|+. -|.+|-+.|..+..+++.++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 66666655442 233334444444444555566666655553322 2322 34455555555555544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00029 Score=69.84 Aligned_cols=302 Identities=13% Similarity=0.122 Sum_probs=167.9
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAK 202 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~ 202 (500)
|-.++|+.+|+...+ |..|=..|-..|.+++|.++-+.=....++ .||......+- ..++++.
T Consensus 814 gMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Le----ar~Di~~ 876 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLE----ARRDIEA 876 (1416)
T ss_pred hhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHH----hhccHHH
Confidence 566777777777655 444556677788888888876553322222 22322222222 5566888
Q ss_pred HHHHHHHhhcC----------C--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 203 ALGYFQKMKGM----------E--------RCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 203 a~~~~~~~~~~----------~--------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
|+++|++.... . .-..|...|.-.....-..|+.+.|+.+|....+ |-.+++.
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI 947 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI 947 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence 88888764310 0 0022334444445555556777777777765542 4556666
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH-
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK- 343 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~- 343 (500)
.|-.|+.++|-++-++-. |...+-.|...|...|++.+|+.+|.+.. +|...|+.|-.++.-++
T Consensus 948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 777888888887766532 56666778888999999999998887653 33334443333322221
Q ss_pred --------------HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH--------HHH--CCCCCCHHHHH
Q 010807 344 --------------AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDE--------LSK--LGKDMKVSTLN 399 (500)
Q Consensus 344 --------------a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~--------~~~--~~~~~~~~~~~ 399 (500)
|..+|++ .|.. +..-+..|-+.|.+.+|+++--+ ++. .....|+...+
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~ 1084 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLR 1084 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHH
Confidence 2222221 1111 12234456667777777654221 111 22334666666
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHh--------------------------CCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHN--------------------------MGVTPDS----STYKLLYKAYTKANMKELV 449 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~--------------------------~~~~p~~----~~~~~li~~~~~~g~~~~a 449 (500)
.-...++...++++|..++-..++ .+-.|+. .....+...|.++|.+..|
T Consensus 1085 RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1085 RCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 666667777777777666533221 1112332 3455666778888888877
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 010807 450 QKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 450 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
-+-|-..-++ ...++++.++|+.+
T Consensus 1165 tKKfTQAGdK---------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1165 TKKFTQAGDK---------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHHHhhhhhH---------HHHHHHHHhcCCcc
Confidence 7655433211 33455555666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-05 Score=65.84 Aligned_cols=149 Identities=8% Similarity=0.093 Sum_probs=117.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
+..|...|+++.+....+.+... . ..+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45678888888875554333221 0 01223566778888888877765 66789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAY-CMNGL--PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
++|...|++..+... -+...+..+..++ ...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999764 3788888888874 67777 599999999999885 447788999999999999999999999
Q ss_pred HHHHHCC
Q 010807 454 KRMEQNG 460 (500)
Q Consensus 454 ~~m~~~g 460 (500)
+++.+..
T Consensus 168 ~~aL~l~ 174 (198)
T PRK10370 168 QKVLDLN 174 (198)
T ss_pred HHHHhhC
Confidence 9998763
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.9e-05 Score=63.78 Aligned_cols=158 Identities=8% Similarity=-0.032 Sum_probs=92.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010807 259 NGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 338 (500)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (500)
..+-..+...|+-+....+........ .-|.......+....+.|++..|+..|++.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 444455555666666655555543321 224444555666666666666666666666554 234666666666666666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLF 418 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 418 (500)
|+.+.|..-|.+..+.. .-+...++.+.-.+.-.|+++.|..++......+. -|..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666666532 22344556666666666666666666666665432 24555566666666666666666655
Q ss_pred HH
Q 010807 419 EN 420 (500)
Q Consensus 419 ~~ 420 (500)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 44
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00012 Score=71.47 Aligned_cols=284 Identities=15% Similarity=0.127 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010807 150 KLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229 (500)
Q Consensus 150 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (500)
+.|..|.+.|..-+|.+.-..-.. +..|......+..+++ +..-+++|-++|+++.. |+ ..+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali----k~elydkagdlfeki~d-----~d-----kale~ 683 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI----KGELYDKAGDLFEKIHD-----FD-----KALEC 683 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH----hhHHHHhhhhHHHHhhC-----HH-----HHHHH
Confidence 456667777777666554332211 2356666666666666 55567777777777653 11 12222
Q ss_pred HHHcCCHHHHHHHHHHHH----------------hCCCCCC--------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 230 CAQARNVDQVNALFKELH----------------ESILAPD--------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~----------------~~g~~p~--------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
|-+..-+.+|+++-+-.- ..| ..| .......+.+.....+|.+|+.+++.+....
T Consensus 684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk 762 (1636)
T KOG3616|consen 684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK 762 (1636)
T ss_pred HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc
Confidence 222222333333221110 000 000 0011122334445566677777777666542
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365 (500)
Q Consensus 286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 365 (500)
. -...|..+.+-|...|+++.|+++|.+. ..++-.|..|.+.|+|+.|..+-.+. .|.......|-.
T Consensus 763 ~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yia 829 (1636)
T KOG3616|consen 763 T--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIA 829 (1636)
T ss_pred c--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHH
Confidence 2 2334566667777777777777777543 12445566777777777777665443 233334445555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
-..-.-+.|++.+|.++|-.+.. |+ .-|..|-+.|..+..+++.++-... .-..|...+..-+-..|+
T Consensus 830 kaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccC
Confidence 55556666777777766543322 22 2356677777777777776653221 123466677778888999
Q ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 010807 446 KELVQKLLKRMEQN----GIVPNKRFFLEALETF 475 (500)
Q Consensus 446 ~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~ 475 (500)
...|.+.|-+..+. ++.-+...|....+..
T Consensus 898 lkaae~~flea~d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 898 LKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHH
Confidence 99999888666532 3334444454444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0006 Score=58.82 Aligned_cols=243 Identities=16% Similarity=0.081 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH-
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME- 275 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~- 275 (500)
.|.+..++..-...... +.+...---+-++|...|.+.....-. .. |-.|....+..+-.....-++.++-+
T Consensus 21 ~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred hhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 35555555544443321 122233333444555555543332221 11 11233333333333333334333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
++.+.+.......+......-...|++.|++++|++..... . +......=+..+.+..+.+-|...++.|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 33334443333333333334445677777777777766552 1 2222222334455666677777777777763
Q ss_pred CCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 356 YTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
-+..|.+.|..++.+ .+.+.+|.-+|++|.+. .+|+..+.|....++...|++++|..++++..... ..++.
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpe 242 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPE 242 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHH
Confidence 355566655555543 34577777777777764 35677777777777777778888887777777665 34566
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 010807 432 TYKLLYKAYTKANMKEL-VQKLLKRME 457 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~-a~~~~~~m~ 457 (500)
+...++-.-...|.-.+ ..+.+....
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 66666665555665433 333444444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.9e-05 Score=64.10 Aligned_cols=157 Identities=13% Similarity=0.028 Sum_probs=98.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+-..+...|+-+....+....... ...|.......+....+.|++..|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555556666666655554433 22345555556666667777777777777766543 56677777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
|+++.|..-|.+..+... -++..+|.|...|.-.|+.+.|..++......+ .-|...-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777776666432 245666666666667777777777777666553 225556666666666777777776665
Q ss_pred H
Q 010807 454 K 454 (500)
Q Consensus 454 ~ 454 (500)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00069 Score=63.58 Aligned_cols=212 Identities=11% Similarity=0.026 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 010807 196 KAKALAKALGYFQKMKGMER-CKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 274 (500)
...++.++...-++++...+ -.|+...+...+.+......-..+..++....+. .-...-|... ..+...|++++|
T Consensus 249 p~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A 325 (484)
T COG4783 249 PEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEA 325 (484)
T ss_pred chhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchH
Confidence 45667777777777765332 2455666666666555544444444444333331 1122223333 335577889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+..++.+...- +-|...+....+.+.+.++.++|.+.++.+....+. .....-.+..+|.+.|++.+|..+++.....
T Consensus 326 ~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 326 LKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 99999988763 336666777888899999999999999998885332 2666777888899999999999999888776
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
. +-|...|..|.++|...|+..++..... ..|...|+++.|+..+....+.. +++..+
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~-~~~~~~ 461 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV-KLGFPD 461 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc-cCCcHH
Confidence 4 6678899999999999998887765543 34556788899988888877653 334333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.3e-05 Score=62.72 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.+. .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 3445555666666666666666666543 33556666666666666666666666666666542 355666666666666
Q ss_pred cCChhhHHHHHHHHHhC
Q 010807 408 NGLPTEADLLFENSHNM 424 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~ 424 (500)
.|++++|+..|+..+..
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00057 Score=64.75 Aligned_cols=325 Identities=13% Similarity=0.068 Sum_probs=210.7
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchH
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKA 197 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~ 197 (500)
....|+|+.|+..|....... ++|...|..-..+|.+.|++++|++==.+-.+ +.|+ ..-|.-.-.++. ..
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~----~l 83 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALF----GL 83 (539)
T ss_pred hcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHH----hc
Confidence 345699999999999988875 67889999999999999999999876666655 3566 346777777777 78
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHhCC---CCCCHHHHHHHHHHHhhc
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALF------KELHESI---LAPDIYTYNGVMDAYGKN 268 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~------~~m~~~g---~~p~~~~~~~ll~~~~~~ 268 (500)
|++++|+.-|.+-.+.+ +.|...++-+..++..... +.+.| ..+.... .......|..++..+-+.
T Consensus 84 g~~~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred ccHHHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 89999999999987643 5667778888877721110 11111 1111000 000112233333332211
Q ss_pred ----------CCHHHHHHHHHHH-----HhCC-------CCC----------------------CHHHHHHHHHHHhccC
Q 010807 269 ----------GMIKEMESVLSRM-----KSNQ-------CKP----------------------DIITFNLLIDSYGKRQ 304 (500)
Q Consensus 269 ----------g~~~~a~~~~~~m-----~~~~-------~~~----------------------~~~~~~~li~~~~~~~ 304 (500)
..+..+.-++... ...| ..| -..-...+.++..+..
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk 238 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKK 238 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111111111110 0000 111 1112456777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--C----HHHHHHHHHHHhccCCHHH
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--S----FITYECIITMYGYCDNVSR 378 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~----~~~~~~li~~~~~~~~~~~ 378 (500)
+++.|++.+...++.. -+..-++....+|...|.+.++...-....+.|-.. + ...+..+..+|.+.++++.
T Consensus 239 ~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred hHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 9999999999888754 456667777788888998888877777766655221 1 1122334456777788899
Q ss_pred HHHHHHHHHHCCCCCCHHH-------------------------HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 379 AREIFDELSKLGKDMKVST-------------------------LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
|+..|.+.......|+... ...=...+.+.|++..|+..|.+++... +-|...|
T Consensus 317 ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lY 395 (539)
T KOG0548|consen 317 AIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLY 395 (539)
T ss_pred HHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHH
Confidence 9988887665333332211 1112455678899999999999999886 5678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
....-+|.+.|.+..|+.-.+...+.
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999999999999877766655
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00084 Score=60.23 Aligned_cols=196 Identities=11% Similarity=0.122 Sum_probs=135.2
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
++.+-...++..|+.+++.-...+. .....+---+...+...|++++|...|.-+.+.. .++...+..|..++.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~F---- 102 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKF---- 102 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHH----
Confidence 6677777899999999988765431 1111223335567778999999999999887743 566777777766666
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
-.|.+.+|..+-.+..+ +......|....-+.++-++...+.+.+.+. ..---+|.......-.+++|+
T Consensus 103 yLg~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHH
Confidence 78889999988766543 4555666777778889988888888777642 122233444444455689999
Q ss_pred HHHHHHHhCCCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 276 SVLSRMKSNQCKPDIITFNL-LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
+++.+.... .|+-...|. +.-+|.+..-++-+.++++-.++. ++.++..-|..
T Consensus 172 dvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLk 225 (557)
T KOG3785|consen 172 DVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLK 225 (557)
T ss_pred HHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHH
Confidence 999999876 344444443 344678888899999988887765 33344444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0003 Score=71.83 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
++..+-.|..+..+.|.+++|..+++...+..+. +......+...+.+.+++++|+..+++....... +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 3445555555555555555555555555443222 3334444455555555555555555555544322 3444444445
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
++.+.|++++|+.+|+++...+. -+..++..+..++...|+.++|...|+...+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555554211 2344555555555555555555555555544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00034 Score=71.44 Aligned_cols=182 Identities=9% Similarity=-0.011 Sum_probs=120.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 251 LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS 330 (500)
Q Consensus 251 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (500)
...+...+..|.....+.|.+++|+.+++...+.... +......+..++.+.+++++|...+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 3346777777888888888888888888888776332 4555667777788888888888888888775433 5666777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.. .+...-|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 7777888888888888888888733 3346777778888888888888888888777642 234455554432 3
Q ss_pred hhhHHHHHHHHHhCC----CCCCHHHHHHHHHHHHH
Q 010807 411 PTEADLLFENSHNMG----VTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~ 442 (500)
...-..+++.+.-.+ ...........|.-|.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 333444555544332 22233444445554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00057 Score=58.97 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=52.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----c
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG----K 302 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~ 302 (500)
...|++.|++++|++...... +......=+..+.+..+.+-|.+.+++|.+.. +..|.+-|..++. .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 334555555555555544311 22222222333344444555555555554431 2333333333332 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.+.+..|.-+|++|-++ ..|+..+.+-...++...|++++|..+++.....
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33445555555555443 3444444444555555555555555555554443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=7e-05 Score=60.76 Aligned_cols=96 Identities=8% Similarity=-0.053 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
+..+...+...|++++|...|+......+ .+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 44455666667777777777777666532 256667777777777777777777777777653 3456667777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 010807 373 CDNVSRAREIFDELSKLG 390 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~ 390 (500)
.|+.++|...|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777776643
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00051 Score=71.03 Aligned_cols=240 Identities=10% Similarity=0.078 Sum_probs=151.7
Q ss_pred ccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010807 106 VVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA 185 (500)
Q Consensus 106 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 185 (500)
....+....++..+...+++++|.++.+...+.. +.....|-.+...+.+.++.+++..+ .+... .++..-|
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~-- 99 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKW-- 99 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccch--
Confidence 3445555678888888899999999999777653 33334444444477888887777666 33321 2222222
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 186 LITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265 (500)
Q Consensus 186 li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 265 (500)
.-...+...|.. ...+...+-.+..+|-+.|+.++|..+|+++.+..+. |..+.|.+...|
T Consensus 100 ---------------~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ 160 (906)
T PRK14720 100 ---------------AIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSY 160 (906)
T ss_pred ---------------hHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHH
Confidence 222222223332 1334457778899999999999999999999998754 889999999999
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 010807 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAE 345 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 345 (500)
+.. ++++|.+++.+.... |...+++..+.++|.++....+. +...+..+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~------------- 210 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE------------- 210 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHH-------------
Confidence 999 999999998887654 55566778888888877664322 222222222
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010807 346 YVFQKMTAM-KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406 (500)
Q Consensus 346 ~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 406 (500)
+.+... |..--..++-.+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 211 ---~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 ---RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222211 11122334444555566666777777777777665432 4555556666655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0011 Score=59.19 Aligned_cols=281 Identities=10% Similarity=0.033 Sum_probs=198.5
Q ss_pred hHHHHHHHhhh--ccCcchHHHHHHH---HcccCCHHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 010807 95 PLVRTLNKYVK--VVRSEHCFLLFEE---LGKSDKWLQCLEVFRWMQKQRWYIADTG-IYSKLIAVMGKKGQTRLAMWLF 168 (500)
Q Consensus 95 ~~~~~l~~~~~--~~~~~~~~~l~~~---l~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 168 (500)
.+.+.+..|-. .+++..+..+++. +-..|+-..|+.-|..+.+. +||-. .--.-..++.+.|.++.|..-|
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---KpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---KPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---CccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 45555555543 3667777766654 33357777788888888774 56642 2333456788999999999999
Q ss_pred HHHHHcCCCCCHH--------------HHH--HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 010807 169 SEMRNSGCRPDPS--------------VYN--ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 232 (500)
Q Consensus 169 ~~m~~~g~~p~~~--------------~~~--~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (500)
+.+++.. |+.. .|+ ..+..+. ..|+...|+.+...+.+.. +-|...|..-..+|..
T Consensus 130 ~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~----~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 130 DQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSAS----GSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHh----cCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHh
Confidence 9998863 3211 111 1111222 5678899999999998643 6788889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHH---------HHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIIT----FNLL---------IDS 299 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------i~~ 299 (500)
.|++..|+.=++...+..-. ++.++.-+-..+...|+.+.++....+..+. .||.-. |..+ +..
T Consensus 202 ~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~ 278 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQ 278 (504)
T ss_pred cCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888777665433 6677777788889999999999999998876 344322 2211 122
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLP---TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
....++|.++++-.+.+++..+..... .+..+-.++...+++.+|++...+.+... +.|+.++.--..+|.-..++
T Consensus 279 ~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHH
Confidence 345678888888888877765442333 34455667777899999999998888753 33478888888899989999
Q ss_pred HHHHHHHHHHHHCC
Q 010807 377 SRAREIFDELSKLG 390 (500)
Q Consensus 377 ~~A~~~~~~~~~~~ 390 (500)
+.|+.-|+...+.+
T Consensus 358 D~AI~dye~A~e~n 371 (504)
T KOG0624|consen 358 DDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888865
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0063 Score=61.44 Aligned_cols=196 Identities=14% Similarity=0.113 Sum_probs=103.9
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLI 152 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 152 (500)
.+.+..|...+..+++..|+. ....++..+.. .+.|+.++|..+++.....+ ..|..+...+-
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl--------------~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~ 84 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSL--------------FRLGKGDEALKLLEALYGLK--GTDDLTLQFLQ 84 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH--------------HHhcCchhHHHHHhhhccCC--CCchHHHHHHH
Confidence 456678888888888877664 45555544332 13355555555555544433 23566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHH------------------------
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ------------------------ 208 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~------------------------ 208 (500)
.+|...|+.++|..+|+..... -|+......+..+|++..+-...-..|++++.
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~ 162 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN 162 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence 6666666666666666666553 45555555555555532221222222344443
Q ss_pred ----------------HhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 010807 209 ----------------KMKGMERCKPNIVTYNILLRACAQARNVDQVNALF-KELHESILAPDIYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 209 ----------------~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 271 (500)
.+.+..|..-+..-.-.-.......|++++|..++ ....+.-...+...-+.-+..+...+++
T Consensus 163 ~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 163 ELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 33322211111111112222334456667777766 3333333333444445666677777777
Q ss_pred HHHHHHHHHHHhCCCC
Q 010807 272 KEMESVLSRMKSNQCK 287 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~ 287 (500)
.+..++-.++...|..
T Consensus 243 ~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 243 QELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 7777777777776543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.1e-05 Score=60.63 Aligned_cols=97 Identities=11% Similarity=-0.040 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
.....+...+...|++++|.+.|+.+...+ +.+...|..+..++...|++++|..+++.....+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555556666666666666655543 2245556666666666666666666666655543 33455555555666
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 010807 441 TKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (500)
...|++++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666655543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0019 Score=55.41 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=123.9
Q ss_pred HcCCHHHHHHHHHHHHh---CC-CCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 232 QARNVDQVNALFKELHE---SI-LAPDIYT-YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
...+.++..+++.++.. .| ..++..+ |..++-+....|+.+.|...++.+...= +-+..+-..-.--+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 34567888888887753 33 4555533 5566666777888888888888877652 21222211111223446888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 307 DKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 386 (500)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 386 (500)
++|+++++.+++.. +.|..++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888888765 336666665555666667666777777666664 4667888888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhC
Q 010807 387 SKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNM 424 (500)
Q Consensus 387 ~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 424 (500)
.-.. +.++..+..+...+...| +..-|.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7754 345566666666654444 455677777777764
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0001 Score=59.35 Aligned_cols=106 Identities=12% Similarity=0.069 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445556666666777777777777766643 3356666667777777777777777777766654 3356666667777
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
|...|++++|...|+...+. .|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 77777777777777776664 34444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.7e-06 Score=48.61 Aligned_cols=33 Identities=39% Similarity=0.610 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPD 254 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~ 254 (500)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777766
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.2e-06 Score=48.45 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 432 TYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.4e-06 Score=48.03 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVP 463 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 463 (500)
.+|+.++.+|.+.|+++.|..+|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666677777777777777777776666665
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.001 Score=67.55 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHH
Q 010807 124 KWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKA 203 (500)
Q Consensus 124 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a 203 (500)
+...|.+.|+...+.+ ..++..+......|++..+++.|..+.-..-+. -+.-...++..-.+.... ..++..+|
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyL--ea~n~h~a 581 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYL--EAHNLHGA 581 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhcccccc--CccchhhH
Confidence 3455666666665553 445566666777777777777776662222111 011122222222222222 56677788
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhhcCCHHHHHHHHHHH
Q 010807 204 LGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG--VMDAYGKNGMIKEMESVLSRM 281 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~m 281 (500)
+..|+...+.+ +.|...|..++.+|...|.+..|.++|...... .|+ .+|.. ....-+..|.+++++..+...
T Consensus 582 V~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 582 VCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888777533 667888999999999999999999999877654 332 22222 223345678888888888776
Q ss_pred Hh
Q 010807 282 KS 283 (500)
Q Consensus 282 ~~ 283 (500)
..
T Consensus 657 i~ 658 (1238)
T KOG1127|consen 657 IY 658 (1238)
T ss_pred HH
Confidence 54
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0042 Score=53.39 Aligned_cols=189 Identities=11% Similarity=0.113 Sum_probs=123.5
Q ss_pred CCHHHHHHHHHHHHHcc---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHH
Q 010807 123 DKWLQCLEVFRWMQKQR---WYIADT-GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~---~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 198 (500)
.+.++.++++..+.... -..++. ..|..++-+....|+.+.|..+++.+...- |...-...+-..... ..|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lE---a~~ 100 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLE---ATG 100 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHH---Hhh
Confidence 44566666666654321 134454 347777778888888889999888887652 443322222222222 567
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
.+++|+++|+.+.+.+ +-|.++|-.-+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+
T Consensus 101 ~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred chhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 7888888888888643 566777776666666777777888877777765 3448888888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhCC
Q 010807 279 SRMKSNQCKPDIITFNLLIDSYGK---RQAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 279 ~~m~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~ 320 (500)
+++.-..+. +...+..+.+.+.- ..++..+.++|.+.++..
T Consensus 178 EE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 178 EELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 887765322 44444555554433 335566777777776643
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.10 E-value=7e-05 Score=70.96 Aligned_cols=124 Identities=17% Similarity=0.150 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKL--GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
+.+.+...+..+++.+....+++.+..++.+.+.. ....-..|..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777777888888888888888888777763 2222344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 010807 433 YKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSS 478 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 478 (500)
++.|+..+.+.|++..|.++.-+|...+...+..|+.-.+-+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777777777776666555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=61.44 Aligned_cols=230 Identities=13% Similarity=0.004 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCcchHHH
Q 010807 125 WLQCLEVFRWMQK---QRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG--CRPDPSVYNALITAHLHTRDKAKA 199 (500)
Q Consensus 125 ~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~ 199 (500)
.....++|+.+.. .++.+| .. ++..=.-..++..+...-+.|+..+ -.|+...+...+.+..... .
T Consensus 219 p~gM~~ff~rl~~~~~~~~~~p-~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~----~ 289 (484)
T COG4783 219 PQGMPEFFERLADQLRYGGQPP-EY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEAL----P 289 (484)
T ss_pred chhHHHHHHHHHHHHhcCCCCC-hH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccc----c
Confidence 3455678888874 332232 22 2222223345556666666665432 2456666666666554221 1
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLS 279 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 279 (500)
-..+-.++.+..+ . .-...-|...+ .+...|++++|+..++.+++.-+. |..........+.+.++.++|.+.++
T Consensus 290 ~~~~~~~~~~~~~-~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~ 364 (484)
T COG4783 290 NQQAADLLAKRSK-R--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLK 364 (484)
T ss_pred ccchHHHHHHHhC-c--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1122222222221 1 22233444444 456789999999999998876433 66666777788999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC
Q 010807 280 RMKSNQCKPD-IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP 358 (500)
Q Consensus 280 ~m~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 358 (500)
++... .|+ ....-.+..+|.+.|++.+|+.+++...... +.|+..|..|..+|...|+..++..-..+...
T Consensus 365 kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~----- 436 (484)
T COG4783 365 KALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYA----- 436 (484)
T ss_pred HHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH-----
Confidence 99887 444 5666778889999999999999999988774 44899999999999999999998888777654
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
..|+++.|...+....+.
T Consensus 437 -------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 437 -------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -------------hCCCHHHHHHHHHHHHHh
Confidence 358888888888777764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.5e-06 Score=48.00 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP 178 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 178 (500)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999999987
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00047 Score=56.14 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=55.1
Q ss_pred cCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChh
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPS---FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPT 412 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~ 412 (500)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......++. ...-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555432 111 122223334455556666666666655554422211 12333455555566666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
+|+..++..... ......+......+...|++++|...|++
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666443222 12233444455556666666666665554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00055 Score=64.70 Aligned_cols=120 Identities=14% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
.|+..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++.+..+.. +-+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444555555555555555442 332 2234444444555555555555555432 224444444455555555
Q ss_pred ChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 410 LPTEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
+++.|+.+.+++... .|+ ..+|..|..+|.+.|+++.|+..++.|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555554 232 335555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00065 Score=55.29 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=77.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT--LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECII 367 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li 367 (500)
.|..++..+ ..++...+...++.+........ ....-.+...+...|++++|...|+........++ ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 36677777777777766533321 22333344666677777777777777777542222 12334456
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
..+...|++++|+..++...... .....+......|.+.|++++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777778888877776644332 34556667777778888888888777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00042 Score=65.48 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
|+..+...++++.|+.+|+++.+.. |+ ....+...+...++-.+|.+++.+...... .+......-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 3444444455555555555555442 22 222344444444455555555555443321 134444444445555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 306 FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
++.|+++.+++.... +.+-.+|..|..+|...|+++.|+..++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555531 113345555555555555555555555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00024 Score=67.44 Aligned_cols=124 Identities=14% Similarity=0.021 Sum_probs=89.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 250 ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327 (500)
Q Consensus 250 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (500)
+...+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777777777777788888887777655 2212233445888888888888888888888777888888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887777766666666666666665554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00053 Score=50.97 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 225 ILLRACAQARNVDQVNALFKELHESIL-APDIYTYNGVMDAYGKNG--------MIKEMESVLSRMKSNQCKPDIITFNL 295 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~~~~~~ 295 (500)
..|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555556777777777777777777 677777777776665532 22345555555655556666666665
Q ss_pred HHHHHh
Q 010807 296 LIDSYG 301 (500)
Q Consensus 296 li~~~~ 301 (500)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0009 Score=61.08 Aligned_cols=144 Identities=19% Similarity=0.152 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555566666555666666666666432 2233333333333 22245555566666666553 334566666666666
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 406 CMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
...|+.+.|..+|++.+.. +.++. ..|...+..=.+.|+.+.+.++.+++.+. .|+...+..++..|
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 6666666666666666554 22221 35666666666666666666666666643 33333333344433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.057 Score=54.92 Aligned_cols=222 Identities=10% Similarity=0.094 Sum_probs=153.2
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAV--MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 198 (500)
..++|..|++..+.+.++. |+. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|- ..+
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~----d~~ 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR----DLG 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH----HHh
Confidence 4588999999999998874 232 34444444 45889999999999988766544 8888888888887 889
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---------
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--------- 269 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--------- 269 (500)
..++|..+|++.... .|+......+..+|.+.+++.+-.++--+|.+. ++-+.+.|=++++.+.+.-
T Consensus 92 ~~d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccc
Confidence 999999999999863 677778888888999998887655554444443 2224444444454443321
Q ss_pred -CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010807 270 -MIKEMESVLSRMKSNQ-CKPDIITFNLLIDSYGKRQAFDKMEQVFK-SLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346 (500)
Q Consensus 270 -~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (500)
-..-|.+.++.+.+.+ ..-+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..+
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234666667766654 22222223333445567788999999994 33333334455555677788888999999999
Q ss_pred HHHHHHhCC
Q 010807 347 VFQKMTAMK 355 (500)
Q Consensus 347 ~~~~m~~~~ 355 (500)
+-.++...|
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 999998876
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0008 Score=56.63 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 217 KPNIVTYNILLRACAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
..+-.+|..++..|.+. |.++-....+..|.+-|+.-|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 44555666666666543 5566666667777777777777777777766543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.9e-05 Score=44.02 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESI 250 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 250 (500)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0007 Score=50.36 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCD--------NVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 455555555554444321 1223344444555444555555555554
Q ss_pred HHHH
Q 010807 403 EAYC 406 (500)
Q Consensus 403 ~~~~ 406 (500)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 4443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0099 Score=60.83 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
.+...|+..|-+....+ +--...|..|...|+...+...|.+.|+...+.... +......+.+.|++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 34667777777666432 223567899999999988999999999998776443 667788899999999999999998
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 010807 278 LSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356 (500)
Q Consensus 278 ~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 356 (500)
.-..-+.... .-..-|....-.|.+.++...|+.-|+...+..+. |...|..++.+|...|++..|..+|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4433332111 01112333455678889999999999998886444 8889999999999999999999999888774
Q ss_pred CCCHHHHHHH--HHHHhccCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 357 TPSFITYECI--ITMYGYCDNVSRAREIFDELSKLG------KDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 357 ~~~~~~~~~l--i~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
.|+. +|... ...-+..|++.+|...+..+.... ..--..++-.+...+...|-..+|..++++
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 4543 23222 223456789999998888766411 011123343444444444555555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.8e-05 Score=43.54 Aligned_cols=30 Identities=40% Similarity=0.526 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGC 176 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 176 (500)
+|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 689999999999999999999999988764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00082 Score=49.59 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=49.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN 444 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 444 (500)
.+...+...|++++|..+++.+.+... .+...+..+..++...|++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344445555666666666655555432 223455555555556666666666666555443 223345555555666666
Q ss_pred CHHHHHHHHHHHH
Q 010807 445 MKELVQKLLKRME 457 (500)
Q Consensus 445 ~~~~a~~~~~~m~ 457 (500)
+++.|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.002 Score=50.20 Aligned_cols=58 Identities=12% Similarity=-0.032 Sum_probs=22.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+..++.+.|+++.|...|+.+...... ....++..+..++.+.|++++|...++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 444444444444444444444332111 0122333334444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0015 Score=50.96 Aligned_cols=100 Identities=14% Similarity=0.016 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CCHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT--PDSSTYKLL 436 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l 436 (500)
.++..++..+.+.|++++|.+.|..+...... .....+..+..++.+.|++++|...|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35667778888899999999999999875421 12456777899999999999999999998875311 125668888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
..++.+.|+.++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999999999773
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0029 Score=53.25 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
....+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+.+....... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 455677788888888999999998888876543332 356777788888888888888888888775332 45566666
Q ss_pred HHHHhccCCHHHHH
Q 010807 297 IDSYGKRQAFDKME 310 (500)
Q Consensus 297 i~~~~~~~~~~~a~ 310 (500)
..+|...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777766654443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=53.44 Aligned_cols=81 Identities=20% Similarity=0.214 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 373 CDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.++++ ...+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777888888877775431 2344555577788888888888888877 2221 1223444455677788888888888
Q ss_pred HHHH
Q 010807 452 LLKR 455 (500)
Q Consensus 452 ~~~~ 455 (500)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=48.82 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=34.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
+...+...|++++|..++++..+.... +...+..+...+...|++++|.+.++........ +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 333344444444444444444332211 2233333333444444444444444443333211 22233333334444444
Q ss_pred HHHHHHHHHHH
Q 010807 306 FDKMEQVFKSL 316 (500)
Q Consensus 306 ~~~a~~~~~~~ 316 (500)
++.|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00078 Score=56.70 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 253 PDIYTYNGVMDAYGK-----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT 327 (500)
Q Consensus 253 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 327 (500)
-|..+|..++..|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+-+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 377777777777764 57888888999999999999999999999999876 3322 11111111
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
..-| -.+.+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12345577777777777777777777777777776654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0019 Score=61.14 Aligned_cols=102 Identities=11% Similarity=-0.052 Sum_probs=77.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (500)
...+...|++++|...|.++++.. +-+...|..+..+|...|++++|+..++.+..... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 455667788888988888888764 34577788888888888899999888888888653 3577788888888888888
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 412 TEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
++|+..|++.+.. .|+...+..++
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8888888888875 45544444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.007 Score=50.88 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+...... -+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3455555566666666666666666655322221 24555556666666666666666666555432 23445555555
Q ss_pred HHHhcCChhhHH
Q 010807 404 AYCMNGLPTEAD 415 (500)
Q Consensus 404 ~~~~~g~~~~A~ 415 (500)
+|...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 555555544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.008 Score=48.36 Aligned_cols=91 Identities=11% Similarity=-0.007 Sum_probs=47.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+..-+...|++++|..+|+-+....+ -+..-|-.|..++-..|++.+|+..|....... +-|+..+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 33334445555555555555554432 234445555555555555555555555555544 2344555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 010807 446 KELVQKLLKRMEQ 458 (500)
Q Consensus 446 ~~~a~~~~~~m~~ 458 (500)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.004 Score=59.06 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=74.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
...+...|+++.|++.|++.++.... +...|..+..+|...|++++|...++.+.... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 44566778999999999988876443 67788888888888999999999998888764 34577788888888889999
Q ss_pred HHHHHHHHHHHHCC
Q 010807 377 SRAREIFDELSKLG 390 (500)
Q Consensus 377 ~~A~~~~~~~~~~~ 390 (500)
++|...|+...+.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999998888865
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0029 Score=50.82 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
....+...+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|.......+. |...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3444555556667777777777666655433 4455555666666666666666666666665543 5556666666666
Q ss_pred ccCCHHHHHHHHHHHHh
Q 010807 302 KRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~ 318 (500)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0035 Score=52.47 Aligned_cols=94 Identities=13% Similarity=-0.023 Sum_probs=46.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
.|..+...+...|++++|...|+........+ ...+|..+...|...|++++|+..+++..... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444445555555555555555554432111 12345555555666666666666665555432 1123334444444
Q ss_pred HH-------HcCCHHHHHHHHHHH
Q 010807 440 YT-------KANMKELVQKLLKRM 456 (500)
Q Consensus 440 ~~-------~~g~~~~a~~~~~~m 456 (500)
+. ..|+++.|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 44 566666555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.062 Score=47.82 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=37.7
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGI---YSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
......+.|++++|++.|+.+.... +.+... .-.++.++.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444445678888888888877753 222222 234566777788888888888887765
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0031 Score=57.55 Aligned_cols=129 Identities=9% Similarity=0.069 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
+|..+++..-+.+..+.|..+|.+..+.+. ...+....+++.. ...++.+.|.++|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344444444444444444444444443211 1122222222221 1123444455555544443 233444444444444
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPS---FITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
...++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555544433 1111 12445555554555555555555554444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0077 Score=55.20 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-----CCHH-HH
Q 010807 366 IITMYGYC-DNVSRAREIFDELSK----LGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-----PDSS-TY 433 (500)
Q Consensus 366 li~~~~~~-~~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~ 433 (500)
+...|... |++++|.+.|++..+ .+.+ .-...+..+...+.+.|++++|.++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445555 666666666665544 1200 01234455566677777777777777766543211 1121 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHH
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQN--GIVPNK--RFFLEALETF 475 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~--~~~~~ll~~~ 475 (500)
...+-.+...||...|.+.+++.... ++..+. .+...+|.+|
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 33344555667777777777776643 343332 3345555555
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0038 Score=52.25 Aligned_cols=61 Identities=10% Similarity=-0.051 Sum_probs=27.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP--TLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...++....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444455555555555444322111 122444444455555555555555544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00027 Score=51.32 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=3.2
Q ss_pred ccCCHHHHHH
Q 010807 302 KRQAFDKMEQ 311 (500)
Q Consensus 302 ~~~~~~~a~~ 311 (500)
+.|++++|++
T Consensus 70 ~l~~y~eAi~ 79 (84)
T PF12895_consen 70 KLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHH
T ss_pred HhCCHHHHHH
Confidence 3333333333
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0047 Score=54.61 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=50.9
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKA 344 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 344 (500)
..+.+++++|+..|.+.++.... |.+.|..=..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 44555666666666666555332 4555555555666666666665555555442111 234555666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHH
Q 010807 345 EYVFQKMTAMKYTPSFITY 363 (500)
Q Consensus 345 ~~~~~~m~~~~~~~~~~~~ 363 (500)
.+.|++.++ +.|+..+|
T Consensus 169 ~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHhhhc--cCCCcHHH
Confidence 666555555 34444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.014 Score=53.52 Aligned_cols=210 Identities=13% Similarity=0.162 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
.|......|...|++++|.+.|.+....-...+.. +. ....+.+|-.++.+... .--+..|...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~-~~-----------Aa~~~~~Aa~~~k~~~~----~~Ai~~~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK-FE-----------AAKAYEEAANCYKKGDP----DEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H-HH-----------HHHHHHHHHHHHHHTTH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH-HH-----------HHHHHHHHHHHHHhhCH----HHHHHHHHHH
Confidence 45666667777788888888887764321111100 00 11223334444433310 1112345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN-GMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSY 300 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~ 300 (500)
+..|...|++..|-+++..+- ..|-.. |++++|++.|++..+. |.. .-..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 567777777777777665543 345555 6777777777765432 211 0123455666677
Q ss_pred hccCCHHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCC--HHHHHHHHHHH
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKP-----TL-PTFNSMIINYGKARLQGKAEYVFQKMTAMK--YTPS--FITYECIITMY 370 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~--~~~~~~li~~~ 370 (500)
.+.|++++|+++|+++....... +. ..|...+-++...||...|...++...... +..+ ......|+.+|
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 77788888888887776542211 11 123333445555677777777777765432 2222 33445555555
Q ss_pred hc--cCCHHHHHHHHHHHH
Q 010807 371 GY--CDNVSRAREIFDELS 387 (500)
Q Consensus 371 ~~--~~~~~~A~~~~~~~~ 387 (500)
-. ...++.+..-|+.+.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 43 223444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0043 Score=54.81 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=74.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
.-..+.+++++|+..|...++.. +-|.+.|..=..+|.+.|+++.|++-.+..+..+.. -..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 34567788888888888888753 445667777788888888888888888777775422 3567888888888888888
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYK 438 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~ 438 (500)
+|++.|++.++. .|+-.+|..=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 888888887764 666666554333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.11 Score=46.14 Aligned_cols=175 Identities=13% Similarity=0.046 Sum_probs=91.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITF---NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK-- 337 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 337 (500)
..+.+.|++++|.+.|+++...-..+ .... -.+..+|.+.+++++|...+++.++..+.....-|...+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33445666666666666666542221 1111 23445666677777777777776665333222233223333221
Q ss_pred c---------------CCH---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 338 A---------------RLQ---GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399 (500)
Q Consensus 338 ~---------------~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (500)
. .+. .+|...|+.++ .-|-...-..+|...+..+...= ...--
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~l----a~~e~ 179 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDRL----AKYEL 179 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHHH----HHHHH
Confidence 1 011 22333333333 33333333444544444333210 11112
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+..-|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|..+.....
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677888888888888887764 223345566677788888888888877665443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.018 Score=57.13 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+...|..+.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555444445566666666666666544 35556666666666666666666666655543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0014 Score=45.25 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=50.4
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALI 187 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 187 (500)
+.|++++|++.|+.+.... +.+...+..+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4688999999999988763 668888888999999999999999999998876 57766655554
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.047 Score=54.29 Aligned_cols=137 Identities=10% Similarity=0.003 Sum_probs=97.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhcc--------CCHHHHHHHHHH
Q 010807 320 KEKPTLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYC--------DNVSRAREIFDE 385 (500)
Q Consensus 320 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~--------~~~~~A~~~~~~ 385 (500)
+.+.+...|...+.+.... +..+.|..+|++..+. .|+ ...|..+..++... .++..+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3556778888888775443 2366888899988885 455 44444443333221 123444455544
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 386 LSKL-GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 386 ~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
.... ....+...|.++...+...|++++|...++++...+ |+...|..+...+...|+.++|.+.+++.....
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4332 233456788888777778899999999999999874 788999999999999999999999999887553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.024 Score=43.86 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=39.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKD--MKVSTLNAMLEAYCMN 408 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~ 408 (500)
.++-..|+.++|+.+|+.....|.... ...+-.+...+...|++++|..++++....... .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555543332 223334444555555555555555554442111 0111122222344455
Q ss_pred CChhhHHHHHHHHH
Q 010807 409 GLPTEADLLFENSH 422 (500)
Q Consensus 409 g~~~~A~~~~~~m~ 422 (500)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.31 Score=48.43 Aligned_cols=42 Identities=5% Similarity=-0.007 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 010807 433 YKLLYKAYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALET 474 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~ 474 (500)
|-.|.+-....|.++.|++.--.+.+. .+-|....|.-+.-+
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALA 1066 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHH
Confidence 334444455678888888776666554 566666666544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.022 Score=44.09 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=80.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD----SSTYKLLYK 438 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~ 438 (500)
.+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++.... .|+ ......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 355677789999999999999999886543 345666778899999999999999998875 243 223333445
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010807 439 AYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 477 (500)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 477 (500)
++...|+.++|+..+-.... ++..-|...|..|+.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 77889999999998876654 344477777777653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0019 Score=44.57 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|++++|.++|+.+....+. +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666654322 5555556666666666666666666665554
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.084 Score=45.91 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 210 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~ 210 (500)
-+.++..+...|.+.-...++.+..+...+.++.....|.+.-. +.|+.+.|...|+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M----Q~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM----QIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH----hcccHHHHHHHHHHH
Confidence 34444444455555555555555555433334444444444333 444555555555533
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0032 Score=43.56 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 010807 395 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN-MKELVQKLLKRME 457 (500)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 457 (500)
+.+|..+...+...|++++|+..|.+.++.. +-+...|..+..++...| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4445555555555555555555555555542 223445555555555555 4555555555444
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0033 Score=42.87 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=23.6
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+...|++++|.+.|+.+.+..+ -+...+..+..++...|++++|...|++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444331 134444444444444444444444444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.18 Score=43.55 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=41.0
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIA-DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
-...-..|++.+|++.|+.+.......+ -....-.++.++.+.|+++.|...|+++.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444567899999999999887632211 2345667788888999999999999998775
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.48 Score=47.15 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNM-GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
..|-.|..--...|.++.|+..--.+.+. .+-|....|..|.-+-+....+...-+.|-++....--|+.
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a 1092 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDA 1092 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHH
Confidence 34444445556678888887766555542 46677888888877766666666666666555554433443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0058 Score=49.77 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRF 467 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 467 (500)
.....++..+...|++++|..++..+.... +-|...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445666777777888888888888877764 44677888888888888888888888877753 388888765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.27 Score=48.38 Aligned_cols=89 Identities=16% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH---------
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--------- 395 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------- 395 (500)
..+...+...+.+...+.-|.++|..|-.. ..+++.+...+++++|..+-+...+. .||+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344444444445556666777777766432 34677777888888888777766552 1222
Q ss_pred --HHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 396 --STLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 396 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.-|...-.+|.+.|+-.+|..+++++...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 11233345667777777787777776554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.029 Score=43.87 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 438 (500)
|..++..+|.++++.|+++....+++..= |+.++.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44566677777777777777666664332 2211110 00000 1122346788888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhcCCCCC
Q 010807 439 AYTKANMKELVQKLLKRMEQN-GIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
+|..+|++..|+++++...+. ++..+..++..+++-+....+..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~ 105 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKR 105 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc
Confidence 888888888888888888765 78878888888888776655543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.078 Score=47.32 Aligned_cols=102 Identities=12% Similarity=0.038 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCCCHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTPDSSTY 433 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~ 433 (500)
+-|...|..|..+|...|+++.|..-|....+.. .+++..+..+..++.... ...++..+|+++...+ +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4567788888888888888888888888777753 346777777766665433 3466788888887764 4456667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 434 KLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 434 ~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777778888888888888888888663
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0066 Score=41.35 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=49.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+...+.+.|++++|...|+++++.. +-+...+..+..++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999885 336778888999999999999999999998754
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.11 Score=48.19 Aligned_cols=131 Identities=8% Similarity=-0.039 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHH----HhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCC-CCCHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKM----TAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSK----LGK-DMKVS 396 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~ 396 (500)
.|..|...|.-.|+++.|+...+.- ++.|-. .....+..+..++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444444444555555555444322 222211 1123455555566666666666655553322 111 11233
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHNM-----GVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+.-+|...|.-..++++|+.++.+-... ...-....+..|..+|...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445555555555666666655442210 011234556666666666666666666555443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.41 Score=44.67 Aligned_cols=156 Identities=12% Similarity=-0.012 Sum_probs=91.4
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHHHhCCCCCCHHHH------------
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID--SYGKRQAFDKMEQVFKSLMHSKEKPTLPTF------------ 328 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------ 328 (500)
.++.-.|+.++|..+-....+..-. + .+...++ ++.-.++.+.+...|++.+..+ |+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 4556678888888877776655322 2 2333332 3444678888888888877643 333211
Q ss_pred -HHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 329 -NSMIINYGKARLQGKAEYVFQKMTAM---KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 329 -~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
..-..-..+.|.+..|.+.|.+.+.. .+.++...|.....+..+.|+..+|+.--++..+.+.. -+..|..-..+
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c 330 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANC 330 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHH
Confidence 11122234667777777777777653 24455666777777777777777777777776664310 01122222334
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 010807 405 YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~ 424 (500)
+...++|++|.+-|++..+.
T Consensus 331 ~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45566777777777766554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.39 Score=44.45 Aligned_cols=282 Identities=11% Similarity=0.032 Sum_probs=130.8
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAV--MGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
|+-..|.++-.+..+. +..|..-.-.++.+ -.-.|+.+.|.+-|+.|.. |..+-..=+.++.-.....|+.
T Consensus 98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 4555555544433322 22333333333332 2345777777777777764 2233222233332222256666
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHhh---cCCHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI-LAPDIYT--YNGVMDAYGK---NGMIKEM 274 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~---~g~~~~a 274 (500)
+.|.++-+..-+. -+.-.+.+...+...|..|+|+.|+++++.-+... +.++..- -..|+.+-+. ..+...|
T Consensus 171 eaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 171 EAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 6666666665532 13345667777777777777777777777654432 3333321 1222221111 1223333
Q ss_pred HHHHHHHHhCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 275 ESVLSRMKSNQCKPDIITF-NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
...-.+..+ +.||..-- ..-..++.+.|+..++-.+++.+-+..+.|+... +-.+.+.|+ .+.+-++...+
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd--ta~dRlkRa~~ 320 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD--TALDRLKRAKK 320 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC--cHHHHHHHHHH
Confidence 333333222 23333221 1223455666666666666666665544443321 111223333 23332332222
Q ss_pred -CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHHh
Q 010807 354 -MKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM-NGLPTEADLLFENSHN 423 (500)
Q Consensus 354 -~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~ 423 (500)
..++|| ......+..+-...|++..|..--+..... .|....|..|...-.. .|+-.++...+.+...
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 112333 344444555555566666555544444432 3445555555544333 2666666666655554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0063 Score=42.02 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHh
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-LPTEADLLFENSHN 423 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 423 (500)
..+|..+...+...|++++|+..|++..+... -+...|..+..+|...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566666666667777777777776666542 25566666666777776 56777776666554
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.043 Score=49.27 Aligned_cols=87 Identities=8% Similarity=-0.043 Sum_probs=35.5
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSHNMG--VTPDSSTYKLLYKAYTKANMKE 447 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~ 447 (500)
+.|++++|...|+.+.+..+... ...+-.+..+|...|++++|...|+.+.+.- -......+..+...+...|+.+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence 33444444444444444321110 1233344444444555555555554444321 0011222333333444445555
Q ss_pred HHHHHHHHHHH
Q 010807 448 LVQKLLKRMEQ 458 (500)
Q Consensus 448 ~a~~~~~~m~~ 458 (500)
+|..+|++..+
T Consensus 235 ~A~~~~~~vi~ 245 (263)
T PRK10803 235 KAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.23 Score=40.92 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCC
Q 010807 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI---LAPD 254 (500)
Q Consensus 178 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~ 254 (500)
|++..--.|-.++. ..|+..+|...|++... +-...|......+.++....+++..|...++.+.+.. -.||
T Consensus 87 pTvqnr~rLa~al~----elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 87 PTVQNRYRLANALA----ELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hhHHHHHHHHHHHH----HhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 44443344444444 45555555555555543 2233444455555555555555555555555554432 1122
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 010807 255 IYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284 (500)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 284 (500)
+.-.+...+...|...+|..-|+.....
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 2223344455555555555555555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.23 Score=40.90 Aligned_cols=126 Identities=8% Similarity=0.009 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCCHHHH
Q 010807 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITY 363 (500)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~ 363 (500)
.|++..--.|..+....|++.+|...|++...--..-|......+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555555666666666666666666665544344455556666666666666666666666665532 1222 23
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
-.+.+.+...|...+|+.-|+.....- |+...--.....+.++|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 345556666666666666666666543 333333333444555565555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.089 Score=46.97 Aligned_cols=100 Identities=11% Similarity=0.053 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
|...|..|...|...|+.+.|..-|.+..+.. .++...+..+..++... .+-.++..+|+++.+.+. -|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 77788888888888888888888888877742 34555555555554332 235677888888887653 36777777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7778888888888888888888763
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.49 Score=44.47 Aligned_cols=163 Identities=13% Similarity=0.016 Sum_probs=77.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHSK---EKPTLPTFNSMIINYGK---ARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|..++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33334555555666666555554431 01111111222333334 5556666666555444333455555555554
Q ss_pred HHhc---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh----hHHHHH---H-HHHhCCC---CC
Q 010807 369 MYGY---------CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT----EADLLF---E-NSHNMGV---TP 428 (500)
Q Consensus 369 ~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~-~m~~~~~---~p 428 (500)
.|-. ...+++|+..|.+.-+.. ||...--.+.-.+.-.|... +..++- . ...+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112566666666554432 33332222222233333211 112221 1 1112221 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 429 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|-..+..++.++.-.|+.++|.+.+++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4555677777888888888888888888866
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=47.19 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=62.8
Q ss_pred cchhHHHHHHHHHHhcCC-------CchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHH
Q 010807 75 EELESKELVRVLMRSFSD-------KEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGI 147 (500)
Q Consensus 75 ~~~~a~~l~~~l~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 147 (500)
.+..+...+...+..+.. ..++......+.+..-......+++.+...|++++|+...+.+.... +.|...
T Consensus 21 ~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~ 98 (146)
T PF03704_consen 21 DPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD--PYDEEA 98 (146)
T ss_dssp -HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHH
Confidence 334555555555554411 11233333333333333444556666667888888888888888874 667888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRN-----SGCRPDPSVY 183 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 183 (500)
|..+|.+|...|+...|.++|+.+.. .|+.|+..+-
T Consensus 99 ~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 99 YRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 88888888888888888888888753 4777776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.4 Score=41.43 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=82.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
..+...|++++|.+.|+.+...-.. --....-.++.++.+.|+++.|...++++++.-+.....-+...+.+.+....
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3345566666666666666554111 11223345556666667777777777766654332222222222222211110
Q ss_pred HhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 341 QGKAEYVFQKMTAMKYTPS-------FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
..... . ...| ...+..++.-|=...-..+|...+..+.+.= ...--.+...|.+.|.+..
T Consensus 93 ~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 93 IPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHH
T ss_pred Cccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHH
Confidence 00000 0 0001 1234445555555566666665555554320 1111235667788888888
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 010807 414 ADLLFENSHNMGVTPD----SSTYKLLYKAYTKANMKELVQ 450 (500)
Q Consensus 414 A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~ 450 (500)
|..-++.+++. -|+ ......++.+|.+.|..+.+.
T Consensus 160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888887775 333 334566777777877776443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.065 Score=48.18 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PDIITFNLLI 297 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li 297 (500)
.|...+..+.+.|++++|+..|+.+.+..+... ...+..+...|...|++++|...|+.+.+.-.. .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555666666666666665432211 234455556666666666666666666543111 1122333344
Q ss_pred HHHhccCCHHHHHHHHHHHHhC
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
.++...|+.++|..+|+.+++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555566666666666666553
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.63 Score=42.54 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=94.5
Q ss_pred ccCCHHHHHHHHHHHHHcc-CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCCH-----
Q 010807 121 KSDKWLQCLEVFRWMQKQR-WYIADT------GIYSKLIAVMGKKGQTRLAMWLFSEMRNS--------GCRPDP----- 180 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~-~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~----- 180 (500)
++|+++.|...+.++.... ...|+. ..|+.-...+.+..+++.|...+++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5688888888888876643 233333 23444444444433888887777765432 122332
Q ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 181 SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG 260 (500)
Q Consensus 181 ~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 260 (500)
.+...++.+|...+ .....++|..+++.+.... +-.+.++-.-+..+.+.++.+++.+++..|...-.. ....+..
T Consensus 85 ~iL~~La~~~l~~~-~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWD-TYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHH
Confidence 35556666776555 4556777888888886532 223455556666677788888888888888775321 2333444
Q ss_pred HHHHH---hhcCCHHHHHHHHHHHHhCCCCCCH
Q 010807 261 VMDAY---GKNGMIKEMESVLSRMKSNQCKPDI 290 (500)
Q Consensus 261 ll~~~---~~~g~~~~a~~~~~~m~~~~~~~~~ 290 (500)
++..+ ... ....|...++.+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44333 332 234555555555544444443
|
It is also involved in sporulation []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.75 Score=42.71 Aligned_cols=111 Identities=16% Similarity=0.036 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
+.+..|.-+...|+...|.++-.+. -.|+...|...+.+++..++|++...+-.. . -.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 3445556666778888888777766 346888888888888888888877765432 1 23366778888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
+.|+..+|..+... ++ +..-+..|.+.|++.+|.+.--+..
T Consensus 249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 88888888877765 11 2455677888888888877655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.43 E-value=1.2 Score=44.87 Aligned_cols=312 Identities=9% Similarity=0.033 Sum_probs=166.4
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQT--RLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
.++..+...+.+..|+++-+++.... ..+..+|......+.+..+. +++.+..++=......|....-+..-.+|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay- 518 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAY- 518 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHH-
Confidence 35666666788888999988886542 11245677777777766432 23333333333322344444433333444
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----------CCCCHHH
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCK---PNIVTYNILLRACAQARNVDQVNALFKELHESI-----------LAPDIYT 257 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~~~ 257 (500)
.+|+.+-|..+++.=....... .+..-+...+.-+.+.|+.+....++-.+...- .+.....
T Consensus 519 ----~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~l 594 (829)
T KOG2280|consen 519 ----QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSL 594 (829)
T ss_pred ----hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHH
Confidence 7889999998887654321111 122235566777888899888888877765431 0111111
Q ss_pred HHHHHHH--------HhhcCCHHHHHHHHH--HHH----hCCCCCCHHHHHHHHHHHhccCCHHHH----------HHHH
Q 010807 258 YNGVMDA--------YGKNGMIKEMESVLS--RMK----SNQCKPDIITFNLLIDSYGKRQAFDKM----------EQVF 313 (500)
Q Consensus 258 ~~~ll~~--------~~~~g~~~~a~~~~~--~m~----~~~~~~~~~~~~~li~~~~~~~~~~~a----------~~~~ 313 (500)
|..+++. +...++..++...|. ... ..|..|+ .....++|.+.....-. +++.
T Consensus 595 Y~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ 671 (829)
T KOG2280|consen 595 YRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQ 671 (829)
T ss_pred HHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 2222210 011111111111111 000 0112222 22333344443321111 1122
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 010807 314 KSLMHS-KEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD 392 (500)
Q Consensus 314 ~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 392 (500)
+.+... |.....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+....
T Consensus 672 ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---- 743 (829)
T KOG2280|consen 672 RTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---- 743 (829)
T ss_pred HHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----
Confidence 222211 222233344455556667788888877766554 47778888888888888888876665544331
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
+.-|.-.+.+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++.-
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv~~------l~---ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRVGG------LQ---EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhccCC------hH---HHHHHHHHhccHHHHHHHHH
Confidence 34456677888888888888888765321 11 55677888888888776543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.024 Score=39.56 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=31.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|.+.+++++|.++++.+...++. ++..|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455556666666666665555322 4555555555566666666666666655544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.27 Score=48.59 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=95.6
Q ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-----HHHHHHHHHHHHcCcchHHHHH
Q 010807 128 CLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSG-CRPD-----PSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 128 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~li~~~~~~~~~~~~~~ 201 (500)
...+|.-+... +||. +..++...+=.||-+.+++++.+..+.+ +.-. ...|+..+..++.........+
T Consensus 176 G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 176 GFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 44455555543 3332 4556666666666666666666654421 1111 1233444443332200244566
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNI-LLRACAQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
.|.++++.+... -|+...|.. -.+.+...|++++|++.|+...... .......+--+.-.+.-..++++|.+.
T Consensus 251 ~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 251 EAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred HHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 777777777652 455444443 3455566777777777777554311 122333444455566677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHH-HHHhccCCH-------HHHHHHHHHHH
Q 010807 278 LSRMKSNQCKPDIITFNLLI-DSYGKRQAF-------DKMEQVFKSLM 317 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li-~~~~~~~~~-------~~a~~~~~~~~ 317 (500)
|..+.+..-- +..+|.-+. .++...++. ++|.++|.++.
T Consensus 328 f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777765322 333333322 233445555 77777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.36 Score=39.26 Aligned_cols=86 Identities=10% Similarity=-0.033 Sum_probs=46.2
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|......+. -|+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34566666666666555543 23344445555555556666666666655444332 13333444555666666666666
Q ss_pred HHHHHHHh
Q 010807 416 LLFENSHN 423 (500)
Q Consensus 416 ~~~~~m~~ 423 (500)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66665554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.016 Score=41.18 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNM----GV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666554432 10 111 3455556666666666666666666544
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.52 Score=43.19 Aligned_cols=137 Identities=11% Similarity=0.204 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHcCC-
Q 010807 161 TRLAMWLFSEMRNSGCRPDPSVYNALITAHL--HTRDKAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARN- 235 (500)
Q Consensus 161 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~- 235 (500)
+++...+++.|.+.|+.-+..+|-+...... ...+......+|..+|+.|++.... .++-.++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 4566788999999999998888877444333 2233456788899999999874321 3445556666544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 236 ---VDQVNALFKELHESILAPDI--YTYNGVMDAYGKNGM--IKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 236 ---~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 35567777888777765443 333344433332222 34677778888888887777766655443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.13 Score=40.25 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSK-LGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 407 (500)
...|+..+..+++.+|+..+++..|.++.+...+ .+++.+..+|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3567777777777777777777777777776654 4456667777777765443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.23 E-value=1 Score=41.85 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYC 406 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 406 (500)
+.+..|.-+...|+...|..+-.+.. .|+...|..-+.+++..++|++-.++... . -.+..|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556677778899888888866553 48999999999999999999988776432 1 13577889999999
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988872 2 245567788999999988765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.94 Score=41.39 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010807 257 TYNGVMDAYGKNGMIK---EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+.+.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445555555555433 344444444333221 2333434445555566666666666666654
|
It is also involved in sporulation []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.42 Score=38.89 Aligned_cols=91 Identities=7% Similarity=-0.040 Sum_probs=75.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 446 (500)
..-+...|++++|..+|.-+...++ .+..-|..|..++-..+++++|+..|......+ .-|+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 3344568999999999998887654 367788899999999999999999999876655 24555677788899999999
Q ss_pred HHHHHHHHHHHHC
Q 010807 447 ELVQKLLKRMEQN 459 (500)
Q Consensus 447 ~~a~~~~~~m~~~ 459 (500)
+.|...|+...+.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988873
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.017 Score=41.01 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSK----LGKD-MK-VSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+|+.+...|...|++++|+..|++..+ .|.. |+ ..+++.+..+|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666666666665543 1111 11 4456666666667777777776666544
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.1 Score=41.61 Aligned_cols=295 Identities=13% Similarity=0.048 Sum_probs=187.7
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHH--H
Q 010807 148 YSKLIAVMG--KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT--Y 223 (500)
Q Consensus 148 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 223 (500)
|..|-.++. -.|+-..|.++-.+-.+. +.-|..-...++.+-... -.|+++.|.+-|+.|.. .|.... .
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal--~eG~~~~Ar~kfeAMl~----dPEtRllGL 157 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAAL--LEGDYEDARKKFEAMLD----DPETRLLGL 157 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHH--hcCchHHHHHHHHHHhc----ChHHHHHhH
Confidence 444444443 467888888877665432 344555555555544332 56889999999999996 333222 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHH
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ-CKPDIIT--FNLLIDSY 300 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~--~~~li~~~ 300 (500)
..|.-...+.|+.+.|.+.-++.-..-.. -.-.....+...+..|+++.|+++++.-++.. +.++..- -..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 23333445689999999888887654332 34567788999999999999999999866542 3334321 12233221
Q ss_pred h---ccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 301 G---KRQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 301 ~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
. -..+...|...-.+..+ ..||.. .-..-..++.+.|+..++-.+++.+-+....|+ .+. +..+.+.|+.
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdt 310 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDT 310 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCc
Confidence 1 12345566665555444 445533 223345778899999999999999998754444 332 2334455653
Q ss_pred HHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHH
Q 010807 377 SRAREIFDELSK-LGKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMKELVQKLL 453 (500)
Q Consensus 377 ~~A~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~ 453 (500)
++.-++...+ ..++| +..+--.+..+-...|++..|..--+..... .|....|..|.+.- ...||-.++..++
T Consensus 311 --a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 311 --ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred --HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHH
Confidence 2222222221 11222 4666777788888999999988777776654 78888888888855 4559999999999
Q ss_pred HHHHHCC
Q 010807 454 KRMEQNG 460 (500)
Q Consensus 454 ~~m~~~g 460 (500)
.+..+.-
T Consensus 387 Aqav~AP 393 (531)
T COG3898 387 AQAVKAP 393 (531)
T ss_pred HHHhcCC
Confidence 8887653
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.1 Score=41.19 Aligned_cols=132 Identities=13% Similarity=0.230 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--cC----CHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGK--NG----MIKEMESVLSRMKSNQCK---PDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~ 306 (500)
+++.+.+++.|.+.|+.-+..+|-+....... .. ....+.++|+.|++.-.. ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556778888888888777777654333332 22 245678888888876322 344455555443 33332
Q ss_pred ----HHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 307 ----DKMEQVFKSLMHSKEKPTL--PTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITYECIITM 369 (500)
Q Consensus 307 ----~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 369 (500)
+.++.+|+.+.+.|...+- .....++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4566677777776665432 233333332222222 33566777777777777766666555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.049 Score=50.37 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh----CC-CCCCH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELS----KLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHN----MG-VTPDS 430 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~ 430 (500)
..|..|...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 457777788888899999987765332 23311 1245678899999999999999999886432 22 12345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhcCCC
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQN-----GIVPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~ 480 (500)
.....|.+.|.-..+++.|+.++.+-..- ...-....+.++-.+|...|.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 56677888888888889998887654421 122233445555555544433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.05 Score=37.93 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=47.3
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSV 182 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 182 (500)
.+.+.++|+.|+++++.+.... +.+...|.....++.+.|++++|...|+...+. .|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~ 64 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD 64 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence 3456788888888888888864 557777888888888889999998888888875 454443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.079 Score=46.56 Aligned_cols=89 Identities=17% Similarity=0.289 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC----------------CHHHHH
Q 010807 217 KPNIVTYNILLRACAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----------------MIKEME 275 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~a~ 275 (500)
+.|-.+|..++..+... +.++-....++.|.+.|++-|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 45666666666666543 556667777778888888888888888887754432 224477
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
+++++|...|+.||-.+-..|++++++.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 888888888888888888888888877664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.8 Score=44.80 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHhhcCCH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM----DAYGKNGMI 271 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll----~~~~~~g~~ 271 (500)
..+++++|+.-+..+.. ..|.-.++.--+.|.+++|+.++ .|+...+..+. +.+...+.+
T Consensus 892 ~L~ry~~AL~hLs~~~~--------~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~ 955 (1265)
T KOG1920|consen 892 YLKRYEDALSHLSECGE--------TYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMS 955 (1265)
T ss_pred HHHHHHHHHHHHHHcCc--------cccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccc
Confidence 44667777777766652 12333444455666677776666 34554444433 333445566
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP--TFNSMIINYGKARLQGKAEYVFQ 349 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~ 349 (500)
++|.-.|+..-+ ..-.+.+|..+|+|++|..+..++... .+.. +-..|+.-+...+++-+|-+++.
T Consensus 956 ~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 956 DEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred cHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 666555554422 133455666667777776666655321 1111 12445555666666666666655
Q ss_pred HHH
Q 010807 350 KMT 352 (500)
Q Consensus 350 ~m~ 352 (500)
+..
T Consensus 1024 e~~ 1026 (1265)
T KOG1920|consen 1024 EYL 1026 (1265)
T ss_pred HHh
Confidence 544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.5 Score=41.54 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLG-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTY-KLLYK 438 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 438 (500)
.+|.+.++...+...++.|..+|-++.+.+ +.+++.++++++.-++. |+..-|..+|+--... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456777888788888999999999999887 56788889999887775 6778888888764443 3454444 34455
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhcCCCC
Q 010807 439 AYTKANMKELVQKLLKRMEQNGIV--PNKRFFLEALETFSSSLAG 481 (500)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~ 481 (500)
.+..-++-+.|..+|+....+ +. .-...|..+|+-=..-|+.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 566677777777777644432 11 1134555555544444444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.1 Score=39.36 Aligned_cols=143 Identities=10% Similarity=-0.004 Sum_probs=95.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH-----HH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE-----CI 366 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-----~l 366 (500)
..+.++.+....|.+.-....+.++++...+.++.....|++.-.+.||.+.|...|+...+..-..|..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3456666667777888888888888777666677777778888888888888888888766543233333333 33
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
...|.-.+++..|...+.++...+.. |+...|.=.-+....|+...|++.++.|... .|...+-+.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34456667777788888777776532 5555665555666677888888888888775 45555544443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.17 Score=48.29 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
+...++.+..+|...|++++|...|++.++. .|+. .+|..+..+|...|++++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666777777777777777666664 3442 24666666666677777777766666664
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.5 Score=36.61 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+...+.|+-+.-.+++.++... -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333344444444444433321 22333333344444444444444444444444333
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.15 Score=48.53 Aligned_cols=101 Identities=7% Similarity=-0.061 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV--STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYK 434 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 434 (500)
+.+...++.+..+|...|++++|+..|++.++.+..... .+|..+..+|...|+.++|++.+++.++.+ .+ .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 345788999999999999999999999999886533211 458999999999999999999999998752 11 222
Q ss_pred HHHH--HHHHcCCHHHHHHHHHHHHHCCC
Q 010807 435 LLYK--AYTKANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 435 ~li~--~~~~~g~~~~a~~~~~~m~~~g~ 461 (500)
.+.. .+..-.+.++..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11122333455666666666654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.6 Score=42.70 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
+.+--+.-+...|+-.+|.++-.+. -.||-..|-.-+.+++..+++++.+++-+.+.. +.-|.-++.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHH
Confidence 4445555566779999999888877 457888898899999999999988777655442 345667899999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
+.|+.++|.+++-+.... . -...+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 999999999988654321 1 567889999999999877655
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.84 Score=36.65 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33333334444444444444444332 233344444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.63 E-value=2 Score=40.44 Aligned_cols=77 Identities=12% Similarity=0.122 Sum_probs=39.2
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWY--IADTGIYSKLIAVMGK---KGQTRLAMWLFSEMRNSGCRPDPSVYNALIT 188 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 188 (500)
.++-.+....+|+..+++++.+...... .....+-....-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444555556666666666666554211 1112222233344445 6666666666666544444555555555554
Q ss_pred HH
Q 010807 189 AH 190 (500)
Q Consensus 189 ~~ 190 (500)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2 Score=40.30 Aligned_cols=261 Identities=12% Similarity=0.052 Sum_probs=152.0
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-----CCCH--HHHHHHHHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS--GC-----RPDP--SVYNALITAHL 191 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-----~p~~--~~~~~li~~~~ 191 (500)
+..++..|+..+....+.. +.++.-|..-...+...|++++|.--.+.-.+. |. +++. .....+|.+..
T Consensus 61 k~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHH
Confidence 4456777777777777653 445666777777777777777766555443321 11 1111 11122222221
Q ss_pred cCcc-hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhh
Q 010807 192 HTRD-KAKALAKALGYFQKMKGMERCKPNIVTYNILL-RACAQARNVDQVNALFKELHESILAPDIYTYNGVMD--AYGK 267 (500)
Q Consensus 192 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~ 267 (500)
...+ ..+....++..++.......-+|...+|-.+- ..+.-.|+.++|.++--..++... ...+...++ ++.-
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYY 215 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccccccc
Confidence 1100 11122233333333332222234445554443 344567889999888777766532 223333333 4455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHH----------HhccCCHHHHHHHHHHHHhCC---CCCCHHHHHHH
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFN---LLIDS----------YGKRQAFDKMEQVFKSLMHSK---EKPTLPTFNSM 331 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~---~li~~----------~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l 331 (500)
.++.+.+...|++....+ |+...-. ..... ..+.|.+..|.+.|.+.+... ..++...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 778899999999887663 3333222 22222 246899999999999987643 34566678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
..+..+.|+..+|+.--+...+.. +. ...|..-..++.-.++|++|.+-|+...+..
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888889999999999888877632 21 2233333445666788999999998887754
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.14 Score=45.11 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------------CHHHHHH
Q 010807 253 PDIYTYNGVMDAYGK-----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ----------------AFDKMEQ 311 (500)
Q Consensus 253 p~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~----------------~~~~a~~ 311 (500)
-|..+|-+.+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-+++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355666666655543 4567777788899999999999999999999886632 2246789
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHH
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQ-GKAEYVFQKMT 352 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~ 352 (500)
++++|...|+.||..+-..+++++++.+-. .+...+.-.|-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999999887653 33444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.25 Score=48.04 Aligned_cols=151 Identities=7% Similarity=0.037 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHH--HhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 010807 197 AKALAKALGYFQ--KMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEM 274 (500)
Q Consensus 197 ~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 274 (500)
.++++++.++.. ++. ..++ ....+.++..+.+.|..+.|+++..+-. .-.....+.|+++.|
T Consensus 274 ~~d~~~v~~~i~~~~ll--~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLL--PNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp TT-HHH-----HHHHTG--GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred cCChhhhhhhhhhhhhc--ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 445666555554 222 1111 3446777777777777777777764321 223445567777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 275 ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 275 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.++.++. .+...|..|.+...+.|+++-|++.|++.. -|..|+-.|.-.|+.+....+.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7665433 256677777777777777777777777642 2455666667777777777776666665
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
|- ++....++.-.|+.++..+++.
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 51 3444444445566666665554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.3 Score=40.41 Aligned_cols=130 Identities=16% Similarity=0.062 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
.+|...+.+-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+...|.++|+--... ++-+..--+-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 456677777777788899999999999988 6678888999998877 58888999999854443 22233344566777
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+...++-+.|..+|+..+.. +.-+ ...|..+|.--..-|+...+..+-++|.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 78889999999999865542 1222 45788888887888888877777777764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.7 Score=43.03 Aligned_cols=183 Identities=12% Similarity=0.070 Sum_probs=117.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHH
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL------PTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFIT 362 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~ 362 (500)
+..+++..+=.||-+.+++.+.+..+.+-...+ -.|+..+..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 456666777788888888888876554222122 234444444333 45678899999999885 467655
Q ss_pred HHH-HHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 363 YEC-IITMYGYCDNVSRAREIFDELSKLG---KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK 438 (500)
Q Consensus 363 ~~~-li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 438 (500)
|.. -.+.+...|++++|.+.|+...... .+.....+--+..+++-.++|++|.+.|..+.+.. .....+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 543 3456777899999999999765411 12233445566777888999999999999998864 334555555555
Q ss_pred HH-HHcCCH-------HHHHHHHHHHHHC-----C-CCCCHHHHHHHHHHHhcC
Q 010807 439 AY-TKANMK-------ELVQKLLKRMEQN-----G-IVPNKRFFLEALETFSSS 478 (500)
Q Consensus 439 ~~-~~~g~~-------~~a~~~~~~m~~~-----g-~~p~~~~~~~ll~~~~~~ 478 (500)
+| ...|+. ++|.++|++.... | -.|-......=++.|...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 43 456777 8888888877542 2 224344444445555444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.6 Score=37.85 Aligned_cols=207 Identities=11% Similarity=0.109 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010807 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYN 224 (500)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (500)
...|.....+|....++++|...+.+..+- .+.+...|. ....++.|.-+.+++... .--+..|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-----------AAKayEqaamLake~~kl---sEvvdl~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-----------AAKAYEQAAMLAKELSKL---SEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-----------HHHHHHHHHHHHHHHHHh---HHHHHHHH
Confidence 456777888888899999999888777632 233443333 233466666666666542 22344677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHH
Q 010807 225 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---QC--KPDIITFNLLIDS 299 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~--~~~~~~~~~li~~ 299 (500)
-....|..+|..+.|-..++..-+. .+.-++++|+++|++.... +- ..-...+..+-..
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 7778888888888887777665331 2233445566655543221 10 0112223344445
Q ss_pred HhccCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHh
Q 010807 300 YGKRQAFDKMEQVFKSLMHS----KEKPTL-PTFNSMIINYGKARLQGKAEYVFQKMTAMK---YTPSFITYECIITMYG 371 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~ 371 (500)
+.+...+++|-..|.+-... ...++. ..|-..|-.|.-..++..|...++.-.+.+ -.-+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 55556666555444332110 011111 234444445555556666666666543322 1123455566666654
Q ss_pred ccCCHHHHHHHH
Q 010807 372 YCDNVSRAREIF 383 (500)
Q Consensus 372 ~~~~~~~A~~~~ 383 (500)
.||.+++..+.
T Consensus 240 -~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 -EGDIEEIKKVL 250 (308)
T ss_pred -cCCHHHHHHHH
Confidence 45555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.32 Score=45.29 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
.+++.+..+|.+.+++.+|+..-...+..+ ++|....-.=..+|...|+++.|+..|+++.+..+ -|..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 456677777888888888888888877765 56677777777788888888888888888887542 2445555555555
Q ss_pred HhcCChhh-HHHHHHHHHh
Q 010807 406 CMNGLPTE-ADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~-A~~~~~~m~~ 423 (500)
-+..++.+ ..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 55544433 3667777654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.1 Score=35.90 Aligned_cols=41 Identities=5% Similarity=0.090 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444432 244444444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.33 E-value=3.4 Score=41.13 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=11.9
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.+|.+.|+-.+|.++++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 345555666666666665544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.5 Score=34.09 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE 321 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 321 (500)
+...++.....|+-|.-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344444555555555555555555432 234455555555556666665555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.75 E-value=4 Score=38.94 Aligned_cols=385 Identities=11% Similarity=0.111 Sum_probs=202.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHcc---CCCCCHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQR---WYIADTGIYS 149 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 149 (500)
++....|.+.+....+...+..+..--++.+....+.--.....+.+.+.|++.++..+++.|...- ...-++.+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 3445556666665555433333322222222222222222345566777899999999988886642 1235788888
Q ss_pred HHHHHHHhcCC--------HHHHHHHHH-------HHHH------cCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Q 010807 150 KLIAVMGKKGQ--------TRLAMWLFS-------EMRN------SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQ 208 (500)
Q Consensus 150 ~li~~~~~~g~--------~~~A~~~~~-------~m~~------~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~ 208 (500)
.++-.+++.=- .+-+.+.|+ +|.. ..+.|.......++....-. ......--.++++
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~--p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV--PKERLPPLMQILE 249 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC--CHhhccHHHHHHH
Confidence 86666654311 111122222 2211 12344445555555444322 1122222222222
Q ss_pred HhhcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 209 KMKGMERCKPNI-VTYNILLRACAQARNVDQVNALFKELHESILAP----DIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 209 ~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.... .-+.|+- .+...|...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+..
T Consensus 250 ~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 250 NWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 2221 2234542 234445555544 5555555555543332111 245788888899999999999988887765
Q ss_pred CCCCCCHHHH-------HHHHHHHhc-c---CCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCC-HhHHHHHH
Q 010807 284 NQCKPDIITF-------NLLIDSYGK-R---QAFDKMEQVFKSLMHSKEKPTLPTFNSMI---INYGKARL-QGKAEYVF 348 (500)
Q Consensus 284 ~~~~~~~~~~-------~~li~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~ 348 (500)
.. |+...- ..+-+..+. - -+...-+.+|+......+.. .....-|+ .-+-+.|. -++|..++
T Consensus 327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 42 332211 122223331 1 12233344555554433321 11222222 22344454 78899999
Q ss_pred HHHHhCCCCCCHHHHHHH----HHHHhc---cCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhcCChhhHH
Q 010807 349 QKMTAMKYTPSFITYECI----ITMYGY---CDNVSRAREIFDELSKLGKDMK----VSTLNAMLEA--YCMNGLPTEAD 415 (500)
Q Consensus 349 ~~m~~~~~~~~~~~~~~l----i~~~~~---~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~ 415 (500)
+.+.+.. .-|...-|.+ -.+|.. ...+.+-..+-+-+.+.|+.|- ...-|.|..+ +..+|++.++.
T Consensus 404 k~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 404 KLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9888742 2233322222 223322 2344555555556666777653 3344444433 45679999887
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
-.-.-+.+ +.|++.+|..+.-+.....++++|..+++ .++|+..++..-+.
T Consensus 483 ~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~-----~LP~n~~~~dskvq 533 (549)
T PF07079_consen 483 LYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ-----KLPPNERMRDSKVQ 533 (549)
T ss_pred HHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH-----hCCCchhhHHHHHH
Confidence 66555554 47899999999989999999999999997 46777777655443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.72 E-value=4.1 Score=38.88 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=12.0
Q ss_pred HcccCCHHHHHHHHHHHHHc
Q 010807 119 LGKSDKWLQCLEVFRWMQKQ 138 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~ 138 (500)
+.+++++.+|.++|.++.+.
T Consensus 16 Lqkq~~~~esEkifskI~~e 35 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE 35 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH
Confidence 34556666666666666554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.96 Score=44.11 Aligned_cols=163 Identities=11% Similarity=0.125 Sum_probs=102.1
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 192 (500)
...++...-.++++++.+..+.-.-.+.+ +....+.++..+-+.|..+.|+.+-.+-.. - .....
T Consensus 265 ~~~fk~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------r----FeLAl- 329 (443)
T PF04053_consen 265 ELEFKTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH--------R----FELAL- 329 (443)
T ss_dssp HHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------H----HHHHH-
T ss_pred HHHHHHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------H----hHHHH-
Confidence 34455555567777766665421111111 245588899999999999999888543221 1 22223
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 010807 193 TRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 272 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 272 (500)
+.|+++.|.++-++ ..+...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+
T Consensus 330 ---~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 330 ---QLGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp ---HCT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HH
T ss_pred ---hcCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHH
Confidence 67788888876443 34777999999999999999999999987642 566777788889888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 273 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (500)
...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 391 ~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 391 KLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877776653 34445555566888888777754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.69 E-value=7.5 Score=41.79 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=8.0
Q ss_pred HHHHhcCChhhHHHHHH
Q 010807 403 EAYCMNGLPTEADLLFE 419 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~ 419 (500)
..||+...+++|+.+..
T Consensus 1034 ~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHhhHhHHHHHHHHHH
Confidence 33444445555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.60 E-value=3 Score=36.74 Aligned_cols=55 Identities=18% Similarity=0.077 Sum_probs=29.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 010807 230 CAQARNVDQVNALFKELHESIL--APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 284 (500)
-.+.|++++|.+.|+.+..+.+ +-...+.-.++-++.+.+++++|+..+++....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3456666666666666654421 112334444455555666666666666665544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.60 E-value=2.2 Score=35.17 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
.++++.+.+.++.++...|..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 44555666677778888888888888888775443 344455555665555444433332 223334443344332
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 390 GKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 390 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
= ...+..++..+...|++-+|+++.+...... ......++.+..+.+|...-..+++-..++
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 1135667778888888888888887653321 122344566666666666555555555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.1 Score=40.80 Aligned_cols=153 Identities=6% Similarity=-0.025 Sum_probs=95.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHh
Q 010807 267 KNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIINYGKARLQG 342 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~ 342 (500)
-.|+..+|-..++++.+. .+.|...++..=++|.-.|+.+.....++++... -.+|. ..-....-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777777777777765 3447777777777888888888888888777644 12222 22233334455678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
+|+..-++..+.+ +.|.-...+....+.-.|+..++.++..+-...--.. -..-|=...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887777754 4455555666667777888888887776544321000 01112222334455678888888887
Q ss_pred HHH
Q 010807 420 NSH 422 (500)
Q Consensus 420 ~m~ 422 (500)
.-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 633
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.5 Score=34.67 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=81.2
Q ss_pred CcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 010807 108 RSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNAL 186 (500)
Q Consensus 108 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l 186 (500)
+..+++.-.-.+...+..++|+.-|..+.+.+--.-.+-.--.+.......|+...|+..|++.-...-.|-.. -..-|
T Consensus 57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34455555555666788888888888887765111112233344556778888888888888887654444332 11111
Q ss_pred HHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 187 ITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 187 i~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
=.+|.-. ..|.++......+.+.. ++-+--...-..|.-+-.+.|++..|.+.|.++...
T Consensus 137 raa~lLv--D~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLV--DNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHh--ccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1122111 45556666666666554 222223344456666677788888888888777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.8 Score=36.82 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=68.9
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
.....|++.+|..+|+...... +-+....-.+..+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666665543 222344455666666666666666666655443211111122222333444444444
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH--HHHHHHHHHHh
Q 010807 414 ADLLFENSHNMGVTP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQN--GIVPNK--RFFLEALETFS 476 (500)
Q Consensus 414 A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~--~~~~~ll~~~~ 476 (500)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++ |..-+. .++.+++..++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333332 23 5555556666666777777776665555543 333222 34455554443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=94.26 E-value=3.5 Score=37.08 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH-----HHhCCCCCC
Q 010807 216 CKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESVLSR-----MKSNQCKPD 289 (500)
Q Consensus 216 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~~~~~ 289 (500)
-.++..+...++..+++.+++..-.++++..... +..-|...|..+|+.....|+..-...+.++ ++..++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~ 277 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT 277 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence 3555556666666666667776666666665544 4555666666666666666666655555544 233445544
Q ss_pred HHHHHHHHHH
Q 010807 290 IITFNLLIDS 299 (500)
Q Consensus 290 ~~~~~~li~~ 299 (500)
...-..+-..
T Consensus 278 ~~L~~~L~~L 287 (292)
T PF13929_consen 278 DELRSQLSEL 287 (292)
T ss_pred HHHHHHHHHH
Confidence 4444444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.85 Score=40.36 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=25.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMG-VTP-DSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
|..++...|++++|..+|..+.+.- -.| -+..+-.|.....+.|+.++|+.+|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444555555555555554444321 011 123344444444455555555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.2 Score=34.43 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=50.7
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCC
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS---STYKLLYKAYTKANM 445 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~ 445 (500)
+....|+++.|++.|.+....- +-....||.-..++--+|+.++|++=+++..+..-.-.. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455666777777766666543 224666666666666667777766666666553111111 223333334555666
Q ss_pred HHHHHHHHHHHHHCC
Q 010807 446 KELVQKLLKRMEQNG 460 (500)
Q Consensus 446 ~~~a~~~~~~m~~~g 460 (500)
-+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.4 Score=35.81 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
+....+...+...............+......+...+++..+...+...... ........+......+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555554432100012455555566666666666666666555432 222244445555555555555666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHhccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 277 VLSRMKSNQCKPDIITFNLLID-SYGKRQAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
.+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666655543332 111111122 45555566666655555533211 01222233333334444555555555555544
Q ss_pred CCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 354 MKYTP-SFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 354 ~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.. .. ....+..+...+...++++.|...+.....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 32 11 234444444444444555555555554444
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.2 Score=41.61 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=94.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 374 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 374 (500)
.-.+.|.+.|++..|..-|++.+.. +. |...-+.++..... ..-..++..+..+|.+.+
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLK 271 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhh
Confidence 3356788889999998888876542 00 11111112211111 122346778889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCH-HHHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMK-ELVQKL 452 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~-~~a~~~ 452 (500)
++..|++.-+..++.+ +.|+...-.=..+|...|+++.|+..|+++++. .|+......=+..| .+.... +...++
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 457777777789999999999999999999986 56555544444433 333333 344677
Q ss_pred HHHHHHC
Q 010807 453 LKRMEQN 459 (500)
Q Consensus 453 ~~~m~~~ 459 (500)
|..|...
T Consensus 349 y~~mF~k 355 (397)
T KOG0543|consen 349 YANMFAK 355 (397)
T ss_pred HHHHhhc
Confidence 8888754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.8 Score=38.66 Aligned_cols=126 Identities=9% Similarity=0.024 Sum_probs=60.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh----CCCCCCHH-HH--
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQ-----CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH----SKEKPTLP-TF-- 328 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-~~-- 328 (500)
+-.++...+.++++++.|+....-- .......|..|...|.+..|+++|.-+.....+ .++. |.. -|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHH
Confidence 3444445555566665555543321 111233556666666666666666554443321 1111 111 12
Q ss_pred ---HHHHHHHHhcCCHhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 329 ---NSMIINYGKARLQGKAEYVFQKMT----AMKYTPS-FITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 329 ---~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
.-|..++...|....|.+.-++.. ..|-.+. ......+.+.|-..|+.+.|+.-|+...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 122334455555555555554433 2332221 2334556667777777777776666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1 Score=45.95 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=37.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 230 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (500)
+.+.|++++|...|-+-+.. ++|. .+|.-|.....+.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 34455555555555443321 1211 2333344444445555555555555554 444445555555555555555
Q ss_pred HHHHHH
Q 010807 310 EQVFKS 315 (500)
Q Consensus 310 ~~~~~~ 315 (500)
.++.+.
T Consensus 451 ~efI~~ 456 (933)
T KOG2114|consen 451 TEFISK 456 (933)
T ss_pred HHHHhc
Confidence 444443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.97 E-value=4.1 Score=35.89 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERC-KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 178 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
|-...|+..+..+ +.|++++|.+.|+.+...... +-...+.-.++.++.+.++++.|+..+++....-+.....
T Consensus 33 p~~~LY~~g~~~L-----~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTEL-----QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 5556677766666 778888888888888754311 1224455567778888899999999888877654433334
Q ss_pred HHHHHHHHHh
Q 010807 257 TYNGVMDAYG 266 (500)
Q Consensus 257 ~~~~ll~~~~ 266 (500)
-|..-|.+++
T Consensus 108 dY~~YlkgLs 117 (254)
T COG4105 108 DYAYYLKGLS 117 (254)
T ss_pred hHHHHHHHHH
Confidence 4555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.8 Score=34.50 Aligned_cols=75 Identities=8% Similarity=0.000 Sum_probs=55.6
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYI-ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
...-+.|+|++|++.|+.+..+-.+. -....--.++.+|.+.+++++|...+++.++....--..-|...+.+++
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34446799999999999998874222 1234566789999999999999999999998644333455666666665
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.81 Score=41.11 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN-----MGVTPDSSTYKL 435 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 435 (500)
.++..++..+..+|+.+.+.+.++++.... +.+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555566666666666666666666553 33555666666666666666666666655443 344454444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.80 E-value=4.9 Score=36.18 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=34.1
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN 173 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 173 (500)
+...+++.+|...|+...... +-+...--.++..|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344567777777777666653 33445556667777777777777777777654
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.21 E-value=4.1 Score=33.56 Aligned_cols=133 Identities=12% Similarity=0.153 Sum_probs=80.2
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Q 010807 131 VFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKM 210 (500)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~ 210 (500)
.++.+.+.+ ++++...|..+++.+.+.|++.... .+...++-+|.......+-.+... ...-..-|++++.++
T Consensus 16 YirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 16 YIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHHHh
Confidence 334444444 7788888999999999888866443 444556666666665555444321 223455666666666
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 211 KGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 211 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.. .+..++..+...|++-+|+++....... +......++.+..+.++...-..++.-..+
T Consensus 89 ~~---------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 GT---------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hh---------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 52 3456677777888888888887665322 222234456666666665555555555444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.21 E-value=5.1 Score=34.62 Aligned_cols=199 Identities=13% Similarity=0.003 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII- 333 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~- 333 (500)
..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444444445555555555544444431 112233334444444444445555555555544432221 111111111
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKY--TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (500)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555433110 0122222333333444455555555555544432110234444444555555555
Q ss_pred hhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 412 TEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+.|...+...... .|+ ...+..+...+...|..+.+...+.+..
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554443 122 2233333333334444555554444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=3.2 Score=32.26 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=62.0
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCH---HHHHHHHHHHhccC
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPSF---ITYECIITMYGYCD 374 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~---~~~~~li~~~~~~~ 374 (500)
+....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+-+++..+. |-+ +. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456678888888888877765 2336777888888888888888888888777763 322 22 22333344566778
Q ss_pred CHHHHHHHHHHHHHCC
Q 010807 375 NVSRAREIFDELSKLG 390 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~ 390 (500)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888777766
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.3 Score=39.92 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=61.3
Q ss_pred HHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 010807 97 VRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN--- 173 (500)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 173 (500)
+..++.+.+..-......+++.+...++++.+...++.+.... +-+...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 141 V~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 141 VLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 3333344444334444556777777778888888888777765 55777788888888888888888888887765
Q ss_pred --cCCCCCHHHHHHHHHH
Q 010807 174 --SGCRPDPSVYNALITA 189 (500)
Q Consensus 174 --~g~~p~~~~~~~li~~ 189 (500)
.|+.|...+.......
T Consensus 219 edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 219 EELGIDPAPELRALYEEI 236 (280)
T ss_pred hhcCCCccHHHHHHHHHH
Confidence 4777776666554444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=2.6 Score=38.48 Aligned_cols=154 Identities=6% Similarity=-0.081 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALA 201 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~ 201 (500)
.|++.+|-..++++.+. +|.|.-.++-.=.++..+|+.+.-...++++.-. -.+|...|..+=..|+-.-...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35666666666666665 5667777777777777777777777777766532 12343333332222221112666677
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA---PDIYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
+|.+.-++..+.. +-|...-.+....+...|+..++.++..+-...--. .-...|=...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777777766543 456666666777777777777777766543221100 00111112222344557777777777
Q ss_pred HH
Q 010807 279 SR 280 (500)
Q Consensus 279 ~~ 280 (500)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 64
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.94 E-value=3.1 Score=33.10 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 372 YCDNVSRAREIFDELSKLGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+.|++++|.+.|+.+...-+ +.....--.|+.+|.+.|++++|...+++.++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34555555555554444211 11122333444455555555555555555444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=9.4 Score=36.90 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=61.5
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
..+|.++-+...+.+ +-|......+..+....++++.|..+|++....++. ...+|-.....+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345555666666654 446666666666666667777777777777765432 344555555556667777777777777
Q ss_pred HHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 421 SHNMGVTPD---SSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 421 m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
..+. .|. .......+..|+..+ .+.|..++
T Consensus 398 alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 398 SLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred Hhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 5543 232 222333344555554 34444433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.63 E-value=4.8 Score=32.78 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=24.8
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFIT-YECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
..++.+++..++.-+.-. .|.... -..-...+...|++++|..+|+++.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 445566666666555542 233211 112223344556666666666665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.62 E-value=3.4 Score=36.68 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhccCCHHHH
Q 010807 304 QAFDKMEQVFKSLMHSKEK--PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPS-FITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~-~~~~~~li~~~~~~~~~~~A 379 (500)
|++..|...|...++..+. -....+..|..++...|+++.|..+|..+.+.- -.|. ...+--|.....+.|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 4455555555555443221 112233344455555555555555554444321 0111 23333444444445555555
Q ss_pred HHHHHHHHHC
Q 010807 380 REIFDELSKL 389 (500)
Q Consensus 380 ~~~~~~~~~~ 389 (500)
..+|+++.+.
T Consensus 235 ~atl~qv~k~ 244 (262)
T COG1729 235 CATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=40.19 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=25.8
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+.++++.++..=+..|+-||..+++.+++.+.+.+++.+|..+.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.48 Score=29.03 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
..+...|...|++++|+++|+++++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.38 E-value=16 Score=38.22 Aligned_cols=223 Identities=12% Similarity=0.062 Sum_probs=123.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHH-HHhhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 010807 230 CAQARNVDQVNALFKELHESILAPDIY-------TYNGVMD-AYGKNGMIKEMESVLSRMKSN----QCKPDIITFNLLI 297 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~li 297 (500)
.....++++|..++.++...-..|+.. .++.+-. .....|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345788999999998876543333221 2333322 223468889988888776653 2334566777888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHH---HHHH--HHHHhcCCHh--HHHHHHHHHHhC-----CC-CCCHHHHH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTF---NSMI--INYGKARLQG--KAEYVFQKMTAM-----KY-TPSFITYE 364 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li--~~~~~~~~~~--~a~~~~~~m~~~-----~~-~~~~~~~~ 364 (500)
.+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +.+..+...... +. .+-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999988776554222233332 2222 2244556322 222333332221 10 12234455
Q ss_pred HHHHHHhccCCHHHHHHH----HHHHHHCCCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHhCC----CCCCHHHHH
Q 010807 365 CIITMYGYCDNVSRAREI----FDELSKLGKDMKVSTL--NAMLEAYCMNGLPTEADLLFENSHNMG----VTPDSSTYK 434 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~ 434 (500)
.+..++.+ ++.+..- +.-.......|-..-+ ..|+.++...|+.++|...++++.... ..++..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 56666555 3333322 2222222222222222 256778888999999999988876543 233333333
Q ss_pred HHHHH--HHHcCCHHHHHHHHHH
Q 010807 435 LLYKA--YTKANMKELVQKLLKR 455 (500)
Q Consensus 435 ~li~~--~~~~g~~~~a~~~~~~ 455 (500)
..++. ....|+.+.+...+.+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 33432 2457888887777665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.37 E-value=13 Score=37.03 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+..+|..-+..-.+.|+++.+.-+|+...-. +..-...|-..+.-....|+.+-|..++....+.-++-...+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456666677777778888887777776421 111122333344444445777777777766655443322222222222
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhhHH---HHHHHHHhCCCCCC--HHHHHHHHH-HHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKV-STLNAMLEAYCMNGLPTEAD---LLFENSHNMGVTPD--SSTYKLLYK-AYT 441 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~--~~~~~~li~-~~~ 441 (500)
..-..|+++.|..+++.+...- |+. ..-..-+....+.|+.+.+. +++.........+. ...+....+ .+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 2345689999999999988753 332 22223344455677777776 33333332211111 122222222 234
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCC
Q 010807 442 KANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 482 (500)
-.++.+.|..++.+|.+. ++++...|.++++-+...+...
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCcch
Confidence 467889999999988864 5666777888887776665443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.31 E-value=12 Score=36.51 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=34.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+..++-+.|+.++|.+.|++|.+.... -+..+...|+.++...+.+.++..++.+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3444455666667776666666553221 133455566666666677777666666654
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.17 E-value=7.5 Score=33.97 Aligned_cols=207 Identities=11% Similarity=0.091 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...|.-...+|....++++|...+.+..+. .+-|...|. ....++.|.-+.++|.+. .--+..|+-....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 445666777888888888888877665431 221222221 122345666666666543 1123345666667
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHhccC
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM---K--YTPSFITYECIITMYGYCD 374 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~~ 374 (500)
|..+|..+.|-..+++.-+. ...-++++|+++|++.... + ...-...+..+-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 77777777666555543221 1122334444444333221 0 0111223344455566666
Q ss_pred CHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCH
Q 010807 375 NVSRAREIFDELSK----LGKDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNMG---VTPDSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 375 ~~~~A~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~ 446 (500)
.+++|-..+.+-.. ..--++ -..|-..|-.|....++..|...++.--+.+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 66665544433221 000111 2335555666667778888888888743322 133567788888887 56777
Q ss_pred HHHHHHH
Q 010807 447 ELVQKLL 453 (500)
Q Consensus 447 ~~a~~~~ 453 (500)
+++..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 7665543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.62 Score=28.49 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
+|..+...|...|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555666666666666666666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.12 E-value=4.6 Score=33.93 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC-CHH------
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP-DII------ 291 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~------ 291 (500)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+....--.+ |..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577788888888888888888888877644333 3445667777777788887777777655431111 111
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.|..+ .+...+++..|-+.|-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 11221 123456777776666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.8 Score=36.36 Aligned_cols=97 Identities=10% Similarity=0.083 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM---GVTPDSSTYKL 435 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ 435 (500)
..+..+...|++.|+.+.|.+.|.++.+....+ -...+-.+|......|++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345667777777777777777777776643322 2345566667777777777777766665432 11122221111
Q ss_pred HHH--HHHHcCCHHHHHHHHHHHH
Q 010807 436 LYK--AYTKANMKELVQKLLKRME 457 (500)
Q Consensus 436 li~--~~~~~g~~~~a~~~~~~m~ 457 (500)
... ++...|++..|-+.|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 222 2345678888777776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=16 Score=37.13 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHccCCCCCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHc
Q 010807 125 WLQCLEVFRWMQKQRWYIADTGIYSKLI----AV-MGKKGQTRLAMWLFSEMRN-------SGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 125 ~~~A~~~~~~~~~~~~~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~ 192 (500)
...|.+.++...+.+ +...-..+. .+ +....+++.|+..|....+ .| ......-+-.+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 345777777776665 222222222 22 3455677788887777765 33 22233334444443
Q ss_pred CcchHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----
Q 010807 193 TRDKAK-ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-ARNVDQVNALFKELHESILAPDIYTYNGVMDAYG---- 266 (500)
Q Consensus 193 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---- 266 (500)
...... +.+.|+.+|.+..... .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 221122 5566666666665422 3333322222211111 13455666666666655532 11111111111
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 010807 267 KNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~~ 285 (500)
...+.+.|..++++.-+.|
T Consensus 376 v~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc
Confidence 1234555666666655555
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.74 E-value=9 Score=33.95 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=119.5
Q ss_pred cCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 010807 174 SGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN--IVTYNILLRACAQARNVDQVNALFKELHES-- 249 (500)
Q Consensus 174 ~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-- 249 (500)
.+-+||+..-|....+-. -+....++|+.-|++..+..|-+.+ ....-.++..+.+.+++++....|.+|..-
T Consensus 20 s~sEpdVDlENQYYnsK~---l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk 96 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKG---LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK 96 (440)
T ss_pred cCCCCCcchHhhhhcccc---ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 344666655444332221 1445677888888888765443222 223445788888899999988888887531
Q ss_pred -C--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC--CCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010807 250 -I--LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN--QCKPDII----TFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 250 -g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (500)
. -.-+..+.|.+++...-..+.+-..++++.-... .-+ |.. |-+-|...|...+++.+..++++++...-
T Consensus 97 SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 97 SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 1 1234556777777766666655554444432211 001 111 22456777888888888888888875431
Q ss_pred CC-----------CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHH-----HhccCCHHHHHHH
Q 010807 321 EK-----------PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITM-----YGYCDNVSRAREI 382 (500)
Q Consensus 321 ~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~-----~~~~~~~~~A~~~ 382 (500)
.. --...|..-|..|....+-.+...++++..... .-|.+.... +|+- +.+.|++++|..-
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhH
Confidence 11 123467777888888877777888888766532 234444333 3333 3456778777643
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.57 E-value=17 Score=36.94 Aligned_cols=254 Identities=14% Similarity=0.106 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhhcC---CCCCCCHHHHHHHHHHHHHcC--
Q 010807 161 TRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT-RDKAKALAKALGYFQKMKGM---ERCKPNIVTYNILLRACAQAR-- 234 (500)
Q Consensus 161 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~g-- 234 (500)
...|.++++...+.| +...-..+..++... .....+.+.|+.+|..+... .-..-+....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 567888888888765 333333333333322 22667899999999988541 000113335566777777643
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--ccCCHHH
Q 010807 235 ---NVDQVNALFKELHESILAPDIYTYNGVMDAYGK-NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG--KRQAFDK 308 (500)
Q Consensus 235 ---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~~~~~~ 308 (500)
+.+.|..++...-+.|.. +...+-..+..... ..+...|.++|...-..|.. ....+.+++...+ -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 667799999888887654 44433333222222 34678999999999888865 3333333333222 3457889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH-HH---Hhc----cCCHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII-TM---YGY----CDNVSRAR 380 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~---~~~----~~~~~~A~ 380 (500)
|..++.+..+.|. |...--...+..+.. +..+.+...+..+.+.|... ..+-...+ .. ... ..+.+.+.
T Consensus 383 A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 383 AFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999988873 332222233344444 77888887777777766332 11111111 11 111 22456666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHhCC
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMN----GLPTEADLLFENSHNMG 425 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~ 425 (500)
..+......| +......|..+|... .+++.|...+......+
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 6666666655 455556666555443 24666666666655543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.51 Score=27.38 Aligned_cols=26 Identities=12% Similarity=0.173 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMR 172 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~ 172 (500)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999855
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.57 Score=27.17 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 223 YNILLRACAQARNVDQVNALFKEL 246 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m 246 (500)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666677777777777776663
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.77 E-value=8.3 Score=31.78 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=72.0
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHhcCCh
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS-TLNAM--LEAYCMNGLP 411 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 411 (500)
.+.+..++|+.-|..+.+.|...-.. .-..........|+-..|...|+++-.....|-+. -.-.| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566677777777776665332111 11223334556677777777777776644333222 11111 1234566777
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 010807 412 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN 464 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 464 (500)
+....-.+.+-..+-+.....-..|.-+-.+.|++..|.++|+.+......|.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 77766666655544333444455566666777777777777777766544443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.71 E-value=7.2 Score=36.15 Aligned_cols=225 Identities=12% Similarity=0.010 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhCC-CCCCHHHHHHHHHHHhhcCC
Q 010807 197 AKALAKALGYFQKMKGM-ERCKPNIVTYNILLRACAQARNVDQVNALFKE----LHESI-LAPDIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~----m~~~g-~~p~~~~~~~ll~~~~~~g~ 270 (500)
..+.++|+..+.+.... .....-..+|..+..+.++.|.+++++..--- ..+.. -..-...|..+-+++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666655554421 11122234566666666666666665543221 11110 00001223333333333333
Q ss_pred HHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCH
Q 010807 271 IKEMESVLSRMKSN-QCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-----KPTLPTFNSMIINYGKARLQ 341 (500)
Q Consensus 271 ~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~ 341 (500)
+.+++.+-+.-... |..| .-....++..++...+.++++++.|+...+.-. .....+|..|...|.+..|+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 33343333332222 2222 111223344555556666666666665543211 11234566666666666666
Q ss_pred hHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHH----HHHHHHHHh
Q 010807 342 GKAEYVFQKMTA----MKYTPSFITY-----ECIITMYGYCDNVSRAREIFDELSKLGKD-MKVSTL----NAMLEAYCM 407 (500)
Q Consensus 342 ~~a~~~~~~m~~----~~~~~~~~~~-----~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~----~~li~~~~~ 407 (500)
++|.-+..+..+ .++.-=..-| ..+.-++-..|++..|.+.-++..+..+. -|..++ -.+.+.|-.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 666655544332 1211111112 22233444555555555555544431110 022222 234445555
Q ss_pred cCChhhHHHHHHHH
Q 010807 408 NGLPTEADLLFENS 421 (500)
Q Consensus 408 ~g~~~~A~~~~~~m 421 (500)
.|+.+.|+.-|+..
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 66666665555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.63 E-value=3.7 Score=40.59 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
..+.++..+-+.|..++|+++ .+|...--- ... +.|+++.|.++-.+.. +..-|..|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe---lal----~lgrl~iA~~la~e~~-------s~~Kw~~L 672 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQRFE---LAL----KLGRLDIAFDLAVEAN-------SEVKWRQL 672 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhhhh---hhh----hcCcHHHHHHHHHhhc-------chHHHHHH
Confidence 456667777777777766654 222221111 111 5566777766655543 45567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
.++..+.+++..|.+.|....+ |..|+-.+...|+.+....+-....+.|.. | ...-+|...|++
T Consensus 673 g~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~ 737 (794)
T KOG0276|consen 673 GDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDY 737 (794)
T ss_pred HHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCH
Confidence 7777777887777777765543 345566666666666555555555555433 2 222345556777
Q ss_pred HHHHHHHHH
Q 010807 307 DKMEQVFKS 315 (500)
Q Consensus 307 ~~a~~~~~~ 315 (500)
+++.+++.+
T Consensus 738 ~~C~~lLi~ 746 (794)
T KOG0276|consen 738 EECLELLIS 746 (794)
T ss_pred HHHHHHHHh
Confidence 777766654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.0094 Score=48.33 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=26.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 349 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (500)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444555555555555555544444445555555555555555455554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.55 E-value=4.2 Score=36.79 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
+.++++-++..=++.|+-||.++++.+|+.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555444444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.53 E-value=18 Score=35.29 Aligned_cols=166 Identities=7% Similarity=0.094 Sum_probs=97.5
Q ss_pred cchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--
Q 010807 109 SEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADT-GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNA-- 185 (500)
Q Consensus 109 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-- 185 (500)
...+..++...-+..+.+.-++.-.+..+.. ||- ..|..|.. -......+|+++|++..+.|- ..+..
T Consensus 168 ~r~Aq~IMq~AWRERnp~aRIkaA~eALei~---pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~lg~s~ 238 (539)
T PF04184_consen 168 LRPAQEIMQKAWRERNPQARIKAAKEALEIN---PDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASLGKSQ 238 (539)
T ss_pred cCHHHHHHHHHHhcCCHHHHHHHHHHHHHhh---hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhhchhh
Confidence 3456677777777777777776666666542 332 22322222 234557888899888776431 01100
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 010807 186 LITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILA-PDIYTYNGVMDA 264 (500)
Q Consensus 186 li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~ 264 (500)
... ..| ..++.... ....+-..+-..+...+.+.|+.++|++.|.+|.+.... -+......|+.+
T Consensus 239 ~~~-------~~g------~~~e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 239 FLQ-------HHG------HFWEAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hhh-------ccc------chhhhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 000 000 01111111 112223334455777778889999999999999765432 244577889999
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLI 297 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li 297 (500)
+...+.+.++..++.+..+...+ .-..+|+..+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 99999999999999998654332 2344566544
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=18 Score=35.09 Aligned_cols=80 Identities=8% Similarity=-0.050 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
.+|.+..++..+.+.. |......+..+....++++.|...|++....++. ...+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555554433 5555555555555555566666666665553222 3344444444445556666666666654
Q ss_pred Hh
Q 010807 352 TA 353 (500)
Q Consensus 352 ~~ 353 (500)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 44
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.96 E-value=8.8 Score=30.78 Aligned_cols=50 Identities=14% Similarity=0.021 Sum_probs=21.6
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
.++.+++..++..|.-. .|+.. .-..-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555442 22211 1111222334455555555555555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.92 E-value=17 Score=32.73 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRFF 468 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 468 (500)
.+++.....|..+|.+.+|.++-++..... +.+...+..|++.++..||--.+.+.+++|.+ .|+..+...+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 345566678899999999999999988765 56788889999999999998888888888764 3777766543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.64 E-value=18 Score=32.66 Aligned_cols=119 Identities=10% Similarity=0.081 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN--VDQVNALFKELHE-SILAPDIYTYNGVMDAYGKNGMIK 272 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~ 272 (500)
....+.+|+.+|+.......+-.|..+...+++......+ ...-.++.+-+.. .|-.++..+...++..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 4555777777777443212345566666666666655222 2222223333322 234556666666777777777777
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 273 EMESVLSRMKSN-QCKPDIITFNLLIDSYGKRQAFDKMEQVFK 314 (500)
Q Consensus 273 ~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 314 (500)
+..++++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 777776665554 444566667777777777777665555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.43 E-value=0.66 Score=26.55 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHhcCChhhH
Q 010807 394 KVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 394 ~~~~~~~li~~~~~~g~~~~A 414 (500)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 344444444445554544444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.26 E-value=23 Score=33.43 Aligned_cols=66 Identities=12% Similarity=-0.058 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---SFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
....+|..+...+.+.|.++.|...+..+...+... +....-.-....-..|+-++|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888899999999999999998888754211 333444455666678888999998888877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.76 E-value=37 Score=35.14 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=47.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C-----------hhhHHHHHHHHHhCC-----C-
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-L-----------PTEADLLFENSHNMG-----V- 426 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~-----------~~~A~~~~~~m~~~~-----~- 426 (500)
....-+...|++++|..+|....+.+ .-....|.++.-..... . ...|..+.+.....+ +
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 33445667888888888887666432 11334444443333222 2 233444444433321 1
Q ss_pred CCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCCH
Q 010807 427 TPDSSTYKLLYKA-----YTKANMKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 427 ~p~~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~~ 465 (500)
..+..|+..|++. +.+.|++++|++.++ +.++.|..
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~---~L~liP~~ 537 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDIIE---KLDLIPLD 537 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH---HTT-S-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---hCCCCCCC
Confidence 1234566666553 367899999987665 44677743
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.7 Score=25.85 Aligned_cols=27 Identities=37% Similarity=0.383 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 344555555555555555555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.61 E-value=1 Score=25.76 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAM 165 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~ 165 (500)
+.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 668889999999999999999886
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.7 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 398 LNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
|..+..+|...|++++|+..|++.+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=86.21 E-value=3.1 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=28.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 440 YTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
..+.|-..++..++++|.+.|+..+...|..+++.+
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346777778888888888888888888888877654
|
This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.20 E-value=0.24 Score=40.04 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
+..+.+.+.......+++.+...+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444444444444455544443333344555555555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.10 E-value=5.8 Score=34.00 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM--GVTPDSSTYKLLYKA 439 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 439 (500)
|.+..++.+.+.+.+++|+...++-.+.. +-|...-..++..||-.|++++|..-++-.-.. ...+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556777888899999999998777764 346777788999999999999998766654432 234556777777765
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.70 E-value=2 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 398 LNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 398 ~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
|..+..+|...|++++|++.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.63 E-value=85 Score=37.23 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=90.0
Q ss_pred ccCCHHHHHHHHHHH----HHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcch
Q 010807 121 KSDKWLQCLEVFRWM----QKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 196 (500)
+.+.|.+|+-.++.- .++ ......|..+...|+..+++|...-+...-. -+...+..++... .
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~---~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~~e-----~ 1461 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEK---ETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILEHE-----A 1461 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHHHH-----h
Confidence 456778888888772 222 1123446666669999999998887776422 2334444444433 6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHhhcCCHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG-VMDAYGKNGMIKEME 275 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~a~ 275 (500)
.|++..|...|+.+.+.+ ++...+++-++......|.++.++-..+-.... ..+....+++ =+.+--+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 788999999999998643 444677887887777788888777755544432 1222223332 234445677777777
Q ss_pred HHHH
Q 010807 276 SVLS 279 (500)
Q Consensus 276 ~~~~ 279 (500)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 7665
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.57 E-value=10 Score=32.20 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~A 414 (500)
+|+..+..|+..|.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.29 E-value=52 Score=34.45 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=50.8
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
.|.+.|++++|...|-..... ..| ..+|.-|.....+.+-..+++.+.+.|+.-. ..-..|+.+|. +.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~--le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~-dhttlLLncYi----Kl 444 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF--LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYI----KL 444 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc--CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHH----Hh
Confidence 345568888888777554432 222 2355556666667777777888887776543 33456777887 55
Q ss_pred HHHHHHHHHHHHhh
Q 010807 198 KALAKALGYFQKMK 211 (500)
Q Consensus 198 ~~~~~a~~~~~~~~ 211 (500)
++.++..++.+...
T Consensus 445 kd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 445 KDVEKLTEFISKCD 458 (933)
T ss_pred cchHHHHHHHhcCC
Confidence 55666655555544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.26 E-value=10 Score=27.73 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
++.+-++.+....+.|++.....-++||.+.+|+..|.++|+-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666665444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.98 E-value=2.7 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELH 247 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~ 247 (500)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 455666666666666666666666553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.94 E-value=3.1 Score=23.39 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
.+|..+...+...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788888899999999999999888774
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.90 E-value=14 Score=27.46 Aligned_cols=46 Identities=9% Similarity=0.134 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+...-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555556666666666666776666777777766666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.47 E-value=21 Score=29.19 Aligned_cols=19 Identities=16% Similarity=0.031 Sum_probs=9.5
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 010807 405 YCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~ 423 (500)
+...|++.+|+.+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.22 E-value=26 Score=30.17 Aligned_cols=180 Identities=14% Similarity=0.067 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
.|-..-|.--|.+..... +.-+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-|. +.-.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 344444444455544321 22356778787778888888888888888777654433333333332 334577777776
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 277 VLSRMKSNQCK-PDIITFNLLIDSYGKRQAFDKMEQ-VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 277 ~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
-+...-+.+.. |-...|--++. ..-++.+|.. +.++... .|..-|..-|..|.-..-.+ ..+++.+.+.
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISE--ETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccH--HHHHHHHHhh
Confidence 66665554322 22222322221 2234444433 2333322 23333433333332211111 1222333221
Q ss_pred CCCC-------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 355 KYTP-------SFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 355 ~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
. .- -..||--+..-+...|++++|..+|+-.+..
T Consensus 226 a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 226 A-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1 11 1345555666666667777777776665553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.98 E-value=39 Score=31.91 Aligned_cols=65 Identities=14% Similarity=-0.009 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
...++..+...+.+.|.++.|...+..+...+... +....-.-....-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44667777788888888888888888877643211 222233334455566777888888777765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.58 E-value=2.5 Score=25.86 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=13.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4455555555555555555555433
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.45 E-value=3.9 Score=22.84 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNS 174 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 174 (500)
..|..+...+.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35677888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.67 E-value=52 Score=32.40 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
..|-...-+++..+..+..+.-+..+-.+|...| -+...|..++.+|..+ ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3344445555555555555555555555555543 2445555556655555 445555566655555433 33333444
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKP-----TLPTFNSMIINYGKARLQGKAEYVFQKMTA-MKYTPSFITYECIITMY 370 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~ 370 (500)
...|.+ ++...+..+|.+....-++. -...|..++..- ..+.+....+...+.. .|..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444433 55555555555544331110 011233332211 2233444444444433 12222233334444445
Q ss_pred hccCCHHHHHHHHHHHHHCC
Q 010807 371 GYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~ 390 (500)
....++++|++++..+.+.+
T Consensus 216 s~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 216 SENENWTEAIRILKHILEHD 235 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc
Confidence 55555555555555555543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.50 E-value=65 Score=33.45 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=82.8
Q ss_pred HHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc
Q 010807 116 FEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD 195 (500)
Q Consensus 116 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 195 (500)
++-+-+.+.+++|+++.+..........-...+...|..+.-.|++++|-.+.-.|.. -+...|...+.-+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~---- 434 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFA---- 434 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhc----
Confidence 4555566888999888777554321111346788899999999999999888888764 24444444444333
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------hCCCCCCHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELH-----------------ESILAPDIYTY 258 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-----------------~~g~~p~~~~~ 258 (500)
..+. -..++.-++. .....+...|..++..+.. .+...-.++..+.. +..-+ +...-
T Consensus 435 e~~~---l~~Ia~~lPt-~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~ 508 (846)
T KOG2066|consen 435 ELDQ---LTDIAPYLPT-GPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALL 508 (846)
T ss_pred cccc---cchhhccCCC-CCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHH
Confidence 1111 1222222222 1112345567777776666 23222222221110 00011 11222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 010807 259 NGVMDAYGKNGMIKEMESVLSRMK 282 (500)
Q Consensus 259 ~~ll~~~~~~g~~~~a~~~~~~m~ 282 (500)
..|...|...+++++|+.++-...
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 336667777788888877776655
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.88 E-value=39 Score=33.88 Aligned_cols=104 Identities=21% Similarity=0.134 Sum_probs=76.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 010807 152 IAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231 (500)
Q Consensus 152 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 231 (500)
.....+.|+.+.|.++..+. -+..-|..|-.+.. ..+++..|.+.|.+... |..|+-.+.
T Consensus 644 Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al----~~~~l~lA~EC~~~a~d----------~~~LlLl~t 703 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL----SAGELPLASECFLRARD----------LGSLLLLYT 703 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh----hcccchhHHHHHHhhcc----------hhhhhhhhh
Confidence 34556778888888776654 36678888888888 77789999998888764 456777788
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010807 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRM 281 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 281 (500)
..|+-+....+-....+.|.. |....+|...|+++++.+++.+-
T Consensus 704 ~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 704 SSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 888887777777777766643 34455677789999998887654
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.56 E-value=36 Score=29.79 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=43.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
|..|...|++..|-+...++-+. ...+..-+..-|..|.+.+++-...+.-. .-...+--+...-+..+++
T Consensus 100 ieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ees~s--------sANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEESVS--------SANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchhhhh--------hHHHHHHHHHHHHHHHHHH
Confidence 44566667776665554443321 22233444444444433333222111110 1111222233334567888
Q ss_pred HHHHHHHHHHHHCCCCCCH
Q 010807 377 SRAREIFDELSKLGKDMKV 395 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~ 395 (500)
.+|+++|+++....+..+.
T Consensus 171 ~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHhccchH
Confidence 9999999988876554333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=81.53 E-value=76 Score=33.57 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=120.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC---CCCCCCHHHH
Q 010807 154 VMGKKGQTRLAMWLFSEMRNSGCRPDP-------SVYNALITAHLHTRDKAKALAKALGYFQKMKGM---ERCKPNIVTY 223 (500)
Q Consensus 154 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 223 (500)
......++++|..++.++...-..|+. ..++.+-.-... ..|+.++|.++-+..... ....+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val---~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVAL---NRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 345678899999999887654222222 134433322222 345566666665554321 2345567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHhhcCCH--HHHHHHHHHHHhC-----CC-CCCH
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM-----DAYGKNGMI--KEMESVLSRMKSN-----QC-KPDI 290 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-----~~~~~~g~~--~~a~~~~~~m~~~-----~~-~~~~ 290 (500)
.++..+..-.|++++|..+..+..+.--..+...+.... ..+...|+. .+.+..+...... .. .+-.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 888889999999999998887766543333444443332 234556632 2333333333221 11 1123
Q ss_pred HHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCHHHH
Q 010807 291 ITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPT--FNSMIINYGKARLQGKAEYVFQKMTAMKYT----PSFITY 363 (500)
Q Consensus 291 ~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~ 363 (500)
.++..+..++.+. +...++..-+.--......+-... +..|+..+...|+.++|...+.++...... ++..+.
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 3445555555551 111222222222222222222222 236677788899999999988887664322 232222
Q ss_pred HHHH--HHHhccCCHHHHHHHHHH
Q 010807 364 ECII--TMYGYCDNVSRAREIFDE 385 (500)
Q Consensus 364 ~~li--~~~~~~~~~~~A~~~~~~ 385 (500)
...+ ......|+.+.+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 2223 234557787777766554
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.38 E-value=48 Score=30.53 Aligned_cols=135 Identities=12% Similarity=0.070 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh----CCCCCC
Q 010807 215 RCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS----NQCKPD 289 (500)
Q Consensus 215 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~~ 289 (500)
.++.|...++.|... +...+++-.+..++..+. |-.--...+......||+.|+.+.|++.+.+..+ .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 345555555555433 122233333333333332 1111224455556678888888888777765443 466777
Q ss_pred HHHHHHHH-HHHhccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 290 IITFNLLI-DSYGKRQAFDKMEQVFKSLMHSKEKPTL----PTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 290 ~~~~~~li-~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
+..+..=+ -.|....-..+-++..+.+.+.|...+. .+|..+- |....++.+|..+|-+...
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 76665433 3344444445555555666666654332 2343322 3345677888877766554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=59 Score=31.69 Aligned_cols=215 Identities=11% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
.|...--..-|.--. ..|++-.|-+-+.... ...+.++.........+...|+++.+.+.+....+. +.....
T Consensus 286 ~~~~~~~~~si~k~~----~~gd~~aas~~~~~~l--r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~ 358 (831)
T PRK15180 286 QDQIREITLSITKQL----ADGDIIAASQQLFAAL--RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDS 358 (831)
T ss_pred CcchhHHHHHHHHHh----hccCHHHHHHHHHHHH--HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCch
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
+...++....+.|++++|..+-.-|....+. +...........-..|-++++...|+++...+.+.+....|.+-..-.
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~ 437 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQY 437 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecccee
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAM 401 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (500)
-..--.-.+....-++.. ..+.......+....+..+----...++++....-.....+...+
T Consensus 438 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (831)
T PRK15180 438 FNDGNAFSEAFHAGIQSQ--RLNDTFMETALSLAIKFSDELIFMHALEQLLRHESEFALTVLSTI 500 (831)
T ss_pred ccCcchHHHHHHhhhhhh--hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhHHHHHHhhh
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.21 E-value=5.6 Score=36.45 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.+-|.+.|.+++|+..|..-... .| |.+++..-..+|.+...+..|+.-....
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 34456666666666666655443 23 5555655556666666666555444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 78.3 bits (191), Expect = 2e-15
Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 20/262 (7%)
Query: 122 SDKWLQCLEVFRWMQKQR-----------WYIADTGIYSKLIAVMGKKGQTRLAMWLFSE 170
+W + LE + Q+ R + + ++ + V + ++A L
Sbjct: 23 CGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDC 82
Query: 171 MRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRAC 230
R + P L+ A + + C
Sbjct: 83 TRQAPESPWEEQLARLLQEAPGKLSLDVEQA-----PSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 231 AQARNVDQVNALFKELHESI---LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 287
+ + L H + YN VM + + G KE+ VL +K
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 288 PDIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346
PD++++ + G++ Q +E+ + + K ++ +A +
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 347 VFQKMTAMKYTPSFITYECIIT 368
V + P + ++
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 3e-14
Identities = 24/191 (12%), Positives = 58/191 (30%), Gaps = 7/191 (3%)
Query: 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYF 207
++L+ K + + + A L T L A
Sbjct: 95 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ----LPLAHHLL 150
Query: 208 QKMKGM--ERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAY 265
G +R + YN ++ A+ ++ + + ++ L PD+ +Y +
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
Query: 266 GKNGMIKEM-ESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 324
G+ E L +M K + +L+ + + +V + + P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 325 LPTFNSMIINY 335
+ ++ +
Sbjct: 271 PVNTSKLLRDV 281
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 4e-11
Identities = 34/322 (10%), Positives = 81/322 (25%), Gaps = 48/322 (14%)
Query: 162 RLAMWLFSEMRNSGCRPDPSVY--------NALITAHLHTRDKAKALAKAL-GYFQKMKG 212
R A L + R R + + + L+K + G +
Sbjct: 25 RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTR 84
Query: 213 MERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK 272
P LL+ ++D A + ++ L+ +
Sbjct: 85 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 273 EMESVLSRMKS---NQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN 329
+L + + +N ++ + ++ AF +
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE--------------------- 183
Query: 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA-REIFDELSK 388
YV + TP ++Y + G D + +++S+
Sbjct: 184 --------------LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448
G ++ +L + + P L + + +
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
Query: 449 VQKLLKRMEQNGIVPNKRFFLE 470
KL ++ + K+ +E
Sbjct: 290 YPKLHLPLKTLQCLFEKQLHME 311
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 65/562 (11%), Positives = 150/562 (26%), Gaps = 183/562 (32%)
Query: 32 FNQSSSQNYNFTHRHIPLSLRTRPRTGICCVWTRPRSKRGRKSEELESKELVRVLMRSFS 91
+ NY F P+ R + + ++ R + ++ + R
Sbjct: 83 VEEVLRINYKFLMS--PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR------- 133
Query: 92 DKEPLVRTLNKYVKVVRSEHCFLLFEELG--KS--------DKWLQCL---EVFRW---- 134
L + + +R L+ LG K+ +QC ++F W
Sbjct: 134 --LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLK 190
Query: 135 ----------MQKQRWYIADTGI-----YSKLIAVMGKKGQTRLAMWLFSEM-RNS---- 174
M ++ Y D +S I + Q L L S+ N
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 175 --------------GCR-----PDPSVYNALI---TAHLHTRDKAKAL--AKALGYFQKM 210
C+ V + L T H+ + L + K
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 211 KGM---------------------ERCKPNIVTYN-----------ILLRACAQARNVDQ 238
E + + T++ ++ + +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 239 VNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---QCKPDIITFNL 295
+F L S+ P + ++ + + ++ V++++ + +P T ++
Sbjct: 371 YRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 296 --------------------LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335
++D Y + FD S +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFD-----------SDDLIPPYLDQ------ 471
Query: 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 395
Y + S I + + + + ++ R +F + L + ++
Sbjct: 472 ----------YFY----------SHIGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKR 455
+ +N L L F + + + Y+ L A + ++ + L+
Sbjct: 510 DSTAWNASGSILNTL---QQLKFYKPY---ICDNDPKYERLVNAILD-FLPKIEENLI-C 561
Query: 456 MEQNGIV------PNKRFFLEA 471
+ ++ ++ F EA
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEA 583
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 1e-05
Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 10/217 (4%)
Query: 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322
D E ++ R S K +++ + D R ++K+ ++ L+ ++
Sbjct: 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353
Query: 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382
+ + +A +F+K T + + Y + S A +I
Sbjct: 354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413
Query: 383 FDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-- 440
F+ K D+ + A ++ +LFE G P + ++ +
Sbjct: 414 FELGLKKYGDI-PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-GEIWARFLA 471
Query: 441 ------TKANMKELVQKLLKRMEQNGIVPNKRFFLEA 471
A++ ++ ++ + ++
Sbjct: 472 FESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR 508
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 30/201 (14%), Positives = 65/201 (32%), Gaps = 8/201 (3%)
Query: 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK 322
D E ++ R S K +++ + D R ++K+ ++ L+ ++
Sbjct: 72 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 131
Query: 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382
+ + +A +F+K T + + Y + S A +I
Sbjct: 132 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 191
Query: 383 FDE-LSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441
F+ L K G + + A ++ +LFE G P + ++ +
Sbjct: 192 FELGLKKYGDIPEY--VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS-GEIWARFL 248
Query: 442 ----KANMKELVQKLLKRMEQ 458
+ K+ KR
Sbjct: 249 AFESNIGDLASILKVEKRRFT 269
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 500 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.56 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.0 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.94 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.94 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.93 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.73 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.68 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.52 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.49 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.39 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.37 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.32 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.24 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.24 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.18 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.18 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.16 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.1 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.1 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.08 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.96 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.95 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.93 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.9 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.85 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.85 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.83 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.79 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.67 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.5 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.44 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.42 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.39 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.31 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.21 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.72 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.58 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.38 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.24 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.76 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.64 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.62 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.51 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.39 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.34 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.32 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.15 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.14 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.04 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.25 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.02 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.86 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.75 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.62 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.59 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.74 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.32 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.25 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.4 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.35 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 84.98 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.77 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.57 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.51 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.97 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.54 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.98 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.65 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=286.76 Aligned_cols=404 Identities=11% Similarity=0.035 Sum_probs=336.8
Q ss_pred CCccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHH-----------------HcccCCHHHHHHHHHH
Q 010807 72 RKSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEE-----------------LGKSDKWLQCLEVFRW 134 (500)
Q Consensus 72 ~~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-----------------l~~~~~~~~A~~~~~~ 134 (500)
+.+...+|..+++.++...++...+..+...+...++.+.+..+++. +.+.|++++|+++|+.
T Consensus 96 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 35667889999998887777766666666777777766666555444 4567999999999985
Q ss_pred HHHcc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH---------
Q 010807 135 MQKQR--------------WYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAH--------- 190 (500)
Q Consensus 135 ~~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~--------- 190 (500)
+.... +.+.+..+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~ 253 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWD 253 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHH
Confidence 32221 123458899999999999999999999999998864 33 33333332111
Q ss_pred -------------------------HcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 191 -------------------------LHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKE 245 (500)
Q Consensus 191 -------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 245 (500)
+....+.|++++|+++|+++... +++..+|+.++.+|.+.|++++|.++|++
T Consensus 254 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (597)
T 2xpi_A 254 LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTK 330 (597)
T ss_dssp HHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11112789999999999999863 68999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH
Q 010807 246 LHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL 325 (500)
Q Consensus 246 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (500)
+.+.+.. +..++..++.+|.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+.
T Consensus 331 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 407 (597)
T 2xpi_A 331 ILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG 407 (597)
T ss_dssp HHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH
Confidence 9987654 77889999999999999999999999998654 3478899999999999999999999999998753 3378
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
.+|+.++.+|.+.|++++|..+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 899999999999999999999999999875 45788999999999999999999999999998753 4789999999999
Q ss_pred HhcCChhhHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 406 CMNGLPTEADLLFENSHNM----GVTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+...|...|
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 9999999999999999876 66787 7899999999999999999999999999875 447889999999999998
Q ss_pred CCCCCcc
Q 010807 480 AGSQSGS 486 (500)
Q Consensus 480 ~~~~~~~ 486 (500)
+++....
T Consensus 565 ~~~~A~~ 571 (597)
T 2xpi_A 565 IPGLAIT 571 (597)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8765443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=267.50 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------HH
Q 010807 238 QVNALFKELHESILAPDI-YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA---------FD 307 (500)
Q Consensus 238 ~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---------~~ 307 (500)
.+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344555666666654433 34677777777777777777777777777777777777777777766543 45
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 308 KMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
.|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 388 KLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 388 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=265.75 Aligned_cols=361 Identities=9% Similarity=-0.021 Sum_probs=281.9
Q ss_pred hHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-Hc--------------C
Q 010807 111 HCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMR-NS--------------G 175 (500)
Q Consensus 111 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~--------------g 175 (500)
....+...+.+.|++++|+.+|+.+... +++..+++.++.+|.+.|++++|+++|+++. .. |
T Consensus 119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (597)
T 2xpi_A 119 DAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccc
Confidence 3344556666667777777777766442 4567777777777777777777777777422 11 1
Q ss_pred CCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH-----------------------------
Q 010807 176 CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL----------------------------- 226 (500)
Q Consensus 176 ~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----------------------------- 226 (500)
..++..+|+.++.+|. +.|++++|+++|+++.... +.+...+..+
T Consensus 196 ~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYT----NLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred cchhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 1234667777777777 5566777777777776532 2223332222
Q ss_pred ---------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 227 ---------LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 227 ---------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+.+.. +..++..++
T Consensus 270 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 346 (597)
T 2xpi_A 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHL 346 (597)
T ss_dssp HHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHH
Confidence 44455667777777777776654 468888999999999999999999999999876543 677888999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVS 377 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 377 (500)
.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 347 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 347 ASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999988653 4478899999999999999999999999998753 446889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 378 RAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 378 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|++|.
T Consensus 425 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 425 QAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999875 3478999999999999999999999999998864 4578999999999999999999999999998
Q ss_pred HC----CCCCC--HHHHHHHHHHHhcCCCCCCCccc
Q 010807 458 QN----GIVPN--KRFFLEALETFSSSLAGSQSGSA 487 (500)
Q Consensus 458 ~~----g~~p~--~~~~~~ll~~~~~~g~~~~~~~~ 487 (500)
+. +..|+ ..+|..+...|.+.|+.+.....
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 76 77888 78999999999998887654433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-32 Score=264.81 Aligned_cols=208 Identities=13% Similarity=0.141 Sum_probs=178.6
Q ss_pred HHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC---------
Q 010807 201 AKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM--------- 270 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--------- 270 (500)
..+..+.+++.+ .+..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+.
T Consensus 7 s~~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 344555566654 444444 346888999999999999999999999999999999999999999987664
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
|.+.|+.||..||++||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+..+
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999988643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-25 Score=212.00 Aligned_cols=371 Identities=12% Similarity=0.043 Sum_probs=311.1
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLI 152 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 152 (500)
.|..++|...+..+++..|+....... +...+...|++++|...++...+.. +.+..+|..+.
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg 74 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVLLL---------------LSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLG 74 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHH
Confidence 456778888888887776655433322 2233445689999999999988764 67889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACA 231 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 231 (500)
.++.+.|++++|+..|+++.+. .| +...|..+..++. ..|++++|+..|+++.... +.+...+..+...+.
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALV----AAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----HHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 9999999999999999999875 35 4567888999998 7888999999999998642 445667888899999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (500)
..|++++|.+.|+++.+.... +..+|..+...+.+.|++++|...|+++.+.+.. +...+..+...+...|++++|+.
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999886543 6789999999999999999999999999987543 67889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 391 (500)
.|++.....+ .+..++..+..+|...|++++|...++.+.+.. +.+..+|..+...+.+.|++++|.+.|+++.+..
T Consensus 225 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 301 (388)
T 1w3b_A 225 AYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC- 301 (388)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9999887643 368899999999999999999999999999864 3457889999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLE 470 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ 470 (500)
+.+..+++.+...+.+.|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+. .|+ ...|..
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~ 378 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSN 378 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHh
Confidence 4578999999999999999999999999998863 446889999999999999999999999999864 454 344544
Q ss_pred HHHHHh
Q 010807 471 ALETFS 476 (500)
Q Consensus 471 ll~~~~ 476 (500)
+-..+.
T Consensus 379 lg~~~~ 384 (388)
T 1w3b_A 379 MGNTLK 384 (388)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-25 Score=211.59 Aligned_cols=352 Identities=9% Similarity=0.008 Sum_probs=305.3
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
.+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+...|..+...+. ..
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~----~~ 80 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK----ER 80 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH----HC
Confidence 3445799999999999998864 5677888889999999999999999999988763 457789999999999 88
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
|++++|+..|+++.... +.+..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.
T Consensus 81 g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 88999999999998642 456778999999999999999999999999886543 556777888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT 357 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 357 (500)
|+++.+.... +..+|..+..+|.+.|++++|+..|+++.+..+ .+...|..+...+...|++++|...+++..... +
T Consensus 158 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 9999887433 678899999999999999999999999998643 368889999999999999999999999998854 3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 358 PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
.+..++..+...|...|++++|.+.|+++.+.+. .+..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 4588999999999999999999999999998753 368899999999999999999999999998874 56889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 010807 438 KAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQSG 485 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~~ 485 (500)
..+.+.|++++|...++++.+.. +.+...+..+...+...|+.+...
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998642 345678888899998888765443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-21 Score=191.46 Aligned_cols=354 Identities=14% Similarity=0.076 Sum_probs=282.9
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 192 (500)
..+...+.+.|++++|+.+|+.+.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+..++.
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 334555667899999999999998863 5678999999999999999999999999999874 345778888888888
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 193 TRDKAKALAKALGYFQKMKGMERCKPNI---VTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIYT 257 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 257 (500)
..|++++|+..|+++.... +.+. ..+..+ ...+...|++++|+..|+++.+.... +..+
T Consensus 106 ---~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 179 (450)
T 2y4t_A 106 ---KQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAEL 179 (450)
T ss_dssp ---HTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred ---HcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 7778999999999998632 3334 566555 44489999999999999999886543 7889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH------
Q 010807 258 YNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM------ 331 (500)
Q Consensus 258 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 331 (500)
+..+..+|.+.|++++|.++|+++.+... .+..++..+..+|...|++++|+..|+++...... +...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHH
Confidence 99999999999999999999999987643 37889999999999999999999999999875332 45555555
Q ss_pred ------HHHHHhcCCHhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 332 ------IINYGKARLQGKAEYVFQKMTAMKYTPS-----FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 332 ------i~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
...|...|++++|...|+.+.+.. |+ ...+..+..++.+.|++++|...++++.+.. +.+..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998853 44 4578889999999999999999999998864 347899999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHHcC-----CHHHHHHHHHHH-HHC--C
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA------------YTKAN-----MKELVQKLLKRM-EQN--G 460 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~a~~~~~~m-~~~--g 460 (500)
+..+|...|++++|...|+++.+.. +-+...+..+..+ |...| +.+++.+.++++ .+. .
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999863 2245666666533 33334 556777777763 332 1
Q ss_pred CCCCH-------HHHHHHHHHHhcCCCCC
Q 010807 461 IVPNK-------RFFLEALETFSSSLAGS 482 (500)
Q Consensus 461 ~~p~~-------~~~~~ll~~~~~~g~~~ 482 (500)
..|+. ..|..+-.+|...++.+
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 12332 36777888887776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-21 Score=192.63 Aligned_cols=311 Identities=13% Similarity=0.018 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++. ..|++++|+..|+++.... +.+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~ 95 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIQLK--MDFTA 95 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC--CCcHH
Confidence 5567889999999999999999999999998763 346888888989898 7778999999999998643 55688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHhhcCCHHHHHHHHHHHHhCCC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDI---YTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQC 286 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~~ 286 (500)
.+..+...|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|+..|+++.+...
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999886432 33 455555 3448899999999999999988643
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 366 (500)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 366 (500)
.+...+..+..+|.+.|++++|+++|+++.+.. +.+..+|..+...|...|++++|...++.+.... +.+...+..+
T Consensus 175 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~ 251 (450)
T 2y4t_A 175 -WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY 251 (450)
T ss_dssp -TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 378889999999999999999999999998763 3478999999999999999999999999998753 3345555544
Q ss_pred ------------HHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 010807 367 ------------ITMYGYCDNVSRAREIFDELSKLGKDMK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430 (500)
Q Consensus 367 ------------i~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 430 (500)
...|...|++++|..+|+++.+.... + ...|..+..++.+.|++++|+..++++.... +.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 88899999999999999999985422 2 4578899999999999999999999988763 4478
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 010807 431 STYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRF 467 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 467 (500)
..|..+..+|...|++++|...++++.+ +.|+...
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 364 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQ 364 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHH
Confidence 9999999999999999999999999986 4565433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-20 Score=185.83 Aligned_cols=368 Identities=9% Similarity=-0.032 Sum_probs=291.6
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLI 152 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 152 (500)
.+...+|...+..++...++. .....+...+.+.|++++|+..|+.+.+.. +.+..+|..+.
T Consensus 19 ~g~~~~A~~~~~~al~~~p~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 80 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELKEDP----------------VFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRA 80 (514)
T ss_dssp TSCHHHHHHHHHHHHHHCCCH----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhcCccH----------------HHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHH
Confidence 355677777777777665431 112234445556799999999999998874 66788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC-----------------------------------------------------
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRPD----------------------------------------------------- 179 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------------------------------------------- 179 (500)
.++.+.|++++|...|+++.+.+...+
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 999999999999999999987642110
Q ss_pred -------------------------HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhc-----CCCC-------CCCHHH
Q 010807 180 -------------------------PSVYNALITAHLHTRDKAKALAKALGYFQKMKG-----MERC-------KPNIVT 222 (500)
Q Consensus 180 -------------------------~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~ 222 (500)
...+......+.... ..|++++|+..|+++.. .... +.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKR-SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSC-CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhh-hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 111111111122000 26889999999999876 3111 233567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
+..+...+...|++++|...|+++.+.... ...+..+...+...|++++|...++++.+.... +...+..+..+|..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHH
Confidence 888999999999999999999999887544 888999999999999999999999999887543 67788999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 382 (500)
.|++++|+..|++..+.... +...+..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999887443 67789999999999999999999999998854 34577889999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 383 FDELSKLGKD-MK----VSTLNAMLEAYCM---NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 383 ~~~~~~~~~~-~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
++++.+.... ++ ...+..+..+|.. .|++++|...++++.... +.+..++..+...+.+.|++++|...++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9998874322 11 4488999999999 999999999999998864 4467889999999999999999999999
Q ss_pred HHHHCCCCCCHHH
Q 010807 455 RMEQNGIVPNKRF 467 (500)
Q Consensus 455 ~m~~~g~~p~~~~ 467 (500)
+..+.. |+...
T Consensus 474 ~a~~~~--~~~~~ 484 (514)
T 2gw1_A 474 ESADLA--RTMEE 484 (514)
T ss_dssp HHHHHC--SSHHH
T ss_pred HHHHhc--cccHH
Confidence 998753 55433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-20 Score=184.72 Aligned_cols=356 Identities=8% Similarity=-0.043 Sum_probs=290.7
Q ss_pred HHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCc
Q 010807 115 LFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTR 194 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 194 (500)
.-..+.+.|++++|+..|+.+.+.. |+..+|..+..++.+.|++++|+..|+++.+.+ +.+...|..+..++.
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~--- 84 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE--- 84 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH---
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH---
Confidence 4455667899999999999999864 689999999999999999999999999999864 345678888888998
Q ss_pred chHHHHHHHHHHHHHhhcCCCC----------------------------------------------------------
Q 010807 195 DKAKALAKALGYFQKMKGMERC---------------------------------------------------------- 216 (500)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~---------------------------------------------------------- 216 (500)
..|++++|+..|+++......
T Consensus 85 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 -GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp -HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred -HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777899999999988653210
Q ss_pred -------------------CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCCC--------CCHHHHHHH
Q 010807 217 -------------------KPNIVTYNILLRACAQ---ARNVDQVNALFKELHE-----SILA--------PDIYTYNGV 261 (500)
Q Consensus 217 -------------------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~-----~g~~--------p~~~~~~~l 261 (500)
+.+...+......+.. .|++++|..+|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 0013333444444443 8999999999999987 3111 235677888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQ 341 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 341 (500)
...+...|++++|...++++.+.... ...+..+..+|...|++++|+..++++..... .+..++..+...|...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 89999999999999999999887543 88899999999999999999999999988643 3677899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 010807 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENS 421 (500)
Q Consensus 342 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 421 (500)
++|...++.+.+.. +.+...+..+...+...|++++|..+++.+.+... .+..++..+...|...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999865 34677899999999999999999999999988643 36788999999999999999999999998
Q ss_pred HhCCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 010807 422 HNMGV-TPD----SSTYKLLYKAYTK---ANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQS 484 (500)
Q Consensus 422 ~~~~~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 484 (500)
..... .++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+...+...|+.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 76421 112 4488999999999 999999999999998753 33566778888888887776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-18 Score=164.53 Aligned_cols=301 Identities=11% Similarity=0.001 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+. ..|++++|+..|+++.... +.+...|..+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 77 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFL----AMGKSKAALPDLTKVIALK--MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH----HccCHHHHHHHHHHHHHhC--CCcchHHHHH
Confidence 34444444444445555555444444431 122334444444444 3444444544444444321 2234444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010807 227 LRACAQARNVDQVNALFKELHESILA--PDIYTYNGV------------MDAYGKNGMIKEMESVLSRMKSNQCKPDIIT 292 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 292 (500)
...+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.+.++++.+... .+...
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 156 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAEL 156 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHH
Confidence 55555555555555555554443210 022222222 3556666666666666666665432 25556
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHH--------
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYE-------- 364 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------- 364 (500)
+..+..++...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 6666666666667777766666666543 2355666666666666677777776666666542 22222222
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 365 ----CIITMYGYCDNVSRAREIFDELSKLGKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436 (500)
Q Consensus 365 ----~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 436 (500)
.+...+...|++++|...++++.+.... +. ..+..+..++...|++++|+..+++..+.. +.+..++..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2255567777777777777777765422 22 224456667777777777777777776653 3356677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 010807 437 YKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 437 i~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
...+...|++++|...|++..+.
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777777777777754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-18 Score=162.64 Aligned_cols=313 Identities=14% Similarity=0.058 Sum_probs=257.1
Q ss_pred HHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 010807 113 FLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH 192 (500)
Q Consensus 113 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 192 (500)
..+-..+...|++++|+..|+.+.+.. +.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+.
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 82 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL- 82 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence 344556667899999999999998864 5678899999999999999999999999998863 235678888888888
Q ss_pred CcchHHHHHHHHHHHHHhhcCCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 193 TRDKAKALAKALGYFQKMKGMERCKP----NIVTYNIL------------LRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
..|++++|+..|+++... .| +...+..+ ...+...|++++|..+++++.+.... +..
T Consensus 83 ---~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 155 (359)
T 3ieg_A 83 ---KQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAE 155 (359)
T ss_dssp ---HHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ---HcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chH
Confidence 788899999999999863 34 45555555 58889999999999999999887543 788
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH-------
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN------- 329 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 329 (500)
.+..+...+...|++++|...++++.+... .+...+..+...|...|++++|...|++..+.... +...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHH
Confidence 899999999999999999999999998753 37888999999999999999999999999876433 444333
Q ss_pred -----HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 330 -----SMIINYGKARLQGKAEYVFQKMTAMKYTPSF----ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 330 -----~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
.+...+...|++++|...++.+.+... .+. ..+..+...+...|++++|...+++..+.. +.+..++..
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 311 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKD 311 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 236678899999999999999988542 233 335567889999999999999999999864 347889999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 441 (500)
+..+|...|++++|...|+++.+.. +-+...+..+..+..
T Consensus 312 ~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 312 RAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 9999999999999999999999874 234556666655543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-18 Score=172.81 Aligned_cols=337 Identities=10% Similarity=-0.001 Sum_probs=264.9
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGC----------------- 176 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------------- 176 (500)
.+...+.+.|++++|++.|+.+.+.. +.+...+..+..++...|++++|+..|+.+....-
T Consensus 64 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (537)
T 3fp2_A 64 NISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQ 141 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 34455566799999999999998874 66788999999999999999999999964321100
Q ss_pred -------------------CCCHH------------------------------HHHHHHHHHHcCc----chHHHHHHH
Q 010807 177 -------------------RPDPS------------------------------VYNALITAHLHTR----DKAKALAKA 203 (500)
Q Consensus 177 -------------------~p~~~------------------------------~~~~li~~~~~~~----~~~~~~~~a 203 (500)
.|+.. ....+...+.... ...+++++|
T Consensus 142 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 142 AMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 01111 1111111111000 023589999
Q ss_pred HHHHHHhhcCCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 010807 204 LGYFQKMKGMERCKPN-------IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMES 276 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 276 (500)
+.+|+++.... +.+ ..+|..+...+...|++++|...|+.+.+.. |+...+..+...+...|++++|.+
T Consensus 222 ~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 99999998642 233 3357777888999999999999999998864 558889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 010807 277 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY 356 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 356 (500)
.++++.+.... +..++..+..+|...|++++|++.|++..+..+. +...+..+...|...|++++|...++.+.+..
T Consensus 298 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 99999887543 6888999999999999999999999999886433 56889999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhc----------CChhhHHHHHHHH
Q 010807 357 TPSFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMN----------GLPTEADLLFENS 421 (500)
Q Consensus 357 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m 421 (500)
+.+...+..+...+...|++++|...|+++.+... ......+..+..++... |++++|...|+++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 44577899999999999999999999999876321 12233455566778888 9999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 422 HNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 422 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
.+.. +.+...+..+...|.+.|++++|.+.|++..+..
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8864 4567889999999999999999999999999764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-18 Score=168.30 Aligned_cols=356 Identities=9% Similarity=0.006 Sum_probs=276.8
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 193 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 193 (500)
.+-..+.+.|++++|++.|+.+.+.. +.+..+|..+..++.+.|++++|++.|+++.+.+ +.+...+..+..++.
T Consensus 30 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-- 104 (537)
T 3fp2_A 30 NRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE-- 104 (537)
T ss_dssp HHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH--
Confidence 34455667899999999999998874 6688999999999999999999999999998864 345777888888888
Q ss_pred cchHHHHHHHHHHHHHhhcCCC-----------------------------------CCCCHH-----------------
Q 010807 194 RDKAKALAKALGYFQKMKGMER-----------------------------------CKPNIV----------------- 221 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~-----------------------------------~~~~~~----------------- 221 (500)
..|++++|+..|+.+..... ..|+..
T Consensus 105 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 105 --SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp --HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred --HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 78889999998864421100 001111
Q ss_pred -------------HHHHHHHHHH--------HcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHhhcCCHHH
Q 010807 222 -------------TYNILLRACA--------QARNVDQVNALFKELHESILAPD-------IYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 222 -------------~~~~ll~~~~--------~~g~~~~a~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~g~~~~ 273 (500)
....+...+. ..|++++|..+|+++.+.... + ..++..+...+...|++++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 1111111111 124788999999999876433 2 2356777788899999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
|...++++.+. .|+...+..+...|...|++++|++.|+++.+... .+..+|..+...+...|++++|...++.+.+
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999886 45578899999999999999999999999988643 3788999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-----CCC
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-----VTP 428 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p 428 (500)
.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|...|+++.+.. ...
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 64 3456789999999999999999999999999875 3467889999999999999999999999987632 122
Q ss_pred CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 010807 429 DSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 483 (500)
Q Consensus 429 ~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 483 (500)
....+..+...+... |++++|...+++..+.. +.+...+..+-..+...|+.+.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 233455556777788 99999999999998763 2356778888888888876644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-18 Score=160.53 Aligned_cols=293 Identities=9% Similarity=-0.059 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHH
Q 010807 142 IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 142 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+.+...+..+...+...|++++|+++|+++.+.. +.+...+..+...+. ..|++++|+.+++++.... +.+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~--~~~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----ELNKANELFYLSHKLVDLY--PSNPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTSTH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----HhhhHHHHHHHHHHHHHhC--cCCHH
Confidence 3455567777777888888888888888887653 223444555556665 6677888888888877532 44567
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 222 TYNILLRACAQAR-NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 222 ~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
.|..+...+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...|
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 7778888888888 888888888888766433 5667777888888888888888888887766433 445566677788
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhc
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK--------YTPSFITYECIITMYGY 372 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------~~~~~~~~~~li~~~~~ 372 (500)
...|++++|++.+++..+... .+...+..+...+...|++++|...++.+.+.. .+....++..+...|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 888888888888888877643 367778888888888888888888887776531 12335677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY-TKANMK 446 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 446 (500)
.|++++|...+++..+... .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++ ...|+.
T Consensus 249 ~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred hcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 8888888888888777543 356777888888888888888888888877653 33566666666666 345544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-18 Score=160.46 Aligned_cols=291 Identities=10% Similarity=-0.049 Sum_probs=241.3
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIY 256 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 256 (500)
..+...+..+...+. ..|++++|+.+|+++.... +.+...+..++..+...|++++|..+++++.+.... +..
T Consensus 19 ~~~~~~~~~~a~~~~----~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 91 (330)
T 3hym_B 19 QENLDVVVSLAERHY----YNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPV 91 (330)
T ss_dssp -CCCTTHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STH
T ss_pred hhhHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHH
Confidence 455566677777777 6688999999999998643 455667777888999999999999999999886543 678
Q ss_pred HHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 257 ~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
.+..+...+...| ++++|.+.|++..+.... +...|..+..++...|++++|++.|++..+.... +...+..+...|
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEY 169 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 8889999999999 999999999999987543 6778999999999999999999999999886443 566777799999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHh
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG--------KDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~ 407 (500)
...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+..+|..
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 99999999999999999865 4568899999999999999999999999888732 13346789999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hcCCC
Q 010807 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVP-NKRFFLEALETF-SSSLA 480 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~ 480 (500)
.|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+. .| +...+..+..++ ...|+
T Consensus 249 ~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred hcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence 999999999999998764 446788999999999999999999999988754 45 445555555555 34443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-18 Score=163.49 Aligned_cols=279 Identities=10% Similarity=-0.003 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 010807 146 GIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNI 225 (500)
Q Consensus 146 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
..+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+. ..|++++|+..|+++.... +.+..++..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~ 137 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----ENEQELLAISALRRCLELK--PDNQTALMA 137 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----HCcCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 345555556666666666666666665542 223444555555555 4444555555555554322 334555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
+...+...|++++|...|+++.+.... +...+..+.. ... ... ....+..+...+ ..|+
T Consensus 138 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~-------~~~-----------~~~-~~~~~~~~~~~~-~~~~ 196 (368)
T 1fch_A 138 LAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE-------GAG-----------GAG-LGPSKRILGSLL-SDSL 196 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CTTHHHH-HHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH-------Hhh-----------hhc-ccHHHHHHHHHh-hccc
Confidence 555555555555555555555543321 1111100000 000 000 000000122222 5566
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 306 FDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
+++|+..|+++.+..+.. +..++..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+
T Consensus 197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 275 (368)
T 1fch_A 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYR 275 (368)
T ss_dssp HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666655532221 35556666666666666666666666655542 2345556666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT----------PDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
++.+.. +.+..++..+..+|.+.|++++|...|+++...... ....+|..+..+|...|++++|..+++
T Consensus 276 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 276 RALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 665543 224556666666666666666666666665542100 014566666666666666666665554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-18 Score=162.74 Aligned_cols=288 Identities=8% Similarity=-0.032 Sum_probs=209.9
Q ss_pred HHHHHHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 197 AKALAKALG-YFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 197 ~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
.|++++|+. .|++......-.| +...+..+...+...|++++|...|+++.+.... +..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHH
Confidence 355667776 6666554321112 2445666777777777777777777777766433 66677777777777778888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNS---------------MIINYGKA 338 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~ 338 (500)
|.+.++++.+.... +..++..+..+|...|++++|++.|+++...... +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 87777777765432 6667777777777788888888888777765432 2222211 23334488
Q ss_pred CCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 339 RLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
|++++|...++.+.+.... ++..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999886422 158899999999999999999999999998865 34688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHhcCCCCCCCccc
Q 010807 418 FENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV----------PNKRFFLEALETFSSSLAGSQSGSA 487 (500)
Q Consensus 418 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------p~~~~~~~ll~~~~~~g~~~~~~~~ 487 (500)
|+++.... +.+..++..+...|.+.|++++|...++++.+..-. .....|..+...+...|+.+.....
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998764 456889999999999999999999999999864211 1267889999999999988766544
Q ss_pred hh
Q 010807 488 KT 489 (500)
Q Consensus 488 ~~ 489 (500)
..
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-14 Score=143.82 Aligned_cols=330 Identities=12% Similarity=0.024 Sum_probs=267.2
Q ss_pred hhccCcchHHHHHHHHcc----cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 010807 104 VKVVRSEHCFLLFEELGK----SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSG 175 (500)
Q Consensus 104 ~~~~~~~~~~~l~~~l~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 175 (500)
.+.+..+....+-..+.. .+++++|++.|+...+.+ +...+..+...|.. .+++++|+..|++..+.|
T Consensus 70 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 145 (490)
T 2xm6_A 70 AEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG 145 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 334444433444344444 688999999999998865 67788888888888 889999999999998865
Q ss_pred CCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 010807 176 CRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESIL 251 (500)
Q Consensus 176 ~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 251 (500)
+...+..+-..|.......+++++|+++|++..+ ..+...+..+...|.. .++.++|.+.|+...+.|
T Consensus 146 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 217 (490)
T 2xm6_A 146 ---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE----QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG- 217 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-
Confidence 5566667776675311125579999999999886 2478888889999988 899999999999998875
Q ss_pred CCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCC
Q 010807 252 APDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKP 323 (500)
Q Consensus 252 ~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~ 323 (500)
+...+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|++.|++..+.|
T Consensus 218 --~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--- 289 (490)
T 2xm6_A 218 --DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--- 289 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---
Confidence 56778888888876 789999999999988764 45666777777776 899999999999988764
Q ss_pred CHHHHHHHHHHHHhc-----CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCH
Q 010807 324 TLPTFNSMIINYGKA-----RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLGKDMKV 395 (500)
Q Consensus 324 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~~~~~ 395 (500)
+...+..+...|... +++++|...++...+.| +...+..+...|...| +.++|.+.|++..+.+ +.
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~ 363 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EK 363 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CH
Confidence 566777888888887 89999999999998865 5567788888887766 7899999999999875 68
Q ss_pred HHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC
Q 010807 396 STLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGIV 462 (500)
Q Consensus 396 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~ 462 (500)
..+..|...|.. .+++++|...|++..+.| +...+..|...|.+ .++.++|..+|++..+.|..
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 889999999998 899999999999999875 57788889999988 89999999999999988744
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-14 Score=142.09 Aligned_cols=310 Identities=13% Similarity=0.065 Sum_probs=264.0
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGK----KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
.+++++|+..|+...+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+-..|.......
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 689999999999998875 67889999999998 999999999999998865 5566666777776311115
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cC
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NG 269 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g 269 (500)
+++++|+.+|++... .-+...+..+...|.. .+++++|++.|+...+.| +...+..+...|.. .+
T Consensus 129 ~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 201 (490)
T 2xm6_A 129 VDKAESVKWFRLAAE----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVER 201 (490)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCc
Confidence 679999999999986 3467888889999988 789999999999998875 77888888888888 89
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 010807 270 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQ 341 (500)
Q Consensus 270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 341 (500)
+.++|.+.|++..+.| +...+..+...|.. .+++++|+++|++..+.+ +...+..+...|.. .++.
T Consensus 202 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~ 275 (490)
T 2xm6_A 202 NDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP 275 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence 9999999999998875 56677788888875 789999999999998764 56677778888887 8999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---Chhh
Q 010807 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYC-----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTE 413 (500)
Q Consensus 342 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~ 413 (500)
++|...|+...+.| +...+..+...|... ++.++|...|++..+.+ +...+..+...|...| ++++
T Consensus 276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~ 349 (490)
T 2xm6_A 276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKK 349 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHH
Confidence 99999999998765 566777888888877 89999999999999876 5778888988888877 7899
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 010807 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 414 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 460 (500)
|+++|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 350 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 350 AVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999999864 67889999999998 899999999999999876
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=158.69 Aligned_cols=264 Identities=10% Similarity=0.017 Sum_probs=184.5
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 183 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVM 262 (500)
Q Consensus 183 ~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 262 (500)
+..+...+. ..|++++|+..|+++.... +.+..+|..+...|...|++++|+..|+++.+.... +..++..+.
T Consensus 68 ~~~~~~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 68 AFEEGLKRL----KEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp HHHHHHHHH----HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHH----HCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 444444444 4555666666666555422 345566666666666677777777777666654322 456666666
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCK---------PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTLPTFNSMI 332 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 332 (500)
..|...|++++|...++++.+.... .....+..+...+...|++++|+++|+++.+..+. .+..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 6777777777777777666553211 01233445678888999999999999998876433 2688899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
..|...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+... .+..++..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999988864 45688999999999999999999999999988643 35889999999999999999
Q ss_pred hHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010807 413 EADLLFENSHNMGV---T--------PDSSTYKLLYKAYTKANMKELVQKLLKR 455 (500)
Q Consensus 413 ~A~~~~~~m~~~~~---~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 455 (500)
+|...|+++.+... . .+...|..+..++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999998876320 1 1357889999999999999888877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=156.64 Aligned_cols=268 Identities=8% Similarity=-0.018 Sum_probs=215.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 010807 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTY 223 (500)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (500)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...|..+...+. ..|++++|+..|+++.... +.+..+|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~--p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----ENENEQAAIVALQRCLELQ--PNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcC--CCCHHHH
Confidence 44568888999999999999999999998764 346778888888888 6777999999999988643 5568899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHH
Q 010807 224 NILLRACAQARNVDQVNALFKELHESILA---------PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITF 293 (500)
Q Consensus 224 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 293 (500)
..+...|...|++++|...|+++.+.... .....+..+...+.+.|++++|.+.++++.+.... .+..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999999998775311 01233445678899999999999999999887433 268889
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+...|...|++++|++.|++..+..+ .+..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 9999999999999999999999988643 378899999999999999999999999998864 44588999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKD-----------MKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|++++|...|+++.+.... .+..+|..+..++...|+.+.+..+..+
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998873311 1367899999999999999998887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.9e-17 Score=150.20 Aligned_cols=276 Identities=11% Similarity=0.048 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNIL 226 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 226 (500)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+. ..|++++|+..|+++.... +.+..++..+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 95 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----ENEKDGLAIIALNHARMLD--PKDIAVHAAL 95 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhcC--cCCHHHHHHH
Confidence 34555666666666666666666665542 224445555555555 4445666666666655421 3345566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHhccC
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL-ID-SYGKRQ 304 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~-~~~~~~ 304 (500)
...+...|++++|.+.++++.+.... +...+..+... .|+......+ .. .+...|
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcc
Confidence 66666666666666666666554322 11111111000 0000011111 11 244555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFD 384 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 384 (500)
++++|.+.++++.+... .+..++..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...++
T Consensus 153 ~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666665555554422 245555555556666666666666666555532 2345555666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 385 ELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTP-----------DSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 385 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
++.+.. +.+..++..+..+|...|++++|...++++....... +...+..+..++.+.|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 655543 2245566666666666666666666666655432110 2455666666666666666666665
Q ss_pred HH
Q 010807 454 KR 455 (500)
Q Consensus 454 ~~ 455 (500)
++
T Consensus 310 ~~ 311 (327)
T 3cv0_A 310 AQ 311 (327)
T ss_dssp TC
T ss_pred HH
Confidence 43
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=149.02 Aligned_cols=259 Identities=9% Similarity=-0.023 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
..+..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|.+.++++.+... .+...+..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 34556666777777777777777777665433 666777777777777777777777777766532 2566777777777
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM--------------II-NYGKARLQGKAEYVFQKMTAMKYTPSFITYEC 365 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 365 (500)
...|++++|++.++++.+.... +...+..+ .. .+...|++++|...++.+.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 7778888888887777765322 22222222 22 3778899999999999998865 447889999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+...|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998875 3468899999999999999999999999988764 4468899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHhcCCCCCCCc
Q 010807 446 KELVQKLLKRMEQNGIVP-----------NKRFFLEALETFSSSLAGSQSG 485 (500)
Q Consensus 446 ~~~a~~~~~~m~~~g~~p-----------~~~~~~~ll~~~~~~g~~~~~~ 485 (500)
+++|.+.++++.+..-.. +...+..+...+...|+.+...
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999998753221 4677888888888888775443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=176.42 Aligned_cols=117 Identities=15% Similarity=0.252 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHE---SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+||++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 245555555555555555555555555555555555555555555555
Q ss_pred HHHHhccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 297 IDSYGKRQA-FDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 297 i~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
|+++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 555555554 2445555555555555555555555554333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-16 Score=143.69 Aligned_cols=249 Identities=12% Similarity=0.059 Sum_probs=133.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 010807 155 MGKKGQTRLAMWLFSEMRNSGCRPDP--SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ 232 (500)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 232 (500)
....|++..|+..++..... .|+. .....+..+|. ..|+++.|+..++.. -+|+..++..+...+..
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi----~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYL----AQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHH----HTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHH----HCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcC
Confidence 33445555555555443221 2222 22233444454 444455555544321 14455555566666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (500)
.++.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666665554333 334444444566666666666666655 2355556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 312 VFKSLMHSKEKPTLPTF---NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666665542 221111 112222333466666666666666542 44566666666666666666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHhC
Q 010807 389 LGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNM 424 (500)
Q Consensus 389 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 424 (500)
..+ -+..++..++..+...|+.++ +.++++++.+.
T Consensus 229 ~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 229 KDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 432 255666666666666666654 45566665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=173.59 Aligned_cols=153 Identities=7% Similarity=-0.017 Sum_probs=127.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTA---MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
-..||+++|++|++.|+.++|..+|..|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 010807 401 MLEAYCMNGLP-TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN------KRFFLEALE 473 (500)
Q Consensus 401 li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~ 473 (500)
||.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ .-++.|+ ..+..-+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998776554 344445555 3466665 334445555
Q ss_pred HHhcCCCC
Q 010807 474 TFSSSLAG 481 (500)
Q Consensus 474 ~~~~~g~~ 481 (500)
-+.+.+..
T Consensus 281 l~s~d~~~ 288 (1134)
T 3spa_A 281 VYAKDGRV 288 (1134)
T ss_dssp HHCCCSCC
T ss_pred HHccCCCC
Confidence 56665543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=157.39 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=137.4
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKAL 200 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 200 (500)
+.|++++|.++++.+.. ..+|..++.++.+.|++++|++.|.+. +|...|..++.++. ..|++
T Consensus 15 ~~~~ld~A~~fae~~~~-------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae----~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE-------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN----TSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH----hCCCH
Confidence 44779999999998832 348999999999999999999999653 67779999999888 78899
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 280 (500)
++|+.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..
T Consensus 78 EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 78 EELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988777652 5667889999999999999999998884 36778999999999999999999999997
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 010807 281 MKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSF 360 (500)
Q Consensus 281 m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 360 (500)
+ ..|..++.++.+.|++++|++.+.++ .++.+|..++.+|...|+++.|...... +...+
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~a 207 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 207 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCH
Confidence 7 36899999999999999999999988 2889999999999999999999655443 23344
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhhHHHHHHHHHhCCCCC------CHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN--GLPTEADLLFENSHNMGVTP------DSST 432 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~ 432 (500)
.-...++..|.+.|.+++|..+++...... +-....|+-|..+|++- ++..+.++.|..- .+++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHH
Confidence 445679999999999999999999998765 55688999998888875 3455555555421 12222 4566
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q 010807 433 YKLLYKAYTKANMKELVQKL 452 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~ 452 (500)
|..+.-.|.+.++++.|...
T Consensus 285 w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHH
Confidence 88888889999999988864
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-14 Score=142.68 Aligned_cols=211 Identities=9% Similarity=0.030 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010807 273 EMESVLSRMKSNQCKPDIITFNLLIDSYGK-------RQAFD-------KMEQVFKSLMHSKEKPTLPTFNSMIINYGKA 338 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 338 (500)
.+..+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5666777776652 2366777777777764 68876 8999999988632334688888999999999
Q ss_pred CCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhhHH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEAD 415 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~ 415 (500)
|++++|..+|+.+.+. .|+ ...|..++..+.+.|++++|.++|++..+... .+...|...... +...|++++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999885 343 35788888888889999999999999887532 233333332222 34689999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhcCCCCCCCccch
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG-IVPN--KRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
.+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+.-....|+.+....+.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999887753 3357888888888889999999999999998874 3343 345656666555566554444333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-15 Score=137.50 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNI--VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
..|.+..|+..+++.... .|+. .....+.++|...|+++.|+..++. .-.|+..++..+...+...|+.++
T Consensus 11 ~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 567799999999887642 3443 3556678999999999999987754 235577888999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 274 a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|...++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998876544 566677788999999999999999987 4578899999999999999999999999999
Q ss_pred hCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 010807 353 AMKYTPSFIT---YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD 429 (500)
Q Consensus 353 ~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 429 (500)
+.. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.... +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 864 54321 1233455556699999999999999874 5689999999999999999999999999988864 447
Q ss_pred HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHH
Q 010807 430 SSTYKLLYKAYTKANMKEL-VQKLLKRMEQNGIVPNKR 466 (500)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~ 466 (500)
..++..++..+...|+.++ +.++++++.+. .|+..
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 8899999999999999876 67898888864 34443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-13 Score=133.90 Aligned_cols=383 Identities=11% Similarity=0.092 Sum_probs=263.8
Q ss_pred CccchhHHHHHHHHHHhcCCCchH-HHHHHHhhhccCcchHHHHHHHHccc------------------CCHHHHH----
Q 010807 73 KSEELESKELVRVLMRSFSDKEPL-VRTLNKYVKVVRSEHCFLLFEELGKS------------------DKWLQCL---- 129 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~~l~~~------------------~~~~~A~---- 129 (500)
.+...++..+++.++...|....+ ...+....+.++.+.+..+++.+.+. |+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 456778888888888877766553 33444555556666666666554332 2333333
Q ss_pred HHHHHHHHccCC-CCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------
Q 010807 130 EVFRWMQKQRWY-IADTGIYSKLIAVMGK---------KGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLH------- 192 (500)
Q Consensus 130 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~------- 192 (500)
.+|+.....-+. +++...|...+....+ .|+++.|..+|++..+....+....|.......-.
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHH
Confidence 366665543222 3456778888777665 68899999999998873111112334332221000
Q ss_pred --CcchHHHHHHHHHHHHHh------hcC--CCCCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHH
Q 010807 193 --TRDKAKALAKALGYFQKM------KGM--ERCKPN--------IVTYNILLRACAQA----RNV----DQVNALFKEL 246 (500)
Q Consensus 193 --~~~~~~~~~~a~~~~~~~------~~~--~~~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~m 246 (500)
.....+.+.+|..++... ... ..++|+ ...|...+...... ++. +++..+|++.
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 001456778888777652 210 012444 34666666544332 232 4778889988
Q ss_pred HhCCCCCCHHHHHHHHHHHhh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 247 HESILAPDIYTYNGVMDAYGK-------NGMIK-------EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 247 ~~~g~~p~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
..... -+...|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+
T Consensus 265 l~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 87633 367888888888775 79987 8999999998632334688899999999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCC
Q 010807 313 FKSLMHSKEKPT-LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 313 ~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~ 390 (500)
|+++++..+. + ...|..++..+.+.|+.++|..+|+...+.. +.+...|...... +...|+.++|..+|+...+..
T Consensus 344 ~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 344 YNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp HHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 9999985322 3 3589999999999999999999999999863 2233333332222 346899999999999988864
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTPD--SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 422 -p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 422 -GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999998864 2332 457888888888999999999999998864
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.3e-15 Score=131.36 Aligned_cols=241 Identities=13% Similarity=-0.029 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CC----HHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PD----IITF 293 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~ 293 (500)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|.+.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888889999999999999999988877 67888999999999999999999999988764221 12 5788
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC 373 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 373 (500)
..+..+|...|++++|++.|++.... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999998874 3443 34666788999999999988853 33467788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
|++++|...++++.+... .+..+|..+..+|...|++++|+..+++..+.. +.+...+..+...+.+.|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999988653 468899999999999999999999999998864 446888999999999999999999999
Q ss_pred HHHHHC----CCCCCHHHHHHHHHH
Q 010807 454 KRMEQN----GIVPNKRFFLEALET 474 (500)
Q Consensus 454 ~~m~~~----g~~p~~~~~~~ll~~ 474 (500)
++..+. +..|+.......+..
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHhChhhcCCCchHHHHHHHHH
Confidence 988764 233665555544443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=149.66 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=113.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 010807 157 KKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV 236 (500)
Q Consensus 157 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 236 (500)
+.|++++|.++++++. +..+|..+..++. +.|++++|++.|.+. +|..+|..++..+...|++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l----~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQL----QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHH----HcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCH
Confidence 6788999999999983 2359999999999 889999999999653 4677999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
++|+..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988776664 4467888999999999999999998885 367789999999999999999999999976
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 317 MHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVS 396 (500)
Q Consensus 317 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 396 (500)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..++.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHh
Confidence 37999999999999999999999988 3789999999999999999999665544 223455
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 397 TLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 397 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
-...++..|.+.|++++|+.+++...... .-....|+-|..+|++-. .++..+.+
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~-p~k~~ehl 263 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHL 263 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 56679999999999999999999988765 556778888877777642 33333333
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-14 Score=140.44 Aligned_cols=343 Identities=12% Similarity=-0.007 Sum_probs=227.5
Q ss_pred HHHcccCCHHHHHHHHHHHHHc-------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHH
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQ-------RWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G-CRP-DPSV 182 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~ 182 (500)
......|++++|++.|++..+. ...+....+|+.+..+|...|++++|...|++..+. + ..+ ...+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 3344569999999998876542 112334678999999999999999999999987652 1 111 2455
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010807 183 YNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA---CAQARNVDQVNALFKELHESILAPDIYTYN 259 (500)
Q Consensus 183 ~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 259 (500)
+..+..++... ..+++++|+..|++..... +-+...+..+..+ +...++.++|++.+++..+.... +...+.
T Consensus 139 ~~~~g~~~~~~--~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~ 213 (472)
T 4g1t_A 139 DCEEGWTRLKC--GGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKV 213 (472)
T ss_dssp HHHHHHHHHHH--CTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHH
T ss_pred HHHHHHHHHHH--ccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHH
Confidence 55554445422 2357999999999998643 3455566555555 34567788899999988776443 566666
Q ss_pred HHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 260 GVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 260 ~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
.+...+.. .|++++|.+.+++....... +...+..+...|...|++++|+..+++..+..+. +..++..+..+|
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y 291 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 66555544 46778999999998876433 7778899999999999999999999999886433 677777777666
Q ss_pred Hhc-------------------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH-
Q 010807 336 GKA-------------------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV- 395 (500)
Q Consensus 336 ~~~-------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 395 (500)
... +..+.|...++...+.. +.+..++..+...|...|++++|...|++..+....+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 432 23566777787777654 344567788999999999999999999999886543322
Q ss_pred -HHHHHHHH-HHHhcCChhhHHHHHHHHHhCCC-----------------------CCCHHHHHHHHHHHHHcCCHHHHH
Q 010807 396 -STLNAMLE-AYCMNGLPTEADLLFENSHNMGV-----------------------TPDSSTYKLLYKAYTKANMKELVQ 450 (500)
Q Consensus 396 -~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~-----------------------~p~~~~~~~li~~~~~~g~~~~a~ 450 (500)
..+..+.. .+...|++++|+..|.+...... +.+..+|..+...|...|++++|.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 371 QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 12333332 23467899999999988765421 234567888888999999999999
Q ss_pred HHHHHHHHCC-CCCCHHH
Q 010807 451 KLLKRMEQNG-IVPNKRF 467 (500)
Q Consensus 451 ~~~~~m~~~g-~~p~~~~ 467 (500)
+.|++..+.| ..|+...
T Consensus 451 ~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASS 468 (472)
T ss_dssp ------------------
T ss_pred HHHHHHHhcCCCCCcHhh
Confidence 9999988764 3455443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-12 Score=135.78 Aligned_cols=319 Identities=12% Similarity=0.098 Sum_probs=234.0
Q ss_pred hhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccC-CCCCHHHHHHH---------------------------HHHH
Q 010807 104 VKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRW-YIADTGIYSKL---------------------------IAVM 155 (500)
Q Consensus 104 ~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l---------------------------i~~~ 155 (500)
.+..+++..-...+.+...|.+.+|+++++++.-.+. +..+....+.+ ...+
T Consensus 980 ~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 980 SETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred ccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 4556777777788888888999999999998874431 12233334433 3456
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCC
Q 010807 156 GKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARN 235 (500)
Q Consensus 156 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 235 (500)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie-------~i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE-------HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH-------HHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Confidence 67777888888887752 12222233333 5567888888888663 46788899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKS 315 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 315 (500)
+++|+..|... -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|.+.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 377888889999999999999999998877764 33333445888899998888644443
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 010807 316 LMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV 395 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 395 (500)
-.++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +.
T Consensus 1191 -----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 -----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred -----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 1346667778899999999999999999874 378899999999999999999988762 57
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 396 STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
.+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... +-....|..+-..+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence 8888888888888888888877664 23466777888999999999999999997766333 22334454444444
Q ss_pred hc
Q 010807 476 SS 477 (500)
Q Consensus 476 ~~ 477 (500)
++
T Consensus 1325 aK 1326 (1630)
T 1xi4_A 1325 SK 1326 (1630)
T ss_pred Hh
Confidence 43
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=126.20 Aligned_cols=197 Identities=12% Similarity=0.020 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
++...+..+...+.+.|++++|+..|++..+..+. +...+..+...+.+.|++++|+..+++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 34455555555666666666666666665554333 4555555555555666666666666555554322 444555555
Q ss_pred HHHhcc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 298 DSYGKR-----------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECI 366 (500)
Q Consensus 298 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 366 (500)
.++... |++++|+..|++..+..+. +...+..+..++...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 555555 4444444444444443221 33444444444444444444444444444433 334444444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
..+|...|++++|...|++..+..+ .+...+..+..++...|++++|+..|++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444444444444444321 1344444444444444444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-14 Score=125.88 Aligned_cols=200 Identities=12% Similarity=-0.030 Sum_probs=162.9
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 252 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 252 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
+++...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|+..|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 356678888899999999999999999999987544 7888999999999999999999999999886433 78889999
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 332 IINYGKA-----------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNA 400 (500)
Q Consensus 332 i~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 400 (500)
..++... |++++|...+++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998864 3457889999999999999999999999999877 68999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 401 MLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
+..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999998864 4467888999999999999999999987654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-13 Score=120.51 Aligned_cols=225 Identities=13% Similarity=0.024 Sum_probs=176.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITF 293 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~ 293 (500)
-+...+..+...+...|++++|++.|++..+. -+...+..+...|.. .+++++|++.|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35667777788888888888888888887773 255677777778888 888888888888887765 66777
Q ss_pred HHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 294 NLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITYEC 365 (500)
Q Consensus 294 ~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 365 (500)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777788877 888888888888887764 67778888888888 888888888888888765 5666777
Q ss_pred HHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 366 IITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLY 437 (500)
Q Consensus 366 li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 437 (500)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 7777777 788888888888888765 46777788888888 888888888888887764 366777777
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCC
Q 010807 438 KAYTK----ANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 438 ~~~~~----~g~~~~a~~~~~~m~~~g 460 (500)
..|.+ .+++++|.+++++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 88887 888888888888887765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-14 Score=128.56 Aligned_cols=226 Identities=9% Similarity=-0.021 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCC-CCCCC----
Q 010807 145 TGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGME-RCKPN---- 219 (500)
Q Consensus 145 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---- 219 (500)
...|..+...+...|++++|+..|++..+.. .+...+..+..++. ..|++++|+..|++..... ...++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----EKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----HcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 4557777777777888888888888777765 56666666666666 5556777777777665421 00111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
..+|..+...+...|++++|...|+++.+.. |+. ..+.+.|++++|...++++...... +...+..+...
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 148 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHH
Confidence 4566677777777777777777777766542 232 2344445556666666665554211 33445555555
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
+...|++++|+..|++..+... .+..+|..+..+|...|++++|...++...+.. +.+...+..+...+...|++++|
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHH
Confidence 5555555555555555554322 234445555555555555555555555544432 22344444444444455555555
Q ss_pred HHHHHHHHH
Q 010807 380 REIFDELSK 388 (500)
Q Consensus 380 ~~~~~~~~~ 388 (500)
...+++..+
T Consensus 227 ~~~~~~a~~ 235 (258)
T 3uq3_A 227 LETLDAART 235 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-12 Score=133.34 Aligned_cols=312 Identities=13% Similarity=0.132 Sum_probs=238.5
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
+..+-..+...|.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+-.++.
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHH
Confidence 33445566778999999999999632 1222333332 778999999999865 34678888888888
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 271 (500)
..|++++|++.|.+. .|...|..++..|.+.|++++|++.|...++..-.|.. .+.++.+|++.+++
T Consensus 1117 ----~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1117 ----QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRL 1183 (1630)
T ss_pred ----hCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHHhhcCH
Confidence 788899999999775 37788899999999999999999999988776533333 33599999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
++...++ . .++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 8654443 2 346677778999999999999999999985 48999999999999999999999876
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH
Q 010807 352 TAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSS 431 (500)
Q Consensus 352 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 431 (500)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... .-...
T Consensus 1248 ------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~g 1315 (1630)
T 1xi4_A 1248 ------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 1315 (1630)
T ss_pred ------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhH
Confidence 35689999999999999999998876543 2357788899999999999999999998887654 33455
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHhcCCCCC
Q 010807 432 TYKLLYKAYTKA--NMKELVQKLLKRMEQN-GIVP------NKRFFLEALETFSSSLAGS 482 (500)
Q Consensus 432 ~~~~li~~~~~~--g~~~~a~~~~~~m~~~-g~~p------~~~~~~~ll~~~~~~g~~~ 482 (500)
.|+-|...+++. ++..++.++|. ++ +++| +...|..++--|.+.|.++
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 677777777664 34444444443 33 3333 3456777777777666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=130.52 Aligned_cols=248 Identities=8% Similarity=-0.112 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 196 KAKALAKALGYFQKMKGMERC--KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
..|++++|+..|+++...... +.+..+|..+...+...|++++|...|+++.+.... +..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 568899999999999863211 124678889999999999999999999999887544 78899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
|.+.++++.+.... +...+..+..+|.+.|++++|.+.|+++.+.. |+.......+..+...|++++|...++....
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999886433 67788999999999999999999999998753 3333444445555677999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 010807 354 MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDS 430 (500)
Q Consensus 354 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 430 (500)
.. +++...+ .++..+...++.++|...+....+..... +..++..+..+|...|++++|...|+++.... |+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence 53 3343444 47777888888999999998887643211 25788899999999999999999999998763 422
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 010807 431 STYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233355677888888887765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-13 Score=117.47 Aligned_cols=202 Identities=10% Similarity=-0.055 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...|..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 3455666666667777777777777666654322 4556666666666666666666666666554322 4555556666
Q ss_pred HHhcc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 299 SYGKR-QAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV 376 (500)
Q Consensus 299 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 376 (500)
.|... |++++|+..++++.+.+..| +...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 66666666666665521122 23455555555555566666655555555432 22344555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
++|..+++.+.+.....+...+..+...+...|+.++|..+++.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555433212444455555555555555555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-12 Score=117.40 Aligned_cols=211 Identities=14% Similarity=0.033 Sum_probs=150.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK---- 267 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---- 267 (500)
..|++++|+..|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 18 ~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred hCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCc
Confidence 33445566666655554 2344556666666666 777777777777776654 56666677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----AR 339 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 339 (500)
.+++++|++.|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 164 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPK 164 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCC
Confidence 777777777777777664 56667777777777 778888888887777654 55666677777776 77
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLP 411 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 411 (500)
++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++
T Consensus 165 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 165 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 8888888888877754 45667777777777 888888888888888765 36677778888887 8888
Q ss_pred hhHHHHHHHHHhCC
Q 010807 412 TEADLLFENSHNMG 425 (500)
Q Consensus 412 ~~A~~~~~~m~~~~ 425 (500)
++|...|++..+.|
T Consensus 239 ~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 239 KQAIENFKKGCKLG 252 (273)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888877764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-13 Score=120.06 Aligned_cols=201 Identities=10% Similarity=-0.003 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 456677777777777777777777777665322 5566666667777777777777777766655322 45566666666
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 378 (500)
|...|++++|+++|+++...+..| +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666665522222 34455555556666666666666666555532 2234555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...++.+.+... .+...+..+...+...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555555554332 34445555555555555555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.1e-13 Score=119.15 Aligned_cols=210 Identities=10% Similarity=0.023 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 255 IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN 334 (500)
Q Consensus 255 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 334 (500)
...+..+...+...|++++|.+.|+++.+... .+...+..+..+|...|++++|.+.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 45677788889999999999999999987643 3788899999999999999999999999987643 378899999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 335 YGKARLQGKAEYVFQKMTAMKYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
|...|++++|..+++.+.+.+..| +...+..+...+...|++++|...++++.+... .+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998843344 467888899999999999999999999988653 368899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 010807 414 ADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLE 470 (500)
Q Consensus 414 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 470 (500)
|...++++.+.. +.+...+..+...+...|++++|.++++++.+.. |+...+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~ 247 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQE 247 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 999999998764 4577888899999999999999999999998753 54444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-13 Score=121.89 Aligned_cols=245 Identities=12% Similarity=0.015 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKP--DIITFNLLIDS 299 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~ 299 (500)
.+......+...|++++|+..|+++.+.... +...+..+...+...|++++|++.+++..+....+ ....|..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455677788888999999999888876543 45577778888888999999999998888743222 23447888888
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
|...|++++|++.|++..+.... +..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888876433 66788888899999999999999998887763 44567777777334445699999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHHcCCHHHH
Q 010807 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG-VTPD------SSTYKLLYKAYTKANMKELV 449 (500)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~a 449 (500)
.+.|+++.+... .+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|.+.|++++|
T Consensus 162 ~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998888653 357788888888888888 888888888876531 1233 25777788888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q 010807 450 QKLLKRMEQNGIVPNKRFFLEAL 472 (500)
Q Consensus 450 ~~~~~~m~~~g~~p~~~~~~~ll 472 (500)
.+.+++..+.. |+.......+
T Consensus 241 ~~~~~~al~~~--p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD--PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHhcC--ccHHHHHHHh
Confidence 99999988653 5544443333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-13 Score=126.02 Aligned_cols=230 Identities=9% Similarity=-0.022 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
...|+.+...+.+.|++++|+..|+++++.... +...|+.+..++...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 345666666677777777777777777765443 56667777777777775 77777777777766443 6667777777
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY-CDNVS 377 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~ 377 (500)
++...|++++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777777777777777777765433 66777777777777777777777777777754 3356777777777777 45445
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------
Q 010807 378 RA-----REIFDELSKLGKDMKVSTLNAMLEAYCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKAN------ 444 (500)
Q Consensus 378 ~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g------ 444 (500)
+| +..|++.++... -+...|+.+..++...| ++++|++.+.++ +.. ..+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 55 477777776543 25677777777777777 577888877776 332 345667777777777763
Q ss_pred ---CHHHHHHHHHHH
Q 010807 445 ---MKELVQKLLKRM 456 (500)
Q Consensus 445 ---~~~~a~~~~~~m 456 (500)
.+++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 247788888877
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=122.27 Aligned_cols=201 Identities=7% Similarity=0.021 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
....|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 4455666666777777777777777777664332 5666666677777777777777777776655322 5566666667
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 378 (500)
.|...|++++|++.++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777665432 255666666667777777777777777666543 3345666666666777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...++++.+... .+..++..+..+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777776666532 34666666777777777777777777766654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-12 Score=125.73 Aligned_cols=308 Identities=10% Similarity=-0.016 Sum_probs=220.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC-
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-----G--CRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM- 213 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~- 213 (500)
..+..||.+..++...|+.++|++.|++..+. + ..| ...+|+.+...|. ..|++++|+..|++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----HMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----HcCChHHHHHHHHHHHHHh
Confidence 34678999999999999999999999987542 1 122 4567888888888 677799998888876531
Q ss_pred ---CC--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HhhcCCHHHHHHHHHHHHh
Q 010807 214 ---ER--CKPNIVTYNILLRACAQA--RNVDQVNALFKELHESILAPDIYTYNGVMDA---YGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 214 ---~~--~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~ 283 (500)
.+ ......+++.+..++... +++++|+..|++..+..+. +...+..+..+ +...++.++|++.+++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 11 122456777776666654 4699999999999876543 45555555444 4456788889999998877
Q ss_pred CCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 010807 284 NQCKPDIITFNLLIDSYG----KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS 359 (500)
Q Consensus 284 ~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 359 (500)
.... +...+..+...+. ..+++++|.+++++.....+ .+..++..+...|...|++++|...+++..+.. +-+
T Consensus 204 l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 280 (472)
T 4g1t_A 204 LNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNN 280 (472)
T ss_dssp HCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred cCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCh
Confidence 6433 5566665554443 35788899999999887643 478889999999999999999999999998864 345
Q ss_pred HHHHHHHHHHHhcc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 360 FITYECIITMYGYC-------------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 360 ~~~~~~li~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
..++..+...|... +..+.|...++...+... .+..++..+...|...|++++|+..|++
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~k 359 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQK 359 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHH
Confidence 66777776665432 235678888888877643 3566788899999999999999999999
Q ss_pred HHhCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHC
Q 010807 421 SHNMGVTPDSS--TYKLLYK-AYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 421 m~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~ 459 (500)
..+....+... .+..+.. ...+.|++++|+..|++..+.
T Consensus 360 aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 360 EFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 98865333221 2233332 345789999999999988764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-12 Score=114.36 Aligned_cols=214 Identities=10% Similarity=0.044 Sum_probs=180.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 333 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 333 (500)
+...+..+...+...|++++|.+.++++.+... .+...+..+..+|...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 456788888999999999999999999988643 3678899999999999999999999999987643 37888999999
Q ss_pred HHHhc-CCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 010807 334 NYGKA-RLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 334 ~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 411 (500)
.+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++.+... .+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999998433343 67888999999999999999999999988653 3688999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 412 TEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEAL 472 (500)
Q Consensus 412 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 472 (500)
++|...++++.......+...+..+...+...|+.+.+..+++.+.+. .|+...+..++
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 999999999887642157778888888899999999999999998754 35555544443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=121.76 Aligned_cols=222 Identities=13% Similarity=0.098 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP--DIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++..+.+..+ ....|..+...+...|++++|+
T Consensus 17 ~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 33444444444443321 2222344444445555555555555555554422111 1223455555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+.+++..+.... +...+..+..+|...|++++|++.|++..+.. +.+...|..+...+...+++++|...++.+.+..
T Consensus 95 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 95 QQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp HHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 555555443222 34455555555555666666666665555442 2244445555422223336666666666555532
Q ss_pred CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 356 YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLG-KDMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+.+...+..+..++...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|...|+++.+.
T Consensus 173 -p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 173 -PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2234455555555555555 555555555554421 0111 245556666666667777777777666654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-13 Score=126.48 Aligned_cols=149 Identities=8% Similarity=0.043 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHHH-HHHHHHHHHHhhcCCCCCCCHH
Q 010807 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKA-LAKALGYFQKMKGMERCKPNIV 221 (500)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 221 (500)
+...|+.+..++.+.|++++|+..|++.++. .| +...|+.+...+. ..|+ +++|+..|+++.... +.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~----~~g~d~~eAl~~~~~al~l~--P~~~~ 167 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----SLQKDLHEEMNYITAIIEEQ--PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----HTTCCHHHHHHHHHHHHHHC--TTCHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHH----HcccCHHHHHHHHHHHHHHC--CCCHH
Confidence 3567888888888888888888888888764 34 3455555555555 4453 666666666665432 34555
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
.|+.+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++.+.... +...|+.+..++.
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6666666666666666666666666554433 4555555555555555555555555555554332 4445555555554
Q ss_pred c
Q 010807 302 K 302 (500)
Q Consensus 302 ~ 302 (500)
+
T Consensus 246 ~ 246 (382)
T 2h6f_A 246 N 246 (382)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-13 Score=119.82 Aligned_cols=202 Identities=9% Similarity=0.043 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
.....|..+...+...|++++|...|+++.+.... +...+..+..+|...|++++|++.|+++.+... .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 34566777888899999999999999999886433 788899999999999999999999999987643 3788999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
..|...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998864 45688899999999999999999999999988653 46889999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+|+..++++.... +.+..++..+...+...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999988764 446889999999999999999999999999875
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=123.69 Aligned_cols=224 Identities=12% Similarity=-0.060 Sum_probs=147.6
Q ss_pred cccCCHHHHHHHHHHHHHccCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH
Q 010807 120 GKSDKWLQCLEVFRWMQKQRWY--IADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA 197 (500)
Q Consensus 120 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 197 (500)
...+++++|+..|+.+.+.... +.+..+|..+...+...|++++|...|+++.+.. +.+...|..+...+. ..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----~~ 90 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT----QA 90 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----HT
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH----Hc
Confidence 3457888999999888875311 1246678888888999999999999999888753 235677777777777 66
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESV 277 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 277 (500)
|++++|+..|+++.... +.+...|..+...+...|++++|...|+++.+.. |+.......+..+...|++++|...
T Consensus 91 ~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHH
Confidence 67888888888877532 4456777888888888888888888888877643 3333344444455666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP---TLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
+.+...... ++...+ .++..+...++.++|++.+++........ +..++..+...|...|++++|...|+.+.+.
T Consensus 167 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 167 LKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 766655422 232333 35556666677777777777665432110 1345555555666666666666666665553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-12 Score=124.13 Aligned_cols=296 Identities=10% Similarity=0.012 Sum_probs=205.6
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHHcCcchHHHHHHHH-----------HHHHHhhcCCCCCCC
Q 010807 155 MGKKGQTRLAMWLFSEMRNS--GCRPDP--SVYNALITAHLHTRDKAKALAKAL-----------GYFQKMKGMERCKPN 219 (500)
Q Consensus 155 ~~~~g~~~~A~~~~~~m~~~--g~~p~~--~~~~~li~~~~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~~ 219 (500)
+.+.+++++|..+++++.+. .+..|. ..|-.++..-... -.+.++.+. +.++.+... +.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~--~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~ 96 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNL--MLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QAR 96 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH--HHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH--HHhhcCcccccccccccchhhHHHHHHhc---CCC
Confidence 44577888888888877653 222332 2333333221100 223344444 555555431 111
Q ss_pred HH------HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----
Q 010807 220 IV------TYNILLRACAQARNVDQVNALFKELHES----ILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN---- 284 (500)
Q Consensus 220 ~~------~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 284 (500)
.. .+......+...|++++|...|++..+. +-.+ ...++..+...|...|++++|...+.+..+.
T Consensus 97 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 176 (383)
T 3ulq_A 97 LTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 11 1223666788899999999999998764 1111 2467888899999999999999999987653
Q ss_pred CC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---
Q 010807 285 QC--KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-P----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM--- 354 (500)
Q Consensus 285 ~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 354 (500)
+. .....+++.+..+|...|++++|++.|++..+.... . ...++..+...|...|++++|...+++..+.
T Consensus 177 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 177 EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 11 112457888899999999999999999987653111 1 1247888999999999999999999988762
Q ss_pred -CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCC
Q 010807 355 -KY-TPSFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMG 425 (500)
Q Consensus 355 -~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~ 425 (500)
+. +....++..+...|...|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~ 333 (383)
T 3ulq_A 257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---M 333 (383)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---T
T ss_pred hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---c
Confidence 32 334678899999999999999999999987753 111123345678888888998 78888888775 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 426 VTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 426 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..|+ ...+..+...|...|++++|..++++..+
T Consensus 334 ~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333 45677888899999999999999998875
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=127.94 Aligned_cols=224 Identities=9% Similarity=-0.010 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG---MIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
.+..+...|...+.++++......+.+.-...+...+..+...|.+.| +.++|++.|++..+.|.. +...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 444445555555533333332222211111123336777777777788 788888888888877644 5555566666
Q ss_pred HHhcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 299 SYGKR----QAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-Y--GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 299 ~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
.|... +++++|++.|++.. . -+...+..+... | ...+++++|...|++..+.| +...+..|...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 66554 68888888888876 2 245566666665 3 45788888888888888765 5667777777776
Q ss_pred ccC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 372 YCD-----NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 372 ~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
.| ++++|.+.|++.. .| ++..+..|...|.. ..++++|..+|++..+.|. ......|...|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQ 366 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHS
T ss_pred -cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHh
Confidence 44 8888888888777 43 57777777777766 3378888888888877662 3345556666653
Q ss_pred ----cCCHHHHHHHHHHHHHCCC
Q 010807 443 ----ANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 443 ----~g~~~~a~~~~~~m~~~g~ 461 (500)
..+.++|..+|+...+.|.
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC
Confidence 4578888888888887774
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-13 Score=128.71 Aligned_cols=269 Identities=10% Similarity=-0.012 Sum_probs=136.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC----CCCCCC
Q 010807 149 SKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-P----SVYNALITAHLHTRDKAKALAKALGYFQKMKGM----ERCKPN 219 (500)
Q Consensus 149 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 219 (500)
..+...+...|++++|+..|++..+.+ |+ . ..+..+...+. ..|++++|+..|++.... ...+..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYF----YLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 334444555555555555555555432 22 1 23334444444 444455555555444321 001223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCC-----------------HHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESI-----LAPDIYTYNGVMDAYGKNGM-----------------IKEMESV 277 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~-----------------~~~a~~~ 277 (500)
..++..+...|...|++++|...+++..+.. ......++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 4566777777777888888887777665421 01123455666666666777 6666666
Q ss_pred HHHHHhC----CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHH
Q 010807 278 LSRMKSN----QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYV 347 (500)
Q Consensus 278 ~~~m~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~ 347 (500)
+++..+. +. .....++..+...|...|++++|++.+++..+.... .+ ..++..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6654331 11 112235556666666667777777666665432110 01 12455555666666666666666
Q ss_pred HHHHHhCCCC-C----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 348 FQKMTAMKYT-P----SFITYECIITMYGYCDNVSRAREIFDELSKLGK-----DMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 348 ~~~m~~~~~~-~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
+++....... . ...++..+...|...|++++|...+++..+... .....++..+..+|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 6555432100 0 133455555555666666666666555543110 00123445555555555555555555
Q ss_pred HHHHHh
Q 010807 418 FENSHN 423 (500)
Q Consensus 418 ~~~m~~ 423 (500)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-11 Score=110.53 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYG-------KNGMI-------KEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
++|..+|++....... +...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555556555553222 4455555554443 23554 6677777766652112245566666666667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-ccCCHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLP-TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG-YCDNVSRAR 380 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~~~~~~A~ 380 (500)
.|++++|.++|++.++..+. +.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776663222 222 66666666667777777777777776643 233344433333221 257777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VTP--DSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+|+...+... -+...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777766432 256677777777777777777777777777652 343 35566666777777777777777777776
Q ss_pred HC
Q 010807 458 QN 459 (500)
Q Consensus 458 ~~ 459 (500)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-13 Score=127.81 Aligned_cols=299 Identities=12% Similarity=0.031 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC---CC
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM---ER 215 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~---~~ 215 (500)
.....+......+...|++++|...|++..+.+. .+ ...+..+...+. ..|++++|+..|++.... .+
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHhcc
Confidence 3455666777777788888888888887776531 12 235555666666 556677777777765321 01
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhhcCC-------------------
Q 010807 216 -CKPNIVTYNILLRACAQARNVDQVNALFKELHESILA-PD----IYTYNGVMDAYGKNGM------------------- 270 (500)
Q Consensus 216 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~------------------- 270 (500)
.+....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 1122456777888888889998888888876543110 12 3467777778888888
Q ss_pred -HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcC
Q 010807 271 -IKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGKAR 339 (500)
Q Consensus 271 -~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~ 339 (500)
+++|.+.+.+.... +..+ ...++..+...|...|++++|++.+++..+... .++ ..++..+...|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 88888877765432 1111 234567777788888888888888877654211 111 236777777788888
Q ss_pred CHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcC
Q 010807 340 LQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKD-MK----VSTLNAMLEAYCMNG 409 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g 409 (500)
++++|...+++...... ..+ ..++..+...|...|++++|...+++..+.... .+ ..++..+..+|...|
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 321 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALG 321 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 88888888877654210 011 456677777788888888888887776652110 11 456677777778888
Q ss_pred ChhhHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCH
Q 010807 410 LPTEADLLFENSHNM----GVTP-DSSTYKLLYKAYTKANMK 446 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~ 446 (500)
++++|...+++..+. +..+ ...++..+...+...|+.
T Consensus 322 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 322 NHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 888888877775542 1111 134455555566555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-13 Score=126.80 Aligned_cols=298 Identities=9% Similarity=-0.026 Sum_probs=219.5
Q ss_pred CCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 010807 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHES---- 249 (500)
Q Consensus 178 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 249 (500)
.....+......+. ..|++++|+..|++..... +.+ ...|..+...+...|++++|...+++....
T Consensus 7 ~~~~~l~~~g~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 7 ASCLELALEGERLC----KSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 80 (406)
T ss_dssp CCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 34445555556666 6778999999999998642 233 357889999999999999999999987543
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHhccCC------------------
Q 010807 250 ILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ----CK-PDIITFNLLIDSYGKRQA------------------ 305 (500)
Q Consensus 250 g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~-~~~~~~~~li~~~~~~~~------------------ 305 (500)
+..| ...++..+...+...|++++|...+++..+.. .. ....++..+...|...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 2111 24567888899999999999999999876531 11 114478888899999999
Q ss_pred --HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhcc
Q 010807 306 --FDKMEQVFKSLMHS----KEKP-TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYC 373 (500)
Q Consensus 306 --~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~ 373 (500)
+++|++.+++.... +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+...|...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999999876542 1111 245788889999999999999999998865310 122 34788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHc
Q 010807 374 DNVSRAREIFDELSKLGKD-MK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKA 443 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~ 443 (500)
|++++|...+++..+.... .+ ..++..+...|...|++++|...+++.....- ..+ ..++..+...|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999988752111 11 56788899999999999999999998765311 112 56788888999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCCC
Q 010807 444 NMKELVQKLLKRMEQN----GIVPN-KRFFLEALETFSSSLAG 481 (500)
Q Consensus 444 g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~ 481 (500)
|++++|..++++..+. |..+. ..++..+-..+...|..
T Consensus 321 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999999999987754 32222 34455566666666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=129.77 Aligned_cols=269 Identities=9% Similarity=-0.037 Sum_probs=205.7
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCH
Q 010807 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKELHES----IL-APDI 255 (500)
Q Consensus 185 ~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~ 255 (500)
.+...+. ..|++++|+..|+++.... +.+. ..|..+...|...|++++|...+++..+. +. ....
T Consensus 53 ~~g~~~~----~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 53 LEGERLC----NAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHH----HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH----HhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3344455 6778999999999998642 3333 57889999999999999999999987653 11 1234
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHhccCC-----------------HHHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSN----Q-CKPDIITFNLLIDSYGKRQA-----------------FDKMEQVF 313 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~~~-----------------~~~a~~~~ 313 (500)
.++..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 66788889999999999999999987653 1 11234578888899999999 99999999
Q ss_pred HHHHhC----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHH
Q 010807 314 KSLMHS----KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS----FITYECIITMYGYCDNVSRAREIF 383 (500)
Q Consensus 314 ~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~~~~~~A~~~~ 383 (500)
++..+. +. .....++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 876542 11 11235788889999999999999999998866321 112 337888999999999999999999
Q ss_pred HHHHHCCCC-----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 384 DELSKLGKD-----MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG----V-TPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 384 ~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
++..+.... ....++..+..+|...|++++|...+++..... . .....++..+...|...|++++|..++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988763211 125678889999999999999999999876531 0 112457888899999999999999999
Q ss_pred HHHHHC
Q 010807 454 KRMEQN 459 (500)
Q Consensus 454 ~~m~~~ 459 (500)
++..+.
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-12 Score=125.11 Aligned_cols=214 Identities=10% Similarity=0.012 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV-DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
...+++++..+++.... .+.+...|..+...+...|++ ++|++.|++..+.... +...|..+...|.+.|++++|.
T Consensus 81 ~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 34467777777776642 245777888888888888888 8888888888776433 5777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKR---------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKA-------- 338 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 338 (500)
+.|++..+. .|+...+..+..+|... |++++|++.|++..+..+ .+...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhcccc
Confidence 888887776 35567777777777777 777777777777776533 2566677777777666
Q ss_pred CCHhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 339 RLQGKAEYVFQKMTAMKYT---PSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
|++++|...|++..+.. + -+...|..+..+|...|++++|.+.|++..+... -+...+..+..++...|++++|+
T Consensus 235 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666542 1 2455666666666666666666666666655432 24555566666666666666655
Q ss_pred HHH
Q 010807 416 LLF 418 (500)
Q Consensus 416 ~~~ 418 (500)
+.+
T Consensus 313 ~~~ 315 (474)
T 4abn_A 313 ESK 315 (474)
T ss_dssp HHT
T ss_pred HHh
Confidence 544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=103.99 Aligned_cols=167 Identities=14% Similarity=0.139 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+...|..+..+|.+.|++++|++.|++.++..+. +..++..+..+|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4555666666666666666666666666654322 55666666666666666666666666665543 334555556666
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
.+...++++.|...+.+..+... -+...+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 66666666666666666665432 246666666666667777777777776666543 3355666666666777777777
Q ss_pred HHHHHHHHHHC
Q 010807 449 VQKLLKRMEQN 459 (500)
Q Consensus 449 a~~~~~~m~~~ 459 (500)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777666643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-11 Score=118.17 Aligned_cols=238 Identities=11% Similarity=0.027 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc----CCH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQAR---NVDQVNALFKELHESILAPDIYTYNGVMDAYGKN----GMI 271 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~ 271 (500)
..+++..++...... .|+ .+..|...|...| +.++|++.|+...+.|.. +...+..+...|... +++
T Consensus 160 ~~~~a~~~~~~a~~~---~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 160 HLDDVERICKAALNT---TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp GHHHHHHHHHHHTTT---CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CHHHHHHHHHHHHcC---CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 455555555555431 233 6777777777777 778888888887777644 555555666666554 678
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHhH
Q 010807 272 KEMESVLSRMKSNQCKPDIITFNLLIDS-Y--GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-----LQGK 343 (500)
Q Consensus 272 ~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~ 343 (500)
++|++.|++.. . -+...+..|... | ...+++++|++.|++..+.| +...+..|...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 88888888776 3 244555555555 3 45778888888888877665 5666677777666 44 7788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHH
Q 010807 344 AEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEAD 415 (500)
Q Consensus 344 a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 415 (500)
|...|++.. .-+...+..|...|.. ..+.++|...|+...+.| +......|...|.. ..+..+|.
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 888877766 2356666667766665 347888888888877766 34455566666653 34677888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.+|+...+.| .++.......+......++..+|..+.++..+
T Consensus 379 ~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 379 VFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8888877766 22222222222222333455566666665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-12 Score=124.74 Aligned_cols=216 Identities=9% Similarity=-0.031 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMI-KEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 313 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (500)
.++++++.+++...... .+...+..+...+...|++ ++|++.|++..+.... +...|..+..+|.+.|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46677778877665433 4788999999999999999 9999999999887433 6889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc--------CCH
Q 010807 314 KSLMHSKEKPTLPTFNSMIINYGKA---------RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------DNV 376 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------~~~ 376 (500)
++..+.. |+...+..+...|... |++++|...+++..+.. +-+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999854 6678999999999999 99999999999998864 44688999999999988 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLK 454 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 454 (500)
++|...|++..+.... -+...|..+..+|...|++++|+..|++..+.. +-+...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999986431 378999999999999999999999999998864 3467788999999999999999988665
Q ss_pred HH
Q 010807 455 RM 456 (500)
Q Consensus 455 ~m 456 (500)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-13 Score=121.59 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=167.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-----
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHES-------ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----- 284 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----- 284 (500)
+.+..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334667888888999999999999999888763 22234566788888889999999999998887654
Q ss_pred -CC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-
Q 010807 285 -QC-KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM- 354 (500)
Q Consensus 285 -~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 354 (500)
+. .....++..+...|...|++++|++.|++..+. +. ......+..+...|...|++++|..+++.+.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 224567788888999999999999999887654 12 223567888888999999999999999888764
Q ss_pred -----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-------CCC-------CHHHHHHHHHHHHhcCChhhH
Q 010807 355 -----KYTP-SFITYECIITMYGYCDNVSRAREIFDELSKLG-------KDM-------KVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 355 -----~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~A 414 (500)
+..| ...++..+...|...|++++|.+.++++.+.. ..+ ....+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 24577888899999999999999999887521 111 122233334445556677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
...+....... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777766542 33466788899999999999999999998765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-11 Score=102.42 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG 336 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 336 (500)
.|..+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..+........ .+...+..+...+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHH
Confidence 3444444444444444444444444333221 334444444444444444444444444443321 13344444444444
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
..++++.+...+....... +.+...+..+...|...|++++|++.|++..+..+ .+..+|..+..+|.+.|++++|+.
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555544444432 22344445555555555555555555555554432 244555555555555555555555
Q ss_pred HHHHHHh
Q 010807 417 LFENSHN 423 (500)
Q Consensus 417 ~~~~m~~ 423 (500)
.|++.++
T Consensus 163 ~~~~al~ 169 (184)
T 3vtx_A 163 YFKKALE 169 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=121.91 Aligned_cols=275 Identities=12% Similarity=0.062 Sum_probs=134.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC----CCCCC
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGM----ERCKP 218 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 218 (500)
+......+...|++++|...|+++.+.. |+ ...+..+...+. ..|++++|+..+++.... ...+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYF----YLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 3444555566666666666666665542 22 233444444444 344455555555554321 00011
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCC--------------------HHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGM--------------------IKE 273 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~ 273 (500)
...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 244566777777777888888777776544210 011 2345555566666666 555
Q ss_pred HHHHHHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010807 274 MESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVF 348 (500)
Q Consensus 274 a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 348 (500)
|.+.+++.... +.. .....+..+...|...|++++|.+.+++..+...
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------------- 214 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---------------------------
Confidence 55555544321 100 0122344444445555555555555544432100
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 349 QKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKD-M----KVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 349 ~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
..+. .....++..+...+...|++++|...+++..+.... . ...++..+...|...|++++|...+++..
T Consensus 215 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 215 ----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp ----HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0000 001224445555555555555555555544431100 0 13455556666666666666666666554
Q ss_pred hC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 423 NM----GV-TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 423 ~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.. +- .....++..+...|.+.|++++|..++++..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 32 10 011335556666666677777777766666543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-11 Score=109.10 Aligned_cols=218 Identities=7% Similarity=0.003 Sum_probs=144.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 010807 201 AKALGYFQKMKGMERCKPNIVTYNILLRACA-------QARNV-------DQVNALFKELHES-ILAPDIYTYNGVMDAY 265 (500)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~ 265 (500)
++|+..|++..... +.+...|..++..+. +.|++ ++|..+|++..+. .. -+...|..+...+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 34555555554321 345555555555554 24664 7777777777763 22 2556777777777
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHhH
Q 010807 266 GKNGMIKEMESVLSRMKSNQCKPDII-TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYG-KARLQGK 343 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~ 343 (500)
.+.|++++|.++|++..+.... +.. .|..++..+.+.|++++|..+|++..+... .+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 7777888888888777764222 232 677777777777888888888888776543 23444443333322 3688888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-KDM--KVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 344 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877643 3357777888888888888888888888888752 233 466788888888888888888888888
Q ss_pred HHhC
Q 010807 421 SHNM 424 (500)
Q Consensus 421 m~~~ 424 (500)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=119.08 Aligned_cols=263 Identities=9% Similarity=-0.041 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHH
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPD----IYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK-PDIIT 292 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~ 292 (500)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444555666667777777777766654322 2 245566666666777777777766664432 111 12445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HhHHHHH
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPT----LPTFNSMIINYGKARL--------------------QGKAEYV 347 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~ 347 (500)
+..+...|...|++++|...+++..+... ..+ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66677777777777777777776543211 112 3466777777777777 7888777
Q ss_pred HHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 348 FQKMTAM----KYT-PSFITYECIITMYGYCDNVSRAREIFDELSKL----GK-DMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 348 ~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
+++.... +.. ....++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7765432 111 12456788888899999999999999887652 11 11244788899999999999999999
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCCCCCCc
Q 010807 418 FENSHNMGV-TPD----SSTYKLLYKAYTKANMKELVQKLLKRMEQN----GIVPN-KRFFLEALETFSSSLAGSQSG 485 (500)
Q Consensus 418 ~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~~~ 485 (500)
+++...... ..+ ..++..+...+...|++++|..++++..+. +-.+. ...+..+-..+...|+.+...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 998765310 112 567888889999999999999999988754 21111 345667777777777665443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=118.02 Aligned_cols=295 Identities=9% Similarity=-0.066 Sum_probs=204.1
Q ss_pred ccCCHHHHHHHHHHHHHcc-CCCCC--HHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHcCCCCCHHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQR-WYIAD--TGIYSKLIAV--MGKKGQTRLAM-----------WLFSEMRNSGCRPDPSVYN 184 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~~~~ 184 (500)
+.+++++|..+++.+.+.- ....| ...|..++.. ..-.++++.+. +.++.+.... .+...+.
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~l 101 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGLL 101 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhHH
Confidence 4588888988888876542 12123 3334444332 12223444444 6666665421 1111111
Q ss_pred ------HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C
Q 010807 185 ------ALITAHLHTRDKAKALAKALGYFQKMKGMERCKP----NIVTYNILLRACAQARNVDQVNALFKELHESILA-P 253 (500)
Q Consensus 185 ------~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p 253 (500)
.....+. ..|++++|+..|++......-.+ ...+|..+...|...|++++|+..+++..+.-.. +
T Consensus 102 ~~~~~~~~g~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 102 EYYFNFFRGMYEL----DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 1223333 66789999999999875321122 3467899999999999999999999987653111 1
Q ss_pred -----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----
Q 010807 254 -----DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS---- 319 (500)
Q Consensus 254 -----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 319 (500)
...+++.+...|...|++++|++.+++..+. +.. ....++..+..+|...|++++|++.|++..+.
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 2357888889999999999999999987643 111 11247888999999999999999999988762
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCC
Q 010807 320 KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGK 391 (500)
Q Consensus 320 ~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~ 391 (500)
+. +....++..+...|...|++++|...+++..+.. -+.....+..+...|...|+ +++|..++++... .
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~ 335 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--Y 335 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--H
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--H
Confidence 23 3346789999999999999999999999876531 11123346778888999999 7777777776521 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 392 DMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+.....+..+...|...|++++|...+++..+
T Consensus 336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22345778899999999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-10 Score=111.32 Aligned_cols=311 Identities=9% Similarity=0.013 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHc----CcchH---HHHHHHHHHHH
Q 010807 142 IADTGIYSKLIAVM--GKKGQTRLAMWLFSEMRNS--GCRPD--PSVYNALITAHLH----TRDKA---KALAKALGYFQ 208 (500)
Q Consensus 142 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~~~~----~~~~~---~~~~~a~~~~~ 208 (500)
.|+..+-+.+-..| .+.+++++|..+++++.+. .++.| ...|-.++..-.. ..... +......+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34455555555555 6788888888888887652 22223 2333333322110 00000 01111114444
Q ss_pred HhhcCCCCCC-C-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 010807 209 KMKGMERCKP-N-I---VTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYGKNGMIKEMESVL 278 (500)
Q Consensus 209 ~~~~~~~~~~-~-~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~ 278 (500)
.+.... .+ + . ..|......+...|++++|+..|++..+... .++ ..++..+...|...|++++|...+
T Consensus 87 ~i~~~~--~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 87 TIETPQ--KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHGGG--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhccC--CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 443210 11 1 1 1233455667789999999999999876421 122 456788889999999999999999
Q ss_pred HHHHhC----CC-CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHH
Q 010807 279 SRMKSN----QC-KP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEK-PTLPTFNSMIINYGKARLQGKAEYV 347 (500)
Q Consensus 279 ~~m~~~----~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 347 (500)
.+..+. +. .+ ...+++.+..+|...|++++|++.|++..+. +.. ....++..+..+|...|++++|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 987653 11 11 2557888999999999999999999887652 111 1235788899999999999999999
Q ss_pred HHHHHh-----CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---hhhHH
Q 010807 348 FQKMTA-----MKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG----KDMKVSTLNAMLEAYCMNGL---PTEAD 415 (500)
Q Consensus 348 ~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~ 415 (500)
+++..+ .. +....++..+...|.+.|++++|...+++..+.. -+.....++.+...|...|+ +.+|+
T Consensus 245 ~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al 323 (378)
T 3q15_A 245 FQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323 (378)
T ss_dssp HHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 999877 43 3337788999999999999999999999988732 12224456667777777888 78888
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..+++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 324 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 324 SYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888762 22222 34667788899999999999999998864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=120.87 Aligned_cols=247 Identities=15% Similarity=0.070 Sum_probs=120.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC---
Q 010807 144 DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-------GCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGM--- 213 (500)
Q Consensus 144 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~--- 213 (500)
+..++..+...+...|++++|..+|+++.+. ........+..+...+. ..|++++|+..|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----DQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888887652 11222344445555555 445566666666555431
Q ss_pred ---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 214 ---ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------ILAP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 214 ---~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
...+....++..+...|...|++++|...|+++.+. +..| ....+..+...+...|++++|.++++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111223445666667777777777777777666543 1111 233455555556666666666666655544
Q ss_pred C------CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010807 284 N------QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK-------EKPTLPTFNSMIINYGKARLQGKAEYVFQ 349 (500)
Q Consensus 284 ~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (500)
. +..| ...++..+..+|...|++++|++.++++.+.. ..+.......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------- 242 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------- 242 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------
Confidence 2 1111 22344555555555566666655555554310 0000000000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 350 KMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 350 ~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
....+..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|..+|++..+
T Consensus 243 ---------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 ---------HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01122223333334444455555555554432 22345566666667777777777776666554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.1e-10 Score=105.44 Aligned_cols=272 Identities=11% Similarity=-0.002 Sum_probs=164.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC----
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS----VYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN---- 219 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 219 (500)
+......+...|++++|...+++........+.. .++.+...+. ..|++++|...+++......-..+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4445556667888888888888877653222222 3334444454 567778887777776532110112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC----C
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHES----ILA--P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK----P 288 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----~ 288 (500)
..+++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... .
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 234566777888888888888888876542 221 2 2345566777788888888888888876653211 1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC--CHHHHH----HHHHHHHhcCCHhHHHHHHHHHHhCCCCC---C
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP--TLPTFN----SMIINYGKARLQGKAEYVFQKMTAMKYTP---S 359 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~ 359 (500)
...++..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...++........+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 23456677777788888888888887765431111 111111 22334667788888888877765533111 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKL----GKDMKV-STLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
...+..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234556667777778888887777766542 211122 2555566667777777777777776553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-10 Score=96.59 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=102.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
.+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344555556666666666666666554422 245566666666666666666666666665542 334556666666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 372 YCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777776666643 2356666666777777777777777777766553 3345666667777777777777777
Q ss_pred HHHHHHH
Q 010807 452 LLKRMEQ 458 (500)
Q Consensus 452 ~~~~m~~ 458 (500)
++++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-10 Score=108.24 Aligned_cols=225 Identities=9% Similarity=-0.004 Sum_probs=171.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CC-CHHHHHHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESIL-----AP-DIYTYNGVMDAY 265 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p-~~~~~~~ll~~~ 265 (500)
..|++++|+..|++......-.++ ..++..+...|...|+++.|...+++..+... .+ ...+++.+...|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 667899999999998753221233 55788899999999999999999998765311 11 245778889999
Q ss_pred hhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHH
Q 010807 266 GKNGMIKEMESVLSRMKSN----QCK-PDIITFNLLIDSYGKRQAFDKMEQVFKSLMH-----SKEKPTLPTFNSMIINY 335 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~ 335 (500)
...|++++|.+.+++..+. +.. ....++..+..+|...|++++|++.|++..+ .... ...++..+...|
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~ 271 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTL 271 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHH
Confidence 9999999999999987653 211 1235678899999999999999999998876 4333 377889999999
Q ss_pred HhcCCHhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 010807 336 GKARLQGKAEYVFQKMTAMK----YTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN 408 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 408 (500)
.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|...++.... .+.....+..+...|...
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHC
Confidence 99999999999999987742 12224456777778888888 7777777776221 112245677889999999
Q ss_pred CChhhHHHHHHHHHh
Q 010807 409 GLPTEADLLFENSHN 423 (500)
Q Consensus 409 g~~~~A~~~~~~m~~ 423 (500)
|++++|...|++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-10 Score=94.86 Aligned_cols=127 Identities=14% Similarity=0.050 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 45 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 45 ALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHH
Confidence 3333333333444444444443333321 1133334444444444444444444444443322 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 123 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544444444432 1234444445555555555555555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.3e-08 Score=99.25 Aligned_cols=394 Identities=11% Similarity=0.067 Sum_probs=220.1
Q ss_pred cchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHH------------------cccCC---HHHHHHHHH
Q 010807 75 EELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEEL------------------GKSDK---WLQCLEVFR 133 (500)
Q Consensus 75 ~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l------------------~~~~~---~~~A~~~~~ 133 (500)
+.+....+-+.+.+.-.+.......+......+....++.+++.+ .+.+. ++.+..+|+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 334444555555544445555555555544444444444433332 23466 899999999
Q ss_pred HHHHccCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHcCc-----chH
Q 010807 134 WMQKQRWYIADTGIYSKLIAVMGKKGQT--------RLAMWLFSEMRN-SGC-RPD-PSVYNALITAHLHTR-----DKA 197 (500)
Q Consensus 134 ~~~~~~~~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~li~~~~~~~-----~~~ 197 (500)
........+|++..|...+....+.++. +...++|+.... .|. .++ ...|...+....... ...
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9887632248999999988877776654 334578887664 466 554 567877776543211 134
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHH-------------------
Q 010807 198 KALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ-------------ARNVDQVNALFKE------------------- 245 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~------------------- 245 (500)
++++.+..+|++..... ...-..+|......-.. ..+++.|...+.+
T Consensus 208 ~~~~~~R~iy~raL~iP-~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQP-MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHTTSC-CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred hHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 56788888888887521 11112233211111000 0112223333322
Q ss_pred ------------------------------------------------HHhCCCCCCHHHHHHHHHHHhhcCCHHHHH-H
Q 010807 246 ------------------------------------------------LHESILAPDIYTYNGVMDAYGKNGMIKEME-S 276 (500)
Q Consensus 246 ------------------------------------------------m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~-~ 276 (500)
.+..- .-+...|......+...|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 22111 112222333333344556666675 7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHH
Q 010807 277 VLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK---------EKPT------------LPTFNSMIINY 335 (500)
Q Consensus 277 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~ 335 (500)
+|++.... ++.+...|-..+....+.|+++.|.++|+.++... ..|+ ..+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 77777653 33355556666677777777888887777776531 0121 23566666666
Q ss_pred HhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 336 GKARLQGKAEYVFQKMTAM-KYTPSFITYECIITMYGYC-DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
.+.|..+.|..+|....+. + ......|...+..-.+. ++.+.|..+|+...+. .+-+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH
Confidence 6677777888888777765 2 12233333332222233 4477888888777765 33456667777777777788888
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 414 ADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 414 A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.++|.+.- |+......++..|
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 888888777653211 23466666666677788888888887777653 3333333334444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-10 Score=117.15 Aligned_cols=163 Identities=9% Similarity=-0.005 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
.+|+.+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.|++.++.... +...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34444555555555555555555554443222 3445555555555555555555555555553222 455556666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
...|++++|...|++..+.. +-+...|..+..+|...|++++|++.|++..+... -+...|..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHH
Confidence 66666666666666655532 22355666666666666666666666666666442 24566666666666666666666
Q ss_pred HHHHHHH
Q 010807 416 LLFENSH 422 (500)
Q Consensus 416 ~~~~~m~ 422 (500)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-10 Score=118.25 Aligned_cols=166 Identities=7% Similarity=0.023 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+...|+.|..+|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|...|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4678999999999999999999999999886433 68899999999999999999999999999864 345889999999
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
+|...|++++|++.|++..+... -+...|+.+..+|...|++++|++.|++.++.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999998754 368899999999999999999999999998864 3367899999999999999999
Q ss_pred HHHHHHHHHH
Q 010807 449 VQKLLKRMEQ 458 (500)
Q Consensus 449 a~~~~~~m~~ 458 (500)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-08 Score=103.35 Aligned_cols=379 Identities=12% Similarity=0.032 Sum_probs=241.4
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCCH
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQ---TRLAMWLFSEMRNSG-CRPDP 180 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~ 180 (500)
...+......+++.+.+.+.++.+..+|+.+... ++.....|...+..-.+.|+ ++.+..+|++.+... ..|++
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 3456677778899888889999999999999987 67888999999999999999 999999999998763 24888
Q ss_pred HHHHHHHHHHHcCcc----hHHHHHHHHHHHHHhhcCCCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHH
Q 010807 181 SVYNALITAHLHTRD----KAKALAKALGYFQKMKGMERC-KP-NIVTYNILLRACA---------QARNVDQVNALFKE 245 (500)
Q Consensus 181 ~~~~~li~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~ll~~~~---------~~g~~~~a~~~~~~ 245 (500)
..|...+......++ ..+..+...++|+.....-|. .+ +...|...+.... ..++++.+.++|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 888887765542211 133456677888887654455 44 4568888886544 23457888899998
Q ss_pred HHhCCCCCCHHHHH---HHHHHHh----------hcCCHHHHHHHHHH--------------------------------
Q 010807 246 LHESILAPDIYTYN---GVMDAYG----------KNGMIKEMESVLSR-------------------------------- 280 (500)
Q Consensus 246 m~~~g~~p~~~~~~---~ll~~~~----------~~g~~~~a~~~~~~-------------------------------- 280 (500)
++......-..+|. .+...+. ...+++.|...+.+
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 88542221122221 1111100 00111222222222
Q ss_pred -----------------------------------HHhCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHhCCCCCC
Q 010807 281 -----------------------------------MKSNQCKPDIITFNLLIDSYGKRQAFDKME-QVFKSLMHSKEKPT 324 (500)
Q Consensus 281 -----------------------------------m~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 324 (500)
.... ++-+...|-..+..+...|+.++|. ++|++.... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 2211 0112223333333344567777786 888888764 4446
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMK---------YTPS------------FITYECIITMYGYCDNVSRAREIF 383 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~~~~~~A~~~~ 383 (500)
...|...+....+.|++++|..+|+.+.... -.|+ ..+|...+....+.|+++.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6677778888888899999999998887631 0132 235777777777888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 010807 384 DELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIV 462 (500)
Q Consensus 384 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (500)
....+.-.......|...+..-.+. ++.+.|..+|+..++. ++-+...+...+......|+.+.|..+|++.......
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9888751112233443333333333 4589999999988876 3445666678888888889999999999988866432
Q ss_pred C--CHHHHHHHHHHHhcCCCCCCCccch
Q 010807 463 P--NKRFFLEALETFSSSLAGSQSGSAK 488 (500)
Q Consensus 463 p--~~~~~~~ll~~~~~~g~~~~~~~~~ 488 (500)
+ ....|...++-=...|+.+....+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2 2234555554444555554433333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-09 Score=102.62 Aligned_cols=285 Identities=10% Similarity=0.013 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHh
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNI----VTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAYG 266 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~ 266 (500)
..|++++|...+++...... ..+. ..++.+...+...|++++|...+++...... ..+ ..++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 56779999999999775331 2222 2567778889999999999999998765311 112 233567778899
Q ss_pred hcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHH
Q 010807 267 KNGMIKEMESVLSRMKSN----QCK--P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK----PTLPTFNSMIINY 335 (500)
Q Consensus 267 ~~g~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~ 335 (500)
..|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 999999999999987653 222 2 2445677888899999999999999988754222 1245788888899
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPS--FITYE----CIITMYGYCDNVSRAREIFDELSKLGKDM---KVSTLNAMLEAYC 406 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~ 406 (500)
...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999998875321111 22221 23345778999999999999887643221 1335677889999
Q ss_pred hcCChhhHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC----CCHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNM----GVTPDS-STYKLLYKAYTKANMKELVQKLLKRMEQN----GIV----PNKRFFLEALE 473 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~----p~~~~~~~ll~ 473 (500)
..|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..+. |.. ........+++
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll~ 344 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR 344 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHHHHHHH
Confidence 999999999999887542 222223 36667778899999999999999887653 332 12234566777
Q ss_pred HHhcCCCC
Q 010807 474 TFSSSLAG 481 (500)
Q Consensus 474 ~~~~~g~~ 481 (500)
.+......
T Consensus 345 ~~~~~~~~ 352 (373)
T 1hz4_A 345 QLIQLNTL 352 (373)
T ss_dssp HHHHTTCS
T ss_pred HHHhCCCC
Confidence 77766665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-09 Score=95.09 Aligned_cols=206 Identities=8% Similarity=-0.039 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567788888888899999999999998888765467777777888888999999999999988876433 567788888
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTL-------PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS---FITYECII 367 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li 367 (500)
.+|...|++++|++.|++..+..+. +. ..|..+...+...|++++|...|+...+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 8889999999999999888875332 44 45777888888889999999999888875 344 45667777
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLL 436 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 436 (500)
.+|... +..+++.+...+. .+...|.... ....+.+++|+..|++..+.. +-+..+...+
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 776543 3444555555432 2344454443 334566889999999888763 2234444433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-09 Score=95.93 Aligned_cols=208 Identities=9% Similarity=0.019 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
.|...+......+...|++++|+..|++..+....++...+..+..++...|++++|++.|++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567888888999999999999999999988765467777777899999999999999999999886433 677888999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSF-------ITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLE 403 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~ 403 (500)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++..+... - +...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS-KKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC-HHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Confidence 99999999999999999988854 2344 4578888888999999999999999988642 2 2567777777
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALE 473 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 473 (500)
+|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+......++.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 776544 34455555543 33445554443 33456789999999999865 355544444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=105.45 Aligned_cols=229 Identities=15% Similarity=0.089 Sum_probs=159.0
Q ss_pred HHcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 010807 231 AQARNVDQVNALFKELHE-------SILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN------QC-KPDIITFNLL 296 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~~-~~~~~~~~~l 296 (500)
...|++++|+..|++..+ ...+....++..+...|...|++++|+..+++..+. +- .....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 346777777777766654 222234677888999999999999999999998754 22 2245678889
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCC-CHHH
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHS------KE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM------KYTP-SFIT 362 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~ 362 (500)
..+|...|++++|++.|++.... .. +....++..+...|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 224567888999999999999999999998764 1122 3567
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC-------C-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH---hCC--CCCC
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKL-------G-KDMKVSTLNAMLEAYCMNGLPTEADLLFENSH---NMG--VTPD 429 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~-------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~--~~p~ 429 (500)
+..+...|...|++++|..+++++.+. . .......|..+...+...+....+..+..... ..+ ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999988763 1 11223344444444444444433333221111 111 1123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 430 SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 430 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
..++..+...|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888899999999999999999988753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=104.86 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHhhcC
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES------IL-APDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~g 269 (500)
...+++|++++++... ...+....++..+...|...|++++|+..++++.+. +- .....++..+...|...|
T Consensus 21 ~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 21 VPLCKQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 4457777777777764 122334678999999999999999999999998754 22 223567888999999999
Q ss_pred CHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHH
Q 010807 270 MIKEMESVLSRMKSN------Q-CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS------KEKP-TLPTFNSMIINY 335 (500)
Q Consensus 270 ~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~ 335 (500)
++++|.+.+.+.... . .+....++..+...|...|++++|+..|++..+. +..| ...++..+...|
T Consensus 100 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 179 (283)
T 3edt_B 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY 179 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999998764 1 1234667888999999999999999999998764 1122 356788999999
Q ss_pred HhcCCHhHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010807 336 GKARLQGKAEYVFQKMTAM-------KYTP-SFITYECIITMYGYCDN------VSRAREIFDELSKLGKDMKVSTLNAM 401 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~~~------~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (500)
...|++++|...++++.+. ...+ ....+..+...+...+. +..+...++..... .+....++..+
T Consensus 180 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 258 (283)
T 3edt_B 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSL 258 (283)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 9999999999999998763 1112 22233333333333222 23333333222211 12235678889
Q ss_pred HHHHHhcCChhhHHHHHHHHHhC
Q 010807 402 LEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+|...|++++|..+|++..+.
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-09 Score=96.67 Aligned_cols=176 Identities=7% Similarity=-0.076 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCH
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----ILAPD-IYTYNGVMDAYGKNGMI 271 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~ 271 (500)
.+++++|...|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++
T Consensus 30 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 30 SYKFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 44577777777665 23566778888888777766442 21111 34566666666667777
Q ss_pred HHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCC
Q 010807 272 KEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKR-QAFDKMEQVFKSLMHSKEKP-T----LPTFNSMIINYGKARL 340 (500)
Q Consensus 272 ~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~~~ 340 (500)
++|+..+++..+. |-.. -..+++.+..+|... |++++|+..|++..+..... + ..++..+...+...|+
T Consensus 94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 7776666665432 1000 023444555555553 55555555555544321100 0 1234444444444555
Q ss_pred HhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSF------ITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+++|...|+...+....... ..|..+..++...|++++|...|++..+
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555444443211110 1233344444444444444444444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-09 Score=95.88 Aligned_cols=212 Identities=8% Similarity=-0.034 Sum_probs=156.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCKPD-IITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a 309 (500)
++++|...|++. ...|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488898888776 34577899999999999887653 32222 56889999999999999999
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhccCCHHH
Q 010807 310 EQVFKSLMHSKEKP-T----LPTFNSMIINYGKA-RLQGKAEYVFQKMTAMKYT-PS----FITYECIITMYGYCDNVSR 378 (500)
Q Consensus 310 ~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~ 378 (500)
+..|++.++..... + ..+++.+...|... |++++|...|++..+.... .+ ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999876531111 1 45788999999996 9999999999988763211 11 3568889999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--HcC
Q 010807 379 AREIFDELSKLGKDMKV------STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD------SSTYKLLYKAYT--KAN 444 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~--~~g 444 (500)
|+..|++..+....... ..|..+..++...|++++|+..|++..+. .|+ ...+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999986543221 26778888999999999999999998864 332 123445566664 456
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 010807 445 MKELVQKLLKRMEQNGIVPNK 465 (500)
Q Consensus 445 ~~~~a~~~~~~m~~~g~~p~~ 465 (500)
++++|+..|+++. .+.|..
T Consensus 255 ~~~~A~~~~~~~~--~l~~~~ 273 (292)
T 1qqe_A 255 QLSEHCKEFDNFM--RLDKWK 273 (292)
T ss_dssp THHHHHHHHTTSS--CCCHHH
T ss_pred HHHHHHHHhccCC--ccHHHH
Confidence 7888888876554 234444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=80.10 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
|..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|..+++++...+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 3444444555555555555555544432 22344444555555555555555555555554331 234455555555555
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 408 NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
.|++++|..+++++.... +.+...+..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555432 22344555555555555666666555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-08 Score=78.78 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
|..+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++...+. .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHH
Confidence 444555555555666666555555543322 344455555555555555555555555544322 134444445555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
.|++++|.++++++..... .+...+..+...+...|++++|...++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 5555555555555444321 1344444444444445555555444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-08 Score=83.69 Aligned_cols=176 Identities=11% Similarity=0.014 Sum_probs=87.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHhHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR----LQGKAEYVFQ 349 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~ 349 (500)
|++.|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 34444444444544555555555555554432 33444444444444 3 4555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChhhHHHHHHH
Q 010807 350 KMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKD-MKVSTLNAMLEAYCM----NGLPTEADLLFEN 420 (500)
Q Consensus 350 ~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 420 (500)
...+.| +...+..|...|.. .+++++|.+.|++..+.+.. .++..+..|...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 34444555555544 55566666666655554411 014555555555555 5556666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 010807 421 SHNMGVTPDSSTYKLLYKAYTKA-N-----MKELVQKLLKRMEQNGI 461 (500)
Q Consensus 421 m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~ 461 (500)
..+. ..+...+..|...|... | +.++|..+|++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 5554 12333455555555432 2 56666666666665553
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-08 Score=88.26 Aligned_cols=178 Identities=12% Similarity=-0.029 Sum_probs=77.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 352 (500)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|...++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444333 22333333444555555555555555555444332 1134444455555555555555555555554
Q ss_pred hCCCCC-----CHHHHHHHHHHHh--c--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 353 AMKYTP-----SFITYECIITMYG--Y--CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 353 ~~~~~~-----~~~~~~~li~~~~--~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+. .| +..+...+..++. . .++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 23 1333333333311 1 124555555555554432 2222222233345555555555555554332
Q ss_pred C-----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 424 M-----GV----TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 424 ~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
. .. +-|+.++..+|......|+ +|.+++.++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 1 00 1233444444444444444 44555555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-08 Score=90.07 Aligned_cols=210 Identities=13% Similarity=-0.008 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-C-CHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPD---IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-P-DII 291 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~ 291 (500)
+.+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|+..|++..+.... | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345666777777788888888888888888775432 2 566777777888888888888888887765321 1 244
Q ss_pred HHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHH
Q 010807 292 TFNLLIDSYGK--------RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITY 363 (500)
Q Consensus 292 ~~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 363 (500)
.+..+..++.. .|++++|+..|+++++..+. +......+.. +..+... ....+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56666677777 78888888888887765332 2222211100 0000000 01113
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChhhHHHHHHHHHhCCCCCC--
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMN----------GLPTEADLLFENSHNMGVTPD-- 429 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~-- 429 (500)
..+...|...|++++|+..|+.+.+..+.. ....+..+..+|... |++++|+..|+++.+. .|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 455666677777777777777766643221 234566666666654 6667777777776664 233
Q ss_pred --HHHHHHHHHHHHHcCCHHH
Q 010807 430 --SSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 430 --~~~~~~li~~~~~~g~~~~ 448 (500)
......+...+...+++++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 2334444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.9e-08 Score=86.81 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=69.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
+..+|.+.|++++|+..|++.++..+. +...+..+..++...|++++|...|++..+.. +-+..++..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 556666666666666666666654322 55666666666666666666666666666543 2345556666555544432
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 376 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 376 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
...+...+..... ..|....+..+..++...|++++|+..|++.++. .|+...
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 2333334433321 1122222333444455566666666666666654 455433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=91.22 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C-CHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD---IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-P-TLPTF 328 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~ 328 (500)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..+|.+.|++++|+..|++.++..+. + ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4455555566666677777777777776665322 2 455566666666677777777777766654221 1 23445
Q ss_pred HHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 010807 329 NSMIINYGK--------ARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLN 399 (500)
Q Consensus 329 ~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (500)
..+..++.. .|++++|...|+++.+.. |+ ......+ ..+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence 555666666 666666666666665532 22 1111111 111111100 012246
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 010807 400 AMLEAYCMNGLPTEADLLFENSHNMGVT-P-DSSTYKLLYKAYTKA----------NMKELVQKLLKRMEQN 459 (500)
Q Consensus 400 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 459 (500)
.+..+|.+.|++++|+..|+++++.... + ....+..+..+|... |++++|...+++..+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6788999999999999999999875311 1 345778888888866 8999999999999875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-08 Score=85.97 Aligned_cols=173 Identities=10% Similarity=-0.003 Sum_probs=117.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHhhcCCHHHHHHHHHHHHhCCC
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNG----------------VMDAYGKNGMIKEMESVLSRMKSNQC 286 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~----------------ll~~~~~~g~~~~a~~~~~~m~~~~~ 286 (500)
+......+...|++++|+..|++..+..+. +...|.. +..+|.+.|++++|+..|++..+...
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 333445566677777777777776654322 3344444 78888899999999999999887754
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCHHHHH
Q 010807 287 KPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL--QGKAEYVFQKMTAMKYTPSFITYE 364 (500)
Q Consensus 287 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~ 364 (500)
. +...+..+..+|...|++++|+..|++.++..+. +..+|..+..+|...|. .+.+...++.... ..|....+.
T Consensus 86 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 86 N-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 3 7788888999999999999999999998886433 67788888888766544 3344555554432 122233344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 365 CIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
....++...|++++|...|++..+.. |+......+.
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~ 197 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 45666677889999999999988754 5655444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-06 Score=82.06 Aligned_cols=224 Identities=11% Similarity=0.001 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 237 DQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 237 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
+.+..+|+++..... .+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHH
Confidence 345566777665432 34666777777777788888888888887776 223322222 2111111111 2222
Q ss_pred HhCC---------CCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHH
Q 010807 317 MHSK---------EKP---TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY-CDNVSRAREIF 383 (500)
Q Consensus 317 ~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~~~~~~A~~~~ 383 (500)
.+.- ..+ ....|...+....+.+..+.|..+|+.. ... ..+...|......-.. .++.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 1110 001 1234555666666677899999999988 321 2345555433322222 33699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--C-
Q 010807 384 DELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN--G- 460 (500)
Q Consensus 384 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g- 460 (500)
+...+.- +-++..|...+....+.|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.+. +
T Consensus 344 e~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~ 417 (493)
T 2uy1_A 344 SSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKAD 417 (493)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhccc
Confidence 9888753 2346667777888888999999999999873 24677887777777889999999988888742 1
Q ss_pred --CCCC------------HHHHHHHHHHHhcC
Q 010807 461 --IVPN------------KRFFLEALETFSSS 478 (500)
Q Consensus 461 --~~p~------------~~~~~~ll~~~~~~ 478 (500)
-.|. ..++..++..|...
T Consensus 418 ~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~ 449 (493)
T 2uy1_A 418 AILPPLPPREHNVQMEGILGRYHCFLDSFNFL 449 (493)
T ss_dssp CCBCCCCCC--CCCCCHHHHHHHHHHHHHCBT
T ss_pred ccCCcccccccHHHHHHHhhhHHHHHHHhhhh
Confidence 1111 25678888888543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-06 Score=79.98 Aligned_cols=221 Identities=7% Similarity=-0.043 Sum_probs=170.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hcc---C
Q 010807 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG--MIKEMESVLSRMKSNQCKPDIITFNLLIDSY----GKR---Q 304 (500)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---~ 304 (500)
...++|+++++.++...+. +...|+.--..+...| +++++++.++.+.....+ +...|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 3446888888888876544 5666777777777777 899999999988876544 444454433333 333 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------H
Q 010807 305 AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN------V 376 (500)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~ 376 (500)
++++++++++.+.+..++ +..+|+.-.-.+.+.|.++ ++.+.++.+.+.. +-|...|+.-...+.+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 889999999999887544 8888888888888888888 9999999998865 4577788777777777776 8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 377 SRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE-ADLLFENSHNMG--VTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
+++++.++.++...+ -|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++..|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999998764 489999999999999888544 556777766532 1347788999999999999999999999
Q ss_pred HHHHHC
Q 010807 454 KRMEQN 459 (500)
Q Consensus 454 ~~m~~~ 459 (500)
+.+.+.
T Consensus 282 ~~l~~~ 287 (306)
T 3dra_A 282 DLLKSK 287 (306)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-07 Score=81.29 Aligned_cols=230 Identities=10% Similarity=-0.041 Sum_probs=158.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 229 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308 (500)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 308 (500)
-..-.|++..++.-. .+............+.++|...|+++.. ..-.|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344578888877733 3222222333444455777777776532 12234444555444443 322
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPSFITYECIITMYGYCDNVSRAREIFDELS 387 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~ 387 (500)
|+..|++....+ .++..++..+..++...|++++|..++...+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788888887765 45666677888999999999999999999877653 2357788899999999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--HHhcC--ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 388 KLGKDM-----KVSTLNAMLEA--YCMNG--LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 388 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+.. | +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 853 4 24555566655 33334 899999999999776 56644445555689999999999999997765
Q ss_pred C-----CC----CCCHHHHHHHHHHHhcCCC
Q 010807 459 N-----GI----VPNKRFFLEALETFSSSLA 480 (500)
Q Consensus 459 ~-----g~----~p~~~~~~~ll~~~~~~g~ 480 (500)
. .. +-+..++..++......|.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 3 11 3355666577666666665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-07 Score=81.24 Aligned_cols=176 Identities=7% Similarity=-0.034 Sum_probs=111.9
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC----CHHHHHHH
Q 010807 202 KALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG----MIKEMESV 277 (500)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~ 277 (500)
+|+++|++..+ .-+...+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|++.
T Consensus 4 eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45566666665 3466777777777777777777777777777654 55666666666666 5 67777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 010807 278 LSRMKSNQCKPDIITFNLLIDSYGK----RQAFDKMEQVFKSLMHSKEK-PTLPTFNSMIINYGK----ARLQGKAEYVF 348 (500)
Q Consensus 278 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~ 348 (500)
|++..+.| +...+..|...|.. .+++++|++.|++..+.+.. .....+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77776654 45566666666665 66777777777777665431 015566666666666 56667777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcc------CCHHHHHHHHHHHHHCC
Q 010807 349 QKMTAMKYTPSFITYECIITMYGYC------DNVSRAREIFDELSKLG 390 (500)
Q Consensus 349 ~~m~~~~~~~~~~~~~~li~~~~~~------~~~~~A~~~~~~~~~~~ 390 (500)
++..+. ..+...+..|..+|... .+.++|...|+...+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666654 12333455555555432 26666666666666655
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.4e-09 Score=106.33 Aligned_cols=173 Identities=6% Similarity=-0.076 Sum_probs=143.7
Q ss_pred hhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 266 GKNGMIKEMESVLSRMK--------SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999988 432 336677888899999999999999999999886433 78899999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 010807 338 ARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
.|++++|...|++..+.. +-+...+..+..+|...|++++ .+.|++..+.+. -+...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998864 3457888999999999999999 999999998764 3688999999999999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHHcCC
Q 010807 418 FENSHNMGVTPD-SSTYKLLYKAYTKANM 445 (500)
Q Consensus 418 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 445 (500)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998876 454 5677777777766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=9e-09 Score=83.72 Aligned_cols=146 Identities=12% Similarity=0.053 Sum_probs=99.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
|...+...|++++|+..++....... .+...+..+...|.+.|++++|...|++..+.. +-+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 44556667788888888877754311 134456667778888888888888888887754 3457788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLL-FENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+++|...|++..+..+ -+..+|..+...|.+.|++++|.+. +++..+.. +-+...|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8888888888887653 2577888888888888888776654 46666643 2355666666556655553
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-08 Score=104.23 Aligned_cols=174 Identities=7% Similarity=-0.077 Sum_probs=145.3
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 231 AQARNVDQVNALFKELH--------ESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 231 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
...|++++|++.+++.. +.. +.+...+..+...+.+.|++++|++.|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999998 432 236678888999999999999999999999886443 77889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREI 382 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 382 (500)
.|++++|++.|++..+..+. +...|..+..+|.+.|++++ ...|++..+.. +-+...|..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999886443 67889999999999999999 99999998864 44678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 383 FDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
|+++.+.+. -+...+..+..++...++
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 999988652 246778888888766555
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-08 Score=83.39 Aligned_cols=156 Identities=7% Similarity=0.007 Sum_probs=72.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIIN-YGKARL 340 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~ 340 (500)
...+.+.|++++|...|++..+.... +...+..+..++...|++++|+..|++.....+ +...+..+... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhcc
Confidence 33444555555555555544433211 344455555555555555555555555443322 22222211111 111112
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhhHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 419 (500)
..+|...++...+.. +-+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 223445555544432 2234555555555555555555555555555543322 23455555555555555555555555
Q ss_pred HH
Q 010807 420 NS 421 (500)
Q Consensus 420 ~m 421 (500)
+.
T Consensus 169 ~a 170 (176)
T 2r5s_A 169 RQ 170 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.1e-08 Score=96.74 Aligned_cols=154 Identities=7% Similarity=-0.099 Sum_probs=116.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYV 347 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 347 (500)
.|++++|++.+++..+.... +...+..+...|...|++++|++.|++..+... .+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988776433 678888999999999999999999999988643 3688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 010807 348 FQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN---GLPTEADLLFENSHNM 424 (500)
Q Consensus 348 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 424 (500)
+++..+.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988864 44678889999999999999999999999988653 3678888999999999 9999999999998876
Q ss_pred C
Q 010807 425 G 425 (500)
Q Consensus 425 ~ 425 (500)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-08 Score=87.55 Aligned_cols=163 Identities=8% Similarity=-0.096 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPT-FNSMIIN 334 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~ 334 (500)
..+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|+..++++.... |+... .......
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHH
Confidence 44444555555666666666666666554322 45556666666666666666666666655432 23222 2222223
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhh
Q 010807 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM-KVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 413 (500)
+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+..... +...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 445556666666666666543 3456666667777777777777777777776654321 25566777777777777777
Q ss_pred HHHHHHHHH
Q 010807 414 ADLLFENSH 422 (500)
Q Consensus 414 A~~~~~~m~ 422 (500)
|...|++..
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-08 Score=97.42 Aligned_cols=156 Identities=7% Similarity=-0.098 Sum_probs=121.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010807 233 ARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV 312 (500)
Q Consensus 233 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 312 (500)
.|++++|++.|++..+.... +...+..+...+.+.|++++|.+.+++..+.... +...+..+..+|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999998876443 6788999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHC
Q 010807 313 FKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC---DNVSRAREIFDELSKL 389 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~~~~~ 389 (500)
|++..+... .+...+..+..+|...|++++|...+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999988643 368899999999999999999999999998864 44678899999999999 9999999999999887
Q ss_pred CCC
Q 010807 390 GKD 392 (500)
Q Consensus 390 ~~~ 392 (500)
+..
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-08 Score=79.83 Aligned_cols=140 Identities=6% Similarity=-0.104 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
..|++++|+..+++..... +.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHH
Confidence 6788888888888876421 223445667888888888888888888888776544 6777888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQV-FKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
..|++..+.... +...+..+...|.+.|++++|.+. +++..+..+ -+..+|......+...|+
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 888887776433 567777777788888877665554 466665432 256666666666655553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-07 Score=80.28 Aligned_cols=201 Identities=16% Similarity=0.084 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILA-P-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDI-ITFNL 295 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~-~~~~~ 295 (500)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445555666677777777777777777664322 1 1345666677777777777777777777665322 111 12333
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS-FITYECIITMYGYCD 374 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~~ 374 (500)
+..++...+.. .+ ..|..+...+...|++++|...|+.+.+.. |+ ...+......
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----- 139 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH-----
Confidence 33333322110 00 011112222334556666666666666542 22 1111111000
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD----SSTYKLLYKAYTKANMKELVQ 450 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~ 450 (500)
..+...+ ......+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.
T Consensus 140 -----~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 140 -----VFLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 0000000 011123456677777777777777777664 232 245666777777777777777
Q ss_pred HHHHHHHHC
Q 010807 451 KLLKRMEQN 459 (500)
Q Consensus 451 ~~~~~m~~~ 459 (500)
+.++.+...
T Consensus 205 ~~~~~l~~~ 213 (225)
T 2yhc_A 205 KVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 777776655
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.4e-08 Score=82.05 Aligned_cols=162 Identities=16% Similarity=0.079 Sum_probs=105.9
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
....-..+.+.|++++|+..|+...+.. +.+...+..+..++...|++++|+..|+..... .|+...+..+.....
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 3444455566788888888888877653 556788888888888899999999888887664 234433322211111
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAP-DIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 270 (500)
. ..+...+|+..|++..... +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+
T Consensus 85 ~---~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 85 H---QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp H---HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred H---hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 0 1122233566676666432 3456777777777888888888888887777665432 34566777777777777
Q ss_pred HHHHHHHHHHHH
Q 010807 271 IKEMESVLSRMK 282 (500)
Q Consensus 271 ~~~a~~~~~~m~ 282 (500)
.++|...|++..
T Consensus 160 ~~~A~~~y~~al 171 (176)
T 2r5s_A 160 GNAIASKYRRQL 171 (176)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-07 Score=85.09 Aligned_cols=184 Identities=9% Similarity=-0.030 Sum_probs=100.1
Q ss_pred HHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 010807 264 AYGKNGMIKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEKP-TLPTFNSMII 333 (500)
Q Consensus 264 ~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~ 333 (500)
.|...|++++|...|.+..+. +-.. -..+|+.+..+|.+.|++++|+..|++..+. |-.. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555544321 1000 1234555566666666666666666654332 1110 1245566666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTP-----SFITYECIITMYGYCDNVSRAREIFDELSKL----GKDMK-VSTLNAMLE 403 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~ 403 (500)
.|.. |++++|...|++..+..... ...++..+...|...|++++|+..|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6666 77777776666655421000 1345667777777777777777777776652 11111 235666666
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPD------SSTYKLLYKAYTKANMKELVQKL 452 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~ 452 (500)
++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7777788888888888776 3 221 12344455555 56666665553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-07 Score=79.53 Aligned_cols=207 Identities=11% Similarity=-0.026 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--
Q 010807 179 DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESILAPDI-- 255 (500)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~-- 255 (500)
+...+..+...+. ..|++++|+..|+++.....-.+. ...+..+..++.+.|++++|+..|+++.+.......
T Consensus 3 ~~~~~~~~a~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKL----QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp CHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHH
Confidence 4556666777777 888999999999999863211222 457888999999999999999999999876543221
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 256 YTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 256 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
..+..+..++.+.|.. .+ ..|..+...+...|++++|+..|+++++..+. +...+......
T Consensus 79 ~a~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l- 139 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL- 139 (225)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH-
Confidence 2344444444433211 11 11233444556678889999999988876432 22222211110
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhh
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 413 (500)
..+...+. .....+...|.+.|++++|...|+.+.+..+.. ....+..+..+|.+.|++++
T Consensus 140 ---------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 ---------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ---------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 00001100 112345667788888888888888888754321 12567778888888888888
Q ss_pred HHHHHHHHHhCC
Q 010807 414 ADLLFENSHNMG 425 (500)
Q Consensus 414 A~~~~~~m~~~~ 425 (500)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 888888877763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-07 Score=87.76 Aligned_cols=218 Identities=11% Similarity=0.056 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHHhhcC-----CCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-C----HHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGM-----ERCKPN----IVTYNILLRACAQARNVDQVNALFKELHESILAP-D----IYTYNGV 261 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~-----~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~----~~~~~~l 261 (500)
..|++++|.+++++.... .+..++ ...|+.....|...|++++|...|.+..+..... + ..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 578999999999876531 111344 2368888888999999999999999876532111 1 3578888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHH
Q 010807 262 MDAYGKNGMIKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKP-----TLPTFNSM 331 (500)
Q Consensus 262 l~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 331 (500)
...|.+.|++++|+..|++..+. |-.. -..++..+..+|.. |++++|+..|++..+..... ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 89999999999999999987643 2111 14577888889988 99999999999876532111 14678889
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-C---HHHHHHHH
Q 010807 332 IINYGKARLQGKAEYVFQKMTAM----KYTPS-FITYECIITMYGYCDNVSRAREIFDELSKLGKDM-K---VSTLNAML 402 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~-~---~~~~~~li 402 (500)
...|...|++++|...|++.... +..+. ...+..++.++...|++++|...|++.. ..... + ......++
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHH
Confidence 99999999999999999988763 21111 2356677778888899999999999988 43221 1 12344455
Q ss_pred HHHHhcCChhhHHH
Q 010807 403 EAYCMNGLPTEADL 416 (500)
Q Consensus 403 ~~~~~~g~~~~A~~ 416 (500)
.++ ..|+.+.+..
T Consensus 241 ~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAY-DEQDEEQLLR 253 (307)
T ss_dssp HHH-HTTCHHHHHH
T ss_pred HHH-HhcCHHHHHH
Confidence 554 5666655554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-06 Score=77.80 Aligned_cols=232 Identities=9% Similarity=0.024 Sum_probs=114.0
Q ss_pred HHHHHcccCCH-HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 010807 115 LFEELGKSDKW-LQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG--QTRLAMWLFSEMRNSGCRPDPSVYNALITAHL 191 (500)
Q Consensus 115 l~~~l~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 191 (500)
.+..+.+.+.+ ++|++.++.+.... +.+..+|+.--.++...| ++++++++++.+.... +-+...|+.--..+.
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~ 114 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIG 114 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHH
Confidence 34443344433 56777777777653 445666777777777777 7777777777776642 123334443322221
Q ss_pred cCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010807 192 HTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQA---RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKN 268 (500)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 268 (500)
+. + ... +++++++.+++.+.+...+ |..+|+.-.-.+.+.
T Consensus 115 ~~-------------~-----------------------~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l 157 (306)
T 3dra_A 115 QI-------------M-----------------------ELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTF 157 (306)
T ss_dssp HH-------------H-----------------------HHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HH-------------H-----------------------HhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 00 0 111 3445555555555544333 445555444444444
Q ss_pred CCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 269 GMIK--EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA------FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 269 g~~~--~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
|.++ ++++.++++.+.... |...|+.-.....+.+. ++++++.+++++...+. |...|+.+...+.+.|+
T Consensus 158 ~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 158 DLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp TCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred cccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 5444 555555555554333 44444444333334333 55555555555554332 55555555555555444
Q ss_pred HhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 341 QGK-AEYVFQKMTAMK--YTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 341 ~~~-a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
... +..+...+...+ -..+...+..+..+|.+.|+.++|.++++.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 236 SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 222 223333332211 122344555555555555555555555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.9e-06 Score=78.57 Aligned_cols=162 Identities=9% Similarity=-0.034 Sum_probs=98.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 010807 261 VMDAYGKNGMIKEMESVLSRMKSNQC-KPDI----ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNS 330 (500)
Q Consensus 261 ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 330 (500)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..|++....... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567777888888888877766422 1221 13334666667777888888888777763221 12 235777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 010807 331 MIINYGKARLQGKAEYVFQKMTA----M-KYTPS-FITYECIITMYGYCDNVSRAREIFDELSK----LGKDMK-VSTLN 399 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~----~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~-~~~~~ 399 (500)
+..+|...|++++|...++++.+ . +..+. ..++..+...|.+.|++++|...+++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777777663 1 11111 23566677777777777777777766554 111111 45666
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHH
Q 010807 400 AMLEAYCMNGL-PTEADLLFENSH 422 (500)
Q Consensus 400 ~li~~~~~~g~-~~~A~~~~~~m~ 422 (500)
.+..+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66777777773 467766666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-06 Score=79.64 Aligned_cols=165 Identities=10% Similarity=0.071 Sum_probs=126.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CC----HHHH
Q 010807 294 NLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PTL----PTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PS----FITY 363 (500)
Q Consensus 294 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 363 (500)
...+..+...|++++|.+++++..+.... ++. ..+..+...+...+++++|...++........ ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 33467788999999999999998875322 221 13345667777788999999999999884322 22 3468
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HHH
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSK----L-GKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNM----GVTPD-SST 432 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~ 432 (500)
+.+...|...|++++|...|+++.+ . +..+ ...++..+...|.+.|++++|+..+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999998874 1 1111 2347889999999999999999999987642 22233 678
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 010807 433 YKLLYKAYTKAN-MKELVQKLLKRMEQ 458 (500)
Q Consensus 433 ~~~li~~~~~~g-~~~~a~~~~~~m~~ 458 (500)
|..+..++.+.| ++++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999999 57999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=85.25 Aligned_cols=165 Identities=7% Similarity=-0.094 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFN-LLI 297 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li 297 (500)
+...+..+...+...|++++|...|++....... +...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 3445555666666677777777777766665433 55666666667777777777777776665542 3332222 222
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhccCCH
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYT-PSFITYECIITMYGYCDNV 376 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~ 376 (500)
..+...++.+.|+..+++.....+ .+...+..+...+...|++++|...|..+.+.... .+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 234455666666666666666433 25666667777777777777777777776664311 1145666677777777777
Q ss_pred HHHHHHHHHHH
Q 010807 377 SRAREIFDELS 387 (500)
Q Consensus 377 ~~A~~~~~~~~ 387 (500)
++|...|++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77766666543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-05 Score=72.76 Aligned_cols=223 Identities=8% Similarity=-0.006 Sum_probs=159.6
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-C-CHHH
Q 010807 232 QARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR-Q-AFDK 308 (500)
Q Consensus 232 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~-~~~~ 308 (500)
+.+..++|+++++.++..... +..+|+.--..+...| .+++++++++.+.....+ +...|+.-..++.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 344556788888888876554 5666777666777777 588888888888887655 666776655555554 5 7788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-----
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG--------KAEYVFQKMTAMKYTPSFITYECIITMYGYCDN----- 375 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----- 375 (500)
++++++.+.+...+ +..+|+--.-.+.+.|.++ ++.+.++++.+.. +-|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 88888888876444 7777777666666655555 8888888888865 4578888888888877776
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--------------------hhHHHHHHHHHhCC-----CCC
Q 010807 376 --VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP--------------------TEADLLFENSHNMG-----VTP 428 (500)
Q Consensus 376 --~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~p 428 (500)
++++++.++++....+ -|...|+.+-..+.+.|+. ....++..++...+ -.+
T Consensus 222 ~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 7889999988888754 4788998888888777764 22333333333321 135
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 429 DSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
....+..|+..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7888899999999999999999999998654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-06 Score=75.64 Aligned_cols=128 Identities=11% Similarity=0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYG 371 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 371 (500)
.+..+...+...|++++|+..|++. +.++...|..+..+|...|++++|...++...+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3445556666777777777777665 34466677777777777777777777777766643 335666677777777
Q ss_pred ccCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 372 YCDNVSRAREIFDELSKLGKDM---------------KVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|++++|...|+...+..... ....+..+..+|...|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777766643221 1255666666667777777777777766654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.2e-06 Score=77.02 Aligned_cols=166 Identities=10% Similarity=0.039 Sum_probs=105.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC---CCC--HH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTL-----PTFNSMIINYGKARLQGKAEYVFQKMTAMKY---TPS--FI 361 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~ 361 (500)
.+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666777777777777766654322111 2233455556667778888877777765321 111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCC-CH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSK---LGK-DM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM----GVTP-DS 430 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~ 430 (500)
+++.+...|...|++++|...|++..+ ... .+ ...++..+..+|...|++++|+..+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677778888888888888888877662 111 11 1257777888888888888888888876542 1111 15
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 010807 431 STYKLLYKAYTKANMKELV-QKLLKRME 457 (500)
Q Consensus 431 ~~~~~li~~~~~~g~~~~a-~~~~~~m~ 457 (500)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6777788888888888888 66676654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-06 Score=75.16 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=59.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQG 342 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 342 (500)
..+...|++++|.+.|++.. .|+...+..+..+|...|++++|++.|++..... +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 33444444444444444331 2344444444444444455555555444444432 123444444555555555555
Q ss_pred HHHHHHHHHHhCCC--------------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 343 KAEYVFQKMTAMKY--------------TP-SFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 343 ~a~~~~~~m~~~~~--------------~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
+|...|+...+... .| ....+..+..+|...|++++|.+.|+...+..
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 55555555444221 01 12455556666666666666666666666543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.67 E-value=8.9e-06 Score=79.74 Aligned_cols=317 Identities=9% Similarity=-0.011 Sum_probs=197.2
Q ss_pred CCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHcCcchHHH
Q 010807 123 DKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQ-TRLAMWLFSEMRNS-GCRP-DPSVYNALITAHLHTRDKAKA 199 (500)
Q Consensus 123 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~~~~~~~ 199 (500)
+.++.+..+|+..... .|++..|...+....+.+. .+....+|+..... |..| +...|...+..+.......++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 8899999999999884 4699999999999888874 45678889988764 5444 678888887766543335788
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHc-------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRACAQA-------------RNVDQVNALFKELHESILAPDIYTYNGVMDAYG 266 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 266 (500)
++.+..+|++..... ...-...|......-... +.+..|..+++++...-...+...|...+..-.
T Consensus 105 ~~~vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 105 IEKIRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 999999999998621 111122344333221111 122334444544432100113345555554432
Q ss_pred hcC--C-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010807 267 KNG--M-----IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR 339 (500)
Q Consensus 267 ~~g--~-----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 339 (500)
..+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..+|++.... +.+...|. .|....
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~ 256 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVM 256 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHT
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhc
Confidence 221 1 345778899888753 336778888888888999999999999999987 32333332 232221
Q ss_pred CHhHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 340 LQGKAEYVFQKMTAMK---------YTP---SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~---------~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
..++. ++.+.+.- ..+ ....|...+....+.++++.|..+|+.. .. ...+..+|-.....-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH
Confidence 11222 22222110 001 1245666777777788999999999999 32 22345555433322222
Q ss_pred -cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 408 -NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 408 -~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
.++.+.|..+|+...+.. +-+...+...++...+.|+.+.|..+|++.
T Consensus 332 ~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 336999999999988753 223555666777778899999998888775
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.1e-06 Score=76.34 Aligned_cols=167 Identities=7% Similarity=-0.066 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC---CCC--HH
Q 010807 257 TYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD-----IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKE---KPT--LP 326 (500)
Q Consensus 257 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 326 (500)
.+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444566677888888888888887776532211 12234466667888899999999998875322 112 45
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCC-CH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAM-KYTPS-----FITYECIITMYGYCDNVSRAREIFDELSKLG----KDM-KV 395 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~----~~~-~~ 395 (500)
+|+.+...|...|++++|...+++..+. ...++ ..++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8889999999999999999999988731 01122 2588899999999999999999999876521 111 26
Q ss_pred HHHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 010807 396 STLNAMLEAYCMNGLPTEA-DLLFENSHN 423 (500)
Q Consensus 396 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 423 (500)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 777877653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-06 Score=71.22 Aligned_cols=129 Identities=12% Similarity=-0.029 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...++...+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666677777777777777766643 3356667777777777777777777777777654 23567777777778
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHH
Q 010807 406 CMNGLPTEADLLFENSHNMGVTPDSSTYKLLYK--AYTKANMKELVQKLLKRME 457 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~ 457 (500)
...|++++|...|++..... +.+...+..+.. .+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888777653 224444433333 3667788888887776654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-06 Score=68.00 Aligned_cols=92 Identities=12% Similarity=-0.021 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
.....|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.+. .+...|..+..+|...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHCC
Confidence 33344444444444444444433322 22333444444444444444444444444443321 13344444444444444
Q ss_pred ChhhHHHHHHHHHh
Q 010807 410 LPTEADLLFENSHN 423 (500)
Q Consensus 410 ~~~~A~~~~~~m~~ 423 (500)
++++|++.|++.++
T Consensus 96 ~~~~A~~~~~~al~ 109 (126)
T 4gco_A 96 EWSKAQRAYEDALQ 109 (126)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.6e-07 Score=77.38 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=85.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHhccCCH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA----MKYT-PSFITYECIITMYGYCDNV 376 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~~~~ 376 (500)
..|++++|.++++.+... ......++..+...+...|++++|...+++..+ .+.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555665543333221 222345555566666666666666666655544 1111 1234556666666777777
Q ss_pred HHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC
Q 010807 377 SRAREIFDELSKL----GKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD----SSTYKLLYKAYTKANM 445 (500)
Q Consensus 377 ~~A~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~ 445 (500)
++|.+.+++..+. +-. .....+..+...+...|++++|...+++.....- ..+ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777776665542 101 1134566667777777777777777776553200 111 2335666667777788
Q ss_pred HHHHHHHHHHHHHC
Q 010807 446 KELVQKLLKRMEQN 459 (500)
Q Consensus 446 ~~~a~~~~~~m~~~ 459 (500)
+++|...+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777766643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-06 Score=70.74 Aligned_cols=129 Identities=8% Similarity=-0.009 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 291 ITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMY 370 (500)
Q Consensus 291 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 370 (500)
..+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...++...+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3455666667777777777777777666432 256677777777777777777777777776653 34566777777777
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcCChhhHHHHHHHHH
Q 010807 371 GYCDNVSRAREIFDELSKLGKDMKVSTLNAML--EAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~ 422 (500)
...|++++|...|++..+... .+...+..+. ..+...|++++|+..+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888887776543 2444553333 33667778888877776643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=67.55 Aligned_cols=97 Identities=6% Similarity=-0.055 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
..+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 34555566666666666666666666554332 4555666666666666666666666665554322 455555566666
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 010807 301 GKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~ 319 (500)
...|++++|++.|++.++.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666655553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-06 Score=65.11 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...++++.... +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444445555555555554444432 2234444445555555555555555555544432 12344455555555
Q ss_pred HhcCChhhHHHHHHHHHh
Q 010807 406 CMNGLPTEADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~ 423 (500)
...|++++|...++++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.2e-07 Score=76.57 Aligned_cols=155 Identities=10% Similarity=0.017 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHh
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS----KEK-PTLPTFNSMIINYGKARLQG 342 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~ 342 (500)
.|++++|.++++.+... .......+..+...|...|++++|...+++..+. +.. ....++..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555533333221 1123444555555555555655555555554431 111 12344555566666666666
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCh
Q 010807 343 KAEYVFQKMTAM----KYTP--SFITYECIITMYGYCDNVSRAREIFDELSK----LGKD-MKVSTLNAMLEAYCMNGLP 411 (500)
Q Consensus 343 ~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~ 411 (500)
+|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ .+.. .-..++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666555432 1011 133456666667777777777777766553 1110 0123356667777777888
Q ss_pred hhHHHHHHHHHh
Q 010807 412 TEADLLFENSHN 423 (500)
Q Consensus 412 ~~A~~~~~~m~~ 423 (500)
++|...+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-05 Score=70.75 Aligned_cols=138 Identities=9% Similarity=0.001 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchH-H-
Q 010807 122 SDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKG-QTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKA-K- 198 (500)
Q Consensus 122 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~-~- 198 (500)
.+..++|+++++.+.... +-+..+|+.--.++...| .+++++.+++.+.... +-+...|+.--..+. .. +
T Consensus 67 ~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~----~l~~~ 139 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD----RISPQ 139 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH----HHCCS
T ss_pred CCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----HhcCC
Confidence 344567888888888764 556677888777777777 4888888888887653 235556666555444 22 2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVD--------QVNALFKELHESILAPDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 269 (500)
++++++++++++.... +.|...|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 140 ~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred ChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 4567777777776533 556666665555554444444 555555555554333 4445554444444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=6.6e-07 Score=81.08 Aligned_cols=195 Identities=8% Similarity=-0.040 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4567777888888888888888888888776433 6777888888888888888888888888776433 6777888888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 378 (500)
+|...|++++|+..|++..+..+. +...+...+....+ ..++.. +..........+......+...+ .|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 888888888888888877653211 00011111111111 111111 12222333344444444443322 577888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHh
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMN-GLPTEADLLFENSHN 423 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 423 (500)
|.+.++...+... .+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888877776532 2333444444444444 567788888877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.6e-06 Score=67.96 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
...+..+...+.+.|++++|...|+...... +-+...|..+..+|...|++++|+..|++..+..+ -++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 3455555666666666666666666666543 33455666666666666666666666666666542 245566666666
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 010807 405 YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...|++++|+..|++..+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.6e-06 Score=65.06 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...|..+...+...|++++|.+.|+++.+... .+..++..+...+.+.|++++|..+++++.+... .+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 45566666667777777777777777665432 2455666666666666666666666666655432 245556666666
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINY 335 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 335 (500)
|...|++++|...|+++.+..+ .+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 6666666666666666655422 2344444444333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=8.2e-07 Score=80.46 Aligned_cols=194 Identities=6% Similarity=-0.037 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 333 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 333 (500)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+... .+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 5567788888999999999999999999886433 788899999999999999999999999988643 37888999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTPSF-ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
+|...|++++|...|+...+.. |+. ..+...+....+ ..++.. +........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999887642 110 011111111111 111111 2223333344455555544333 368899
Q ss_pred hHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 010807 413 EADLLFENSHNMGVTPDSSTY-KLLYKAYTKA-NMKELVQKLLKRMEQN 459 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~-g~~~~a~~~~~~m~~~ 459 (500)
+|++.+++..+. .|+.... ..+...+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999888765 5554433 3333334444 6788899999877653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-06 Score=66.40 Aligned_cols=117 Identities=8% Similarity=-0.093 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 34455555555666666666666666555542 22455555566666666666666666666555432 24555666666
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010807 404 AYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 443 (500)
+|...|++++|...|++..+.. +.+...+..+...+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 6666666666666666655432 11233444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.5e-06 Score=65.10 Aligned_cols=94 Identities=9% Similarity=0.027 Sum_probs=39.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
+..+...+...|++++|+..|++...... .+...+..+...+...|++++|...++...... +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 33344444444444444444444433211 133344444444444444444444444444321 1223344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010807 373 CDNVSRAREIFDELSK 388 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~ 388 (500)
.|++++|...|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-06 Score=66.37 Aligned_cols=118 Identities=9% Similarity=-0.024 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLL 296 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 296 (500)
+.+...|..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 344566777777777777777777777777665332 5666666666777777777777777766654322 45566666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 297 IDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 297 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
..+|.+.|++++|++.|++..+.... +...+..+..++..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 66666777777777777666554221 33444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=3.8e-06 Score=65.50 Aligned_cols=119 Identities=10% Similarity=-0.033 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...+..+...+...|++++|...|++....... +...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 3445666667777777777777777776654322 5566666666677777777777777766654322 4556666666
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL 340 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 340 (500)
+|...|++++|...|++..+... .+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 66677777777777766665432 245555555555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-06 Score=67.67 Aligned_cols=103 Identities=10% Similarity=0.048 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
...+..+...+.+.|++++|...|+++.+..+ -+...|..+..+|...|++++|+..|++..... +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 55778888999999999999999999999763 478999999999999999999999999998864 3467889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 010807 440 YTKANMKELVQKLLKRMEQNGIVPNKR 466 (500)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 466 (500)
|.+.|++++|...|++..+.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 999999999999999999764 5554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.6e-07 Score=73.72 Aligned_cols=120 Identities=11% Similarity=0.132 Sum_probs=64.7
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhccCCH--HH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITM-YGYCDNV--SR 378 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~--~~ 378 (500)
..|++++|+..+++...... .+...|..+...|...|++++|...|+...+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34555566666655554322 245555666666666666666666666655532 2244455555555 5555665 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 379 AREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...++.+.+... .+...+..+..+|...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666655432 24555556666666666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.9e-06 Score=77.43 Aligned_cols=138 Identities=11% Similarity=-0.071 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
+...+..+...|.+.|++++|+..|++.++........ ..+.+..+- +.....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~--------~~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQ--------ALRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHH--------HHHHHHHHHHHH
Confidence 45566777777777778888877777776643322100 000000000 000234444555
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554432 244455555555555555555555555554432 2234445555555555555554
Q ss_pred H
Q 010807 449 V 449 (500)
Q Consensus 449 a 449 (500)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.2e-06 Score=78.72 Aligned_cols=145 Identities=10% Similarity=-0.056 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 254 DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII 333 (500)
Q Consensus 254 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 333 (500)
+...+..+...|.+.|++++|+..|++..+....... . ..+.+.++- . .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~------------~-~~~~~~~~~-~-------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS------------F-SNEEAQKAQ-A-------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC------------C-CSHHHHHHH-H-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc------------C-ChHHHHHHH-H-------HHHHHHHHHHH
Confidence 5678888999999999999999999998876433110 0 001111100 0 01234555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+..++...|++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555542 23455566666666666666666666666665432 245566666666666666666
Q ss_pred H-HHHHHHH
Q 010807 414 A-DLLFENS 421 (500)
Q Consensus 414 A-~~~~~~m 421 (500)
| ..+|..|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5 3344444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-06 Score=77.05 Aligned_cols=187 Identities=8% Similarity=-0.077 Sum_probs=112.6
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------------
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKL-------IAVMGKKGQTRLAMWLFSEMRNSGCRPDP------------- 180 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~------------- 180 (500)
..++...|++.|..+.+.. +.....|..+ ..++.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 3589999999999999874 5567788888 5666666666666665555443 23321
Q ss_pred ---------HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010807 181 ---------SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 251 (500)
Q Consensus 181 ---------~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 251 (500)
..+-.+...+. ..|++++|.++|+.+... .|+......+...+.+.+++++|+..|+......
T Consensus 94 ~~~~v~~r~dl~LayA~~L~----~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~- 165 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEA----AQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP- 165 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHH----HHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-
T ss_pred cccccCCHhHHHHHHHHHHH----HCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-
Confidence 11222333344 667777777777777642 3433355555567777777777777776443321
Q ss_pred CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010807 252 APD--IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 252 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
.|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 110 23455666667777777777777776654322132 223444555666667777777777766654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-06 Score=69.11 Aligned_cols=122 Identities=7% Similarity=0.058 Sum_probs=101.5
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--h
Q 010807 336 GKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLP--T 412 (500)
Q Consensus 336 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~ 412 (500)
...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+... .+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45688899999999888754 45688999999999999999999999999988653 368888888888 8899998 9
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 413 EADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 413 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
+|...++++.... +.+...+..+...+...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998864 3467888999999999999999999999998763
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=69.87 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++...... .+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 334444445555555555555555544432 22344444555555555555555555555544332 1344444455555
Q ss_pred HhcCChhhHHHHHHHHHh
Q 010807 406 CMNGLPTEADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~ 423 (500)
...|++++|+..|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.43 E-value=7e-06 Score=72.92 Aligned_cols=126 Identities=8% Similarity=-0.101 Sum_probs=64.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhcc
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPS--FITYECIITMYGYC 373 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~ 373 (500)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4444555666666666666555432 222244444445566666666666665333211 010 22445555566666
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 374 DNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
|++++|+..|++.......| ..........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666555332212 2234445555556666666666666665554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00015 Score=66.22 Aligned_cols=182 Identities=7% Similarity=0.006 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHH
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ--AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARL-QGKAEYV 347 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~ 347 (500)
+++++.+++.+.....+ +..+|+.-..++.+.+ ++++++.+++.+.+..+. +...|+.-...+...|. ++++.+.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45666666666655433 5555554444444444 366666666666665333 56666666555566665 4666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 010807 348 FQKMTAMKYTPSFITYECIITMYGYC--------------DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN----- 408 (500)
Q Consensus 348 ~~~m~~~~~~~~~~~~~~li~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 408 (500)
+..+.+.. +-|...|+.....+.+. +.++++++.+.......+ -|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccc
Confidence 66666654 33555555444444333 346777888877777653 3677777665555554
Q ss_pred ------CChhhHHHHHHHHHhCCCCCCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHC
Q 010807 409 ------GLPTEADLLFENSHNMGVTPDSSTYKLLYK-----AYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 409 ------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~~ 459 (500)
+.++++++.++++.+. .||. .|..+.. +....|..+++..++.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467788888888775 4543 2322211 222356777788888887753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=6.1e-07 Score=76.54 Aligned_cols=87 Identities=13% Similarity=0.045 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 441 (500)
.+..+..+|...|++++|+..++...+.. +.+...+..+..+|...|++++|+..|++..... +-+...+..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 34444444444444444444444444432 1234444444444444444444444444444332 123334444444444
Q ss_pred HcCCHHHHH
Q 010807 442 KANMKELVQ 450 (500)
Q Consensus 442 ~~g~~~~a~ 450 (500)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=69.55 Aligned_cols=98 Identities=9% Similarity=-0.094 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
+...+..+...+...|++++|+..|+........ +...|..+..+|...|++++|+..|++....... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3445556666666677777777777666654333 5556666666666666666666666666554322 4455556666
Q ss_pred HHhccCCHHHHHHHHHHHHh
Q 010807 299 SYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~ 318 (500)
+|...|++++|++.|+..++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.5e-06 Score=63.77 Aligned_cols=95 Identities=11% Similarity=-0.109 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYT 441 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 441 (500)
.+..+...+...|++++|...|++..+... .+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 344444555555555555555555555432 245555555555555555555555555555442 223445555555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010807 442 KANMKELVQKLLKRMEQ 458 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (500)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.9e-06 Score=63.31 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=50.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCC----HHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG--VTPD----SSTYKL 435 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 435 (500)
.+..+...+.+.|++++|+..|++..+..+ -+...|+.+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344455555555555555555555555432 245555555556666666666665555554321 0111 124455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+..++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666665554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-05 Score=63.22 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK--DMK----VSTLNAM 401 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 401 (500)
+..+...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|++.+++..+... ..+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4444445555555555555555544432 22344455555555555555555555554443211 001 1245555
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHH
Q 010807 402 LEAYCMNGLPTEADLLFENSHNMGVTPDSST 432 (500)
Q Consensus 402 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 432 (500)
..++...|++++|++.|++.+.. .||..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 55666666666666666665543 344433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-05 Score=74.37 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 223 YNILLRACAQARNVDQVNALFKEL 246 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m 246 (500)
+..+...|...|++++|.+.+..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~ 81 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHS 81 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555555555555555444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-05 Score=59.14 Aligned_cols=97 Identities=9% Similarity=0.016 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
..+..+...+...|++++|...|+........ +...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34555555666666666666666665554322 4455555555555666666666666655554222 444555555555
Q ss_pred hccCCHHHHHHHHHHHHhC
Q 010807 301 GKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~ 319 (500)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5556666666666555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=3e-05 Score=58.96 Aligned_cols=94 Identities=11% Similarity=-0.050 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+... .+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 12333444444444444444444444444444321 133444444444444
Q ss_pred cCChhhHHHHHHHHHh
Q 010807 408 NGLPTEADLLFENSHN 423 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~ 423 (500)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=2e-05 Score=61.31 Aligned_cols=97 Identities=8% Similarity=-0.142 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..|..+...+...|++++|...|+...+.. +.+...|..+..+|...|++++|+..+++..+... .+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 344555555666666666666666665543 33455666666666666666666666666666542 2456666666666
Q ss_pred HhcCChhhHHHHHHHHHhC
Q 010807 406 CMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~~ 424 (500)
...|++++|+..|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6666666666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-05 Score=74.46 Aligned_cols=202 Identities=11% Similarity=-0.005 Sum_probs=138.2
Q ss_pred HHHHHHcccCCHHHHHHHHHHHHHccCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC
Q 010807 114 LLFEELGKSDKWLQCLEVFRWMQKQRWYIAD---------------TGIYSKLIAVMGKKGQTRLAMWLFSEMRNS-GCR 177 (500)
Q Consensus 114 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 177 (500)
.-.+.+.+.|++++|++.|..+.+...-..+ ..++..+...|.+.|++++|.+.+..+.+. +..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~ 88 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF 88 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3445566779999999999999876422211 134788999999999999999999987653 111
Q ss_pred CCHH---HHHHHHHHHHcCcchHHHHHHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 010807 178 PDPS---VYNALITAHLHTRDKAKALAKALGYFQKMKGM----ERCKPNIVTYNILLRACAQARNVDQVNALFKELHES- 249 (500)
Q Consensus 178 p~~~---~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~- 249 (500)
++.. .....+..+.. ..|.+++|+.+++..... .....-..++..+...|...|++++|..+++++...
T Consensus 89 ~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 89 AKSKTVKVLKTLIEKFEQ---VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp CHHHHHHHHHHHHHHHCS---CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 2222 22222333322 345577777777665421 112223567888999999999999999999987543
Q ss_pred -CC--CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 250 -IL--AP-DIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCKPD--IITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 250 -g~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
+. .+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 11 2467888899999999999999999887542 22211 34567777888889999999888876643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0022 Score=58.53 Aligned_cols=173 Identities=10% Similarity=0.061 Sum_probs=107.7
Q ss_pred cCCHH-HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCcc------hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010807 158 KGQTR-LAMWLFSEMRNSGCRPDP-SVYNALITAHLHTRD------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229 (500)
Q Consensus 158 ~g~~~-~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (500)
.|.++ +|+.+++.+... .|+. ..|+.--..+...+. ....+++++.+++.+.... +-+..+|+.-...
T Consensus 42 ~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wl 117 (331)
T 3dss_A 42 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWL 117 (331)
T ss_dssp TTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34443 567777777654 3433 334432222221000 1123678888888887532 5677788877777
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---
Q 010807 230 CAQAR--NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKR--- 303 (500)
Q Consensus 230 ~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--- 303 (500)
+.+.+ .+++++.+++.+.+.... |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 478888888888887655 77888777777777777 58888888888877555 666776555444433
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010807 304 -----------QAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK 337 (500)
Q Consensus 304 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 337 (500)
+.++++++.+...+...+. |...|+-+-..+.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGA 239 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHS
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3456677777766664333 56666544444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-05 Score=63.82 Aligned_cols=96 Identities=10% Similarity=-0.056 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|+....... .+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 344444555555666666666666555533 23455555555556666666666666665555432 2444555555556
Q ss_pred HhcCChhhHHHHHHHHHh
Q 010807 406 CMNGLPTEADLLFENSHN 423 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~ 423 (500)
...|++++|...|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666655544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-05 Score=66.60 Aligned_cols=159 Identities=10% Similarity=0.014 Sum_probs=107.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---------------HHH
Q 010807 263 DAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT---------------LPT 327 (500)
Q Consensus 263 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~ 327 (500)
......|+++++.+.++.-.... ......+..+...+...|++++|+..|++......... ...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33444555666665555322221 11455677888889999999999999999987533211 278
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
|..+..+|...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+... -+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHH
Confidence 8889999999999999999999998864 45688889999999999999999999999988653 367888888888888
Q ss_pred cCChhhHH-HHHHHHHhC
Q 010807 408 NGLPTEAD-LLFENSHNM 424 (500)
Q Consensus 408 ~g~~~~A~-~~~~~m~~~ 424 (500)
.++.+++. ..+..+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88777776 555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-05 Score=61.44 Aligned_cols=97 Identities=9% Similarity=-0.089 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
+...+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...++...+... .+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 34455555555555555555555555554432 22344555555555555555555555555554332 23445555555
Q ss_pred HHHhcCChhhHHHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~ 422 (500)
+|...|++++|+..|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-05 Score=64.44 Aligned_cols=99 Identities=10% Similarity=-0.060 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 324 TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
+...+..+...+...|++++|...|++..+.. +-+...|..+..+|...|++++|+..|++..+... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45567777778888888888888888877754 33677777888888888888888888888877653 35777888888
Q ss_pred HHHhcCChhhHHHHHHHHHhC
Q 010807 404 AYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+|...|++++|+..|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.24 E-value=9.9e-06 Score=64.71 Aligned_cols=97 Identities=14% Similarity=-0.032 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDS 299 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 299 (500)
...+..+...+.+.|++++|+..|+........ +...|..+..++.+.|++++|+..|++....... +...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 344555666666777777777777766655433 5566666666666666666666666666655332 44555566666
Q ss_pred HhccCCHHHHHHHHHHHHh
Q 010807 300 YGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~ 318 (500)
|...|++++|++.|+...+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-05 Score=64.26 Aligned_cols=100 Identities=9% Similarity=0.016 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.+...|..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 34566777777888888888888888887765433 6677777777788888888888888877766433 566777777
Q ss_pred HHHhccCCHHHHHHHHHHHHhC
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHS 319 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~ 319 (500)
.+|...|++++|++.|++.++.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777888888888888777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-05 Score=59.07 Aligned_cols=93 Identities=10% Similarity=-0.045 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 010807 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDM--KVSTLNAMLEAYC 406 (500)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~ 406 (500)
..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 333344444444444444444443322 2233444444444444444444444444444432 11 2444444444455
Q ss_pred hc-CChhhHHHHHHHHHh
Q 010807 407 MN-GLPTEADLLFENSHN 423 (500)
Q Consensus 407 ~~-g~~~~A~~~~~~m~~ 423 (500)
.. |++++|.+.+++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 55 555555555544444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-05 Score=60.45 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLI 297 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 297 (500)
.+...|..+...+...|++++|+..|+........ +...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 34556666666666666666666666666554332 4555566666666666666666666665554322 455555556
Q ss_pred HHHhccCCHHHHHHHHHHHHh
Q 010807 298 DSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~ 318 (500)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 666666666666666655543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.7e-05 Score=59.15 Aligned_cols=96 Identities=9% Similarity=-0.101 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMK----VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKL 435 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 435 (500)
...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3444444444444555555555555444432 22 3444445555555555555555555544432 223444455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
+..++...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-05 Score=61.46 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC--CCC----HHHHHHHH
Q 010807 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK--DMK----VSTLNAML 402 (500)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~~li 402 (500)
..+...+...|++++|...++...... +.+...+..+...+...|++++|...++...+... .++ ..++..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333344444444444444444443322 22333444444444444444444444444433211 011 33444444
Q ss_pred HHHHhcCChhhHHHHHHHHHh
Q 010807 403 EAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.+|...|++++|...|+++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 444444555555544444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.5e-05 Score=58.79 Aligned_cols=100 Identities=9% Similarity=-0.155 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK-PDIITFNLLID 298 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~ 298 (500)
...|..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..+.... .+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 445556666677777777777777776655332 5566666666677777777777777776665211 03556666666
Q ss_pred HHhcc-CCHHHHHHHHHHHHhCC
Q 010807 299 SYGKR-QAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 299 ~~~~~-~~~~~a~~~~~~~~~~~ 320 (500)
++.+. |++++|++.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-05 Score=61.34 Aligned_cols=97 Identities=9% Similarity=0.112 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 010807 221 VTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK--PD----IITFN 294 (500)
Q Consensus 221 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~----~~~~~ 294 (500)
..|..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++....... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34556666666677777777777666654322 4555666666666666666666666665543211 11 44555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHh
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
.+..+|...|++++|.+.|++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 566666666666666666666655
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=9.2e-05 Score=59.02 Aligned_cols=94 Identities=9% Similarity=-0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECII 367 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 367 (500)
.+..+...+...|++++|++.|++..+. .|+ ...|..+..+|...|++++|...++...+.. +.+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 3334444444444444444444444332 122 2333333334444444444444444333321 11233333333
Q ss_pred HHHhccCCHHHHHHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.++...|++++|...|++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444443333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=64.87 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 432 TYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
++..+...+...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444445555555555555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-05 Score=59.66 Aligned_cols=90 Identities=10% Similarity=-0.029 Sum_probs=43.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+...+.+.|++++|...|++..+... -+...|..+..++...|++++|+..|++..+.. +-+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 33444445555555555555544332 234445555555555555555555555544432 1234444455555555555
Q ss_pred HHHHHHHHHHHH
Q 010807 446 KELVQKLLKRME 457 (500)
Q Consensus 446 ~~~a~~~~~~m~ 457 (500)
+++|...+++..
T Consensus 101 ~~~A~~~~~~al 112 (121)
T 1hxi_A 101 ANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-05 Score=63.95 Aligned_cols=134 Identities=10% Similarity=-0.035 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC----
Q 010807 290 IITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEK-PT----LPTFNSMIINYGKARLQGKAEYVFQKMTAMKY-TPS---- 359 (500)
Q Consensus 290 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~---- 359 (500)
..++..+...|...|++++|+..+++..+.... .+ ..++..+...+...|++++|...++...+... ..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456788888999999999999999987653211 12 24788889999999999999999998765311 112
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKL----GKD-MKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
...+..+...+...|++++|.+.+++..+. +.. .....+..+...|...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456788888999999999999999987753 211 1235677888899999999999999998765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.8e-05 Score=59.32 Aligned_cols=95 Identities=7% Similarity=-0.101 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 328 FNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 328 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
+..+...+.+.|++++|...++...+.. +.+...|..+..++...|++++|+..|++..+..+ -+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3445556666677777777777666643 33566666666777777777777777777666543 246666677777777
Q ss_pred cCChhhHHHHHHHHHhC
Q 010807 408 NGLPTEADLLFENSHNM 424 (500)
Q Consensus 408 ~g~~~~A~~~~~~m~~~ 424 (500)
.|++++|+..|++.++.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.04 E-value=6.7e-05 Score=72.95 Aligned_cols=146 Identities=12% Similarity=0.001 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIIT 368 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 368 (500)
....+..+...|.+.|++++|+..|++.++....... + ..+.... .. ......|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHHH----HH----HHHHHHHHHHHH
Confidence 3445666667777777777777777766653222110 0 0000000 00 001345555566
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 010807 369 MYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 369 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 448 (500)
+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.|+.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655432 245566666666666666666666666665542 2233455555555555555554
Q ss_pred HHH-HHHHHH
Q 010807 449 VQK-LLKRME 457 (500)
Q Consensus 449 a~~-~~~~m~ 457 (500)
+.+ .+++|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 442 334443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=61.28 Aligned_cols=84 Identities=10% Similarity=-0.002 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 010807 374 DNVSRAREIFDELSKLG--KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQK 451 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 451 (500)
|++++|+..|++..+.+ -+-+...+..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44445555555544432 11123444455555555555555555555554432 2234445555555555555555555
Q ss_pred HHHHHHH
Q 010807 452 LLKRMEQ 458 (500)
Q Consensus 452 ~~~~m~~ 458 (500)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=3.6e-05 Score=75.26 Aligned_cols=120 Identities=11% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|++.+++..+.... +...+..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 33455566666666666666654322 4566666666666666666666666666655322 455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHH
Q 010807 307 DKMEQVFKSLMHSKEKPTLPTFNSMIIN--YGKARLQGKAEYVFQ 349 (500)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~ 349 (500)
++|++.|++..+.... +...+..+..+ +.+.|++++|...++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666666554222 22233333333 555566666666655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00017 Score=55.98 Aligned_cols=89 Identities=13% Similarity=0.010 Sum_probs=39.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKV---STLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD---SSTYKLLYKAYT 441 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 441 (500)
..+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+++.... +.+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHH
Confidence 3344444444444444444443211 11 234444444445555555555555444431 111 333444444455
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010807 442 KANMKELVQKLLKRMEQ 458 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (500)
..|++++|...|++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=2.6e-05 Score=76.26 Aligned_cols=121 Identities=9% Similarity=0.003 Sum_probs=86.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN 375 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 375 (500)
+...+.+.|++++|++.|++..+... .+..+|..+..+|.+.|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456677888888888888777532 257788888888888888888888888888764 3457778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhhHHHHHH
Q 010807 376 VSRAREIFDELSKLGKDMKVSTLNAMLEA--YCMNGLPTEADLLFE 419 (500)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 419 (500)
+++|.+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888775432 34455555555 778888888888887
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00047 Score=54.48 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=70.6
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhH
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEA 414 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 414 (500)
+++++|...|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 23332 5555666666666777776666654 46666666666666 5667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 010807 415 DLLFENSHNMGVTPDSSTYKLLYKAYTK----ANMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 415 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 461 (500)
+.+|++..+.| +...+..|...|.. .++.++|.++|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777766654 45566666666666 6677777777777666653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00012 Score=71.07 Aligned_cols=122 Identities=6% Similarity=-0.045 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhCC
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPD--------------IYTYNGVMDAYGKNGMIKEMESVLSRMKSNQ 285 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 285 (500)
...|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44677778888888888888888888776432211 2444444444444455555544444444432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 010807 286 CKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGK 343 (500)
Q Consensus 286 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 343 (500)
.. +...|..+..+|...|++++|+..|++.++..+. +...+..+..++...++.++
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 21 3444444444444444444444444444443211 23334444444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00029 Score=56.45 Aligned_cols=109 Identities=12% Similarity=-0.009 Sum_probs=62.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCC
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLGKDM------KV-----STLNAMLEAYCMNGLPTEADLLFENSHNM-----GVT 427 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~~~~------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 427 (500)
......+.+.|++++|+..|++..+..... +. ..|..+..++.+.|++++|+..+++.++. .+.
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444455555555555555555432210 12 26667777777777777777777766653 113
Q ss_pred CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 010807 428 PD-SSTY----KLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRFFLEAL 472 (500)
Q Consensus 428 p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll 472 (500)
|+ ...| .....++...|++++|+..|++..+ .|+.+........+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 43 4456 6677777777777777777777754 25555555444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00029 Score=54.62 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSF---ITYECIITMYGYCDNVSRAREIFDELSKLGKDMK---VSTLNAMLEA 404 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~ 404 (500)
+...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...|+.+.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 34455556666666666666555321 111 35555566666666666666666666654321 2 4555666666
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 010807 405 YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~ 424 (500)
|...|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00014 Score=68.47 Aligned_cols=90 Identities=11% Similarity=-0.043 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
...|..+..+|.+.|++++|++.+++..+... -+...|..+..+|...|++++|+..|++..+.. +-+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 45667777777777777777777777776542 356777777777777777777777777776653 2245566666666
Q ss_pred HHHcCCHHHHHH
Q 010807 440 YTKANMKELVQK 451 (500)
Q Consensus 440 ~~~~g~~~~a~~ 451 (500)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00017 Score=67.91 Aligned_cols=137 Identities=3% Similarity=-0.094 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYG 301 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 301 (500)
.|..+...+.+.|++++|+..|++..+.- +. .......+++ .+. -+.+...|..+..+|.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~----------~~~~~~~~~~-------~~~-~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDADG-------AKL-QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHHH-------GGG-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hc----------CccccChHHH-------HHH-HHHHHHHHHHHHHHHH
Confidence 45667777888888888888887776410 00 0000000000 000 0113445556666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 302 KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380 (500)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 380 (500)
+.|++++|++.+++.++... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665432 245566666666666666666666666665542 224555555555555555555554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00019 Score=58.52 Aligned_cols=63 Identities=16% Similarity=-0.002 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..|..+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|...|++....
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4556666666666666666666666666542 24566666666666666666666666666554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.5e-05 Score=58.41 Aligned_cols=84 Identities=8% Similarity=-0.060 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 304 QAFDKMEQVFKSLMHSKE--KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRARE 381 (500)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 381 (500)
|++++|+..|++.++.+. +.+...+..+..+|...|++++|...+++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444444443320 1122334444444444444444444444444432 1223344444444444444444444
Q ss_pred HHHHHHH
Q 010807 382 IFDELSK 388 (500)
Q Consensus 382 ~~~~~~~ 388 (500)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=60.00 Aligned_cols=98 Identities=9% Similarity=0.020 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 292 TFNLLIDSYGKRQAFDKMEQVFKSLMHS--------K---------EKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 292 ~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.+......+.+.|++++|+..|.+.+.. . .+.+...|..+..+|.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444555555555555555544432 0 0113456777778888888888888888887775
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 355 KYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 355 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
. +.+...|..+..+|...|++++|...|+...+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4 4457778888888888888888888888887754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00094 Score=66.50 Aligned_cols=173 Identities=6% Similarity=-0.051 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-
Q 010807 236 VDQVNALFKELHESILAPDIYTYNGVMDAYGKNGM----------IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ- 304 (500)
Q Consensus 236 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~- 304 (500)
.++|++.++++...... +...|+.--..+...|+ ++++++.++++.+...+ +..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 45667777777765544 55556655555555555 77888888887776554 6666766666666777
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc---------
Q 010807 305 -AFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR-LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYC--------- 373 (500)
Q Consensus 305 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------- 373 (500)
+++++++.++++.+..+. +..+|+.-...+.+.| .++++.+.+..+.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 668888888888776444 7777777777777777 7777888877777654 34566666665555442
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhh
Q 010807 374 -----DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTE 413 (500)
Q Consensus 374 -----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 413 (500)
+.++++++.+++.....+ -|...|+.+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 557899999998888754 378899988888888777544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.83 E-value=7e-05 Score=69.61 Aligned_cols=60 Identities=12% Similarity=-0.112 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+..|++..+
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444321 2344444444445555555555555544443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0001 Score=71.77 Aligned_cols=125 Identities=6% Similarity=-0.028 Sum_probs=80.0
Q ss_pred HHhcCCHhHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCC--CCCHHHHHH
Q 010807 335 YGKARLQGKAEYVFQKMTAM---KYTP----SFITYECIITMYGYCDNVSRAREIFDELSK-----LGK--DMKVSTLNA 400 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~~~ 400 (500)
+...|++++|..++++.++. -+.+ ...+++.|..+|...|++++|..++++..+ .|. +-...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777666542 1112 245677777777778888887777776654 222 112456777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 401 MLEAYCMNGLPTEADLLFENSHN-----MGV-TPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 401 li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|...|...|++++|..++++..+ .|- .|+ ..+...+-.++...|.+++|..++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777653 221 122 234455566777778888888888887753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=6.8e-05 Score=72.93 Aligned_cols=125 Identities=3% Similarity=-0.043 Sum_probs=91.0
Q ss_pred HHhccCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CC-CCC-HHHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHS---KEKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAM-----KY-TPS-FITYE 364 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~-~~~~~ 364 (500)
.+...|++++|+.++++.++. -..+ ...+++.|..+|...|++++|..++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678899998888776542 1111 2457888888999999999998888876542 21 122 56788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH-----CCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 365 CIITMYGYCDNVSRAREIFDELSK-----LGKD--MKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 365 ~li~~~~~~~~~~~A~~~~~~~~~-----~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.|...|...|++++|+.++++..+ .|.. ....+.+.+-.++...+.+++|..+|.++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998887764 3432 2244566777888888999999999988875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.001 Score=52.56 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=43.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 010807 332 IINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM 407 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 407 (500)
...|...+..++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| ++..+..|...|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 333333344444444444444432 33444444444444 455555555555555544 34455555555555
Q ss_pred ----cCChhhHHHHHHHHHhCC
Q 010807 408 ----NGLPTEADLLFENSHNMG 425 (500)
Q Consensus 408 ----~g~~~~A~~~~~~m~~~~ 425 (500)
.+++++|..+|++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 455555555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0012 Score=65.67 Aligned_cols=170 Identities=8% Similarity=-0.029 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 010807 271 IKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA----------FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKAR- 339 (500)
Q Consensus 271 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 339 (500)
-++|++.++++...... +...|+.--.++.+.++ ++++++.++.+.+..++ +..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 35667777777765433 44555544444444444 66777777777665443 6666666666666666
Q ss_pred -CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------
Q 010807 340 -LQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD-NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN--------- 408 (500)
Q Consensus 340 -~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------- 408 (500)
+++++.+.++.+.+.. +-+...|+.-..++.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 5567777777766654 335666666666666666 666666666666665433 566666666555542
Q ss_pred -----CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 409 -----GLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 409 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+.++++++.+++++... +-|...|..+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455666665555442 2244455554444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.75 E-value=8.6e-05 Score=69.01 Aligned_cols=132 Identities=8% Similarity=-0.078 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCCHhHHHHHHHH
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLP------------------TFNSMIINYGKARLQGKAEYVFQK 350 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~ 350 (500)
....+..+...+.+.|++++|+..|++.+.. .|+.. .|..+..+|.+.|++++|...++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667888889999999999999999998774 34433 788889999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHhC
Q 010807 351 MTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA-YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 351 m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 424 (500)
.++.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++..+|.+|...
T Consensus 256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88864 446888999999999999999999999998875422 45555555555 33445667778888877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00068 Score=54.26 Aligned_cols=62 Identities=13% Similarity=-0.019 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAP------DI-----YTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p------~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.+......+.+.|++++|+..|+..++..... +. ..|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566677777777777777766543221 11 1444444445555555555554444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=9.8e-05 Score=55.55 Aligned_cols=63 Identities=11% Similarity=-0.116 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+..+...+...|++++|.+.|++..+... .+...|..+..+|...|++++|+..+++....
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344444555555555555555555544321 23445555555555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=54.35 Aligned_cols=93 Identities=8% Similarity=-0.054 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMK------VSTL 398 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~ 398 (500)
...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|++.+++..+.... + ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHH
Confidence 4455666666666777777777776666543 335666667777777777777777777777664321 2 4455
Q ss_pred HHHHHHHHhcCChhhHHHHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFE 419 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~ 419 (500)
..+..++...|++++|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 555666666666666554444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0017 Score=46.46 Aligned_cols=78 Identities=14% Similarity=0.106 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
..+..+...+...|++++|...|++..+... .+...+..+..+|...|++++|...+++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444455555555555555555555554431 234555555555555566666665555555432 22344444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0018 Score=49.00 Aligned_cols=79 Identities=10% Similarity=-0.005 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
.+...|+...+.. +.+...+..+...|...|++++|...|++..+... .+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555543 33455666666666666666666666666665432 245566666666666666666666666655
Q ss_pred h
Q 010807 423 N 423 (500)
Q Consensus 423 ~ 423 (500)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00083 Score=50.90 Aligned_cols=78 Identities=5% Similarity=0.024 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
|+..|++..+..+ .+...+..+...|...|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554422 245556666666666666666666666665543 23355566666666666666666666665554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00085 Score=49.44 Aligned_cols=64 Identities=22% Similarity=0.130 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|+..|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666666665422 455666666666666666666666666543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.003 Score=45.05 Aligned_cols=80 Identities=13% Similarity=0.035 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 445555555666666666666666655532 23455556666666666666666666666665432 2445555555444
Q ss_pred Hh
Q 010807 406 CM 407 (500)
Q Consensus 406 ~~ 407 (500)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00053 Score=54.76 Aligned_cols=86 Identities=10% Similarity=-0.050 Sum_probs=45.9
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNV----------SRAREIFDELSKLGKDMKVSTLNAMLEAYC 406 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 406 (500)
+.+.+++|...++...+.. +-+...|..+..++...+++ ++|+..|++.++.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3445566666666665543 33455566565565555443 3555555555554422 4555555555555
Q ss_pred hcC-----------ChhhHHHHHHHHHhC
Q 010807 407 MNG-----------LPTEADLLFENSHNM 424 (500)
Q Consensus 407 ~~g-----------~~~~A~~~~~~m~~~ 424 (500)
..| ++++|++.|++.++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 543 455555555555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0016 Score=52.02 Aligned_cols=70 Identities=6% Similarity=-0.142 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNV----------DQVNALFKELHESILAPDIYTYNGVMDAY 265 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 265 (500)
+.+.+++|++.+++..+.. +.+...|+.+..++...+++ ++|+..|++.++.... +..+|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4556666666666666432 44566666666666666554 3555555555554333 444555555555
Q ss_pred hhc
Q 010807 266 GKN 268 (500)
Q Consensus 266 ~~~ 268 (500)
...
T Consensus 91 ~~l 93 (158)
T 1zu2_A 91 TSF 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0052 Score=45.10 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010807 218 PNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKS 283 (500)
Q Consensus 218 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 283 (500)
.+...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666666666666666666666666655433 445566666666666666666666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0054 Score=58.53 Aligned_cols=85 Identities=7% Similarity=-0.076 Sum_probs=43.7
Q ss_pred cCCHhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCC--CCCHHHHHHHHH
Q 010807 338 ARLQGKAEYVFQKMTAM---KYTPS----FITYECIITMYGYCDNVSRAREIFDELSK-----LGK--DMKVSTLNAMLE 403 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~~~li~ 403 (500)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+ .|. +-...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35556666666554431 11121 34555666666666666666666655543 121 112334556666
Q ss_pred HHHhcCChhhHHHHHHHHH
Q 010807 404 AYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 404 ~~~~~g~~~~A~~~~~~m~ 422 (500)
.|..+|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0039 Score=59.51 Aligned_cols=87 Identities=13% Similarity=-0.033 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHHHHHH-----CCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HHHHHHHH
Q 010807 372 YCDNVSRAREIFDELSK-----LGK--DMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----G-VTPD-SSTYKLLY 437 (500)
Q Consensus 372 ~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li 437 (500)
..|++++|+.++++..+ .|. +....+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46899999999998765 221 112468999999999999999999999987642 2 1333 45789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 010807 438 KAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.012 Score=56.29 Aligned_cols=90 Identities=6% Similarity=-0.080 Sum_probs=49.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCC--CCCHHHH
Q 010807 333 INYGKARLQGKAEYVFQKMTAMK---YTPS----FITYECIITMYGYCDNVSRAREIFDELSK-----LGK--DMKVSTL 398 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~---~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~--~~~~~~~ 398 (500)
..+...|++++|..++++..+.. +.|+ ..+++.+..+|...|++++|+.++++..+ .|. +-...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445566666666666665421 1122 34556666666666666666666665543 121 1123455
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
+.|...|...|++++|+.++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666666666666666544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.044 Score=50.30 Aligned_cols=63 Identities=10% Similarity=-0.006 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
+..+|.++...+...|++++|+..+++....+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 44444444444444455555555555554432 3444444444444555555555555554444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.25 Score=45.32 Aligned_cols=73 Identities=14% Similarity=0.090 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010807 217 KPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITF 293 (500)
Q Consensus 217 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 293 (500)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 5567777777666666777888887777777664 56666666667777777777777777776665 3444444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=56.48 Aligned_cols=106 Identities=11% Similarity=-0.025 Sum_probs=78.6
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----C-CCCC-HHH
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLG---KDM----KVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----G-VTPD-SST 432 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~~ 432 (500)
+..+.+.|++++|+.++++..+.. +.| ...+++.|...|...|++++|+.++++.+.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667899999999999887621 112 3568899999999999999999999987642 2 2333 457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHH
Q 010807 433 YKLLYKAYTKANMKELVQKLLKRMEQN---GIVPNKRFFLEAL 472 (500)
Q Consensus 433 ~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll 472 (500)
++.|...|...|++++|..++++..+- -+-|+......+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 899999999999999999999988753 2334544444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.031 Score=58.42 Aligned_cols=157 Identities=13% Similarity=0.116 Sum_probs=100.9
Q ss_pred HHHHHcccCCHHHHHH-HHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 010807 115 LFEELGKSDKWLQCLE-VFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHT 193 (500)
Q Consensus 115 l~~~l~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 193 (500)
.+......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+.-. .- .....
T Consensus 605 ~~~~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l-- 663 (814)
T 3mkq_A 605 EFQTLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELAL-- 663 (814)
T ss_dssp HHHHHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHH--
T ss_pred HHhHHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhh--
Confidence 3444445688888876 44221 112234778888899999999887763221 11 12223
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKE 273 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 273 (500)
..|+++.|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+.
T Consensus 664 --~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 664 --KVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp --HHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHH
T ss_pred --hcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHH
Confidence 677899999886554 3678999999999999999999999988753 3445555555777776
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 274 MESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 274 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
..++.+.....|. ++....+|.+.|++++|++++.++
T Consensus 726 ~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 726 LVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6666555555432 233344455566666666665543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.17 Score=52.85 Aligned_cols=152 Identities=10% Similarity=0.046 Sum_probs=89.7
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 230 CAQARNVDQVNA-LFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308 (500)
Q Consensus 230 ~~~~g~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 308 (500)
....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.- . .- .......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-~~----f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-QK----FELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-HH----HHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-hh----eehhhhcCCHHH
Confidence 345677777766 44211 11223366677777788888877665311 1 11 223455688888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 309 MEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
|.++.+.+ .+...|..+...+.+.++++.|+..|..+.. |..+...|...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 87776432 3677888888888888888888888876643 33444455556666665555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 389 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
.|. ++.-..+|.+.|++++|++++.+
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 431 23334445556666666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.013 Score=42.51 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=29.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 368 TMYGYCDNVSRAREIFDELSKLGKDMKVS-TLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 368 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+...|++++|...|+++.+... .+.. .+..+..+|...|++++|+..|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344455555555555555555432 2344 5555555555555555555555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.11 Score=37.21 Aligned_cols=65 Identities=11% Similarity=0.030 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 394 KVSTLNAMLEAYCMNGL---PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 394 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|+..+..+..++...++ .++|..++++..... +-+......+...+.+.|++++|+.+|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444444433322 345555555544432 223444444444555555555555555555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.017 Score=41.82 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=30.3
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFI-TYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
..+...|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34445555555555555555432 22334 55555555555566666666665555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.08 Score=41.72 Aligned_cols=80 Identities=14% Similarity=-0.059 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhhHHHH
Q 010807 343 KAEYVFQKMTAMKYTPSFITYECIITMYGYCD---NVSRAREIFDELSKLGKDM--KVSTLNAMLEAYCMNGLPTEADLL 417 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 417 (500)
.+.+-|.+..+.| .++..+...+..++++.+ ++++++.+++.+.+.+ .| +...+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3344444444433 244444444445555544 3445555555554433 11 122333334444555555555555
Q ss_pred HHHHHhC
Q 010807 418 FENSHNM 424 (500)
Q Consensus 418 ~~~m~~~ 424 (500)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.11 Score=37.30 Aligned_cols=66 Identities=9% Similarity=-0.021 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 358 PSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
.+...+..+..++...++ .++|..++++..+... -++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555556555543333 5677777777776543 25666666677777777777777777777765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.34 Score=39.15 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=23.8
Q ss_pred hhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 266 GKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSL 316 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 316 (500)
.+.|+++.|.++.+++ .+...|..|.+.....|+++-|++.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555555555444 14455555555555555555555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.54 Score=35.80 Aligned_cols=60 Identities=7% Similarity=0.044 Sum_probs=23.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 010807 260 GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK 320 (500)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 320 (500)
..++.+...|+.|+-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333344444444444444443221 12333334444444444444444444444444333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.12 Score=40.71 Aligned_cols=83 Identities=13% Similarity=0.043 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG---LPTEADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELV 449 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a 449 (500)
.+..+.+-|.+..+.+. ++..+...+..++++.+ ++++++.+|++..+.. .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34555666665555543 56666667777777766 4557777777766653 23 345555666677777777777
Q ss_pred HHHHHHHHHC
Q 010807 450 QKLLKRMEQN 459 (500)
Q Consensus 450 ~~~~~~m~~~ 459 (500)
.++++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777653
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.17 Score=37.15 Aligned_cols=66 Identities=14% Similarity=-0.071 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 359 SFITYECIITMYGYCDNVSRAREIFDELSKLG------KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 359 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+...+..|...+.+.|+++.|...|+...+.. -.+...++..|..+|.+.|++++|+.+++++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 33444455555555666666666555544310 1123455666666666666666666666666553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.41 Score=42.19 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010807 196 KAKALAKALGYFQKMKGMERCKPN---IVTYNILLRACAQA-----RNVDQVNALFKELHESILAPDIYTYNGVMDAYGK 267 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 267 (500)
..+....|...+++..+. .|+ -..|..+...|.+. |+.++|.+.|++.++....-+..++......+++
T Consensus 175 Al~~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp CHHHHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHhHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 566778888888888764 455 55788888888884 8899999999988876543346777777787877
Q ss_pred c-CCHHHHHHHHHHHHhCCCC--CCHHHHHH
Q 010807 268 N-GMIKEMESVLSRMKSNQCK--PDIITFNL 295 (500)
Q Consensus 268 ~-g~~~~a~~~~~~m~~~~~~--~~~~~~~~ 295 (500)
. |+.+++.+.+++....... |+....+.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 4 8888888888888887655 55444433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.9 Score=36.71 Aligned_cols=127 Identities=13% Similarity=0.123 Sum_probs=92.3
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 300 YGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRA 379 (500)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A 379 (500)
....|+++.|.++.+++ .+...|..|.......|+++-|...|..... +..+.-.|...|+.++-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 45679999999998876 3788999999999999999999999987653 34566667778888887
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 380 REIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
.++-+.....|- ++.-..++...|+++++.++|.+.-. .|... ......|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 777766666552 46666778888999999999865332 22111 1122356777787777655
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.77 Score=34.98 Aligned_cols=63 Identities=14% Similarity=0.005 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
.++..++.+...|..+....++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444444455555555444443221 23444444445555555555555555555554444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.15 Score=44.93 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCCCC---HHHHHHHHHHHhc-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhh
Q 010807 343 KAEYVFQKMTAMKYTPS---FITYECIITMYGY-----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMN-GLPTE 413 (500)
Q Consensus 343 ~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~ 413 (500)
.|...+++..+. .|+ ...|..+...|.. -|+.++|.+.|++..+.+..-+..++..+...++.. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344444444442 233 3345555555555 266666666666666644322355555556666553 66666
Q ss_pred HHHHHHHHHhCCCC
Q 010807 414 ADLLFENSHNMGVT 427 (500)
Q Consensus 414 A~~~~~~m~~~~~~ 427 (500)
|.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666655443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.28 Score=35.87 Aligned_cols=66 Identities=5% Similarity=-0.034 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 010807 219 NIVTYNILLRACAQARNVDQVNALFKELHESI------LAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284 (500)
Q Consensus 219 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 284 (500)
+..-+..|...+.+.|+++.|...|+...+.. -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445566666666777777776666654421 1123444555555555555555555555555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.27 Score=38.31 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHhccCCHHHHHHHHHHHHHCC
Q 010807 324 TLPTFNSMIINYGKARLQ------GKAEYVFQKMTAMKYTPSFI----TYECIIT---MYGYCDNVSRAREIFDELSKLG 390 (500)
Q Consensus 324 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~----~~~~li~---~~~~~~~~~~A~~~~~~~~~~~ 390 (500)
|..+|-..+....+.|+. ++..++|++.... ++|+.. .|--+-- .+...+|.++|.++|+.+....
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 5556666655553 344310 0100000 0122356666666666665443
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 010807 391 KDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT 427 (500)
Q Consensus 391 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 427 (500)
-+. ..+|-.....-.++|+...|.+++...+..+..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 333 555555555555666666666666666655533
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=1.2 Score=41.59 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=56.2
Q ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 010807 112 CFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRN-----SGCRPDPSVYN 184 (500)
Q Consensus 112 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 184 (500)
...+++.....|++.+|+..++.+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445566667799999998888887764 66888999999999999999999999988754 48888876643
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.55 Score=36.56 Aligned_cols=115 Identities=9% Similarity=-0.005 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHhccCCH------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhhHHHHHHHHHhC
Q 010807 358 PSFITYECIITMYGYCDNV------SRAREIFDELSKLGKDMKVS-TLNAMLE------AYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 358 ~~~~~~~~li~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~-~~~~li~------~~~~~g~~~~A~~~~~~m~~~ 424 (500)
-|..+|-..+....+.|+. ++.+++|++.... ++|+.. .|...|. .+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4566777777777767777 7788888887764 444321 1111111 123448999999999998764
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 425 GVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETF 475 (500)
Q Consensus 425 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 475 (500)
.-.- ...|......-.+.|+...|.+++.+....+-.| ...+...++-.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 3222 7777777777789999999999999999876554 34445555444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.02 E-value=0.5 Score=35.74 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 393 MKVSTLNAMLEAYCMNGLPTE---ADLLFENSHNMGVTP--DSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 393 ~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
++..+--.+.+++.+..+... ++.++++....+ .| .....-.|.-++.+.|++++|.++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444445544444333 445555444432 12 122333334455555555555555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.86 E-value=6.7 Score=37.32 Aligned_cols=258 Identities=10% Similarity=0.021 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHhhcCC
Q 010807 198 KALAKALGYFQKMKG----MERCKPNIVTYNILLRACAQARNVDQVNALFKELHES-ILAPDIYT--YNGVMDAYGKNGM 270 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~--~~~ll~~~~~~g~ 270 (500)
++++.|++.+..+.+ ......+......++..|...|+++...+.+..+.+. |..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 556666665544432 1234555667778888888888888887777665433 32222211 1222222222332
Q ss_pred HHH--HHHHHHHHH---hCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHh
Q 010807 271 IKE--MESVLSRMK---SNQCKP---DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KEKPT---LPTFNSMIINYGK 337 (500)
Q Consensus 271 ~~~--a~~~~~~m~---~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~ 337 (500)
.+. -..+.+... +..+.. -......|...|...|++.+|.+++.++... +.... ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 222 111221111 111111 1223456778888899999999999887532 22211 3466777888889
Q ss_pred cCCHhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHH----HHHHHH
Q 010807 338 ARLQGKAEYVFQKMTA----MKYTPS--FITYECIITMYGYCDNVSRAREIFDELSKL-GKDMKVSTLNA----MLEAYC 406 (500)
Q Consensus 338 ~~~~~~a~~~~~~m~~----~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~----li~~~~ 406 (500)
.+++.+|..++..+.. ....|+ ...+...+..+...+++.+|...|.++.+. ...-|...+.. ++.+..
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i 269 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV 269 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 9999999988887642 222222 345677788888889999888887776541 11113322222 222222
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 010807 407 MNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA--NMKELVQKLLKR 455 (500)
Q Consensus 407 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~ 455 (500)
-.+....-..++.........++...|..++.+|... .+++.+.+.|..
T Consensus 270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCS
T ss_pred hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHH
Confidence 2222222233333322222235677888888888664 356666655543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.48 Score=44.42 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 010807 399 NAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRF 467 (500)
Q Consensus 399 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 467 (500)
..++..+...|++++|...+..+.... +-+...+..++.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 334445555555555555555554432 33455555555555555555555555555432 255555544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.62 E-value=3.4 Score=39.40 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=101.8
Q ss_pred CCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH----hcc
Q 010807 234 RNVDQVNALFKELHES-----ILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN-QCKPDIITFNLLIDSY----GKR 303 (500)
Q Consensus 234 g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~----~~~ 303 (500)
|+++.|++.+..+.+. ...........++..|...|+++...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 6788888877666542 24446677888888899999998888877766554 322222 23333322 222
Q ss_pred CCHHH--HHHHHHHHH---hCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHh--CCCCCC---HHHHHHHHHHH
Q 010807 304 QAFDK--MEQVFKSLM---HSKEKPT---LPTFNSMIINYGKARLQGKAEYVFQKMTA--MKYTPS---FITYECIITMY 370 (500)
Q Consensus 304 ~~~~~--a~~~~~~~~---~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~---~~~~~~li~~~ 370 (500)
...+. -..+.+.+. +..+-.. ......|...|...|++.+|..++..+.. .|.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 111111111 1111111 12234566667777777777777777654 222111 24555666677
Q ss_pred hccCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 010807 371 GYCDNVSRAREIFDELSK----LGKDMK--VSTLNAMLEAYCMNGLPTEADLLFENSH 422 (500)
Q Consensus 371 ~~~~~~~~A~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 422 (500)
...+++.+|..++.++.. ....|+ ...+..++..+...++|.+|...|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777777777777766532 211121 2344555666666777777766665554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.59 E-value=1.2 Score=33.62 Aligned_cols=87 Identities=9% Similarity=0.006 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHcCCH
Q 010807 159 GQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNV 236 (500)
Q Consensus 159 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~ 236 (500)
.....+.+-|.+....|. ++..+--.+..+++++. ...+..+++.+++.+.... .| .....-.|.-++.+.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~-~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTR-YNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSS-SHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence 334555566666555443 56666556666777765 5677778888888877521 22 233444566677888888
Q ss_pred HHHHHHHHHHHhC
Q 010807 237 DQVNALFKELHES 249 (500)
Q Consensus 237 ~~a~~~~~~m~~~ 249 (500)
++|.+.++.+++.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.11 E-value=0.92 Score=46.13 Aligned_cols=51 Identities=10% Similarity=-0.066 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 010807 427 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSSSL 479 (500)
Q Consensus 427 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 479 (500)
+-+..-|..|.....+.+++++|.+.|+..... +-+......+|+-|.+.+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcC
Confidence 445667888888888888888888888888754 466677788888887654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.74 E-value=1.3 Score=45.17 Aligned_cols=50 Identities=6% Similarity=-0.093 Sum_probs=26.7
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 370 YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 370 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|...|+++.|+++-++..... +-+-.+|-.|..+|...|+++.|+-.++.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 444555555555555555532 22355555555555555555555555554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.32 E-value=19 Score=37.55 Aligned_cols=246 Identities=10% Similarity=-0.049 Sum_probs=138.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhCCCCCCHH--HHHHHH
Q 010807 228 RACAQARNVDQVNALFKELHESIL-------APDIYTYNGVMDAYGKNGM-IKEMESVLSRMKSNQCKPDII--TFNLLI 297 (500)
Q Consensus 228 ~~~~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~--~~~~li 297 (500)
-+....|..+++..++.......- .+....-..+.-+++-.|. -+++.+.+..+....- +... .--+|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 334455555567776666544211 0111112222223322332 2456666666555321 1111 122344
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhcc
Q 010807 298 DSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI--INYGKARLQGKAEYVFQKMTAMKYTPSFIT--YECIITMYGYC 373 (500)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~ 373 (500)
..|...|+-+....++..+.+.. +..+...+. -++...|+.+.+..+.+.+.... .|.... ..++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 45667788888888887766532 333333333 34446788888888888887642 222222 12445578888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMK-ELVQKL 452 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~ 452 (500)
|+.....+++..+.+.. ..++.-.-.+.-++...|+.+.+.+++..+.+.+ .|...--..+.-+....|.. .++..+
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 99888888988888643 2233333333344555777777788887766654 45554444455555555543 677888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCCCCC
Q 010807 453 LKRMEQNGIVPNKRFFLEALETFSSSLAGSQ 483 (500)
Q Consensus 453 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 483 (500)
+..+.. .+|..+=...+.+++..|.+..
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHcc---CCCHHHHHHHHHHHHHHhcCCc
Confidence 888874 3577777778888887776643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.25 E-value=12 Score=40.61 Aligned_cols=21 Identities=10% Similarity=-0.146 Sum_probs=11.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHH
Q 010807 260 GVMDAYGKNGMIKEMESVLSR 280 (500)
Q Consensus 260 ~ll~~~~~~g~~~~a~~~~~~ 280 (500)
.+..+|...|++++|.+.|.+
T Consensus 847 l~g~~~L~~ge~~~A~~~F~k 867 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKT 867 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 334455556666666666544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.46 E-value=5.7 Score=28.41 Aligned_cols=48 Identities=6% Similarity=0.088 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.-++..-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444555555555556666666666666666666666666666665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.40 E-value=27 Score=37.88 Aligned_cols=145 Identities=12% Similarity=-0.026 Sum_probs=95.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-------------------
Q 010807 296 LIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKY------------------- 356 (500)
Q Consensus 296 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------------- 356 (500)
++..+.+.+.++.+.++..- .+.+...--.+..+|...|++++|...|++.-. |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 33344445555555443322 233555555677888899999999999976421 11
Q ss_pred ----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 010807 357 ----TPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKV----STLNAMLEAYCMNGLPTEADLLFENSHNMGVTP 428 (500)
Q Consensus 357 ----~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 428 (500)
..-..-|..++..+.+.+.++.+.++-....+...+-+. ..|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 011234677888888899999988888776653322222 3688899999999999999999888776543
Q ss_pred CHHHHHHHHHHHHHcCCHHH
Q 010807 429 DSSTYKLLYKAYTKANMKEL 448 (500)
Q Consensus 429 ~~~~~~~li~~~~~~g~~~~ 448 (500)
-...+..|+...+..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35667777777776665443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.35 E-value=16 Score=31.71 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=74.2
Q ss_pred HHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcch
Q 010807 117 EELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDK 196 (500)
Q Consensus 117 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 196 (500)
..+-+.|++++|++....-.+.. +.|...-..++..+|-.|++++|.+=++...+. .|+...-..+...++ .
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI----~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV----K 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH----H
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHH----H
Confidence 45667899999999888777764 778999999999999999999999999988775 454433322222222 1
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh
Q 010807 197 AKALAKALGYFQKMKGMERCK-PNIVTYNILLRACA--QARNVDQVNALFKELHE 248 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~ 248 (500)
...... ++|.-- ...++. ....-...++.+.. ..|+.++|..+-.++.+
T Consensus 77 aE~~R~--~vfaG~-~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 77 AAQARK--DFAQGA-ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHHHHH--HHTTSC-CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHcCC-CCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 111111 111110 001111 11223334444443 46899998888877754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=84.98 E-value=0.00021 Score=66.99 Aligned_cols=219 Identities=12% Similarity=0.153 Sum_probs=126.2
Q ss_pred CCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010807 92 DKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEM 171 (500)
Q Consensus 92 ~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 171 (500)
+...+.+.+++|.++.++.....+++...+.|.+++-+..+.-.++.. -+..+=+.|+.+|++.++..+-.+++.
T Consensus 66 ~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-- 140 (624)
T 3lvg_A 66 QKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-- 140 (624)
T ss_dssp TSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS--
T ss_pred ccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc--
Confidence 334566668888999999999999999999999998888777666542 234455788999999998775444431
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 010807 172 RNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESIL 251 (500)
Q Consensus 172 ~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 251 (500)
.|+..-...+..-|. ..|.++.|.-+|..+... ..|...+.+.|++..|.+.-+..
T Consensus 141 -----~~N~A~iq~VGDrcf----~e~lYeAAKilys~isN~----------akLAstLV~L~~yq~AVdaArKA----- 196 (624)
T 3lvg_A 141 -----GPNNAHIQQVGDRCY----DEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQAAVDGARKA----- 196 (624)
T ss_dssp -----CCSSSCTHHHHHHHH----HSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGGSSTTTTTTC-----
T ss_pred -----CCCcccHHHHHHHHH----HccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 355555555666665 445566666666555432 22333344455555444322211
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010807 252 APDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSM 331 (500)
Q Consensus 252 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (500)
-++.||..+-.+|...+.+.-|.-.--.+.-. ......++..|...|.+++-+.+++.-... .......|+-|
T Consensus 197 -ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 197 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp -CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred -CChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 14455555556666666555443332222211 111234455566666666666666665532 23355666666
Q ss_pred HHHHHhcCCHhHHHHH
Q 010807 332 IINYGKARLQGKAEYV 347 (500)
Q Consensus 332 i~~~~~~~~~~~a~~~ 347 (500)
...|++- ++++..+.
T Consensus 270 aILYsKY-~PeKlmEH 284 (624)
T 3lvg_A 270 AILYSKF-KPQKMREH 284 (624)
T ss_dssp HHHHHSS-CTTHHHHH
T ss_pred HHHHHhc-CHHHHHHH
Confidence 6666654 33443333
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=33 Score=34.08 Aligned_cols=309 Identities=7% Similarity=-0.032 Sum_probs=161.0
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHcC
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIA-DTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVY----NALITAHLHT 193 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~ 193 (500)
..+.|++..+..+...+.. ++. ....|..+...+ .....++...++.+- |+.... +..+..+.
T Consensus 16 a~~~~~~~~~~~l~~~l~~---~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~------~~~p~~~~Lr~~~l~~l~-- 83 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKD---YPLYPYLEYRQITDDL-MNQPAVTVTNFVRAN------PTLPPARTLQSRFVNELA-- 83 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTT---STTHHHHHHHHHHHTG-GGCCHHHHHHHHHHC------TTCHHHHHHHHHHHHHHH--
T ss_pred HHHCCCHHHHHHHHHhhcC---CCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHC------CCChhHHHHHHHHHHHHH--
Confidence 3456788777766555432 222 112333333222 122344444444332 333222 33334444
Q ss_pred cchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH-
Q 010807 194 RDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIK- 272 (500)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~- 272 (500)
+.+++...+.++.. .+.+...-.....+....|+..+|......+-..|.. ....+..++..+.+.|.+.
T Consensus 84 --~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 84 --RREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp --HTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCH
T ss_pred --hCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCH
Confidence 33345544443322 2445555556777788889988888877777666533 4456677888888766543
Q ss_pred -HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC---------CCCCCHHHHHH---HHHHHHhcC
Q 010807 273 -EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHS---------KEKPTLPTFNS---MIINYGKAR 339 (500)
Q Consensus 273 -~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~---li~~~~~~~ 339 (500)
....=++.+...| +...-..++... ..+ .....+.+..+... ...++...-.. .+.-+.+ .
T Consensus 155 ~~~~~R~~~al~~~---~~~~a~~l~~~l-~~~-~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 155 LAYLERIRLAMKAG---NTGLVTVLAGQM-PAD-YQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHTC-CGG-GHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHhC-CHH-HHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-c
Confidence 3444445555543 222222222211 011 11001111111111 01223322122 2222333 4
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHH
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFIT----YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEAD 415 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 415 (500)
+.+.|...+....... ..+... ...+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 7789999998886543 233322 2334444445553556666666655433 34444555555566789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 416 LLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 416 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
..|+.|..... .......-+.+++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999876422 2344445566788899999999999999875
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.57 E-value=9.3 Score=29.00 Aligned_cols=61 Identities=5% Similarity=0.042 Sum_probs=36.4
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
.-+...-++.+....+.|++.+..+.+.+|-+.+|+..|.++|+.++.+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3445555555656666677777777777777777777777777666543 122334455444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.51 E-value=10 Score=27.16 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.+
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666666655543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.97 E-value=53 Score=34.35 Aligned_cols=154 Identities=10% Similarity=0.066 Sum_probs=67.5
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFN---SMIINYGKARLQ 341 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~ 341 (500)
+.-.|+-+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+... ..| ..-|. .+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhcCCCCH
Confidence 445555555555555554431 111222222222333455666666666555542 111 11121 233345556666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHH
Q 010807 342 GKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLP-TEADLLFEN 420 (500)
Q Consensus 342 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~ 420 (500)
.....++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|.+.---.+.-+....|.. .+|+.++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 65555666665531 1122222222223333455455555555444433 23333333333333334443 456666666
Q ss_pred HHh
Q 010807 421 SHN 423 (500)
Q Consensus 421 m~~ 423 (500)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.54 E-value=15 Score=27.83 Aligned_cols=71 Identities=6% Similarity=-0.031 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 177 RPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 177 ~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.|+..+--.+..+++++. ...+..+++.+++.+.... .......+--|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~-~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 455555444555555554 4556667777776665421 1112344455556677777777777777776654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.98 E-value=13 Score=28.22 Aligned_cols=59 Identities=8% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 273 EMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 273 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
+..+-++.+...++.|++....+.+.+|-+.+|+..|+++|+-+..+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44455555555666677777777777777777777777777666544 222333454444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.65 E-value=8.7 Score=36.35 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 327 TFNSMIINYGKARLQGKAEYVFQKMTAMKYTP--SFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 327 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
+...+...|.+.|++++|.+.+.++......+ -...+-.+++.+...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45567777777777777777777776532222 245566666777777777777777766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 500 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.87 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.91 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.15 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.09 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.96 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.76 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.68 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.65 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.38 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.37 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.33 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.16 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.61 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.45 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.37 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.32 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.1 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.27 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 80.56 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.1e-19 Score=166.06 Aligned_cols=344 Identities=10% Similarity=0.033 Sum_probs=267.3
Q ss_pred HcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHH
Q 010807 119 LGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAK 198 (500)
Q Consensus 119 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 198 (500)
..+.|++++|++.|+.+.+.. +.+...+..+..++.+.|++++|+..|++..+.. +-+...|..+...+. ..|
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~----~~g 81 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK----ERG 81 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----HHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhh----hhc
Confidence 345588888888888887763 4567778888888888888888888888887753 234567777777777 677
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHH----------------------------------HHHHHHHcCCHHHHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNI----------------------------------LLRACAQARNVDQVNALFK 244 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------------------------ll~~~~~~g~~~~a~~~~~ 244 (500)
++++|+..+....... +.+...+.. ........+....+...+.
T Consensus 82 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 7888888887776532 222222222 2233333444455555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 010807 245 ELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPT 324 (500)
Q Consensus 245 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (500)
........ +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|+..++....... .+
T Consensus 160 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~ 236 (388)
T d1w3ba_ 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred HhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hH
Confidence 55444322 5677788888999999999999999998876433 677889999999999999999999999887643 47
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010807 325 LPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEA 404 (500)
Q Consensus 325 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 404 (500)
...+..+...+...|++++|...|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+..+
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 7888889999999999999999999998864 4457889999999999999999999999988864 4578899999999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCC
Q 010807 405 YCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPN-KRFFLEALETFSSSL 479 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 479 (500)
+...|++++|+..|++.++.. +-+..++..+..+|.+.|++++|...|++..+. .|+ ...|..+-..+.+.|
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 999999999999999998763 335778999999999999999999999998854 565 566777777766555
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.1e-18 Score=161.57 Aligned_cols=347 Identities=11% Similarity=0.032 Sum_probs=270.8
Q ss_pred CccchhHHHHHHHHHHhcCCCchHHHHHHHhhhccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHH
Q 010807 73 KSEELESKELVRVLMRSFSDKEPLVRTLNKYVKVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLI 152 (500)
Q Consensus 73 ~~~~~~a~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 152 (500)
.|...+|...+..+++..|+..... ..+-..+.+.|++++|+..|+.+.+.. +.+..+|..+.
T Consensus 12 ~G~~~~A~~~~~~~l~~~p~~~~~~---------------~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~ 74 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQEPDNTGVL---------------LLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLG 74 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHH---------------HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 4667889999988888766543322 223334456799999999999998874 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcc------------------------------hHHHHHH
Q 010807 153 AVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRD------------------------------KAKALAK 202 (500)
Q Consensus 153 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~------------------------------~~~~~~~ 202 (500)
.++.+.|++++|+..+....+.... +...+............ ..+....
T Consensus 75 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
T d1w3ba_ 75 NVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHH
T ss_pred HHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 9999999999999999999876422 22222111111110000 1111223
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010807 203 ALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMK 282 (500)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 282 (500)
+...+.+.... .+.+...+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+.+..
T Consensus 154 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 230 (388)
T d1w3ba_ 154 AKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred hHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhH
Confidence 33444443321 1446778888899999999999999999998876543 67889999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH
Q 010807 283 SNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFIT 362 (500)
Q Consensus 283 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 362 (500)
..... +...+..+..++.+.|++++|+..|++..+..+ .+..++..+...+...|++++|...++...... +.+...
T Consensus 231 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 307 (388)
T d1w3ba_ 231 SLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS 307 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchh
Confidence 86544 677888899999999999999999999988643 368889999999999999999999999988764 567888
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 010807 363 YECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK 442 (500)
Q Consensus 363 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 442 (500)
+..+...+...|++++|++.|++..+..+ -+..++..+..+|.+.|++++|+..|++.++.. +-+...|..+..+|.+
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 99999999999999999999999988653 368889999999999999999999999998763 2357789999999988
Q ss_pred cCC
Q 010807 443 ANM 445 (500)
Q Consensus 443 ~g~ 445 (500)
.||
T Consensus 386 ~~D 388 (388)
T d1w3ba_ 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred cCC
Confidence 875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=7e-13 Score=121.39 Aligned_cols=226 Identities=8% Similarity=-0.016 Sum_probs=111.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 229 ACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDK 308 (500)
Q Consensus 229 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 308 (500)
.+.+.|++++|+..|+.+.+..+. +..+|..+..++...|++++|...+.+..+.... +...+..+..+|...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccccccc
Confidence 344455555555555554444322 3444444445555555555555555544443221 34444444444555555555
Q ss_pred HHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhcc
Q 010807 309 MEQVFKSLMHSKEKP--------------TLPTFNSMIINYGKARLQGKAEYVFQKMTAMK-YTPSFITYECIITMYGYC 373 (500)
Q Consensus 309 a~~~~~~~~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~ 373 (500)
|++.+++........ +.......+..+...+.+.++...+....+.. -..+..++..+...+...
T Consensus 106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 185 (323)
T d1fcha_ 106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185 (323)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 555554443321100 00001111122233344455555555554422 123445555566666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLL 453 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 453 (500)
|++++|...|++...... -+...|..+..+|...|++++|++.|++.++.. +-+...+..+..+|.+.|++++|+..|
T Consensus 186 ~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 263 (323)
T d1fcha_ 186 GEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHF 263 (323)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666655432 245566666666666666666666666655542 223555666666666666666666666
Q ss_pred HHHHH
Q 010807 454 KRMEQ 458 (500)
Q Consensus 454 ~~m~~ 458 (500)
++..+
T Consensus 264 ~~al~ 268 (323)
T d1fcha_ 264 LEALN 268 (323)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.4e-13 Score=122.17 Aligned_cols=268 Identities=10% Similarity=0.044 Sum_probs=158.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRP-DPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRA 229 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 229 (500)
....+.+.|++++|+..|+++.+. .| +...|..+..++. ..|++++|+..|++..+.. +-+...|..+...
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~----~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 96 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQA----ENEQELLAISALRRCLELK--PDNQTALMALAVS 96 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----HcCChHHHHHHHHhhhccc--ccccccccccccc
Confidence 445566666666666666666654 34 3455555555555 4455666666666655422 3345556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 230 CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 230 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (500)
|...|++++|.+.++....... +............ ...+.......+..+...+.+.+|
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST--TTGGGCC----------------------------------CTTHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHhcc--chHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHH
Confidence 6666666666666666554321 1100000000000 000001111112223344566777
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 310 EQVFKSLMHSKE-KPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.+.|.+.....+ ..+..++..+...+...|++++|...++...... +-+..+|..+...|...|++++|.+.|++..+
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHH
Confidence 777777665432 2356777778888888888888888888877653 33577788888888888888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHHcCCHHHH
Q 010807 389 LGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM----------GVTPDSSTYKLLYKAYTKANMKELV 449 (500)
Q Consensus 389 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~a 449 (500)
... -+..+|..+..+|.+.|++++|+..|++.++. ........|..+-.++...|+.+.+
T Consensus 235 ~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 235 LQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred Hhh-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 542 35778888888888888888888888887652 1111233455555565555555433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=3.1e-09 Score=95.93 Aligned_cols=233 Identities=9% Similarity=0.001 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG-MIKEMESVLSRMKSNQCKPDIITFNLLID 298 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 298 (500)
...|+.+...+.+.+.+++|+++++.+++..+. +...|+....++...| ++++|+..+++..+.... +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 446777777888889999999999999887555 6777888888888776 489999999998877544 7888888888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN--- 375 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~--- 375 (500)
.+.+.|++++|++.++++++..+. +...|..+...+...|++++|...++.+++.. +-+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 999999999999999999886443 78899999999999999999999999998864 3467777777666655554
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHc--C-----
Q 010807 376 ---VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PDSSTYKLLYKAYTKA--N----- 444 (500)
Q Consensus 376 ---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~--g----- 444 (500)
+++|++.+....+..+ -+...|+.+...+.. ...+++.+.++...+.... .+...+..++..|... +
T Consensus 199 ~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 6788888888888653 368888877666544 4467888888877654322 2455666666666432 2
Q ss_pred --CHHHHHHHHHHHHH
Q 010807 445 --MKELVQKLLKRMEQ 458 (500)
Q Consensus 445 --~~~~a~~~~~~m~~ 458 (500)
.+++|.+++..+.+
T Consensus 277 ~~~~~ka~~l~~~l~~ 292 (315)
T d2h6fa1 277 EDILNKALELCEILAK 292 (315)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 24455555554443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=4.3e-09 Score=94.90 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=144.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010807 270 MIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQ 349 (500)
Q Consensus 270 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 349 (500)
..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++++.........|...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45778888888876544556667777888888889999999999988876554445678888888888899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CC
Q 010807 350 KMTAMKYTPSFITYECIITM-YGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMG-VT 427 (500)
Q Consensus 350 ~m~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 427 (500)
.+.+.+ +.+...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+++.|..+|++.+... ..
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 988765 3334444433332 345688999999999888863 4468889999999999999999999999987753 33
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 428 PD--SSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 428 p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
|+ ...|...+..-...|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 457888888778889999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=3.6e-09 Score=95.38 Aligned_cols=222 Identities=8% Similarity=0.018 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH--------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 199 ALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ--------------ARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
..+.+..+|+++... ++.+...|...+..+.+ .+..++|..+|+...+...+-+...+...+..
T Consensus 31 ~~~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 31 ITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 344555566665532 24455566555544332 23457888899998876555567778888888
Q ss_pred HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHhH
Q 010807 265 YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMII-NYGKARLQGK 343 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~ 343 (500)
..+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|+...+.++. +...|..... -+...|+.+.
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~ 187 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHH
Confidence 8999999999999999987654444567888999999999999999999999887544 4444444433 3445689999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 010807 344 AEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLG-KDM--KVSTLNAMLEAYCMNGLPTEADLLFEN 420 (500)
Q Consensus 344 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 420 (500)
|..+|+.+.... +.+...|...+..+.+.|+++.|..+|++..... ..| ....|...+..-...|+.+.+..++++
T Consensus 188 a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998863 5568889999999999999999999999988753 233 256889888888899999999999998
Q ss_pred HHhC
Q 010807 421 SHNM 424 (500)
Q Consensus 421 m~~~ 424 (500)
+.+.
T Consensus 267 ~~~~ 270 (308)
T d2onda1 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.8e-08 Score=92.15 Aligned_cols=272 Identities=11% Similarity=-0.001 Sum_probs=162.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCC----C
Q 010807 148 YSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD----PSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKP----N 219 (500)
Q Consensus 148 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 219 (500)
.......+...|++++|+.++++..+.....+ ...+..+...+. ..|++++|+..|++......-.+ .
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 44445566777888888888887766421111 123444445555 66667777777776643111011 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC--C-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCC
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHE----SILAP--D-IYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCKP 288 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p--~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~ 288 (500)
...+..+...+...|++..+...+..... .+... . ...+..+...+...|+++.+...+...... +...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 170 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence 33556667778888888888888776543 11111 1 234455666777888888888888776643 2222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC---C
Q 010807 289 DIITFNLLIDSYGKRQAFDKMEQVFKSLMHS--KEKP----TLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTP---S 359 (500)
Q Consensus 289 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~ 359 (500)
....+..+...+...+++..+...+.+.... .... ....+..+...+...|++++|...+.......... .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 250 (366)
T d1hz4a_ 171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 250 (366)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence 3445555666677777777777777654331 1111 12344555666777788888877777665432221 2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSK----LGKDM-KVSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
...+..+..++...|++++|...++.... .+..| ....+..+..+|...|++++|.+.+++..+
T Consensus 251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455667777777888888777776653 22222 234566677777777888888777776543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.1e-08 Score=92.27 Aligned_cols=195 Identities=8% Similarity=0.038 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCcchHH-HHHHHHHHHHHhhcCCCCCCCHHHHH
Q 010807 147 IYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPD-PSVYNALITAHLHTRDKAK-ALAKALGYFQKMKGMERCKPNIVTYN 224 (500)
Q Consensus 147 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (500)
.|+.+..++.+.+..++|+.+++++++. .|+ ...|+....++. ..+ ++++|+..+++..... +-+..+|+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~----~l~~~~~eal~~~~~al~~~--p~~~~a~~ 116 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----SLQKDLHEEMNYITAIIEEQ--PKNYQVWH 116 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----HTTCCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHH----HhCcCHHHHHHHHHHHHHHH--HhhhhHHH
Confidence 3444444555555555555555555553 232 233444443333 222 2555555555554322 33455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010807 225 ILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQ 304 (500)
Q Consensus 225 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 304 (500)
.+...+.+.|++++|+..++.+.+.... +...|..+...+.+.|++++|++.++++.+.... +...|+.+..++.+.+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcc
Confidence 5555666666666666666665554333 4555555666666666666666666665554333 4444544444433322
Q ss_pred C------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 010807 305 A------FDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTA 353 (500)
Q Consensus 305 ~------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 353 (500)
. +++|++.+...++..+. +...|+.+...+... ..+++...++...+
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDR-GLSKYPNLLNQLLD 247 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTT-CGGGCHHHHHHHHH
T ss_pred ccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhc-ChHHHHHHHHHHHH
Confidence 2 45555555555554322 455555554443332 23445555554444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2.3e-08 Score=91.55 Aligned_cols=286 Identities=11% Similarity=0.064 Sum_probs=205.1
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHH
Q 010807 196 KAKALAKALGYFQKMKGMERCKPN-----IVTYNILLRACAQARNVDQVNALFKELHESIL-APD----IYTYNGVMDAY 265 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~ 265 (500)
..|++++|+.++++..... +.+ ...++.+...|...|++++|...|++..+... .++ ...+..+...+
T Consensus 24 ~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 24 NDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 6788999999999987632 222 34677888999999999999999998765321 112 34556677788
Q ss_pred hhcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHH
Q 010807 266 GKNGMIKEMESVLSRMKS----NQCK--P-DIITFNLLIDSYGKRQAFDKMEQVFKSLMHSK----EKPTLPTFNSMIIN 334 (500)
Q Consensus 266 ~~~g~~~~a~~~~~~m~~----~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~ 334 (500)
...|++..+...+..... .+.. + ....+..+...+...|+++.+...+....... .......+..+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 899999999999887653 2211 1 12355667788899999999999998876532 22234566777778
Q ss_pred HHhcCCHhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHH
Q 010807 335 YGKARLQGKAEYVFQKMTAM--KYTPS----FITYECIITMYGYCDNVSRAREIFDELSKLGKD---MKVSTLNAMLEAY 405 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~--~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~ 405 (500)
+...++...+...+...... ..... ...+..+...+...|+.++|...+....+.... .....+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 88899999998888766542 11111 234566777888999999999999887764322 2345667788999
Q ss_pred HhcCChhhHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC----CHHHHHHHH
Q 010807 406 CMNGLPTEADLLFENSHN----MGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQN----GIVP----NKRFFLEAL 472 (500)
Q Consensus 406 ~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p----~~~~~~~ll 472 (500)
...|++++|...+++... .+..|+ ..++..+...|...|++++|.+.+++..+. |... ....+..++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 999999999999998763 343443 456777888999999999999999987643 4432 223456666
Q ss_pred HHHhcCCCCCC
Q 010807 473 ETFSSSLAGSQ 483 (500)
Q Consensus 473 ~~~~~~g~~~~ 483 (500)
..+...+....
T Consensus 342 ~~l~~~~~l~e 352 (366)
T d1hz4a_ 342 RQLIQLNTLPE 352 (366)
T ss_dssp HHHHHTTCSCH
T ss_pred HHHHhcCCChH
Confidence 67766665543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.6e-09 Score=92.69 Aligned_cols=220 Identities=8% Similarity=-0.115 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 010807 198 KALAKALGYFQKMKGMERCKP--NIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEME 275 (500)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 275 (500)
...+.++.-+++........+ ...+|..+...|.+.|++++|+..|++.++..+. +..+|..+..+|.+.|++++|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhh
Confidence 445566666666664222111 2346777888999999999999999998876544 7788888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 010807 276 SVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMK 355 (500)
Q Consensus 276 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 355 (500)
+.|+++.+.... +..++..+..+|...|++++|++.|+...+..+. +......+..++.+.+..+....+........
T Consensus 92 ~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 92 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999998886443 5667888888888999999999999988775432 45554455555566666666666655555532
Q ss_pred CCCCHHHHHHHHHHHhccCC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 356 YTPSFITYECIITMYGYCDN----VSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 356 ~~~~~~~~~~li~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
..+ ..++ ++..+..... .+.+...+....... +-...+|..+...|...|++++|...|++.+..
T Consensus 170 ~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 KEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 221 1122 2222222222 222222222111111 011345666777888888888888888887765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=8.9e-10 Score=100.82 Aligned_cols=276 Identities=9% Similarity=0.020 Sum_probs=179.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH---HHHHHcCc---chHHHHHHHHHHHHHhhcCCCCCCCHHHH
Q 010807 151 LIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNAL---ITAHLHTR---DKAKALAKALGYFQKMKGMERCKPNIVTY 223 (500)
Q Consensus 151 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l---i~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (500)
++....+.+..++|+++++...+. .|+.. .|+.. +..+...+ ...+.+++|+.+|+...... +.+...|
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~ 110 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTW 110 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHH
Confidence 333333333447788888877764 45543 23221 12121111 15677889999999987532 5567778
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 224 NILLRACAQAR--NVDQVNALFKELHESILAPDIYTYN-GVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY 300 (500)
Q Consensus 224 ~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 300 (500)
..+..++...+ ++++|+..++.+...... +...+. .....+...+.+++|+..++.+.+.... +...|+.+..++
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~ 188 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 77777777765 478899999988776443 455544 4446777788999999999888887654 778888888888
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 380 (500)
.+.|++++|...++...+. .|+ .......+...+..+++...+....... +++...+..+...+...++.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence 8888887776555433221 111 1122334455666677777777776654 344445566666777778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPD-SSTYKLLYKAYT 441 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 441 (500)
..+.+..+..+ -+..+|..+..+|...|++++|++.+++..+. .|+ ..-|..|...+.
T Consensus 263 ~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 263 KELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 88888777542 24667777888888888888888888888775 454 344454544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=7.9e-09 Score=90.43 Aligned_cols=218 Identities=13% Similarity=-0.012 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010807 235 NVDQVNALFKELHESILAP---DIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQ 311 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 311 (500)
+.+.++.-+++........ ...+|..+..+|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666766543211 2346777788999999999999999999987544 78889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 010807 312 VFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGK 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~ 391 (500)
.|++..+..+. +..++..+..+|...|++++|...++...+.. +.+......+...+.+.+..+.+..+.........
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 99999986443 56788899999999999999999999998864 33455554555555666666666666666555432
Q ss_pred CCCHHHHHHHHHHHHhcCCh----hhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 392 DMKVSTLNAMLEAYCMNGLP----TEADLLFENSHNMGVTPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 392 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
.+ ..++ ++..+...... +.+...+..... ..|+ ..+|..+...+...|++++|...|++..+..
T Consensus 171 ~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22 2222 22222222111 111111111111 1122 3467778889999999999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=2.2e-09 Score=98.14 Aligned_cols=258 Identities=7% Similarity=-0.081 Sum_probs=185.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHH----------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 010807 200 LAKALGYFQKMKGMERCKPNIVTYNILLRA----------CAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNG 269 (500)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 269 (500)
.++|++++++..... +-+...|+..-.. +...|++++|+.+++...+..++ +...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence 378999999887532 3344455543333 23344578999999998876544 6777777777776665
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010807 270 --MIKEMESVLSRMKSNQCKPDIITFN-LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEY 346 (500)
Q Consensus 270 --~~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 346 (500)
++++|...+.++.+.... +...+. .....+...+.++.|+..++.++...+. +...|+.+...+...|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 589999999999886443 555544 4557778889999999999999887554 78899999999999999888765
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 010807 347 VFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV 426 (500)
Q Consensus 347 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 426 (500)
.+...... .|+ ...+...+...+..+++...+........ ++...+..+...+...|++.+|...+.+.....
T Consensus 200 ~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 272 (334)
T d1dcea1 200 QGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN- 272 (334)
T ss_dssp CCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred HHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence 55443331 111 12233344556677778888888777643 455667777888888899999999999888653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 010807 427 TPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFF-LEA 471 (500)
Q Consensus 427 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~l 471 (500)
+-+..++..+...+...|++++|.+++++..+. .|+...| ..+
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L 316 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDL 316 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHH
Confidence 224567888888999999999999999999874 5655444 444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=4.8e-07 Score=80.28 Aligned_cols=178 Identities=7% Similarity=-0.096 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCC
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES----ILAP-DIYTYNGVMDAYGKNGM 270 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~ 270 (500)
..+++++|.++|.+. ...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|+
T Consensus 29 ~~~~~~~Aa~~y~~a----------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~ 92 (290)
T d1qqea_ 29 DSYKFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN 92 (290)
T ss_dssp SHHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHH----------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC
Confidence 566788888776664 44678888889988888877542 1111 12466777777777777
Q ss_pred HHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcC
Q 010807 271 IKEMESVLSRMKSN----QCK-PDIITFNLLIDSYG-KRQAFDKMEQVFKSLMHS----KEKP-TLPTFNSMIINYGKAR 339 (500)
Q Consensus 271 ~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~ 339 (500)
+++|.+.+++..+. |.. ....++..+...|. ..|++++|++.|++..+. +..+ ...++..+...+...|
T Consensus 93 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g 172 (290)
T d1qqea_ 93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC
Confidence 77777777765432 110 11334445555553 347777777777655321 1111 1234555666666666
Q ss_pred CHhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 340 LQGKAEYVFQKMTAMKYTPS------FITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
++++|...++++........ ...+...+..+...|+++.|...+++..+.
T Consensus 173 ~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 66666666666554321111 012233333444556666666666655543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.2e-06 Score=70.47 Aligned_cols=140 Identities=13% Similarity=-0.043 Sum_probs=78.8
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPT 412 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 412 (500)
..+...|++++|.+.|..+ .+|+..+|..+..+|...|++++|++.|++.++.+. -+...|..+..+|.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHH
Confidence 3344555566665555432 234555555566666666666666666666555442 24555666666666666666
Q ss_pred hHHHHHHHHHhCC------------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010807 413 EADLLFENSHNMG------------V--TPD-SSTYKLLYKAYTKANMKELVQKLLKRMEQNGIVPNKRFFLEALETFSS 477 (500)
Q Consensus 413 ~A~~~~~~m~~~~------------~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 477 (500)
+|+..|++..... . .++ ..++..+..++.+.|++++|.+.+++..+....|....+...+....+
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~ 167 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK 167 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence 6666665554321 0 011 244556666777777777777777777766555555555555555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=1.8e-06 Score=70.98 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=74.2
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHH
Q 010807 299 SYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 378 (500)
.+...|+++.|++.|.++ .+++..+|..+..+|...|++++|...|++.++.. +-+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 345556666666666543 33455556666666666666666666666666543 3345566666666666666666
Q ss_pred HHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 010807 379 AREIFDELSKLGK--------------DM-KVSTLNAMLEAYCMNGLPTEADLLFENSHNMG 425 (500)
Q Consensus 379 A~~~~~~~~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 425 (500)
|.+.|++...... +. ...++..+..++.+.|++++|.+.+.......
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 6666665543210 00 13455667778888888888888888877654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=0.00017 Score=62.24 Aligned_cols=226 Identities=13% Similarity=0.011 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010807 220 IVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGK----NGMIKEMESVLSRMKSNQCKPDIITFNL 295 (500)
Q Consensus 220 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 295 (500)
+..+..|...+.+.+++++|++.|++..+.| +...+..|-..|.. ..+...|...+......+. ......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhc
Confidence 3445555566666677777777777766654 44455555555554 4566667777666665542 222233
Q ss_pred HHHHHh----ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 296 LIDSYG----KRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----ARLQGKAEYVFQKMTAMKYTPSFITYECII 367 (500)
Q Consensus 296 li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 367 (500)
+...+. ...+.+.|...++.....|.. .....+...+.. ......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 322222 245666677777666655432 222222222222 33445555555555543 3455555566
Q ss_pred HHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 368 TMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 368 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
..|.. ..+...+...++...+.| +......+...|.. ..++++|+.+|.+..+.| ++..+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 65553 455666667776666655 45555556555554 456777777777777665 45555666666
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCC
Q 010807 440 YTK----ANMKELVQKLLKRMEQNGIVP 463 (500)
Q Consensus 440 ~~~----~g~~~~a~~~~~~m~~~g~~p 463 (500)
|.+ ..+.++|.++|++..+.|..+
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 654 336777777777777766443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=2.1e-06 Score=75.97 Aligned_cols=208 Identities=8% Similarity=-0.037 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHHH
Q 010807 235 NVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSN----QCKP-DIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 235 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a 309 (500)
++++|..+|.+. ...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|
T Consensus 32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 467777666554 56788899999999999987653 2121 245788999999999999999
Q ss_pred HHHHHHHHhC----CC-CCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCHHH
Q 010807 310 EQVFKSLMHS----KE-KPTLPTFNSMIINYGK-ARLQGKAEYVFQKMTAM----KYTP-SFITYECIITMYGYCDNVSR 378 (500)
Q Consensus 310 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~ 378 (500)
++.+++..+. +. .....++..+...|.. .|++++|...++...+. +..+ -..++..+...+...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 9999876542 11 1123456667777754 69999999999887542 2111 14567888999999999999
Q ss_pred HHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHH--cCCH
Q 010807 379 AREIFDELSKLGKDMK------VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVT-PD---SSTYKLLYKAYTK--ANMK 446 (500)
Q Consensus 379 A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~---~~~~~~li~~~~~--~g~~ 446 (500)
|..+|+++........ ...+...+.++...|+++.|...+++..+.... ++ ......++.++.. .+.+
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~ 256 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999887432211 123445566778899999999999998875311 12 2345566666654 2457
Q ss_pred HHHHHHHHHHH
Q 010807 447 ELVQKLLKRME 457 (500)
Q Consensus 447 ~~a~~~~~~m~ 457 (500)
++|+..|+++.
T Consensus 257 ~eai~~y~~~~ 267 (290)
T d1qqea_ 257 SEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHHHHHh
Confidence 78887776443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=9e-06 Score=60.58 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=45.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCH
Q 010807 227 LRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAF 306 (500)
Q Consensus 227 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 306 (500)
...+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..+.+..+.+.. +...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 33445555555555555555544332 4444555555555555555555555555544322 444455555555555555
Q ss_pred HHHHHHHHHHHh
Q 010807 307 DKMEQVFKSLMH 318 (500)
Q Consensus 307 ~~a~~~~~~~~~ 318 (500)
++|+..|++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=7.7e-06 Score=64.87 Aligned_cols=92 Identities=14% Similarity=-0.003 Sum_probs=64.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 010807 331 MIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL 410 (500)
Q Consensus 331 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 410 (500)
....|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+... -+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCC
Confidence 3456667777777777777777654 34566777777777777777777777777776543 356677777777777777
Q ss_pred hhhHHHHHHHHHhC
Q 010807 411 PTEADLLFENSHNM 424 (500)
Q Consensus 411 ~~~A~~~~~~m~~~ 424 (500)
+++|...+++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777777665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=6.8e-06 Score=65.17 Aligned_cols=106 Identities=8% Similarity=0.039 Sum_probs=77.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 010807 295 LLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCD 374 (500)
Q Consensus 295 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 374 (500)
.....|.+.|++++|+..|++.++..+. +...|..+..+|...|++++|...|+..++.. +-+...|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 3455677788888888888888776433 67778888888888888888888888887754 445677888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLE 403 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 403 (500)
++++|...+++.....+ -+...+..+..
T Consensus 93 ~~~eA~~~~~~a~~~~p-~~~~~~~~l~~ 120 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKP-HDKDAKMKYQE 120 (159)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 88888888888877642 24555544433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=8.9e-06 Score=60.62 Aligned_cols=87 Identities=11% Similarity=-0.035 Sum_probs=37.1
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhH
Q 010807 335 YGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEA 414 (500)
Q Consensus 335 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 414 (500)
+.+.|++++|...|.+.++.. +-+...|..+..+|...|++++|+..+....+.+. .+...|..+..++...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHHHH
Confidence 344444444444444444332 22333444444444444444444444444444322 2344444444444444444444
Q ss_pred HHHHHHHHh
Q 010807 415 DLLFENSHN 423 (500)
Q Consensus 415 ~~~~~~m~~ 423 (500)
+..|++.++
T Consensus 91 ~~~~~~a~~ 99 (117)
T d1elwa_ 91 KRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.37 E-value=0.00043 Score=59.52 Aligned_cols=211 Identities=14% Similarity=0.033 Sum_probs=137.4
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh----h
Q 010807 196 KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQ----ARNVDQVNALFKELHESILAPDIYTYNGVMDAYG----K 267 (500)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~ 267 (500)
..+++++|+++|++..+. -+...+..|...|.. ..+...|...+....+.+ +......+...+. .
T Consensus 14 ~~~d~~~A~~~~~kAa~~----g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~~~~~~~~~ 86 (265)
T d1ouva_ 14 KEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV 86 (265)
T ss_dssp HTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred HCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccccccccccc
Confidence 445677777777777652 255555556666655 456777777777776654 3333333333333 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010807 268 NGMIKEMESVLSRMKSNQCKPDIITFNLLIDSY----GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGK----AR 339 (500)
Q Consensus 268 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 339 (500)
..+.+.|...++...+.|.. .....+...+ ........+...+...... .+...+..+...|.. ..
T Consensus 87 ~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~ 160 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPK 160 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCC
T ss_pred chhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCccc
Confidence 45677888888887776543 2222222222 2345566777777766543 356667777777765 45
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCh
Q 010807 340 LQGKAEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLP 411 (500)
Q Consensus 340 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 411 (500)
+...+...++...+.| +......+...|.. ..+.++|...|....+.| ++..+..|...|.+ ..+.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 5667777777777754 55666666666654 578999999999998887 57777778888775 3478
Q ss_pred hhHHHHHHHHHhCC
Q 010807 412 TEADLLFENSHNMG 425 (500)
Q Consensus 412 ~~A~~~~~~m~~~~ 425 (500)
++|.+.|++..+.|
T Consensus 235 ~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 235 KQAIENFKKGCKLG 248 (265)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc
Confidence 89999999988776
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=4.1e-06 Score=69.32 Aligned_cols=99 Identities=10% Similarity=-0.059 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010807 323 PTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAML 402 (500)
Q Consensus 323 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li 402 (500)
|+...+......|.+.|++++|+..|...++.. +-+...|..+..+|.+.|++++|+..|+...+..+ -+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence 667777888899999999999999999988864 55688899999999999999999999999988653 3678899999
Q ss_pred HHHHhcCChhhHHHHHHHHHh
Q 010807 403 EAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 403 ~~~~~~g~~~~A~~~~~~m~~ 423 (500)
.+|...|++++|+..|+++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998775
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=6.6e-06 Score=68.04 Aligned_cols=98 Identities=8% Similarity=-0.076 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010807 253 PDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMI 332 (500)
Q Consensus 253 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 332 (500)
|+...+......+.+.|++++|+..|.+..+.... +...|..+..+|.+.|++++|+..|+..++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 33444444445555555555555555554444322 4445555555555555555555555555543211 344555555
Q ss_pred HHHHhcCCHhHHHHHHHHHH
Q 010807 333 INYGKARLQGKAEYVFQKMT 352 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~ 352 (500)
.+|...|++++|...|+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=8.6e-06 Score=60.13 Aligned_cols=89 Identities=10% Similarity=-0.002 Sum_probs=57.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANM 445 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 445 (500)
+...+.+.|++++|...|++..+..+. +...|..+..++.+.|++++|+..|++.++.. +.+...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 444556667777777777766665432 56666677777777777777777777666653 3346666666667777777
Q ss_pred HHHHHHHHHHH
Q 010807 446 KELVQKLLKRM 456 (500)
Q Consensus 446 ~~~a~~~~~~m 456 (500)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=7.2e-06 Score=61.45 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=44.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 010807 366 IITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGL---PTEADLLFENSHNMGVTPD-SSTYKLLYKAYT 441 (500)
Q Consensus 366 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 441 (500)
+++.+...+++++|.+.|+.....++ .++.++..+..++.+.++ +++|+.+|+++...+..|+ ..++..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 44444455555555555555555432 244555555555544332 2345555555544322222 124444555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 010807 442 KANMKELVQKLLKRMEQ 458 (500)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (500)
+.|++++|.++|+++.+
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 55555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=0.0012 Score=58.30 Aligned_cols=148 Identities=9% Similarity=0.065 Sum_probs=92.2
Q ss_pred hccCcchHHHHHHHHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 010807 105 KVVRSEHCFLLFEELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYN 184 (500)
Q Consensus 105 ~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 184 (500)
...+.-+...+.+.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|.
T Consensus 10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k 73 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 73 (336)
T ss_dssp TCC----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHH
Confidence 334444556677888888999999999876533 788889999999999998887654 3667888
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 185 ALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDA 264 (500)
Q Consensus 185 ~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 264 (500)
.+...+..... ...+ .+.. .....+......++..|-..|.+++...+++..... -..+...++.++..
T Consensus 74 ~~~~~l~~~~e----~~la-----~i~~-~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~l 142 (336)
T d1b89a_ 74 EVCFACVDGKE----FRLA-----QMCG-LHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 142 (336)
T ss_dssp HHHHHHHHTTC----HHHH-----HHTT-TTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHH
T ss_pred HHHHHHHhCcH----HHHH-----HHHH-HHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHH
Confidence 88888874321 2211 2222 122446666678999999999999999999987643 34577788889998
Q ss_pred HhhcCCHHHHHHHHHH
Q 010807 265 YGKNGMIKEMESVLSR 280 (500)
Q Consensus 265 ~~~~g~~~~a~~~~~~ 280 (500)
|++.+ .++..+.+..
T Consensus 143 yak~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 143 YSKFK-PQKMREHLEL 157 (336)
T ss_dssp HHTTC-HHHHHHHHHH
T ss_pred HHHhC-hHHHHHHHHh
Confidence 88865 3444444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=1.6e-05 Score=58.67 Aligned_cols=89 Identities=10% Similarity=-0.019 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 010807 226 LLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQA 305 (500)
Q Consensus 226 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 305 (500)
+...+.+.|++++|+..|++....... +...|..+..++.+.|++++|+..|++..+.... +...+..+..+|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 344455566666666666665554333 4555555556666666666666666655554322 45555555555666666
Q ss_pred HHHHHHHHHHH
Q 010807 306 FDKMEQVFKSL 316 (500)
Q Consensus 306 ~~~a~~~~~~~ 316 (500)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.4e-05 Score=59.77 Aligned_cols=95 Identities=12% Similarity=-0.099 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 010807 329 NSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDN---VSRAREIFDELSKLGKDMK-VSTLNAMLEA 404 (500)
Q Consensus 329 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~~~~~~~~~~-~~~~~~li~~ 404 (500)
..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345566666777777777777777654 4456666667777665443 3457777777766543332 2356667777
Q ss_pred HHhcCChhhHHHHHHHHHhC
Q 010807 405 YCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 405 ~~~~g~~~~A~~~~~~m~~~ 424 (500)
|.+.|++++|++.|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 77777777777777777764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=4.3e-06 Score=79.98 Aligned_cols=133 Identities=11% Similarity=-0.057 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010807 234 RNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVF 313 (500)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 313 (500)
+.++.++..+....+.. .++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|+..|
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 44444444443332221 1234455566666667777777766665544321 1245566677777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 314 KSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
++..+..+ .+...|+.+...+...|+..+|...|.+..... +|-..++..|...+.+
T Consensus 176 ~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 176 RHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 77776532 255677777777777777777777777777654 4566667776666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=0.00019 Score=57.11 Aligned_cols=78 Identities=13% Similarity=-0.093 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
.+|+.+..+|.+.|++++|+..++..++.++ -++..|..+..+|...|++++|+..|++..+.. +-|......+....
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3567778888888999999999988888653 378888888888999999999999998888753 22455554444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00015 Score=57.76 Aligned_cols=82 Identities=9% Similarity=-0.083 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
.+|+.+..+|.+.|++++|...++..+... +.+..++..+..+|...|++++|...|+...+..+. +..+...+-.+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 356778888888999999999998888864 446888888888999999999999999988886532 566665555554
Q ss_pred HhcC
Q 010807 406 CMNG 409 (500)
Q Consensus 406 ~~~g 409 (500)
.+.+
T Consensus 141 ~~~~ 144 (170)
T d1p5qa1 141 QRIR 144 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=0.0045 Score=54.47 Aligned_cols=269 Identities=11% Similarity=0.118 Sum_probs=158.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCHHH
Q 010807 143 ADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNIVT 222 (500)
Q Consensus 143 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (500)
||..--..+...|.+.|.++.|..+|..+.. |..++..+. ..+++..|.+.+.+.. +..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v----~l~~~~~avd~~~k~~-------~~~~ 71 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLV----HLGEYQAAVDGARKAN-------STRT 71 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHH----TTTCHHHHHHHHHHHT-------CHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHH----hhccHHHHHHHHHHcC-------CHHH
Confidence 4555667788889999999999999987643 556677777 4555888888877653 5678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
|..+...|.+......+ .+.......+......++..|-..|.+++...+++...... ..+...++-++..|++
T Consensus 72 ~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHH
Confidence 99999999888776553 22233344567777889999999999999999999876542 4477788999999988
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLP----------TFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY 372 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 372 (500)
.+ .++..+.++.... ..+.. .|.-++-.|.+.|+++.|..+. .+. .++..-...++..+.+
T Consensus 146 ~~-~~kl~e~l~~~s~---~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k 216 (336)
T d1b89a_ 146 FK-PQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITK 216 (336)
T ss_dssp TC-HHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHH
T ss_pred hC-hHHHHHHHHhccc---cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHc
Confidence 65 3444444443311 11211 2344455555555555554432 221 2222223445555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 373 CDNVSRAREIFDELSKLGKDMKVSTLN-------------AMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 373 ~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
..+.+...++.....+.. | ...+ .++..+-+.++..-...+++.....+ +....+.|...
T Consensus 217 ~~N~e~~~~~i~~yL~~~--p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~l 289 (336)
T d1b89a_ 217 VANVELYYRAIQFYLEFK--P--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNL 289 (336)
T ss_dssp CSSTHHHHHHHHHHHHHC--G--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHcC--H--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHH
Confidence 666666655555544421 2 2223 34444555566666666666655544 45688888889
Q ss_pred HHHcCCHHHHHHHH
Q 010807 440 YTKANMKELVQKLL 453 (500)
Q Consensus 440 ~~~~g~~~~a~~~~ 453 (500)
|...++++.-.+..
T Consensus 290 yie~~d~~~l~~~i 303 (336)
T d1b89a_ 290 FITEEDYQALRTSI 303 (336)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HhCcchhHHHHHHH
Confidence 99999876544443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00011 Score=55.32 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=20.8
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010807 333 INYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDEL 386 (500)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~ 386 (500)
..+...|++++|...|.+.++.+ +.+...+..+..+|.+.|++++|+..++++
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 33334444444444444433322 122333444444444444444444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.82 E-value=0.0002 Score=57.40 Aligned_cols=123 Identities=14% Similarity=0.021 Sum_probs=86.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 010807 330 SMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG 409 (500)
Q Consensus 330 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 409 (500)
.........|++++|...|......- +... +......+-+...-..+... ....+..+..++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 34456778899999999998888731 1110 00001101111111222221 2466788899999999
Q ss_pred ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 010807 410 LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQ-----NGIVPNKRF 467 (500)
Q Consensus 410 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~ 467 (500)
++++|+..+++++... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999998875 55888999999999999999999999999854 599999865
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00015 Score=54.67 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC-----HHHHHH
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGV-TPD-----SSTYKL 435 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-----~~~~~~ 435 (500)
.+-.+...+...|++++|+..|.+.++.++ .+...|..+..+|.+.|++++|+..++++++... .++ ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 345678889999999999999999999764 4789999999999999999999999999876320 111 346777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 436 LYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 436 li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
+...+...+++++|++.|++.....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 8888899999999999999887643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.80 E-value=0.00033 Score=54.58 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 362 TYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 362 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
+|+.+..+|.+.|++++|++.++...+.+ +.+..+|..+..+|...|++++|+..|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666666666666666666666554 235566666666666666666666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=6.4e-06 Score=78.74 Aligned_cols=228 Identities=7% Similarity=-0.058 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 010807 163 LAMWLFSEMRNSGCRPDP-SVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPNI-VTYNILLRACAQARNVDQVN 240 (500)
Q Consensus 163 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~ 240 (500)
+|.+.|++..+. +|+. ..+..+-..+. ..+++++| |+++... .|+. ..++..-. +. ...+..+.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~----~~~~l~ea---ye~~i~~---dp~~a~~~~~e~~-Lw-~~~y~~~i 69 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWT----SRQALQDL---YQKMLVT---DLEYALDKKVEQD-LW-NHAFKNQI 69 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHH----HHHHHHHH---HHHHHHH---CHHHHHHHTHHHH-HH-HHHTHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHH----HHchHHHH---HHHHHHc---ChhhHHHHhHHHH-HH-HHHHHHHH
Confidence 677888887763 5653 34555555555 67777765 6666532 2321 12221111 11 11245567
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH--HhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010807 241 ALFKELHESILAPDIYTYNGVMDA--YGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKMEQVFKSLMH 318 (500)
Q Consensus 241 ~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 318 (500)
+.++...+....++..-....+.. ....+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+.....
T Consensus 70 e~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 70 TTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred HHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 777776665444443322222222 223445555555554443332 23556677888888899999999988877654
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 010807 319 SKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTL 398 (500)
Q Consensus 319 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 398 (500)
.. ...++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..... +|...++
T Consensus 149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 21 23567788899999999999999999998864 4457899999999999999999999999998875 4578888
Q ss_pred HHHHHHHHhcCC
Q 010807 399 NAMLEAYCMNGL 410 (500)
Q Consensus 399 ~~li~~~~~~g~ 410 (500)
..|...|.+...
T Consensus 224 ~nL~~~~~~~~~ 235 (497)
T d1ya0a1 224 TNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhh
Confidence 888888766544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.76 E-value=0.00071 Score=52.54 Aligned_cols=111 Identities=8% Similarity=0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 010807 223 YNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGK 302 (500)
Q Consensus 223 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 302 (500)
+......+.+.|++.+|+..|.+..+.-.... .............+ ...+|+.+..+|.+
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~~~~-------~~~~~~Nla~~~~~ 79 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKKKNI-------EISCNLNLATCYNK 79 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhhhhH-------HHHHHhhHHHHHHH
Confidence 34445567788899999988888765311100 00000000000000 22456667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 010807 303 RQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAM 354 (500)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 354 (500)
.|++++|++.++..++..+ .+..+|..+..++...|++++|...|+...+.
T Consensus 80 l~~~~~Al~~~~~al~~~p-~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 80 NKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhccccccc-hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777766532 36677777777777777777777777777764
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.68 E-value=0.00032 Score=55.68 Aligned_cols=79 Identities=10% Similarity=-0.068 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010807 360 FITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKA 439 (500)
Q Consensus 360 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 439 (500)
...|..+..++.+.|++++|+..+..+++... .+...|..+..+|...|++++|+..|++.++.. +.+......+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 33455555666666666666666666666542 355666666666666666666666666666542 2234444444443
Q ss_pred H
Q 010807 440 Y 440 (500)
Q Consensus 440 ~ 440 (500)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.67 E-value=0.00058 Score=54.06 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010807 361 ITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAY 440 (500)
Q Consensus 361 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 440 (500)
.+|+.+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|+..|.++.... +.+......+-...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 356667778888899999998888888865 3478888888888889999999999998888764 33444444444443
Q ss_pred HHcCCH-HHHHHHHHHHH
Q 010807 441 TKANMK-ELVQKLLKRME 457 (500)
Q Consensus 441 ~~~g~~-~~a~~~~~~m~ 457 (500)
.+.+.. +...+.+..|.
T Consensus 143 ~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 333322 23344444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.65 E-value=0.00044 Score=54.84 Aligned_cols=64 Identities=6% Similarity=-0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 395 VSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 395 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..++.+.|++++|+..|++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4456666677777777777777777777654 345667777777777777777777777777654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.60 E-value=0.0013 Score=52.01 Aligned_cols=84 Identities=11% Similarity=-0.004 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010807 326 PTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAY 405 (500)
Q Consensus 326 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 405 (500)
.+|+.+..+|.+.|++++|+..++..+... +.+...|..+..+|...|++++|...|..+.+..+ .+..+...+-.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 356667788888899999988888888754 55678888888888889999999999988888653 3566666555554
Q ss_pred HhcCCh
Q 010807 406 CMNGLP 411 (500)
Q Consensus 406 ~~~g~~ 411 (500)
...+..
T Consensus 143 ~~~~~~ 148 (168)
T d1kt1a1 143 KKAKEH 148 (168)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.46 E-value=0.0014 Score=52.24 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=27.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010807 293 FNLLIDSYGKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKM 351 (500)
Q Consensus 293 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 351 (500)
+..+..++.+.|++++|+..++.++...+ -+...|..++.+|...|+.++|.+.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444444555555555555555444322 24444555555555555555555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.38 E-value=0.00079 Score=57.52 Aligned_cols=123 Identities=15% Similarity=0.022 Sum_probs=84.1
Q ss_pred HHcccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCcch
Q 010807 118 ELGKSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKKGQTRLAMWLFSEMRNSGCRPDPS-VYNALITAHLHTRDK 196 (500)
Q Consensus 118 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~ 196 (500)
..-+.|++++|+..|+...+.. +.|...+..+...++..|++++|...|+...+. .|+.. .+..+...+. .
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~----a 76 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK----A 76 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH----H
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH----h
Confidence 4456799999999999999874 778999999999999999999999999999885 45543 3333333332 2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 010807 197 AKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHES 249 (500)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 249 (500)
.+..+++...+..... .+-+++...+......+...|+.++|.+.++++.+.
T Consensus 77 ~~~~~~a~~~~~~~~~-~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 77 AQARKDFAQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHTTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhhhhhc-ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3333333222211111 111233444555667788889999999999888764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.37 E-value=0.00049 Score=52.94 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 010807 375 NVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNG-----------LPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKA 443 (500)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 443 (500)
.+++|+..|++..+.++ -+..+|..+..+|...| .+++|.+.|++.++. .|+...|..-+..+
T Consensus 56 ~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~--- 129 (145)
T d1zu2a1 56 MIQEAITKFEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT--- 129 (145)
T ss_dssp HHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhcc-hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH---
Confidence 34566666666666543 24566666666665543 356677777777764 45555554443333
Q ss_pred CCHHHHHHHHHHHHHCCC
Q 010807 444 NMKELVQKLLKRMEQNGI 461 (500)
Q Consensus 444 g~~~~a~~~~~~m~~~g~ 461 (500)
..|.+++.+..+.|+
T Consensus 130 ---~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 ---AKAPQLHAEAYKQGL 144 (145)
T ss_dssp ---HTHHHHHHHHHHSSS
T ss_pred ---HHHHHHHHHHHHHhc
Confidence 345566666655553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.33 E-value=0.0011 Score=50.78 Aligned_cols=118 Identities=14% Similarity=-0.008 Sum_probs=68.2
Q ss_pred ccCCHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010807 121 KSDKWLQCLEVFRWMQKQRWYIADTGIYSKLIAVMGKK----------GQTRLAMWLFSEMRNSGCRPDPSVYNALITAH 190 (500)
Q Consensus 121 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 190 (500)
+.+.|++|++.|+...+.. |.+..++..+..++... +.+++|+..|++..+.. +.+...|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 3466889999999998874 67788888888887754 34466777777777643 23455666666555
Q ss_pred HcCcc-------hHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010807 191 LHTRD-------KAKALAKALGYFQKMKGMERCKPNIVTYNILLRACAQARNVDQVNALFKELHESI 250 (500)
Q Consensus 191 ~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 250 (500)
...+. ..+.+++|.+.|++.... .|+...|...+..+ ..|.+++.+..+.|
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l---~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc---CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 42110 123355566666665542 44444443333332 23445555544443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.31 E-value=0.00026 Score=60.64 Aligned_cols=121 Identities=10% Similarity=0.001 Sum_probs=63.1
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 010807 337 KARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADL 416 (500)
Q Consensus 337 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 416 (500)
+.|++++|...+++.++.. +-|...+..+...++..|++++|...++...+.... +...+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHHH
Confidence 4566677777776666653 445666666777777777777777777766664321 23444444433333222222211
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 010807 417 LFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQN 459 (500)
Q Consensus 417 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 459 (500)
-.......+-.++...+......+...|+.++|...+++..+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1111111111112233333445566777777777777776653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.16 E-value=0.0038 Score=48.37 Aligned_cols=92 Identities=10% Similarity=-0.089 Sum_probs=60.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHHCCCC-C----------CHHHHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCCCC-
Q 010807 367 ITMYGYCDNVSRAREIFDELSKLGKD-M----------KVSTLNAMLEAYCMNGLPTEADLLFENSHNM-----GVTPD- 429 (500)
Q Consensus 367 i~~~~~~~~~~~A~~~~~~~~~~~~~-~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~- 429 (500)
...+...|++++|+..|++.++.... | ....|+.+..+|.+.|++++|...+++.+.. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445567777777777766652111 1 1356777888888888888888887776542 11222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010807 430 ----SSTYKLLYKAYTKANMKELVQKLLKRMEQ 458 (500)
Q Consensus 430 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 458 (500)
...+..+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566778888999999999999888764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.95 E-value=0.0092 Score=46.04 Aligned_cols=90 Identities=12% Similarity=-0.029 Sum_probs=57.5
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCCCC---
Q 010807 334 NYGKARLQGKAEYVFQKMTAMKY-TP----------SFITYECIITMYGYCDNVSRAREIFDELSKL-----GKDMK--- 394 (500)
Q Consensus 334 ~~~~~~~~~~a~~~~~~m~~~~~-~~----------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~--- 394 (500)
.+...|++++|+..|++.++... .| ....|+.+..+|...|++++|...+++..+. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34455666666666666554210 01 1345677777788888888887777766541 11111
Q ss_pred --HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010807 395 --VSTLNAMLEAYCMNGLPTEADLLFENSHN 423 (500)
Q Consensus 395 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 423 (500)
...++.+..+|...|++++|+..|++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788899999999999999988664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.012 Score=40.90 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=30.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 010807 364 ECIITMYGYCDNVSRAREIFDELSKLG-----KDMK-VSTLNAMLEAYCMNGLPTEADLLFENSHNM 424 (500)
Q Consensus 364 ~~li~~~~~~~~~~~A~~~~~~~~~~~-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 424 (500)
-.+...+.+.|++++|...|++..+.. ..++ ..+++.+..+|.+.|++++|+..++++++.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 344455555555555555555444310 0111 344555555555555555555555555554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.45 E-value=0.078 Score=39.19 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 010807 374 DNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTK----ANM 445 (500)
Q Consensus 374 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 445 (500)
.+.++|.+.+++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.+ ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555544 34444444444433 234555555555555544 23334444444433 235
Q ss_pred HHHHHHHHHHHHHCC
Q 010807 446 KELVQKLLKRMEQNG 460 (500)
Q Consensus 446 ~~~a~~~~~~m~~~g 460 (500)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 555666655555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.013 Score=40.65 Aligned_cols=63 Identities=6% Similarity=-0.016 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESI-----LAPD-IYTYNGVMDAYGKNGMIKEMESVLSRMKSN 284 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 284 (500)
.+-.+...+.+.|++++|+..|++..+.. ..++ ..++..+..++.+.|++++|++.++++.+.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34445556666666666666666554321 1111 234455555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.32 E-value=0.069 Score=39.49 Aligned_cols=81 Identities=12% Similarity=0.041 Sum_probs=44.1
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 010807 339 RLQGKAEYVFQKMTAMKYTPSFITYECIITMYGY----CDNVSRAREIFDELSKLGKDMKVSTLNAMLEAYCM----NGL 410 (500)
Q Consensus 339 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 410 (500)
.+.++|..++++..+.| +......|...|.. ..+.++|.++|+...+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34455555555555544 23333334444432 345666777777666665 34555555555554 345
Q ss_pred hhhHHHHHHHHHhCC
Q 010807 411 PTEADLLFENSHNMG 425 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~ 425 (500)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666777777666655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.10 E-value=0.34 Score=34.46 Aligned_cols=65 Identities=12% Similarity=0.091 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCC
Q 010807 222 TYNILLRACAQARNVDQVNALFKELHESILAPDIYTYNGVMDAYGKNGMIKEMESVLSRMKSNQCK 287 (500)
Q Consensus 222 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 287 (500)
..+..++.....|.-+.-.++++++.+. -+|+....-.+..+|-+.|...++-+++.+.-+.|.+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 3444455555555555555555554442 2345555555555566666666666655555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.52 E-value=0.5 Score=33.60 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=90.4
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010807 301 GKRQAFDKMEQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAR 380 (500)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 380 (500)
.-.|..++..+++.+.... .+..-||.+|--....-+-+....+++.+-+. .| ...++++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 3357777777777776553 24445555555555555555444444443221 11 12345555444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 010807 381 EIFDELSKLGKDMKVSTLNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRMEQNG 460 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 460 (500)
..+-.+- .+...++..+..+.++|+-+.-.++++.+.+.+ +|++...-.+..||.+-|...++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 4443322 135566777888888898888888888877755 7888888888999999999999999999988888
Q ss_pred CC
Q 010807 461 IV 462 (500)
Q Consensus 461 ~~ 462 (500)
+.
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.88 E-value=1 Score=32.04 Aligned_cols=70 Identities=6% Similarity=-0.018 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 010807 178 PDPSVYNALITAHLHTRDKAKALAKALGYFQKMKGMERCKPN-IVTYNILLRACAQARNVDQVNALFKELHESI 250 (500)
Q Consensus 178 p~~~~~~~li~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 250 (500)
|+..+--....+++++. ...++++++.+|+++.... +.+ ...+..|.-+|.+.|++++|.+.++.+++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~-~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKST-DVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 44445444555566554 5677888888888876421 223 2455666777888888888888888887753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.27 E-value=1.3 Score=31.49 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 432 TYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 432 ~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.+..|.-+|.+.|++++|.++++.+.
T Consensus 75 ~lY~Lav~yyklgdy~~A~~~~~~~L 100 (124)
T d2pqrb1 75 CLYYLTIGCYKLGEYSMAKRYVDTLF 100 (124)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33444444555555555555555444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.61 E-value=9.2 Score=34.09 Aligned_cols=204 Identities=8% Similarity=-0.082 Sum_probs=121.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHhhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010807 234 RNVDQVNALFKELHESILAPDIYTYNG----VMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNLLIDSYGKRQAFDKM 309 (500)
Q Consensus 234 g~~~~a~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 309 (500)
.+.+.+..++......... +...... +.......+..+.+...+......+. +.....-.+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 5677888888777654322 2222222 22233345667788888877766643 333334445555667888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 010807 310 EQVFKSLMHSKEKPTLPTFNSMIINYGKARLQGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSKL 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 389 (500)
...+..|... ......-..-+..++...|+.+.|...|...-. .++ -|..|...-... .+.-.. ...
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~~Lg~-~~~~~~------~~~ 371 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQRIGE-EYELKI------DKA 371 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHHHTTC-CCCCCC------CCC
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHHHcCC-CCCCCc------CCC
Confidence 8888877543 222445556677888889999999999888764 233 343332221111 000000 000
Q ss_pred CCCCC-HHH---HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010807 390 GKDMK-VST---LNAMLEAYCMNGLPTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRM 456 (500)
Q Consensus 390 ~~~~~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 456 (500)
...+. ... --.-+..+...|....|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 372 ~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00000 000 112355677889999999999888754 35667777888888999999999877655
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.77 E-value=3.1 Score=27.83 Aligned_cols=48 Identities=6% Similarity=0.088 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010807 341 QGKAEYVFQKMTAMKYTPSFITYECIITMYGYCDNVSRAREIFDELSK 388 (500)
Q Consensus 341 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 388 (500)
.-++..-++.+....+.|++....+.+.+|-+.+|+..|.++|+.++.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555555566666666666666666666666666665554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.56 E-value=6.1 Score=26.38 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010807 411 PTEADLLFENSHNMGVTPDSSTYKLLYKAYTKANMKELVQKLLKRME 457 (500)
Q Consensus 411 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 457 (500)
.-++.+-++.+....+.|++.....-++||.+.+++..|.++|+-..
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555555555555666666666666666666666666655554
|