Citrus Sinensis ID: 010812

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV
cccccEEEEcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccEEcccccccccccEEEEEEEEEEEEEccccccEEccccccEEEEccccccccHHHHHHHccccccccccccccccccccEEEEEEEEcccccccEEEccccEEccccccccccEEEEccccccccccccccccccccccccc
ccccEEEEEccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHcccEEEEccccccccHHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHcccEEEEEEEEcccEEEEccccEEEEccccccccccHHHHHHHHHcccccccccccccccccEEEEEEEEEEEccccEEEEEEEEEEccccccEEEEEEEEccccHHHHHHHccccccccEEEEcc
msdsklfvfgsfteeetrswlqsqssgsvkkpvssrraekpaedkelqfgslnfgtesslvgttdepngksvvdgpvvfqpstllkkddkvksvgasndhdlgavgcpkenghiknstngpalsngvnhlkadgidfssfhqnagghanpspiskfhvlcdgnidgrdqnaaacnssisgskevpmkainepvksvkdllprglinsgnlCFLNATLQALMSCSPFVQLLQELRtrdipkagyptLTAFVGfvsdfdtpsggsskkknisvldigrpfspsMFEAVLKNftpdvpnsisgrprqEDAQEFLSFIMDQMHDELLKLqgestsingaNTALVSLaeedewetvgpknksavtrtqsflpsalsdifGGQLKSVVKAQgnkasatvqPFLLLHLDIYSEAVHTIEDALRLfsapenlegyrtsstgnagvvtaKKSVKIQTLSKILILHLMRfsygsqgstklhksvrfplqlvlgrdllvtpsaevlQFLNV
MSDSKLFVFGsfteeetrswlqsqssgsvkkpvssrraekpaedkelqfgslnfGTESSLVGttdepngksvvdgpvvfqpstllkkddkvKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSsisgskevpmkaINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSdfdtpsggsskkknisvLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGyrtsstgnagvvtakksvkIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLgrdllvtpsaevlqflnv
MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV
*******V*************************************************************************************************************************************************SKFHVLCDGNI******************************SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDF**************VLDIG******MFEAVLK*********************FLSFIMDQMHDELL**************ALV************************FLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQF***
***SKLF*F*********************************************************************************************************************************************************************************************LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG********SVLDIGRPFSPSMFEAVLKNFTPDVPN*I***PRQEDAQEFLSFIMDQMHDELL********************************KSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLV*PSAE**QFLNV
MSDSKLFVFGSFT*******************************KELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFD********KKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAE************SAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV
***SK******F*****************************************************************************************************************************************************************************************DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQ************************VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTNGPALSNGVNHLKADGIDFSSFHQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query500 2.2.26 [Sep-21-2011]
Q9FPS3551 Ubiquitin carboxyl-termin yes no 0.958 0.869 0.542 1e-133
Q7ZXR7805 Ubiquitin carboxyl-termin N/A no 0.582 0.361 0.361 1e-51
Q2NL57791 Ubiquitin carboxyl-termin N/A no 0.58 0.366 0.360 2e-51
Q6DIJ4805 Ubiquitin carboxyl-termin yes no 0.582 0.361 0.358 7e-51
Q5ZJN4785 Ubiquitin carboxyl-termin yes no 0.582 0.370 0.363 7e-50
Q3KR59794 Ubiquitin carboxyl-termin yes no 0.564 0.355 0.376 8e-49
A5PJS6800 Ubiquitin carboxyl-termin yes no 0.576 0.36 0.356 2e-47
P52479792 Ubiquitin carboxyl-termin yes no 0.576 0.363 0.368 3e-47
Q14694798 Ubiquitin carboxyl-termin yes no 0.576 0.360 0.356 2e-46
O94269512 Probable ubiquitin carbox yes no 0.61 0.595 0.307 8e-35
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana GN=UBP24 PE=1 SV=1 Back     alignment and function desciption
 Score =  476 bits (1225), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 277/511 (54%), Positives = 346/511 (67%), Gaps = 32/511 (6%)

Query: 1   MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
           MS+ K+FVFGSFTE ETRS+ +       +KP    +  K      +QFGSLN   E+S 
Sbjct: 1   MSEKKVFVFGSFTEHETRSFFE-------QKPTKDPQNSKDKCVGSIQFGSLNLAAENSS 53

Query: 61  VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
           V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG
Sbjct: 54  VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112

Query: 113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
            IK  S +  +L+NGV  +K D I   +    + G ++P   +  SKF  L     D  D
Sbjct: 113 IIKEISESNKSLNNGV-AVKTDPIGLDNLSM-SDGESDPVYKASSSKFQAL-----DNED 165

Query: 169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
            ++ + + SI   K   +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct: 166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223

Query: 229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
           LLQ+++ +DIPKA  PTL AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+
Sbjct: 224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282

Query: 289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
           NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  
Sbjct: 283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342

Query: 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
           EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct: 343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402

Query: 407 AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG 466
            V  IEDAL LFSA E+LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQG
Sbjct: 403 GVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQG 462

Query: 467 STKLHKSVRFPLQLVLGRDLLVTPSAEVLQF 497
           STKL K V+FPL+L L R  LV+ S E L++
Sbjct: 463 STKLRKGVKFPLELNLNRSHLVSLSNESLRY 493
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|Q7ZXR7|UB10B_XENLA Ubiquitin carboxyl-terminal hydrolase 10-B OS=Xenopus laevis GN=usp10-b PE=2 SV=1 Back     alignment and function description
>sp|Q2NL57|UB10A_XENLA Ubiquitin carboxyl-terminal hydrolase 10-A OS=Xenopus laevis GN=usp10-a PE=2 SV=1 Back     alignment and function description
>sp|Q6DIJ4|UBP10_XENTR Ubiquitin carboxyl-terminal hydrolase 10 OS=Xenopus tropicalis GN=usp10 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZJN4|UBP10_CHICK Ubiquitin carboxyl-terminal hydrolase 10 OS=Gallus gallus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|Q3KR59|UBP10_RAT Ubiquitin carboxyl-terminal hydrolase 10 OS=Rattus norvegicus GN=Usp10 PE=2 SV=1 Back     alignment and function description
>sp|A5PJS6|UBP10_BOVIN Ubiquitin carboxyl-terminal hydrolase 10 OS=Bos taurus GN=USP10 PE=2 SV=1 Back     alignment and function description
>sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10 PE=1 SV=3 Back     alignment and function description
>sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10 PE=1 SV=2 Back     alignment and function description
>sp|O94269|UBP3_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubp3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query500
225449917553 PREDICTED: ubiquitin carboxyl-terminal h 0.962 0.869 0.63 1e-162
255544103 605 conserved hypothetical protein [Ricinus 0.912 0.753 0.587 1e-149
356542965530 PREDICTED: ubiquitin carboxyl-terminal h 0.914 0.862 0.579 1e-144
356531617532 PREDICTED: ubiquitin carboxyl-terminal h 0.918 0.862 0.577 1e-142
357450917532 Ubiquitin carboxyl-terminal hydrolase [M 0.938 0.881 0.568 1e-136
449507688542 PREDICTED: ubiquitin carboxyl-terminal h 0.94 0.867 0.542 1e-135
297798878550 ubiquitin-specific protease 24 [Arabidop 0.958 0.870 0.547 1e-133
18417689551 ubiquitin carboxyl-terminal hydrolase 24 0.958 0.869 0.542 1e-131
222423693551 AT4G30890 [Arabidopsis thaliana] 0.958 0.869 0.542 1e-131
449451721522 PREDICTED: ubiquitin carboxyl-terminal h 0.866 0.829 0.557 1e-127
>gi|225449917|ref|XP_002268974.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Vitis vinifera] gi|296081305|emb|CBI17749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  579 bits (1493), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 315/500 (63%), Positives = 372/500 (74%), Gaps = 19/500 (3%)

Query: 1   MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
           MSDSKL +FGSFTE+ETRS L+          + S  AEKPA  KELQFGS++F T  +L
Sbjct: 4   MSDSKLLLFGSFTEDETRSLLR----------LPSGNAEKPAAKKELQFGSVDFVTGRAL 53

Query: 61  VGTTDEPNGKS-VVDGPVVFQPSTLLKKDDKVKSVGASNDHDLGAVGCPKENGHIKNSTN 119
               +E   ++    GP+ F  S LLKKDD+ KSV   N     A G PKENG + + T+
Sbjct: 54  ASVGNELCRQADSSKGPIDFCSSNLLKKDDETKSVDGVNKLSSEAAGTPKENGGVHDFTH 113

Query: 120 GPALSNGV-NHLKADGIDFSSF--HQNAGGHANPSPISKFHVLCDGNIDGRDQNAAACNS 176
              L NGV N L  D  +  S    QN   H N     + HV+ +     RD N    +S
Sbjct: 114 SSPLGNGVVNELNPDRFNLDSLCLSQNKE-HLNQFQSLESHVVEEECSKERDLNGTIDDS 172

Query: 177 S--ISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR 234
           S  +   KE+ +KA N P  +VK+LLPRGLINSGNLCFLNATLQAL+SC+PF+QLLQELR
Sbjct: 173 STFVPLKKEI-LKAPNGPAPAVKNLLPRGLINSGNLCFLNATLQALLSCTPFIQLLQELR 231

Query: 235 TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDV 294
            RDIPK GYPTLTAF  FVS+FD P+  S KKK+++ ++ GRPFSP+MFE VLKNFTPDV
Sbjct: 232 IRDIPKVGYPTLTAFAEFVSEFDMPTDLSLKKKDLNGVETGRPFSPAMFEGVLKNFTPDV 291

Query: 295 PNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354
           PN ISGRPRQEDAQEFLSF+MDQMHDELLKL+G  +++NG  ++LVS AE+DEWETVGPK
Sbjct: 292 PNKISGRPRQEDAQEFLSFVMDQMHDELLKLEGFFSNLNGGKSSLVSSAEDDEWETVGPK 351

Query: 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDA 414
           NKSAVTRTQSF+PS LS IFGGQL+SVVKA+GNKASATVQPFLLLHLDI  EA++TIEDA
Sbjct: 352 NKSAVTRTQSFVPSELSKIFGGQLRSVVKARGNKASATVQPFLLLHLDILPEAIYTIEDA 411

Query: 415 LRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKS 473
           LRLFSAPE LEGYRTS TG AG+VTA KSVKIQ LS+I+ILHLMRF Y  +QGSTKLHK 
Sbjct: 412 LRLFSAPETLEGYRTSGTGKAGLVTASKSVKIQKLSEIMILHLMRFYYDENQGSTKLHKP 471

Query: 474 VRFPLQLVLGRDLLVTPSAE 493
           V FPL+LVLGR+LLV+P+ E
Sbjct: 472 VTFPLELVLGRELLVSPTTE 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255544103|ref|XP_002513114.1| conserved hypothetical protein [Ricinus communis] gi|223548125|gb|EEF49617.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356542965|ref|XP_003539934.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|356531617|ref|XP_003534373.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Glycine max] Back     alignment and taxonomy information
>gi|357450917|ref|XP_003595735.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355484783|gb|AES65986.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449507688|ref|XP_004163102.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297798878|ref|XP_002867323.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] gi|297313159|gb|EFH43582.1| ubiquitin-specific protease 24 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18417689|ref|NP_567860.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|42573095|ref|NP_974644.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|334187041|ref|NP_001190875.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|75262799|sp|Q9FPS3.1|UBP24_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 24; AltName: Full=Deubiquitinating enzyme 24; Short=AtUBP24; AltName: Full=Ubiquitin thioesterase 24; AltName: Full=Ubiquitin-specific-processing protease 24 gi|11993488|gb|AAG42762.1|AF302672_1 ubiquitin-specific protease 24 [Arabidopsis thaliana] gi|332660424|gb|AEE85824.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660425|gb|AEE85825.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] gi|332660426|gb|AEE85826.1| ubiquitin carboxyl-terminal hydrolase 24 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|222423693|dbj|BAH19813.1| AT4G30890 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449451721|ref|XP_004143610.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 24-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query500
TAIR|locus:2126649551 UBP24 "ubiquitin-specific prot 0.958 0.869 0.544 8.9e-125
DICTYBASE|DDB_G0275021451 ubpB "putative ubiquitin carbo 0.37 0.410 0.424 3.6e-42
ASPGD|ASPL0000031525 840 AN5186 [Emericella nidulans (t 0.56 0.333 0.353 1.6e-40
UNIPROTKB|G4N4M0 1024 MGG_05996 "Ubiquitin C-termina 0.56 0.273 0.351 1.9e-38
UNIPROTKB|Q2NL57791 usp10-a "Ubiquitin carboxyl-te 0.482 0.304 0.350 5.7e-38
UNIPROTKB|Q6DIJ4805 usp10 "Ubiquitin carboxyl-term 0.482 0.299 0.343 7e-38
UNIPROTKB|F1NG89716 USP10 "Ubiquitin carboxyl-term 0.42 0.293 0.385 1.3e-36
RGD|1561965794 Usp10 "ubiquitin specific pept 0.502 0.316 0.35 2.3e-36
UNIPROTKB|Q3KR59794 Usp10 "Ubiquitin carboxyl-term 0.502 0.316 0.35 2.3e-36
UNIPROTKB|Q7ZXR7805 usp10-b "Ubiquitin carboxyl-te 0.482 0.299 0.346 2.4e-36
TAIR|locus:2126649 UBP24 "ubiquitin-specific protease 24" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 278/511 (54%), Positives = 350/511 (68%)

Query:     1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
             MS+ K+FVFGSFTE ETRS+ + + +   K P +S+  +K      +QFGSLN   E+S 
Sbjct:     1 MSEKKVFVFGSFTEHETRSFFEQKPT---KDPQNSK--DKCVGS--IQFGSLNLAAENSS 53

Query:    61 VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
             V T  E   K   DG V    S       +  S   +ND D       ++  P+   +NG
Sbjct:    54 VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112

Query:   113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
              IK  S +  +L+NGV  +K D I   +   +  G ++P   +  SKF  L     D  D
Sbjct:   113 IIKEISESNKSLNNGVA-VKTDPIGLDNLSMS-DGESDPVYKASSSKFQAL-----DNED 165

Query:   169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
              ++ + + SI   K   +K   E V  VKD  PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct:   166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223

Query:   229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
             LLQ+++ +DIPKA  PTL AF  F+S+ D PS  SS + N++V++ GRPF P+MFE VL+
Sbjct:   224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282

Query:   289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
             NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S  +  + ++++S A +D  
Sbjct:   283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342

Query:   347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
             EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct:   343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402

Query:   407 AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG 466
              V  IEDAL LFSA E+LEGYR S TG  GVV+A KS+KIQ LSKI+ILHLMRFSYGSQG
Sbjct:   403 GVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQG 462

Query:   467 STKLHKSVRFPLQLVLGRDLLVTPSAEVLQF 497
             STKL K V+FPL+L L R  LV+ S E L++
Sbjct:   463 STKLRKGVKFPLELNLNRSHLVSLSNESLRY 493
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
DICTYBASE|DDB_G0275021 ubpB "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000031525 AN5186 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4N4M0 MGG_05996 "Ubiquitin C-terminal hydrolase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NL57 usp10-a "Ubiquitin carboxyl-terminal hydrolase 10-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DIJ4 usp10 "Ubiquitin carboxyl-terminal hydrolase 10" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG89 USP10 "Ubiquitin carboxyl-terminal hydrolase 10" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1561965 Usp10 "ubiquitin specific peptidase 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3KR59 Usp10 "Ubiquitin carboxyl-terminal hydrolase 10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZXR7 usp10-b "Ubiquitin carboxyl-terminal hydrolase 10-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS3UBP24_ARATH3, ., 4, ., 1, 9, ., 1, 20.54200.9580.8693yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.921
3rd Layer3.4.19.120.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028642001
RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (498 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query500
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 2e-32
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 3e-32
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 6e-29
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 6e-24
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 5e-22
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 1e-17
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 8e-13
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 2e-12
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 6e-12
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 6e-12
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 7e-12
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 1e-09
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 2e-08
cd02664 327 cd02664, Peptidase_C19H, A subfamily of Peptidase 2e-07
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 7e-07
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 4e-05
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 5e-05
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 3e-04
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 5e-04
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 7e-04
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 0.002
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  125 bits (316), Expect = 2e-32
 Identities = 81/288 (28%), Positives = 107/288 (37%), Gaps = 60/288 (20%)

Query: 201 PRGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTP 259
             GL N GN CFLN+ LQ L    P    LL    ++D    G+  + A    V      
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHV------ 54

Query: 260 SGGSSKKKNISVLDIGRPFSPSM-FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
                       L    P S    F + LK  +           RQEDA EFL +++D M
Sbjct: 55  ---------ERALASSGPGSAPRIFSSNLKQISKHF-----RIGRQEDAHEFLRYLLDAM 100

Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
                               L    +    +              S   + +  IFGG L
Sbjct: 101 Q----------------KACLDRFKKLKAVDPS------------SQETTLVQQIFGGYL 132

Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGN 434
           +S VK       S T  PFL L LDI      ++EDAL  F+ PE L+G   Y+      
Sbjct: 133 RSQVKCLNCKHVSNTYDPFLDLSLDIKG--ADSLEDALEQFTKPEQLDGENKYKCERC-- 188

Query: 435 AGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVL 482
              V A K + I     +L +HL RFS    G  K++K + FP  L L
Sbjct: 189 KKKVKASKQLTIHRAPNVLTIHLKRFSNFRGG--KINKQISFPETLDL 234

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 500
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG0944 763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 99.98
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 99.97
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 99.97
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 99.96
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 99.96
COG5207 749 UBP14 Isopeptidase T [Posttranslational modificati 99.95
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 99.95
KOG1870 842 consensus Ubiquitin C-terminal hydrolase [Posttran 99.94
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 99.94
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 99.94
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.94
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 99.93
KOG1873 877 consensus Ubiquitin-specific protease [Posttransla 99.93
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 99.93
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 99.9
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 99.88
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 99.84
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 99.74
KOG1872 473 consensus Ubiquitin-specific protease [Posttransla 99.64
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.18
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.09
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.02
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 93.88
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 89.06
PF1247833 DUF3697: Ubiquitin-associated protein 2 ; InterPro 83.3
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information 
Probab=100.00  E-value=7.2e-44  Score=364.09  Aligned_cols=233  Identities=24%  Similarity=0.371  Sum_probs=194.4

Q ss_pred             ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCC----------CCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 010812          203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI----------PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL  272 (500)
Q Consensus       203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~----------~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~  272 (500)
                      ||.|+||||||||+||+|+++|+||++++.......          +....+++++|+.||.+||...            
T Consensus         1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~------------   68 (324)
T cd02668           1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN------------   68 (324)
T ss_pred             CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC------------
Confidence            899999999999999999999999999987643221          0123579999999999998643            


Q ss_pred             CCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhC
Q 010812          273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG  352 (500)
Q Consensus       273 ~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  352 (500)
                        ...++|..|..++.     +     ..++|||||||+.+|||.||+++.......                       
T Consensus        69 --~~~i~p~~f~~~l~-----~-----~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~-----------------------  113 (324)
T cd02668          69 --RSVVDPSGFVKALG-----L-----DTGQQQDAQEFSKLFLSLLEAKLSKSKNPD-----------------------  113 (324)
T ss_pred             --CceEChHHHHHHhC-----C-----CCccccCHHHHHHHHHHHHHHHHhhccCCc-----------------------
Confidence              56899999998773     2     568999999999999999999886321100                       


Q ss_pred             CCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeC---Cc
Q 010812          353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YR  428 (500)
Q Consensus       353 ~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g---~~  428 (500)
                                   ..++|.++|.|++...++|. |++.+.+.|+|++|+|+|+  +..+|+++|+.|+.+|.++|   +.
T Consensus       114 -------------~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~--~~~sl~~~L~~~~~~e~l~g~~~~~  178 (324)
T cd02668         114 -------------LKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLK--GHKTLEECIDEFLKEEQLTGDNQYF  178 (324)
T ss_pred             -------------ccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEec--ccCCHHHHHHHhhCceecCCCcccc
Confidence                         02457899999999999996 9999999999999999998  57899999999999999988   45


Q ss_pred             cccCCCCceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812          429 TSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV  500 (500)
Q Consensus       429 c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li  500 (500)
                      |..|++.  +.|.|+..|.++|+||+|||+||.|+.  +...|++++|.||+.|||++|+... ...+..|+|+
T Consensus       179 C~~C~~~--~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-~~~~~~Y~L~  249 (324)
T cd02668         179 CESCNSK--TDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAES-DEGSYVYELS  249 (324)
T ss_pred             CCCCCce--eeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccc-cCCCcEEEEE
Confidence            6666554  489999999999999999999999993  4568999999999999999998543 3456789885

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF12478 DUF3697: Ubiquitin-associated protein 2 ; InterPro: IPR022166 This domain family is found in eukaryotes, and is approximately 30 amino acids in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query500
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 3e-17
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 4e-17
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 5e-17
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 5e-17
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 6e-17
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 8e-17
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 1e-16
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 1e-15
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 2e-15
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 1e-13
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 1e-08
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 5e-08
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 5e-08
2f1z_A 522 Crystal Structure Of Hausp Length = 522 5e-04
1nbf_A 353 Crystal Structure Of A Ubp-Family Deubiquitinating 7e-04
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure 
Iteration: 1

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 122/283 (43%), Gaps = 33/283 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLL-QELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
           GL N GN C++N+ LQ L +         +     DI ++        +G   +     G
Sbjct: 64  GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN------LLGHKGEVAEEFG 117
Query: 262 GSSKKKNISVLDIG--RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 319
              K      L  G  R  SP  F+  +      + +  +G   Q+D+QE L F+MD +H
Sbjct: 118 IIMK-----ALWTGQYRYISPKDFKITIGK----INDQFAGYS-QQDSQELLLFLMDGLH 167
Query: 320 DELLKLQGESTSINGANTALVSL-AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
           ++L K           N  L    A E  W+     N+S +             +F GQ 
Sbjct: 168 EDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVA-----------LFQGQF 216
Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAG 436
           KS V+    +K S T + F+ L L + S +  T++D LRLFS  E L +  R   +    
Sbjct: 217 KSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 276
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
              + K ++I  L  +L++HL RFSY  +   KL  SV FPL+
Sbjct: 277 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLE 319
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query500
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 1e-49
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-44
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 4e-44
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 6e-44
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 3e-41
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 3e-38
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 1e-31
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 1e-29
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-27
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 1e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
 Score =  172 bits (438), Expect = 1e-49
 Identities = 78/292 (26%), Positives = 113/292 (38%), Gaps = 32/292 (10%)

Query: 202 RGLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPT--LTAFVGFVSDFDT 258
            GL N GN CFLNA LQ L S  P     L+    +++P  G       AF   +     
Sbjct: 4   VGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWH 63

Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
           P    +              +P+ F AV + + P           Q+DAQEFL  +M+++
Sbjct: 64  PDSCEA-------------VNPTRFRAVFQKYVPSFSGY-----SQQDAQEFLKLLMERL 105

Query: 319 HDELLKLQ--GESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFL---PSALSDI 373
           H E+ +          NG   +          E     +  A    + +L    S + D+
Sbjct: 106 HLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLEREDSKIVDL 165

Query: 374 FGGQLKSVVK-AQGNKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYR 428
           F GQLKS +K       S T + F  L L I    ++    ++ D   LF+  E LE   
Sbjct: 166 FVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESEN 225

Query: 429 TSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
                       + K + +Q   +IL+LHL RFS       K    V FPLQ
Sbjct: 226 APVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQ 277
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query500
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
1nb8_A 353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
2ayn_A 404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1vjv_A 415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A 374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.86
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.7e-49  Score=408.74  Aligned_cols=270  Identities=26%  Similarity=0.400  Sum_probs=219.8

Q ss_pred             CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC------CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccc
Q 010812          198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR------DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV  271 (500)
Q Consensus       198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~------~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~  271 (500)
                      ..+++||.|+||||||||+||||+++|+||+++......      +......+++.+|+.|+..||...           
T Consensus         5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~-----------   73 (367)
T 2y6e_A            5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR-----------   73 (367)
T ss_dssp             CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS-----------
T ss_pred             CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC-----------
Confidence            346799999999999999999999999999999864321      112234579999999999999643           


Q ss_pred             cCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCc-cCCCcccccchhhhhhHhH
Q 010812          272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTS-INGANTALVSLAEEDEWET  350 (500)
Q Consensus       272 ~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~  350 (500)
                         ...++|..|+.+++...+.|     .+++||||||||++|||.||+++.+....+.. .....+......+.+.|..
T Consensus        74 ---~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~  145 (367)
T 2y6e_A           74 ---DAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWEN  145 (367)
T ss_dssp             ---CSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHH
T ss_pred             ---CCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHH
Confidence               56899999999999988776     89999999999999999999998765443321 1223333444556778987


Q ss_pred             hCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccC-----------------cccCHH
Q 010812          351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE-----------------AVHTIE  412 (500)
Q Consensus       351 ~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~-----------------~~~sL~  412 (500)
                      +..++.           ++|.++|+|++.++++|. |++.+.+.|+|++|+|+||..                 +..+|+
T Consensus       146 ~~~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~  214 (367)
T 2y6e_A          146 HRLRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALR  214 (367)
T ss_dssp             HHHHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHH
T ss_pred             HHHhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHH
Confidence            765554           457899999999999996 999999999999999999853                 246999


Q ss_pred             HHHhhcccceeeeCC---ccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCc-eeeeCCcccc
Q 010812          413 DALRLFSAPENLEGY---RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLV  488 (500)
Q Consensus       413 d~L~~~~~~E~L~g~---~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDL~~y~~~  488 (500)
                      +||+.|+.+|.|++.   .|+.|++  ++.|.|+..|.+||+||+|||+||.|+.....|++++|.||. .|||.+|+..
T Consensus       215 ~~L~~f~~~E~l~~~~~~~C~~C~~--~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~  292 (367)
T 2y6e_A          215 DCIELFTTMETLGEHDPWYCPNCKK--HQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCN  292 (367)
T ss_dssp             HHHHHHTSCEECCC-CCEEETTTTE--EECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSC
T ss_pred             HHHHHhcccccCCCCCCccCCCCCC--CceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccC
Confidence            999999999999974   4555544  458999999999999999999999999777899999999997 6999999864


Q ss_pred             CCCCCCcceeeC
Q 010812          489 TPSAEVLQFLNV  500 (500)
Q Consensus       489 ~~~~~~~~Y~Li  500 (500)
                      . ......|+|+
T Consensus       293 ~-~~~~~~Y~L~  303 (367)
T 2y6e_A          293 L-SARPYVYDLI  303 (367)
T ss_dssp             S-SSCCCEEEEE
T ss_pred             C-CCCCceEEEE
Confidence            3 3456789984
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 500
d2ayna1 383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 2e-22
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 2e-21
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 8e-21
d1vjva_ 397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 4e-16
d1nbfa_ 347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 3e-10
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.4 bits (238), Expect = 2e-22
 Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 40/288 (13%)

Query: 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLL----QELRTRDIPKAGYPTLTAFVGFVSD 255
           LP GL N GN C++NAT+Q + S       L      LR      +      A       
Sbjct: 3   LPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDS 62

Query: 256 FDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPD-VPNSISGRPRQEDAQEFLSFI 314
            D  S                   P +    L    P        G+  Q+DA E    +
Sbjct: 63  MDKTS---------------SSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQM 107

Query: 315 MDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIF 374
           M  +  +L  ++ +S     +++                K KS +              F
Sbjct: 108 MRVLQQKLEAIEDDSVKETDSSS---------ASAATPSKKKSLI-----------DQFF 147

Query: 375 GGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGN 434
           G + ++ +K   ++     +                      L    +     ++ +   
Sbjct: 148 GVEFETTMKCTESEEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEITKQSPTLQR 207

Query: 435 AGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVL 482
             +      +        + +    +      + K+ K V+FPL L +
Sbjct: 208 NALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDM 255
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query500
d1nbfa_ 347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1 383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d1vjva_ 397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 99.97
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=353.00  Aligned_cols=240  Identities=22%  Similarity=0.322  Sum_probs=206.2

Q ss_pred             CCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCC
Q 010812          197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR  276 (500)
Q Consensus       197 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~  276 (500)
                      +.+|.+||.|+||||||||+||+|+++|+||++++...... .....++.++|+.||..|+..               ..
T Consensus         2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~-~~~~~~~~~~l~~lf~~l~~~---------------~~   65 (347)
T d1nbfa_           2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-DDSSKSVPLALQRVFYELQHS---------------DK   65 (347)
T ss_dssp             CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT-CCTTTCHHHHHHHHHHHHHHC---------------SS
T ss_pred             CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC-CcccchHHHHHHHHHHHHhcC---------------CC
Confidence            56788999999999999999999999999999998765433 234567999999999998743               45


Q ss_pred             CcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCC
Q 010812          277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK  356 (500)
Q Consensus       277 ~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~  356 (500)
                      ++.|..+...+..       ..|..+.||||+||+.+||+.|++++.....                             
T Consensus        66 ~~~~~~~~~~~~~-------~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~~-----------------------------  109 (347)
T d1nbfa_          66 PVGTKKLTKSFGW-------ETLDSFMQHDVQELCRVLLDNVENKMKGTCV-----------------------------  109 (347)
T ss_dssp             CBCCHHHHHHTTC-------CGGGGGSCBCHHHHHHHHHHHHHHHHTTSTT-----------------------------
T ss_pred             CcChHHHHHhhch-------hhcchHHHHHHHHHHHHHHHHHHHHHhhccc-----------------------------
Confidence            6788888765532       2347889999999999999999998853211                             


Q ss_pred             cccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCC
Q 010812          357 SAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA  435 (500)
Q Consensus       357 s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~  435 (500)
                                .++|.++|.|++.+.++|. |++.+.+.|+|++|+|+++  ...+++++|..++.+|.|++.++.+|.++
T Consensus       110 ----------~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~--~~~~~~~~l~~~~~~e~l~~~~~~~~~~~  177 (347)
T d1nbfa_         110 ----------EGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK--GKKNIFESFVDYVAVEQLDGDNKYDAGEH  177 (347)
T ss_dssp             ----------TTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECT--TCCBHHHHHHHHTCCEEECGGGCEECSTT
T ss_pred             ----------cccccceeceEEEEeEEeCCccceeeeeccccccccccc--cccchhhhHHhhcchheeccccccccccC
Confidence                      1457899999999999996 9999999999999999998  66899999999999999999888888888


Q ss_pred             ceeeEEEEEEcccCccceEEEecceeeC--CCCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812          436 GVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV  500 (500)
Q Consensus       436 ~~~~a~k~~~i~~lP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li  500 (500)
                      +.+.+.|+..|.++|+||+|||+||.|+  .....|+++.|.||+.|||++|+..........|+|+
T Consensus       178 ~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~  244 (347)
T d1nbfa_         178 GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILH  244 (347)
T ss_dssp             CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEE
T ss_pred             cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccccccCccceeeE
Confidence            8889999999999999999999999998  3456799999999999999999987666677889984
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure