Citrus Sinensis ID: 010813

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
MQAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEEEccccccccccccEEEEEccccccEEEEEEEcccccccHHHHHcccccccccccccccEEcccEEEEEEEEEEccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHcccccHHHHHHHHccccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHcccccEccccccccHHHHHccHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHccccccccccccccHHHHcHHHHHcccccccHHccccccHccccccHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHcHHHcccccEcccccccccHHccccccccccEEEEEcccEcccccccccccccccccEEEEEEEEEEcccccccccccEEEEEEccccccEEEEEEEccccHHHHEEEEEcccHHHHcccccccEccccEEEEEEEEEEEEEcc
MQAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCkhlsgsddldieinepymvfkGLTVKEMEELRDDIKMYLdldratptHVEYWEALMVVCDWELAEARKKDALDRarvrgeqppaellaeerglhSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRleqpsevakfetdldsmpeaeviehddndagnfspepvledTQEAEKEagsfspellhgdddeeaidpdeDRALLERKRIAVLEDQQRRIQEAmaskptpsddnFELKAMKAMGAmeegdavfgsgaevnldsqvywwhdkyrprkpkyfnrvhtgyewnkynqthydhdnpppkivqgykfnifypdlvdktkaptytiekdgsngetciirfhagppyedIAFKIVNKEWeyshkkgfkctfeRGILHVYfnfkryryrr
mqaeiekvkkrreeralekarheeEMALLARERARAEFQDWEkkeeefhfdqskvrseirlregrlkpiDVLCKHlsgsddldieinEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDAldrarvrgeqppaellaeerglhssIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSfspellhgdddeeaidPDEDRALLERKRIAVLEDQQRRIQeamaskptpsddnFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYtiekdgsngeTCIIRFHAGPPYEDIAFKIVNKEWEYSHKkgfkctfergilhvyfnfkryryrr
MQaeiekvkkrreeralekarheeemallareraraeFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSFSPELLHGdddeeaidpdedRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR
**********************************************************IRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEA**************************************L******ELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKH***************************************************************************************************************************AVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRY**
***E*EK*********************************************************RLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEA**********************************VRNLLDGKTHKELEAL****************EYWEAILKRLHIYKAKACLKEIHAK*******************************************************************************************************************************************************PRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR
*********************HEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVL************FSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR
MQAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKD**********************LHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVA******************************************SFSPE*LHG*DDEEAIDPDEDRALLERKRIAVLEDQQ***********T*SDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR
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MQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFSPEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query500 2.2.26 [Sep-21-2011]
F1Q8W0835 Cactin OS=Danio rerio GN= yes no 0.938 0.561 0.404 1e-107
Q8WUQ7758 Cactin OS=Homo sapiens GN yes no 0.938 0.618 0.408 1e-107
Q9CS00772 Cactin OS=Mus musculus GN yes no 0.942 0.610 0.413 1e-105
Q9VR99720 Cactin OS=Drosophila mela yes no 0.954 0.662 0.382 1e-99
B6KG46703 Cactin OS=Toxoplasma gond N/A no 0.978 0.695 0.342 3e-70
G5EG14657 Cactin OS=Caenorhabditis yes no 0.926 0.704 0.329 2e-69
O14342517 Uncharacterized protein C yes no 0.832 0.804 0.275 4e-42
>sp|F1Q8W0|CATIN_DANRE Cactin OS=Danio rerio GN=cactin PE=2 SV=1 Back     alignment and function desciption
 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/561 (40%), Positives = 332/561 (59%), Gaps = 92/561 (16%)

Query: 4   EIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLRE 63
           E++KVK+ R ER  EKA  E+E+ +L RE+    F+ W ++E+ FH  Q+K+RS+IR+R+
Sbjct: 303 ELQKVKQLRLEREREKAMREQELEMLQREKEAEHFKTWAEQEDNFHLHQAKLRSKIRIRD 362

Query: 64  GRLKPIDVLCKHLSG-SDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHV 122
           GR KPID+L K++S   DDL +E++EPY    GLTV +ME+L +DIK+Y++L+     +V
Sbjct: 363 GRAKPIDLLAKYISAEDDDLSVEMHEPYTFLNGLTVTDMEDLLEDIKVYMELE--CGKNV 420

Query: 123 EYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKT 182
           ++W  +  + + E+++ RK +A  +        P +      G+++S+  DV+++  GKT
Sbjct: 421 DFWRDMTTITEDEISKLRKLEASGKG-------PGD---RREGINTSVSTDVQSVFKGKT 470

Query: 183 HKELEALQTKIELQMRAGTAKV-VEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRL-- 239
           + +L+AL   IE +++AG + + + YWE++L+++ +Y A+A L+E H  +LR+ L +L  
Sbjct: 471 YSQLQALYMNIESKIQAGGSNLDIGYWESLLQQVRVYMARARLRERHQDVLRQKLYKLKQ 530

Query: 240 -------------------EQP---------------SEVAKFETDLD------------ 253
                              EQP               S+ A  E D D            
Sbjct: 531 EQGVESEPLFPIIKEEPEKEQPISREAGSGEEEAGSSSQQADREEDEDRRSRRTGGEEAE 590

Query: 254 ----SMPEAEVIEHDDNDAGNFSPEPVLED-----TQEAEKEAGSFSPELLHGDD---DE 301
               S PE E    ++    + +PE VL +       +AE ++G +SP LL   +   D 
Sbjct: 591 RSGRSSPEEEKKGEEEEGEKDEAPEAVLTEEDLIQQSQAEYDSGRYSPTLLQNSELPLDT 650

Query: 302 EAIDPDED--RALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDA 359
             I  +ED  R LL R+++ V  D         AS+   ++D F  +A + MG  E   +
Sbjct: 651 HIIAEEEDLQRLLLARRQMQVTGD---------ASES--AEDLFVRRAKEGMGGDEAQFS 699

Query: 360 VFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYK 419
           V     E+ L  ++Y W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQGYK
Sbjct: 700 V-----EMPLTGKMYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYK 754

Query: 420 FNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFK 479
           FNIFYPDL+DK   P Y +E    N +  I+RFHAGPPYEDIAFKIVN+EWEYSH+ GF+
Sbjct: 755 FNIFYPDLIDKRSTPQYFLEPCPDNKDFGILRFHAGPPYEDIAFKIVNREWEYSHRHGFR 814

Query: 480 CTFERGILHVYFNFKRYRYRR 500
           C F  GI  ++F+FKRYRYRR
Sbjct: 815 CQFANGIFQLWFHFKRYRYRR 835
May be involved in the regulation of innate immune response (By similarity). Plays a role during early embryonic development. Involved in the formation of the anteroposterior axis with important roles also in neural development.
Danio rerio (taxid: 7955)
>sp|Q8WUQ7|CATIN_HUMAN Cactin OS=Homo sapiens GN=CACTIN PE=1 SV=3 Back     alignment and function description
>sp|Q9CS00|CATIN_MOUSE Cactin OS=Mus musculus GN=Cactin PE=1 SV=2 Back     alignment and function description
>sp|Q9VR99|CATIN_DROME Cactin OS=Drosophila melanogaster GN=cactin PE=1 SV=3 Back     alignment and function description
>sp|B6KG46|CATIN_TOXGO Cactin OS=Toxoplasma gondii GN=CACTIN PE=1 SV=1 Back     alignment and function description
>sp|G5EG14|CATIN_CAEEL Cactin OS=Caenorhabditis elegans GN=cacn-1 PE=1 SV=1 Back     alignment and function description
>sp|O14342|YB3C_SCHPO Uncharacterized protein C2F12.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2F12.12c PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query500
357510885 648 Cactin (ISS) [Medicago truncatula] gi|35 0.994 0.766 0.852 0.0
356572506 673 PREDICTED: uncharacterized protein C19or 0.994 0.738 0.848 0.0
225441082 654 PREDICTED: uncharacterized protein C19or 0.996 0.761 0.846 0.0
147838150 682 hypothetical protein VITISV_008915 [Viti 0.996 0.730 0.846 0.0
356505297 670 PREDICTED: uncharacterized protein C19or 0.994 0.741 0.844 0.0
449440173 681 PREDICTED: cactin-like [Cucumis sativus] 0.99 0.726 0.828 0.0
224068911504 predicted protein [Populus trichocarpa] 0.996 0.988 0.846 0.0
449501007 686 PREDICTED: cactin-like [Cucumis sativus] 0.99 0.721 0.821 0.0
255556764 632 conserved hypothetical protein [Ricinus 0.994 0.786 0.815 0.0
357440277 658 Cactin (ISS) [Medicago truncatula] gi|35 0.984 0.747 0.809 0.0
>gi|357510885|ref|XP_003625731.1| Cactin (ISS) [Medicago truncatula] gi|355500746|gb|AES81949.1| Cactin (ISS) [Medicago truncatula] Back     alignment and taxonomy information
 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/507 (85%), Positives = 463/507 (91%), Gaps = 10/507 (1%)

Query: 3   AEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLR 62
           AEIEKVKKRREERALEKA+HEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLR
Sbjct: 143 AEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLR 202

Query: 63  EGRLKPIDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHV 122
           EGR +PIDVL KHL+GSDDLDIEINEPYMVFKGLTVKEM ELRDDIKM+LDLDRATPTHV
Sbjct: 203 EGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVKEMSELRDDIKMHLDLDRATPTHV 262

Query: 123 EYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKT 182
           EYWEAL+VVCDWELAE+RKKDA+DRARVRGE+PPAELLAE+RGLHSS+E DV++LL GKT
Sbjct: 263 EYWEALLVVCDWELAESRKKDAIDRARVRGEEPPAELLAEQRGLHSSVEPDVKDLLHGKT 322

Query: 183 HKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLEQP 242
             ELEALQ  IE +MR GTAKVVEYWEAILK LHIYKAKACLKEIHAKMLRKHLQRLEQP
Sbjct: 323 RTELEALQAHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKMLRKHLQRLEQP 382

Query: 243 SEVA-KFETDLDSMPEAEVIE-HDDNDAG-------NFSPEPVLEDTQEAEKEAGSFSPE 293
            E   K E  LD +PE    E  +D DA        +FSPEPV E+ QEAE EAGSFSP+
Sbjct: 383 LEDEDKPERALDMIPEEAYTEDEEDEDAKVVRSADESFSPEPVREN-QEAEDEAGSFSPQ 441

Query: 294 LLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGA 353
           LLH D++EEAIDP+ED+A+LERKR+AV+E+QQRRIQEAMASKP PS+DN ELKA KAMGA
Sbjct: 442 LLHDDENEEAIDPEEDKAILERKRMAVMEEQQRRIQEAMASKPAPSEDNLELKAFKAMGA 501

Query: 354 MEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPK 413
           ME+GDAVFGSGAEV+LDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPK
Sbjct: 502 MEDGDAVFGSGAEVSLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPK 561

Query: 414 IVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYS 473
           IVQGYKFNIFYPDLVDK KAP YTIEKDGSNGETCIIRFHAGPPYEDIAF+IVNKEWEYS
Sbjct: 562 IVQGYKFNIFYPDLVDKIKAPNYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYS 621

Query: 474 HKKGFKCTFERGILHVYFNFKRYRYRR 500
           HKKGFKCTFERGILHVYFNFKR+RYRR
Sbjct: 622 HKKGFKCTFERGILHVYFNFKRHRYRR 648

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356572506|ref|XP_003554409.1| PREDICTED: uncharacterized protein C19orf29 homolog [Glycine max] Back     alignment and taxonomy information
>gi|225441082|ref|XP_002264567.1| PREDICTED: uncharacterized protein C19orf29 homolog [Vitis vinifera] gi|297740019|emb|CBI30201.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147838150|emb|CAN74141.1| hypothetical protein VITISV_008915 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356505297|ref|XP_003521428.1| PREDICTED: uncharacterized protein C19orf29-like [Glycine max] Back     alignment and taxonomy information
>gi|449440173|ref|XP_004137859.1| PREDICTED: cactin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224068911|ref|XP_002326229.1| predicted protein [Populus trichocarpa] gi|222833422|gb|EEE71899.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449501007|ref|XP_004161252.1| PREDICTED: cactin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255556764|ref|XP_002519415.1| conserved hypothetical protein [Ricinus communis] gi|223541278|gb|EEF42829.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357440277|ref|XP_003590416.1| Cactin (ISS) [Medicago truncatula] gi|355479464|gb|AES60667.1| Cactin (ISS) [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query500
ZFIN|ZDB-GENE-060503-322530 cactin "cactin" [Danio rerio ( 0.472 0.445 0.496 5.3e-100
FB|FBgn0031114720 cactin "cactin" [Drosophila me 0.896 0.622 0.380 1.1e-87
DICTYBASE|DDB_G0279317727 DDB_G0279317 "unknown" [Dictyo 0.27 0.185 0.698 2.8e-84
UNIPROTKB|F1MB35763 C7H19orf29 "Uncharacterized pr 0.888 0.581 0.390 1.8e-80
UNIPROTKB|F1PZX0752 CACTIN "Uncharacterized protei 0.89 0.591 0.394 4.7e-80
MGI|MGI:1917562772 Cactin "cactin, spliceosome C 0.894 0.579 0.383 6e-80
RGD|1563634764 Cactin "cactin, spliceosome C 0.888 0.581 0.385 3.3e-79
WB|WBGene00012230657 cacn-1 [Caenorhabditis elegans 0.514 0.391 0.413 1.4e-70
UNIPROTKB|G5EG14657 cacn-1 "Cactin" [Caenorhabditi 0.514 0.391 0.413 1.4e-70
UNIPROTKB|G4MWA5502 MGG_01852 "Uncharacterized pro 0.25 0.249 0.637 3.7e-70
ZFIN|ZDB-GENE-060503-322 cactin "cactin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 612 (220.5 bits), Expect = 5.3e-100, Sum P(2) = 5.3e-100
 Identities = 125/252 (49%), Positives = 156/252 (61%)

Query:   254 SMPEAEVIEHDDNDAGNFSPEPVL--EDT---QEAEKEAGSFSPELLHGXXXXXXXXXXX 308
             S PE E    ++    + +PE VL  ED     +AE ++G +SP LL             
Sbjct:   290 SSPEEEKKGEEEEGEKDEAPEAVLTEEDLIQQSQAEYDSGRYSPTLLQNSELPLDTHIIA 349

Query:   309 XRALLERKRIAVLEDQQRRIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVN 368
                 L+R  +A      RR  +        ++D F  +A + MG  E   A F    E+ 
Sbjct:   350 EEEDLQRLLLA------RRQMQVTGDASESAEDLFVRRAKEGMGGDE---AQFS--VEMP 398

Query:   369 LDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLV 428
             L  ++Y W DKYRPRKP++FNRVHTG+EWNKYNQTHYD DNPPPKIVQGYKFNIFYPDL+
Sbjct:   399 LTGKMYLWADKYRPRKPRFFNRVHTGFEWNKYNQTHYDFDNPPPKIVQGYKFNIFYPDLI 458

Query:   429 DKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILH 488
             DK   P Y +E    N +  I+RFHAGPPYEDIAFKIVN+EWEYSH+ GF+C F  GI  
Sbjct:   459 DKRSTPQYFLEPCPDNKDFGILRFHAGPPYEDIAFKIVNREWEYSHRHGFRCQFANGIFQ 518

Query:   489 VYFNFKRYRYRR 500
             ++F+FKRYRYRR
Sbjct:   519 LWFHFKRYRYRR 530
GO:0003407 "neural retina development" evidence=IMP
FB|FBgn0031114 cactin "cactin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0279317 DDB_G0279317 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MB35 C7H19orf29 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZX0 CACTIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1917562 Cactin "cactin, spliceosome C complex subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1563634 Cactin "cactin, spliceosome C complex subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00012230 cacn-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G5EG14 cacn-1 "Cactin" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4MWA5 MGG_01852 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000554001
SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (564 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query500
pfam09732125 pfam09732, CactinC_cactus, Cactus-binding C-termin 4e-91
smart01050129 smart01050, CactinC_cactus, Cactus-binding C-termi 4e-76
pfam10312190 pfam10312, Cactin_mid, Conserved mid region of cac 1e-66
>gnl|CDD|192352 pfam09732, CactinC_cactus, Cactus-binding C-terminus of cactin protein Back     alignment and domain information 
 Score =  272 bits (699), Expect = 4e-91
 Identities = 91/125 (72%), Positives = 107/125 (85%)

Query: 376 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPT 435
           W DKYRPRKP+YFNRV TG++WNKYNQTHYD DNPPPK VQGYKFNIFYPDL+DK KAP 
Sbjct: 1   WSDKYRPRKPRYFNRVKTGFDWNKYNQTHYDSDNPPPKTVQGYKFNIFYPDLIDKGKAPR 60

Query: 436 YTIEKDGSNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKR 495
           Y IE      +TC++RFHAGPPYEDIAF+IVNKEW+YS K+GF+ +F+ G+L +YFNFK+
Sbjct: 61  YRIEPCEDPDDTCLLRFHAGPPYEDIAFRIVNKEWDYSRKRGFRSSFDNGVLQLYFNFKK 120

Query: 496 YRYRR 500
            RYRR
Sbjct: 121 LRYRR 125

CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain pfam10312 further upstream. Length = 125
>gnl|CDD|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin protein Back     alignment and domain information
>gnl|CDD|220686 pfam10312, Cactin_mid, Conserved mid region of cactin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 500
KOG2370623 consensus Cactin [Signal transduction mechanisms] 100.0
PF09732125 CactinC_cactus: Cactus-binding C-terminus of cacti 100.0
PF10312191 Cactin_mid: Conserved mid region of cactin; InterP 100.0
KOG0227222 consensus Splicing factor 3a, subunit 2 [RNA proce 99.73
COG5246222 PRP11 Splicing factor 3a, subunit 2 [RNA processin 99.37
KOG2370623 consensus Cactin [Signal transduction mechanisms] 93.3
PF10312191 Cactin_mid: Conserved mid region of cactin; InterP 85.02
>KOG2370 consensus Cactin [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=9.2e-145  Score=1117.81  Aligned_cols=475  Identities=50%  Similarity=0.888  Sum_probs=402.1

Q ss_pred             hHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH-HHHHhhhHHHhhhhhhhhhhhhhhhhhhhcCCCchhhHHhhhccCCC
Q 010813            2 QAEIEKVKKRREERALEKARHEEEMALLARER-ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSD   80 (500)
Q Consensus         2 ~~EiEkvkkrR~eRE~E~~~~Eee~~~l~R~r-e~~~~~ew~~kEd~F~L~Qak~Rs~IRi~egRaKPID~La~~l~~~~   80 (500)
                      +.|+++||+||++|+.|++++|+++.++||.+ ++.||.+|..||  ||+.|+|+||.|||++|||||||+|++++.+.+
T Consensus       129 l~evekvkk~reer~~eka~~Ede~mmlqrar~aa~qf~d~~~ke--Fh~dq~KlrseIrl~~Grak~idll~~~~dfgd  206 (623)
T KOG2370|consen  129 LPEVEKVKKRREERREEKAMQEDEFMMLQRARRAAIQFKDWRSKE--FHFDQDKLRSEIRLRPGRAKPIDLLKNYIDFGD  206 (623)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccc--chhhhHhhhheeeecCCccchhhHHHhhhcccc
Confidence            56999999999999999999999999999999 999999999999  999999999999999999999999999999999


Q ss_pred             CCcccccchhhhhcCCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCchhhh
Q 010813           81 DLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELL  160 (500)
Q Consensus        81 ~~dv~l~eP~~i~~gL~~~dleeL~~DIk~y~~Le~~~~~n~~fW~~m~vic~deL~k~rk~e~~~~~~~~G~~~~~~~~  160 (500)
                      ++|++|++||.||.||+++|||+|..||++|.+||+ ++++..||++|.+||+++|+..+  .+.+              
T Consensus       207 eldmel~eP~~vlkg~~vedlEel~~dIk~y~ele~-~~kr~tyW~~v~~iv~delq~~~--~aqn--------------  269 (623)
T KOG2370|consen  207 ELDMELSEPYSVLKGLKVEDLEELSRDIKDYQELET-NQKRLTYWKDVIMIVNDELQHNK--VAQN--------------  269 (623)
T ss_pred             hhhhhccChHHHHccCCHhHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--hhhh--------------
Confidence            999999999999999999999999999999999998 68999999999999999998763  2211              


Q ss_pred             hhhhccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010813          161 AEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLE  240 (500)
Q Consensus       161 ~~~~gIh~sV~~DI~~il~gKS~~eL~~Le~qI~~KL~sg~~~Dv~YWE~lLk~L~v~kAka~Lr~~h~~~l~~~l~~l~  240 (500)
                      .++.+||++|..||..||.|||++||++|+.||.+||+||.++|++||+.||++|++|||+|+|+++|+.+|+.+|..|+
T Consensus       270 sRgd~~haave~dv~~il~~Ks~~qL~eLe~qieaklrsns~~d~~YWedll~qLk~ykAra~Lke~h~e~Lr~~l~~Lk  349 (623)
T KOG2370|consen  270 SRGDKLHAAVEVDVRKILAGKSFEQLEELEAQIEAKLRSNSPLDTDYWEDLLNQLKSYKARARLKETHNEELRIRLNKLK  349 (623)
T ss_pred             ccccceehhhhhhHHHHhCCcCHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            13356999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhcccCCCCCcc-cccccC----------CCCCCCCCCCCCcccc--h-HHhhhcCCC--CCCCCCCCCCCcCC
Q 010813          241 QPSEVAKFETDLDSMPEA-EVIEHD----------DNDAGNFSPEPVLEDT--Q-EAEKEAGSF--SPELLHGDDDEEAI  304 (500)
Q Consensus       241 ~~q~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~--~-~~~~~~~~~--sp~~~~~~~~~~~i  304 (500)
                      +.+..++.+..+..+... ++.++.          +.......+.++..+.  + .+.+.+|+|  ||.+|+.++.+...
T Consensus       350 ~e~~~e~~qevapqlkeemed~eee~~~~~~Dpel~e~e~a~~~r~l~~e~~d~~rel~~~gny~~S~~yi~~~~ptqa~  429 (623)
T KOG2370|consen  350 NEEWDEAFQEVAPQLKEEMEDREEELYIVPIDPELIEREQAIPRRPLPEELADYERELYDAGNYVKSPTYIPESDPTQAQ  429 (623)
T ss_pred             hhhhhhhhhhhChhhhhhhhcchhhcccCCCCCCccccccccCCCCCchHHHHHHHHHHHccccccCcccccCCCccccc
Confidence            988777655433333211 111111          1111222333333221  2 236889999  99999987655555


Q ss_pred             Ch-hHHHH-HHHHHHHHHHHHHHH-HHHHhhhCCCCCCChHHHHHHHHHccccccCcccccCCcccccCCccccccccCC
Q 010813          305 DP-DEDRA-LLERKRIAVLEDQQR-RIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYR  381 (500)
Q Consensus       305 ~~-~~~~~-~l~~~r~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~E~~f~~~~ev~l~~~~y~W~dKYR  381 (500)
                      || ..+.. +|...+..+..++.. ++.-.+.+.+++.  .+++.+ .+..||+.++++|++  |++|++++|+|+||||
T Consensus       430 dp~~p~~e~Ll~e~e~~~~~tqr~~R~~~~~ds~~aPq--e~em~a-~a~eGMq~~eaifga--E~~Lda~~~lw~Dkyr  504 (623)
T KOG2370|consen  430 DPTEPKNENLLNEDEDSIANTQRLERLYLQSDSAEAPQ--ELEMLA-DAVEGMQTDEAIFGA--EVNLDAEVYLWHDKYR  504 (623)
T ss_pred             CCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCcCCcH--HHHHHH-HHHhcccccchhccc--hhcccchhhhhccCcC
Confidence            55 22333 344434444332222 2222223333444  344444 346679999999985  8999999999999999


Q ss_pred             CCCCcccccccccccccccccccCCCCCCCcccceeEEEEEecCCCCCCCCCCcEEEeecCCCCCeEEEEEecCCCCcce
Q 010813          382 PRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDI  461 (500)
Q Consensus       382 PRKPrYFNRV~TGyEWNKYNQTHYD~DNPPPKvvqGy~FnifYP~l~D~~~~P~~~i~~~~~~~~~~~l~f~ag~PYedi  461 (500)
                      ||||+||||||||||||||||||||+|||||||||||+||||||||+|++.+|+|+|++|..+++||+|+||||||||||
T Consensus       505 prKP~YfNRVhtGfeWNkYNQtHyd~dnPPPKiVQGYkFNIFYPDLidk~~aP~y~ie~~~d~~d~ciIRF~aGpPYeDI  584 (623)
T KOG2370|consen  505 PRKPHYFNRVHTGFEWNKYNQTHYDEDNPPPKIVQGYKFNIFYPDLIDKGRAPTYRIERCRDKNDFCIIRFHAGPPYEDI  584 (623)
T ss_pred             cCCcchhhhhccccccccccccccccCCCCchhhcceeecccchhhhccccCCeeeeeecCCCCceEEEEeccCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999998889999999999999999


Q ss_pred             eeeeeccccccccCCccceeeccceEEEEEEeecccccC
Q 010813          462 AFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR  500 (500)
Q Consensus       462 aFkI~n~ew~~~~~~gf~~~fd~~~~~l~f~Fkr~rYRR  500 (500)
                      ||+|||+||+|||++||+|+|++|||||||+||||||||
T Consensus       585 AFkIVnkeWeyshKrGfKcqF~ngvlqL~F~FKk~ryRR  623 (623)
T KOG2370|consen  585 AFKIVNKEWEYSHKRGFKCQFDNGVLQLWFRFKKYRYRR  623 (623)
T ss_pred             hhhhhcchhhhhhhcCccceeeCCeeeeeehhhhhhccC
Confidence            999999999999999999999999999999999999998

>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex Back     alignment and domain information
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins Back     alignment and domain information
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification] Back     alignment and domain information
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification] Back     alignment and domain information
>KOG2370 consensus Cactin [Signal transduction mechanisms] Back     alignment and domain information
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query500
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-07
4dgw_C231 PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 72/539 (13%), Positives = 145/539 (26%), Gaps = 187/539 (34%)

Query: 5   IEKVKKRREERALEKARHEEEMAL----------LARERARAEFQDWEKKEEEFHF---- 50
           ++   K R+  AL + R  + + +          +A +   +      K + +  F    
Sbjct: 134 LQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-----KVQCKMDFKIFW 186

Query: 51  -DQSKVRSEIRLREGRLKPIDVLCKHL--SGSDDLDIEINEPYMVFKGLTVKEMEELRDD 107
            +     S     E  L+ +  L   +  + +   D   N             +  ++ +
Sbjct: 187 LNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKL---------RIHSIQAE 233

Query: 108 IKMYLDLDRATPTHVEYWEALMV---VCDWELAEARKKDALD-RARV----RGEQPPAEL 159
           ++  L           Y   L+V   V + +       +A +   ++    R +Q   + 
Sbjct: 234 LRRLL-------KSKPYENCLLVLLNVQNAKAW-----NAFNLSCKILLTTRFKQV-TDF 280

Query: 160 LAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYK 219
           L+     H S++    +     T  E+++L  K  L  R             L R     
Sbjct: 281 LSAATTTHISLD----HHSMTLTPDEVKSLLLKY-LDCRPQD----------LPR----- 320

Query: 220 AKACLKEIH-------AKMLRKHLQRLEQPSEVAKFETDLDSMPEAEVIEHDDNDAGNFS 272
            +      +       A+ +R  L   +                     +H + D     
Sbjct: 321 -EVL--TTNPRRLSIIAESIRDGLATWDN-------------------WKHVNCDK---- 354

Query: 273 PEPVLEDTQEAEKEAGSFSPELLHGDDDEEAIDPDEDRALLERKRIAVLEDQQRRIQEAM 332
               L    E+     S              ++P E R + +R  ++V            
Sbjct: 355 ----LTTIIES-----SL-----------NVLEPAEYRKMFDR--LSVF----------- 381

Query: 333 ASKPTPSDDNFELKAMKAM-GAMEEGDA-------VFGSGAEVNLDSQVYWWHDKYRPRK 384
                P   +     +  +   + + D           S  E             Y   K
Sbjct: 382 -----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436

Query: 385 PKYFNR--VHTGYEWNKYNQT-HYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKD 441
            K  N   +H     + YN    +D D+  P  +  Y    FY  +        + ++  
Sbjct: 437 VKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQY----FYSHIG-------HHLKNI 484

Query: 442 GSNGETCIIRFHAGPPYEDIAF---KIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYR 497
                  + R      + D  F   KI +                  IL+     K Y+
Sbjct: 485 EHPERMTLFR----MVFLDFRFLEQKIRH--------DSTAWNASGSILNTLQQLKFYK 531
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query500
4dgw_C231 PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A 99.75
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.75  E-value=9.2e-19  Score=165.62  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=67.0

Q ss_pred             ccceeEEEEEecCC-C----C----CCCCCCcEEEeecC-----CCCCeEEEEEecCCCCcceeeeeeccccccccC---
Q 010813          413 KIVQGYKFNIFYPD-L----V----DKTKAPTYTIEKDG-----SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHK---  475 (500)
Q Consensus       413 KvvqGy~FnifYP~-l----~----D~~~~P~~~i~~~~-----~~~~~~~l~f~ag~PYediaFkI~n~ew~~~~~---  475 (500)
                      .-++|+.|+|.||+ +    +    +.+..|+|||||++     +.+++|||+| |++|||+|||+|||+|++.+.+   
T Consensus       113 TgQ~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~PKd~QYLVI-AAEPYETIAFKIPNrEIDk~e~~~~  191 (231)
T 4dgw_C          113 XGSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVI-AYEPFENIAIELPPNEILFSENNDM  191 (231)
T ss_dssp             CCBCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCCCCCEEEEE-ECSSSCCBCCEECSSCSSCCSCCSC
T ss_pred             CCCeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCCCCCEEEEE-EeCCCCCceeEcCChhhcccccccc
Confidence            34899999999999 4    1    35678999999996     3478999999 9999999999999999999872   


Q ss_pred             ----------Cccceeec--cceEEEEEEeec
Q 010813          476 ----------KGFKCTFE--RGILHVYFNFKR  495 (500)
Q Consensus       476 ----------~gf~~~fd--~~~~~l~f~Fkr  495 (500)
                                ..||++||  +|.|.|||+||+
T Consensus       192 ~~~~~svDElgKfwTyWD~DsK~FyLQffFK~  223 (231)
T 4dgw_C          192 DNNNDGVDELNKKCTFWDAISKLYYVQFFFKQ  223 (231)
T ss_dssp             CCCCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred             ccccccccccCCEEEEecCCCCEEEEEEEEee
Confidence                      22899999  899999999995

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00